Query 040319
Match_columns 812
No_of_seqs 790 out of 4813
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 07:17:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-152 2E-157 1348.9 85.1 768 2-810 90-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1E-129 3E-134 1124.8 67.8 614 163-812 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3.5E-82 7.6E-87 748.0 67.6 686 60-809 47-748 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.1E-68 2.5E-73 617.9 53.2 474 61-575 84-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.2E-68 4.8E-73 615.8 52.7 531 29-610 366-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.8E-64 4E-69 583.3 58.8 504 131-678 367-915 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-34 1.3E-38 345.3 65.5 649 6-674 167-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.3E-34 1.6E-38 344.5 65.8 583 69-670 300-898 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 2.9E-38 6.3E-43 266.8 8.2 106 679-802 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 3E-23 6.5E-28 251.9 58.6 626 9-670 39-738 (1157)
11 PRK11447 cellulose synthase su 99.9 2.5E-22 5.3E-27 244.0 54.1 602 38-673 33-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 3.3E-20 7.2E-25 214.7 54.3 592 45-671 56-739 (987)
13 PRK09782 bacteriophage N4 rece 99.9 4.8E-19 1E-23 205.2 58.8 576 66-672 44-706 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 4.5E-19 9.7E-24 181.3 33.5 452 169-669 51-516 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 4.9E-18 1.1E-22 173.8 28.1 416 241-671 52-484 (966)
16 KOG2002 TPR-containing nuclear 99.8 2.5E-15 5.5E-20 162.6 44.7 577 49-675 146-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.8 3.4E-16 7.4E-21 178.8 37.6 413 244-671 134-570 (615)
18 PRK11788 tetratricopeptide rep 99.8 1.4E-17 3E-22 180.7 24.7 292 378-679 44-354 (389)
19 PRK11788 tetratricopeptide rep 99.8 2.3E-17 5E-22 178.9 26.1 298 173-540 42-354 (389)
20 PRK15174 Vi polysaccharide exp 99.8 1.5E-15 3.3E-20 172.7 34.6 328 304-643 47-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 7.9E-16 1.7E-20 178.9 32.2 185 484-672 248-456 (765)
22 KOG2002 TPR-containing nuclear 99.7 1.5E-13 3.2E-18 149.2 45.5 479 182-674 146-677 (1018)
23 TIGR00990 3a0801s09 mitochondr 99.7 1.8E-14 3.9E-19 164.7 39.6 444 168-670 129-595 (615)
24 KOG4422 Uncharacterized conser 99.7 2E-13 4.4E-18 134.6 38.2 444 65-603 117-587 (625)
25 PRK15174 Vi polysaccharide exp 99.7 4.5E-15 9.8E-20 168.9 31.2 326 335-673 43-382 (656)
26 PRK14574 hmsH outer membrane p 99.7 1.4E-13 3.1E-18 156.7 39.6 427 175-669 43-510 (822)
27 PRK10049 pgaA outer membrane p 99.7 1.2E-12 2.6E-17 152.5 43.0 408 102-569 18-455 (765)
28 KOG4422 Uncharacterized conser 99.6 3.2E-12 6.8E-17 126.3 34.6 307 8-369 125-468 (625)
29 PRK14574 hmsH outer membrane p 99.6 2.2E-12 4.8E-17 147.1 38.0 453 142-646 42-521 (822)
30 KOG4318 Bicoid mRNA stability 99.6 1.3E-11 2.7E-16 132.7 39.3 633 18-675 10-811 (1088)
31 KOG2076 RNA polymerase III tra 99.6 1.9E-10 4.2E-15 124.7 48.8 633 11-668 152-891 (895)
32 KOG2076 RNA polymerase III tra 99.6 2.8E-11 6.2E-16 131.0 38.5 516 144-669 150-766 (895)
33 KOG0495 HAT repeat protein [RN 99.6 3.3E-09 7.2E-14 110.8 49.8 459 176-686 416-892 (913)
34 KOG4318 Bicoid mRNA stability 99.5 2.3E-11 4.9E-16 130.8 34.0 538 85-683 11-604 (1088)
35 PF13429 TPR_15: Tetratricopep 99.5 1.2E-13 2.5E-18 141.7 10.1 213 450-669 56-274 (280)
36 KOG0495 HAT repeat protein [RN 99.4 4.4E-08 9.6E-13 102.6 47.7 578 11-650 264-892 (913)
37 KOG2003 TPR repeat-containing 99.4 6.6E-11 1.4E-15 117.6 24.6 457 36-551 204-706 (840)
38 KOG1126 DNA-binding cell divis 99.4 1.7E-11 3.6E-16 128.8 19.6 161 502-671 419-585 (638)
39 KOG0547 Translocase of outer m 99.4 5.3E-10 1.1E-14 112.9 28.8 211 451-669 339-563 (606)
40 KOG1915 Cell cycle control pro 99.4 1.8E-08 3.8E-13 101.6 37.4 479 150-671 88-624 (677)
41 KOG1126 DNA-binding cell divis 99.4 3E-11 6.6E-16 126.9 18.8 277 384-672 334-620 (638)
42 KOG1155 Anaphase-promoting com 99.3 1.5E-09 3.2E-14 109.1 26.3 354 267-669 163-533 (559)
43 KOG1155 Anaphase-promoting com 99.3 1.2E-08 2.6E-13 102.8 31.8 373 234-671 161-552 (559)
44 KOG2003 TPR repeat-containing 99.3 1.1E-08 2.3E-13 102.2 31.3 271 378-658 428-709 (840)
45 PRK10747 putative protoheme IX 99.3 7E-10 1.5E-14 119.2 24.9 227 376-639 160-391 (398)
46 PRK10747 putative protoheme IX 99.3 8.7E-10 1.9E-14 118.4 24.4 275 382-669 97-387 (398)
47 PF13429 TPR_15: Tetratricopep 99.3 1.9E-11 4E-16 125.4 11.0 254 307-567 16-274 (280)
48 PF13041 PPR_2: PPR repeat fam 99.3 1.9E-11 4E-16 87.5 6.9 50 502-551 1-50 (50)
49 KOG1915 Cell cycle control pro 99.2 2.9E-08 6.4E-13 100.0 31.4 415 283-711 88-535 (677)
50 TIGR02521 type_IV_pilW type IV 99.2 5.3E-10 1.2E-14 111.5 19.6 197 471-671 29-231 (234)
51 KOG2047 mRNA splicing factor [ 99.2 2E-06 4.3E-11 90.4 45.5 128 440-569 479-614 (835)
52 TIGR00540 hemY_coli hemY prote 99.2 6.2E-09 1.3E-13 112.6 28.4 294 310-636 95-397 (409)
53 TIGR00540 hemY_coli hemY prote 99.2 2E-09 4.4E-14 116.3 23.9 291 273-602 87-395 (409)
54 PF13041 PPR_2: PPR repeat fam 99.2 4E-11 8.7E-16 85.8 6.2 50 62-111 1-50 (50)
55 KOG1173 Anaphase-promoting com 99.2 2.9E-08 6.2E-13 102.7 29.1 194 469-669 308-515 (611)
56 KOG3616 Selective LIM binding 99.2 1.1E-06 2.4E-11 93.1 41.1 529 45-669 456-1021(1636)
57 KOG0985 Vesicle coat protein c 99.2 1.4E-05 3E-10 88.2 49.7 158 487-669 1089-1246(1666)
58 KOG1174 Anaphase-promoting com 99.1 1.9E-07 4.1E-12 92.8 31.1 307 330-645 190-507 (564)
59 KOG2376 Signal recognition par 99.1 4.5E-07 9.7E-12 94.5 33.2 434 213-668 23-516 (652)
60 KOG1173 Anaphase-promoting com 99.1 2.1E-07 4.5E-12 96.5 28.6 278 236-549 243-532 (611)
61 KOG1840 Kinesin light chain [C 99.1 2.6E-08 5.7E-13 106.4 22.8 230 439-670 200-477 (508)
62 KOG3785 Uncharacterized conser 99.1 1E-06 2.2E-11 85.8 31.3 215 408-670 291-512 (557)
63 KOG0985 Vesicle coat protein c 99.0 6.1E-05 1.3E-09 83.3 47.2 605 39-673 366-1163(1666)
64 COG3071 HemY Uncharacterized e 99.0 3.6E-07 7.8E-12 91.1 28.1 296 179-538 97-395 (400)
65 PRK12370 invasion protein regu 99.0 2E-08 4.2E-13 113.0 22.1 243 417-672 276-535 (553)
66 PRK11189 lipoprotein NlpI; Pro 99.0 1.7E-08 3.7E-13 103.7 18.8 210 453-673 41-266 (296)
67 KOG2047 mRNA splicing factor [ 99.0 2.2E-05 4.9E-10 82.8 41.1 525 33-592 102-709 (835)
68 COG3071 HemY Uncharacterized e 99.0 2.6E-07 5.7E-12 92.0 25.6 286 312-635 97-387 (400)
69 COG3063 PilF Tfp pilus assembl 99.0 2.3E-08 5E-13 92.0 16.3 162 506-674 37-204 (250)
70 KOG4162 Predicted calmodulin-b 99.0 2.8E-06 6E-11 91.6 33.6 499 76-672 239-783 (799)
71 COG2956 Predicted N-acetylgluc 99.0 2.8E-07 6.1E-12 88.9 23.4 271 179-548 48-324 (389)
72 COG2956 Predicted N-acetylgluc 98.9 5.5E-07 1.2E-11 87.0 24.5 310 311-693 47-368 (389)
73 PRK12370 invasion protein regu 98.9 5.3E-08 1.1E-12 109.5 20.6 210 452-671 275-501 (553)
74 KOG0547 Translocase of outer m 98.9 4E-06 8.7E-11 85.5 30.8 81 69-154 120-202 (606)
75 TIGR02521 type_IV_pilW type IV 98.9 1.8E-07 3.9E-12 93.1 21.0 196 403-640 32-234 (234)
76 KOG4162 Predicted calmodulin-b 98.9 3.5E-06 7.5E-11 90.9 30.9 376 267-673 322-750 (799)
77 KOG1129 TPR repeat-containing 98.8 6.2E-08 1.3E-12 93.2 14.2 227 373-672 227-458 (478)
78 KOG2376 Signal recognition par 98.8 2.9E-05 6.3E-10 81.4 34.6 439 71-564 19-514 (652)
79 KOG3616 Selective LIM binding 98.8 1.6E-05 3.5E-10 84.6 32.9 105 411-527 741-847 (1636)
80 PRK11189 lipoprotein NlpI; Pro 98.8 6.2E-07 1.3E-11 92.2 22.5 229 416-654 40-282 (296)
81 KOG3785 Uncharacterized conser 98.8 3.5E-05 7.6E-10 75.5 32.3 284 40-341 29-325 (557)
82 KOG1156 N-terminal acetyltrans 98.8 1.6E-05 3.4E-10 84.2 32.0 459 10-530 19-508 (700)
83 KOG1840 Kinesin light chain [C 98.8 2.4E-07 5.3E-12 99.1 17.8 238 369-637 199-478 (508)
84 KOG0624 dsRNA-activated protei 98.8 5.1E-06 1.1E-10 80.9 24.5 210 273-541 43-258 (504)
85 KOG1127 TPR repeat-containing 98.8 8.6E-06 1.9E-10 90.0 29.1 177 117-295 474-657 (1238)
86 KOG1127 TPR repeat-containing 98.8 5E-05 1.1E-09 84.2 34.7 610 33-669 492-1172(1238)
87 KOG1129 TPR repeat-containing 98.8 1.6E-07 3.4E-12 90.5 13.7 231 333-604 222-456 (478)
88 KOG3617 WD40 and TPR repeat-co 98.6 0.0018 3.9E-08 70.7 39.7 218 11-263 741-993 (1416)
89 KOG1174 Anaphase-promoting com 98.6 6.2E-05 1.3E-09 75.4 26.1 382 271-669 100-497 (564)
90 PF04733 Coatomer_E: Coatomer 98.6 1.5E-06 3.2E-11 88.0 15.2 248 379-671 11-264 (290)
91 PF12569 NARP1: NMDA receptor- 98.5 1.1E-05 2.4E-10 87.7 22.4 261 377-674 12-293 (517)
92 COG3063 PilF Tfp pilus assembl 98.5 6.6E-06 1.4E-10 76.2 17.4 189 478-670 40-234 (250)
93 KOG3617 WD40 and TPR repeat-co 98.5 5.4E-05 1.2E-09 81.9 26.2 404 132-604 724-1172(1416)
94 KOG1156 N-terminal acetyltrans 98.5 0.00016 3.5E-09 76.8 29.4 96 579-674 373-470 (700)
95 KOG1125 TPR repeat-containing 98.5 2E-06 4.3E-11 89.8 14.1 213 452-669 299-524 (579)
96 PF12569 NARP1: NMDA receptor- 98.5 3.9E-05 8.5E-10 83.5 23.9 149 342-497 12-167 (517)
97 TIGR03302 OM_YfiO outer membra 98.4 1E-05 2.3E-10 80.6 17.4 181 472-672 32-232 (235)
98 PRK15359 type III secretion sy 98.4 2.7E-06 5.8E-11 76.8 11.7 121 525-654 14-137 (144)
99 PF12854 PPR_1: PPR repeat 98.4 3E-07 6.4E-12 58.9 3.9 33 572-604 2-34 (34)
100 cd05804 StaR_like StaR_like; a 98.4 0.00011 2.4E-09 78.5 25.7 294 373-672 10-336 (355)
101 PF04733 Coatomer_E: Coatomer 98.4 2.1E-05 4.6E-10 79.7 18.6 49 378-430 111-159 (290)
102 PRK15359 type III secretion sy 98.4 9.2E-06 2E-10 73.3 14.0 105 562-671 14-120 (144)
103 PF12854 PPR_1: PPR repeat 98.4 5E-07 1.1E-11 57.8 3.8 32 468-499 2-33 (34)
104 KOG0548 Molecular co-chaperone 98.3 0.00012 2.7E-09 76.2 22.4 214 443-672 229-455 (539)
105 PRK10370 formate-dependent nit 98.3 1.4E-05 2.9E-10 76.4 14.7 118 554-673 52-174 (198)
106 cd05804 StaR_like StaR_like; a 98.3 0.00024 5.1E-09 75.9 25.9 268 400-672 4-293 (355)
107 PRK15363 pathogenicity island 98.3 8.2E-06 1.8E-10 72.1 11.5 118 577-717 35-154 (157)
108 PRK04841 transcriptional regul 98.3 0.013 2.9E-07 71.2 43.3 366 244-641 348-763 (903)
109 KOG1070 rRNA processing protei 98.3 3.8E-05 8.1E-10 88.0 18.4 199 470-674 1455-1665(1710)
110 KOG4340 Uncharacterized conser 98.3 6.7E-05 1.5E-09 71.8 17.1 178 486-668 125-335 (459)
111 KOG1070 rRNA processing protei 98.3 4.3E-05 9.3E-10 87.6 18.3 242 387-637 1443-1699(1710)
112 KOG4340 Uncharacterized conser 98.2 0.0004 8.6E-09 66.7 21.7 208 281-501 125-338 (459)
113 PLN02789 farnesyltranstransfer 98.2 0.00013 2.8E-09 75.0 20.0 168 482-656 80-268 (320)
114 KOG1125 TPR repeat-containing 98.2 4.4E-05 9.4E-10 80.1 15.4 106 460-569 417-526 (579)
115 PRK04841 transcriptional regul 98.2 0.037 8E-07 67.4 43.4 87 481-569 661-759 (903)
116 KOG1128 Uncharacterized conser 98.2 3.9E-05 8.5E-10 82.5 14.6 186 468-670 393-580 (777)
117 PRK10370 formate-dependent nit 98.1 0.00011 2.4E-09 70.2 16.3 154 480-648 23-183 (198)
118 TIGR00756 PPR pentatricopeptid 98.1 4E-06 8.7E-11 54.6 4.5 35 505-539 1-35 (35)
119 KOG2053 Mitochondrial inherita 98.1 0.029 6.2E-07 62.7 40.5 168 442-616 440-620 (932)
120 TIGR03302 OM_YfiO outer membra 98.1 0.00012 2.7E-09 72.8 16.0 181 438-640 33-234 (235)
121 KOG1128 Uncharacterized conser 98.1 8.6E-05 1.9E-09 80.0 15.3 218 364-604 393-614 (777)
122 KOG1914 mRNA cleavage and poly 98.1 0.024 5.3E-07 59.6 33.0 169 420-592 349-525 (656)
123 KOG0548 Molecular co-chaperone 98.1 0.0015 3.2E-08 68.4 23.2 242 408-666 230-483 (539)
124 COG4783 Putative Zn-dependent 98.0 0.00058 1.3E-08 70.7 20.0 144 506-673 308-455 (484)
125 COG5010 TadD Flp pilus assembl 98.0 0.00014 3E-09 69.2 14.3 134 535-672 62-197 (257)
126 PRK15179 Vi polysaccharide bio 98.0 0.00023 4.9E-09 80.8 18.7 136 503-645 85-224 (694)
127 PRK15179 Vi polysaccharide bio 98.0 0.00016 3.5E-09 81.9 17.5 131 535-670 82-215 (694)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00011 2.3E-09 77.1 14.6 124 540-670 170-295 (395)
129 KOG0624 dsRNA-activated protei 98.0 0.0023 5.1E-08 62.9 22.3 249 478-772 43-314 (504)
130 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 52.6 4.5 35 300-334 1-35 (35)
131 PLN02789 farnesyltranstransfer 98.0 0.00032 6.8E-09 72.1 17.3 184 479-669 43-247 (320)
132 TIGR02552 LcrH_SycD type III s 98.0 4.5E-05 9.8E-10 68.4 10.0 96 577-672 17-114 (135)
133 PRK14720 transcript cleavage f 98.0 0.00029 6.3E-09 80.6 18.0 240 368-662 30-274 (906)
134 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 3.9E-10 51.1 4.5 34 504-537 1-34 (34)
135 COG5010 TadD Flp pilus assembl 97.9 0.00035 7.7E-09 66.5 14.4 150 479-635 72-228 (257)
136 COG4783 Putative Zn-dependent 97.9 0.00078 1.7E-08 69.8 17.3 175 488-669 252-434 (484)
137 PF13812 PPR_3: Pentatricopept 97.8 2.9E-05 6.3E-10 50.1 4.3 33 65-97 2-34 (34)
138 KOG3081 Vesicle coat complex C 97.7 0.0067 1.5E-07 58.0 19.7 152 479-669 114-268 (299)
139 PF01535 PPR: PPR repeat; Int 97.7 4.6E-05 1E-09 47.9 3.5 31 505-535 1-31 (31)
140 TIGR02552 LcrH_SycD type III s 97.7 0.00059 1.3E-08 61.1 11.8 114 526-645 5-121 (135)
141 cd00189 TPR Tetratricopeptide 97.7 0.00027 5.8E-09 58.3 8.9 93 579-671 2-96 (100)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.00083 1.8E-08 70.5 13.8 126 475-607 171-298 (395)
143 KOG3060 Uncharacterized conser 97.6 0.003 6.5E-08 59.8 15.5 160 479-645 58-227 (289)
144 PF01535 PPR: PPR repeat; Int 97.6 8.7E-05 1.9E-09 46.6 3.6 31 300-330 1-31 (31)
145 KOG2053 Mitochondrial inherita 97.6 0.22 4.8E-06 56.0 32.8 213 178-396 21-253 (932)
146 KOG0550 Molecular chaperone (D 97.6 0.00032 7E-09 70.6 9.0 88 584-671 256-349 (486)
147 PRK10153 DNA-binding transcrip 97.5 0.0021 4.6E-08 70.8 15.3 61 609-670 420-480 (517)
148 PLN03088 SGT1, suppressor of 97.5 0.00081 1.8E-08 70.9 11.6 86 586-671 11-98 (356)
149 PF13414 TPR_11: TPR repeat; P 97.5 0.00017 3.7E-09 55.6 4.9 64 608-671 2-66 (69)
150 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0009 1.9E-08 58.2 9.9 94 579-672 4-105 (119)
151 PRK14720 transcript cleavage f 97.5 0.015 3.2E-07 67.1 21.7 241 328-620 24-268 (906)
152 KOG0553 TPR repeat-containing 97.4 0.00088 1.9E-08 65.2 9.9 97 514-649 91-189 (304)
153 PF12895 Apc3: Anaphase-promot 97.4 6.4E-05 1.4E-09 60.7 1.8 77 591-668 3-83 (84)
154 PF09976 TPR_21: Tetratricopep 97.4 0.0022 4.9E-08 58.0 11.7 84 584-668 55-143 (145)
155 PF09976 TPR_21: Tetratricopep 97.4 0.0059 1.3E-07 55.2 14.1 121 509-635 17-144 (145)
156 PF13432 TPR_16: Tetratricopep 97.3 0.00033 7.2E-09 53.2 4.8 57 615-671 3-59 (65)
157 PF13431 TPR_17: Tetratricopep 97.3 0.0001 2.2E-09 47.1 1.6 33 632-664 2-34 (34)
158 KOG0553 TPR repeat-containing 97.3 0.00043 9.3E-09 67.3 6.5 87 585-671 89-177 (304)
159 PRK15331 chaperone protein Sic 97.3 0.0025 5.4E-08 56.9 10.7 89 583-671 43-133 (165)
160 PF04840 Vps16_C: Vps16, C-ter 97.3 0.17 3.7E-06 52.0 25.8 104 480-602 184-287 (319)
161 PF04840 Vps16_C: Vps16, C-ter 97.3 0.21 4.5E-06 51.4 26.4 84 239-324 179-262 (319)
162 KOG3081 Vesicle coat complex C 97.3 0.019 4E-07 55.0 17.0 138 224-364 95-237 (299)
163 CHL00033 ycf3 photosystem I as 97.3 0.0011 2.5E-08 61.7 8.6 93 576-668 34-138 (168)
164 KOG3060 Uncharacterized conser 97.3 0.013 2.8E-07 55.7 14.9 155 507-670 55-218 (289)
165 PRK02603 photosystem I assembl 97.2 0.0019 4.2E-08 60.5 9.7 82 577-658 35-121 (172)
166 COG3898 Uncharacterized membra 97.2 0.13 2.7E-06 52.2 22.1 214 443-669 159-389 (531)
167 KOG1914 mRNA cleavage and poly 97.2 0.41 8.8E-06 50.8 33.1 160 505-669 367-536 (656)
168 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0035 7.7E-08 54.4 10.4 67 580-646 42-113 (119)
169 KOG1538 Uncharacterized conser 97.2 0.048 1E-06 58.4 19.6 97 479-609 709-806 (1081)
170 CHL00033 ycf3 photosystem I as 97.1 0.013 2.8E-07 54.6 14.1 123 504-659 35-167 (168)
171 KOG2041 WD40 repeat protein [G 97.1 0.6 1.3E-05 51.0 27.3 323 251-638 748-1086(1189)
172 PRK02603 photosystem I assembl 97.1 0.0067 1.4E-07 56.8 12.0 130 503-658 34-166 (172)
173 PLN03088 SGT1, suppressor of 97.1 0.0028 6.1E-08 66.9 10.4 100 554-656 15-117 (356)
174 PF05843 Suf: Suppressor of fo 97.1 0.011 2.3E-07 60.2 14.0 144 505-654 2-151 (280)
175 PF13371 TPR_9: Tetratricopept 97.1 0.0013 2.8E-08 51.4 5.6 56 617-672 3-58 (73)
176 PF13432 TPR_16: Tetratricopep 97.1 0.001 2.2E-08 50.5 4.9 61 583-643 3-65 (65)
177 COG4700 Uncharacterized protei 97.0 0.045 9.7E-07 49.4 15.0 130 535-670 85-220 (251)
178 COG4235 Cytochrome c biogenesi 97.0 0.0026 5.7E-08 62.4 7.8 101 575-675 154-259 (287)
179 PRK10866 outer membrane biogen 96.9 0.045 9.8E-07 54.1 16.6 173 479-670 38-239 (243)
180 PF14559 TPR_19: Tetratricopep 96.9 0.00071 1.5E-08 51.9 3.0 51 621-671 3-53 (68)
181 PF14559 TPR_19: Tetratricopep 96.9 0.001 2.2E-08 51.0 3.7 59 591-649 5-65 (68)
182 PF14938 SNAP: Soluble NSF att 96.9 0.058 1.3E-06 55.1 17.5 115 510-641 100-228 (282)
183 PF07079 DUF1347: Protein of u 96.8 0.79 1.7E-05 47.8 28.6 230 432-669 254-521 (549)
184 cd00189 TPR Tetratricopeptide 96.8 0.0081 1.8E-07 49.1 8.8 60 506-569 2-62 (100)
185 PRK10153 DNA-binding transcrip 96.7 0.023 5.1E-07 62.7 13.9 145 500-646 333-490 (517)
186 PF08579 RPM2: Mitochondrial r 96.7 0.016 3.4E-07 47.9 8.9 81 168-249 27-116 (120)
187 PF13414 TPR_11: TPR repeat; P 96.7 0.0031 6.7E-08 48.5 4.9 65 576-640 2-69 (69)
188 PF10037 MRP-S27: Mitochondria 96.7 0.016 3.6E-07 61.2 11.6 118 434-551 62-185 (429)
189 PF12895 Apc3: Anaphase-promot 96.7 0.0047 1E-07 49.7 6.0 77 517-601 2-82 (84)
190 PF05843 Suf: Suppressor of fo 96.7 0.019 4.2E-07 58.3 11.8 142 405-550 4-151 (280)
191 PF08579 RPM2: Mitochondrial r 96.6 0.029 6.2E-07 46.4 10.0 79 68-146 29-116 (120)
192 COG4700 Uncharacterized protei 96.6 0.031 6.7E-07 50.4 10.8 102 570-671 82-188 (251)
193 PRK15363 pathogenicity island 96.5 0.031 6.7E-07 49.9 10.7 89 506-601 37-127 (157)
194 PF14938 SNAP: Soluble NSF att 96.5 1.2 2.6E-05 45.4 24.2 94 509-604 160-264 (282)
195 KOG2796 Uncharacterized conser 96.4 0.12 2.5E-06 49.5 14.3 139 405-546 180-326 (366)
196 PF13428 TPR_14: Tetratricopep 96.4 0.0058 1.3E-07 41.9 4.4 41 611-651 3-43 (44)
197 PRK10803 tol-pal system protei 96.4 0.015 3.3E-07 58.0 9.0 93 579-671 145-245 (263)
198 PF06239 ECSIT: Evolutionarily 96.4 0.036 7.9E-07 51.8 10.5 91 501-592 44-153 (228)
199 PF13371 TPR_9: Tetratricopept 96.4 0.0096 2.1E-07 46.3 6.0 65 585-649 3-69 (73)
200 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.011 2.3E-07 62.0 7.8 62 577-638 75-141 (453)
201 PF10037 MRP-S27: Mitochondria 96.3 0.042 9.1E-07 58.2 12.1 82 168-250 105-186 (429)
202 COG3898 Uncharacterized membra 96.3 0.88 1.9E-05 46.4 20.1 145 517-669 133-289 (531)
203 PF12688 TPR_5: Tetratrico pep 96.3 0.038 8.2E-07 47.4 9.3 86 583-668 7-100 (120)
204 PF06239 ECSIT: Evolutionarily 96.2 0.043 9.4E-07 51.3 9.7 106 52-157 33-161 (228)
205 KOG1538 Uncharacterized conser 96.1 0.83 1.8E-05 49.5 20.0 226 102-426 601-828 (1081)
206 PF12688 TPR_5: Tetratrico pep 96.1 0.087 1.9E-06 45.2 10.8 92 509-602 6-100 (120)
207 KOG4555 TPR repeat-containing 96.0 0.035 7.7E-07 46.8 7.7 90 585-674 51-146 (175)
208 KOG1130 Predicted G-alpha GTPa 95.9 0.015 3.3E-07 58.8 6.2 129 540-670 196-342 (639)
209 KOG2041 WD40 repeat protein [G 95.9 3.6 7.8E-05 45.3 26.6 246 48-327 678-951 (1189)
210 KOG0543 FKBP-type peptidyl-pro 95.8 0.055 1.2E-06 55.4 9.4 63 609-671 257-319 (397)
211 KOG1130 Predicted G-alpha GTPa 95.8 0.31 6.7E-06 49.7 14.4 116 541-658 237-370 (639)
212 KOG0550 Molecular chaperone (D 95.6 2.1 4.5E-05 44.2 19.6 50 515-568 260-314 (486)
213 PF13281 DUF4071: Domain of un 95.5 1.1 2.4E-05 46.7 18.0 160 479-641 147-337 (374)
214 KOG2280 Vacuolar assembly/sort 95.5 5.5 0.00012 44.5 24.4 301 6-323 445-794 (829)
215 PRK11906 transcriptional regul 95.3 0.41 8.8E-06 50.6 14.0 145 520-668 274-432 (458)
216 PF07079 DUF1347: Protein of u 95.3 4.6 0.0001 42.4 35.9 162 9-178 17-206 (549)
217 PRK10803 tol-pal system protei 95.2 0.13 2.7E-06 51.5 9.9 95 515-644 154-252 (263)
218 COG0457 NrfG FOG: TPR repeat [ 95.1 3.6 7.8E-05 39.9 23.2 193 473-671 59-264 (291)
219 KOG2796 Uncharacterized conser 94.9 1.3 2.7E-05 42.8 14.7 164 476-641 139-318 (366)
220 KOG1920 IkappaB kinase complex 94.9 6.9 0.00015 46.2 23.0 155 487-669 894-1052(1265)
221 PF13424 TPR_12: Tetratricopep 94.9 0.031 6.6E-07 44.1 3.6 59 611-669 7-72 (78)
222 PF03704 BTAD: Bacterial trans 94.8 0.069 1.5E-06 48.3 6.4 61 611-671 64-124 (146)
223 COG4235 Cytochrome c biogenesi 94.7 0.32 7E-06 48.1 10.7 30 503-532 155-184 (287)
224 PRK11906 transcriptional regul 94.6 0.33 7.2E-06 51.2 11.2 115 556-670 273-399 (458)
225 PF13424 TPR_12: Tetratricopep 94.5 0.047 1E-06 43.0 3.9 59 507-567 8-72 (78)
226 KOG2280 Vacuolar assembly/sort 94.4 11 0.00024 42.3 30.1 106 479-602 690-795 (829)
227 KOG2114 Vacuolar assembly/sort 94.2 12 0.00027 42.4 25.7 152 174-338 376-529 (933)
228 PF12921 ATP13: Mitochondrial 94.0 0.27 5.9E-06 42.7 7.8 53 571-623 46-102 (126)
229 PLN03098 LPA1 LOW PSII ACCUMUL 94.0 0.23 5E-06 52.3 8.6 64 608-671 74-140 (453)
230 PRK10866 outer membrane biogen 93.9 2.8 6.1E-05 41.5 15.8 59 171-232 37-99 (243)
231 COG5107 RNA14 Pre-mRNA 3'-end 93.9 9.6 0.00021 40.0 26.7 133 504-642 397-535 (660)
232 PF04097 Nic96: Nup93/Nic96; 93.9 9.8 0.00021 43.6 22.1 48 166-216 112-159 (613)
233 PF04184 ST7: ST7 protein; In 93.9 1 2.2E-05 47.8 12.8 190 515-724 179-381 (539)
234 PF13525 YfiO: Outer membrane 93.9 1.7 3.8E-05 41.7 14.0 164 480-664 12-199 (203)
235 PF12921 ATP13: Mitochondrial 93.8 0.52 1.1E-05 40.9 9.0 97 473-587 2-98 (126)
236 PF00515 TPR_1: Tetratricopept 93.7 0.12 2.5E-06 32.9 3.8 32 610-641 2-33 (34)
237 PF09205 DUF1955: Domain of un 93.6 3.4 7.5E-05 35.4 12.9 140 515-675 13-152 (161)
238 KOG0543 FKBP-type peptidyl-pro 93.5 1.4 2.9E-05 45.6 12.7 94 578-671 258-354 (397)
239 PF07719 TPR_2: Tetratricopept 93.4 0.19 4.2E-06 31.7 4.5 33 610-642 2-34 (34)
240 KOG3941 Intermediate in Toll s 93.4 0.9 2E-05 44.2 10.6 113 50-162 51-186 (406)
241 KOG3941 Intermediate in Toll s 93.3 0.78 1.7E-05 44.6 10.0 102 492-594 53-175 (406)
242 PF03704 BTAD: Bacterial trans 93.1 0.49 1.1E-05 42.7 8.4 67 508-578 66-137 (146)
243 smart00299 CLH Clathrin heavy 93.1 2.2 4.8E-05 38.0 12.6 44 442-486 11-54 (140)
244 PF04184 ST7: ST7 protein; In 92.8 5.8 0.00013 42.4 16.3 92 554-645 272-382 (539)
245 PF13525 YfiO: Outer membrane 92.8 3.3 7.2E-05 39.8 14.1 141 507-671 8-169 (203)
246 smart00299 CLH Clathrin heavy 92.7 6.8 0.00015 34.9 15.2 83 105-192 13-95 (140)
247 COG0457 NrfG FOG: TPR repeat [ 92.6 10 0.00023 36.5 22.1 190 446-641 67-268 (291)
248 KOG1941 Acetylcholine receptor 92.5 0.66 1.4E-05 46.7 8.6 162 506-667 85-270 (518)
249 PRK09687 putative lyase; Provi 92.3 14 0.00031 37.4 22.6 76 470-550 203-278 (280)
250 COG1729 Uncharacterized protei 92.2 0.54 1.2E-05 46.0 7.6 89 580-671 145-243 (262)
251 PF13512 TPR_18: Tetratricopep 92.0 1.7 3.7E-05 38.3 9.6 70 587-656 20-97 (142)
252 PF04053 Coatomer_WDAD: Coatom 91.5 1.9 4.1E-05 46.7 11.7 106 542-673 298-403 (443)
253 COG3118 Thioredoxin domain-con 91.4 3.5 7.5E-05 40.9 12.0 114 554-670 147-263 (304)
254 PF04053 Coatomer_WDAD: Coatom 91.4 10 0.00022 41.2 16.9 155 74-261 271-426 (443)
255 PF10300 DUF3808: Protein of u 91.4 6.8 0.00015 43.1 16.0 115 554-671 246-375 (468)
256 PF13170 DUF4003: Protein of u 91.3 3.3 7.2E-05 42.2 12.6 95 489-586 119-226 (297)
257 KOG1920 IkappaB kinase complex 91.3 19 0.00041 42.8 19.4 161 282-503 894-1056(1265)
258 KOG1585 Protein required for f 91.3 7 0.00015 37.6 13.3 87 579-666 152-250 (308)
259 PF07035 Mic1: Colon cancer-as 91.1 10 0.00023 34.6 14.0 135 84-231 14-149 (167)
260 PF10300 DUF3808: Protein of u 90.8 5.6 0.00012 43.8 14.7 79 452-532 247-333 (468)
261 KOG2610 Uncharacterized conser 90.7 5.2 0.00011 40.1 12.5 114 486-603 116-235 (491)
262 PF13428 TPR_14: Tetratricopep 90.7 0.8 1.7E-05 31.1 5.2 36 505-542 2-37 (44)
263 COG3118 Thioredoxin domain-con 90.0 16 0.00034 36.5 15.1 153 512-669 142-299 (304)
264 KOG4234 TPR repeat-containing 90.0 1 2.3E-05 41.5 6.6 89 585-673 103-198 (271)
265 KOG2610 Uncharacterized conser 90.0 3.5 7.6E-05 41.3 10.6 159 516-679 115-283 (491)
266 KOG2066 Vacuolar assembly/sort 89.7 42 0.00091 38.2 24.7 75 237-311 392-467 (846)
267 PF13512 TPR_18: Tetratricopep 89.6 2.1 4.5E-05 37.8 8.0 68 482-551 19-94 (142)
268 KOG1258 mRNA processing protei 89.6 37 0.0008 37.4 28.6 180 472-658 296-490 (577)
269 COG4785 NlpI Lipoprotein NlpI, 89.5 8.3 0.00018 36.3 12.0 175 486-670 78-264 (297)
270 PF00637 Clathrin: Region in C 89.4 0.11 2.4E-06 46.7 0.1 86 340-430 13-98 (143)
271 KOG4648 Uncharacterized conser 89.4 1.5 3.3E-05 43.9 7.7 108 513-662 106-214 (536)
272 COG1729 Uncharacterized protei 89.2 2.2 4.7E-05 41.9 8.6 93 507-604 145-242 (262)
273 PF00515 TPR_1: Tetratricopept 89.0 0.9 1.9E-05 28.7 4.2 32 505-538 2-33 (34)
274 PF13181 TPR_8: Tetratricopept 88.7 0.71 1.5E-05 29.1 3.5 31 611-641 3-33 (34)
275 PF07035 Mic1: Colon cancer-as 88.2 14 0.00029 33.9 12.6 53 274-326 95-147 (167)
276 KOG4555 TPR repeat-containing 87.9 2.1 4.5E-05 36.6 6.5 85 554-641 56-147 (175)
277 PF00637 Clathrin: Region in C 87.9 1.2 2.7E-05 39.8 5.9 86 207-295 12-97 (143)
278 PF13281 DUF4071: Domain of un 87.9 25 0.00054 36.9 15.8 72 374-446 146-225 (374)
279 COG3629 DnrI DNA-binding trans 87.8 2.7 6E-05 41.9 8.5 76 473-548 153-236 (280)
280 PF13176 TPR_7: Tetratricopept 87.7 1.2 2.6E-05 28.7 4.1 27 506-532 1-27 (36)
281 COG4105 ComL DNA uptake lipopr 87.7 25 0.00054 34.4 14.6 140 505-672 35-196 (254)
282 PF14853 Fis1_TPR_C: Fis1 C-te 87.6 2 4.3E-05 30.6 5.4 34 615-648 7-40 (53)
283 PRK15331 chaperone protein Sic 87.3 8 0.00017 35.0 10.3 85 514-603 47-131 (165)
284 KOG4648 Uncharacterized conser 87.2 0.91 2E-05 45.3 4.7 85 585-669 105-191 (536)
285 PF09613 HrpB1_HrpK: Bacterial 86.1 16 0.00034 33.1 11.5 85 554-641 23-109 (160)
286 PF13176 TPR_7: Tetratricopept 85.7 1.3 2.8E-05 28.5 3.4 25 612-636 2-26 (36)
287 COG4649 Uncharacterized protei 85.4 7.9 0.00017 35.1 9.1 57 278-334 68-129 (221)
288 KOG1941 Acetylcholine receptor 85.2 12 0.00026 38.2 11.2 129 509-639 127-276 (518)
289 PF07719 TPR_2: Tetratricopept 85.1 1.9 4.1E-05 27.0 4.0 31 506-538 3-33 (34)
290 PF09613 HrpB1_HrpK: Bacterial 85.0 2.7 6E-05 37.8 6.2 54 620-673 21-74 (160)
291 COG1747 Uncharacterized N-term 84.2 66 0.0014 34.8 16.9 40 742-782 429-470 (711)
292 PF13929 mRNA_stabil: mRNA sta 83.8 37 0.00081 34.0 13.9 112 150-261 143-262 (292)
293 PF08631 SPO22: Meiosis protei 83.8 53 0.0012 33.3 23.7 62 478-539 126-192 (278)
294 COG3947 Response regulator con 83.7 36 0.00077 33.9 13.4 55 617-671 287-341 (361)
295 TIGR02561 HrpB1_HrpK type III 83.3 3.4 7.3E-05 36.5 5.9 53 621-673 22-74 (153)
296 KOG4570 Uncharacterized conser 83.1 7.1 0.00015 38.9 8.6 97 467-569 58-163 (418)
297 COG4105 ComL DNA uptake lipopr 82.8 50 0.0011 32.4 18.5 179 471-671 33-232 (254)
298 PF02259 FAT: FAT domain; Int 82.6 68 0.0015 33.7 18.6 141 502-654 144-303 (352)
299 COG2976 Uncharacterized protei 82.5 39 0.00084 31.6 12.5 113 522-641 70-191 (207)
300 COG3629 DnrI DNA-binding trans 81.7 5.7 0.00012 39.7 7.6 61 611-671 155-215 (280)
301 TIGR02508 type_III_yscG type I 81.3 22 0.00048 29.0 9.1 82 241-338 25-106 (115)
302 PF08631 SPO22: Meiosis protei 81.0 67 0.0014 32.6 20.0 97 238-334 85-192 (278)
303 PF07721 TPR_4: Tetratricopept 81.0 1.3 2.7E-05 26.1 1.8 24 644-667 2-25 (26)
304 COG4785 NlpI Lipoprotein NlpI, 80.9 9.5 0.00021 36.0 8.1 101 554-660 78-181 (297)
305 KOG2114 Vacuolar assembly/sort 80.9 1.2E+02 0.0025 35.2 28.3 117 38-162 339-458 (933)
306 PRK10941 hypothetical protein; 79.9 12 0.00025 37.6 9.2 60 611-670 183-242 (269)
307 PF13170 DUF4003: Protein of u 79.6 31 0.00068 35.2 12.4 86 287-374 122-222 (297)
308 PF13181 TPR_8: Tetratricopept 79.6 2.9 6.3E-05 26.2 3.3 31 506-538 3-33 (34)
309 PF09205 DUF1955: Domain of un 79.4 41 0.0009 29.2 12.1 63 169-233 89-151 (161)
310 PF10602 RPN7: 26S proteasome 79.3 29 0.00063 32.3 11.2 62 66-127 38-101 (177)
311 PF10602 RPN7: 26S proteasome 78.9 27 0.00058 32.6 10.8 59 474-532 37-101 (177)
312 PF11207 DUF2989: Protein of u 78.9 7.8 0.00017 36.4 7.0 70 594-663 123-198 (203)
313 KOG0276 Vesicle coat complex C 78.1 26 0.00055 38.5 11.3 148 485-668 598-746 (794)
314 PF13374 TPR_10: Tetratricopep 76.9 5.4 0.00012 26.2 4.3 28 505-532 3-30 (42)
315 PRK11619 lytic murein transgly 76.7 1.5E+02 0.0033 34.2 28.5 125 517-650 254-383 (644)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 76.4 19 0.00041 29.2 7.4 59 81-141 24-83 (103)
317 KOG0276 Vesicle coat complex C 76.4 16 0.00036 39.9 9.4 100 380-499 648-747 (794)
318 PRK09687 putative lyase; Provi 76.4 92 0.002 31.6 23.4 93 234-327 139-233 (280)
319 KOG4642 Chaperone-dependent E3 75.7 18 0.00039 34.8 8.4 81 591-671 24-106 (284)
320 PF02259 FAT: FAT domain; Int 75.5 54 0.0012 34.5 13.7 64 608-671 145-212 (352)
321 PF10345 Cohesin_load: Cohesin 75.2 1.6E+02 0.0035 33.9 35.0 191 62-263 28-251 (608)
322 PF13431 TPR_17: Tetratricopep 75.0 2.4 5.2E-05 26.9 1.9 21 577-597 13-33 (34)
323 smart00028 TPR Tetratricopepti 74.5 6.8 0.00015 23.2 4.1 31 611-641 3-33 (34)
324 KOG1585 Protein required for f 74.3 89 0.0019 30.4 16.3 82 480-564 157-250 (308)
325 KOG0890 Protein kinase of the 73.2 3.1E+02 0.0067 36.2 29.0 62 609-672 1670-1731(2382)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 72.9 18 0.00039 29.3 6.5 50 600-649 33-82 (103)
327 PF02284 COX5A: Cytochrome c o 72.2 21 0.00045 29.3 6.8 53 597-649 33-85 (108)
328 PF06552 TOM20_plant: Plant sp 71.2 12 0.00025 34.5 5.9 34 625-658 51-84 (186)
329 PF04097 Nic96: Nup93/Nic96; 70.0 2.1E+02 0.0046 32.9 21.1 87 409-501 265-355 (613)
330 KOG1586 Protein required for f 69.0 1.2E+02 0.0025 29.5 13.3 99 555-653 128-241 (288)
331 KOG4570 Uncharacterized conser 68.7 32 0.00069 34.6 8.7 100 28-129 59-165 (418)
332 PF09670 Cas_Cas02710: CRISPR- 67.7 1.8E+02 0.0038 31.1 16.6 54 515-569 142-197 (379)
333 PF02284 COX5A: Cytochrome c o 67.6 28 0.0006 28.6 6.7 60 522-585 28-87 (108)
334 PF13174 TPR_6: Tetratricopept 67.1 7.3 0.00016 23.9 2.9 28 509-538 5-32 (33)
335 KOG1464 COP9 signalosome, subu 67.0 1.3E+02 0.0029 29.5 14.4 237 382-622 40-317 (440)
336 TIGR02508 type_III_yscG type I 66.5 72 0.0016 26.2 9.7 62 480-544 46-107 (115)
337 PF13174 TPR_6: Tetratricopept 66.4 11 0.00023 23.2 3.5 24 618-641 9-32 (33)
338 KOG2063 Vacuolar assembly/sort 65.1 3E+02 0.0064 32.8 20.0 128 404-549 506-636 (877)
339 KOG1464 COP9 signalosome, subu 64.9 1E+02 0.0023 30.3 11.1 183 485-669 39-258 (440)
340 PRK15180 Vi polysaccharide bio 64.9 35 0.00075 36.3 8.5 119 517-641 302-423 (831)
341 smart00028 TPR Tetratricopepti 64.6 13 0.00028 21.9 3.8 31 506-538 3-33 (34)
342 KOG1308 Hsp70-interacting prot 64.5 3.8 8.2E-05 41.4 1.6 84 591-674 128-213 (377)
343 TIGR02561 HrpB1_HrpK type III 64.2 92 0.002 27.8 9.8 65 554-621 23-89 (153)
344 KOG0551 Hsp90 co-chaperone CNS 64.1 20 0.00044 36.2 6.5 91 579-669 83-179 (390)
345 KOG4279 Serine/threonine prote 64.0 41 0.00089 37.9 9.2 179 406-641 205-398 (1226)
346 PRK15180 Vi polysaccharide bio 63.8 49 0.0011 35.2 9.3 137 554-695 302-441 (831)
347 PF13374 TPR_10: Tetratricopep 63.4 15 0.00032 24.0 4.1 24 646-669 5-28 (42)
348 PF13762 MNE1: Mitochondrial s 63.3 56 0.0012 29.1 8.5 49 503-551 78-127 (145)
349 PRK12798 chemotaxis protein; R 63.1 2.1E+02 0.0046 30.4 20.7 178 486-668 125-320 (421)
350 KOG2066 Vacuolar assembly/sort 61.7 3E+02 0.0066 31.8 25.4 168 71-269 363-537 (846)
351 COG2909 MalT ATP-dependent tra 61.3 3.3E+02 0.0072 32.0 17.6 185 484-674 426-649 (894)
352 COG4455 ImpE Protein of avirul 61.2 24 0.00051 33.5 5.9 63 581-643 5-69 (273)
353 COG2976 Uncharacterized protei 60.7 1.5E+02 0.0033 27.9 12.3 87 243-329 95-189 (207)
354 PF11768 DUF3312: Protein of u 60.4 1E+02 0.0023 33.9 11.4 128 477-630 412-544 (545)
355 PF13762 MNE1: Mitochondrial s 60.1 44 0.00095 29.7 7.2 79 34-112 40-128 (145)
356 PF14561 TPR_20: Tetratricopep 60.0 17 0.00036 29.4 4.4 42 630-671 9-50 (90)
357 PF09986 DUF2225: Uncharacteri 59.5 35 0.00075 33.0 7.2 63 609-671 118-193 (214)
358 KOG1586 Protein required for f 58.7 1.8E+02 0.0039 28.2 11.6 18 482-499 23-40 (288)
359 PHA02875 ankyrin repeat protei 57.8 2.2E+02 0.0047 30.8 14.2 142 8-162 9-159 (413)
360 KOG0686 COP9 signalosome, subu 57.5 2.6E+02 0.0056 29.6 15.6 161 474-671 151-332 (466)
361 COG1747 Uncharacterized N-term 57.0 3E+02 0.0064 30.1 21.6 91 404-500 68-158 (711)
362 COG5107 RNA14 Pre-mRNA 3'-end 56.7 2.8E+02 0.0061 29.8 31.7 62 32-93 41-105 (660)
363 PRK13342 recombination factor 56.6 1.8E+02 0.0039 31.5 13.1 45 300-344 228-275 (413)
364 PHA02875 ankyrin repeat protei 56.4 2.9E+02 0.0063 29.8 18.4 78 75-161 10-91 (413)
365 KOG1550 Extracellular protein 56.4 3.2E+02 0.0069 31.0 15.3 82 593-676 344-430 (552)
366 PF11207 DUF2989: Protein of u 55.9 65 0.0014 30.5 7.9 74 521-597 123-198 (203)
367 KOG2297 Predicted translation 55.3 1.8E+02 0.0039 29.4 11.0 160 142-320 174-342 (412)
368 PF14853 Fis1_TPR_C: Fis1 C-te 54.1 38 0.00083 24.1 4.8 37 509-547 6-42 (53)
369 PRK13800 putative oxidoreducta 53.7 4.9E+02 0.011 31.7 24.3 79 265-347 786-865 (897)
370 PRK10941 hypothetical protein; 53.7 60 0.0013 32.6 8.0 68 581-648 185-254 (269)
371 PF15161 Neuropep_like: Neurop 53.6 5.7 0.00012 27.7 0.6 16 768-784 12-27 (65)
372 COG4455 ImpE Protein of avirul 53.6 2.1E+02 0.0046 27.5 11.7 127 506-644 3-140 (273)
373 COG4976 Predicted methyltransf 53.4 20 0.00043 34.2 4.2 58 586-643 4-63 (287)
374 PF13929 mRNA_stabil: mRNA sta 53.2 2.6E+02 0.0055 28.3 13.8 59 131-190 199-262 (292)
375 KOG0376 Serine-threonine phosp 52.4 7.2 0.00016 41.4 1.4 88 554-644 17-107 (476)
376 PF06552 TOM20_plant: Plant sp 52.0 36 0.00077 31.4 5.5 30 520-551 51-81 (186)
377 smart00386 HAT HAT (Half-A-TPR 51.6 23 0.0005 21.4 3.2 29 623-651 1-29 (33)
378 TIGR03504 FimV_Cterm FimV C-te 51.4 33 0.00072 23.3 4.0 25 510-534 5-29 (44)
379 KOG3364 Membrane protein invol 50.8 1.3E+02 0.0028 26.4 8.2 45 625-669 51-97 (149)
380 PF09477 Type_III_YscG: Bacter 50.6 1.5E+02 0.0032 24.8 8.5 79 453-534 21-99 (116)
381 KOG4507 Uncharacterized conser 50.2 45 0.00096 36.6 6.6 97 554-653 620-720 (886)
382 PF13934 ELYS: Nuclear pore co 50.1 1.5E+02 0.0032 29.0 10.0 20 510-529 114-133 (226)
383 PF14427 Pput2613-deam: Pput_2 50.1 47 0.001 27.4 5.2 59 738-796 44-102 (118)
384 COG4649 Uncharacterized protei 49.4 2.2E+02 0.0047 26.3 15.1 119 514-637 68-195 (221)
385 KOG4234 TPR repeat-containing 48.2 1.3E+02 0.0027 28.5 8.3 26 617-642 176-201 (271)
386 KOG3824 Huntingtin interacting 48.2 32 0.00069 34.3 4.8 61 587-647 126-188 (472)
387 KOG0991 Replication factor C, 48.2 2.7E+02 0.0059 27.1 11.2 48 493-541 228-275 (333)
388 PF04910 Tcf25: Transcriptiona 47.5 1.1E+02 0.0024 32.3 9.3 64 608-671 99-167 (360)
389 KOG3824 Huntingtin interacting 46.5 53 0.0011 32.9 6.0 52 554-608 129-182 (472)
390 PF07720 TPR_3: Tetratricopept 46.5 48 0.001 21.3 4.0 30 612-641 4-35 (36)
391 TIGR03504 FimV_Cterm FimV C-te 46.1 43 0.00093 22.8 3.8 25 305-329 5-29 (44)
392 PF11525 CopK: Copper resistan 45.8 8.3 0.00018 28.6 0.4 21 787-807 7-27 (73)
393 PF14669 Asp_Glu_race_2: Putat 45.4 2.7E+02 0.0057 26.2 12.6 89 398-498 104-206 (233)
394 PF10579 Rapsyn_N: Rapsyn N-te 44.9 53 0.0012 25.6 4.6 44 517-562 19-64 (80)
395 PF04190 DUF410: Protein of un 44.6 3.4E+02 0.0073 27.2 12.7 152 177-394 1-166 (260)
396 KOG4718 Non-SMC (structural ma 44.5 5.5 0.00012 36.9 -0.8 10 768-777 180-189 (235)
397 KOG2471 TPR repeat-containing 44.2 2.1E+02 0.0045 31.0 10.1 352 194-619 9-379 (696)
398 PF10366 Vps39_1: Vacuolar sor 42.9 66 0.0014 27.1 5.4 28 505-532 40-67 (108)
399 PF00244 14-3-3: 14-3-3 protei 42.4 1.7E+02 0.0036 28.8 9.1 162 510-673 7-199 (236)
400 KOG0545 Aryl-hydrocarbon recep 42.0 92 0.002 30.3 6.7 87 585-671 186-292 (329)
401 cd08819 CARD_MDA5_2 Caspase ac 41.6 66 0.0014 25.7 4.7 34 249-283 48-81 (88)
402 PF10366 Vps39_1: Vacuolar sor 41.0 1.3E+02 0.0028 25.3 6.9 28 300-327 40-67 (108)
403 PF10345 Cohesin_load: Cohesin 40.6 6.2E+02 0.014 29.1 32.7 49 622-670 547-604 (608)
404 PRK11509 hydrogenase-1 operon 40.0 71 0.0015 28.0 5.3 71 682-769 30-101 (132)
405 PF11848 DUF3368: Domain of un 39.3 96 0.0021 21.5 4.9 33 75-107 13-45 (48)
406 PF08225 Antimicrobial19: Pseu 38.1 19 0.00042 19.5 0.9 12 773-784 10-21 (23)
407 COG5159 RPN6 26S proteasome re 38.0 4.3E+02 0.0094 26.5 12.8 29 513-541 12-40 (421)
408 PF14561 TPR_20: Tetratricopep 37.6 2.1E+02 0.0045 23.1 7.4 62 608-669 21-85 (90)
409 PF09477 Type_III_YscG: Bacter 36.5 2.6E+02 0.0056 23.5 8.2 75 114-192 21-95 (116)
410 PF11846 DUF3366: Domain of un 36.4 98 0.0021 29.3 6.4 36 605-640 140-175 (193)
411 PF11663 Toxin_YhaV: Toxin wit 36.1 43 0.00093 29.1 3.3 32 76-109 107-138 (140)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 35.8 1.4E+02 0.003 25.9 6.6 42 627-668 81-124 (126)
413 PRK13800 putative oxidoreducta 35.5 9E+02 0.02 29.5 25.5 93 471-569 787-880 (897)
414 KOG3364 Membrane protein invol 35.3 2E+02 0.0043 25.3 7.0 32 615-646 77-108 (149)
415 cd08326 CARD_CASP9 Caspase act 35.0 1.5E+02 0.0032 23.6 6.0 61 17-81 18-78 (84)
416 KOG3807 Predicted membrane pro 34.7 2.8E+02 0.0062 28.2 9.0 22 627-648 380-401 (556)
417 TIGR02414 pepN_proteo aminopep 34.6 6.4E+02 0.014 30.4 13.7 88 578-665 741-836 (863)
418 PF06957 COPI_C: Coatomer (COP 34.6 1.4E+02 0.0031 32.0 7.6 107 515-641 215-332 (422)
419 KOG2063 Vacuolar assembly/sort 34.5 8.8E+02 0.019 29.1 17.7 25 168-192 506-530 (877)
420 cd00280 TRFH Telomeric Repeat 34.5 2.2E+02 0.0048 26.5 7.6 30 615-645 117-146 (200)
421 PF11663 Toxin_YhaV: Toxin wit 34.5 42 0.00091 29.2 2.9 33 515-549 106-138 (140)
422 PRK13342 recombination factor 34.3 6.3E+02 0.014 27.3 16.4 44 167-211 228-274 (413)
423 KOG2034 Vacuolar sorting prote 34.2 8.5E+02 0.019 28.8 20.6 88 245-337 366-453 (911)
424 KOG1498 26S proteasome regulat 34.1 5.9E+02 0.013 26.9 16.4 200 469-695 48-264 (439)
425 PF11846 DUF3366: Domain of un 34.0 1.1E+02 0.0023 29.0 6.2 32 573-604 140-171 (193)
426 KOG0292 Vesicle coat complex C 34.0 2.9E+02 0.0063 32.4 9.9 53 592-644 1062-1119(1202)
427 TIGR02710 CRISPR-associated pr 33.6 5E+02 0.011 27.6 11.2 30 513-542 139-168 (380)
428 PRK14015 pepN aminopeptidase N 33.5 6.4E+02 0.014 30.5 13.5 88 578-665 751-846 (875)
429 PF10579 Rapsyn_N: Rapsyn N-te 33.1 69 0.0015 25.0 3.6 46 554-599 19-65 (80)
430 KOG0292 Vesicle coat complex C 33.1 73 0.0016 36.9 5.3 73 586-669 652-724 (1202)
431 cd08819 CARD_MDA5_2 Caspase ac 33.0 2.6E+02 0.0056 22.4 6.9 38 146-185 48-85 (88)
432 KOG4279 Serine/threonine prote 33.0 2.4E+02 0.0051 32.3 8.9 27 771-797 490-516 (1226)
433 KOG4642 Chaperone-dependent E3 32.6 4.2E+02 0.0091 26.0 9.4 79 485-567 22-104 (284)
434 TIGR02270 conserved hypothetic 32.5 6.7E+02 0.015 27.1 22.8 50 234-283 158-207 (410)
435 KOG4077 Cytochrome c oxidase, 32.2 1.9E+02 0.004 25.0 6.2 59 523-585 68-126 (149)
436 PRK10564 maltose regulon perip 31.6 83 0.0018 31.8 4.9 41 302-342 260-300 (303)
437 PF11848 DUF3368: Domain of un 31.4 1.6E+02 0.0035 20.4 5.0 34 309-342 12-45 (48)
438 KOG4077 Cytochrome c oxidase, 31.2 2E+02 0.0044 24.8 6.3 40 600-639 75-114 (149)
439 PRK10564 maltose regulon perip 31.1 91 0.002 31.5 5.1 45 502-546 254-299 (303)
440 PF07575 Nucleopor_Nup85: Nup8 31.1 2.7E+02 0.0058 31.8 9.7 71 289-361 395-465 (566)
441 PF12862 Apc5: Anaphase-promot 30.9 1.1E+02 0.0023 24.9 4.8 51 620-670 9-68 (94)
442 PF14863 Alkyl_sulf_dimr: Alky 30.8 1.5E+02 0.0032 26.4 5.9 47 616-662 77-123 (141)
443 PF14689 SPOB_a: Sensor_kinase 29.1 89 0.0019 23.1 3.6 24 509-532 28-51 (62)
444 COG4890 Predicted outer membra 28.9 25 0.00055 21.8 0.6 10 747-756 11-20 (37)
445 PF12968 DUF3856: Domain of Un 28.7 2.8E+02 0.006 23.8 6.6 66 236-325 54-126 (144)
446 PF07163 Pex26: Pex26 protein; 28.7 3.8E+02 0.0082 26.9 8.6 19 409-427 90-108 (309)
447 PF02847 MA3: MA3 domain; Int 28.5 1.4E+02 0.0031 25.0 5.5 25 273-297 7-31 (113)
448 PRK11619 lytic murein transgly 28.2 9.9E+02 0.021 27.7 38.3 263 140-429 105-373 (644)
449 PF15469 Sec5: Exocyst complex 28.1 4.9E+02 0.011 24.2 9.6 25 623-647 153-177 (182)
450 COG3947 Response regulator con 27.8 1.7E+02 0.0036 29.5 6.1 53 479-531 285-340 (361)
451 PF08311 Mad3_BUB1_I: Mad3/BUB 27.8 4E+02 0.0088 23.1 8.4 43 456-498 81-124 (126)
452 TIGR02270 conserved hypothetic 27.7 8.1E+02 0.017 26.5 21.2 26 476-501 255-280 (410)
453 PF11123 DNA_Packaging_2: DNA 27.0 2.6E+02 0.0055 21.5 5.5 59 488-569 12-73 (82)
454 smart00544 MA3 Domain in DAP-5 26.9 3.4E+02 0.0073 22.7 7.5 23 274-296 8-30 (113)
455 COG5431 Uncharacterized metal- 26.5 20 0.00043 29.1 -0.2 12 800-811 46-57 (117)
456 KOG3507 DNA-directed RNA polym 26.1 25 0.00054 25.1 0.2 12 767-778 18-29 (62)
457 PF09454 Vps23_core: Vps23 cor 26.0 1.5E+02 0.0032 22.3 4.3 50 61-111 5-54 (65)
458 PF14376 Haem_bd: Haem-binding 25.8 22 0.00048 31.4 -0.1 9 769-777 41-49 (137)
459 cd02679 MIT_spastin MIT: domai 25.3 47 0.001 26.0 1.7 41 622-671 21-67 (79)
460 PF14689 SPOB_a: Sensor_kinase 25.3 1E+02 0.0022 22.8 3.4 25 303-327 27-51 (62)
461 cd08332 CARD_CASP2 Caspase act 25.1 2.5E+02 0.0053 22.7 5.8 58 17-78 22-79 (90)
462 COG2912 Uncharacterized conser 25.0 4.9E+02 0.011 26.0 8.9 53 617-669 189-241 (269)
463 PF14669 Asp_Glu_race_2: Putat 24.9 5.9E+02 0.013 24.0 15.1 95 290-394 98-206 (233)
464 PF01147 Crust_neurohorm: Crus 24.6 21 0.00046 27.3 -0.3 14 767-780 18-31 (73)
465 PF07163 Pex26: Pex26 protein; 23.7 6.9E+02 0.015 25.2 9.4 55 71-127 90-146 (309)
466 PF10475 DUF2450: Protein of u 23.5 3.5E+02 0.0077 27.6 8.1 49 277-327 107-155 (291)
467 cd08326 CARD_CASP9 Caspase act 23.4 1.1E+02 0.0023 24.4 3.4 30 251-280 44-73 (84)
468 PF12968 DUF3856: Domain of Un 22.5 4.3E+02 0.0094 22.7 6.7 20 650-669 107-126 (144)
469 KOG4507 Uncharacterized conser 22.5 3.6E+02 0.0079 30.0 7.9 132 535-671 567-704 (886)
470 PF11768 DUF3312: Protein of u 22.4 4.3E+02 0.0093 29.4 8.6 56 37-92 412-472 (545)
471 PHA03100 ankyrin repeat protei 22.4 1.1E+03 0.023 26.0 17.4 21 39-59 38-58 (480)
472 smart00777 Mad3_BUB1_I Mad3/BU 22.3 3.3E+02 0.0073 23.6 6.4 41 560-601 82-123 (125)
473 COG4976 Predicted methyltransf 22.2 1.4E+02 0.003 28.9 4.3 55 620-674 6-60 (287)
474 smart00777 Mad3_BUB1_I Mad3/BU 21.8 3.5E+02 0.0075 23.5 6.4 39 629-667 83-123 (125)
475 COG4896 Uncharacterized protei 21.8 41 0.00088 24.3 0.6 23 760-786 26-50 (68)
476 COG5191 Uncharacterized conser 21.8 81 0.0017 31.8 2.8 78 573-650 103-183 (435)
477 COG2178 Predicted RNA-binding 21.2 7E+02 0.015 23.6 8.4 51 482-532 38-97 (204)
478 KOG4521 Nuclear pore complex, 21.0 1.6E+03 0.035 27.8 13.0 109 480-594 927-1071(1480)
479 PF02847 MA3: MA3 domain; Int 20.9 3.2E+02 0.007 22.8 6.3 23 407-429 7-29 (113)
480 PF11838 ERAP1_C: ERAP1-like C 20.7 9.2E+02 0.02 24.7 18.4 215 333-566 17-262 (324)
481 PHA03100 ankyrin repeat protei 20.6 1.1E+03 0.025 25.7 15.6 16 246-261 182-197 (480)
482 COG4855 Uncharacterized protei 20.5 38 0.00082 24.9 0.3 10 771-780 65-74 (76)
483 PF09045 L27_2: L27_2; InterP 20.2 1.6E+02 0.0035 21.3 3.3 34 705-758 5-38 (58)
484 PF00322 Endothelin: Endotheli 20.0 45 0.00097 20.4 0.4 8 804-811 4-11 (31)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.5e-153 Score=1348.90 Aligned_cols=768 Identities=32% Similarity=0.581 Sum_probs=755.3
Q ss_pred hhhHHhHhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 040319 2 FNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREE 81 (812)
Q Consensus 2 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 81 (812)
..++++|.+.+.+..|.++|+.+++.|..++..++|.|+.+|+++|+++.|.++|++|++||+++||+||++|++.|+++
T Consensus 90 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~ 169 (857)
T PLN03077 90 VALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFD 169 (857)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcC
Q 040319 82 EAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDEL 161 (812)
Q Consensus 82 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~ 161 (812)
+|+++|++|...|+.||..||+++|++|++.+++..+.++|..+.+.|+.||+.++|+||.+|+++| +++.|.++|++|
T Consensus 170 ~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m 248 (857)
T PLN03077 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRM 248 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHH
Q 040319 162 PHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNN 241 (812)
Q Consensus 162 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 241 (812)
++||.++||+||.+|++.|++++|+++|++| ...|+.||..||++++.+|++.|+++.|.++|..+.+.|+.||..+||
T Consensus 249 ~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 249 PRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHH
Q 040319 242 ALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGL 321 (812)
Q Consensus 242 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l 321 (812)
+||.+|+++|++++|.+ +|++|.+||+++||+||.+|++.|++++|+++
T Consensus 328 ~Li~~y~k~g~~~~A~~-------------------------------vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEK-------------------------------VFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHHHHHhcCCHHHHHH-------------------------------HHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999 88889999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCc
Q 040319 322 FVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDD 401 (812)
Q Consensus 322 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 401 (812)
|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|++|. .++
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d- 454 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKD- 454 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 666
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
+++||+||.+|+++|+.++|+.+|++|.. +++||.+||+++|.+|++.|.++.++++|..+.+.|+.+|..++|+|++
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 99999999999999999999999999985 5999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHH
Q 040319 482 MYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
+|+|+|++++|.++|+.+ .||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++ .|++++|.
T Consensus 533 ~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~--~g~v~ea~ 609 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR--SGMVTQGL 609 (857)
T ss_pred HHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh--cChHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
++|++|.+++|+.|+..||++|+++|+|+|++++|++++++|+++||..+|++|+++|+.+|+++.|+.+++++++++|+
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 99999997799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 040319 642 DPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGY 721 (812)
Q Consensus 642 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~ 721 (812)
+++.|+.|+|+|++.|+|++|.++++.|+++|++|+||+||||+++++|.|.+||.+||+.++||..|++|..+|++.||
T Consensus 690 ~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~ 769 (857)
T PLN03077 690 SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769 (857)
T ss_pred CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCCCcEEEEcccccccchhhHHHHhhhhcceEEEEecCCccccc
Q 040319 722 VPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHF 801 (812)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~n~~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f 801 (812)
+||+++++ +++||+|++.|++||||||||||||+||+|+||||+||||||+|||+++||||++++|||||||++|||||
T Consensus 770 ~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f 848 (857)
T PLN03077 770 AGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHF 848 (857)
T ss_pred CCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeC
Confidence 99999988 55889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCC
Q 040319 802 LNGQCSCKD 810 (812)
Q Consensus 802 ~~g~csc~~ 810 (812)
+||+|||||
T Consensus 849 ~~g~csc~d 857 (857)
T PLN03077 849 KDGECSCGD 857 (857)
T ss_pred CCCcccCCC
Confidence 999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-129 Score=1124.83 Aligned_cols=614 Identities=34% Similarity=0.607 Sum_probs=603.5
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 040319 163 HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNA 242 (812)
Q Consensus 163 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 242 (812)
.++.++|+.+|.+|.+.|++++|+++|+.|....++.||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 45788999999999999999999999999943345889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 040319 243 LIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLF 322 (812)
Q Consensus 243 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~ 322 (812)
|+++|+++|++++|.+ +|++|++||.++||++|.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~-------------------------------lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARR-------------------------------LFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHH-------------------------------HHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce
Q 040319 323 VKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS 402 (812)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~ 402 (812)
++|.+.|+.||..||+.++.+|+..+..+.+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+ .++ +
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~-~ 290 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKT-T 290 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCC-h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 666 9
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 482 (812)
++||+||.+|++.|++++|+++|++|.. .|+.||..||++++.+|++.|.++.|.++|..|.+.|+.||..++++|+++
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHH
Q 040319 483 YFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRK 562 (812)
Q Consensus 483 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~ 562 (812)
|+|+|++++|.++|++|.+||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++ .|++++|.+
T Consensus 370 y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~--~g~~~~a~~ 447 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY--SGLSEQGWE 447 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc--CCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 563 LFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 563 ~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
+|+.|.+++|+.|+..||++||++|+++|++++|.+++++|+++|+..+|++|+.+|+.+|+++.|+.+++++++++|++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 040319 643 PATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYV 722 (812)
Q Consensus 643 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 722 (812)
...|..|+++|++.|+|++|.+++++|+++|++|.||+|||++++++|.|++||.+||+..+||.+|.+|..+|++.||+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCCCcEEEEcccccccchhhHHHHhhhhcceEEEEecCCcccccc
Q 040319 723 PDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFL 802 (812)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~n~~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~ 802 (812)
||+++++||+++++|+..+++||||||||||||++|+|+||||+||||||+|||+++||||+++||||||||++|||||+
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 687 (697)
T PLN03081 608 AEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFK 687 (697)
T ss_pred CCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCC
Q 040319 803 NGQCSCKDYW 812 (812)
Q Consensus 803 ~g~csc~~~w 812 (812)
||+|||||||
T Consensus 688 ~g~csc~d~w 697 (697)
T PLN03081 688 LGKCSCGDYW 697 (697)
T ss_pred CCcccccccC
Confidence 9999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-82 Score=748.04 Aligned_cols=686 Identities=25% Similarity=0.415 Sum_probs=605.8
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH
Q 040319 60 SSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNA 139 (812)
Q Consensus 60 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 139 (812)
..++..++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..+++.++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChH
Q 040319 140 LMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLM 219 (812)
Q Consensus 140 li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~ 219 (812)
||.+|+++| +++.|.++|++|++||+++||+||.+|++.|++++|+++|++| ...|+.||.+||++++++|+..+++.
T Consensus 127 li~~~~~~g-~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M-~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 127 MLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM-LWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHhCC-ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHhCCccchh
Confidence 999999999 9999999999999999999999999999999999999999999 88899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCc
Q 040319 220 EGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNS 299 (812)
Q Consensus 220 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~ 299 (812)
.+.++|..+.+.|+.||..++|+||++|+++|++++|.+ +|++|+++|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~-------------------------------lf~~m~~~d~ 253 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL-------------------------------VFDRMPRRDC 253 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH-------------------------------HHhcCCCCCc
Confidence 999999999999999999999999999999999999999 8999999999
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHH
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDML 379 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 379 (812)
++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.++++.+.++|..+.+.|+.||..+||+|+++|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHH
Q 040319 380 TRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQ 459 (812)
Q Consensus 380 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 459 (812)
+++|++++|.++|++|. .++ +++||+||.+|++.|++++|+++|++|.. .|+.||..||++++.+|++.|+++.|.+
T Consensus 334 ~k~g~~~~A~~vf~~m~-~~d-~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 334 LSLGSWGEAEKVFSRME-TKD-AVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HhcCCHHHHHHHHhhCC-CCC-eeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 99999999999999998 665 99999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 040319 460 IHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA 539 (812)
Q Consensus 460 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 539 (812)
+|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. ++.||.
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~ 489 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNS 489 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 699999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSC 619 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 619 (812)
+||+.+|.+|++ .|.+++|.+++..+.+ .|+.|+..++++|+++|+++|++++|+++|++| +||..+|++++.+|
T Consensus 490 ~t~~~lL~a~~~--~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~ 564 (857)
T PLN03077 490 VTLIAALSACAR--IGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGY 564 (857)
T ss_pred hHHHHHHHHHhh--hchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHH
Confidence 999999999999 9999999999999997 899999999999999999999999999999999 89999999999999
Q ss_pred HhcCCHHHHHHHHHHHHcc--CCCCCchHHHHHhhhhhCCCcchHHHHHHHHH-hCCCCCCCceeEEEECCEEEEEeeCC
Q 040319 620 RIRLNTTIGKRVAKHILAM--EPQDPATYILVSNLYSSSGRWHNSELVREDMR-EKGFRKHPSRSWIIHQNKVHSFYVRD 696 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~f~~~~ 696 (812)
.++|+.++|..+++++.+. .| |..+|..+...|.+.|++++|.++++.|+ +.|+.+.... + +- .+..-
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~-y----~~---lv~~l 635 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH-Y----AC---VVDLL 635 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH-H----HH---HHHHH
Confidence 9999999999999999874 56 47789999999999999999999999998 5677654210 0 00 00000
Q ss_pred CCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhh-----hHHHH-HHHhhcCCCCCCcEEEEcccc
Q 040319 697 KSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYH-----SAKLA-ATYGLLTTPAGQPVRIVKNIL 770 (812)
Q Consensus 697 ~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h-----se~la-~~~~~~~~~~~~~~~~~~n~~ 770 (812)
..-... .+..++.++| ...||....-.-+. ....| -|+.| ..+.+....++..+.+.+=.-
T Consensus 636 ~r~G~~----~eA~~~~~~m---~~~pd~~~~~aLl~------ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 636 GRAGKL----TEAYNFINKM---PITPDPAVWGALLN------ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HhCCCH----HHHHHHHHHC---CCCCCHHHHHHHHH------HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 001111 2223344444 46676532100000 00011 12222 224443333333333223234
Q ss_pred cccchhhHHHHhhhhcceEE-------EEecCCccccccCCccCCC
Q 040319 771 TCGDCHSFLKYVSVVTRREI-------FLRDASGFHHFLNGQCSCK 809 (812)
Q Consensus 771 ~c~~ch~~~k~~s~~~~r~i-------~~rd~~~~h~f~~g~csc~ 809 (812)
-.++...+.|......++.| .|.-.+..|-|..|.-|..
T Consensus 703 ~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~ 748 (857)
T PLN03077 703 DAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP 748 (857)
T ss_pred HCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence 56888899999888877765 2333578999988876543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-68 Score=617.89 Aligned_cols=474 Identities=25% Similarity=0.436 Sum_probs=456.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH
Q 040319 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEG-IVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNA 139 (812)
Q Consensus 61 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 139 (812)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.++|..|.+.|+.||+.++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChH
Q 040319 140 LMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLM 219 (812)
Q Consensus 140 li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~ 219 (812)
|+.+|+++| +++.|.++|++|++||.++||+||.+|++.|++++|+++|++| ...|+.||..||+.++.+|+..|..+
T Consensus 164 Li~~y~k~g-~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKCG-MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcCC-CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999 9999999999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCc
Q 040319 220 EGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNS 299 (812)
Q Consensus 220 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~ 299 (812)
.+.++|..+.+.|+.+|..++|+||++|+++|++++|.+ +|++|+++|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~-------------------------------vf~~m~~~~~ 290 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC-------------------------------VFDGMPEKTT 290 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH-------------------------------HHHhCCCCCh
Confidence 999999999999999999999999999999999999999 8888999999
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHH
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDML 379 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 379 (812)
++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.|.+.|+.||..++++||++|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHH
Q 040319 380 TRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQ 459 (812)
Q Consensus 380 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 459 (812)
+++|++++|.++|++|. .++ +++||+||.+|++.|+.++|+++|++|.. .|+.||.+||++++.+|++.|.+++|.+
T Consensus 371 ~k~G~~~~A~~vf~~m~-~~d-~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 371 SKWGRMEDARNVFDRMP-RKN-LISWNALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHCCCHHHHHHHHHhCC-CCC-eeeHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999998 665 99999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHH-hCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040319 460 IHSYALK-TGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP 537 (812)
Q Consensus 460 ~~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 537 (812)
+++.|.+ .|+.|+..+|++++++|++.|++++|.++|++|.. ||..+|++|+.+|..+|+.+.|..+++++.+ +.|
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p 525 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGP 525 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCC
Confidence 9999986 69999999999999999999999999999999975 9999999999999999999999999999976 778
Q ss_pred CH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC
Q 040319 538 DA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP 575 (812)
Q Consensus 538 d~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p 575 (812)
+. .+|+.++..|+. .|++++|.++++.|++ .|+.+
T Consensus 526 ~~~~~y~~L~~~y~~--~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 526 EKLNNYVVLLNLYNS--SGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred CCCcchHHHHHHHHh--CCCHHHHHHHHHHHHH-cCCcc
Confidence 64 789999999999 9999999999999987 66653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-68 Score=615.77 Aligned_cols=531 Identities=14% Similarity=0.203 Sum_probs=474.2
Q ss_pred cCCCccchHHHHHHHHccCChhhHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 040319 29 LEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNV-----VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFV 103 (812)
Q Consensus 29 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 103 (812)
..++...|..++..+++.|++++|.++|+.|+.++. ..++.++.+|.+.|..++|+.+|..|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 456778899999999999999999999999986554 4556777889999999999999999974 9999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCC----CCCcchHHHHHHHHHcC
Q 040319 104 AILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELP----HKDTVSWNTVISSVVNE 179 (812)
Q Consensus 104 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~ 179 (812)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++| +++.|.++|++|. .||.++||+||.+|++.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999 9999999999998 58999999999999999
Q ss_pred CChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCChHHHH
Q 040319 180 FEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIR--IGLGANLSVNNALIGFYTKCGRVKDVV 257 (812)
Q Consensus 180 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 257 (812)
|++++|+++|+.| ...|+.||..||+.+|.+|++.|+++.|.++|++|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 521 G~~eeAl~lf~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 521 GQVAKAFGAYGIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred cCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999 8899999999999999999999999999999999986 678999999999999999999999999
Q ss_pred HHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH
Q 040319 258 ALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTL 337 (812)
Q Consensus 258 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 337 (812)
++|+.|.+.+ ..|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 600 elf~~M~e~g---------------------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 600 EVYQMIHEYN---------------------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred HHHHHHHHcC---------------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9554432221 1467899999999999999999999999999999999999999
Q ss_pred HHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCCceeeeHHHHHHHHHc
Q 040319 338 TSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPT--DRDDSIIWTSMICGYARS 415 (812)
Q Consensus 338 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~~li~~~~~~ 415 (812)
+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++||.+|+++|++++|.++|++|.. ..||.++||+||.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999852 256799999999999999
Q ss_pred CChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHh----hhcCCHHH
Q 040319 416 GKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMY----FKCCNMSN 491 (812)
Q Consensus 416 g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y----~k~g~~~~ 491 (812)
|++++|+++|++|.. .|+.||..||++++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++ .+++...+
T Consensus 733 G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 733 NQLPKALEVLSEMKR-LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999998 9999999999999999999999999999999999999999999999999874 44555555
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc
Q 040319 492 AIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY 571 (812)
Q Consensus 492 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~ 571 (812)
+...|+.+...+...|+ ++|+.+|++|++.|+.||.+||+.+|.++.. .+....+..+++.|.. .
T Consensus 812 ~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~--~~~~~~~~~m~~~m~~-~ 876 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCLQL--PHDATLRNRLIENLGI-S 876 (1060)
T ss_pred hhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc--cccHHHHHHHHHHhcc-C
Confidence 55555544434444554 4699999999999999999999999977666 7888888888877764 5
Q ss_pred CccCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHH
Q 040319 572 NIEPTSEHYASLVSVLGYWGFLEEAEETINNMP---FQPKVS 610 (812)
Q Consensus 572 ~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~---~~p~~~ 610 (812)
+..|+..+|+++|+++++. .++|..++++|. +.|+..
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 6777889999999998542 478999999986 667654
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-64 Score=583.32 Aligned_cols=504 Identities=15% Similarity=0.223 Sum_probs=386.0
Q ss_pred CCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcc-----hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchH
Q 040319 131 VDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTV-----SWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTI 205 (812)
Q Consensus 131 ~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 205 (812)
.++...+..++..+++.| ++++|.++|++|++++.. .++.++.+|.+.|..++|+.+|+.| .. ||..||
T Consensus 367 ~~~~~~~~~~y~~l~r~G-~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDG-RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-RN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHHHHHHCc-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc-CC----CCHHHH
Confidence 344455555555566666 666666666666554433 3334445566666666666666666 32 666666
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChh
Q 040319 206 STLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVD 285 (812)
Q Consensus 206 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~ 285 (812)
+.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|++++|.+
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~--------------------------- 493 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE--------------------------- 493 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH---------------------------
Confidence 66666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhccCC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHH
Q 040319 286 LAVEIFDKMP----EKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVM 361 (812)
Q Consensus 286 ~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 361 (812)
+|++|. .||.++|++||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.
T Consensus 494 ----vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 494 ----VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred ----HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333333 356666777777777777777777777777777777887788888888777777777877777776
Q ss_pred H--hcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC
Q 040319 362 K--FGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD--RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD 437 (812)
Q Consensus 362 ~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 437 (812)
+ .|+.||..+|++||++|+++|++++|.++|+.|... +++..+||++|.+|++.|++++|+++|++|.. .|+.||
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD 648 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPD 648 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC
Confidence 5 567788888888888888888888888888887632 34578888888888888888888888888888 888888
Q ss_pred hhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCC----CCChhHHHHHHHH
Q 040319 438 EIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP----SHDIVSWNGLIAG 513 (812)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~ 513 (812)
..||++++.+|++.|+++.|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|. .||+.+||+||.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888889999999999999999998888885 4888889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHh----h
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLG----Y 589 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~----~ 589 (812)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++ .|++++|.++|+.|.+ .|+.|+..+|+++++++. +
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k--~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~k 805 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER--KDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEK 805 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888999999999988888 8889999999988886 788888888888887633 2
Q ss_pred c-------------------CChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-ccCCCCCchH
Q 040319 590 W-------------------GFLEEAEETINNMP---FQPKVSVWRALLDSCRIRLNTTIGKRVAKHIL-AMEPQDPATY 646 (812)
Q Consensus 590 ~-------------------g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~ 646 (812)
+ +..++|+.+|++|. +.||..+|.+++.++.+.+..+.+..+++.+. .-.+.+..+|
T Consensus 806 a~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y 885 (1060)
T PLN03218 806 ACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL 885 (1060)
T ss_pred HhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh
Confidence 2 23467999999987 88999999999977778888888888876643 2234467788
Q ss_pred HHHHhhhhhCCCc-chHHHHHHHHHhCCCCCCC
Q 040319 647 ILVSNLYSSSGRW-HNSELVREDMREKGFRKHP 678 (812)
Q Consensus 647 ~~l~~~y~~~g~~-~~a~~~~~~m~~~g~~~~~ 678 (812)
..|.+.+ |++ ++|..++++|...|+.+..
T Consensus 886 ~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 886 STLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 9998877 444 5899999999999997664
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.9e-34 Score=345.34 Aligned_cols=649 Identities=13% Similarity=0.036 Sum_probs=463.9
Q ss_pred HhHhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCC---CCChhhHHHHHHHHHhcCChhH
Q 040319 6 RLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS---SPNVVSFTSLISGLAKLGREEE 82 (812)
Q Consensus 6 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 82 (812)
..+...|++..|..++..+++.. +.+...+..+...+...|++++|...|+... ..+...+..++..+...|++++
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 167 QLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34455666666666666665543 3344555555666666666666666665542 2344455555555556666666
Q ss_pred HHHHHHHHHHCCCC--------------------------------CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 040319 83 AIELFFRMRSEGIV--------------------------------PN-EHSFVAILTACIRLLELELGFQIHALIVKMG 129 (812)
Q Consensus 83 a~~~~~~m~~~g~~--------------------------------p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 129 (812)
|...++.+.+.... |+ ...+..+...+...|+++.|...+..+.+..
T Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 325 (899)
T TIGR02917 246 AEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325 (899)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66555555443211 11 1112222233445556666666666555543
Q ss_pred CCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCC-CcchH
Q 040319 130 CVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPH---KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTV-DYFTI 205 (812)
Q Consensus 130 ~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~ 205 (812)
+.+......+...+.+.| +.+.|...++.+.. .+...|+.+...+.+.|++++|.+.|+++ .. ..| +...+
T Consensus 326 -p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~~ 400 (899)
T TIGR02917 326 -PNSHQARRLLASIQLRLG-RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA-TE--LDPENAAAR 400 (899)
T ss_pred -CCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCCCCHHHH
Confidence 234455556666677777 77777777766542 34556777777777777777777777776 32 223 33345
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCcchhHHHHHHHHHhhC
Q 040319 206 STLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMP---VMDIITLTEIIIAYMEFG 282 (812)
Q Consensus 206 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g 282 (812)
..+...+...|+.+.|.+.+..+.+... ........++..|.+.|++++|..+++.+. ..+..+|..+...|...|
T Consensus 401 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 479 (899)
T TIGR02917 401 TQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG 479 (899)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC
Confidence 5556666677777777777777776542 233445566777778888888888777764 235567788888888888
Q ss_pred ChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhh
Q 040319 283 YVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGF 359 (812)
Q Consensus 283 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 359 (812)
++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.+.+...+..
T Consensus 480 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888887643 344566677778888888888888888887754 23556677777777778888888888888
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-C
Q 040319 360 VMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-D 437 (812)
Q Consensus 360 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~ 437 (812)
+.+.+ +.+...+..+...|.+.|++++|..+++.+... +++...|..+...|.+.|++++|+..|+++.. ..| +
T Consensus 559 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~ 634 (899)
T TIGR02917 559 AAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA---LQPDS 634 (899)
T ss_pred HHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC
Confidence 77654 345566777888888888888888888877532 33466788888888888999999998888876 334 3
Q ss_pred hhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHH
Q 040319 438 EIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGH 514 (812)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 514 (812)
...+..+...+...|+++.|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+ ++...|..+...+
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHH
Confidence 4456677778888888999988888887743 34577888888889999999999998888765 4567788888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
...|++++|++.|+++.. ..|+..++..+..++.. .|++++|.+.++.+.+. .+.+...+..+..+|.+.|+.+
T Consensus 714 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLA--SGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHH--CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHH
Confidence 999999999999999988 56777777778888888 89999999999888763 3445788889999999999999
Q ss_pred HHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 595 EAEETINNMP-F-QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 595 ~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+|.+.++++. . +++..++..+...+...|+ .+|...+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 788 KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999875 3 4467889999999999999 77999999999999999999999999999999999999999998665
Q ss_pred CC
Q 040319 673 GF 674 (812)
Q Consensus 673 g~ 674 (812)
+.
T Consensus 867 ~~ 868 (899)
T TIGR02917 867 AP 868 (899)
T ss_pred CC
Confidence 43
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.3e-34 Score=344.54 Aligned_cols=583 Identities=13% Similarity=0.026 Sum_probs=495.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcC
Q 040319 69 SLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFS 148 (812)
Q Consensus 69 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 148 (812)
.+...+...|++++|...|++..+.. +.+...+..+...+.+.|+++.|...+..+.+.. +.+...+..+...|.+.|
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCC
Confidence 34445667788888888888877653 3456677778888999999999999999988765 456778888999999999
Q ss_pred CCHHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHH
Q 040319 149 FCLDYLLKLFDELPH---KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVH 225 (812)
Q Consensus 149 ~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 225 (812)
+.+.|.+.|+++.+ .+...|..+...+...|++++|++.|+.+ ..... .+......++..+...|+.+.|.+++
T Consensus 378 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 378 -DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA-AQLDP-ELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred -CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH-HhhCC-cchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999998753 35677888889999999999999999988 43321 22344556777888999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCcchhHHHHHHHHHhhCChhHHHHHhccCCC---CCc
Q 040319 226 AHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMP---VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNS 299 (812)
Q Consensus 226 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~ 299 (812)
..+.+. .+.+..+++.+...|...|++++|...|+++. ..+...+..+...+...|++++|.+.|+++.+ .+.
T Consensus 455 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 455 KKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred HHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH
Confidence 999874 46678899999999999999999999999874 34566788889999999999999999998864 456
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHH
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDML 379 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 379 (812)
.++..+...+.+.|+.++|..+|.++...+ ..+...+..+...+...|+++.+..++..+.+.. +.+..++..+...|
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 688899999999999999999999998764 3455667778888999999999999999987643 55678899999999
Q ss_pred HhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC-hhhHHHHHHHhcCccchHHH
Q 040319 380 TRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD-EIALTSVLGVCGTLGFHEMG 457 (812)
Q Consensus 380 ~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 457 (812)
.+.|++++|...|+.+... +++...|..+...|.+.|++++|+..|+++.. ..|+ ..++..+...+...|+++.|
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE---LKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999987522 34567789999999999999999999999986 4454 56788888999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040319 458 KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASI 535 (812)
Q Consensus 458 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 535 (812)
..++..+.+.. +.+...+..+...|.+.|++++|...|+.+.. |+..++..++..+...|++++|.+.++++.+.
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-- 765 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-- 765 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 99999998865 45777888899999999999999999998765 67788888999999999999999999999984
Q ss_pred CCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHH
Q 040319 536 KPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVW 612 (812)
Q Consensus 536 ~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~ 612 (812)
.|+ ...+..+...|.. .|+.++|.++|+.+.+. -++++..+..+..++...|+ ++|++.++++. ..| +..++
T Consensus 766 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 766 HPNDAVLRTALAELYLA--QKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred CCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence 454 4677777778888 99999999999999863 24467889999999999999 88999999864 455 56788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
..+...+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888899999999999999999999999999999999999999999999999999884
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=2.9e-38 Score=266.84 Aligned_cols=106 Identities=53% Similarity=0.919 Sum_probs=98.7
Q ss_pred ceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhhhHHHHH
Q 040319 679 SRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQK--------KDFLFYHSAKLAA 750 (812)
Q Consensus 679 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 750 (812)
||||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999977 9999999999998 455678889999999999999888776 5699999999999
Q ss_pred HHhhcCCCCCCcEEEEccc-ccccchhhHHHHhhhhcceEEEEecCCcccccc
Q 040319 751 TYGLLTTPAGQPVRIVKNI-LTCGDCHSFLKYVSVVTRREIFLRDASGFHHFL 802 (812)
Q Consensus 751 ~~~~~~~~~~~~~~~~~n~-~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~ 802 (812)
||||+++ ||+||+ |||+|||+++|+||+++||+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=3e-23 Score=251.91 Aligned_cols=626 Identities=13% Similarity=0.046 Sum_probs=386.3
Q ss_pred hccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCC--CChhhH-----------------HH
Q 040319 9 VQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS--PNVVSF-----------------TS 69 (812)
Q Consensus 9 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~-----------------~~ 69 (812)
...++.+.|++.+..++... +.++.+...++..+.+.|+.++|.+.+++..+ |+...+ -.
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred HhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 34455555555555554432 22344455555555555666555555555432 221111 11
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcC
Q 040319 70 LISGLAKLGREEEAIELFFRMRSEGIVPNEHS-FVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFS 148 (812)
Q Consensus 70 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 148 (812)
+...+...|++++|++.|+.+.+.. +|+... ...........++.++|...++.+.+.. +.++.....+-..+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 1223445555555555555555432 222111 0011111122355555555555555543 223344445555555555
Q ss_pred CCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCc-chHHHHHHHHhcCCChHHHHHHHHH
Q 040319 149 FCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDY-FTISTLLTACTGCFVLMEGRAVHAH 227 (812)
Q Consensus 149 ~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~ 227 (812)
+.++|.+.|+++....... ...+...+..+ ...+..|+. ..+...+..+-.......+...+..
T Consensus 196 -~~~eAl~~l~~~~~~~~~~-------------~~aa~~~~~~l-~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~ 260 (1157)
T PRK11447 196 -RRDEGFAVLEQMAKSPAGR-------------DAAAQLWYGQI-KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAE 260 (1157)
T ss_pred -CHHHHHHHHHHHhhCCCch-------------HHHHHHHHHHH-hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5555555555543211000 00000001111 111111111 1122223333333334455555555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCcchhHHHHHHHHHhhCChhHHHHHhccCCC--CCc---
Q 040319 228 AIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMP---VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE--KNS--- 299 (812)
Q Consensus 228 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~d~--- 299 (812)
..+....|+.. ...+...+...|++++|...|++.. ..+...+..+...|.+.|+.++|+..|++..+ |+.
T Consensus 261 ~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 261 QQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 44433233322 1233455667778888887777763 23556677777777778888888877776654 221
Q ss_pred ccHHHH------------HHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCC
Q 040319 300 VSYNAL------------LAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGS 367 (812)
Q Consensus 300 ~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 367 (812)
..|..+ ...+.+.|++++|+..|++.++... .+...+..+-..+...|+.+.|.+.+..+++... .
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~ 417 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-G 417 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 112222 2356678888888888888887532 2344555566677778888888888888877542 2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCc----------eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC
Q 040319 368 NDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDD----------SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD 437 (812)
Q Consensus 368 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 437 (812)
+...+..+...|. .++.++|...++.++...+. ...+..+...+...|++++|++.|++..+ ..|+
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~---~~P~ 493 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA---LDPG 493 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCC
Confidence 3455566666664 45788898888876522110 12344566778889999999999999987 5676
Q ss_pred hh-hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCC----Chh-------
Q 040319 438 EI-ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSH----DIV------- 505 (812)
Q Consensus 438 ~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----~~~------- 505 (812)
.. .+..+...+...|++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +..
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 44 45566778889999999999999988743 234555555666778899999999999988642 111
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHH
Q 040319 506 --SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYAS 582 (812)
Q Consensus 506 --~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 582 (812)
.+..+...+...|+.++|+++++. ..++...+..+...+.. .|++++|+..|+...+ ..|+ ...+..
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~--~g~~~~A~~~y~~al~---~~P~~~~a~~~ 642 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ--RGDYAAARAAYQRVLT---REPGNADARLG 642 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 123456678899999999999872 23344556666677777 9999999999999987 3454 788999
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc------hHHHHHhhhh
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA------TYILVSNLYS 654 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~ 654 (812)
++.+|...|++++|++.++..+ ..| +..++..+..++...|+.++|...++++++..|+++. .+..++.+|.
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999876 555 4667777888888999999999999999998876553 5666799999
Q ss_pred hCCCcchHHHHHHHHH
Q 040319 655 SSGRWHNSELVREDMR 670 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~ 670 (812)
+.|++++|.+.+++..
T Consensus 723 ~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 723 QTGQPQQALETYKDAM 738 (1157)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999987764
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2.5e-22 Score=243.97 Aligned_cols=602 Identities=11% Similarity=0.036 Sum_probs=432.9
Q ss_pred HHHHHHHccCChhhHHHHHhcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH------------
Q 040319 38 PLISAYLKLGHVADAYKIFYGLS---SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSF------------ 102 (812)
Q Consensus 38 ~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------------ 102 (812)
..++.+-..++.+.|.+.++++. ..|...+..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 34455677899999999998764 3456778888999999999999999999998864 443222
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHH-HHHHHhhhcCCCHHHHHHHHhcCCC--C-CcchHHHHH
Q 040319 103 -----VAILTACIRLLELELGFQIHALIVKMGCVDSVFVTN-ALMGLYGKFSFCLDYLLKLFDELPH--K-DTVSWNTVI 173 (812)
Q Consensus 103 -----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~~a~~~f~~~~~--~-~~~~~~~li 173 (812)
....+.+...|++++|.+.+..+.+.. +++..... .+.......| +.++|.+.++++.. | +...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g-~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPA-QRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCc-cHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 223346778899999999999988764 23322111 1122223457 89999999998774 3 556788888
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCC
Q 040319 174 SSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGA-NLSVNNALIGFYTKCGR 252 (812)
Q Consensus 174 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~ 252 (812)
..+...|++++|++.|+++ ... .+.. ...+...+..+...+..+ ....+...+..+-....
T Consensus 189 ~ll~~~g~~~eAl~~l~~~-~~~--~~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQM-AKS--PAGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred HHHHccCCHHHHHHHHHHH-hhC--CCch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 8999999999999999988 332 1110 011111122222222111 12233333444444444
Q ss_pred hHHHHHHHhcCCC--Ccch-hHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 040319 253 VKDVVALLERMPV--MDII-TLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKLL 326 (812)
Q Consensus 253 ~~~A~~l~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 326 (812)
.+.|...+..... .|.. ........+...|++++|+..|++..+ .|...+..+...|.+.|++++|+..|++..
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666655421 1221 122345677889999999999998765 356788899999999999999999999998
Q ss_pred HcCCCCCH-hHHH------------HHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 040319 327 EEGLVLTE-FTLT------------SVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFY 393 (812)
Q Consensus 327 ~~g~~p~~-~t~~------------~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 393 (812)
+....... ..+. ..-..+...|++++|...+..+++... .+...+..|...|...|++++|++.|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 76432211 1111 112345678999999999999998743 456677789999999999999999999
Q ss_pred cCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC--------ChhhHHHHHHHhcCccchHHHHHHHHHH
Q 040319 394 RWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP--------DEIALTSVLGVCGTLGFHEMGKQIHSYA 464 (812)
Q Consensus 394 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 464 (812)
+.... +++...+..+...|. .++.++|+..++.+.. ....+ ....+..+...+...|++++|...++.+
T Consensus 410 ~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~-~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 410 QALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSA-SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCH-HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 87633 334556666766664 4678999999877654 11000 0112334456677889999999999999
Q ss_pred HHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 465 LKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 465 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
++.. +.+..++..+...|.+.|++++|...|+++.+ | +...+..+...+...|+.++|+..++++......++...
T Consensus 488 l~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~ 566 (1157)
T PRK11447 488 LALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQE 566 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHH
Confidence 9864 33567788899999999999999999998754 3 455666666667889999999999988654333333211
Q ss_pred ---------HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHH
Q 040319 542 ---------FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVS 610 (812)
Q Consensus 542 ---------~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~ 610 (812)
+..+...+.. .|+.++|.++++. .+++...+..+.+.+.+.|++++|++.+++.. ..| +..
T Consensus 567 l~~~l~~~~~l~~a~~l~~--~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 567 LAQRLQSDQVLETANRLRD--SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHH--CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 2334456667 8999999999872 23456778889999999999999999999865 566 578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
.+..+...+...|+.++|+..++++++..|+++..+..++.+|...|++++|.++++++....
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999999999999999999999999986543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=3.3e-20 Score=214.74 Aligned_cols=592 Identities=13% Similarity=0.024 Sum_probs=411.0
Q ss_pred ccCChhhHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 040319 45 KLGHVADAYKIFYGLSS---PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQI 121 (812)
Q Consensus 45 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 121 (812)
..|++++|...|+...+ .+...+..|...|...|++++|+..+++..+. .|+...|..++..+ ++.++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 44999999999987652 34567888999999999999999999998875 45555555544333 888899999
Q ss_pred HHHHHHhCCCCchHHHHHHHHH--------hhhcCCCHHHHHHHHhcCCCCC--cchHH-HHHHHHHcCCChhHHHHHHH
Q 040319 122 HALIVKMGCVDSVFVTNALMGL--------YGKFSFCLDYLLKLFDELPHKD--TVSWN-TVISSVVNEFEYEKAFELFR 190 (812)
Q Consensus 122 ~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~~a~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~l~~ 190 (812)
++.+.+... .+..++..+... |.+.+ ....+.+ .+...|+ ..... .+...|.+.|++++|++++.
T Consensus 131 ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~e-qAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLP-VARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHH-HHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999988753 233344444443 77766 6666666 3333333 33334 44889999999999999999
Q ss_pred HhHhcCCCCCCcch-HHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 040319 191 DMKRDNGFTVDYFT-ISTLLTACTG-CFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPV--- 265 (812)
Q Consensus 191 ~m~~~~g~~pd~~t-~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--- 265 (812)
++ .+.+ |.... ...+-.++.. .++ +.+..++.. .+..+..+...+.+.|.+.|+.++|.+++++++.
T Consensus 207 ~L-~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 207 EA-RQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HH-HhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 99 5543 33333 4445556655 355 666666442 3447889999999999999999999999998852
Q ss_pred --CcchhH------------------------------HHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHH--HHHh
Q 040319 266 --MDIITL------------------------------TEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLA--GYCK 311 (812)
Q Consensus 266 --~~~~~~------------------------------~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~--~~~~ 311 (812)
++..+| -.++..+.+.++++.|.++.. ....+. . ..+. +...
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~ 354 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVA 354 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccc
Confidence 211111 112556677778887777644 222222 1 2222 2223
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHh-c-CCCchhHHHHHHHHHHhcCC---HH
Q 040319 312 NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKF-G-LGSNDCIEAALLDMLTRCGR---MA 386 (812)
Q Consensus 312 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~---~~ 386 (812)
.+...++...++.|.+.... +....--+---....|+.++|.+++...... + -..+....+-|+..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 36667777777777665211 1111111112234567888899888887662 1 22356667788888888876 23
Q ss_pred HHHHH-------------------------HhcCCCC-CC--ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh
Q 040319 387 DAEKM-------------------------FYRWPTD-RD--DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE 438 (812)
Q Consensus 387 ~A~~~-------------------------f~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 438 (812)
.+..+ +...... ++ +...|..+...+.. +++++|+..|.+... ..|+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~ 509 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDA 509 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCch
Confidence 33222 1111111 22 35566777777766 788889998887776 45776
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHH---HHHHH
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGL---IAGHL 515 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~ 515 (812)
.....+..++...|+++.|...+..+... +|+...+..+...+.+.|+.++|...|+...+.++..++.. ...+.
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 55444455556889999999998887653 34444556677888899999999999987765333223332 23333
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChH
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~ 594 (812)
..|++++|+..|++.++ ..|+...+..+..++.. .|+.++|...|+...+ +.|+ ...+..+..++...|+++
T Consensus 588 ~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~--lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 588 IPGQPELALNDLTRSLN--IAPSANAYVARATIYRQ--RHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred hCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHH
Confidence 45999999999999998 77887788888888888 9999999999998876 4565 678888888999999999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 595 EAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 595 ~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|++.+++.. ..| +...+..+..++...|+++.|+..++++++++|+++......++++.+..+++.|.+-+++.-.
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998854 566 5778889999999999999999999999999999999999999999999999998887766533
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=4.8e-19 Score=205.19 Aligned_cols=576 Identities=10% Similarity=-0.030 Sum_probs=402.4
Q ss_pred hHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 040319 66 SFTSLISGLA--KLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGL 143 (812)
Q Consensus 66 ~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 143 (812)
++..+..+.. ..|++++|+..|++..+.. +-+..++..+.+.+...|+.++|....+..++... .|...+..| ..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HH
Confidence 3444555443 3499999999999998864 23467788899999999999999999999988742 344444444 33
Q ss_pred hhhcCCCHHHHHHHHhcCCC--C-CcchHHHHHHH--------HHcCCChhHHHHHHHHhHhcCCCCCCcchHHHH-HHH
Q 040319 144 YGKFSFCLDYLLKLFDELPH--K-DTVSWNTVISS--------VVNEFEYEKAFELFRDMKRDNGFTVDYFTISTL-LTA 211 (812)
Q Consensus 144 y~~~g~~~~~a~~~f~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l-l~~ 211 (812)
+ + ..+.|..+++++.. | +...+..+... |.+.+...++++ . +.....|+..+.... .+.
T Consensus 121 i---~-~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----l-r~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 121 I---P-VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----D-ATFAASPEGKTLRTDLLQR 191 (987)
T ss_pred h---c-cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----H-hhhCCCCCcHHHHHHHHHH
Confidence 3 6 77888888888763 3 34444444444 666655555555 3 443445556555555 889
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHH
Q 040319 212 CTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTK-CGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEI 290 (812)
Q Consensus 212 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (812)
+...++++.+..++..+.+.+ +.+..-...|-.+|.. .++ +.+..+++.....+...+..++..|.+.|+.++|.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999987 4445556777778888 477 8888887765567888999999999999999999999
Q ss_pred hccCCC-----CCcccHHH------------------------------HHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 040319 291 FDKMPE-----KNSVSYNA------------------------------LLAGYCKNGKAMEALGLFVKLLEEGLVLTEF 335 (812)
Q Consensus 291 f~~m~~-----~d~~~~~~------------------------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 335 (812)
+.+++. |+..+|-- ++..+.+.++++-+.++ ....|...
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 343 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANE 343 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcch
Confidence 999864 22222222 23444455555533333 12344444
Q ss_pred HHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce----eeeHHHHHH
Q 040319 336 TLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS----IIWTSMICG 411 (812)
Q Consensus 336 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~ 411 (812)
....-..+....+...++.+.+..+.+... -+....--+.-...+.|+.++|.++|+..-..+.+. ..-+-++..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 321111222233555566666666655421 133333334444578899999999998876323222 233456677
Q ss_pred HHHcCC---hhhHHHH----------------------HHHhcccCCCCCC---hhhHHHHHHHhcCccchHHHHHHHHH
Q 040319 412 YARSGK---PEHAILL----------------------FHQSQSEATVVPD---EIALTSVLGVCGTLGFHEMGKQIHSY 463 (812)
Q Consensus 412 ~~~~g~---~~~A~~~----------------------~~~m~~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~ 463 (812)
|...+. ..+++.+ ......-.+..|+ ...+..+-.++.. +..++|...+..
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 777665 3333333 1111111122233 3334444444444 788888887777
Q ss_pred HHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 464 ALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 464 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
..... |+......+...+...|++++|...|+++.. |+...+..+...+.+.|+.++|...|++.++ ..|+...
T Consensus 502 Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~--l~P~~~~ 577 (987)
T PRK09782 502 AEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ--RGLGDNA 577 (987)
T ss_pred HHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCccHH
Confidence 66543 5544444455556789999999999987664 5556777888889999999999999999998 4566543
Q ss_pred H-HHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 040319 542 F-VLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDS 618 (812)
Q Consensus 542 ~-~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 618 (812)
. ..+...... .|++++|...|++..+ +.|+...|..+..++.+.|+.++|+..+++.. ..| +...+..+..+
T Consensus 578 l~~~La~~l~~--~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 578 LYWWLHAQRYI--PGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3 333334445 6999999999999986 56888899999999999999999999999965 677 46677888888
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 619 CRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 619 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+...|+.++|+..++++++++|+++..+..++.+|...|++++|...+++.-+.
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999988543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=4.5e-19 Score=181.27 Aligned_cols=452 Identities=13% Similarity=0.067 Sum_probs=307.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCc-chHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 040319 169 WNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDY-FTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFY 247 (812)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 247 (812)
-..|..-..+.|++++|++--... -.. .|+. .+...+-..+.+..+.+...+--...++.. +.-..+|..+.+.+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv-~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMV-GQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHh-hcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 344556667788888888765544 221 1221 122222222333334443333222222221 23345566666666
Q ss_pred HhcCChHHHHHHHhcCCC---CcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHH
Q 040319 248 TKCGRVKDVVALLERMPV---MDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVK 324 (812)
Q Consensus 248 ~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 324 (812)
-..|++++|.++++.+.+ ..+..|..+..++...|+.+.|. ..|.+
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~-------------------------------~~~~~ 175 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAV-------------------------------QCFFE 175 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccH-------------------------------HHHHH
Confidence 666666666665555432 13344444444454555544444 44444
Q ss_pred HHHcCCCCCHhHHHHHHHHh-ccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-ce
Q 040319 325 LLEEGLVLTEFTLTSVVNAC-GLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-DS 402 (812)
Q Consensus 325 m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~~ 402 (812)
.++ +.|+.+...+-+.-+ ...|.++++...+-.+++... .=..+|+.|...+-..|++..|...|++...-.| -.
T Consensus 176 alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~ 252 (966)
T KOG4626|consen 176 ALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL 252 (966)
T ss_pred HHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch
Confidence 443 233333222222111 112334444444433333211 1124456666677778888888888877653333 24
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
..|-.|-..|...+.+++|+..|.+... ..|+.. .+..+...|-..|.++.|..-+++.+... +.-...|+.|..
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLAN 328 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHH
Confidence 4677777888888888888888877765 666643 45555566777888888888888887643 223567889999
Q ss_pred HhhhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS--H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLV 557 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~ 557 (812)
++...|++.+|.+.+++... | -..+.+.|...|...|..++|..+|+...+ +.|.- ..++.|...|-+ .|++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kq--qgnl 404 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQ--QGNL 404 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHh--cccH
Confidence 99999999999999988765 3 356888999999999999999999999999 88987 678889889988 9999
Q ss_pred HHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040319 558 DSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKH 634 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 634 (812)
++|+..+++..+ |.|+ .+.|+.|...|-..|+.+.|.+.+.+.. +.|. +-..+.|...++..|++.+|+..++.
T Consensus 405 ~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 405 DDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 999999999876 8898 7899999999999999999999998854 7775 56888999999999999999999999
Q ss_pred HHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 635 ILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 635 ~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+++++|+-+.+|-.+...+.-..+|.+-.+.++++
T Consensus 482 aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 482 ALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999888888888844444333
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=4.9e-18 Score=173.78 Aligned_cols=416 Identities=13% Similarity=0.132 Sum_probs=328.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCcc---hhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCC
Q 040319 241 NALIGFYTKCGRVKDVVALLERMPVMDI---ITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGK 314 (812)
Q Consensus 241 ~~li~~~~~~g~~~~A~~l~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~ 314 (812)
..|..-..+.|++++|++.-..+-..|. ...-.+-.++.+..+.+....--....+ .-..+|..+...+-..|+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 3455556677888888776555533222 1222222344444444444332222222 234578889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhH-HHHHHHHHHhcCCHHHHHHHH
Q 040319 315 AMEALGLFVKLLEEGLVLT-EFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCI-EAALLDMLTRCGRMADAEKMF 392 (812)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~f 392 (812)
.++|+.+|+.|++. +|+ ...|..+-.++...|+.+.+.+.+...++.. |+... .+-+-......|++++|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999985 453 4578888888899999999999998887753 44333 233455566789999998888
Q ss_pred hcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHhcCccchHHHHHHHHHHHHhCCC
Q 040319 393 YRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVCGTLGFHEMGKQIHSYALKTGFS 470 (812)
Q Consensus 393 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 470 (812)
.+.... +.-.+.|+.|...+-..|+...|++.|++... +.|+-. .|..+-..+...+.++.|...+.++.... +
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 664423 34478899999999999999999999999987 777643 56666667777777777777777666532 2
Q ss_pred CchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD-IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLII 546 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll 546 (812)
....++..|...|-..|.++-|...+++..+ |+ ...||.|..++...|+..+|...|.+.+. +.|+. .+.+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence 3566777888899999999999999998876 44 57999999999999999999999999999 88887 6788899
Q ss_pred HHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcC
Q 040319 547 SAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRL 623 (812)
Q Consensus 547 ~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~ 623 (812)
..+.. .|.+++|..+|....+ +.|. ....+.|...|-..|++++|+.-+++.. ++|+ +..++.+.+.+...|
T Consensus 362 ni~~E--~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 362 NIYRE--QGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHH--hccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999 9999999999998876 5676 6788999999999999999999999865 8896 568999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 624 NTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 624 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
++..|.+.+.+++.++|.-+.++..|+.+|-.+|+..+|+.-++....
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998887744
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.5e-15 Score=162.64 Aligned_cols=577 Identities=13% Similarity=0.077 Sum_probs=320.6
Q ss_pred hhhHHHHHhcCCC--C-ChhhHHHHHHH--HHhcCChhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChHHHHHH
Q 040319 49 VADAYKIFYGLSS--P-NVVSFTSLISG--LAKLGREEEAIELFFRMRSEG--IVPNEHSFVAILTACIRLLELELGFQI 121 (812)
Q Consensus 49 ~~~A~~~f~~~~~--~-~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 121 (812)
.+.|...|....+ | |+-. .|..+ ....+++..|+.+|...+... .+||+. ..+-.++.+.++.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 4778777776642 3 3322 22333 335678889999998866543 344443 2334667788888888877
Q ss_pred HHHHHHhCCCCchHHHHHHHHHhh---hcC--CCHHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHHHHHHHHhH
Q 040319 122 HALIVKMGCVDSVFVTNALMGLYG---KFS--FCLDYLLKLFDELP---HKDTVSWNTVISSVVNEFEYEKAFELFRDMK 193 (812)
Q Consensus 122 ~~~~~~~g~~~~~~~~~~li~~y~---~~g--~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 193 (812)
+....+.. | ...++++..+. ... ..+..+..++...- ..|++..|.|...|.-.|+++.++.+...+.
T Consensus 222 ~~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 222 FERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 77776543 3 33333333221 111 12333444443322 3577888888888888888888888888873
Q ss_pred hcCCCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCcch
Q 040319 194 RDNGFTV-DYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMP---VMDII 269 (812)
Q Consensus 194 ~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~ 269 (812)
...-..+ -...|-.+-+++-..|+++.|...+-+..+..-..-+..+-.|..+|.+.|+++.+...|+.+. +.+..
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 3221111 1234667777788888888888888777665322223334456788888888888888887764 22345
Q ss_pred hHHHHHHHHHhhC----ChhHHHHHhccCCCCC---cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 040319 270 TLTEIIIAYMEFG----YVDLAVEIFDKMPEKN---SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVN 342 (812)
Q Consensus 270 ~~~~li~~~~~~g----~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (812)
+...+...|...+ ..+.|..+..+..++. ...|-.+...+-+. +...++..|.....
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d--------------- 441 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALD--------------- 441 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHH---------------
Confidence 5555555555553 4566666666555433 23344333333333 22222444433321
Q ss_pred HhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----CCcee------eeHHHHHH
Q 040319 343 ACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-----RDDSI------IWTSMICG 411 (812)
Q Consensus 343 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~------~~~~li~~ 411 (812)
.+...+-.+.+.+.|.+...+...|++++|...|++.... .+|.. +-..+...
T Consensus 442 ----------------~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 442 ----------------ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred ----------------HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 2223333455555666666666666666666666554311 01110 11123334
Q ss_pred HHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHh-cCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHH
Q 040319 412 YARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVC-GTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMS 490 (812)
Q Consensus 412 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 490 (812)
+-..++++.|.+.|..+.. ..|.-++--.-+.+. ...+.+.++...+..+.+.. ..++.+++.+.+.|.+...+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilk---ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILK---EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHH---HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhc
Confidence 4445566666666666665 345444322222111 22244555555555555422 234445555555666666666
Q ss_pred HHHHHHccCCC-----CChhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCC
Q 040319 491 NAIKAFNKMPS-----HDIVSWNGLIAGHLL------------HRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYT 552 (812)
Q Consensus 491 ~A~~~f~~~~~-----~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~ 552 (812)
.|..-|..+.+ +|..+.-+|.+.|.+ .+..++|+++|.+.++ ..|-. ..-+.+...+++
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~- 658 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAE- 658 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhh-
Confidence 66654333322 344444444443332 2344566666666666 44433 444445545555
Q ss_pred CCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC---C-CCCHHHHHHHHHHHHhcCCHHHH
Q 040319 553 NLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP---F-QPKVSVWRALLDSCRIRLNTTIG 628 (812)
Q Consensus 553 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~---~-~p~~~~~~~ll~~~~~~~~~~~a 628 (812)
.|.+.+|..+|.+..+.. .....+|-.+..+|...|++..|+++|+... . +.+.-+...|..++...|.+.+|
T Consensus 659 -kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 659 -KGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred -ccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 667777777777666522 2334566666677777777777777766532 1 23455666666666667777777
Q ss_pred HHHHHHHHccCCCCCchHHHHHh-------------------hhhhCCCcchHHHHHHHHHhCCCC
Q 040319 629 KRVAKHILAMEPQDPATYILVSN-------------------LYSSSGRWHNSELVREDMREKGFR 675 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~~~~l~~-------------------~y~~~g~~~~a~~~~~~m~~~g~~ 675 (812)
...+..++.+.|.|+..-+.++- +....+..++|.++|..|...+-+
T Consensus 736 k~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 736 KEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777777777776665554443 344455678888888888765544
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=3.4e-16 Score=178.81 Aligned_cols=413 Identities=13% Similarity=-0.001 Sum_probs=260.6
Q ss_pred HHHHHhcCChHHHHHHHhcCC--CCcchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHH
Q 040319 244 IGFYTKCGRVKDVVALLERMP--VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEA 318 (812)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A 318 (812)
...|.+.|+++.|...|++.. .|+...|..+..+|.+.|++++|++.+++..+ .+...|..+..+|...|++++|
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555542 33444455555555555555555556655443 2344666677777777787777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 040319 319 LGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD 398 (812)
Q Consensus 319 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 398 (812)
+.-|......+-..+ .....++..... ..+........+.. +.+......+ ..|........+..-++.....
T Consensus 214 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 214 LLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhccccc
Confidence 777765544321111 111111111111 11111111111111 1111111111 1222221111111112111101
Q ss_pred CC-ceeeeHHHHHHH---HHcCChhhHHHHHHHhcccCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCch
Q 040319 399 RD-DSIIWTSMICGY---ARSGKPEHAILLFHQSQSEATVVPDE-IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDL 473 (812)
Q Consensus 399 ~~-~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 473 (812)
.+ ....+..+...+ ...+++++|++.|++........|+. ..+..+...+...|+++.|...+..+++.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 11 011111111111 22467889999999888622234543 345555566778899999999999888753 2245
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHh
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAY 549 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~ 549 (812)
..+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHH
Confidence 6778888999999999999999987654 4578899999999999999999999999998 67875 4555566677
Q ss_pred cCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-H-------HHHHHHHHH
Q 040319 550 RYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKV-S-------VWRALLDSC 619 (812)
Q Consensus 550 ~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~-~-------~~~~ll~~~ 619 (812)
.. .|++++|...|+...+ ..|+ ...|..+..++...|++++|++.+++.. +.|+. . .++..+..+
T Consensus 444 ~~--~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 444 YK--EGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HH--CCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 77 8999999999999876 2354 7889999999999999999999998844 44431 1 122222234
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...|++++|+..++++++++|++...+..++.+|...|++++|.+.+++..+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999988754
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=1.4e-17 Score=180.68 Aligned_cols=292 Identities=14% Similarity=0.120 Sum_probs=219.6
Q ss_pred HHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC---hhhHHHHHHHhcCccc
Q 040319 378 MLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD---EIALTSVLGVCGTLGF 453 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~t~~~ll~a~~~~~~ 453 (812)
.+...|++++|...|+++... +++..+|..+...+...|++++|+.+++.+.. .+..++ ...+..+...+...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345667777777777776533 23344677777777778888888888777765 322221 1345566677777788
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC------hhHHHHHHHHHHhcCChHHHHH
Q 040319 454 HEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD------IVSWNGLIAGHLLHRQGDEALA 525 (812)
Q Consensus 454 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~ 525 (812)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+ |+ ...|..+...+...|++++|++
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888877777642 34567788888888888888888888887754 22 1245667778888999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC--cchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 526 VWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--SEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 526 l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
.|+++.+ ..|+. ..+..+...+.. .|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.+++
T Consensus 202 ~~~~al~--~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 202 LLKKALA--ADPQCVRASILLGDLALA--QGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHh--HCcCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988 45664 456666677777 89999999999998762 343 45678899999999999999999998
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh---CCCcchHHHHHHHHHhCCCCCCC
Q 040319 603 MP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS---SGRWHNSELVREDMREKGFRKHP 678 (812)
Q Consensus 603 m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~g~~~~~ 678 (812)
+. ..|+...+..+...+...|+.+.|...++++++..|+++. +..+...+.. .|+.+++..++++|.++++++.|
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 65 6777777788888899999999999999999999998764 4444444432 56999999999999999998888
Q ss_pred c
Q 040319 679 S 679 (812)
Q Consensus 679 ~ 679 (812)
+
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 7
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=2.3e-17 Score=178.86 Aligned_cols=298 Identities=13% Similarity=0.056 Sum_probs=185.2
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCCc-chHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHH
Q 040319 173 ISSVVNEFEYEKAFELFRDMKRDNGFTVDY-FTISTLLTACTGCFVLMEGRAVHAHAIRIGLGAN---LSVNNALIGFYT 248 (812)
Q Consensus 173 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~ 248 (812)
...+...|++++|+..|+++ ... .|+. .++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.
T Consensus 42 g~~~~~~~~~~~A~~~~~~a-l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEM-LKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHhcCChHHHHHHHHHH-Hhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33455667777777777777 332 3332 3455555556666666666666666555322111 123444444444
Q ss_pred hcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 040319 249 KCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKL 325 (812)
Q Consensus 249 ~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m 325 (812)
+.|++++|.. +|+++.+ .+..+++.++..+.+.|++++|.+.|+.+
T Consensus 119 ~~g~~~~A~~-------------------------------~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 119 KAGLLDRAEE-------------------------------LFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HCCCHHHHHH-------------------------------HHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 4455544444 5555543 34556777777788888888888888877
Q ss_pred HHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceee
Q 040319 326 LEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSII 404 (812)
Q Consensus 326 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~ 404 (812)
.+.+..++.... ...+..+...|.+.|++++|.+.|+++... +++...
T Consensus 168 ~~~~~~~~~~~~-------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 216 (389)
T PRK11788 168 EKLGGDSLRVEI-------------------------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRA 216 (389)
T ss_pred HHhcCCcchHHH-------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence 765432221100 112334566677788888888888776522 233556
Q ss_pred eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC--hhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 405 WTSMICGYARSGKPEHAILLFHQSQSEATVVPD--EIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482 (812)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 482 (812)
+..+...|.+.|++++|++.|+++.. . .|+ ..++..+..++...|+++.|...+..+.+.. |+...+..++..
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~-~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~ 291 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEE-Q--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQL 291 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-H--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 77777888888888888888888876 2 333 2345566666777777777777777666643 444455677777
Q ss_pred hhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHH
Q 040319 483 YFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLL---HRQGDEALAVWSSMEKASIKPDAI 540 (812)
Q Consensus 483 y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 540 (812)
|.+.|++++|..+|+++.+ |+..+++.++..+.. +|+..+++.+|++|.+.++.|+..
T Consensus 292 ~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 292 LEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777777777777776544 777777777766554 457777777777777766666654
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=1.5e-15 Score=172.67 Aligned_cols=328 Identities=11% Similarity=-0.007 Sum_probs=228.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcC
Q 040319 304 ALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCG 383 (812)
Q Consensus 304 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 383 (812)
.++..+.+.|++++|+.+++..+.....+....+... .+....|+++.|.+.+..+.+.. +.+...+..+...|.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~-~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWV-ISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHh-hhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3444455555555555555555554333322222222 23333555555555555555432 223445566677788888
Q ss_pred CHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHH
Q 040319 384 RMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHS 462 (812)
Q Consensus 384 ~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 462 (812)
++++|...|++.... +++...|..+...+...|++++|...++.+.. ..|+.......+..+...|++++|...+.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~---~~P~~~~a~~~~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ---EVPPRGDMIATCLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876532 34466778888888888888888888887765 33443332222334667788888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHH----HHHHHHHHHHCCC
Q 040319 463 YALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDE----ALAVWSSMEKASI 535 (812)
Q Consensus 463 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~ 535 (812)
.+.+....++......+...+.+.|++++|...|++... .+...+..+...|...|++++ |+..|++..+ +
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--F 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--h
Confidence 877654333444555567788889999999999887664 456778888899999999885 8999999988 6
Q ss_pred CCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 040319 536 KPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVW 612 (812)
Q Consensus 536 ~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~ 612 (812)
.|+. ..+..+...+.. .|++++|...++...+ ..|+ ...+..+..+|.+.|++++|++.++++. ..|+...+
T Consensus 280 ~P~~~~a~~~lg~~l~~--~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 280 NSDNVRIVTLYADALIR--TGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred CCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 7776 566677777777 8999999999998876 3455 5667788899999999999999998866 66765444
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 613 R-ALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 613 ~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
. .+..++...|+.+.|...++++++..|++.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 3 345668889999999999999999998854
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=7.9e-16 Score=178.95 Aligned_cols=185 Identities=10% Similarity=0.052 Sum_probs=124.0
Q ss_pred hhcCCHHHHHHHHccCCCCC---hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcCCCC
Q 040319 484 FKCCNMSNAIKAFNKMPSHD---IV-SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-----ITFVLIISAYRYTNL 554 (812)
Q Consensus 484 ~k~g~~~~A~~~f~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~ 554 (812)
...|++++|...|+.+...+ +. .--.+...|...|++++|+..|+++.+. .|.. .....+..++.. .
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~--~ 323 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLE--S 323 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHh--c
Confidence 34466666666666665421 11 1111345666677777777777766552 2321 223344445555 6
Q ss_pred chHHHHHHHHHHhhhhcC----------ccCC---cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 040319 555 NLVDSCRKLFLSMKTIYN----------IEPT---SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSC 619 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~ 619 (812)
|++++|.++++.+.+... -.|+ ...+..++.++...|++++|++.++++. ..| +...+..+...+
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777766654210 0122 2244567778888888899888888865 445 567888888888
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
...|+.+.|+..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88899999999999999999998888888888888999999999888887654
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.5e-13 Score=149.19 Aligned_cols=479 Identities=13% Similarity=0.049 Sum_probs=318.1
Q ss_pred hhHHHHHHHHhHhcCCCCCCcchHHHHHHHH--hcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHH
Q 040319 182 YEKAFELFRDMKRDNGFTVDYFTISTLLTAC--TGCFVLMEGRAVHAHAIRIG--LGANLSVNNALIGFYTKCGRVKDVV 257 (812)
Q Consensus 182 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~ 257 (812)
.+.|...|....+. .|+.. ...+.+|| -..+++..+..+|..++... ..||+.+.. -..+.++|+.+.|.
T Consensus 146 ~~~A~a~F~~Vl~~---sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ---SPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhh---CCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHH
Confidence 35666666655222 22221 12233333 34556666777776655543 344444332 24556777777777
Q ss_pred HHHhcCCCCcchhHHHHHHHH------HhhCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040319 258 ALLERMPVMDIITLTEIIIAY------MEFGYVDLAVEIFDKMP---EKNSVSYNALLAGYCKNGKAMEALGLFVKLLEE 328 (812)
Q Consensus 258 ~l~~~~~~~~~~~~~~li~~~------~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 328 (812)
..|.+..+.|+..-++++... -....+..+..++...- ..|++..+.|...|.-.|+++.+..+...+...
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 777776655553333332211 11233445555555443 257778888888888888888888888877764
Q ss_pred CCC--CCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeee
Q 040319 329 GLV--LTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIW 405 (812)
Q Consensus 329 g~~--p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~ 405 (812)
... .-...|-.+-.++-..|+++.|...+-...+..-..-+..+-.|..+|.+.|+++.+...|+.+... +++..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 1223466677777888888888888877766543333444556889999999999999999887633 4445666
Q ss_pred HHHHHHHHHcC----ChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHH----HHHhCCCCchhHHH
Q 040319 406 TSMICGYARSG----KPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSY----ALKTGFSSDLGVAN 477 (812)
Q Consensus 406 ~~li~~~~~~g----~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~ 477 (812)
..+...|+..+ ..+.|..++.+... . ...|...|..+-..+.. ++......++.. +...+-.+.+.+.|
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~-~-~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLE-Q-TPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHh-c-ccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 66666777664 45667777766665 1 12233345444444433 333333444443 33456668889999
Q ss_pred HHHHHhhhcCCHHHHHHHHccCCC-------CCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040319 478 SMVSMYFKCCNMSNAIKAFNKMPS-------HDI------VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVL 544 (812)
Q Consensus 478 ~Li~~y~k~g~~~~A~~~f~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 544 (812)
.+...+...|+++.|...|..... +|. .+-..+...+-..++++.|.+.|...++ ..|+-++-..
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHH
Confidence 999999999999999999976543 333 2233355666677899999999999999 7898866443
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHH----hCCCCCCHHHHHHHHHHHH
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETIN----NMPFQPKVSVWRALLDSCR 620 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~----~m~~~p~~~~~~~ll~~~~ 620 (812)
=+.+..+ ..+...+|...++.... ....++..++-+.+.+.....+.-|.+-|+ +....+|+.+.-+|.+.|.
T Consensus 535 Rl~~ma~-~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 535 RLGCMAR-DKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HhhHHHH-hccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 3332222 15788899999988875 345567788888888888888777777443 3335578888888888764
Q ss_pred h------------cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 621 I------------RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 621 ~------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
. .+..++|.+.+.+++..+|.|.-+-+-++-+++..|+|.+|..+|.+.++...
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 2 23468889999999999999999999999999999999999999999988755
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.74 E-value=1.8e-14 Score=164.72 Aligned_cols=444 Identities=12% Similarity=0.025 Sum_probs=269.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 040319 168 SWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFY 247 (812)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 247 (812)
.+......+.+.|++++|+..|++.+ .+.|+...|..+..++...|+++.|.+.+..+++.. +.+...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al---~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAI---ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34456677888899999999998873 246777788888888888899999998888888754 34566777788888
Q ss_pred HhcCChHHHHHHHhcCCCC---cchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHH
Q 040319 248 TKCGRVKDVVALLERMPVM---DIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVK 324 (812)
Q Consensus 248 ~~~g~~~~A~~l~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 324 (812)
...|++++|..-|...... +......++..+.......++...++.-+ ++..++..+.. |........+..-+.+
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 8888888888766544211 11111111211111112233333333222 22333333222 2211111111111111
Q ss_pred HHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHH-HHhcCCHHHHHHHHhcCCCC----C
Q 040319 325 LLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDM-LTRCGRMADAEKMFYRWPTD----R 399 (812)
Q Consensus 325 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~-y~~~g~~~~A~~~f~~~~~~----~ 399 (812)
-.+ ..|+.. ...+ ...+... ....+++++|.+.|+..... +
T Consensus 283 ~~~--~~~~~~--~~~~------------------------------~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~ 328 (615)
T TIGR00990 283 SNE--LDEETG--NGQL------------------------------QLGLKSPESKADESYEEAARAFEKALDLGKLGE 328 (615)
T ss_pred ccc--cccccc--cchH------------------------------HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh
Confidence 000 000000 0000 0000000 01234555666666554311 1
Q ss_pred CceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHH
Q 040319 400 DDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478 (812)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 478 (812)
.+...|+.+...+...|++++|+..|++... ..|+.. .|..+...+...|+++.|...+..+++.. +.+..++..
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 404 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH 404 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 1234455566666666777777777666655 345432 45555555666667777777776666543 335667778
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCC
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNL 554 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 554 (812)
+...|...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ ..|+. ..+..+..++.. .
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~--~ 480 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLD--Q 480 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH--c
Confidence 88888889999999998887754 3466777888888899999999999999887 56764 566677777777 8
Q ss_pred chHHHHHHHHHHhhhhcCccCCc-c-------hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 040319 555 NLVDSCRKLFLSMKTIYNIEPTS-E-------HYASLVSVLGYWGFLEEAEETINNM-PFQPK-VSVWRALLDSCRIRLN 624 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p~~-~-------~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~ 624 (812)
|++++|.+.|+...+ +.|+. . .++.....+...|++++|.+++++. ...|+ ...+..+...+...|+
T Consensus 481 g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 481 NKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557 (615)
T ss_pred cCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC
Confidence 999999999988765 33431 1 1122223344569999999999884 36664 4578888889999999
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 625 TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+++|...+++++++.+.....+ ....|.+|.++....+
T Consensus 558 ~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 558 VDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHH
Confidence 9999999999999987643322 2234555666655443
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2e-13 Score=134.56 Aligned_cols=444 Identities=12% Similarity=0.076 Sum_probs=271.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--ChHHH-HHHHHHHHHhCCCCchHHHHHHH
Q 040319 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLL--ELELG-FQIHALIVKMGCVDSVFVTNALM 141 (812)
Q Consensus 65 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~g~~~~~~~~~~li 141 (812)
++-|.|+. ....|...++.-+|+.|+..|+..++..-..+++..+-.+ ++.-+ ++-|-.|.+.|-.. ..+
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~s----- 189 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSS----- 189 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-ccc-----
Confidence 34555554 4567899999999999999999988887777776554333 22222 23344444444322 222
Q ss_pred HHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHH
Q 040319 142 GLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEG 221 (812)
Q Consensus 142 ~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a 221 (812)
-|.| ++ |.-+|+.. .....+|..||.++++-...+.|.++|++- +....+.+..+|+.+|.+-+ +..+
T Consensus 190 ---WK~G-~v--AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S----~~~~ 257 (625)
T KOG4422|consen 190 ---WKSG-AV--ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASS----YSVG 257 (625)
T ss_pred ---cccc-cH--HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHH----hhcc
Confidence 2344 44 44455544 456779999999999999999999999999 78888999999999998854 3445
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCccc
Q 040319 222 RAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVS 301 (812)
Q Consensus 222 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~ 301 (812)
+.+..+|+...+.||..++|+++.+.++.|+++.|.+
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~------------------------------------------- 294 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK------------------------------------------- 294 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH-------------------------------------------
Confidence 8999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhH-HHHHhhHHH----hcCC----CchhHH
Q 040319 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLS-EQIHGFVMK----FGLG----SNDCIE 372 (812)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a-~~i~~~~~~----~g~~----~~~~~~ 372 (812)
.|++++.+|++-|+.|...+|..+|..+.+.++..+. ..+..++.. ..+. .|...+
T Consensus 295 ---------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 295 ---------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred ---------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 2344445555555555555555555544444443221 111111111 1111 122333
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC------CCc---eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHH
Q 040319 373 AALLDMLTRCGRMADAEKMFYRWPTD------RDD---SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTS 443 (812)
Q Consensus 373 ~~Li~~y~~~g~~~~A~~~f~~~~~~------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ 443 (812)
..-++.+.+..+.+-|.++-.-+... +++ ..-|..+....++....+.-+..|+.|.- .-.-|+..+...
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHH
Confidence 33444444444544444443322211 111 22355566777888888888889998887 778889999999
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChh---HHHHHHHHHHhcCCh
Q 040319 444 VLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIV---SWNGLIAGHLLHRQG 520 (812)
Q Consensus 444 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~ 520 (812)
+++|....+.++...+++..++..|.........-+...+++.. ..|+.. -+.....-++ ..-.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~ 505 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIK 505 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999988888775433222222222222211 113222 1111111111 1111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHH---hhcCChHHHH
Q 040319 521 DEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVL---GYWGFLEEAE 597 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l---~~~g~~~~A~ 597 (812)
+.....-.+|.+....|....-..+ .+.+ .|..++|+++|..+.+.++-.|.....++|+... .+......|.
T Consensus 506 e~~e~~~~R~r~~~~~~t~l~~ia~--Ll~R--~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 506 EAYESQPIRQRAQDWPATSLNCIAI--LLLR--AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHhhHHHHHhccCChhHHHHHHH--HHHH--cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 2222334456665555555443333 3445 8888888888888866566666666666655443 3444555555
Q ss_pred HHHHhC
Q 040319 598 ETINNM 603 (812)
Q Consensus 598 ~~~~~m 603 (812)
..++-|
T Consensus 582 ~~lQ~a 587 (625)
T KOG4422|consen 582 EVLQLA 587 (625)
T ss_pred HHHHHH
Confidence 555544
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=4.5e-15 Score=168.86 Aligned_cols=326 Identities=8% Similarity=-0.094 Sum_probs=263.0
Q ss_pred hHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHH
Q 040319 335 FTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYA 413 (812)
Q Consensus 335 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~ 413 (812)
.....++..+.+.|+++.+..++..++.....+....+. ++......|++++|...|+++... +++...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345566777888999999999999998876665444444 446666799999999999997633 445677888899999
Q ss_pred HcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHH
Q 040319 414 RSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNA 492 (812)
Q Consensus 414 ~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 492 (812)
+.|++++|+..|++... +.|+.. .+..+...+...|+.+.|...+..+......+ ...+..+ ..+.+.|++++|
T Consensus 122 ~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 122 KSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHH
Confidence 99999999999999987 667654 56677788999999999999999887755333 2333333 347889999999
Q ss_pred HHHHccCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHH----HHHH
Q 040319 493 IKAFNKMPSH----DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDS----CRKL 563 (812)
Q Consensus 493 ~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~----a~~~ 563 (812)
...++.+.+. +...+..+...+...|++++|+..|+++.+ ..|+. ..+..+..++.. .|++++ |...
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~~Lg~~l~~--~G~~~eA~~~A~~~ 272 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRRSLGLAYYQ--SGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHH--cCCchhhHHHHHHH
Confidence 9999987552 334445567788999999999999999998 56765 556666677777 898885 8999
Q ss_pred HHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 564 FLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 564 ~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
|+...+ +.|+ ...+..+..++.+.|++++|+..+++.. ..|+ ..++..+..++...|+.+.|...++++++.+|
T Consensus 273 ~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 273 WRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 998876 4565 6789999999999999999999999865 5664 66777888889999999999999999999999
Q ss_pred CCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 641 QDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 641 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
+++..+..++.+|...|++++|...+++..+..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 988777778999999999999999999876543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=1.4e-13 Score=156.74 Aligned_cols=427 Identities=13% Similarity=0.077 Sum_probs=208.1
Q ss_pred HHHcCCChhHHHHHHHHhHhcCCCCCCcc-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 040319 175 SVVNEFEYEKAFELFRDMKRDNGFTVDYF-TISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRV 253 (812)
Q Consensus 175 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 253 (812)
...+.|+++.|++.|++.. . ..|+.. ....++..+...|+.++|...++..+. .-.........+...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL-~--~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEES-K--AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHH-h--hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCH
Confidence 3567888888888888773 2 345542 222666667777888888887777761 1122223333335567777888
Q ss_pred HHHHHHHhcCCCC---cchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHh--CCChHHHHHHHHHHHHc
Q 040319 254 KDVVALLERMPVM---DIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCK--NGKAMEALGLFVKLLEE 328 (812)
Q Consensus 254 ~~A~~l~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~ 328 (812)
++|.++|+++.+. +...+..++..|.+.++.++|++.++++...+......+..+|.. .++..+|++.++++.+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 8888887777422 345555666777777777777777777765443322223333333 44554577777777765
Q ss_pred CCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHH
Q 040319 329 GLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSM 408 (812)
Q Consensus 329 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~l 408 (812)
. |+ +...+..++....+.|-...|.++..+-+ .--+...+.-+
T Consensus 199 ~--P~----------------------------------n~e~~~~~~~~l~~~~~~~~a~~l~~~~p-~~f~~~~~~~l 241 (822)
T PRK14574 199 A--PT----------------------------------SEEVLKNHLEILQRNRIVEPALRLAKENP-NLVSAEHYRQL 241 (822)
T ss_pred C--CC----------------------------------CHHHHHHHHHHHHHcCCcHHHHHHHHhCc-cccCHHHHHHH
Confidence 3 33 22233333344444444444444443322 10000000000
Q ss_pred ----HHHHH---------HcCC---hhhHHHHHHHhcccCCCCCChhh-H----HHHHHHhcCccchHHHHHHHHHHHHh
Q 040319 409 ----ICGYA---------RSGK---PEHAILLFHQSQSEATVVPDEIA-L----TSVLGVCGTLGFHEMGKQIHSYALKT 467 (812)
Q Consensus 409 ----i~~~~---------~~g~---~~~A~~~~~~m~~~~g~~p~~~t-~----~~ll~a~~~~~~~~~a~~~~~~~~~~ 467 (812)
+.-.+ ..++ .+.|+.-++.+...-+-.|.... | .=.+-++...++...+...++.+...
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 00000 0111 23334444443321222232111 1 11223444555555555555555555
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSH---------DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
+.+....+--++.++|...++.++|..+|..+..+ +......|.-+|...+++++|..+++++.+. .|-
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~ 399 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPY 399 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCc
Confidence 54444445555566666666666666665554321 1112244555555566666666666655541 110
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 040319 539 AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWR 613 (812)
Q Consensus 539 ~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 613 (812)
.+. . +.. ..-.|+ ...+..++..+...|++.+|++.++++. ..| |..++.
T Consensus 400 ~~~---~---~~~-------------------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~ 454 (822)
T PRK14574 400 QVG---V---YGL-------------------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRI 454 (822)
T ss_pred EEe---c---cCC-------------------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 000 0 000 000011 1222333444455555555555555543 233 444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 614 ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 614 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
.+...++..|+...|+..++.+..++|++..+...++..+-+.|+|++|.++.+..
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555554444
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=1.2e-12 Score=152.50 Aligned_cols=408 Identities=8% Similarity=-0.078 Sum_probs=196.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcC---CCCCcchHHHHHHHHHc
Q 040319 102 FVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDEL---PHKDTVSWNTVISSVVN 178 (812)
Q Consensus 102 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~---~~~~~~~~~~li~~~~~ 178 (812)
..-.+......|+.++|.+++....... +.+...+..+...+.+.| +.+.|.+++++. ...+...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3334444444455555544444443311 222333444444455555 555555555542 12234445555566666
Q ss_pred CCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 040319 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVA 258 (812)
Q Consensus 179 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (812)
.|++++|+..+++.... .|+...+..+..++...|+.+.|...+..+++.. +.+..++..+...+...|..+.|..
T Consensus 96 ~g~~~eA~~~l~~~l~~---~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG---APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 66666666666665222 2322224455555556666666666666666543 2334444455666666666666766
Q ss_pred HHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHH-----HhCCCh---HHHHHHHHHHHHc-C
Q 040319 259 LLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGY-----CKNGKA---MEALGLFVKLLEE-G 329 (812)
Q Consensus 259 l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~-----~~~g~~---~~A~~l~~~m~~~-g 329 (812)
.++.... ++.....+ . ......++... ...+++ ++|++.++.+.+. .
T Consensus 172 ~l~~~~~-~p~~~~~l-~----------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 172 AIDDANL-TPAEKRDL-E----------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHhCCC-CHHHHHHH-H----------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 5555443 11000000 0 00000011111 111222 4556666666543 1
Q ss_pred CCCCHh-HHH----HHHHHhccchhhhhHHHHHhhHHHhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce-
Q 040319 330 LVLTEF-TLT----SVVNACGLIMEAKLSEQIHGFVMKFGLG-SNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS- 402 (812)
Q Consensus 330 ~~p~~~-t~~----~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~- 402 (812)
..|+.. .+. ..+.++...++.+.|...++.+.+.+.. |+ .....+...|...|++++|...|+++....|..
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 222221 110 0022233445555555555555554422 21 112224556777777777777777754222211
Q ss_pred ----eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCc---hhH
Q 040319 403 ----IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSD---LGV 475 (812)
Q Consensus 403 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~ 475 (812)
..+..+..++...|++++|++.++++.. ..|......... .-.|+ ...
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~---~~P~~~~~~~~~----------------------~~~p~~~~~~a 361 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTIN---NSPPFLRLYGSP----------------------TSIPNDDWLQG 361 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhh---cCCceEeecCCC----------------------CCCCCchHHHH
Confidence 1234455566777778888777777765 223211000000 00112 123
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcC
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT-FVLIISAYRY 551 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~ 551 (812)
+..+...+...|+.++|..+++++.. .+...+..+...+...|++++|++.+++.++ +.||... +.........
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHH
Confidence 34455566666666666666666543 3345566666666666666666666666666 5566532 2222223334
Q ss_pred CCCchHHHHHHHHHHhhh
Q 040319 552 TNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 552 ~~~g~~~~a~~~~~~m~~ 569 (812)
.|++++|...++.+.+
T Consensus 440 --~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 440 --LQEWRQMDVLTDDVVA 455 (765)
T ss_pred --hCCHHHHHHHHHHHHH
Confidence 5666666666666665
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.2e-12 Score=126.29 Aligned_cols=307 Identities=13% Similarity=0.142 Sum_probs=170.9
Q ss_pred HhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHc--cCChhh-HHHHHhcCC-----------------------C
Q 040319 8 SVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLK--LGHVAD-AYKIFYGLS-----------------------S 61 (812)
Q Consensus 8 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~-A~~~f~~~~-----------------------~ 61 (812)
...+|.+..+--+++.|...|.+.+..+--.|+..-+- ..++.- -.+.|-.|. .
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 44567888888889999888877777666666554332 222211 122232222 1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 040319 62 PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALM 141 (812)
Q Consensus 62 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 141 (812)
.+..+|..||.++++--..+.|.++|++-.....+.+..+||.+|.+..- ..++.+..+|+...+.||.+++|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 23345555666666555556666666655555555555566555544332 22345555555555555555555555
Q ss_pred HHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHH-
Q 040319 142 GLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLME- 220 (812)
Q Consensus 142 ~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~- 220 (812)
...++.| .++.|++ .|++++.+| +.-|+.|...+|..+|.-+.+.++...
T Consensus 281 ~c~akfg-~F~~ar~---------------------------aalqil~Em-KeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 281 SCAAKFG-KFEDARK---------------------------AALQILGEM-KEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HHHHHhc-chHHHHH---------------------------HHHHHHHHH-HHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 5555555 4444442 356677777 777788887777777777766666533
Q ss_pred HHHHHHHHHHh--C--C----CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhc
Q 040319 221 GRAVHAHAIRI--G--L----GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFD 292 (812)
Q Consensus 221 a~~~~~~~~~~--g--~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 292 (812)
+..+..++... | + +.|...+...++.|.+..+.+-|.++-.-.. .|+- +.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~----------------tg~N------~~ 389 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK----------------TGDN------WK 389 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH----------------cCCc------hh
Confidence 33344444321 1 1 2234455556666666666666666332221 1110 00
Q ss_pred cCCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCch
Q 040319 293 KMPE--KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSND 369 (812)
Q Consensus 293 ~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 369 (812)
.|.. ....-|..+....++....+.-+.+|+.|+-+-.-|+..+...++.|....+.++...+++..++..|.....
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 0110 0112244455556666666666777777766666677777777777777777777777777666666544333
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=2.2e-12 Score=147.12 Aligned_cols=453 Identities=11% Similarity=0.047 Sum_probs=297.7
Q ss_pred HHhhhcCCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHH---HHHHhcC
Q 040319 142 GLYGKFSFCLDYLLKLFDELPHKDTV---SWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTL---LTACTGC 215 (812)
Q Consensus 142 ~~y~~~g~~~~~a~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l---l~~~~~~ 215 (812)
-...+.| +++.|...|++..+.+.. ....++..+...|+.++|+..+++. . .|+...+..+ ...+...
T Consensus 42 ii~~r~G-d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka-~----~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 42 IIRARAG-DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY-Q----SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHhCC-CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh-c----cCCCCCHHHHHHHHHHHHHc
Confidence 3456789 999999999988753322 2338889999999999999999988 3 5544443333 4467788
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHh--hCChhHHHHHhcc
Q 040319 216 FVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYME--FGYVDLAVEIFDK 293 (812)
Q Consensus 216 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~f~~ 293 (812)
|+++.|.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.+++
T Consensus 116 gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 116 KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999999876 44467777889999999999999999999976555433334445554 5556569999999
Q ss_pred CCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchh
Q 040319 294 MPE--K-NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDC 370 (812)
Q Consensus 294 m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 370 (812)
+.+ | +...+..+..+..+.|-...|+++..+- |+.++=..... .-.......++.+..++..
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~---------l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ---------LERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH---------HHHHHHHHHHhhccccccc
Confidence 876 3 4456677888899999999998777652 33222111110 0001111222222211110
Q ss_pred HHHHHHHHHHhcCCHHHHHHH----HhcCCCCCCceeee----HHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHH
Q 040319 371 IEAALLDMLTRCGRMADAEKM----FYRWPTDRDDSIIW----TSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALT 442 (812)
Q Consensus 371 ~~~~Li~~y~~~g~~~~A~~~----f~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~ 442 (812)
-- . +.--.+.|..- +..+...++....| --.+-++...|++.++++.|+.+.. .+.+....+-.
T Consensus 260 ~~----~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~-~~~~~P~y~~~ 331 (822)
T PRK14574 260 ET----E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA-EGYKMPDYARR 331 (822)
T ss_pred ch----h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh-cCCCCCHHHHH
Confidence 00 0 00012222222 22222112211112 1234567778888888888888887 66543444667
Q ss_pred HHHHHhcCccchHHHHHHHHHHHHhC-----CCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 040319 443 SVLGVCGTLGFHEMGKQIHSYALKTG-----FSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLH 517 (812)
Q Consensus 443 ~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 517 (812)
.+.+++...+.+++|..++..+.... ..++......|.-+|...+++++|..+++.+.+..+ | .+.-+
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p--~--~~~~~--- 404 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP--Y--QVGVY--- 404 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--c--EEecc---
Confidence 78888888888888888888876643 123444457889999999999999999998876222 1 00000
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHH
Q 040319 518 RQGDEALAVWSSMEKASIKPDAITFV-LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 596 (812)
|... ..-.||-.... .+...+.. .|++.+|++.++.+... -+-+......+.+++...|+..+|
T Consensus 405 ~~~~-----------~~pn~d~~~~~~l~a~~~~~--~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 405 GLPG-----------KEPNDDWIEGQTLLVQSLVA--LNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred CCCC-----------CCCCccHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 0000 11334443332 23334555 78888888888888652 233578888899999999999999
Q ss_pred HHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 597 EETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 597 ~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
++.++... ..|+ ..+......+....++.++|+.+.+.+++..|+++.+-
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99997765 5674 55666777778888999999999999999999987543
No 30
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.61 E-value=1.3e-11 Score=132.73 Aligned_cols=633 Identities=12% Similarity=0.025 Sum_probs=318.3
Q ss_pred HHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040319 18 KAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSP----NVVSFTSLISGLAKLGREEEAIELFFRMRSE 93 (812)
Q Consensus 18 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 93 (812)
..++..+...|+.|+..+|.+||..||..|+.+.|- +|..|.-+ +...++.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 456778889999999999999999999999999999 88777532 2334555665555555554443
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHH---HHHHH----HhCC-----------------CCchHH----------HHH
Q 040319 94 GIVPNEHSFVAILTACIRLLELELGFQI---HALIV----KMGC-----------------VDSVFV----------TNA 139 (812)
Q Consensus 94 g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~----~~g~-----------------~~~~~~----------~~~ 139 (812)
.|.+.||..++.+|...||+..-..+ +..+. ..|+ -||... |..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 45566666666666666654431111 11111 1111 111100 011
Q ss_pred HHHHhhhc-------------------CCCHHHHHHHHhcCC-CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC
Q 040319 140 LMGLYGKF-------------------SFCLDYLLKLFDELP-HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFT 199 (812)
Q Consensus 140 li~~y~~~-------------------g~~~~~a~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 199 (812)
++....++ ...++....+..... .++..++.+++..-..+|+.+.|..++.+| ++.|++
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~gfp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKGFP 236 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcCCC
Confidence 11111000 001111111111222 267777778887777888888888888888 777888
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHH
Q 040319 200 VDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYM 279 (812)
Q Consensus 200 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~ 279 (812)
.+.+-|-.+|-+ .++......+..-|...|+.|+..|+...+-.+.++|....+....+--..-....+..+..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 777776666654 66777777777788888888888887777766666554333222111100001111222222211
Q ss_pred hhCChhHHH--HHhccCCC-------CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC-HhHHHHHHHHhccc
Q 040319 280 EFGYVDLAV--EIFDKMPE-------KNSVSYNALLAGYCKNGKAMEALGLFVKLLEE--GLVLT-EFTLTSVVNACGLI 347 (812)
Q Consensus 280 ~~g~~~~A~--~~f~~m~~-------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~-~~t~~~ll~a~~~~ 347 (812)
.+.+++.-. -+....++ ....+|...+. ....|.-++..++-..|..- ...|+ ...|..++.-+.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 111111100 01111111 11122322222 22245555555555555321 11221 11232222222111
Q ss_pred hhhhhHHHHHhhHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCCceeee-----------HHHHHH
Q 040319 348 MEAKLSEQIHGFVMKFGLGSN--DCIEAALLDMLTRCGRMADAEKMFYRWPT---DRDDSIIW-----------TSMICG 411 (812)
Q Consensus 348 ~~~~~a~~i~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~-----------~~li~~ 411 (812)
-.......++. ...|+..+ +...--+.....+. +...+.+-+..+.. .++ ..+| +.++..
T Consensus 393 ~e~~~~~~i~~--~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~-he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 393 IERHICSRIYY--AGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERS-HEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHhhHHHHHHH--HHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcc-cccchhhhhHHHHHHHHHHHH
Confidence 11110000000 00011000 00000001110000 11111111111110 112 2222 233444
Q ss_pred HHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHH--hCCCCchhHHHHHHHHhhhcCCH
Q 040319 412 YARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALK--TGFSSDLGVANSMVSMYFKCCNM 489 (812)
Q Consensus 412 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~k~g~~ 489 (812)
++..-+..+++..-+.... . .-| ..|..+++-|.....++.|..+.+.... ..+..|..-+..+.+...+.+..
T Consensus 469 l~se~n~lK~l~~~ekye~-~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYED-L-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHH-H-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 4444444444433322221 1 111 4577888888888888888888877653 23455777788888888888888
Q ss_pred HHHHHHHccCCC-----CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----------------------------
Q 040319 490 SNAIKAFNKMPS-----HD-IVSWNGLIAGHLLHRQGDEALAVWSSMEKASI---------------------------- 535 (812)
Q Consensus 490 ~~A~~~f~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------- 535 (812)
.++..++.++.+ |+ ..+.--+.++-+..|+.+...++++-+...|+
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~q 624 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQ 624 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHH
Confidence 888888888875 22 12333455566667777666666665555443
Q ss_pred --CCCHHHHHHHHHHhcCCCCchHHHHHHH------HHHhh---------hhcCcc---------------C--------
Q 040319 536 --KPDAITFVLIISAYRYTNLNLVDSCRKL------FLSMK---------TIYNIE---------------P-------- 575 (812)
Q Consensus 536 --~pd~~t~~~ll~a~~~~~~g~~~~a~~~------~~~m~---------~~~~~~---------------p-------- 575 (812)
+|.......+.....+....+++.+..+ |.+.. +-.|+. |
T Consensus 625 kyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt 704 (1088)
T KOG4318|consen 625 KYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELT 704 (1088)
T ss_pred HhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHH
Confidence 2222222222222211001222222211 11110 001110 0
Q ss_pred -CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHccCCC---CCchHHH
Q 040319 576 -TSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRL---NTTIGKRVAKHILAMEPQ---DPATYIL 648 (812)
Q Consensus 576 -~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~---~~~~~~~ 648 (812)
+..+..-|...|.+.|+++.|..++.++++.|+.....-|....+.+. ++.++...-+++-++.|. +...|.-
T Consensus 705 ~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~ 784 (1088)
T KOG4318|consen 705 HELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEG 784 (1088)
T ss_pred hHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhh
Confidence 111223466789999999999999999998898888888888877654 566777777777776654 3333444
Q ss_pred HHhhhhhCCCcchHHHHHHHHHhCCCC
Q 040319 649 VSNLYSSSGRWHNSELVREDMREKGFR 675 (812)
Q Consensus 649 l~~~y~~~g~~~~a~~~~~~m~~~g~~ 675 (812)
.+-+..+....+.|.+.+.+..++...
T Consensus 785 ~a~~a~q~~qkkaAkk~f~r~eeq~~v 811 (1088)
T KOG4318|consen 785 YAFFATQTEQKKAAKKCFERLEEQLTV 811 (1088)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHccCC
Confidence 444444445555788888888877443
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=1.9e-10 Score=124.66 Aligned_cols=633 Identities=12% Similarity=0.066 Sum_probs=373.0
Q ss_pred cCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhc---CCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 040319 11 CGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYG---LSSPNVVSFTSLISGLAKLGREEEAIELF 87 (812)
Q Consensus 11 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 87 (812)
.|+++.|..++.++++.. +.+...|..|...|-..|+.+++...+-. +...|..-|-.+-.-..+.|++++|.-+|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 499999999999999886 56778899999999999999998877643 34556678888888888999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHH----HHHhhhcCCCHHHHHHHHhcCCC
Q 040319 88 FRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNAL----MGLYGKFSFCLDYLLKLFDELPH 163 (812)
Q Consensus 88 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~~a~~~f~~~~~ 163 (812)
.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.-.+ +..|...+ .-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~-~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN-ERERAAKALEGALS 308 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence 9988764 344444444456777889999999988888877544443333333 34455556 55777777776553
Q ss_pred -----CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCC----------------------cchHH----HHHHHH
Q 040319 164 -----KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVD----------------------YFTIS----TLLTAC 212 (812)
Q Consensus 164 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd----------------------~~t~~----~ll~~~ 212 (812)
-+...+|.++..|.+...++.|......+ ......+| ...|. -+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~-~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDD-RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHH-hccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 35567888999999999999999988887 44111121 11111 122223
Q ss_pred hcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CcchhHHHHHHHHHhhCChhH
Q 040319 213 TGCFVLMEGRAVHAHAIRIG--LGANLSVNNALIGFYTKCGRVKDVVALLERMPV----MDIITLTEIIIAYMEFGYVDL 286 (812)
Q Consensus 213 ~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~----~~~~~~~~li~~~~~~g~~~~ 286 (812)
......+....+.....+.. ..-+...|.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 44555555666666666666 344567788888999999999999999888753 356788888999999999999
Q ss_pred HHHHhccCCCCCcccHH---HHHHHHHhCCChHHHHHHHHHHHHc--------CCCCCHhHHHHHHHHhccchhhhhHHH
Q 040319 287 AVEIFDKMPEKNSVSYN---ALLAGYCKNGKAMEALGLFVKLLEE--------GLVLTEFTLTSVVNACGLIMEAKLSEQ 355 (812)
Q Consensus 287 A~~~f~~m~~~d~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~~t~~~ll~a~~~~~~~~~a~~ 355 (812)
|.+.|+....-++...+ .|-..+.+.|+.++|++.+..+... +..|+..........+.+.|+.++=..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99988888764444333 4556788889999998888886521 122222222222222333333333222
Q ss_pred HHhhHHHhcCCCchhHHHHHHHHHHhcCCH----HHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHH------HH
Q 040319 356 IHGFVMKFGLGSNDCIEAALLDMLTRCGRM----ADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAIL------LF 425 (812)
Q Consensus 356 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~----~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~------~~ 425 (812)
+-.. |++.+.+...+ .+++..-..-...+-...+.-.++.+-.+.++...... .+
T Consensus 548 t~~~---------------Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 548 TAST---------------LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHH---------------HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 2222 22211111000 00000000000000001112222333222222111111 11
Q ss_pred HHhcccCCCCCChh--hHHHHHHHhcCccchHHHHHHHHHHHHhCC--CCch---hHHHHHHHHhhhcCCHHHHHHHHcc
Q 040319 426 HQSQSEATVVPDEI--ALTSVLGVCGTLGFHEMGKQIHSYALKTGF--SSDL---GVANSMVSMYFKCCNMSNAIKAFNK 498 (812)
Q Consensus 426 ~~m~~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~---~~~~~Li~~y~k~g~~~~A~~~f~~ 498 (812)
..-.. .++.-+.. -+.-++.+.++.+.+++|..+...+..... .++. ..-...+.+....+++..|...++.
T Consensus 613 ~~~e~-~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 613 RAVEL-RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhh-ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11111 22222221 234455566777777777777776665431 1221 2234445556667778888777766
Q ss_pred CCCC-----C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 499 MPSH-----D---IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 499 ~~~~-----~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
|... + ...||...+...+.|+-.--..++..... ..|+......++.+-.....+.+..|..++-....
T Consensus 692 ~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~- 768 (895)
T KOG2076|consen 692 VITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR- 768 (895)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH-
Confidence 6542 3 24677666666666554444444433332 33333111111111000014556677766554443
Q ss_pred cCccCCcchHH-HHHHHH----------hhcCChHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 571 YNIEPTSEHYA-SLVSVL----------GYWGFLEEAEETINNMP-F-QP--KVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 571 ~~~~p~~~~y~-~li~~l----------~~~g~~~~A~~~~~~m~-~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
..|+...++ ||.-++ .|.-.+-+++.++++-. . .+ ..-++-.+..+|..-|-+..|...++++
T Consensus 769 --~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 769 --QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred --hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 356633333 222222 12223445555554432 1 22 3456778899999999999999999999
Q ss_pred HccCCCCC------------chHHHHHhhhhhCCCcchHHHHHHH
Q 040319 636 LAMEPQDP------------ATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 636 ~~~~p~~~------------~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
+++.|.+. .+-..|.-||-.+|+..-|.++.++
T Consensus 847 L~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 847 LEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred hCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 99976532 2344678899999999999988764
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=2.8e-11 Score=130.98 Aligned_cols=516 Identities=13% Similarity=0.133 Sum_probs=341.9
Q ss_pred hhhcCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHH
Q 040319 144 YGKFSFCLDYLLKLFDELPH---KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLME 220 (812)
Q Consensus 144 y~~~g~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~ 220 (812)
+++ | ++++|.+++.++.. ++...|-+|...|-+.|+.++++..+-.. .+-.+-|..-|..+-.-..+.|.+++
T Consensus 150 far-g-~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 150 FAR-G-DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHh-C-CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHH
Confidence 444 8 89999999988764 57789999999999999999998877544 22233455677788888889999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcc--------hhHHHHHHHHHhhCChhHHHHHhc
Q 040319 221 GRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDI--------ITLTEIIIAYMEFGYVDLAVEIFD 292 (812)
Q Consensus 221 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~f~ 292 (812)
|.-.+..+++.. +++....---..+|-+.|+...|..-|.++-+.+. .+-..+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999876 44444444456789999999999988887743322 223335667778888899998888
Q ss_pred cCCC--C---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh----------------------HH----HHHH
Q 040319 293 KMPE--K---NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEF----------------------TL----TSVV 341 (812)
Q Consensus 293 ~m~~--~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------------------t~----~~ll 341 (812)
.... . +...++.++..|.+...++.|......+......+|.. .| .-+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7664 2 34468899999999999999999988887722222221 11 1223
Q ss_pred HHhccchhhhhHHHHHhhHHHhc--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--CceeeeHHHHHHHHHcCC
Q 040319 342 NACGLIMEAKLSEQIHGFVMKFG--LGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDR--DDSIIWTSMICGYARSGK 417 (812)
Q Consensus 342 ~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~--~~~~~~~~li~~~~~~g~ 417 (812)
-++.+....+....+...+.... +.-+...+.-+.++|...|++.+|.++|..+.... .+...|--+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34456666777777777777777 44567788899999999999999999999987332 236689999999999999
Q ss_pred hhhHHHHHHHhcccCCCCCChhh-HHHHHHHhcCccchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHhhhcCC
Q 040319 418 PEHAILLFHQSQSEATVVPDEIA-LTSVLGVCGTLGFHEMGKQIHSYAL--------KTGFSSDLGVANSMVSMYFKCCN 488 (812)
Q Consensus 418 ~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~ 488 (812)
+++|++.|..... ..|+..- -.++-..+..+|+.++|.+.+..+. ..+..|+..+.--..+.|.+.|+
T Consensus 465 ~e~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 465 YEEAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999987 6676653 2344456678899999999888743 34456677777777888899998
Q ss_pred HHHHHHHHccCCC---------C-----------------ChhHHHHHHHHHHhcCChHHHHH------HHHHHHHCCCC
Q 040319 489 MSNAIKAFNKMPS---------H-----------------DIVSWNGLIAGHLLHRQGDEALA------VWSSMEKASIK 536 (812)
Q Consensus 489 ~~~A~~~f~~~~~---------~-----------------~~~~~~~li~~~~~~g~~~~A~~------l~~~m~~~g~~ 536 (812)
.++=..+-..|.. | +...-..++.+-.+.++.....+ .+.--...|+.
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 8875444333321 1 11111122222222222111110 01111112222
Q ss_pred CCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcc----hHHHHHHHHhhcCChHHHHHHHHhCC------
Q 040319 537 PDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSE----HYASLVSVLGYWGFLEEAEETINNMP------ 604 (812)
Q Consensus 537 pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~li~~l~~~g~~~~A~~~~~~m~------ 604 (812)
-+. .-|.-++.+..+ .+.+++|..+...+...+-+.-+.. .-.+++.+....+++.+|.+.++.|.
T Consensus 622 iddwfel~~e~i~~L~k--~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAK--LQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred HHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 222 223444445555 7777888777776665333332222 23455566667777888877777764
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-CchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 605 FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD-PATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 605 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
..| -...|+..++....+++-.--.+...+++...|++ +..+...+......|.|..|...+-+.
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra 766 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA 766 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH
Confidence 133 24466666666666666555556666666666666 555556666777777777777755443
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=3.3e-09 Score=110.76 Aligned_cols=459 Identities=11% Similarity=0.005 Sum_probs=283.0
Q ss_pred HHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcC
Q 040319 176 VVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAI----RIGLGANLSVNNALIGFYTKCG 251 (812)
Q Consensus 176 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g 251 (812)
|++..-++.|..++... + ..++-|...|.+....=-..|+.+....+.+..+ ..|+..+..-|-.=...+-+.|
T Consensus 416 larLetYenAkkvLNka-R-e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKA-R-EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHH-H-hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 33444455666666655 2 2344555555554444445555555555554433 3344544444444444444444
Q ss_pred ChHHHHHHHhcCC-----CC-cchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHH
Q 040319 252 RVKDVVALLERMP-----VM-DIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLF 322 (812)
Q Consensus 252 ~~~~A~~l~~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~ 322 (812)
.+-.+..+..... +. --.||+.-...|.+.+.++-|..+|....+ .+...|......--..|..++-..+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4444443333221 00 113344444444444444444444443332 22334444444434444555555555
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCCc
Q 040319 323 VKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPT-DRDD 401 (812)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~ 401 (812)
++....- | -....+-....-+-..|++..|+.++.+.-. .+++
T Consensus 574 qkav~~~--p----------------------------------kae~lwlM~ake~w~agdv~~ar~il~~af~~~pns 617 (913)
T KOG0495|consen 574 QKAVEQC--P----------------------------------KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNS 617 (913)
T ss_pred HHHHHhC--C----------------------------------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc
Confidence 5554431 1 1122222233334455677777666655431 2334
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
...|-+-+..-..+..+++|..+|.+.+. ..|+...|.--+..--.++..++|.++++..++. ++.-...|-.+..
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 56677777777777778888888777765 5566666655555555567777888887777763 3444567777788
Q ss_pred HhhhcCCHHHHHHHHccCCC--CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS--HDI-VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLV 557 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~ 557 (812)
.|-..++++.|+..|..=.. |+. ..|-.|...--+.|..-.|..++++.+. -.|+. ..|...+..=.+ .|..
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR--~gn~ 769 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELR--AGNK 769 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHH--cCCH
Confidence 88888888888887765444 543 4666666666777888888888888877 34544 566667776666 8888
Q ss_pred HHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 558 DSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
+.|..+..+..++ .+.+-..|.--|.+..+.++-..+.+.+++-. -|+.+.-++...+.....++.|...++++++
T Consensus 770 ~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 770 EQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888887777653 44456778888888888888777777777764 4555555666677788889999999999999
Q ss_pred cCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEEC
Q 040319 638 MEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQ 686 (812)
Q Consensus 638 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~ 686 (812)
.+|++..++..+-..+...|.-++-.+++++.... ++.-|..|..+.
T Consensus 846 ~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 846 KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 99999999999999999999999999999987653 334477786543
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=2.3e-11 Score=130.80 Aligned_cols=538 Identities=12% Similarity=0.025 Sum_probs=294.1
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCC
Q 040319 85 ELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHK 164 (812)
Q Consensus 85 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~ 164 (812)
.++..|...|+.|+..||.+++..|+..|+++.|- ++..|.-........+++.++......+ +.+.+. +|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-------CC
Confidence 35566777888888888888888888888888887 8888887777777788888888877777 666555 67
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHH-hHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHH-hCCCCchhHHHH
Q 040319 165 DTVSWNTVISSVVNEFEYEKAFELFRD-MKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIR-IGLGANLSVNNA 242 (812)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~ 242 (812)
...+|..|..+|.+.||... ++..++ | ..+...+...|.......++-.+.- -+.-||.. .
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdL-------------e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDL-------------ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHH-------------HHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---H
Confidence 77888888888888888765 222222 2 1222223333333222222222111 12233332 2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCcch-hHHHHHHHHHh-hCChhHHHHHhccCCC-CCcccHHHHHHHHHhCCChHHHH
Q 040319 243 LIGFYTKCGRVKDVVALLERMPVMDII-TLTEIIIAYME-FGYVDLAVEIFDKMPE-KNSVSYNALLAGYCKNGKAMEAL 319 (812)
Q Consensus 243 li~~~~~~g~~~~A~~l~~~~~~~~~~-~~~~li~~~~~-~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~ 319 (812)
++....-.|-++.+.+++..++..... +...+++-... ...+++-........+ ++..++.+++..-..+|+.+.|.
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 233334456666666666666522110 11111222111 1223444444444444 88899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 040319 320 GLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDR 399 (812)
Q Consensus 320 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 399 (812)
.++.+|.+.|+..+..-|-.++-+ .++......+..-|...|+.|+..++.--+....+.|....+.... +
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s------q 295 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS------Q 295 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc------c
Confidence 999999999999999888888766 7778888888888999999999999887776666655533222211 1
Q ss_pred CceeeeHHHHHHHHHcCChhhHHHHHH------------HhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh
Q 040319 400 DDSIIWTSMICGYARSGKPEHAILLFH------------QSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKT 467 (812)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~------------~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 467 (812)
. ...+++-...-+-.| ..|.+.++ +-.- .|+.-....|.... -...+|.-+...++.+.+..-
T Consensus 296 ~-~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fL-lg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~np 370 (1088)
T KOG4318|consen 296 L-AHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFL-LGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNP 370 (1088)
T ss_pred h-hhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHH-hccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCC
Confidence 1 112222222222222 22222221 1111 12222222222111 111244444555554444321
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCH-----
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLL---HRQGDEALAVWSSMEKASIKPDA----- 539 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~----- 539 (812)
-+ ..-+.-+++|. +.+.+.|.++..+....-.-.-.+... ..+..+..++... ..||.
T Consensus 371 t~----r~s~~~V~a~~-----~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~l 436 (1088)
T KOG4318|consen 371 TL----RDSGQNVDAFG-----ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQL 436 (1088)
T ss_pred cc----ccCcchHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHH
Confidence 11 11111111111 223444444444322111111111111 1111111111111 12221
Q ss_pred -----------------------HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHH
Q 040319 540 -----------------------ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 540 -----------------------~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 596 (812)
..-+.++..|.. .-+..++...-+.... +-+ ...|..||+.+.+..++++|
T Consensus 437 v~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s--e~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~A 510 (1088)
T KOG4318|consen 437 VGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS--EYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYA 510 (1088)
T ss_pred hhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHH
Confidence 111222223322 2223333322222211 111 26788999999999999999
Q ss_pred HHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc---cCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 597 EETINNMP-----FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA---MEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 597 ~~~~~~m~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
..+..+.. +.-|..-+..+.+...+++.+..+..+.+...+ ..|........+-|-.+..|+-+...++.+-
T Consensus 511 l~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~ 590 (1088)
T KOG4318|consen 511 LSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADI 590 (1088)
T ss_pred HhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 99988865 233555667777777888888777777666554 3344445566777778888888888888888
Q ss_pred HHhCCCCCCCceeEE
Q 040319 669 MREKGFRKHPSRSWI 683 (812)
Q Consensus 669 m~~~g~~~~~~~s~~ 683 (812)
+...|+.. .|.-|.
T Consensus 591 lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 591 LVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHHhhhhh-cccceE
Confidence 88777755 354453
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=1.2e-13 Score=141.75 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=105.3
Q ss_pred CccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHH
Q 040319 450 TLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVW 527 (812)
Q Consensus 450 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~ 527 (812)
..++.+.|...++.+...+-. ++..+..++.. ...+++++|.+++...-+ ++...|..++..+...|+++++.+++
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 344555555555555443322 34445556655 577788888877766533 56667777788888888888888888
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-
Q 040319 528 SSMEKASI-KPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP- 604 (812)
Q Consensus 528 ~~m~~~g~-~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~- 604 (812)
++.....- .++...|..+...+.. .|+.++|.+.++...+ ..|+ ......++.++...|+.+++.++++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~--~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQ--LGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHH--CCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 88775332 2344555556666667 8888888888888876 4565 6778888888888888888777776654
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 605 -FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 605 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
.++|+..|..+..++...|+.+.|...++++++..|+|+.....++++|...|+.++|.+++.+.
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 24466788999999999999999999999999999999999999999999999999999998775
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.44 E-value=4.4e-08 Score=102.59 Aligned_cols=578 Identities=12% Similarity=0.043 Sum_probs=391.6
Q ss_pred cCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCC---CCChhhH------------HHHHHH--
Q 040319 11 CGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS---SPNVVSF------------TSLISG-- 73 (812)
Q Consensus 11 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~------------~~li~~-- 73 (812)
.+++..|+.++....+..+ .++..|-+-.+.=-..|++..|+.+..+-- .++...| -++|.-
T Consensus 264 l~DikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4577888888888888773 233344333333345677777777774321 1111112 111111
Q ss_pred ---------HHhcCCh----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 040319 74 ---------LAKLGRE----EEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNAL 140 (812)
Q Consensus 74 ---------~~~~g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 140 (812)
+++.-+. ..-.+++++.++. .|+.+ .|-++.....+.+.|.-++...++.- +.+.. |
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~d----L 412 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMD----L 412 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHH----H
Confidence 1111111 1222334444432 23322 13344455566666777777776652 22222 4
Q ss_pred HHHhhhcCCCHHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHHHHHHHHhH---hcCCCCCCcchHHHHHHHHhc
Q 040319 141 MGLYGKFSFCLDYLLKLFDELP---HKDTVSWNTVISSVVNEFEYEKAFELFRDMK---RDNGFTVDYFTISTLLTACTG 214 (812)
Q Consensus 141 i~~y~~~g~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~~g~~pd~~t~~~ll~~~~~ 214 (812)
.-+|++.. .++.|++++.... ..+...|-+-...=-.+|+.+...++..+-. +..|+..+...|..=..+|-.
T Consensus 413 wlAlarLe-tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLE-TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 44566666 7888888887654 4577888877777778899888888875431 677999999999888889999
Q ss_pred CCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CcchhHHHHHHHHHhhCChhHHHH
Q 040319 215 CFVLMEGRAVHAHAIRIGLGAN--LSVNNALIGFYTKCGRVKDVVALLERMPV---MDIITLTEIIIAYMEFGYVDLAVE 289 (812)
Q Consensus 215 ~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 289 (812)
.|..-.+..+....+..|++.. ..+|+.-...|.+.+.++-|+.+|....+ .+...|...+..=-..|..++-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999998887543 56888888999999999999999987753 355778777777777899999999
Q ss_pred HhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCC
Q 040319 290 IFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLG 366 (812)
Q Consensus 290 ~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 366 (812)
+|++... ...+.|-...+-+-..|+...|..++....+.... +
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-s--------------------------------- 617 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-S--------------------------------- 617 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-c---------------------------------
Confidence 9988764 34556777777888889999999888887765322 2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHH
Q 040319 367 SNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVL 445 (812)
Q Consensus 367 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll 445 (812)
..++-+-+........++.|+.+|.+.....++...|.--+..---.++.++|++++++..+ .-|+-. .|..+-
T Consensus 618 --eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk---~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 618 --EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK---SFPDFHKLWLMLG 692 (913)
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH---hCCchHHHHHHHh
Confidence 22333334444555666666666665553334355555555555556677777777766665 445544 333444
Q ss_pred HHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHH
Q 040319 446 GVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDE 522 (812)
Q Consensus 446 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 522 (812)
+.+-+.++++.|+..+..-.+. .+..+..|-.|...=-+.|.+-.|+.+|++..- .|...|-..|..-.+.|..+.
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence 5556666666666665544432 344667788888888899999999999987654 567899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHH
Q 040319 523 ALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETIN 601 (812)
Q Consensus 523 A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~ 601 (812)
|..+..+.++ --|+. ..|..-|-...+ .+.-......++. .+-|+...-.+..++-...+++.|.+.|.
T Consensus 772 a~~lmakALQ--ecp~sg~LWaEaI~le~~--~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 772 AELLMAKALQ--ECPSSGLLWAEAIWLEPR--PQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred HHHHHHHHHH--hCCccchhHHHHHHhccC--cccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888 34544 666666655555 4443333333332 34566777788888889999999999999
Q ss_pred hCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 602 NMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 602 ~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
+.. ..|| ..+|--+..-+..||.-+.-..++.+...-+|.....+...+
T Consensus 842 Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 842 RAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 865 6675 568888999999999999999999999999998776665544
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=6.6e-11 Score=117.65 Aligned_cols=457 Identities=15% Similarity=0.106 Sum_probs=253.9
Q ss_pred hHHHHHHHHccCChhhHHHHHhcCCC----CChhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh----HHHHH
Q 040319 36 GNPLISAYLKLGHVADAYKIFYGLSS----PNVVSF-TSLISGLAKLGREEEAIELFFRMRSEGIVPNEHS----FVAIL 106 (812)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll 106 (812)
...|..-|.......+|+..++-+.. ||.-.. -.+-..+.+.+.+.+|+++|+..+..-...+..+ .+.+-
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 33445556666667777777765442 332211 1233456677777888887776554322222233 23333
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCC----------------CCcchHH
Q 040319 107 TACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPH----------------KDTVSWN 170 (812)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~----------------~~~~~~~ 170 (812)
-.+.+.|.++.|...+++..+. .|+..+.-.|+-.+.-.| +.+..++.|..|.. |+....|
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 3456778888888888877765 466665555555555567 77888888876641 3333333
Q ss_pred HHH-----HHHHcCC--ChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 040319 171 TVI-----SSVVNEF--EYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNAL 243 (812)
Q Consensus 171 ~li-----~~~~~~g--~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 243 (812)
.-| +-.-+.+ +.++++-.-..+ ...-+.||-.. = .+.+.+.+..-.-..+..+... .-
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~ki-iapvi~~~fa~---g---------~dwcle~lk~s~~~~la~dlei--~k 425 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKI-IAPVIAPDFAA---G---------CDWCLESLKASQHAELAIDLEI--NK 425 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHH-hccccccchhc---c---------cHHHHHHHHHhhhhhhhhhhhh--hH
Confidence 332 2222222 122222222222 22223333211 0 0111121111111111111111 11
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCcchhHHHHHH-----HHHh-hCChhHHHHHhccCCCCCcccHHHH---HHHHHhCCC
Q 040319 244 IGFYTKCGRVKDVVALLERMPVMDIITLTEIII-----AYME-FGYVDLAVEIFDKMPEKNSVSYNAL---LAGYCKNGK 314 (812)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~-----~~~~-~g~~~~A~~~f~~m~~~d~~~~~~l---i~~~~~~g~ 314 (812)
..-|.+.|+++.|.+++.-....|..+-+.-.. -|.+ -.++.+|...-+.....|...-.++ ...-..+|+
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc
Confidence 235788999999999888776665544333222 1222 2345555555444432222111111 122345678
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 040319 315 AMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYR 394 (812)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 394 (812)
+++|.+.|++.+.....-....|++-+ .|-+.|++++|+..|-.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfnigl------------------------------------t~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGL------------------------------------TAEALGNLDEALDCFLK 549 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcc------------------------------------cHHHhcCHHHHHHHHHH
Confidence 888888888877654333333333222 25677888888888876
Q ss_pred CCC-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCc
Q 040319 395 WPT-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSD 472 (812)
Q Consensus 395 ~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 472 (812)
+.. -.+++.....+...|-...++.+|++++.+... +.| |...++-+...|-+.|+-..|.+.|-.--+ -++.+
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~s---lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~n 625 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS---LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCN 625 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcc
Confidence 541 134455666677788888889999999877664 444 444556666777777777777766644433 24567
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccC--CCCChhHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKM--PSHDIVSWNGLIAGH-LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAY 549 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~--~~~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 549 (812)
..+...|...|....-+++|..+|++. .+|+.+-|..||..| .+.|++.+|+++|++..+. +.-|......|+.-|
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 777777777777777777777777754 357777777777554 4567777777777777662 444445556666666
Q ss_pred cC
Q 040319 550 RY 551 (812)
Q Consensus 550 ~~ 551 (812)
..
T Consensus 705 ~d 706 (840)
T KOG2003|consen 705 GD 706 (840)
T ss_pred cc
Confidence 65
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.7e-11 Score=128.84 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=125.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchH
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHY 580 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 580 (812)
-.+.+|-++...|..+++.+.|++.|++.++ +.| ...+|+.+..-+.. ...+|.|...|+.... .++.||
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~--~ee~d~a~~~fr~Al~-----~~~rhY 489 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIA--TEEFDKAMKSFRKALG-----VDPRHY 489 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhh--hHHHHhHHHHHHhhhc-----CCchhh
Confidence 4567888888888888888888888888888 777 44777766665655 7778888888876654 677777
Q ss_pred HHH---HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 581 ASL---VSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 581 ~~l---i~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
+++ .-.|.+.++++.|+-.|++.. +.| +.++...+...+...|..++|...+++++-++|.|+-.-+..+.++..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 765 456788888888888888855 677 455555555667778888888888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHh
Q 040319 656 SGRWHNSELVREDMRE 671 (812)
Q Consensus 656 ~g~~~~a~~~~~~m~~ 671 (812)
.|++++|...++++++
T Consensus 570 ~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 570 LGRYVEALQELEELKE 585 (638)
T ss_pred hcchHHHHHHHHHHHH
Confidence 8888888888888865
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=5.3e-10 Score=112.92 Aligned_cols=211 Identities=15% Similarity=0.147 Sum_probs=165.4
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 040319 451 LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVW 527 (812)
Q Consensus 451 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 527 (812)
.|+.-.+.+-++.+++....+ ...|--+..+|....+.++-.+.|++..+ .|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 356666666677776644332 22255566778888888888888887664 45566666666667778999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 040319 528 SSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNM-PF 605 (812)
Q Consensus 528 ~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~ 605 (812)
++.++ +.|+. ..|.-+--+..+ .+.++++...|+..+++ ++.-++.|+-....|...+++++|.+.++.. .+
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr--~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYR--QHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99998 88876 566666666666 88999999999999874 4445899999999999999999999999874 35
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 606 QPK---------VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 606 ~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+|+ +.+-.+++-.- -.+++..|+..++++++++|....+|..|+.+-...|+.++|+++|++-
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 554 34444444443 3499999999999999999999999999999999999999999999875
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=1.8e-08 Score=101.58 Aligned_cols=479 Identities=11% Similarity=0.055 Sum_probs=295.7
Q ss_pred CHHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcc-hHHHHHHHHhcCCChHHHHHHH
Q 040319 150 CLDYLLKLFDELP---HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYF-TISTLLTACTGCFVLMEGRAVH 225 (812)
Q Consensus 150 ~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~ 225 (812)
++..|+.+|++.. .++...|--.+..=.++.....|..+++.. .. +-|-.. .|---+-.=-..|++..|+++|
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRA-vt--~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRA-VT--ILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHH-HH--hcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 5666777776554 356666666666666666677777776655 21 112111 1111111222345555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHH
Q 040319 226 AHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNAL 305 (812)
Q Consensus 226 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~l 305 (812)
..-.. ..|+...|++.|++=.+-..++.|..++++.. +..|++.+|---
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV-----------------------------~~HP~v~~wiky 213 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFV-----------------------------LVHPKVSNWIKY 213 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----------------------------eecccHHHHHHH
Confidence 55543 35555555555555555555555555554431 123455555444
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHh----ccchhhhhHHHHHhhHHHhcCCC-chhHHHHHHHHHH
Q 040319 306 LAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNAC----GLIMEAKLSEQIHGFVMKFGLGS-NDCIEAALLDMLT 380 (812)
Q Consensus 306 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~ 380 (812)
..-=-++|+...|..+|....+. --|..--..++.++ ......+.+.-++..++..-... ....|..+...--
T Consensus 214 arFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 44444555555555555554432 11122222222333 23455666777777776653322 2445555555555
Q ss_pred hcCCHHHHHHHH--------hcC-CCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-------hHHHH
Q 040319 381 RCGRMADAEKMF--------YRW-PTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-------ALTSV 444 (812)
Q Consensus 381 ~~g~~~~A~~~f--------~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-------t~~~l 444 (812)
+-|+...-.... +.+ ..++-|-.+|--.+..-...|+.+...++|++... +++|-.. .|.-+
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHH
Confidence 556543333221 222 21233456777777777778999999999999884 5666331 11111
Q ss_pred HHHh---cCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhh----hcCCHHHHHHHHccCCC--CChhHHHHHHHHHH
Q 040319 445 LGVC---GTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF----KCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHL 515 (812)
Q Consensus 445 l~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~ 515 (812)
=-+| ....+.+.+++++...++ -++....++.-+--+|+ ++.++..|.+++..... |-...+..-|..-.
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 1122 345688889999998888 34555666666655555 67899999999987654 77788888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
+.+.++....++++.++ ..|.. .++......=.. .|+.+.|..+|+-......+......|-+.||.=...|.++
T Consensus 449 qL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~--LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETS--LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHH--hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 99999999999999999 67765 666555544445 89999999999988875444445678899999999999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHcc----CCCCC--chHHHHHh
Q 040319 595 EAEETINNMP-FQPKVSVWRALLDSCR-----IRL-----------NTTIGKRVAKHILAM----EPQDP--ATYILVSN 651 (812)
Q Consensus 595 ~A~~~~~~m~-~~p~~~~~~~ll~~~~-----~~~-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~ 651 (812)
.|..+++++. -.+...+|-++..--. ..+ ++..|..+++++... +|... ......-+
T Consensus 525 kaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~ 604 (677)
T KOG1915|consen 525 KARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKN 604 (677)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999976 4566668888876433 334 677888888888653 34321 22334455
Q ss_pred hhhhCCCcchHHHHHHHHHh
Q 040319 652 LYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 652 ~y~~~g~~~~a~~~~~~m~~ 671 (812)
+-...|.-.+...|-++|++
T Consensus 605 ~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 605 MEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHhcCchhhHHHHHHhccH
Confidence 66677888888888888864
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=3e-11 Score=126.88 Aligned_cols=277 Identities=11% Similarity=0.049 Sum_probs=213.7
Q ss_pred CHHHHHHHHhcCCCCCCceeeeH--HHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHHHhcCccchHHHHHH
Q 040319 384 RMADAEKMFYRWPTDRDDSIIWT--SMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLGVCGTLGFHEMGKQI 460 (812)
Q Consensus 384 ~~~~A~~~f~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~ 460 (812)
+..+|...|..++....|.. |. .+..+|...+++++|..+|+..++...... +..+|.++|--..+ +.+...
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 46788888888763333233 43 455688889999999999999887222222 23356666533221 111122
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040319 461 HSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP 537 (812)
Q Consensus 461 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 537 (812)
+..-.-.--+..+.+|.++.++|.-+++.+.|.+.|++..+ | ...+|+-+..-+.....++.|+..|+..+. +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 22211112345788999999999999999999999999877 3 567888888888899999999999999987 777
Q ss_pred CH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 040319 538 DA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWR 613 (812)
Q Consensus 538 d~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 613 (812)
.. ..|..+...|.+ .++++.|.-.|+...+ +.|. .....++...+-+.|+.|+|++++++.- ++| |+..--
T Consensus 487 rhYnAwYGlG~vy~K--qek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLK--QEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheec--cchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 76 677788888888 9999999999999876 6775 6677888889999999999999999965 555 555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 614 ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 614 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
--...+...++.++|.+.+|++.++-|++...+..++.+|-+.|+.+.|..-+.-|.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55566677899999999999999999999999999999999999999999888777553
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.5e-09 Score=109.08 Aligned_cols=354 Identities=13% Similarity=0.069 Sum_probs=201.7
Q ss_pred cchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH--HHHHHHh
Q 040319 267 DIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTL--TSVVNAC 344 (812)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~ 344 (812)
|...+......+-+.|..+.|++.|......-+..|.+-+....-..+.+.+.. .. .|...|...+ -.+..++
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~-~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LV-VGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HH-hcCcccchHHHHHHHHHHH
Confidence 333334444455566777777777776655445555544332222222221111 11 1111111111 1223334
Q ss_pred ccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHH
Q 040319 345 GLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILL 424 (812)
Q Consensus 345 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 424 (812)
-.....+.+.+-.......|++.+...-+-...++-...+++.|+.+|+++..+.|
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP------------------------ 293 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP------------------------ 293 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC------------------------
Confidence 44445555555555555566655555555555555555566666666665542221
Q ss_pred HHHhcccCCCCC-ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--
Q 040319 425 FHQSQSEATVVP-DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-- 501 (812)
Q Consensus 425 ~~~m~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-- 501 (812)
.+. |.-||+.+|-.-.....+.---+....+ ..+. +.+...+.+.|+-.++.++|...|+...+
T Consensus 294 ---------YRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--dKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN 360 (559)
T KOG1155|consen 294 ---------YRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--DKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN 360 (559)
T ss_pred ---------CcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--ccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC
Confidence 111 1123333332211111110000000011 1122 23444566667777777777777776655
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-Ccc
Q 040319 502 -HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSE 578 (812)
Q Consensus 502 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 578 (812)
.-...|+-|..-|....+...|++-++..++ +.| |...|..|..+|.- .+...-|+-+|++..+ ++| |..
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYei--m~Mh~YaLyYfqkA~~---~kPnDsR 433 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEI--MKMHFYALYYFQKALE---LKPNDSR 433 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHH--hcchHHHHHHHHHHHh---cCCCchH
Confidence 3346677777778888888888888888777 555 44777777778777 7777778888877765 455 467
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc-------cCCCCCchHHHH
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA-------MEPQDPATYILV 649 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l 649 (812)
.|.+|.++|.+.++.+||+.-|+... ...+...+..|...+...++.++|.+.+++-++ .+|....+..-|
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL 513 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL 513 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 78888888888888888888877754 233456777788888888888888888888776 344444555667
Q ss_pred HhhhhhCCCcchHHHHHHHH
Q 040319 650 SNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m 669 (812)
++-+.+.++|++|...-...
T Consensus 514 A~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 514 AEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHhhcchHHHHHHHHHH
Confidence 88888888888888765543
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.2e-08 Score=102.78 Aligned_cols=373 Identities=13% Similarity=0.082 Sum_probs=230.4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHH-HHHHHHHhC
Q 040319 234 GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYN-ALLAGYCKN 312 (812)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~-~li~~~~~~ 312 (812)
..|...+-..-..+-+.|....|+..|......-+..|.+-+....-..+.+.+..+....+..+...-. -+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 4444444334445556677777777666654433333333332222223333333343333332222111 233566666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCC--CchhHHHHHHHHHHhcCC--H-HH
Q 040319 313 GKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLG--SNDCIEAALLDMLTRCGR--M-AD 387 (812)
Q Consensus 313 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~Li~~y~~~g~--~-~~ 387 (812)
.+.++++.=.......|+.-+...-+....+.-...++++|..+|+.+.+...- .|..+|+.++ |.+..+ + --
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~L 318 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHH
Confidence 788888888888888887666665555555667778999999999999987431 2455555544 333222 1 12
Q ss_pred HHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh
Q 040319 388 AEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKT 467 (812)
Q Consensus 388 A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 467 (812)
|..+++-=. -+ +.|...+.+-|.-.++.+.|+..|++..+ +.|.
T Consensus 319 A~~v~~idK-yR--~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~------------------------------ 362 (559)
T KOG1155|consen 319 AQNVSNIDK-YR--PETCCIIANYYSLRSEHEKAVMYFKRALK---LNPK------------------------------ 362 (559)
T ss_pred HHHHHHhcc-CC--ccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcc------------------------------
Confidence 333332111 12 34555555556666666666666666655 3332
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHH
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFV 543 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~ 543 (812)
....|+.+.+-|....+...|.+-++...+ .|-..|..|..+|...+.+.-|+-.|++..+ .+|+. ..+.
T Consensus 363 ----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~ 436 (559)
T KOG1155|consen 363 ----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWV 436 (559)
T ss_pred ----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHH
Confidence 344566677777777777788777776554 6778888888888888888888888888888 77765 6777
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--------CCCCHHHHHH-
Q 040319 544 LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--------FQPKVSVWRA- 614 (812)
Q Consensus 544 ~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--------~~p~~~~~~~- 614 (812)
+|..+|.+ .++.++|++.|..... .| ..+...|..+.+++-+-++.++|-..+++-. ..|...--..
T Consensus 437 aLG~CY~k--l~~~~eAiKCykrai~-~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f 512 (559)
T KOG1155|consen 437 ALGECYEK--LNRLEEAIKCYKRAIL-LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF 512 (559)
T ss_pred HHHHHHHH--hccHHHHHHHHHHHHh-cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 78888888 8888888888887765 11 2245778888888888888888888776532 2332222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
|..-+.+.++.++|...+.+.+.-+| ..+||..++++++.
T Consensus 513 LA~~f~k~~~~~~As~Ya~~~~~~~~-----------------e~eeak~LlReir~ 552 (559)
T KOG1155|consen 513 LAEYFKKMKDFDEASYYATLVLKGET-----------------ECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHhhcchHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHHHH
Confidence 33446678899988877766665543 34677777766654
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1.1e-08 Score=102.17 Aligned_cols=271 Identities=14% Similarity=0.105 Sum_probs=190.3
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCcee---eeHHH-HHHHHHcC-ChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCcc
Q 040319 378 MLTRCGRMADAEKMFYRWPTDRDDSI---IWTSM-ICGYARSG-KPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLG 452 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~~~~~~---~~~~l-i~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~ 452 (812)
-|.+.|+++.|.++++-.. .+++-+ .-|.| .--|.+.| ++..|.+.-+....-... +......--...-..|
T Consensus 428 ~~lk~~d~~~aieilkv~~-~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry--n~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFE-KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY--NAAALTNKGNIAFANG 504 (840)
T ss_pred HHHhccCHHHHHHHHHHHH-hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc--CHHHhhcCCceeeecC
Confidence 4678889888888777665 433111 12222 22233333 455666655544331111 1111111111223457
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSS 529 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 529 (812)
+++.|...+...+...-.-....|| +.-.+-+.|++++|+..|-++.. .++.....+.+.|-...+...|++++-+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 8888988888887644322222332 23356788999999999976643 6777778888999999999999999988
Q ss_pred HHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC
Q 040319 530 MEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP 607 (812)
Q Consensus 530 m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p 607 (812)
... +-|+. ....-|...|-+ .|+-.+|.+++-.--+ -++-++++..-|..-|....-+++|+..|++.. +.|
T Consensus 584 ~~s--lip~dp~ilskl~dlydq--egdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 584 ANS--LIPNDPAILSKLADLYDQ--EGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred hcc--cCCCCHHHHHHHHHHhhc--ccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 776 66765 556667778888 8999999887654322 134468888888888888889999999999965 899
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 608 KVSVWRALLDSCR-IRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 608 ~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
+..-|..++..|. +.||+.+|...++..-..-|+|......|..+....|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999998865 57999999999999999999999999999999888885
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.29 E-value=7e-10 Score=119.19 Aligned_cols=227 Identities=11% Similarity=-0.002 Sum_probs=154.3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccch
Q 040319 376 LDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFH 454 (812)
Q Consensus 376 i~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~ 454 (812)
...+...|+.+.|...++++... +.+......+...|.+.|++++|++++..+.+ .+..++. ....+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~-~~~~l~--------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVGDEE-HRAMLE--------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCCCHH-HHHHHH---------
Confidence 45667778888888877776533 33455666777788888888888888888776 3322211 111000
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040319 455 EMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSME 531 (812)
Q Consensus 455 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 531 (812)
...+..++....+..+.+...++++.++. .++.....+..++...|+.++|.+++++..
T Consensus 229 ------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 229 ------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred ------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01122223333333455566666666654 466777888888888999999999998888
Q ss_pred HCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH
Q 040319 532 KASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVS 610 (812)
Q Consensus 532 ~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~ 610 (812)
+ ..||.... ++.+... .++.+++.+..+...+.+ +-+...+.++..++.+.|++++|.+.|++.. ..|+..
T Consensus 291 ~--~~~~~~l~--~l~~~l~--~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 291 K--RQYDERLV--LLIPRLK--TNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred h--cCCCHHHH--HHHhhcc--CCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 7 45554211 2222233 688888888888887632 2335678888899999999999999998865 778888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
.+..|...+...|+.++|...+++.+.+.
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88888888999999999999999988764
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.27 E-value=8.7e-10 Score=118.44 Aligned_cols=275 Identities=10% Similarity=0.089 Sum_probs=200.2
Q ss_pred cCCHHHHHHHHhcCCCCCCc-eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHH--HHHHHhcCccchHHHH
Q 040319 382 CGRMADAEKMFYRWPTDRDD-SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALT--SVLGVCGTLGFHEMGK 458 (812)
Q Consensus 382 ~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~ 458 (812)
.|+++.|++.+...+...++ ...|-.......+.|+++.|.+.|.++.+ ..|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58888888888776522221 22232223344788999999999998876 566654333 2245667788999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCCh-----------hHHHHHHHHHHhcCChHHHHHHH
Q 040319 459 QIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDI-----------VSWNGLIAGHLLHRQGDEALAVW 527 (812)
Q Consensus 459 ~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~ 527 (812)
..++.+.+.. +.++.+...+...|.+.|++++|..++..+.+... ..|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9998888765 44678888999999999999999999888775211 13344444444455566677777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CC
Q 040319 528 SSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQ 606 (812)
Q Consensus 528 ~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~ 606 (812)
+++-+. .+.+......+..++.. .|+.++|.+.++...+ ..|+.... ++......|+.+++++.+++.. ..
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~--~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIE--CDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 776442 33355667777778888 9999999999988875 24444222 2233335599999999998865 55
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 607 P-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 607 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
| |+.....+...|...++.++|+..++++++.+|++ ..+..|+.++.+.|+.++|.+.+++-
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6 45567788888999999999999999999999984 56789999999999999999998865
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.27 E-value=1.9e-11 Score=125.44 Aligned_cols=254 Identities=15% Similarity=0.091 Sum_probs=76.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHH-HhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCH
Q 040319 307 AGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVN-ACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRM 385 (812)
Q Consensus 307 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 385 (812)
..+.+.|++++|++++++.......|+...|-.++. .+-..++.+.+.+.++.+...+.. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 334444555555555533333222233333322222 222234444444444444433222 33334444444 466667
Q ss_pred HHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHH
Q 040319 386 ADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYAL 465 (812)
Q Consensus 386 ~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 465 (812)
++|.+++...-...++...+..++..+.+.++++++.+++.+........++...|..+...+.+.|+.+.|...+..++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776665543222335556666777777777777777777765422233444455555555666666666666666666
Q ss_pred HhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHH
Q 040319 466 KTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP---SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AIT 541 (812)
Q Consensus 466 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t 541 (812)
+.. +.|..+.+.++..+...|+.+++..++.... ..|...|..+..+|...|++++|+..|++..+ ..|+ ...
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~ 250 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLW 250 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccccccc
Confidence 543 2245555666666666666666555554432 24455566666666666666666666666665 4453 344
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHh
Q 040319 542 FVLIISAYRYTNLNLVDSCRKLFLSM 567 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~~~~a~~~~~~m 567 (812)
...+..++.. .|..++|.++.+..
T Consensus 251 ~~~~a~~l~~--~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 251 LLAYADALEQ--AGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccc--cccccccccccccc
Confidence 4455555555 66666666655544
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.9e-11 Score=87.54 Aligned_cols=50 Identities=34% Similarity=0.543 Sum_probs=48.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY 551 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 551 (812)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=2.9e-08 Score=100.02 Aligned_cols=415 Identities=12% Similarity=0.095 Sum_probs=278.1
Q ss_pred ChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhh
Q 040319 283 YVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGF 359 (812)
Q Consensus 283 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 359 (812)
++..|..+|++... +++..|---+..=.++.....|..+++..+..=...|...|.-+ -.=-..|++..+++++..
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~-ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI-YMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH-HHHHHhcccHHHHHHHHH
Confidence 44445556655543 45555666666666667777777777766654444444433321 122345777777777776
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh
Q 040319 360 VMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI 439 (812)
Q Consensus 360 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 439 (812)
-.+ ..|+...+.+.|+.-.+...++.|+.++++..-..|++.+|--...-=.++|+...|..+|....+ .-.|..
T Consensus 167 W~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie---~~~~d~ 241 (677)
T KOG1915|consen 167 WME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE---FLGDDE 241 (677)
T ss_pred HHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---HhhhHH
Confidence 654 478888899999998999999999999988664567688888887777888998888888887765 223333
Q ss_pred hHHHHHHHh----cCccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHhhhcCCHHHHHHH--------HccCCC---CC
Q 040319 440 ALTSVLGVC----GTLGFHEMGKQIHSYALKTGFSS-DLGVANSMVSMYFKCCNMSNAIKA--------FNKMPS---HD 503 (812)
Q Consensus 440 t~~~ll~a~----~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~--------f~~~~~---~~ 503 (812)
.-..+..++ .....++.|.-++..++..-... ....|..+...=-+-|+....... ++.+.. -|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 333444444 34567888888888888743221 244555555544455654433322 222222 45
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HH---HHHH--HHHh-cCCCCchHHHHHHHHHHhhhhcCccC
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--IT---FVLI--ISAY-RYTNLNLVDSCRKLFLSMKTIYNIEP 575 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t---~~~l--l~a~-~~~~~g~~~~a~~~~~~m~~~~~~~p 575 (812)
-.+|--.+..-...|+.+...++|++.+.. ++|-. .. |..| =-+| ......+++.+.++|+...+ +.|
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lIP 397 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LIP 397 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcC
Confidence 577877788778889999999999999874 56632 11 1111 1121 11126788899999998876 445
Q ss_pred -CcchHHHHHHH----HhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 576 -TSEHYASLVSV----LGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 576 -~~~~y~~li~~----l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
...+++-+--+ ..|+.++..|.+++-... .-|...++...+..-.+.++++....++++.++..|.|..++...
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 45566555444 457889999999987754 678888999999998999999999999999999999999999999
Q ss_pred HhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHH
Q 040319 650 SNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEI 711 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 711 (812)
+.+-...|++|.|..++....++.....|..-|- ....|-.....+..+..+|..|.+
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHH
Confidence 9999999999999999998876655444544441 001333333445556666665543
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=5.3e-10 Score=111.50 Aligned_cols=197 Identities=9% Similarity=0.004 Sum_probs=164.5
Q ss_pred CchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLII 546 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll 546 (812)
.....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|.+.+++..+ ..|+. ..+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHH
Confidence 3456777888999999999999999987654 3467888899999999999999999999998 44543 5566666
Q ss_pred HHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 040319 547 SAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN 624 (812)
Q Consensus 547 ~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~ 624 (812)
..+.. .|++++|.+.|+...+..........+..+..++.+.|++++|.+.+++.. ..| +...|..+...+...|+
T Consensus 107 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 107 TFLCQ--QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHH--cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 77777 999999999999988632222345678888999999999999999998854 445 46678888888999999
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 625 TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+.|...++++++..|.++..+..++.++...|++++|.++.+.+..
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999898888999999999999999999999888754
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=2e-06 Score=90.45 Aligned_cols=128 Identities=11% Similarity=0.142 Sum_probs=84.9
Q ss_pred hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC----CCh-hHHHHHHHHH
Q 040319 440 ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS----HDI-VSWNGLIAGH 514 (812)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~-~~~~~li~~~ 514 (812)
.|+..++.--..|-++..+.+++.++...+.....+-| ..-.+-...-++++.+++++-.. |++ ..||+-+.-+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 44555555566678888999999998877643332222 22234455668899999987554 665 4788776655
Q ss_pred Hh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 515 LL---HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 515 ~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
.+ ....+.|..+|++.++ |..|...-+..|+-|-...+-|....|.+++++...
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 43 2357899999999999 677776544444443222236888888888887654
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.23 E-value=6.2e-09 Score=112.57 Aligned_cols=294 Identities=13% Similarity=0.012 Sum_probs=144.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHhHH-HHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHH
Q 040319 310 CKNGKAMEALGLFVKLLEEGLVLTEFTL-TSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADA 388 (812)
Q Consensus 310 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 388 (812)
...|+++.|.+.+.+..+. .|+...+ ...-.+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4568888888888776654 3443222 222334445566666666665554433222222333334555555555555
Q ss_pred HHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh
Q 040319 389 EKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKT 467 (812)
Q Consensus 389 ~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 467 (812)
...++.+... +.+...+..+...+.+.|++++|.+++....+ .+..+. ..+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~~~-~~~~~l~~--------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLFDD-EEFADLEQ--------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCCH-HHHHHHHH---------------------
Confidence 5555554422 22333444555555555555555555555554 221111 10100000
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFV- 543 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~- 543 (812)
..+..+++.-......+......+..++ .++..+..+...+...|+.++|.+++++..+ ..||.....
T Consensus 230 ------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~ 301 (409)
T TIGR00540 230 ------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISL 301 (409)
T ss_pred ------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchh
Confidence 0111111111122233444455555543 4777888888889999999999999999888 566664210
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHH
Q 040319 544 LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINN--M-PFQPKVSVWRALLDSCR 620 (812)
Q Consensus 544 ~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~ 620 (812)
.++..+.....++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+. . ...||...+..+...+.
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 12222221114556666666666554221111113344555555555555555555552 1 23455444444444455
Q ss_pred hcCCHHHHHHHHHHHH
Q 040319 621 IRLNTTIGKRVAKHIL 636 (812)
Q Consensus 621 ~~~~~~~a~~~~~~~~ 636 (812)
..|+.+.|.+++++.+
T Consensus 382 ~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSL 397 (409)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555554443
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.22 E-value=2e-09 Score=116.28 Aligned_cols=291 Identities=9% Similarity=-0.022 Sum_probs=194.9
Q ss_pred HHHHHHH--hhCChhHHHHHhccCCC--CCc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccc
Q 040319 273 EIIIAYM--EFGYVDLAVEIFDKMPE--KNS-VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLI 347 (812)
Q Consensus 273 ~li~~~~--~~g~~~~A~~~f~~m~~--~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 347 (812)
.+..++. ..|+++.|.+.+.+..+ |+. ..+-.....+.+.|+++.|.+.|.+..+....+....-..........
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 3444444 57999999999988765 332 223344567888999999999999987654222222333345667778
Q ss_pred hhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-ceeeeHHH----HHHHHHcCChhhHH
Q 040319 348 MEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-DSIIWTSM----ICGYARSGKPEHAI 422 (812)
Q Consensus 348 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~l----i~~~~~~g~~~~A~ 422 (812)
++.+.|...++.+.+.. +.+..+...+...|.+.|++++|.+.+..+.+... +...+..+ ..++...+..+++.
T Consensus 167 ~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 167 NELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999886 44667888999999999999999999988873211 11111111 01111111111112
Q ss_pred HHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-
Q 040319 423 LLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS- 501 (812)
Q Consensus 423 ~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~- 501 (812)
+.+..+.. . .|+ ..+.++..+..+...+...|+.+.|.+++++..+
T Consensus 246 ~~L~~~~~-~--~p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 246 DGLLNWWK-N--QPR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHH-H--CCH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 22222221 0 000 0123667777788888888888888888887765
Q ss_pred -CChhH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HH-HHHHHHhcCCCCchHHHHHHHHHHhhhhcCcc
Q 040319 502 -HDIVS---WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI--TF-VLIISAYRYTNLNLVDSCRKLFLSMKTIYNIE 574 (812)
Q Consensus 502 -~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~-~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~ 574 (812)
||... +..........++.+.+++.+++..+ ..|+.. .+ .++...|.+ .|++++|.++|+.... ....
T Consensus 293 ~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~--~~~~~~A~~~le~a~a-~~~~ 367 (409)
T TIGR00540 293 LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMK--HGEFIEAADAFKNVAA-CKEQ 367 (409)
T ss_pred CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHH--cccHHHHHHHHHHhHH-hhcC
Confidence 44332 12222233445778889999998888 678776 43 355556777 8999999999995332 3457
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 575 PTSEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 575 p~~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
|+...+..+..++.+.|+.++|.+++++
T Consensus 368 p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 368 LDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9988899999999999999999999887
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=4e-11 Score=85.79 Aligned_cols=50 Identities=36% Similarity=0.707 Sum_probs=48.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 040319 62 PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIR 111 (812)
Q Consensus 62 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 111 (812)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.9e-08 Score=102.69 Aligned_cols=194 Identities=15% Similarity=0.097 Sum_probs=144.5
Q ss_pred CCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 040319 469 FSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSH---DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVL 544 (812)
Q Consensus 469 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ 544 (812)
.+..+.+|-++.-.|.-.|+..+|++.|.+...- -...|-.....|+-.|..+.|+..+...-+ .-|-. ..+.-
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LY 385 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLY 385 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHH
Confidence 3445666777777777778888888888765542 235788888888888888888888877766 33332 33444
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--------CCC-CHHHHHH
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP--------FQP-KVSVWRA 614 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ 614 (812)
+..-|.. .+..+.|.++|.+... +-|+ +..++-+.-+.-..+.+.+|...|+... -.+ -.++|+.
T Consensus 386 lgmey~~--t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 386 LGMEYMR--TNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred HHHHHHH--hccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 4445666 7788888888877754 5554 5666666666667778888888777643 111 3456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
|..+|++.+..++|+..+++++.+.|+++.+|..++-+|...|+++.|.+.+.+.
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999998876
No 56
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=1.1e-06 Score=93.13 Aligned_cols=529 Identities=13% Similarity=0.081 Sum_probs=302.3
Q ss_pred ccCChhhHHHHHhcCCC-CChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 040319 45 KLGHVADAYKIFYGLSS-PNVV-SFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIH 122 (812)
Q Consensus 45 ~~g~~~~A~~~f~~~~~-~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 122 (812)
..|+++.|...++.... |+.. .|-.+...-...|+.--|.++ ++..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaerc----------------------faai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERC----------------------FAAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHH----------------------HHHHHHHHHHHHHH
Confidence 34566666666665442 4432 344444444444544444433 34445556666655
Q ss_pred HHHH-------Hh-CCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHh
Q 040319 123 ALIV-------KM-GCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKR 194 (812)
Q Consensus 123 ~~~~-------~~-g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 194 (812)
+... +. |-..+.+-..+++.+..+ .+.+|..+|-+-. ++ ...|..|-....+++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~k---kfk~ae~ifleqn--~t---e~aigmy~~lhkwde~i~lae~~-- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILEK---KFKEAEMIFLEQN--AT---EEAIGMYQELHKWDEAIALAEAK-- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh---hhhHHHHHHHhcc--cH---HHHHHHHHHHHhHHHHHHHHHhc--
Confidence 5432 11 223344555666666665 7788888775421 11 23445555566677777765433
Q ss_pred cCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhc--CCCCcchhHH
Q 040319 195 DNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLER--MPVMDIITLT 272 (812)
Q Consensus 195 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~~~~~~~~ 272 (812)
|.+.-...-.+-++++...|+-+.|-++- ..+-. .-+.|..|.+.|.+..|.+.... ....|.....
T Consensus 584 --~~p~~eklk~sy~q~l~dt~qd~ka~elk--------~sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~ 652 (1636)
T KOG3616|consen 584 --GHPALEKLKRSYLQALMDTGQDEKAAELK--------ESDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILE 652 (1636)
T ss_pred --CChHHHHHHHHHHHHHHhcCchhhhhhhc--------cccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHH
Confidence 22211122234455555555555543331 11111 23567889999999888775432 2345666777
Q ss_pred HHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHHhccchhhh
Q 040319 273 EIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSV-VNACGLIMEAK 351 (812)
Q Consensus 273 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~ 351 (812)
.+..++.+..-+++|-.+|+++..+|- -+..|-+-.-+.+|+++-+-.-.. ..+++..- -.-+...|+++
T Consensus 653 ~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfafp~----evv~lee~wg~hl~~~~q~d 723 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFPE----EVVKLEEAWGDHLEQIGQLD 723 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCcH----HHhhHHHHHhHHHHHHHhHH
Confidence 788888888888999999988865432 222232222344444443322110 00110000 00011122222
Q ss_pred hHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-ceeeeHHHHHHHHHcCChhhHHHHHHHhcc
Q 040319 352 LSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-DSIIWTSMICGYARSGKPEHAILLFHQSQS 430 (812)
Q Consensus 352 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (812)
.+..-+-+.. ..-.-+.+-.....+.+|..+++.+. .+. -.--|..+...|+..|+++.|.++|.+.-.
T Consensus 724 aainhfiea~---------~~~kaieaai~akew~kai~ildniq-dqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~ 793 (1636)
T KOG3616|consen 724 AAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQ-DQKTASGYYGEIADHYANKGDFEIAEELFTEADL 793 (1636)
T ss_pred HHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhh-hhccccccchHHHHHhccchhHHHHHHHHHhcch
Confidence 2222111110 01112334445667777888887777 443 122355666788888888888888865322
Q ss_pred cCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHH
Q 040319 431 EATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGL 510 (812)
Q Consensus 431 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l 510 (812)
++-.+..|.+.|.++.|.++-... .|.+.....|-+-..-+-+.|++.+|.+++-.+..|+. -
T Consensus 794 ----------~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----a 856 (1636)
T KOG3616|consen 794 ----------FKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----A 856 (1636)
T ss_pred ----------hHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----H
Confidence 344566777888877776654433 23344555566666667778888888888888877775 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHh
Q 040319 511 IAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLG 588 (812)
Q Consensus 511 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~ 588 (812)
|..|-++|..+..+++.++ ..||. .|...+..-+.. .|+++.|.+.|-+... |.+-+++|-
T Consensus 857 iqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~--~g~lkaae~~flea~d----------~kaavnmyk 919 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKELEA--EGDLKAAEEHFLEAGD----------FKAAVNMYK 919 (1636)
T ss_pred HHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHHHh--ccChhHHHHHHHhhhh----------HHHHHHHhh
Confidence 6678888888888877765 45554 455555555666 8999999988865543 677889999
Q ss_pred hcCChHHHHHHHHhCC---C-CCCHHHHHHHH------HHHHhcCCHHHHHHH------HHHHHcc-----CCCCCchHH
Q 040319 589 YWGFLEEAEETINNMP---F-QPKVSVWRALL------DSCRIRLNTTIGKRV------AKHILAM-----EPQDPATYI 647 (812)
Q Consensus 589 ~~g~~~~A~~~~~~m~---~-~p~~~~~~~ll------~~~~~~~~~~~a~~~------~~~~~~~-----~p~~~~~~~ 647 (812)
..+.+++|..+-+.-. . +.-...|.--+ ....++|.++.|... ++-++++ ...-+..+.
T Consensus 920 ~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhl 999 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHL 999 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchh
Confidence 9999999999887633 1 11133443322 234467777666553 3333332 234567888
Q ss_pred HHHhhhhhCCCcchHHHHHHHH
Q 040319 648 LVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 648 ~l~~~y~~~g~~~~a~~~~~~m 669 (812)
.++.-+-..|++++|.+-+-+.
T Consensus 1000 k~a~~ledegk~edaskhyvea 1021 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEA 1021 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHH
Confidence 8999999999999997655443
No 57
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.4e-05 Score=88.15 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=123.5
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040319 487 CNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLS 566 (812)
Q Consensus 487 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~ 566 (812)
+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. -|...|..++.++++ .|.+++-.+++..
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~--~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR--TGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 4445555554444433 56999999999999999998877542 355789999999999 9999999999987
Q ss_pred hhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 567 MKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 567 m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
.++ ..-+|.+ =+.||-+|++.+++.|-++++. .||..-...+.+-|...|.++.|+-++.. .+.|
T Consensus 1159 aRk-k~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~ 1223 (1666)
T KOG0985|consen 1159 ARK-KVREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNF 1223 (1666)
T ss_pred HHH-hhcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhH
Confidence 765 4444544 4689999999999999888874 57888888889999999999988877753 4678
Q ss_pred HHHHhhhhhCCCcchHHHHHHHH
Q 040319 647 ILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 647 ~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
..|+..+...|.+..|..--++.
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888888899988887765544
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.9e-07 Score=92.80 Aligned_cols=307 Identities=13% Similarity=0.030 Sum_probs=212.0
Q ss_pred CCCCHhHHHHHHHHhccc--hhhhhHHHHHhhHHH-hcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-ceeee
Q 040319 330 LVLTEFTLTSVVNACGLI--MEAKLSEQIHGFVMK-FGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-DSIIW 405 (812)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~ 405 (812)
+.|...+...-+.+++.. ++-..+.+.+-.+.+ .-++.|+....++.+.|...|+.++|...|++...-.| ++...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 445555555555554433 333334444444433 56777889999999999999999999999988662222 22223
Q ss_pred HHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh
Q 040319 406 TSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFK 485 (812)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 485 (812)
....-.+.+.|+++..-.+...... . .+-...-|-.-....-...+++.|..+-+..++..- .+...+-.-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~-~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFA-K-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHh-h-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 3333445678888887777666654 1 111111122222222345667777777777666431 233333333456677
Q ss_pred cCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH-HHhcCCCCchHHHH
Q 040319 486 CCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLII-SAYRYTNLNLVDSC 560 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll-~a~~~~~~g~~~~a 560 (812)
.|+.++|.-.|+.... .+..+|..|+..|...|++.+|+-+-++..+ .-|+ ..+...+. ..|... ...-++|
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~d-p~~rEKA 423 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPD-PRMREKA 423 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccC-chhHHHH
Confidence 8999999999987654 5789999999999999999999998888776 3444 45555442 334321 3446789
Q ss_pred HHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 040319 561 RKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAM 638 (812)
Q Consensus 561 ~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 638 (812)
.+++++-.+ +.|+ ...-+.+..++.+.|+.++++.++++.. ..||....+.|....+..+.+++|...+..++.+
T Consensus 424 Kkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999887765 6677 5667788899999999999999999855 7899999999999999999999999999999999
Q ss_pred CCCCCch
Q 040319 639 EPQDPAT 645 (812)
Q Consensus 639 ~p~~~~~ 645 (812)
+|+|..+
T Consensus 501 dP~~~~s 507 (564)
T KOG1174|consen 501 DPKSKRT 507 (564)
T ss_pred CccchHH
Confidence 9986554
No 59
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=4.5e-07 Score=94.50 Aligned_cols=434 Identities=11% Similarity=0.059 Sum_probs=236.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHH--hhCChhHHHHH
Q 040319 213 TGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYM--EFGYVDLAVEI 290 (812)
Q Consensus 213 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~ 290 (812)
...+++++|.+....++..+ +.|...+..=+-+..+.+++++|..+.+.-........-.+=.+|| +.+..|+|+..
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred ccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 34444444444444444433 3333334444444555566666665444433222111111344555 46777777778
Q ss_pred hccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhccchhhhhHHHHHh-hHHHhcCCC-
Q 040319 291 FDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEF-TLTSVVNACGLIMEAKLSEQIHG-FVMKFGLGS- 367 (812)
Q Consensus 291 f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~-~~~~~g~~~- 367 (812)
++.....|......-.+.+.+.|++++|+.+|+.+.+.+..--.. .-..++.+-+ ..-. .+......|
T Consensus 102 ~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 102 LKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------ALQVQLLQSVPEVPE 172 (652)
T ss_pred HhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---------hhhHHHHHhccCCCc
Confidence 775555554455555667788888888888888887765432221 1122221111 1111 111112222
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCC-c---eee-----eHHHHHHHHHcCChhhHHHHHHHhc
Q 040319 368 -NDCIEAALLDMLTRCGRMADAEKMFYRW--------PTDRD-D---SII-----WTSMICGYARSGKPEHAILLFHQSQ 429 (812)
Q Consensus 368 -~~~~~~~Li~~y~~~g~~~~A~~~f~~~--------~~~~~-~---~~~-----~~~li~~~~~~g~~~~A~~~~~~m~ 429 (812)
+-..+-.....+...|++.+|+++++.. . +.+ + ... ---|.-.+...|+..+|..++....
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~-~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLE-DEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc-ccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1112222344567788999998888765 2 111 0 111 1123445667899999999998887
Q ss_pred ccCCCCCChhhHHHH---HHHhcCccchHHH--------------HHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHH
Q 040319 430 SEATVVPDEIALTSV---LGVCGTLGFHEMG--------------KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNA 492 (812)
Q Consensus 430 ~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--------------~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 492 (812)
. . ..+|....... |.+...-.++..+ ......+.+ .-......-++|+.+|. +..+.+
T Consensus 252 ~-~-~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~t--nk~~q~ 326 (652)
T KOG2376|consen 252 K-R-NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALFT--NKMDQV 326 (652)
T ss_pred H-h-cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh--hhHHHH
Confidence 6 2 34444322211 1222222222111 111111111 00112233345666665 455667
Q ss_pred HHHHccCCC--CChhHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHH----
Q 040319 493 IKAFNKMPS--HDIVSWNGLIAGHLL-HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFL---- 565 (812)
Q Consensus 493 ~~~f~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~---- 565 (812)
+++-...+. |....=+-+..++.. .....+|.+++...-+ -.|+......|+.+-.+...|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 777666665 443333333333332 2357888888888877 5677744444444433333899999999998
Q ss_pred ----HhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 040319 566 ----SMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNM--------PFQPK-VSVWRALLDSCRIRLNTTIGKRVA 632 (812)
Q Consensus 566 ----~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 632 (812)
.+.+ +.-.+.+-..++.++.+.+.-+-|-+++.+. +-.+. ..+|.-+...-.++|+.+.|...+
T Consensus 405 ~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 4443 2334556677888888888766555555442 22332 234444444455789999999999
Q ss_pred HHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 633 KHILAMEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 633 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
+++++..|.|......++-.|+... .+.|..+-+.
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 9999999999999999999998764 4555555443
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.1e-07 Score=96.52 Aligned_cols=278 Identities=17% Similarity=0.074 Sum_probs=156.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCc---chhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHH
Q 040319 236 NLSVNNALIGFYTKCGRVKDVVALLERMPVMD---IITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGY 309 (812)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~ 309 (812)
+..+.-.-.+-+...+++.+..++++...+.| ...+..-|.++.+.|+..+-..+=.++.+ ...++|-++.--|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 33333344444444455555555544443222 22233334444444444333333333322 2334555555555
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCC-chhHHHHHHHHHHhcCCHHH
Q 040319 310 CKNGKAMEALGLFVKLLEEGLVLT-EFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGS-NDCIEAALLDMLTRCGRMAD 387 (812)
Q Consensus 310 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~ 387 (812)
...|...+|.+.|.+...-. |. ...|...-.+++..+.-+++...+..+-+.=... -+..| +.--|.+.++++-
T Consensus 323 l~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~kL 398 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNLKL 398 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccHHH
Confidence 55555555555555443211 11 1123333334444444444444444333321110 01111 1223667788888
Q ss_pred HHHHHhcCCC-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHH
Q 040319 388 AEKMFYRWPT-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALK 466 (812)
Q Consensus 388 A~~~f~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 466 (812)
|.+.|.+... .+.|+...+-+.-...+.+.+.+|..+|+.... ..++. . +
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~---~ik~~----------------------~----~ 449 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALE---VIKSV----------------------L----N 449 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHH---Hhhhc----------------------c----c
Confidence 8888876542 245566677766666667788888888876553 00000 0 0
Q ss_pred hCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040319 467 TGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP---SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFV 543 (812)
Q Consensus 467 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 543 (812)
. ...-..+++.|...|.|++.+++|...|+... ..|..++.++.-.|...|+++.|++.|.+.+. +.||..+..
T Consensus 450 e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~ 526 (611)
T KOG1173|consen 450 E-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFIS 526 (611)
T ss_pred c-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHH
Confidence 0 00123456788899999999999999998754 47888999999999999999999999999988 999998887
Q ss_pred HHHHHh
Q 040319 544 LIISAY 549 (812)
Q Consensus 544 ~ll~a~ 549 (812)
.+|..+
T Consensus 527 ~lL~~a 532 (611)
T KOG1173|consen 527 ELLKLA 532 (611)
T ss_pred HHHHHH
Confidence 777644
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=2.6e-08 Score=106.42 Aligned_cols=230 Identities=16% Similarity=0.172 Sum_probs=170.1
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHhhhcCCHHHHHHHHccCCC----------
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKT-----GF-SSDLG-VANSMVSMYFKCCNMSNAIKAFNKMPS---------- 501 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~Li~~y~k~g~~~~A~~~f~~~~~---------- 501 (812)
.|...+...|...|+++.|..++...++. |. .|.+. ..+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35556778888888888888888877754 21 12222 234477889999999999999887753
Q ss_pred CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCC-CH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCc
Q 040319 502 HD-IVSWNGLIAGHLLHRQGDEALAVWSSMEK-----ASIKP-DA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNI 573 (812)
Q Consensus 502 ~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p-d~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~ 573 (812)
|. ..+++.|..+|...|++++|...+++..+ .|..+ .. .-++.+...|.. .+.+++|..+++...+.+.-
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~--~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS--MNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHh
Confidence 22 35778888899999999988888877654 22222 33 235556667888 89999999999877664442
Q ss_pred cC--C----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 574 EP--T----SEHYASLVSVLGYWGFLEEAEETINNMP---------FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 574 ~p--~----~~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
.| + ..+|+.|..+|-..|+++||++++++.. ..+. ....+.|..+|...++.+.|.+.++....
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 22 2 4679999999999999999999998853 1232 45677788889888999988888877765
Q ss_pred c----CCC---CCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 638 M----EPQ---DPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 638 ~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+ .|+ -..+|..|+-+|.+.|++++|.++-+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 344 45568889999999999999999987763
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1e-06 Score=85.82 Aligned_cols=215 Identities=14% Similarity=0.135 Sum_probs=123.3
Q ss_pred HHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHh-----cCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 408 MICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVC-----GTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482 (812)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 482 (812)
++--|.+.++..+|..+.++..- ..|-+.....+..+- .....+..|++.+..+-.++.+-|+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI-------- 359 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI-------- 359 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc--------
Confidence 33446778888888887766543 445444444433221 11223444555554444444333322
Q ss_pred hhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHH
Q 040319 483 YFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRK 562 (812)
Q Consensus 483 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~ 562 (812)
..-.+|.+.+.-..++++.+-.+.....-=..-|...| .+..|... .|.+.+|.+
T Consensus 360 ----------------------pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a--tgny~eaEe 414 (557)
T KOG3785|consen 360 ----------------------PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA--TGNYVEAEE 414 (557)
T ss_pred ----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH--hcChHHHHH
Confidence 22333444444455555665555555542122222222 34445555 678888888
Q ss_pred HHHHhhhhcCccCCcchH-HHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHccCC
Q 040319 563 LFLSMKTIYNIEPTSEHY-ASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLD-SCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 563 ~~~~m~~~~~~~p~~~~y-~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
+|-.+.. ..++ +..+| +.|..+|.++|..+-|++++-++..+.+..+...++. -|.+.+.+=-|-+++..+-.++|
T Consensus 415 lf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 415 LFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 8766653 2222 23344 4456788889999999999888875556666656655 49999999999999999888998
Q ss_pred CCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 641 QDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 641 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
. |..| .|+-....-++..+-
T Consensus 493 ~-pEnW---------eGKRGACaG~f~~l~ 512 (557)
T KOG3785|consen 493 T-PENW---------EGKRGACAGLFRQLA 512 (557)
T ss_pred C-cccc---------CCccchHHHHHHHHH
Confidence 6 4433 234344455555553
No 63
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=6.1e-05 Score=83.30 Aligned_cols=605 Identities=12% Similarity=0.104 Sum_probs=319.8
Q ss_pred HHHHHHccCChhhHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 040319 39 LISAYLKLGHVADAYKIFYGLSS---PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLEL 115 (812)
Q Consensus 39 li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 115 (812)
-.+.+..+|++++|-++--..|+ ++..|-+.+=+.=...|.+.--+.+|..+...| +.|..--.-+.+.-...|+.
T Consensus 366 rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~Rk 444 (1666)
T KOG0985|consen 366 RFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRK 444 (1666)
T ss_pred HHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHH
Confidence 33445568999999998888876 666676766666667788888888898888887 55554444455555555555
Q ss_pred HHHHHHHHHH-----HHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCC-----------CCcchHHHHHHHHHcC
Q 040319 116 ELGFQIHALI-----VKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPH-----------KDTVSWNTVISSVVNE 179 (812)
Q Consensus 116 ~~a~~~~~~~-----~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~-----------~~~~~~~~li~~~~~~ 179 (812)
+.....+.+= .+.|--.-++--+.-++.|-|.+ .+..+...|.+... --+.-|-.+|+...+
T Consensus 445 qLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAn-vp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r- 522 (1666)
T KOG0985|consen 445 QLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRAN-VPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR- 522 (1666)
T ss_pred HHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcC-CcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-
Confidence 4433332211 12231111111111223333333 33333332222211 011123334444444
Q ss_pred CChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 040319 180 FEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVAL 259 (812)
Q Consensus 180 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 259 (812)
-+++.+.++...|.+..+ ...-+..+...+........+...+-.+++..-+....+.+.|+.+=... -++-|..+
T Consensus 523 ~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~-aPqVADAI 598 (1666)
T KOG0985|consen 523 SSPDQALQFAMMLVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVH-APQVADAI 598 (1666)
T ss_pred cChhHHHHHHHHhhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhcc-chHHHHHH
Confidence 455555555555522222 22223333344444444444444444444433222233333343332221 12222221
Q ss_pred Hh-cCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC-CCcccHHHH-----HHHHHhCCChHHHHHHHHHHHHcCCCC
Q 040319 260 LE-RMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE-KNSVSYNAL-----LAGYCKNGKAMEALGLFVKLLEEGLVL 332 (812)
Q Consensus 260 ~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~d~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p 332 (812)
+- .|- ...-|..+.+.|-++|-...|++.+..+.+ ..++..+.+ +-.|...-.++++++.++.|+..+++-
T Consensus 599 LgN~mF--tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~Nirq 676 (1666)
T KOG0985|consen 599 LGNDMF--THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQ 676 (1666)
T ss_pred Hhcccc--ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 11 110 011266778888899999999999988865 222222222 235666667899999999999999988
Q ss_pred CHhHHHHHHHHhccchhhhhHHHHHhhHHH-----------hcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----
Q 040319 333 TEFTLTSVVNACGLIMEAKLSEQIHGFVMK-----------FGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPT---- 397 (812)
Q Consensus 333 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-----------~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---- 397 (812)
|..+...+.+-|...-..+...++|+.... .++.-|+.+.-.-|.+-++.|++.+.+++.++-.-
T Consensus 677 NlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpE 756 (1666)
T KOG0985|consen 677 NLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPE 756 (1666)
T ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHH
Confidence 888777776666555445555555554333 24566777778889999999999999888754210
Q ss_pred -------------CCCcee-----eeH-------------HHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-------
Q 040319 398 -------------DRDDSI-----IWT-------------SMICGYARSGKPEHAILLFHQSQSEATVVPDEI------- 439 (812)
Q Consensus 398 -------------~~~~~~-----~~~-------------~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~------- 439 (812)
..|-+. -+. -.|..|++.=++...-.+...... +.-++.
T Consensus 757 rvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD---~dC~E~~ik~Li~ 833 (1666)
T KOG0985|consen 757 RVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD---VDCSEDFIKNLIL 833 (1666)
T ss_pred HHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc---CCCcHHHHHHHHH
Confidence 012011 111 123444443333332222222221 111111
Q ss_pred ------hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHH---------------------
Q 040319 440 ------ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNA--------------------- 492 (812)
Q Consensus 440 ------t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A--------------------- 492 (812)
....+..-+.+.+++..-...++..+..|.. |+.++|+|...|..+++-.+-
T Consensus 834 ~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRD 912 (1666)
T KOG0985|consen 834 SVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRD 912 (1666)
T ss_pred HHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccC
Confidence 1122333344445555555566666666643 777888887766543321111
Q ss_pred -------------------------------HHHHccC----------------------------CC-CChhHHHHHHH
Q 040319 493 -------------------------------IKAFNKM----------------------------PS-HDIVSWNGLIA 512 (812)
Q Consensus 493 -------------------------------~~~f~~~----------------------------~~-~~~~~~~~li~ 512 (812)
+-+.++. ++ .|+.--+.-+.
T Consensus 913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 1111100 00 22222334455
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH--HHHHhcC------------------------CCCchHHHHHHHHH
Q 040319 513 GHLLHRQGDEALAVWSSMEKASIKP-DAITFVL--IISAYRY------------------------TNLNLVDSCRKLFL 565 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~--ll~a~~~------------------------~~~g~~~~a~~~~~ 565 (812)
++...+-+.+-++++++..-..-.- .....-. +++|... ...+.+++|..+|+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifk 1072 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFK 1072 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHH
Confidence 6666667777777777765321100 0011111 1111100 01445556666654
Q ss_pred HhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 566 SMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 566 ~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
... .+......|| -.-+.++.|.++-++.. .+.+|..+..|-...|.+..|..-+-+ .+||+.
T Consensus 1073 kf~------~n~~A~~VLi---e~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~ 1135 (1666)
T KOG0985|consen 1073 KFD------MNVSAIQVLI---ENIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSN 1135 (1666)
T ss_pred Hhc------ccHHHHHHHH---HHhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHH
Confidence 332 1222222222 34566777777776653 356899999999999999988876643 567899
Q ss_pred HHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 646 YILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 646 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
|...+++-.+.|+|++-.++..+.+++.
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 9999999999999999999888776553
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.04 E-value=3.6e-07 Score=91.09 Aligned_cols=296 Identities=15% Similarity=0.053 Sum_probs=188.1
Q ss_pred CCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 040319 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVA 258 (812)
Q Consensus 179 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (812)
.|++..|.++..+- .+.+-.| ...|.....+.-..|+.+.+-.++.++.+..-.++..+.-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rn-ae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRN-AEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHh-hhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 57777777777665 4443333 234455555566667777777777666665435555555555566666666666665
Q ss_pred HHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHH
Q 040319 259 LLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLT 338 (812)
Q Consensus 259 l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 338 (812)
-++ -+.+|..+++........+|.+.|++.....++.+|.+.|+-.|+..-.
T Consensus 175 ~v~----------------------------~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~ 226 (400)
T COG3071 175 NVD----------------------------QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR 226 (400)
T ss_pred HHH----------------------------HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH
Confidence 222 1223444677778888899999999999999999999988655543211
Q ss_pred HHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCC
Q 040319 339 SVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGK 417 (812)
Q Consensus 339 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~ 417 (812)
. ...+++.+++-....+..+.-...++..+.. ++++..-.+++.-+.+.|+
T Consensus 227 l----------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 227 L----------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred H----------------------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence 0 1112222333222223333333455555422 3445566677777888888
Q ss_pred hhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHc
Q 040319 418 PEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFN 497 (812)
Q Consensus 418 ~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 497 (812)
.++|.++..+..+ .+..|+.. .+-.+.+.++.+.-.+..+...+. .+.++..+.+|...|.|.+.+.+|...|+
T Consensus 279 ~~~A~~~i~~~Lk-~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 279 HDEAQEIIEDALK-RQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred hHHHHHHHHHHHH-hccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888888888777 66666522 223445556555555555544442 23345778888899999999999999998
Q ss_pred cCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 498 KMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 498 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
...+ |+..+|+-+..+|.+.|+.++|.+.+++.+..-..|+
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 6654 8888999999999999999999888888775444443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=2e-08 Score=112.97 Aligned_cols=243 Identities=12% Similarity=0.004 Sum_probs=174.6
Q ss_pred ChhhHHHHHHHhcccCCCCCChhh-HHHHHHHh---------cCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhc
Q 040319 417 KPEHAILLFHQSQSEATVVPDEIA-LTSVLGVC---------GTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC 486 (812)
Q Consensus 417 ~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~---------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 486 (812)
..++|+..|++..+ ..|+... +..+..++ ...++.+.|...+..+++.. +.+...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 34677777777766 5565443 22222211 12345788888888888754 34677788888899999
Q ss_pred CCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcCCCCchHHHHHH
Q 040319 487 CNMSNAIKAFNKMPS--H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT-FVLIISAYRYTNLNLVDSCRK 562 (812)
Q Consensus 487 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~g~~~~a~~ 562 (812)
|++++|...|++..+ | +...|..+...|...|++++|+..+++.++ +.|+... +..++..+.. .|++++|..
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~--~g~~eeA~~ 427 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYY--HTGIDDAIR 427 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHh--ccCHHHHHH
Confidence 999999999998765 4 456788899999999999999999999999 6787532 2333444555 788999999
Q ss_pred HHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 563 LFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVS-VWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 563 ~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
.+++..+. ..|+ +..+..+..+|...|+.++|.+.++++. ..|+.. .++.+...+...| +.|...++++++..
T Consensus 428 ~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 428 LGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 99988652 1343 5567888999999999999999998864 556544 4444545566666 47888788877654
Q ss_pred CCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 640 PQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 640 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
-..+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 504 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 504 QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 33333344488889999999999888 666543
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=1.7e-08 Score=103.69 Aligned_cols=210 Identities=11% Similarity=0.025 Sum_probs=149.5
Q ss_pred chHHHHHHHHHHHHhC-CCC--chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 040319 453 FHEMGKQIHSYALKTG-FSS--DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAV 526 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 526 (812)
..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555422 222 245677788889999999999999987765 4578999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-
Q 040319 527 WSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP- 604 (812)
Q Consensus 527 ~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~- 604 (812)
|++.++ +.|+. .++..+..++.. .|++++|.+.|+...+ ..|+..........+...++.++|.+.+++..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~--~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYY--GGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999998 78876 666777777777 8999999999999876 35654322333334556788999999996633
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------ccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 605 -FQPKVSVWRALLDSCRIRLNTTIGKRVAKHIL-------AMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 605 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
..|+...| .+ .....|+...+ ..++.+. ++.|+.+.+|..++.+|.+.|++++|...+++..+..
T Consensus 194 ~~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KLDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hCCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23333222 12 22234444333 2333333 5567777899999999999999999999999886543
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.01 E-value=2.2e-05 Score=82.82 Aligned_cols=525 Identities=13% Similarity=0.068 Sum_probs=264.7
Q ss_pred ccchHHHHHHHHccCChhhHHHHHhcCCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040319 33 TRFGNPLISAYLKLGHVADAYKIFYGLSS-----PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILT 107 (812)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 107 (812)
+.+|-..+....++|++...+..|++... .....|...+....+.+-++-++++|++.++. ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 45666666666677777777777765321 22235666666666667777777777776642 3333455566
Q ss_pred HHHhcCChHHHHHHHHHHHHhC------CCCchHHHHHHHHHhhhcCC--CHHHHHHHHhcCCCC----CcchHHHHHHH
Q 040319 108 ACIRLLELELGFQIHALIVKMG------CVDSVFVTNALMGLYGKFSF--CLDYLLKLFDELPHK----DTVSWNTVISS 175 (812)
Q Consensus 108 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~--~~~~a~~~f~~~~~~----~~~~~~~li~~ 175 (812)
.++..+++++|.+.+..++... .+.+...|.-+-+..++... .--....++..+..+ -...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 6666777777766666654321 13344555555555444320 111233444444432 23467777777
Q ss_pred HHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCC----------------------ChHHHHHHHHHHHHhCC
Q 040319 176 VVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCF----------------------VLMEGRAVHAHAIRIGL 233 (812)
Q Consensus 176 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~g~ 233 (812)
|.+.|.++.|.++|++-.+. ..+..-|..+.++|+... +++....-++.++..+.
T Consensus 258 YIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 77777777777777665221 122223444444433211 11222222222222110
Q ss_pred -----------CCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCc--chhHHHHHHHHHhhCChhHHHHHhcc
Q 040319 234 -----------GANLSVNNALIGFYTKCGRVKDVVALLERMP-------VMD--IITLTEIIIAYMEFGYVDLAVEIFDK 293 (812)
Q Consensus 234 -----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~-------~~~--~~~~~~li~~~~~~g~~~~A~~~f~~ 293 (812)
+.++..|..-+..| .|+..+-...+.+.. .++ ...|..+.+.|-.+|+++.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11222222222211 233444444443331 111 14577778888888888888888888
Q ss_pred CCCCCccc-------HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCC
Q 040319 294 MPEKNSVS-------YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLG 366 (812)
Q Consensus 294 m~~~d~~~-------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 366 (812)
..+-+-.+ |-.-...=.+..+++.|+.+.+.... .|.... +..+-. +..-++ .+-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~~yd~-~~pvQ~----------rlh 474 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LEYYDN-SEPVQA----------RLH 474 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hhhhcC-CCcHHH----------HHH
Confidence 76633333 33333334455666677666555443 333221 111111 111000 011
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHH---HHHHcCChhhHHHHHHHhcccCCCCCChh-hHH
Q 040319 367 SNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMIC---GYARSGKPEHAILLFHQSQSEATVVPDEI-ALT 442 (812)
Q Consensus 367 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~ 442 (812)
.+..++...++.--.+|-++....+++++. +-. +.|-..+++ -+-.+.-++++.++|++-.. --.-|+.. .|+
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdrii-dLr-iaTPqii~NyAmfLEeh~yfeesFk~YErgI~-LFk~p~v~diW~ 551 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRII-DLR-IATPQIIINYAMFLEEHKYFEESFKAYERGIS-LFKWPNVYDIWN 551 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHh-cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc-cCCCccHHHHHH
Confidence 234456666666677788888888888876 311 222111221 12345567888888876554 32345543 455
Q ss_pred HHHHHhc-Cc--cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhh----hcCCHHHHHHHHccCCC-----CChhHHHHH
Q 040319 443 SVLGVCG-TL--GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF----KCCNMSNAIKAFNKMPS-----HDIVSWNGL 510 (812)
Q Consensus 443 ~ll~a~~-~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~~~~-----~~~~~~~~l 510 (812)
+.|.-+. +. ..++.++.+|+++++ |.+|.. ...+--.|+ +-|....|..++++... .-...||..
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~--aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~ 628 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH--AKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5554332 22 367888888888888 555432 222222343 34667777777776543 123467776
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhh
Q 040319 511 IAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS-AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGY 589 (812)
Q Consensus 511 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~ 589 (812)
|.--+..=-......+|++.++ .-||...-...|. |=...+.|.++.|..++..-.+-..-..+.+.|.+.-+.=.+
T Consensus 629 I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvr 706 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVR 706 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHh
Confidence 6544433334445566677666 4666543332222 111112566666666665443311111124445555444455
Q ss_pred cCC
Q 040319 590 WGF 592 (812)
Q Consensus 590 ~g~ 592 (812)
.|+
T Consensus 707 HGn 709 (835)
T KOG2047|consen 707 HGN 709 (835)
T ss_pred cCC
Confidence 555
No 68
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.01 E-value=2.6e-07 Score=92.05 Aligned_cols=286 Identities=12% Similarity=0.043 Sum_probs=159.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 040319 312 NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKM 391 (812)
Q Consensus 312 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 391 (812)
.|++.+|+++..+-.+.+-.|- ..|..-..+....|+.+.+......+.+.--.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4777777777777666654442 334444555666677777777777776665566666666777777778888888777
Q ss_pred HhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCC
Q 040319 392 FYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFS 470 (812)
Q Consensus 392 f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 470 (812)
.+++... +.+..........|.+.|++.+.+.++.+|.+ .+.--|+.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~-----------------~~l---------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEA-----------------ARL---------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHH-----------------HHH----------
Confidence 6665422 22256677777888888888888888888887 655443321 110
Q ss_pred CchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS 547 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 547 (812)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+-.++.
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~---- 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLI---- 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHH----
Confidence 112233333333333334444444555443 345555566777778888888888888888877777632222
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNM-PFQPKVSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~ 626 (812)
.+.. .++...-++..+...+.++-.| ..+.+|..+|.+.+.+.+|.+.++.. +..|+...|.-+..++-..|+.+
T Consensus 303 ~~l~--~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 303 PRLR--PGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred hhcC--CCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChH
Confidence 2334 4555554444444443332222 33444444444444444444444432 13344444444444444444444
Q ss_pred HHHHHHHHH
Q 040319 627 IGKRVAKHI 635 (812)
Q Consensus 627 ~a~~~~~~~ 635 (812)
.|.+..+..
T Consensus 379 ~A~~~r~e~ 387 (400)
T COG3071 379 EAEQVRREA 387 (400)
T ss_pred HHHHHHHHH
Confidence 444443333
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=2.3e-08 Score=92.04 Aligned_cols=162 Identities=16% Similarity=0.148 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASL 583 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 583 (812)
....|..+|.+.|+...|.+-+++.++ ..|+. .++..+...|.. .|..+.|.+.|+...+ +.|+ -++.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~--~Ge~~~A~e~YrkAls---l~p~~GdVLNNY 109 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQK--LGENDLADESYRKALS---LAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHH--cCChhhHHHHHHHHHh---cCCCccchhhhh
Confidence 344577788899999999999999988 77876 667777777888 8999999999988875 5565 6788889
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCc
Q 040319 584 VSVLGYWGFLEEAEETINNMPFQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRW 659 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 659 (812)
.-.||..|++++|...|++....|+ ..+|..+.....+.|+.+.|+..+++.++++|+.+.....+++...+.|++
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 9999999999999999988653443 457778777777899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCC
Q 040319 660 HNSELVREDMREKGF 674 (812)
Q Consensus 660 ~~a~~~~~~m~~~g~ 674 (812)
-.|...++....++.
T Consensus 190 ~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 190 APARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhccc
Confidence 999999998876655
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=2.8e-06 Score=91.60 Aligned_cols=499 Identities=12% Similarity=0.057 Sum_probs=249.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH---hcCChHHH-------------------HHH----HHHHHHhC
Q 040319 76 KLGREEEAIELFFRMRSEGIVPNEHSFVAILTACI---RLLELELG-------------------FQI----HALIVKMG 129 (812)
Q Consensus 76 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~a-------------------~~~----~~~~~~~g 129 (812)
..+++++++.-+..-...+...++.++..+..++. ..++.+.. ... +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 34666777777777777776666666666554433 22333333 111 12222223
Q ss_pred CCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHH
Q 040319 130 CVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPH---KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTIS 206 (812)
Q Consensus 130 ~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 206 (812)
+..|+.+|..|.-+..++| .+..+-+.|++... .....|+.+-..|...|.-..|..+.+.-.....-++|...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 5567777888888888888 88888888876553 3455788888888888887888888776522221122333333
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhh
Q 040319 207 TLLTACT-GCFVLMEGRAVHAHAIRIG--L--GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEF 281 (812)
Q Consensus 207 ~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~ 281 (812)
..-+.|. +.+..+++..+-..++... . ......+-.+.-+|...-
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A------------------------------ 447 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA------------------------------ 447 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh------------------------------
Confidence 3333343 3344444444444433311 0 001111111111111100
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHhccchhhhhHHHHHhhH
Q 040319 282 GYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEG-LVLTEFTLTSVVNACGLIMEAKLSEQIHGFV 360 (812)
Q Consensus 282 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 360 (812)
....++. -+.....++++.+++.++.+ -.|+..-|.++- ++..++++.|.+...+.
T Consensus 448 ---------------~~a~~~s------eR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~ea 504 (799)
T KOG4162|consen 448 ---------------RQANLKS------ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREA 504 (799)
T ss_pred ---------------hcCCChH------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHH
Confidence 0000000 00112345566666665543 234433333332 33455666666666666
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh
Q 040319 361 MKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI 439 (812)
Q Consensus 361 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 439 (812)
.+.+-..+...+--|.-.+...+++.+|+.+.+....+.+ |-+....-|..-..-++.++|+.....+.. +--+..
T Consensus 505 L~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~---~we~~~ 581 (799)
T KOG4162|consen 505 LALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA---LWEAEY 581 (799)
T ss_pred HHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH---HHHhhh
Confidence 6665566666666666666667777777766654331211 111111112222234556666555544432 000000
Q ss_pred hHHHHHHHhcCccchHHHHHHHHHHH--HhCCCCchhHHHH---HHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHH
Q 040319 440 ALTSVLGVCGTLGFHEMGKQIHSYAL--KTGFSSDLGVANS---MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGH 514 (812)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~~~~~~~--~~g~~~~~~~~~~---Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 514 (812)
.+.. .++-....+....+. .......+.++.. ++..=.+.-..+..+..+...+.|+. +|..+
T Consensus 582 ~~q~-------~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~-~~~~~---- 649 (799)
T KOG4162|consen 582 GVQQ-------TLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS-LWYLL---- 649 (799)
T ss_pred hHhh-------hhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc-hHHHH----
Confidence 0000 000000000000000 0000001111211 11111111111111111222222221 12111
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCCh
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFL 593 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~ 593 (812)
...+......+.. .+..++|...+.+... +.|- ...|.-....+...|.+
T Consensus 650 ------------------------~~lwllaa~~~~~--~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 650 ------------------------QKLWLLAADLFLL--SGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred ------------------------HHHHHHHHHHHHh--cCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhh
Confidence 1112222233444 5555566555554443 2332 44555566777788888
Q ss_pred HHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 594 EEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKR--VAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 594 ~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+||.+.|.... +.|+ +.+..++...+...|+...|.. +...+++++|.++.+|..|+.++-+.|+.++|.+.+...
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 88888877654 6774 6678888888888888888888 889999999999999999999999999999999988877
Q ss_pred HhC
Q 040319 670 REK 672 (812)
Q Consensus 670 ~~~ 672 (812)
-+-
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 543
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=2.8e-07 Score=88.93 Aligned_cols=271 Identities=14% Similarity=0.109 Sum_probs=145.9
Q ss_pred CCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 040319 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVA 258 (812)
Q Consensus 179 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (812)
+.++++|.++|-+|.+. -+-+..+-.++-+.+.+.|..+.|..+|..+.++ ||...-..+
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~--------------- 107 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRL--------------- 107 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHH---------------
Confidence 46889999999999321 1112223345666677888888888888887764 222111000
Q ss_pred HHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 040319 259 LLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSV---SYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEF 335 (812)
Q Consensus 259 l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 335 (812)
...-.|..-|...|-+|.|+.+|..+.+.+.. ....|+..|.+..++++|++.-+++...|-++..+
T Consensus 108 ----------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 108 ----------LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred ----------HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 01112333444555555555577777664333 45567888999999999999988888766544332
Q ss_pred HHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHH
Q 040319 336 TLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYAR 414 (812)
Q Consensus 336 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~ 414 (812)
-.. ..|.-|...+....+.+.|..++.+.... +..+..--.+-..+..
T Consensus 178 eIA-------------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 178 EIA-------------------------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA 226 (389)
T ss_pred HHH-------------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh
Confidence 211 11222333344455666666666654422 2223333334455666
Q ss_pred cCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHH
Q 040319 415 SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIK 494 (812)
Q Consensus 415 ~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 494 (812)
.|+++.|++.++...+ . .|+ --..+...|..+|...|+.++...
T Consensus 227 ~g~y~~AV~~~e~v~e-Q--n~~---------------------------------yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 227 KGDYQKAVEALERVLE-Q--NPE---------------------------------YLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred ccchHHHHHHHHHHHH-h--ChH---------------------------------HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7777777777776665 2 222 222333445555555555555555
Q ss_pred HHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040319 495 AFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISA 548 (812)
Q Consensus 495 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 548 (812)
.+.++.+ +++..-+.+-..-....-.+.|.....+-+. -+|+...|..++..
T Consensus 271 fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~ 324 (389)
T COG2956 271 FLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence 5544433 3333333333322333333444444444444 46666666666654
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=5.5e-07 Score=86.99 Aligned_cols=310 Identities=14% Similarity=0.109 Sum_probs=150.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhccchhhhhHHHHHhhHHHhcC-CCc--hhHHHHHHHHHHhcCCHH
Q 040319 311 KNGKAMEALGLFVKLLEEGLVLTEF-TLTSVVNACGLIMEAKLSEQIHGFVMKFGL-GSN--DCIEAALLDMLTRCGRMA 386 (812)
Q Consensus 311 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~--~~~~~~Li~~y~~~g~~~ 386 (812)
-+.+.++|.++|-+|.+.. |..+ +-.++=+-+-+.|..+.|..+|..+.++.- ..+ ..+.-.|..-|...|-++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3568899999999998732 2211 222333344455566666666655554311 111 122233444455555555
Q ss_pred HHHHHHhcCCCCCC--ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHH
Q 040319 387 DAEKMFYRWPTDRD--DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYA 464 (812)
Q Consensus 387 ~A~~~f~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 464 (812)
.|+.+|..+. +.+ -......++..|-+..++++|++.-++... .+-.+..+-
T Consensus 125 RAE~~f~~L~-de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~e------------------------ 178 (389)
T COG2956 125 RAEDIFNQLV-DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHh-cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhH------------------------
Confidence 5555555544 222 011233344444444444444444444433 221111110
Q ss_pred HHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--
Q 040319 465 LKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD---IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-- 539 (812)
Q Consensus 465 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-- 539 (812)
=...|.-|...+.-..+++.|..++.+..+.| +..=-.+...+...|+++.|++.++...+. .|+.
T Consensus 179 -------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~ 249 (389)
T COG2956 179 -------IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLS 249 (389)
T ss_pred -------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHH
Confidence 01223334444445556666666666554422 222223445566667777777777777663 3443
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHH-hCCCCCCHHHHHHHHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETIN-NMPFQPKVSVWRALLDS 618 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~-~m~~~p~~~~~~~ll~~ 618 (812)
.+...|..+|.+ .|+.+++...+..+.+ ..+....-..|.+......-.++|...+. ...-+|+...+..|+..
T Consensus 250 evl~~L~~~Y~~--lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 250 EVLEMLYECYAQ--LGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 344555666666 6666666666666654 22333333333333333333333333322 23334544444333332
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEe
Q 040319 619 CRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFY 693 (812)
Q Consensus 619 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~ 693 (812)
-.. =+.-|++.+-.-+.+.|....++..|.+.=-..+-..|.|.
T Consensus 325 ~l~-------------------------------daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 325 HLA-------------------------------DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred hhc-------------------------------cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 110 12335677777888888777777777654444444455553
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=98.94 E-value=5.3e-08 Score=109.51 Aligned_cols=210 Identities=9% Similarity=0.007 Sum_probs=161.5
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhh---------hcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCC
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF---------KCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ 519 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~---------k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 519 (812)
+.++.|...+...++... .+...+..|..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 456788888888887432 23455555555443 33458899999988765 456788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCc-chHHHHHHHHhhcCChHHHH
Q 040319 520 GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWGFLEEAE 597 (812)
Q Consensus 520 ~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~ 597 (812)
+++|+..|++.++ ..|+. ..+..+..++.. .|++++|...++...+ +.|+. ..+..+...+...|++++|+
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~--~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFM--AGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHH
Confidence 9999999999999 77886 456666667888 9999999999999987 45653 23334455577789999999
Q ss_pred HHHHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 598 ETINNMP--FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 598 ~~~~~m~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.+++.. ..|+ +..+..+..++...|+.++|+..++++....|.+......++..|...| ++|...++.+.+
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9998864 2464 4456666667788999999999999999899988888888999999888 488887777654
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=4e-06 Score=85.54 Aligned_cols=81 Identities=10% Similarity=-0.002 Sum_probs=53.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHhhh
Q 040319 69 SLISGLAKLGREEEAIELFFRMRSEGIVPN-EHSFVAILTACIRLLELELGFQIHALIVKMGCVDS-VFVTNALMGLYGK 146 (812)
Q Consensus 69 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~ 146 (812)
..-.-|.++|.+++|+++|.+..+. .|| +..|...--+|...|+|+...+--...++. .|+ +-.+..--+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445577889999999999998874 677 777888888888889988877655554443 333 2233333344444
Q ss_pred cCCCHHHH
Q 040319 147 FSFCLDYL 154 (812)
Q Consensus 147 ~g~~~~~a 154 (812)
.| .+++|
T Consensus 196 lg-~~~ea 202 (606)
T KOG0547|consen 196 LG-KFDEA 202 (606)
T ss_pred hc-cHHHH
Confidence 55 44444
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.90 E-value=1.8e-07 Score=93.13 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=121.4
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 482 (812)
..+..+...|...|++++|++.+++... ..|+ +...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE---HDPD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcc----------------------------------cHHHHHHHHHH
Confidence 3455666677777777777777776654 2222 23344455556
Q ss_pred hhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHH
Q 040319 483 YFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 483 y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~ 558 (812)
|...|++++|.+.|++..+ .+...+..+...|...|++++|++.|++.......|.. ..+..+...+.. .|+++
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~ 152 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK--AGDFD 152 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH--cCCHH
Confidence 6666666666666655443 33455666666777777777777777777664322322 334444455555 77777
Q ss_pred HHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 559 SCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-F-QPKVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
+|...|+...+. .| +...+..+...+...|++++|.+.+++.. . +++...+..+...+...|+.+.|....+.+
T Consensus 153 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 153 KAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777776652 23 34566777777777788888877777643 2 234555556666677778888888777766
Q ss_pred HccCC
Q 040319 636 LAMEP 640 (812)
Q Consensus 636 ~~~~p 640 (812)
.+..|
T Consensus 230 ~~~~~ 234 (234)
T TIGR02521 230 QKLFP 234 (234)
T ss_pred HhhCc
Confidence 65543
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.90 E-value=3.5e-06 Score=90.86 Aligned_cols=376 Identities=12% Similarity=0.044 Sum_probs=195.1
Q ss_pred cchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHH-
Q 040319 267 DIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVN- 342 (812)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 342 (812)
|...|..+.-++...|+++.+.+.|++... .....|+.+-..|...|.-..|..++++-......|+..+--.+..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 445566666777777777777777776653 3345677777788888888888888877665544454444333333
Q ss_pred Hh-ccchhhhhHHHHHhhHHHhc--CC--CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCC
Q 040319 343 AC-GLIMEAKLSEQIHGFVMKFG--LG--SNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGK 417 (812)
Q Consensus 343 a~-~~~~~~~~a~~i~~~~~~~g--~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~ 417 (812)
.| .+.+..+++..+-..++... .. .....+-.+.-+|...-. . ..++. -+...
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~-------------~---a~~~s------eR~~~ 459 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR-------------Q---ANLKS------ERDAL 459 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh-------------c---CCChH------HHHHH
Confidence 23 23455555555554444411 00 111122222222221100 0 00000 00111
Q ss_pred hhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHc
Q 040319 418 PEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFN 497 (812)
Q Consensus 418 ~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 497 (812)
..++++.+++..+..+-.|+..-|.++- ++-.++++.|.+...+..+.+-..++..|..|.-.+.-.+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 2344555555544233334333333332 23344555555555555555444555555555555555666666655554
Q ss_pred cCCC--CC-h--------------------hHHHHHHHH------HHhcCChHHHHHHHHHHHHCCCCC-CH-HHHHHHH
Q 040319 498 KMPS--HD-I--------------------VSWNGLIAG------HLLHRQGDEALAVWSSMEKASIKP-DA-ITFVLII 546 (812)
Q Consensus 498 ~~~~--~~-~--------------------~~~~~li~~------~~~~g~~~~A~~l~~~m~~~g~~p-d~-~t~~~ll 546 (812)
...+ ++ - .+...++.. .-+.|+-...+++...+.-.--.| |. .|+..+.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 3322 11 0 000011100 011111122222222221110011 11 2333332
Q ss_pred HHh-cCCCCchHHHHHHHHHHhhhhcCccCC--------cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 040319 547 SAY-RYTNLNLVDSCRKLFLSMKTIYNIEPT--------SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRAL 615 (812)
Q Consensus 547 ~a~-~~~~~g~~~~a~~~~~~m~~~~~~~p~--------~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l 615 (812)
.-. ++.+.-..+.. +.. .-..|. ...|....+.+.+.+..++|..-+.+.. +.| ....|.-.
T Consensus 618 ~l~a~~~~~~~se~~------Lp~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK------LPS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred HHHHhhhhhcccccc------cCc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 211 22000011111 221 223333 3467788899999999999997776654 455 45566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHH--HHHHHHhCC
Q 040319 616 LDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL--VREDMREKG 673 (812)
Q Consensus 616 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~--~~~~m~~~g 673 (812)
...+-..|+.++|.+.+..++.++|+++.....++.+|.+.|+-.-|.. +...+.+.+
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 6667788999999999999999999999999999999999998776666 666665443
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=6.2e-08 Score=93.20 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=151.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCcc
Q 040319 373 AALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLG 452 (812)
Q Consensus 373 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~ 452 (812)
+-+...|.+.|.+.+|++.|+......+-+.||--+-+.|.+..++..|+.+|.+-.+ ..|-.+||.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l---------- 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYL---------- 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhh----------
Confidence 4556666666666666666665443444455666666666666666666666665554 444444442
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSS 529 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 529 (812)
.-+...+-..++.++|.++++...+ -|+.+...+..+|...++++-|+..|++
T Consensus 294 ------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 294 ------------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred ------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 2223333444555666666655443 3444445556667777788888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-
Q 040319 530 MEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPK- 608 (812)
Q Consensus 530 m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~- 608 (812)
+++.|+.. ...|+.+.-+|.. .+.+|-++..|++... .| ..|+
T Consensus 350 iLqmG~~s-peLf~NigLCC~y--aqQ~D~~L~sf~RAls--------------------------------ta-t~~~~ 393 (478)
T KOG1129|consen 350 ILQMGAQS-PELFCNIGLCCLY--AQQIDLVLPSFQRALS--------------------------------TA-TQPGQ 393 (478)
T ss_pred HHHhcCCC-hHHHhhHHHHHHh--hcchhhhHHHHHHHHh--------------------------------hc-cCcch
Confidence 88877543 3445555556666 6667766666655543 01 1232
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 609 -VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 609 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+.+|-.|.......||+..|.+.++-++.-+|++..+++.|+-+-.+.|+.++|..+....+..
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4578888777788899999999999999999999999999999999999999999999987653
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2.9e-05 Score=81.41 Aligned_cols=439 Identities=18% Similarity=0.163 Sum_probs=223.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH--HHHHhh--h
Q 040319 71 ISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNA--LMGLYG--K 146 (812)
Q Consensus 71 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~ 146 (812)
+.-+..+|++++|.+.-.+....+ +-|...+..=+-++.+.+.++.|..+.. +.+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 455667888999999998888765 4456667777777788888888774333 2221 111121 234444 4
Q ss_pred cCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC-CCcchHHHHHHHHhcCCChHHHHHHH
Q 040319 147 FSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFT-VDYFTISTLLTACTGCFVLMEGRAVH 225 (812)
Q Consensus 147 ~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~-pd~~t~~~ll~~~~~~~~~~~a~~~~ 225 (812)
.+ .+++|.+.++....-+..+-..=...+.+.|++++|+++|+.+ ..++.. -|...-..++.+... .+.
T Consensus 92 ln-k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L-~kn~~dd~d~~~r~nl~a~~a~-------l~~- 161 (652)
T KOG2376|consen 92 LN-KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL-AKNNSDDQDEERRANLLAVAAA-------LQV- 161 (652)
T ss_pred cc-cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHh-------hhH-
Confidence 56 7788888777444444445555556677778888888888877 332221 111111222221110 000
Q ss_pred HHHHHhCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhc-cCCCCCc--
Q 040319 226 AHAIRIGLGAN---LSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFD-KMPEKNS-- 299 (812)
Q Consensus 226 ~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~-~m~~~d~-- 299 (812)
..+......|+ ...|| ....+...|++.+|+++++... ++-. .+.+.|.
T Consensus 162 ~~~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNE 216 (652)
T ss_pred HHHHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccch
Confidence 01111122221 11222 2334455666666666554430 0000 0011110
Q ss_pred ---c-----cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH---HHHhccchhhhhH--HHH----------
Q 040319 300 ---V-----SYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSV---VNACGLIMEAKLS--EQI---------- 356 (812)
Q Consensus 300 ---~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--~~i---------- 356 (812)
. .---|.-++...|+.++|..+|...+... .+|....... |-+.....++-.+ ...
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~ 295 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAE 295 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHH
Confidence 0 01123334556677777777777766654 2233221111 1122111111110 000
Q ss_pred -HhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHH--HcCChhhHHHHHHHhcccCC
Q 040319 357 -HGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYA--RSGKPEHAILLFHQSQSEAT 433 (812)
Q Consensus 357 -~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~g 433 (812)
+.......-......-+.|+.+|. +..+.++++-..++...| ...+.+++.... +......|.+++...-.
T Consensus 296 ~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--- 369 (652)
T KOG2376|consen 296 FLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFAD--- 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc---
Confidence 000000111112222345555554 556777888777775556 455555554332 22346677777766654
Q ss_pred CCCCh--hhHHHHHHHhcCccchHHHHHHHH--------HHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--
Q 040319 434 VVPDE--IALTSVLGVCGTLGFHEMGKQIHS--------YALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-- 501 (812)
Q Consensus 434 ~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~--------~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-- 501 (812)
-.|+. ...-..+......|+++.|..++. .+.+.+. .+.+-.+++.+|.+.++.+.|..++++...
T Consensus 370 ~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 370 GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 33433 233344455677888888888887 4444333 344556778888888888777777765432
Q ss_pred ----CChh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040319 502 ----HDIV----SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLF 564 (812)
Q Consensus 502 ----~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~ 564 (812)
+... .|.-+...-.++|+-++|..+++++.+. -.+|..+...++.+|+. =+++.|..+-
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~---~d~eka~~l~ 514 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR---LDPEKAESLS 514 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh---cCHHHHHHHh
Confidence 2222 2233333334667777777777777773 23444666667777665 2455555443
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=1.6e-05 Score=84.61 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=50.7
Q ss_pred HHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHH
Q 040319 411 GYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMS 490 (812)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 490 (812)
+-.....+.+|+.+++.++. . +.-..-|..+..-|++.|+++.|++++-.. ..++--|+||.+.|+++
T Consensus 741 aai~akew~kai~ildniqd-q--k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQD-Q--KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhh-h--ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 33444555666666655554 1 122223444455556666666665555322 12233455666666666
Q ss_pred HHHHHHccCCCCC--hhHHHHHHHHHHhcCChHHHHHHH
Q 040319 491 NAIKAFNKMPSHD--IVSWNGLIAGHLLHRQGDEALAVW 527 (812)
Q Consensus 491 ~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~ 527 (812)
+|.++-.+...|. +.+|-+-..-+-.+|++.+|.++|
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 6665555544432 233333333344455555555544
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.83 E-value=6.2e-07 Score=92.19 Aligned_cols=229 Identities=11% Similarity=-0.010 Sum_probs=151.6
Q ss_pred CChhhHHHHHHHhcccCCCCCCh--hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHH
Q 040319 416 GKPEHAILLFHQSQSEATVVPDE--IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAI 493 (812)
Q Consensus 416 g~~~~A~~~~~~m~~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 493 (812)
+..+.++.-+.++.......|+. ..|...-..+...|..+.|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455666666665422233332 234444455666777777777777776643 346778899999999999999999
Q ss_pred HHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 494 KAFNKMPS--H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 494 ~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
..|+...+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+.. .++.++|...|+....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~--~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAES--KLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHc--cCCHHHHHHHHHHHHh-
Confidence 99998765 4 467888899999999999999999999998 67876422222222334 6789999999976543
Q ss_pred cCccCCcchHHHHHHHHhhcCChHH--HHHHHHh-CC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC-C
Q 040319 571 YNIEPTSEHYASLVSVLGYWGFLEE--AEETINN-MP----FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEP-Q 641 (812)
Q Consensus 571 ~~~~p~~~~y~~li~~l~~~g~~~~--A~~~~~~-m~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-~ 641 (812)
...|+...+ .++..+ .|+..+ +.+.+.+ .. ..| ....|..+...+...|+.++|...++++++++| +
T Consensus 194 -~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 123333222 333333 444433 3333332 11 222 345788899999999999999999999999997 4
Q ss_pred CCchHHHHHhhhh
Q 040319 642 DPATYILVSNLYS 654 (812)
Q Consensus 642 ~~~~~~~l~~~y~ 654 (812)
...+-..++.+..
T Consensus 270 ~~e~~~~~~e~~~ 282 (296)
T PRK11189 270 FVEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 4555444554433
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=3.5e-05 Score=75.46 Aligned_cols=284 Identities=14% Similarity=0.099 Sum_probs=153.0
Q ss_pred HHHHHccCChhhHHHHHhcCCC---CChhhHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 040319 40 ISAYLKLGHVADAYKIFYGLSS---PNVVSFTS-LISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLEL 115 (812)
Q Consensus 40 i~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 115 (812)
+.-+....++..|+.+++.-.. ....+.+. +..++...|++++|+..|..+.+.. .|+...+..+-.+.--.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 3445556777888887764331 11112222 3445678899999999998877754 44555555555444556777
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHH-HHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHh
Q 040319 116 ELGFQIHALIVKMGCVDSVFVTNA-LMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKR 194 (812)
Q Consensus 116 ~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 194 (812)
.+|+++-.. .|+....+. |...--|.+ +-......-+.+... ..---+|.+.....-.+++|+++|...+.
T Consensus 108 ~eA~~~~~k------a~k~pL~~RLlfhlahkln-dEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEK------APKTPLCIRLLFHLAHKLN-DEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhh------CCCChHHHHHHHHHHHHhC-cHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777776554 344444444 445555667 666665555444322 11122333444444568899999998843
Q ss_pred cCCCCCCcchHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CChHHHHHHHhcCCCCcchhH
Q 040319 195 DNGFTVDYFTISTLLTA-CTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKC--GRVKDVVALLERMPVMDIITL 271 (812)
Q Consensus 195 ~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~~~~~~~~~~ 271 (812)
. .|+-...+.-+.. +.+..-.+.+.++++.-++. ++.+...-|....-..+. |+..+++. ..+.. +...-
T Consensus 180 d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~--k~lad-N~~~~ 252 (557)
T KOG3785|consen 180 D---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEK--KELAD-NIDQE 252 (557)
T ss_pred c---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHH--HHHHh-ccccc
Confidence 2 3555555444443 46777777788887776664 344444455444333332 33332221 11111 11111
Q ss_pred HHHHHHHHhhC-----ChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 040319 272 TEIIIAYMEFG-----YVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVV 341 (812)
Q Consensus 272 ~~li~~~~~~g-----~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 341 (812)
-..+.-+++.+ .-+-|++++-.+.+-=+..--.|+--|.+.++..+|..+.+++.- ..|-++....+.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv 325 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV 325 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH
Confidence 22344444443 345566665544332222333445557888999999888776532 344444444333
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.82 E-value=1.6e-05 Score=84.25 Aligned_cols=459 Identities=12% Similarity=0.078 Sum_probs=228.8
Q ss_pred ccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHH
Q 040319 10 QCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS---PNVVSFTSLISGLAKLGREEEAIEL 86 (812)
Q Consensus 10 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 86 (812)
..+....+....+.+++ +++-.+.+.....-.+...|+.++|......-.+ ..-+.|.++--.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34566667777777776 3344444444444445667899999988876554 4567899888888888999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCc
Q 040319 87 FFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDT 166 (812)
Q Consensus 87 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~ 166 (812)
|......+ +-|...+.-+--.-++.++++.... +.+.++. ......
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~---------------tr~~LLq------------------l~~~~r 143 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE---------------TRNQLLQ------------------LRPSQR 143 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH---------------HHHHHHH------------------hhhhhH
Confidence 99988754 2334444443333333333332222 1121211 122355
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHH------HhcCCChHHHHHHHHHHHHhCCCCchhHH
Q 040319 167 VSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTA------CTGCFVLMEGRAVHAHAIRIGLGANLSVN 240 (812)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 240 (812)
..|..+..++.-.|++..|..+.++..+...-.|+...|.....- ....|..+.+.+.+...... +......-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 678888888888999999999998884333334665554333222 34556666666555443321 11122223
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC--CcchhHH-HHHHHHHhhCChhHHH-HHhccCCC---CCcccHHHHHHHHHhCC
Q 040319 241 NALIGFYTKCGRVKDVVALLERMPV--MDIITLT-EIIIAYMEFGYVDLAV-EIFDKMPE---KNSVSYNALLAGYCKNG 313 (812)
Q Consensus 241 ~~li~~~~~~g~~~~A~~l~~~~~~--~~~~~~~-~li~~~~~~g~~~~A~-~~f~~m~~---~d~~~~~~li~~~~~~g 313 (812)
-.-.+.+.+.+++++|..++..+.. ||-..|. .+..++.+-.+.-++. .+|....+ +....-..=++......
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEE 302 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcch
Confidence 3445667777888888887777653 3333333 3344444333333333 44444332 10000000011111112
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 040319 314 KAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFY 393 (812)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 393 (812)
-.+..-+++..+.+.|+.|--..+.++.. .....+ +.-.|+..|...-....+....+
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~-------------------~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVA-------------------FLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhH-------------------HHHHHHHHHHhhcccccCCCccc
Confidence 23334455666666776654333333322 111111 11112222221111000000000
Q ss_pred cCCCCCCceeeeHH--HHHHHHHcCChhhHHHHHHHhcccCCCCCChhh-HHHHHHHhcCccchHHHHHHHHHHHHhCCC
Q 040319 394 RWPTDRDDSIIWTS--MICGYARSGKPEHAILLFHQSQSEATVVPDEIA-LTSVLGVCGTLGFHEMGKQIHSYALKTGFS 470 (812)
Q Consensus 394 ~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 470 (812)
.-..++|....|+. ++..|-..|+++.|+..++.... -.|+.+- |..=.+.+...|.++.|..++....+.. .
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 00012333334433 45556666666666666666554 3344332 2222244555666666666666655533 2
Q ss_pred CchhHHHHHHHHhhhcCCHHHHHHHHccCCCCC--h--------hHHHHH--HHHHHhcCChHHHHHHHHHH
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD--I--------VSWNGL--IAGHLLHRQGDEALAVWSSM 530 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~--~--------~~~~~l--i~~~~~~g~~~~A~~l~~~m 530 (812)
+|..+-+--+....+..++++|..+.......+ . -.|-.+ ..+|.+.|++..|++-|...
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 344444344555556666666666654443311 1 233332 23455555555555544443
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.78 E-value=2.4e-07 Score=99.11 Aligned_cols=238 Identities=14% Similarity=0.136 Sum_probs=152.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CCcee-eeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh
Q 040319 369 DCIEAALLDMLTRCGRMADAEKMFYRWPTD--------RDDSI-IWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI 439 (812)
Q Consensus 369 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 439 (812)
..+..-|..+|...|+++.|..+|+..... .+.+. ..+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~---i----- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT---I----- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---H-----
Confidence 344445777777777777777777653311 11111 122344566667777777777766654 0
Q ss_pred hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC----------CChh-HHH
Q 040319 440 ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS----------HDIV-SWN 508 (812)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----------~~~~-~~~ 508 (812)
.....-...+.-..+++.|...|.+.|++++|...+++..+ |.+. ..+
T Consensus 271 ---------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 271 ---------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred ---------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 00000000111233455566677777777777666554322 3332 355
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc-----CccCC
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKA---SIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY-----NIEPT 576 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~-----~~~p~ 576 (812)
.++..|...+++++|..+++...+. -..++. -+++.+-..+-+ .|.+++|.++|+++.... +..+.
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~--~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK--MGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 6677788888888888888876542 123333 467778888888 899999999998776522 11222
Q ss_pred -cchHHHHHHHHhhcCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 577 -SEHYASLVSVLGYWGFLEEAEETINNMP--------FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 577 -~~~y~~li~~l~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
-.+++.|...|.+.++.++|.++|.+.. ..|+ ..++..|...|+..|+++.|+++.++++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4567888889999999998888887642 3344 46899999999999999999999888873
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=5.1e-06 Score=80.87 Aligned_cols=210 Identities=15% Similarity=0.129 Sum_probs=129.5
Q ss_pred HHHHHHHhhCChhHHHHHhccCCCCCcccHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchh
Q 040319 273 EIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALL---AGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIME 349 (812)
Q Consensus 273 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 349 (812)
.+-..+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=|...++ .+||-..-..
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi---------- 110 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI---------- 110 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH----------
Confidence 3455666667777777777777777777777765 357777777777766666665 3455322110
Q ss_pred hhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhc
Q 040319 350 AKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQ 429 (812)
Q Consensus 350 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 429 (812)
.. ...+.+.|.++.|..=|+.+....|+. +....++.+.-..++-.
T Consensus 111 ------------QR------------g~vllK~Gele~A~~DF~~vl~~~~s~---~~~~eaqskl~~~~e~~------- 156 (504)
T KOG0624|consen 111 ------------QR------------GVVLLKQGELEQAEADFDQVLQHEPSN---GLVLEAQSKLALIQEHW------- 156 (504)
T ss_pred ------------Hh------------chhhhhcccHHHHHHHHHHHHhcCCCc---chhHHHHHHHHhHHHHH-------
Confidence 00 112457788888888887766332211 11111111111111111
Q ss_pred ccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHcc---CCCCChhH
Q 040319 430 SEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNK---MPSHDIVS 506 (812)
Q Consensus 430 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~---~~~~~~~~ 506 (812)
.....+......|+...+......+++.. +-|...+..-.++|...|++..|..-+.. +...+...
T Consensus 157 ----------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~ 225 (504)
T KOG0624|consen 157 ----------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEG 225 (504)
T ss_pred ----------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHH
Confidence 12223333444566666666666666532 34777777778899999999999765554 44466677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
..-+-..+...|+.+.++...++.++ +.||...
T Consensus 226 ~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 226 HYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 77777888889999999999999998 8899743
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.77 E-value=8.6e-06 Score=90.01 Aligned_cols=177 Identities=14% Similarity=0.083 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhCCCCc-hHHHHHHHHHhhhcCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHh
Q 040319 117 LGFQIHALIVKMGCVDS-VFVTNALMGLYGKFSFCLDYLLKLFDELPH---KDTVSWNTVISSVVNEFEYEKAFELFRDM 192 (812)
Q Consensus 117 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 192 (812)
.+..++..+....+.++ ...|..|-..|.... +...|.+.|+..-+ .+..+|......|++..+++.|+.+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 34445555555555555 346777777888877 88899999997654 47788999999999999999999984332
Q ss_pred HhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHH
Q 040319 193 KRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLT 272 (812)
Q Consensus 193 ~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 272 (812)
.+......-...|...--.+...++...+..-++...+.. +.|...|..|..+|..+|+...|.++|.+....++..+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 1111111111122222233556777888888888777754 567888999999999999999999999888655554333
Q ss_pred H---HHHHHHhhCChhHHHHHhccCC
Q 040319 273 E---IIIAYMEFGYVDLAVEIFDKMP 295 (812)
Q Consensus 273 ~---li~~~~~~g~~~~A~~~f~~m~ 295 (812)
. .....+..|.+.+|...+..+.
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3 2334566788888888877664
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=5e-05 Score=84.20 Aligned_cols=610 Identities=13% Similarity=0.002 Sum_probs=295.4
Q ss_pred ccchHHHHHHHHccCChhhHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhh--HHHHH
Q 040319 33 TRFGNPLISAYLKLGHVADAYKIFYGLSS---PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPN-EHS--FVAIL 106 (812)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~--~~~ll 106 (812)
...|..|-..|+...+..-|.+.|+..-+ .+..++......|++..+++.|..+.-.--+. .|- ... |..+-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhcc
Confidence 34577777888777777788888876543 45567777888888888888888772221111 111 111 11111
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHH---HHHHHcCCChh
Q 040319 107 TACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTV---ISSVVNEFEYE 183 (812)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~ 183 (812)
-.+...++...+..-+....+.. +.|...|..|..+|.++| +...|.++|++...-++.+|-.- ...-+..|.+.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sG-ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESG-RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcC-ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHH
Confidence 22233444444444444443332 346677788888888888 88888888877765444333321 22334567788
Q ss_pred HHHHHHHHhHhcC-----CCCCCcchHHHHHHHHhcCCChHHHHHHHH-------HHHHhCCCCchhHHHHHHHHHHhcC
Q 040319 184 KAFELFRDMKRDN-----GFTVDYFTISTLLTACTGCFVLMEGRAVHA-------HAIRIGLGANLSVNNALIGFYTKCG 251 (812)
Q Consensus 184 ~A~~l~~~m~~~~-----g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~-------~~~~~g~~~~~~~~~~li~~~~~~g 251 (812)
+|++.+....... +..--..++..+...+...|-...+..+++ ..+......+...|-.+
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a-------- 719 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA-------- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH--------
Confidence 8877776652211 111111122222222222222222222222 22222212222222211
Q ss_pred ChHHHHHHHhcCCCCcchhHHHHHHHHH----hhCCh---h---HHHHHhccCC--CCCcccHHHHHHHHHh----CC--
Q 040319 252 RVKDVVALLERMPVMDIITLTEIIIAYM----EFGYV---D---LAVEIFDKMP--EKNSVSYNALLAGYCK----NG-- 313 (812)
Q Consensus 252 ~~~~A~~l~~~~~~~~~~~~~~li~~~~----~~g~~---~---~A~~~f~~m~--~~d~~~~~~li~~~~~----~g-- 313 (812)
.+|..+|-... |+.+ -..++..+. ..+.. | -+.+.+-.-. ..+..+|..++..|.+ .|
T Consensus 720 --sdac~~f~q~e-~~~v-n~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 720 --SDACYIFSQEE-PSIV-NMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred --hHHHHHHHHhc-ccch-HHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 12333333332 2211 111111111 11111 1 0001110000 0235667666655544 11
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcC-CCchhHHHHHHHHHHhcCCHHHHHH
Q 040319 314 --KAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGL-GSNDCIEAALLDMLTRCGRMADAEK 390 (812)
Q Consensus 314 --~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~~~g~~~~A~~ 390 (812)
+...|+..+.+.++. ..+...|-..+...+..|++ +...|..+...-. +....+|..+--.+.+..+++.|..
T Consensus 796 ~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnv--a~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNV--ACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred chhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchh--hhhhhhhhhhhhccccchhheeccceeEEecccHHHhhH
Confidence 234667777776653 33444444445555444444 3444555554433 3456677777778888999999999
Q ss_pred HHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHh---cccCCCCCChhhHHHHHHHhcCccchHH----------
Q 040319 391 MFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQS---QSEATVVPDEIALTSVLGVCGTLGFHEM---------- 456 (812)
Q Consensus 391 ~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~g~~p~~~t~~~ll~a~~~~~~~~~---------- 456 (812)
.|.....- +.|.+.|--..-.....|+.-+++.+|..- ....|-.|+-.-+.....-....|+.+.
T Consensus 872 af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 872 AFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred HHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 99887632 445777877666667778888888888661 1113344443333333333333443322
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CChhHHHHHH----HHHHhcCChHHHHHHH
Q 040319 457 GKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HDIVSWNGLI----AGHLLHRQGDEALAVW 527 (812)
Q Consensus 457 a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li----~~~~~~g~~~~A~~l~ 527 (812)
|.-..++... +.+.+...|.+.....-..+..++|.....+... -|...||.+. ..++..|.++.|..-+
T Consensus 952 As~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 952 ASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred hHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 1112222222 3455666777666666666777777666554321 4555555432 2333445555443332
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCc-chHHHHHHHHhhcCChHHHHHHHHhCC--
Q 040319 528 SSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWGFLEEAEETINNMP-- 604 (812)
Q Consensus 528 ~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~~~~~m~-- 604 (812)
...-. ..|...-..-++.+ . .|+++++.+.|++.....+-..+. .....+.-..+.++.-+.|..++-+..
T Consensus 1031 ~~~~~---evdEdi~gt~l~lF-f--kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1031 WKEWM---EVDEDIRGTDLTLF-F--KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred cccch---hHHHHHhhhhHHHH-H--HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 21110 11111111112222 2 577888888888776533333332 234445555667777777776544422
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---HccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 605 FQPKVSVWRALLDSCRIRLNTTIGKRVAKHI---LAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 605 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
.+|+..+...|-..+.-..+-.....+.+++ +..+--+-..-....-+|...||-.-..+++++.
T Consensus 1105 s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~ 1172 (1238)
T KOG1127|consen 1105 SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRA 1172 (1238)
T ss_pred CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3445444433333322222222222222222 2111111122334455666666666666666655
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.6e-07 Score=90.49 Aligned_cols=231 Identities=11% Similarity=-0.044 Sum_probs=155.2
Q ss_pred CHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeee-HHHHHH
Q 040319 333 TEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIW-TSMICG 411 (812)
Q Consensus 333 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~-~~li~~ 411 (812)
|-..-..+-+++.+.|.+..|+..+...++.-. -+.+|--|-..|.+..++..|..+|.+-....|..+|| .-+...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 444456777888999999999999888777654 44566678889999999999999998876455545554 445667
Q ss_pred HHHcCChhhHHHHHHHhcccCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHH
Q 040319 412 YARSGKPEHAILLFHQSQSEATVVPDE-IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMS 490 (812)
Q Consensus 412 ~~~~g~~~~A~~~~~~m~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 490 (812)
+-..++.++|+++|+...+ ..|+. ....++...+--.++++.|..++.++...|..
T Consensus 300 ~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-------------------- 356 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-------------------- 356 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--------------------
Confidence 7788999999999998876 33433 34444445555566677777777777766643
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 491 NAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 491 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
+...|+.+.-+|...++++-++.-|++.+..--.|+. -.|..+-..... .|+...|.+.|+-..
T Consensus 357 ------------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~--iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 357 ------------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT--IGDFNLAKRCFRLAL 422 (478)
T ss_pred ------------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe--ccchHHHHHHHHHHh
Confidence 3344445555555566666666666666655444554 234444444444 788888888887665
Q ss_pred hhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 569 TIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 569 ~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
. .-....+.++.|.-+-.|.|++++|..+++...
T Consensus 423 ~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 423 T--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred c--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 4 112235667777777777888888887777644
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=0.0018 Score=70.69 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=107.5
Q ss_pred cCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCC-----------CChhhHHHHHHH-HHhcC
Q 040319 11 CGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS-----------PNVVSFTSLISG-LAKLG 78 (812)
Q Consensus 11 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~-~~~~g 78 (812)
-|+.+.|.+-...+. +..+|..+.+++.+..+++-|.-.+..|.+ .|..--.+-+.+ -.+.|
T Consensus 741 iG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred eccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 355555554433332 334666677777777666666666655542 010001111111 13445
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHH
Q 040319 79 REEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLF 158 (812)
Q Consensus 79 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f 158 (812)
..++|+.+|.+-.+ |..+=+.+-..|.+++|.++-+.=-+..+..+-+-| ..-+...+ +.+.|.+.|
T Consensus 815 MlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y---A~~Lear~-Di~~Aleyy 881 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY---AKYLEARR-DIEAALEYY 881 (1416)
T ss_pred hHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHH---HHHHHhhc-cHHHHHHHH
Confidence 66666666665443 222223344456666665554332222211111111 11111223 444444444
Q ss_pred hcCCC-----------------------CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcC
Q 040319 159 DELPH-----------------------KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGC 215 (812)
Q Consensus 159 ~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~ 215 (812)
++... +|...|.---..+-..|+.+.|+.+|... +. |-++++..+-.
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-KD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-hh---------hhhheeeEeec
Confidence 43321 23333333334444566777777777665 32 45556666666
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 040319 216 FVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERM 263 (812)
Q Consensus 216 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 263 (812)
|+.++|-++-++ .-|....-.|.++|-..|++.+|...|.+.
T Consensus 952 Gk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 952 GKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777777666543 234455556777777777777777777655
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.2e-05 Score=75.44 Aligned_cols=382 Identities=12% Similarity=0.070 Sum_probs=168.9
Q ss_pred HHHHHHHHHhhCChhHHHHHhccCCCCCcccH-HHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccch
Q 040319 271 LTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSY-NALLAGYCKNG-KAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIM 348 (812)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~-~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 348 (812)
-.-++.+|...++-+.|.....+.+..-...- |.|+.-+.+.| +-.++.--+.+.+..-+- .+. .|.+..+.
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~----aL~-~i~~ll~l- 173 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM----ALQ-VIEALLEL- 173 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcch----HHH-HHHHHHHH-
Confidence 34488899999999999999999887444333 44444333333 222222222222221100 000 00000000
Q ss_pred hhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhc--CCHHHHHHHHhcC---CCCCCceeeeHHHHHHHHHcCChhhHHH
Q 040319 349 EAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRC--GRMADAEKMFYRW---PTDRDDSIIWTSMICGYARSGKPEHAIL 423 (812)
Q Consensus 349 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~ 423 (812)
.+.....--..|-+..+.|+.......+.+|+.+ ++-..|...|-.+ ..-++|+....++...+...|+.++|+.
T Consensus 174 ~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 174 GVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred hhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 0000001111112222334334444445555543 3333333333221 1124556667777777777777777777
Q ss_pred HHHHhcccCCCCCChhhHHHH-HHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCC
Q 040319 424 LFHQSQSEATVVPDEIALTSV-LGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSH 502 (812)
Q Consensus 424 ~~~~m~~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~ 502 (812)
.|++.+. +.|+.++-.-+ --.+...|+.+....+...+.... +-+...|-.-........+++.|+.+-++..+.
T Consensus 254 ~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 254 IFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 7777665 55554431111 111233444444444433333211 001111111112222334455555555444432
Q ss_pred C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcc
Q 040319 503 D---IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSE 578 (812)
Q Consensus 503 ~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 578 (812)
| +..+-.-...+.+.|++++|.-.|+..+. +.|.. ..|..|+..|.. .|...+|.-.-+...+- +..+..
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA--~~~~kEA~~~An~~~~~--~~~sA~ 403 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLA--QKRFKEANALANWTIRL--FQNSAR 403 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHh--hchHHHHHHHHHHHHHH--hhcchh
Confidence 2 22222222344555555555555555555 44433 555555555555 55555555444333221 112222
Q ss_pred hHHHHH-HHHhhcC-ChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 579 HYASLV-SVLGYWG-FLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 579 ~y~~li-~~l~~~g-~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
+.+-+. +.+.-.- --++|..++++.. ++|+ ....+.+...|...|..+.+...+++.+...|+ ...++.|++++.
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMR 482 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHH
Confidence 222221 1111111 1244555555532 4554 233344444455555555555555555555554 344555555555
Q ss_pred hCCCcchHHHHHHHH
Q 040319 655 SSGRWHNSELVREDM 669 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m 669 (812)
..+.+.+|.+.+...
T Consensus 483 A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKA 497 (564)
T ss_pred HhhhHHHHHHHHHHH
Confidence 555555555555543
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=1.5e-06 Score=87.98 Aligned_cols=248 Identities=13% Similarity=0.040 Sum_probs=131.5
Q ss_pred HHhcCCHHHHHHHHhcCCCCCC--ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHH
Q 040319 379 LTRCGRMADAEKMFYRWPTDRD--DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEM 456 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~ 456 (812)
+.-.|++..+..-.+ .....+ +.....-+..+|...|+++.++. ++.. +-.|.......+...+.....-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~--~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKK--SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-T--TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---Hhcc--CCChhHHHHHHHHHHHhCccchHH
Confidence 444577777775444 210111 12234445667777777665443 3332 225555554444444443233333
Q ss_pred HHHHHHHHHHhCCC-CchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040319 457 GKQIHSYALKTGFS-SDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASI 535 (812)
Q Consensus 457 a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 535 (812)
+..-+......... .+..+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+ +
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~ 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--I 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--c
Confidence 32222221111211 23333334445566677777777776654 3444445556666777777777777777766 3
Q ss_pred CCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHH
Q 040319 536 KPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWR 613 (812)
Q Consensus 536 ~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~ 613 (812)
..|.. ...+..++ +.+..-.+.+.+|.-+|+++. ..+++.+.+
T Consensus 161 ~eD~~-l~qLa~aw----------------------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~ln 205 (290)
T PF04733_consen 161 DEDSI-LTQLAEAW----------------------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLN 205 (290)
T ss_dssp SCCHH-HHHHHHHH----------------------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHH
T ss_pred CCcHH-HHHHHHHH----------------------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHH
Confidence 34432 22222222 222222234555655555543 345666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCc-chHHHHHHHHHh
Q 040319 614 ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRW-HNSELVREDMRE 671 (812)
Q Consensus 614 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~ 671 (812)
.+..++...|++++|+..++++++.+|+++.+...++-+..-.|+. +.+.+.+.+++.
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 7777777778888888888888888888888888888888888887 556677777654
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.55 E-value=1.1e-05 Score=87.67 Aligned_cols=261 Identities=11% Similarity=0.073 Sum_probs=151.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCCceee-eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchH
Q 040319 377 DMLTRCGRMADAEKMFYRWPTDRDDSII-WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHE 455 (812)
Q Consensus 377 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~ 455 (812)
..+...|++++|++.++.-...-.|..+ .......+.+.|+.++|..+|+.+.. ..|+...|-..+..|.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~---rNPdn~~Yy~~L~~~~g~~~-- 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID---RNPDNYDYYRGLEEALGLQL-- 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHhhhc--
Confidence 3445667777777776654422222333 33344566666777777777777665 45666655444433321000
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 040319 456 MGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQG-DEALAVWSSMEK 532 (812)
Q Consensus 456 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 532 (812)
++ ...+.+....+++++.. |.......+.-.+.....+ ..+...+..++.
T Consensus 87 ------------~~---------------~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~ 139 (517)
T PF12569_consen 87 ------------QL---------------SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR 139 (517)
T ss_pred ------------cc---------------ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh
Confidence 00 00122333333333322 1111111111111111122 244555666777
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc-------------CccCCc--chHHHHHHHHhhcCChHHHH
Q 040319 533 ASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY-------------NIEPTS--EHYASLVSVLGYWGFLEEAE 597 (812)
Q Consensus 533 ~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~--~~y~~li~~l~~~g~~~~A~ 597 (812)
.|++| +|..|-.-|.. ....+-..+++....... .-.|+. .++.-+...|.+.|++++|+
T Consensus 140 KgvPs---lF~~lk~Ly~d--~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al 214 (517)
T PF12569_consen 140 KGVPS---LFSNLKPLYKD--PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL 214 (517)
T ss_pred cCCch---HHHHHHHHHcC--hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 77654 34444444444 444444444444332210 112333 24456678888999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 598 ETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 598 ~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
+++++.. ..|. +-.|..-...+.+.|++++|...++.+.++++.|--...-.+..+.++|+.++|.++.......+.
T Consensus 215 ~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 215 EYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999754 6675 446666667788999999999999999999999888888889999999999999999988865554
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.55 E-value=6.6e-06 Score=76.16 Aligned_cols=189 Identities=10% Similarity=-0.023 Sum_probs=124.2
Q ss_pred HHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCC
Q 040319 478 SMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTN 553 (812)
Q Consensus 478 ~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~ 553 (812)
.|.-.|...|+...|..-+++..+ .+..+|..+...|.+.|+.+.|.+-|++.++ +.|+. ...|..-.-++.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~-- 115 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA-- 115 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh--
Confidence 355567777777777777776655 2345677777777777777777777777777 66665 333444443444
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
.|.+++|...|+....+....--..+|..++-+-.++|+.+.|.+.+++.. ..| .......+.......|+.-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 567777777777776643333346677777777777777777777777644 444 345556666666677777777777
Q ss_pred HHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 632 AKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 632 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+++...-.+-......+.+.+-...|+-+.|.+.-..+.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 777766665556666666677777777777766655553
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=5.4e-05 Score=81.94 Aligned_cols=404 Identities=12% Similarity=0.075 Sum_probs=230.8
Q ss_pred CchHHHHHHHH--HhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCC--------CCCC
Q 040319 132 DSVFVTNALMG--LYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNG--------FTVD 201 (812)
Q Consensus 132 ~~~~~~~~li~--~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g--------~~pd 201 (812)
-|..+-.++++ .|.-.| +++.|.+-.+.+. +...|..|.+.+++..+++-|.-.+-.|....| -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG-~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIG-SMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEec-cHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 35666666664 577889 9999888777665 456799999999999999998888877732222 1232
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-cchhHHHHHHHHHh
Q 040319 202 YFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVM-DIITLTEIIIAYME 280 (812)
Q Consensus 202 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~~~~~li~~~~~ 280 (812)
.+=.-+.-.....|.+++|+.++.+..+. ..|=..|-..|.+++|.++-+.-..- =..||..-..-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22222222345678888888888888763 23445677788899888876544322 22566666777777
Q ss_pred hCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHH-HHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhh
Q 040319 281 FGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALG-LFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGF 359 (812)
Q Consensus 281 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 359 (812)
.++++.|++.|++...+--.....|. +...+++ +.+.+. |...|.---.-.-+.|+.+.|..++..
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~-------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLK-------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHH-------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHH
Confidence 88888888888876432111111111 1111111 111111 222222222333455666666666665
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh
Q 040319 360 VMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI 439 (812)
Q Consensus 360 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 439 (812)
+.. |-+++...+-.|+.++|-++-++-. |......+...|-..|++.+|+..|.+.+.
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~esg----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--------- 995 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEESG----DKAACYHLARMYENDGDVVKAVKFFTRAQA--------- 995 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhcc----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------
Confidence 543 2345555566677777777765533 244555667777777888888877766543
Q ss_pred hHHHHHHHhcCccc---------------hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---
Q 040319 440 ALTSVLGVCGTLGF---------------HEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--- 501 (812)
Q Consensus 440 t~~~ll~a~~~~~~---------------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--- 501 (812)
|...|+.|...+- .-.|-.+++ +.|.. ..--+-.|-|.|.+.+|+++-=+-.+
T Consensus 996 -fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 996 -FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred -HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 4444444433221 111112221 11111 11234567788888887765322111
Q ss_pred -----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 502 -----------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 502 -----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
.|+...+--..-++.+.++++|..++-..++ |...+.-|.. . .+.-..++-+.|.-.
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~--~-nv~vtee~aE~mTp~ 1134 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKN--R-NVRVTEEFAELMTPT 1134 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhc--C-CCchhHHHHHhcCcC
Confidence 4455555556666778888888887766554 4445555544 2 233333333344321
Q ss_pred cCccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 571 YNIEPT----SEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 571 ~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
..-.|+ ......+.+++.++|.+.-|-+-|.+..
T Consensus 1135 Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1135 KDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 112222 3456677888888888888777776543
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.53 E-value=0.00016 Score=76.84 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=59.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-FQPKVS-VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
++-.++..+-+.|+++.|+..++..- -.|..+ .|..=...+...|+++.|-..++.+.++|-.|......-++-..++
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 34456666777777777777777643 344433 2222223456667777777777777777765555444566666677
Q ss_pred CCcchHHHHHHHHHhCCC
Q 040319 657 GRWHNSELVREDMREKGF 674 (812)
Q Consensus 657 g~~~~a~~~~~~m~~~g~ 674 (812)
.+.++|.++..+....|.
T Consensus 453 n~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cccHHHHHHHHHhhhccc
Confidence 777777777776655543
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=2e-06 Score=89.83 Aligned_cols=213 Identities=12% Similarity=0.080 Sum_probs=152.8
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWS 528 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 528 (812)
|++..|.-.++..++.. +-+...|--|.-.-+..++=..|...+.+..+ .|....-+|...|...|.-.+|+..++
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33444444444444432 22445555555555555555566666655544 445666667777888888888888887
Q ss_pred HHHHCCCCCCHHHHHHH------H--HHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHH
Q 040319 529 SMEKASIKPDAITFVLI------I--SAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETI 600 (812)
Q Consensus 529 ~m~~~g~~pd~~t~~~l------l--~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~ 600 (812)
.=+. .+|..+-...- . ..+.+ ........++|-.+....+.++|++.+.+|.-+|--.|.+++|.+-|
T Consensus 378 ~Wi~--~~p~y~~l~~a~~~~~~~~~~s~~~--~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 378 KWIR--NKPKYVHLVSAGENEDFENTKSFLD--SSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHH--hCccchhccccCccccccCCcCCCC--HHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7665 22221110000 0 11222 34455666777777666777789999999999999999999999999
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 601 NNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 601 ~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+... .+| |..+|+-|........+-++|..+|.+++++.|.-..+...|+-.|...|.++||.+.+-..
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9965 788 68899999999999999999999999999999999999999999999999999999887655
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.47 E-value=3.9e-05 Score=83.53 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=91.2
Q ss_pred HHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceee-eHHHHHHHHHc-----
Q 040319 342 NACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSII-WTSMICGYARS----- 415 (812)
Q Consensus 342 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~----- 415 (812)
..+...|+.+.|.+.+..-.+ -+.....+.......|.+.|+.++|..++..+....|+-.. |..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 344677999999988865333 33445667778889999999999999999998744444444 44455554222
Q ss_pred CChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcC-ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHH
Q 040319 416 GKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGT-LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIK 494 (812)
Q Consensus 416 g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 494 (812)
...+...++|+++.. .-|.......+.-.+.. ..--..+..+.....+.|+++ +++.|-..|....+.+-..+
T Consensus 91 ~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 246677888888876 33555444433322222 222345556666667777653 55566666665544444444
Q ss_pred HHc
Q 040319 495 AFN 497 (812)
Q Consensus 495 ~f~ 497 (812)
++.
T Consensus 165 l~~ 167 (517)
T PF12569_consen 165 LVE 167 (517)
T ss_pred HHH
Confidence 433
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=1e-05 Score=80.56 Aligned_cols=181 Identities=11% Similarity=0.003 Sum_probs=117.5
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----H
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD-I---VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI----T 541 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t 541 (812)
....+-.+...|.+.|++++|...|+++.. |+ . ..|..+...|...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 455566677777788888888888876654 32 1 3566777778888888888888888877 555432 3
Q ss_pred HHHHHHHhcCC------CCchHHHHHHHHHHhhhhcCccCCcc-hHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 040319 542 FVLIISAYRYT------NLNLVDSCRKLFLSMKTIYNIEPTSE-HYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRA 614 (812)
Q Consensus 542 ~~~ll~a~~~~------~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ 614 (812)
+..+..++... ..|+.++|.+.|+.+.+. .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333344330 016677777777777652 34322 12111111 1111100 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+...+...|+.+.|...++++++..|++ +.++..++.+|.+.|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556788899999999999999987765 468899999999999999999999888654
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=2.7e-06 Score=76.80 Aligned_cols=121 Identities=7% Similarity=-0.060 Sum_probs=82.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhC
Q 040319 525 AVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNM 603 (812)
Q Consensus 525 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m 603 (812)
.+|++.++ +.|+. +.....++.. .|++++|...|+.... +.| +...|..+..++.+.|++++|...+++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~--~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQ--EGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHH--cCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45556655 55664 2233344455 7777777777777664 334 3666777777777777777777777775
Q ss_pred C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 604 P-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 604 ~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
. ..| +...|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 445 56677777777777888888888888888888888877777666543
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=3e-07 Score=58.87 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=26.4
Q ss_pred CccCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 572 NIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 572 ~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.41 E-value=0.00011 Score=78.51 Aligned_cols=294 Identities=10% Similarity=-0.032 Sum_probs=161.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC-CCceee---eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHH---H
Q 040319 373 AALLDMLTRCGRMADAEKMFYRWPTD-RDDSII---WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTS---V 444 (812)
Q Consensus 373 ~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~---l 444 (812)
..+...|...|+.+++.+.+...... +.+... .......+...|++++|...+++... ..|+.. .+.. .
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~P~~~~a~~~~~~~ 86 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD---DYPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHhHHH
Confidence 33444455556666655554443211 111111 11223345667888888888888776 344443 2221 1
Q ss_pred HHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChH
Q 040319 445 LGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGD 521 (812)
Q Consensus 445 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 521 (812)
.......+..+.+.+.... .....+........+...+...|++++|...+++..+ .+...+..+...|...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 1111223444444444433 1111122334445566778888888888888887654 44567777888888888888
Q ss_pred HHHHHHHHHHHCCC-CCCHH--HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchH-H--HHHHHHhhcCChHH
Q 040319 522 EALAVWSSMEKASI-KPDAI--TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHY-A--SLVSVLGYWGFLEE 595 (812)
Q Consensus 522 ~A~~l~~~m~~~g~-~pd~~--t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~--~li~~l~~~g~~~~ 595 (812)
+|+..+++.....- .|+.. .+..+...+.. .|++++|..+++.........+..... + .+..-+...|..+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~--~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE--RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH--CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 88888888877321 12322 23345555666 888888888888875311111111111 1 22333334443322
Q ss_pred HHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-C--------CCCchHHHHHhhhhhCCCc
Q 040319 596 AEET---INNM-PFQP---KVSVWRALLDSCRIRLNTTIGKRVAKHILAME-P--------QDPATYILVSNLYSSSGRW 659 (812)
Q Consensus 596 A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~y~~~g~~ 659 (812)
+... .... +..| ..........++...|+.+.|....+.+.... + .........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111 1101 12222344555677888888888887775522 1 1345667888899999999
Q ss_pred chHHHHHHHHHhC
Q 040319 660 HNSELVREDMREK 672 (812)
Q Consensus 660 ~~a~~~~~~m~~~ 672 (812)
++|.+.+......
T Consensus 324 ~~A~~~L~~al~~ 336 (355)
T cd05804 324 ATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877543
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.40 E-value=2.1e-05 Score=79.65 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=29.9
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcc
Q 040319 378 MLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQS 430 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (812)
+|...|++++|.+++.... +.......+..|.+.++++.|.+.++.|.+
T Consensus 111 i~~~~~~~~~AL~~l~~~~----~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKGG----SLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHCCCCHHHHHHCCCTTTT----CHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHccC----cccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666666666665431 244445556677777777777777777765
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=9.2e-06 Score=73.29 Aligned_cols=105 Identities=11% Similarity=0.015 Sum_probs=90.6
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
.+|+...+ +.|+ ++..+...+...|++++|.+.++... ..| +...|..+..+|...|+++.|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 3344 46678889999999999999999865 556 67899999999999999999999999999999
Q ss_pred CCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 640 PQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 640 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
|+++.++..++.+|...|++++|...++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.36 E-value=5e-07 Score=57.82 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=21.7
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccC
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKM 499 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 499 (812)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666666
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.00012 Score=76.17 Aligned_cols=214 Identities=13% Similarity=0.051 Sum_probs=143.4
Q ss_pred HHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCCh----------hHHHHHHH
Q 040319 443 SVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDI----------VSWNGLIA 512 (812)
Q Consensus 443 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~----------~~~~~li~ 512 (812)
.+.++.-+..+++.+.+-+...+... .+..-++.....|...|........-+...+..- .+...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34445555566677777777666654 4555666677777777777766655444333111 12222444
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCc-chHHHHHHHHhhcC
Q 040319 513 GHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWG 591 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g 591 (812)
+|.+.++++.|+..|.+.+..-..||..+ . ....+++.+..+...- +.|.. .---.=...+.+.|
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~--lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------K--LKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------H--HHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhcc
Confidence 66677788888888888766545554322 1 2334444444333321 33432 11111256677889
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 592 FLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 592 ~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
++.+|+..+.++. ..| |...|.....++.+.|++..|..-++..++++|+....|..-+-++....+|++|.+.+.+-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998865 456 67788888888889999999999999999999999999999999999999999999998886
Q ss_pred HhC
Q 040319 670 REK 672 (812)
Q Consensus 670 ~~~ 672 (812)
.+.
T Consensus 453 le~ 455 (539)
T KOG0548|consen 453 LEL 455 (539)
T ss_pred Hhc
Confidence 543
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.33 E-value=1.4e-05 Score=76.42 Aligned_cols=118 Identities=9% Similarity=0.053 Sum_probs=97.9
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCC--HHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDS-CRIRLN--TTIG 628 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~-~~~~~~--~~~a 628 (812)
.+..+++...++...+. -+.+...|..+...|...|++++|.+.+++.. ..| +..++..+..+ +...|+ .+.|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56677777777776652 23458889999999999999999999999865 666 57778777776 466676 5999
Q ss_pred HHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 629 KRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
..+++++++++|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999986643
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.32 E-value=0.00024 Score=75.95 Aligned_cols=268 Identities=11% Similarity=-0.031 Sum_probs=170.6
Q ss_pred CceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHH-HHHhcCccchHHHHHHHHHHHHhCCCCchhHHH-
Q 040319 400 DDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSV-LGVCGTLGFHEMGKQIHSYALKTGFSSDLGVAN- 477 (812)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~- 477 (812)
+....|..+...+...|+.+.+...+.+........++......+ ...+...|+++.+..++..+.+.. +.+...+.
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 335556667777777888888777776665422223333222222 223466789999999999988763 33444444
Q ss_pred --HHHHHhhhcCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcC
Q 040319 478 --SMVSMYFKCCNMSNAIKAFNKMPS--HD-IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRY 551 (812)
Q Consensus 478 --~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~ 551 (812)
.+.......|..+.+.+.+..... |+ ...+..+...+...|++++|.+.+++..+ ..|+. ..+..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHH
Confidence 233333345667777777765333 22 23444566788899999999999999999 66776 455666667777
Q ss_pred CCCchHHHHHHHHHHhhhhcCccCCc--chHHHHHHHHhhcCChHHHHHHHHhCC-CCC--CHHHHH----HHHHHHHhc
Q 040319 552 TNLNLVDSCRKLFLSMKTIYNIEPTS--EHYASLVSVLGYWGFLEEAEETINNMP-FQP--KVSVWR----ALLDSCRIR 622 (812)
Q Consensus 552 ~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p--~~~~~~----~ll~~~~~~ 622 (812)
.|++++|..+++.........|+. ..|..+...+...|++++|+..+++.. ..| ...... .++.-....
T Consensus 161 --~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 161 --QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred --cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 999999999999887632222332 346678899999999999999999853 233 222111 333344455
Q ss_pred CCHHHHHHH---HHHHHccCCC--CCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 623 LNTTIGKRV---AKHILAMEPQ--DPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 623 ~~~~~a~~~---~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
|....+.+. ........|. ....-...+.++...|++++|.+..+.++..
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 654444443 2222111122 1222346778889999999999999988653
No 107
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.31 E-value=8.2e-06 Score=72.13 Aligned_cols=118 Identities=7% Similarity=0.005 Sum_probs=97.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
.+..-.+...+...|++++|..+|+-.. ..| +..-|..|...|...|++++|..++.++..++|+|+.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4555667777889999999999999865 667 67789999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 040319 655 SSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECL 717 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 717 (812)
..|+.++|.+-|+.... |. ..+|+-.+|..+.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~----------~~-------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR----------IC-------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHH----------Hh-------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999997643 21 145666777666666555543
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=0.013 Score=71.20 Aligned_cols=366 Identities=11% Similarity=0.010 Sum_probs=194.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCcchh--HHHHHHHHHhhCChhHHHHHhccCCC----CCcccHHHHHHHHHhCCChHH
Q 040319 244 IGFYTKCGRVKDVVALLERMPVMDIIT--LTEIIIAYMEFGYVDLAVEIFDKMPE----KNSVSYNALLAGYCKNGKAME 317 (812)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~ 317 (812)
...|...|++.+|..........+... .......+...|+.+.+...++.++. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344566677776666555554332211 11122344456777777777776642 222223333445566778888
Q ss_pred HHHHHHHHHHcCCCCC---HhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 040319 318 ALGLFVKLLEEGLVLT---EFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYR 394 (812)
Q Consensus 318 A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 394 (812)
|..++......--..+ ...... .....+...+...|++++|...+++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~------------------------------~~~~~~a~~~~~~g~~~~A~~~~~~ 477 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQA------------------------------EFNALRAQVAINDGDPEEAERLAEL 477 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHH------------------------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8777776644210000 000000 0001112233455666666666554
Q ss_pred CCCCC--Cc----eeeeHHHHHHHHHcCChhhHHHHHHHhccc---CCC-CCChhhHHHHHHHhcCccchHHHHHHHHHH
Q 040319 395 WPTDR--DD----SIIWTSMICGYARSGKPEHAILLFHQSQSE---ATV-VPDEIALTSVLGVCGTLGFHEMGKQIHSYA 464 (812)
Q Consensus 395 ~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 464 (812)
..... .+ ...++.+...+...|++++|...+.+.... .|- .+...++..+...+...|+++.|...+...
T Consensus 478 al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 478 ALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 32111 10 112334444556677777777666665430 010 001122333344556667777777766655
Q ss_pred HH----hCCC---CchhHHHHHHHHhhhcCCHHHHHHHHccCCC------C--ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 040319 465 LK----TGFS---SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS------H--DIVSWNGLIAGHLLHRQGDEALAVWSS 529 (812)
Q Consensus 465 ~~----~g~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 529 (812)
.. .+.. .....+..+...+...|++++|...+.+... + ....+..+...+...|++++|.+.+++
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43 2211 1223344556667777999999888776532 1 123444566677889999999999888
Q ss_pred HHHCCCC-CCHHHHH-----HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC--cchHHHHHHHHhhcCChHHHHHHHH
Q 040319 530 MEKASIK-PDAITFV-----LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--SEHYASLVSVLGYWGFLEEAEETIN 601 (812)
Q Consensus 530 m~~~g~~-pd~~t~~-----~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~ 601 (812)
.....-. .....+. ..+..+.. .|..+.|.+.+........-.+. ...+..+..++...|+.++|...++
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 715 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQM--TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILE 715 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHH--CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7552111 1111110 11123334 68888888887765431100010 1113456777888899999988887
Q ss_pred hCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 602 NMP-------FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 602 ~m~-------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
+.. ..++ ..+...+..++...|+.+.|...+++++++...
T Consensus 716 ~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 716 ELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 753 1222 234555556688889999999999999887644
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=3.8e-05 Score=88.02 Aligned_cols=199 Identities=11% Similarity=0.067 Sum_probs=168.8
Q ss_pred CCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 470 SSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 470 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
+.+...|-..|......+++++|++++++... .-...|.++++.....|.-+...++|+++.+ +.-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 44667777888888899999999999988754 2246899999999999988999999999988 4444567
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC---HHHHHHHHH
Q 040319 542 FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK---VSVWRALLD 617 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~ 617 (812)
|..|+.-|.. .+..++|.++++.|.++++ .....|..+++.+.+..+-+.|..++++.. .-|. .-...-.+.
T Consensus 1533 ~~~L~~iy~k--~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1533 HLKLLGIYEK--SEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHH--hhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 8888888988 9999999999999998766 678899999999999999999999998843 3343 344555566
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 618 SCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
.-.++|+.+.|+.+++-++.-.|.-...|..++++-.+.|+.+.++.++++.-..++
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 677899999999999999999999999999999999999999999999999876655
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=6.7e-05 Score=71.84 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=107.2
Q ss_pred cCCHHHHHHHHccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040319 486 CCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLF 564 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~ 564 (812)
.+++..++.+.+..+. .+..+.+.......+.|++++|++-|+...+-|---....|+..+.-|. .|+.+.|.++.
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~---~~qyasALk~i 201 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS---SRQYASALKHI 201 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh---hhhHHHHHHHH
Confidence 3445555555555542 3344444444444455666666666655555322222344554444333 35555555555
Q ss_pred HHhhhhcCcc---------------------CCcchHHHHHH-------HHhhcCChHHHHHHHHhCC----CCCCHHHH
Q 040319 565 LSMKTIYNIE---------------------PTSEHYASLVS-------VLGYWGFLEEAEETINNMP----FQPKVSVW 612 (812)
Q Consensus 565 ~~m~~~~~~~---------------------p~~~~y~~li~-------~l~~~g~~~~A~~~~~~m~----~~p~~~~~ 612 (812)
.++.+ .|++ |-.-|-+.++. .+.+.|+++.|.+.+..|| .+.|++|.
T Consensus 202 SEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 202 SEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 55543 2222 11223344443 4567899999999999998 34567776
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
..+.-. -..++...+.+-..-++++.|--+.++..+.-+|++..-++-|..+.-+
T Consensus 281 HN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 281 HNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 554322 2346666677777778899998888999999999999999999888754
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=4.3e-05 Score=87.57 Aligned_cols=242 Identities=14% Similarity=0.116 Sum_probs=176.3
Q ss_pred HHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh-----hhHHHHHHHhcCccchHHHHHHH
Q 040319 387 DAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE-----IALTSVLGVCGTLGFHEMGKQIH 461 (812)
Q Consensus 387 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~ 461 (812)
.|...-+.+...+++...|-..|....+.++.++|.+++++... .+.+.+ -.|.++++.--..|.-+...+++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~--tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALK--TINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhh--hCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34444444554566778899999999999999999999999875 243332 24666666555566777888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 462 SYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 462 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
+++.+.. ....+|..|...|.+.++.++|-++|+.|.+ .....|...+..+.++.+.+.|..++.+.++ .-|-
T Consensus 1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk 1596 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPK 1596 (1710)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcch
Confidence 8888743 3456788899999999999999999999976 3667899999999999999999999999988 5665
Q ss_pred --HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCC--HHH
Q 040319 539 --AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP---FQPK--VSV 611 (812)
Q Consensus 539 --~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~---~~p~--~~~ 611 (812)
++-+.+-..-+. .+.|+.+.|+.+|+.....| +...+.|+.+|++=.+.|..+.+..+|++.. +.|. -..
T Consensus 1597 ~eHv~~IskfAqLE-Fk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKff 1673 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLE-FKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFF 1673 (1710)
T ss_pred hhhHHHHHHHHHHH-hhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHH
Confidence 333332221111 13788899999999887643 3457889999999999999888888888853 3342 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 612 WRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 612 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
|.-.|.--..+||-+..+.+=.++.+
T Consensus 1674 fKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1674 FKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 66777777777777666665444443
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.0004 Score=66.71 Aligned_cols=208 Identities=11% Similarity=-0.003 Sum_probs=106.3
Q ss_pred hCChhHHHHHhccCCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHhHHHHHHHHhccchhhhhHHHHHh
Q 040319 281 FGYVDLAVEIFDKMPE-KNSVSYNALLAGYCKNGKAMEALGLFVKLLEE-GLVLTEFTLTSVVNACGLIMEAKLSEQIHG 358 (812)
Q Consensus 281 ~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 358 (812)
.+++..+..+.++.+. .+..+.+.......+.|+++.|++-|+...+- |..| ...|+..+. ..+.++.+.|.....
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHH
Confidence 4555555556666663 44444444444455666777777777666553 3333 344444432 334566666666666
Q ss_pred hHHHhcCCCchhHHH----HHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCC
Q 040319 359 FVMKFGLGSNDCIEA----ALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATV 434 (812)
Q Consensus 359 ~~~~~g~~~~~~~~~----~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~ 434 (812)
+++..|+...+...- -.++.-. .|+ -..+-.+.. +..+|.-...+.+.++++.|.+.+..|.-+..-
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~lh~Sal-----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~ 273 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLVLHQSAL-----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE 273 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhc-ccc---hHHHHHHHH-----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence 666666543222110 0000000 000 000000000 122333344456677777777777777654445
Q ss_pred CCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC
Q 040319 435 VPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS 501 (812)
Q Consensus 435 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~ 501 (812)
..|.+|+..+.-.-. .+++..+..-+..+...+. ....++..++-.|+|..-++-|..++.+-..
T Consensus 274 elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 274 ELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred cCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcc
Confidence 566777655432111 1233344444444444332 3456777778889999889988888876543
No 113
>PLN02789 farnesyltranstransferase
Probab=98.23 E-value=0.00013 Score=74.99 Aligned_cols=168 Identities=8% Similarity=0.018 Sum_probs=105.2
Q ss_pred HhhhcC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCC
Q 040319 482 MYFKCC-NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQG--DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNL 554 (812)
Q Consensus 482 ~y~k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 554 (812)
++.+.| ++++++..++++.+ ++...|+.....+.+.|+. ++++.+++++++ ..|.. .+|....-++.. .
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~--l 155 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRT--L 155 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHH--h
Confidence 333444 35666666655443 3445566554444445542 556677777766 55544 455555555555 6
Q ss_pred chHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhc---CC----hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc--
Q 040319 555 NLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYW---GF----LEEAEETINN-MPFQP-KVSVWRALLDSCRIR-- 622 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~---g~----~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~-- 622 (812)
|+++++++.++.+.+. .| +...|+....++.+. |. .++++++..+ +...| |...|+-+.+.+...
T Consensus 156 ~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~ 232 (320)
T PLN02789 156 GGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE 232 (320)
T ss_pred hhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc
Confidence 6777777777776652 22 244455554444433 22 2456677644 44566 678999998888774
Q ss_pred --CCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 623 --LNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 623 --~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
++...|...+.++++.+|.++.+...|+++|+..
T Consensus 233 ~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 233 ALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 3446688888999999999999999999999864
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=4.4e-05 Score=80.14 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=87.9
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 040319 460 IHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIK 536 (812)
Q Consensus 460 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 536 (812)
+++.....+...|+.+...|.-.|--.|++++|...|+.... .|...||-|...++...+.++|+..|++.++ ++
T Consensus 417 fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--Lq 494 (579)
T KOG1125|consen 417 FLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQ 494 (579)
T ss_pred HHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cC
Confidence 344455566668889999999999999999999999998765 5678999999999999999999999999999 99
Q ss_pred CCHH-HHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 537 PDAI-TFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 537 pd~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
|+-+ ....|.-+|.. .|.+++|.++|-+...
T Consensus 495 P~yVR~RyNlgIS~mN--lG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMN--LGAYKEAVKHLLEALS 526 (579)
T ss_pred CCeeeeehhhhhhhhh--hhhHHHHHHHHHHHHH
Confidence 9973 33445557777 9999999998866543
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.17 E-value=0.037 Score=67.39 Aligned_cols=87 Identities=14% Similarity=0.234 Sum_probs=52.8
Q ss_pred HHhhhcCCHHHHHHHHccCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPSHDI-------VSWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKPDA-ITFVLIISA 548 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a 548 (812)
..+...|+.+.|...+.....+.. ..+..+..++...|++++|...+++.... |..++. .+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 344557788888877765544221 11345566677788888888888877652 222222 233444445
Q ss_pred hcCCCCchHHHHHHHHHHhhh
Q 040319 549 YRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 549 ~~~~~~g~~~~a~~~~~~m~~ 569 (812)
+.. .|+.++|...+.+..+
T Consensus 741 ~~~--~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 741 YWQ--QGRKSEAQRVLLEALK 759 (903)
T ss_pred HHH--cCCHHHHHHHHHHHHH
Confidence 555 7777777777777654
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=3.9e-05 Score=82.55 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=116.9
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS 547 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 547 (812)
+++|-...-..+.+.+.++|-...|..+|++. ..|.-.|..|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 44555566667788888888888888888875 5677788888888888888888888777 6788888888888
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINN-MPFQP-KVSVWRALLDSCRIRLNT 625 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~~~ 625 (812)
.... ...+++|+++++....+.. ..+.....+.++++++.+.++. +.+.| -..+|-.+..+.-+.++.
T Consensus 466 v~~d--~s~yEkawElsn~~sarA~--------r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHD--PSLYEKAWELSNYISARAQ--------RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccC--hHHHHHHHHHhhhhhHHHH--------HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 8776 7778888888776544200 0111112234555555555544 23334 334555555555555555
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 626 TIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 626 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+.|..+|-....++|++...++.++-.|.+.|+-.+|....++.-
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555443
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.14 E-value=0.00011 Score=70.19 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=110.1
Q ss_pred HHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~ 558 (812)
+-.|.+.|+++......+.+..|. ..|...++.++++..+++.++ ..|+. ..|..+...+.. .|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~--~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLW--RNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHH--CCCHH
Confidence 456777777777655443332221 011225666778888888777 56665 456666667777 88899
Q ss_pred HHHHHHHHhhhhcCccC-CcchHHHHHHHH-hhcCC--hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 040319 559 SCRKLFLSMKTIYNIEP-TSEHYASLVSVL-GYWGF--LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVA 632 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p-~~~~y~~li~~l-~~~g~--~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 632 (812)
+|...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++.. ..| +..++..+...+...|++++|+..+
T Consensus 91 ~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99998888776 445 477788888864 67777 489999998865 666 5677777778899999999999999
Q ss_pred HHHHccCCCCCchHHH
Q 040319 633 KHILAMEPQDPATYIL 648 (812)
Q Consensus 633 ~~~~~~~p~~~~~~~~ 648 (812)
+++++++|.+..-+..
T Consensus 168 ~~aL~l~~~~~~r~~~ 183 (198)
T PRK10370 168 QKVLDLNSPRVNRTQL 183 (198)
T ss_pred HHHHhhCCCCccHHHH
Confidence 9999999886665543
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4e-06 Score=54.63 Aligned_cols=35 Identities=34% Similarity=0.528 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA 539 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 539 (812)
.+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.13 E-value=0.029 Score=62.72 Aligned_cols=168 Identities=10% Similarity=0.034 Sum_probs=94.9
Q ss_pred HHHHHHhcCccchHHH---HHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChh--HHHH-HHHHHH
Q 040319 442 TSVLGVCGTLGFHEMG---KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIV--SWNG-LIAGHL 515 (812)
Q Consensus 442 ~~ll~a~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~--~~~~-li~~~~ 515 (812)
+.++..|.+.++.... .-+++..... -+.|..+--.||..|.-.|-+..|..+|..+.-+++. |..- +..-+.
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 4566777777765532 2233332221 1335555567899999999999999999988754432 2222 234445
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHH---HHHhhhhcCccCCcchHHHHHHHHhhc
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKL---FLSMKTIYNIEPTSEHYASLVSVLGYW 590 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~---~~~m~~~~~~~p~~~~y~~li~~l~~~ 590 (812)
..|++..+...+++..+ +--+. .|--.+..||.+ |.+.+-.+. =+++.. ..-.-...+=+..++.+...
T Consensus 519 t~g~~~~~s~~~~~~lk--fy~~~~kE~~eyI~~AYr~---g~ySkI~em~~fr~rL~~-S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHLK--FYDSSLKETPEYIALAYRR---GAYSKIPEMLAFRDRLMH-SLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred hcccchhHHHHHHHHHH--HHhhhhhhhHHHHHHHHHc---CchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 56777777777766655 21111 233334445544 444443332 222221 00001122335567888999
Q ss_pred CChHHHHHHHHhCCCCC--CHHHHHHHH
Q 040319 591 GFLEEAEETINNMPFQP--KVSVWRALL 616 (812)
Q Consensus 591 g~~~~A~~~~~~m~~~p--~~~~~~~ll 616 (812)
++.++-...+..|..+| |..-|..|.
T Consensus 593 ~~~~q~~~~~~~~~l~~~e~~I~w~~L~ 620 (932)
T KOG2053|consen 593 DRGTQLLKLLESMKLPPSEDRIQWVSLS 620 (932)
T ss_pred CcHHHHHHHHhccccCcchhhccccccc
Confidence 99999999998887555 445555553
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.07 E-value=0.00012 Score=72.84 Aligned_cols=181 Identities=9% Similarity=-0.018 Sum_probs=127.9
Q ss_pred hhhHHHHHHHhcCccchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CCh-h---HHHH
Q 040319 438 EIALTSVLGVCGTLGFHEMGKQIHSYALKTGFS-S-DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDI-V---SWNG 509 (812)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~-~---~~~~ 509 (812)
...+-.....+...|+++.|...+..+.+.... | ....+..+...|.+.|++++|...|+++.+ |+. . .|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 345566667788899999999999998875422 1 124667788999999999999999998865 322 2 4666
Q ss_pred HHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHH
Q 040319 510 LIAGHLLH--------RQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYA 581 (812)
Q Consensus 510 li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 581 (812)
+..++.+. |+.++|++.|+++.+ ..|+..-....+.. .+.... ... ....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~-----~~~~~~------~~~---------~~~~ 170 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKR-----MDYLRN------RLA---------GKEL 170 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHH-----HHHHHH------HHH---------HHHH
Confidence 66667654 788999999999998 67876432222211 111100 000 1123
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP-F---QP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~-~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
.+.+.+.+.|++++|...+++.. . .| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56778899999999999888753 2 23 356888899999999999999998888766555
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=8.6e-05 Score=79.99 Aligned_cols=218 Identities=17% Similarity=0.169 Sum_probs=173.5
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHH
Q 040319 364 GLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTS 443 (812)
Q Consensus 364 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ 443 (812)
+++|--..-..+...+.++|-..+|..+|+++. .|...|-.|...|+..+|..+..+-.+ -+||..-|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHH
Confidence 455666666778889999999999999998855 677789999999999999998887765 6788888888
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCCh
Q 040319 444 VLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQG 520 (812)
Q Consensus 444 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 520 (812)
+.+...+..-++.|.++.++.-.. .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.++.
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 888888888888888877654321 112222233447899999999986544 3457899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHH
Q 040319 521 DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEET 599 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~ 599 (812)
+.|.+.|..-.. ..||. ..|+.+-.++.. .|.-.+|...+++..+ .+ .-+...|-..+-.....|.+++|++.
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~--~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIR--LKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHH--HhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 999999999988 88988 679999999988 9999999999998886 55 34455666667777889999999999
Q ss_pred HHhCC
Q 040319 600 INNMP 604 (812)
Q Consensus 600 ~~~m~ 604 (812)
+.++.
T Consensus 610 ~~rll 614 (777)
T KOG1128|consen 610 YHRLL 614 (777)
T ss_pred HHHHH
Confidence 88864
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.06 E-value=0.024 Score=59.57 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=90.6
Q ss_pred hHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHhhhcCCHHHHHHHHcc
Q 040319 420 HAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSS-DLGVANSMVSMYFKCCNMSNAIKAFNK 498 (812)
Q Consensus 420 ~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~ 498 (812)
...+.+.+......+.|+ .+|...++...+...++.|+.+|..+.+.+..+ ++.++++++..|+ .++.+-|.++|+-
T Consensus 349 ~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeL 426 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFEL 426 (656)
T ss_pred hhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHH
Confidence 334444444432233333 345555666666666677777777777666555 6666677776665 3556666666653
Q ss_pred CCC--CChhHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcC-
Q 040319 499 MPS--HDIVSW-NGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYN- 572 (812)
Q Consensus 499 ~~~--~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~- 572 (812)
=.. +|...| +..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+. -|++....++-+++...+.
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~--vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN--VGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhcch
Confidence 222 333322 34455555566666666666666666555554 445666655445 5666666655555544333
Q ss_pred -ccCCcchHHHHHHHHhhcCC
Q 040319 573 -IEPTSEHYASLVSVLGYWGF 592 (812)
Q Consensus 573 -~~p~~~~y~~li~~l~~~g~ 592 (812)
..|...+-..+++-|+=.+.
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred hhcCCCChHHHHHHHHhhccc
Confidence 33333334444444443333
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.0015 Score=68.41 Aligned_cols=242 Identities=12% Similarity=0.028 Sum_probs=147.2
Q ss_pred HHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHH-HHHHHhcCccchHHHHHHHHHHHHhCCCC--c----hhHHHHHH
Q 040319 408 MICGYARSGKPEHAILLFHQSQSEATVVPDEIALT-SVLGVCGTLGFHEMGKQIHSYALKTGFSS--D----LGVANSMV 480 (812)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~~~Li 480 (812)
+.....+..++..|++-+..... +. ...||. ..-.++...|........-...++.|.+. + .....-+.
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~e---l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALE---LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh---Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 44444455556666666655554 33 333333 22334445554444444333333333210 0 11112244
Q ss_pred HHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcCCCCchH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT-FVLIISAYRYTNLNLV 557 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~g~~ 557 (812)
..|.+.++.+.|...|.+... ++.. ...+....+++++..+...- +.|+... ...=...+-+ .|++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk--~gdy 374 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFK--KGDY 374 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHh--ccCH
Confidence 578888999999999987543 2211 12233455666666666555 5666521 1111333445 7999
Q ss_pred HHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 558 DSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
..|...+.++.+.. +-|...|+.-.-+|.+.|.+.+|+.=.+... ..|+ ...|.-=..++....+++.|...+++.
T Consensus 375 ~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988632 3357889999999999999999988766533 5554 334444455566678999999999999
Q ss_pred HccCCCCCchHHHHHhhhhhCCCcchHHHHH
Q 040319 636 LAMEPQDPATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 636 ~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
++++|++..+...+..++......+...++.
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 9999999888888888777654444444443
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.00058 Score=70.73 Aligned_cols=144 Identities=16% Similarity=0.103 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS-AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASL 583 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 583 (812)
.+......+...|++++|+..++.++. -.||...|..+.. -+.. .++.++|.+.++.+.. ..|+ ....-.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~--~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLE--ANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 334444455668899999999999888 7888877776665 3455 8889999999998876 4566 5667778
Q ss_pred HHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcch
Q 040319 584 VSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHN 661 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 661 (812)
.++|.+.|+..+|+..++... .+-|+..|.-|..+|...|+..++..+. +..|+-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHH
Confidence 889999999999999988865 3347889999999999999988777654 456778899999
Q ss_pred HHHHHHHHHhCC
Q 040319 662 SELVREDMREKG 673 (812)
Q Consensus 662 a~~~~~~m~~~g 673 (812)
|.......+++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999988887653
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00014 Score=69.22 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHH
Q 040319 535 IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVW 612 (812)
Q Consensus 535 ~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~ 612 (812)
..|+......+-.++.. .|+-+.+..+....... -..+.......+....+.|++.+|...+++.. -+||...|
T Consensus 62 ~~p~d~~i~~~a~a~~~--~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~ 137 (257)
T COG5010 62 RNPEDLSIAKLATALYL--RGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW 137 (257)
T ss_pred cCcchHHHHHHHHHHHh--cccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhh
Confidence 45544333444445555 67777777776665431 22334455668888999999999999999865 45578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+.+..+|-+.|+++.|+..+.+++++.|.++.++..|+-.|.-.|+.++|..++......
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999998877543
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.03 E-value=0.00023 Score=80.78 Aligned_cols=136 Identities=14% Similarity=0.102 Sum_probs=97.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchH
Q 040319 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHY 580 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y 580 (812)
++..+-.|.....+.|++++|..+++...+ +.||. .....+...+.+ .+.+++|...+++... ..|+ ..+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~--~~~~eeA~~~~~~~l~---~~p~~~~~~ 157 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKR--QQGIEAGRAEIELYFS---GGSSSAREI 157 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHhh---cCCCCHHHH
Confidence 356666677777778888888888888887 77876 445555666666 7788888888777765 3454 5667
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
..+..++.+.|++++|.++|++.. ..|+ ..+|.++..++...|+.+.|..+++++++...+-...
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 777778888888888888888755 3443 6677788888888888888888888888765443333
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.03 E-value=0.00016 Score=81.91 Aligned_cols=131 Identities=11% Similarity=-0.008 Sum_probs=112.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-H
Q 040319 535 IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVS-V 611 (812)
Q Consensus 535 ~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~-~ 611 (812)
...+...+..|...-.+ .|.+++|..+++...+ +.|+ ......++..|.+.+++++|+..+++.. ..|+.. .
T Consensus 82 ~~~~~~~~~~La~i~~~--~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEA--AHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHH--cCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 44556777777777777 9999999999999987 6787 6677889999999999999999999965 778654 5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 612 WRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 612 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
...+..++...|..++|..+|++++...|+++.++..++..+-+.|+.++|...+++.-
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555567789999999999999999999999999999999999999999999888773
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00011 Score=77.07 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLD 617 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~ 617 (812)
.-..+++..+.. .+.++.|.++|+++.+. +++....|+.++...++-.+|.+++++.. ..| |...+.....
T Consensus 170 yLv~~Ll~~l~~--t~~~~~ai~lle~L~~~-----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 170 YLVDTLLKYLSL--TQRYDEAIELLEKLRER-----DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAE 242 (395)
T ss_pred HHHHHHHHHHhh--cccHHHHHHHHHHHHhc-----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334556667777 78899999999999873 34456678888888899999999998865 445 5556665566
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 618 SCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.|...++.+.|..+++++.++.|++...|..|+.+|...|+|++|....+.++
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 68899999999999999999999999999999999999999999999999886
No 129
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.01 E-value=0.0023 Score=62.89 Aligned_cols=249 Identities=16% Similarity=0.122 Sum_probs=175.5
Q ss_pred HHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhcCCC
Q 040319 478 SMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLI---AGHLLHRQGDEALAVWSSMEKASIKPDAITFVL-IISAYRYTN 553 (812)
Q Consensus 478 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~~ 553 (812)
-|...+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=+.+.++ .+||-..-.. -...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK-- 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK-- 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh--
Confidence 4556677789999999999999887777777664 578889999999999999999 8998643211 1112234
Q ss_pred CchHHHHHHHHHHhhhhcCccCC----cc----------hHH--HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT----SE----------HYA--SLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRAL 615 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~----~~----------~y~--~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l 615 (812)
.|.+++|..=|+..... .|+ .+ +|. .++..+...|+...|++++..+. +.| |+..+..-
T Consensus 119 ~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred cccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 89999999999988762 232 22 222 23344566789999999998865 666 77777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeC
Q 040319 616 LDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVR 695 (812)
Q Consensus 616 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~ 695 (812)
..+|...|.+..|+.-++.+-++..+++..++-++.+|...|+.+++...+++..+- +|
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl----dp----------------- 254 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL----DP----------------- 254 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc----Cc-----------------
Confidence 778888999999999999999999999999999999999999999999887776332 22
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCC-CcEEEEcccccc
Q 040319 696 DKSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAG-QPVRIVKNILTC 772 (812)
Q Consensus 696 ~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~-~~~~~~~n~~~c 772 (812)
.|...---|.+|..+.+.+...- +..++ ..-.+-|+-.=.++.+.|. .+||+----++|
T Consensus 255 --dHK~Cf~~YKklkKv~K~les~e--------------~~ie~--~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 255 --DHKLCFPFYKKLKKVVKSLESAE--------------QAIEE--KHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHH--------------HHHhh--hhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 35444445666666555553321 00000 1124555555566766555 778765555555
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=1e-05 Score=52.64 Aligned_cols=35 Identities=46% Similarity=0.817 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTE 334 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 334 (812)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 131
>PLN02789 farnesyltranstransferase
Probab=97.99 E-value=0.00032 Score=72.14 Aligned_cols=184 Identities=9% Similarity=0.025 Sum_probs=132.6
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCC
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHR-QGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTN 553 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~ 553 (812)
+-..+.+.+..++|+.+.+++.+ .+...|+.-...+...| ++++++..++++.+ ..|+. .++..--..+..
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~-- 118 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEK-- 118 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHH--
Confidence 34445566778888888887665 34567777666777777 57999999999998 56665 334433223333
Q ss_pred Cch--HHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CC-
Q 040319 554 LNL--VDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR---LN- 624 (812)
Q Consensus 554 ~g~--~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---~~- 624 (812)
.|. .+++..+++.+.+ +.| +...|+...-++.+.|++++|++.++++. ..| |..+|+......... |.
T Consensus 119 l~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 444 3677888888775 345 46788888889999999999999999975 445 677888877766554 22
Q ss_pred ---HHHHHHHHHHHHccCCCCCchHHHHHhhhhhC----CCcchHHHHHHHH
Q 040319 625 ---TTIGKRVAKHILAMEPQDPATYILVSNLYSSS----GRWHNSELVREDM 669 (812)
Q Consensus 625 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~m 669 (812)
.+......+++++++|+|..+|..+..+|... ++..+|.++....
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 24667778899999999999999999999883 3445676666553
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.99 E-value=4.5e-05 Score=68.37 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=80.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
......++..+...|++++|.+.++... ..| +...|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 4556677777888888888888888754 445 66788888888888999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhC
Q 040319 655 SSGRWHNSELVREDMREK 672 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~~ 672 (812)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887543
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.00029 Score=80.61 Aligned_cols=240 Identities=8% Similarity=0.006 Sum_probs=138.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce-eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHH
Q 040319 368 NDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS-IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLG 446 (812)
Q Consensus 368 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~ 446 (812)
+...+..|+..|...+++++|..+.+......|+. ..|-.+...+.+.++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL------------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh------------------hhhh
Confidence 45666777777777777777777776544233322 2333333345555554444433 2222
Q ss_pred HhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHH
Q 040319 447 VCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEA 523 (812)
Q Consensus 447 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 523 (812)
......++.....+...+... ..+...+..|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 223333333333444444442 23344666677777777777777777776655 4566667777777766 77777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 524 LAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 524 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
++++.+..+. +.. .+++.++.+++..+.. ..|+ .+.+--+.......
T Consensus 169 ~~m~~KAV~~---------------~i~--~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~------------ 216 (906)
T PRK14720 169 ITYLKKAIYR---------------FIK--KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGH------------ 216 (906)
T ss_pred HHHHHHHHHH---------------HHh--hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhh------------
Confidence 7777776652 222 4456666666666654 1222 22211111111111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 603 MPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 603 m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
....--..+|--+-.-|+..++.+.+..+++.+++.+|+|..+..-++..|. +++.+-
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~ 274 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDH 274 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCc
Confidence 1112223345555567788899999999999999999999998888888887 544443
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.8e-05 Score=51.05 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP 537 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 537 (812)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 135
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00035 Score=66.49 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=82.5
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCC
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNL 554 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 554 (812)
+-..|.-.|+-+.+..+...... .|....+..+....+.|++.+|+..|++... ..|+. .+++.+-.+|-+ .
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq--~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ--L 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH--c
Confidence 33444445555555555444322 3333444456666666666666666666665 33333 555555555655 6
Q ss_pred chHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 555 NLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
|+.++|..-|.+..+ +.|+ +..++.|.-.|.-.|+++.|..++.... ..+ |..+-..|.-+-...|+++.|+.+
T Consensus 148 Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 666666666665554 2332 4455666666666666666666665543 222 455555566666666666666665
Q ss_pred HHHH
Q 040319 632 AKHI 635 (812)
Q Consensus 632 ~~~~ 635 (812)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 5543
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=0.00078 Score=69.79 Aligned_cols=175 Identities=14% Similarity=0.111 Sum_probs=126.3
Q ss_pred CHHHHHHHHccCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHH
Q 040319 488 NMSNAIKAFNKMPS------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 488 ~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
++.+++..-+.++. |+.......+.+.........+-.++ -+... -.-...-|..-+..+ . .|..++|+
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~-~~~~aa~YG~A~~~~-~--~~~~d~A~ 326 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLL-AKRSK-RGGLAAQYGRALQTY-L--AGQYDEAL 326 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHH-HHHhC-ccchHHHHHHHHHHH-H--hcccchHH
Confidence 34444444444443 45555555555443322222222222 22221 011223344444433 3 68999999
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
..++.+.+. .+-++..+....+.+.+.++.++|.+.++++. ..|+ ...|-.+..++.+.|+..+|+.+++....-+
T Consensus 327 ~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 327 KLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 999998763 33446777888999999999999999999976 7786 6788889999999999999999999999999
Q ss_pred CCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 640 PQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 640 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
|+|+..|..|+..|...|+-.+|..-+.++
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 999999999999999999999999988876
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=2.9e-05 Score=50.06 Aligned_cols=33 Identities=30% Similarity=0.637 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 040319 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVP 97 (812)
Q Consensus 65 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 97 (812)
.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988887
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0067 Score=57.95 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=87.3
Q ss_pred HHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~ 558 (812)
-...|.+.|++++|.+.......-+....|. ..+.+..+.+-|.+.+++|.+ +. +..|.+-|..++
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~aw--------- 179 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAW--------- 179 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHH---------
Confidence 3445666666666666665533222222222 223344455566666666655 21 223333333332
Q ss_pred HHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040319 559 SCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHIL 636 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 636 (812)
|....-.+.+.+|.-+|++|. ..|+..+.+....+|...|++++|+.+.+.++
T Consensus 180 -------------------------v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 180 -------------------------VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred -------------------------HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 222223334555555666554 45677777777777778888888888888888
Q ss_pred ccCCCCCchHHHHHhhhhhCCCcchHH-HHHHHH
Q 040319 637 AMEPQDPATYILVSNLYSSSGRWHNSE-LVREDM 669 (812)
Q Consensus 637 ~~~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m 669 (812)
.-+|+++.+...++-.--..|+-.++. +.....
T Consensus 235 ~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 235 DKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 888888777777766666667665553 334444
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=4.6e-05 Score=47.85 Aligned_cols=31 Identities=39% Similarity=0.521 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASI 535 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 535 (812)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.67 E-value=0.00059 Score=61.07 Aligned_cols=114 Identities=10% Similarity=0.053 Sum_probs=83.4
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 526 VWSSMEKASIKPDAI-TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 526 l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
+|++.++ ..|+.. ....+...+.. .|++++|.+.|+.+... -+.+...|..+...+.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQ--QGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHH--cccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 566553 34444445556 78888888888887652 12356778888888888888888888888753
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 605 -FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 605 -~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
..| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 445 56777777888889999999999999999999987653
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.66 E-value=0.00027 Score=58.32 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=77.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
.|..+...+.+.|++++|...+++.. ..| +...|..+...+...++.+.|...++++++..|.++..+..++.+|...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35567778888899999999988854 445 4467777777888889999999999999999999888999999999999
Q ss_pred CCcchHHHHHHHHHh
Q 040319 657 GRWHNSELVREDMRE 671 (812)
Q Consensus 657 g~~~~a~~~~~~m~~ 671 (812)
|++++|.+.+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999998887643
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.64 E-value=0.00083 Score=70.47 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=100.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCC
Q 040319 475 VANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTN 553 (812)
Q Consensus 475 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~ 553 (812)
.-.+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.++ ..|+. .....-...|..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~-- 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS-- 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh--
Confidence 3345667777789999999999999886666667788888888999999999999997 56655 333333334666
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMPFQP 607 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p 607 (812)
.++++.|.++.+++.+ ..|+ -.+|..|+.+|...|++++|+..++.+|+-|
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8899999999999886 5676 5699999999999999999999999998443
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.003 Score=59.76 Aligned_cols=160 Identities=12% Similarity=0.085 Sum_probs=109.4
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC--CCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCC
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS--HDI---VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTN 553 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~--~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 553 (812)
++-+..-+|+.+.|...++.+.. |+. .-..+| -+-..|++++|+++++..++.+ +.|.+++..=+...-.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka-- 132 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA-- 132 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH--
Confidence 33444556777777777666544 221 222222 2345788999999999998854 3334666544444434
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC---CHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRL---NTTIG 628 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~---~~~~a 628 (812)
.|.--+|++-+....+ .+..|.+.|.-+.++|...|++++|.--++++. +.| ++..+..+.......| |++.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6666688877777665 356788999999999999999999998888865 667 5566666666654443 77888
Q ss_pred HHHHHHHHccCCCCCch
Q 040319 629 KRVAKHILAMEPQDPAT 645 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~ 645 (812)
.+.+++++++.|.+...
T Consensus 211 rkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHhChHhHHH
Confidence 99999999999865443
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=8.7e-05 Score=46.59 Aligned_cols=31 Identities=48% Similarity=0.929 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGL 330 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 330 (812)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.58 E-value=0.22 Score=56.01 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=99.0
Q ss_pred cCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHH--hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 040319 178 NEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTAC--TGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKD 255 (812)
Q Consensus 178 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 255 (812)
..+++..|+.....+.++. |+. .|..++.++ .+.|..++|..+++.....+.. |..+...+-.+|-..|+.++
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3455666666665553332 222 233444443 3556666666555554443322 56666666666666666666
Q ss_pred HHHHHhcCCC--CcchhHHHHHHHHHhhCChh----HHHHHhccCCCCCcccHHHHHHHHHhC-CCh---------HHHH
Q 040319 256 VVALLERMPV--MDIITLTEIIIAYMEFGYVD----LAVEIFDKMPEKNSVSYNALLAGYCKN-GKA---------MEAL 319 (812)
Q Consensus 256 A~~l~~~~~~--~~~~~~~~li~~~~~~g~~~----~A~~~f~~m~~~d~~~~~~li~~~~~~-g~~---------~~A~ 319 (812)
|..++++... |+......+..+|.+.+.+. .|++++...+++--.-|+. ++.+.+. ... .-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHH
Confidence 6666666643 33333444445555554442 3555666555443334443 2322221 111 1234
Q ss_pred HHHHHHHHcC-CCCCHhHHHHHHHHhccchhhhhHHHHHh-hHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 040319 320 GLFVKLLEEG-LVLTEFTLTSVVNACGLIMEAKLSEQIHG-FVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWP 396 (812)
Q Consensus 320 ~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~-~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 396 (812)
+.++.+.+.+ -.-+..-.-.-+......+..++|..++. .....-..-+...-+--++.+.+++++.+..++-.++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4444444433 11111111111122233445555555552 22222223344444555666666666666555544443
No 146
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00032 Score=70.61 Aligned_cols=88 Identities=9% Similarity=-0.045 Sum_probs=73.7
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCC
Q 040319 584 VSVLGYWGFLEEAEETINNMP-FQP-----KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG 657 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~-~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 657 (812)
.+-..+.|++.+|.+.+.+.. +.| ++..|.....+..+.|+.++|..-.+.+++++|.-..+|..-+++|-..+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 345678899999999998854 444 45566666666778999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHh
Q 040319 658 RWHNSELVREDMRE 671 (812)
Q Consensus 658 ~~~~a~~~~~~m~~ 671 (812)
+|++|.+-+++.-+
T Consensus 336 ~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888754
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.0021 Score=70.77 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+.++.++.-.....|+.++|...++++++++| +..+|..++.+|...|+.++|.+.+++..
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444445666666666666666666 34556666666666666666666555543
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.49 E-value=0.00081 Score=70.90 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=58.6
Q ss_pred HHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHH
Q 040319 586 VLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSE 663 (812)
Q Consensus 586 ~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 663 (812)
.+...|++++|++.+++.. ..| +...|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3445667777777666643 444 45566666666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHh
Q 040319 664 LVREDMRE 671 (812)
Q Consensus 664 ~~~~~m~~ 671 (812)
..+++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 77766543
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.49 E-value=0.00017 Score=55.62 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCC-CcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG-RWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 671 (812)
++.+|..+...+...|+++.|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888888999999999999999999999999999999999999999 79999998887643
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.47 E-value=0.0009 Score=58.22 Aligned_cols=94 Identities=10% Similarity=0.059 Sum_probs=62.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHH
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILVS 650 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 650 (812)
.+-..+..+.+.|++++|.+.++++. ..|+ ...+..+..++...|+++.|...++.+++..|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555666666777777777766653 2232 2345556666777777777777777777777664 44577777
Q ss_pred hhhhhCCCcchHHHHHHHHHhC
Q 040319 651 NLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 651 ~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
.+|.+.|++++|.+.++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777776554
No 151
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.47 E-value=0.015 Score=67.14 Aligned_cols=241 Identities=11% Similarity=0.035 Sum_probs=151.4
Q ss_pred cCCCCCH-hHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeH
Q 040319 328 EGLVLTE-FTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWT 406 (812)
Q Consensus 328 ~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~ 406 (812)
....|+. ..+..|+..+...++++.+.++.+...+.... ....+-.+...|.+.++.+++..+ .+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------- 90 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLI---------- 90 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhh----------
Confidence 3455554 46778888888999999999999966664332 222333333377777777766655 222
Q ss_pred HHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhc
Q 040319 407 SMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC 486 (812)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 486 (812)
..+....++.-...+...|.. ..-+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+..
T Consensus 91 ---~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 91 ---DSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred ---hhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 222222233222223333333 22334467778888999999999999999999977 56889999999999999
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhcCCCCchHHHHHHHHH
Q 040319 487 CNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITF-VLIISAYRYTNLNLVDSCRKLFL 565 (812)
Q Consensus 487 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~g~~~~a~~~~~ 565 (812)
++++|.+++.+. +..|...+++.++.++|.++.. ..|+.+.+ .-++.....
T Consensus 164 -dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~-------------- 215 (906)
T PRK14720 164 -DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLG-------------- 215 (906)
T ss_pred -hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHh--------------
Confidence 999999998764 4447778899999999999998 66776443 222222111
Q ss_pred HhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 040319 566 SMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCR 620 (812)
Q Consensus 566 ~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 620 (812)
.-+...-+.++--+.+.|-..++++++..+++... ..| |.....-++..|+
T Consensus 216 ----~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 ----HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ----hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11111222333444455555666777777776644 334 3444444444443
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.00088 Score=65.15 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=56.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCC
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGF 592 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~ 592 (812)
+.+.+++++|+..|.+.++ +.|+. +-|..=..||++ .|.++.|++-.+....
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~--Lg~~~~AVkDce~Al~----------------------- 143 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSK--LGEYEDAVKDCESALS----------------------- 143 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHH--hcchHHHHHHHHHHHh-----------------------
Confidence 3455666666666666666 55544 334444445555 5555555555444443
Q ss_pred hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 593 LEEAEETINNMPFQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 593 ~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+.|. ..+|..|.-++...|++++|+++|+++++++|++......|
T Consensus 144 ------------iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 144 ------------IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred ------------cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 3443 34666666666667777777777777777777666444444
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.43 E-value=6.4e-05 Score=60.71 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=45.9
Q ss_pred CChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHH
Q 040319 591 GFLEEAEETINNMP-FQP---KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 591 g~~~~A~~~~~~m~-~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
|++++|+.+++++. ..| +...|..+..++...|+.+.|..++++ .+.+|.++.....++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34444444444432 122 334455556666666666666666666 5666666666667788888888888888777
Q ss_pred HH
Q 040319 667 ED 668 (812)
Q Consensus 667 ~~ 668 (812)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.40 E-value=0.0022 Score=58.00 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=43.2
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 584 VSVLGYWGFLEEAEETINNMP-FQPKV----SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
...+...|++++|.+.++... ..||. .....|...+...|+++.|...++.. .-.|-.+..+..++++|.+.|+
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC
Confidence 344445555555555555433 11221 22333344445555666555555442 2223334556667777777777
Q ss_pred cchHHHHHHH
Q 040319 659 WHNSELVRED 668 (812)
Q Consensus 659 ~~~a~~~~~~ 668 (812)
+++|...+++
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.36 E-value=0.0059 Score=55.24 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=66.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHH--HHHHhcCCCCchHHHHHHHHHHhhhhcCccCC--cchHHH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVL--IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--SEHYAS 582 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~--ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~ 582 (812)
.++..+ ..++...+...++++.+. .|+. ..... +-..+.. .|++++|...|+..... .-.|. ....-.
T Consensus 17 ~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~--~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 17 QALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYE--QGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 334433 356666666666666663 3333 11222 2233444 66777777777666652 21121 123334
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 583 LVSVLGYWGFLEEAEETINNMPFQP-KVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
+..++...|++++|+..++..+..+ .+..+..+...+...|+.+.|+..++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5666677777777777776654222 3445555556677777777777777665
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.35 E-value=0.00033 Score=53.23 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...+...|+++.|+..++++++.+|+++.++..++.+|...|++++|..++++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567788888888888888888888888888888888888888888888887754
No 157
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.35 E-value=0.0001 Score=47.08 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=30.9
Q ss_pred HHHHHccCCCCCchHHHHHhhhhhCCCcchHHH
Q 040319 632 AKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 632 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.00043 Score=67.28 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=76.8
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
+-+.+.+++++|++.+.+.. +.| |++.|..-..+|.+.|.++.|.+.++.+++++|....+|..|+-+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567789999999998854 677 6777777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 040319 663 ELVREDMRE 671 (812)
Q Consensus 663 ~~~~~~m~~ 671 (812)
.+.+++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887644
No 159
>PRK15331 chaperone protein SicA; Provisional
Probab=97.34 E-value=0.0025 Score=56.93 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=76.5
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcc
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWH 660 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 660 (812)
...-+-..|++++|..+|+-+- ..| +..-|..|...|...++.+.|...+..+..++++||.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444557899999999888754 344 66678888888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 040319 661 NSELVREDMRE 671 (812)
Q Consensus 661 ~a~~~~~~m~~ 671 (812)
+|...+....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988643
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.34 E-value=0.17 Score=52.03 Aligned_cols=104 Identities=14% Similarity=0.031 Sum_probs=70.1
Q ss_pred HHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDS 559 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~ 559 (812)
+.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... .- ..+-|..++.+|.. .|...+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~--~~~~~e 255 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLK--YGNKKE 255 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHH--CCCHHH
Confidence 44455667777888877777778888888888888888887766654332 12 23667777777777 777777
Q ss_pred HHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 560 CRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 560 a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
|..+...+. +..-+.+|.++|.+.+|.+.--+
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 777765432 24556777777877777665444
No 161
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.34 E-value=0.21 Score=51.43 Aligned_cols=84 Identities=21% Similarity=0.122 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHH
Q 040319 239 VNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEA 318 (812)
Q Consensus 239 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 318 (812)
+.+.-|.-+...|+...|.++-.+..-||..-|-..+.+|++.+++++-.++... ++.++.|..++..+.+.|+..+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHH
Confidence 3444455566677777777777777777777777777777777777776665543 45667777777777777777777
Q ss_pred HHHHHH
Q 040319 319 LGLFVK 324 (812)
Q Consensus 319 ~~l~~~ 324 (812)
..+...
T Consensus 257 ~~yI~k 262 (319)
T PF04840_consen 257 SKYIPK 262 (319)
T ss_pred HHHHHh
Confidence 766655
No 162
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.019 Score=55.04 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=79.2
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCC-cccH
Q 040319 224 VHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKN-SVSY 302 (812)
Q Consensus 224 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d-~~~~ 302 (812)
+.+.+.......+......-...|++.|++++|.+.+... .+......=+..+.+..+++-|.+.+++|.+-| ..+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tL 172 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATL 172 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 3344443333444344444445677777777777776662 233333333455666777777777777777643 3344
Q ss_pred HHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhc
Q 040319 303 NALLAGYCK----NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFG 364 (812)
Q Consensus 303 ~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 364 (812)
+-|.+++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...+++++|..++..++...
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 445444433 34567777777777543 45666666666666666666666666666655543
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0011 Score=61.74 Aligned_cols=93 Identities=11% Similarity=-0.080 Sum_probs=75.9
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
....|..++..+...|++++|+..+++.. ..|+ ..+|..+...+...|+.++|...++++++++|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35566777788888899999999988853 3332 357888888999999999999999999999999999999999
Q ss_pred hhhh-------hCCCcchHHHHHHH
Q 040319 651 NLYS-------SSGRWHNSELVRED 668 (812)
Q Consensus 651 ~~y~-------~~g~~~~a~~~~~~ 668 (812)
.+|. +.|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9999 78888766655554
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.013 Score=55.69 Aligned_cols=155 Identities=12% Similarity=0.118 Sum_probs=122.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHH
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI----TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYAS 582 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 582 (812)
|..++-+....|+.+.|...++++... .|.+. -...++.+ .|.+++|.++++++.++. +.+..+|--
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa-----~~~~~~A~e~y~~lL~dd--pt~~v~~KR 125 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEA-----TGNYKEAIEYYESLLEDD--PTDTVIRKR 125 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHH-----hhchhhHHHHHHHHhccC--cchhHHHHH
Confidence 444556667789999999999999884 37652 23444555 788999999999998743 334677777
Q ss_pred HHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC--
Q 040319 583 LVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR-- 658 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~-- 658 (812)
=+-++-..|+--+|++-+.+.. +..|.-.|.-|...|...|+++.|.-.+|+++=+.|.++..+..+++++.-.|-
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 7778888888888887776644 567899999999999999999999999999999999999999999999888875
Q ss_pred -cchHHHHHHHHH
Q 040319 659 -WHNSELVREDMR 670 (812)
Q Consensus 659 -~~~a~~~~~~m~ 670 (812)
.+-|.+.+.+..
T Consensus 206 N~~~arkyy~~al 218 (289)
T KOG3060|consen 206 NLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 445555555543
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.0019 Score=60.46 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=65.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 651 (812)
...|..+...+.+.|++++|...+++.. ..|+ ...|..+...+...|+.+.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4456667777777888888888777653 2222 3577788888899999999999999999999999999999999
Q ss_pred hhhhCCC
Q 040319 652 LYSSSGR 658 (812)
Q Consensus 652 ~y~~~g~ 658 (812)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988887
No 166
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.22 E-value=0.13 Score=52.17 Aligned_cols=214 Identities=14% Similarity=0.108 Sum_probs=142.5
Q ss_pred HHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCC-----CCChh--HHHHHHHHHH
Q 040319 443 SVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP-----SHDIV--SWNGLIAGHL 515 (812)
Q Consensus 443 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~--~~~~li~~~~ 515 (812)
.+.-...+.|..+.++++-+..-..- +.-...+.++++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33334455677777776666554422 2234566778888999999999999987543 35542 2223333322
Q ss_pred ---hcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcC
Q 040319 516 ---LHRQGDEALAVWSSMEKASIKPDAITFVL-IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWG 591 (812)
Q Consensus 516 ---~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g 591 (812)
-.-+...|...-.+..+ +.||-+.-.. --.++.. .|++.++-.+++.+-+ ..|.+..+...++ .|.|
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~--d~~~rKg~~ilE~aWK---~ePHP~ia~lY~~--ar~g 308 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFR--DGNLRKGSKILETAWK---AEPHPDIALLYVR--ARSG 308 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHh--ccchhhhhhHHHHHHh---cCCChHHHHHHHH--hcCC
Confidence 23456677777777766 8888754333 3346666 8999999999998865 5677777665543 4555
Q ss_pred ChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC-CCcchHHHH
Q 040319 592 FLEEAEETINNM----PFQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS-GRWHNSELV 665 (812)
Q Consensus 592 ~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~ 665 (812)
+- +++-+++. .++|| ......+..+....|++..|....+.+..++|. .+.|.+|+++-... |+-.++...
T Consensus 309 dt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 309 DT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred Cc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHH
Confidence 42 22222221 14665 445555666777889999999999999999997 77899999998776 888888877
Q ss_pred HHHH
Q 040319 666 REDM 669 (812)
Q Consensus 666 ~~~m 669 (812)
+-+.
T Consensus 386 lAqa 389 (531)
T COG3898 386 LAQA 389 (531)
T ss_pred HHHH
Confidence 7654
No 167
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.22 E-value=0.41 Score=50.84 Aligned_cols=160 Identities=9% Similarity=0.026 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL 583 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 583 (812)
.+|-..+..-.+..-.+.|..+|.+..+.+..+ +.....+++.-++. ++..-|.++|+.=.+.+|- ++.--.+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs---kD~~~AfrIFeLGLkkf~d--~p~yv~~Y 441 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS---KDKETAFRIFELGLKKFGD--SPEYVLKY 441 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc---CChhHHHHHHHHHHHhcCC--ChHHHHHH
Confidence 467777777777777889999999999998888 55667777776654 8899999999976664533 33445678
Q ss_pred HHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC----CchHHHHHhhhh
Q 040319 584 VSVLGYWGFLEEAEETINNMP---FQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD----PATYILVSNLYS 654 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~ 654 (812)
++-|.+-++-..|..+|++.. +.|| ..+|..+|.--..-||+.....+-++....-|.+ ...-..+.+.|.
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~ 521 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYG 521 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHh
Confidence 888999999999999999865 3444 4699999999999999999999888877665521 123455677787
Q ss_pred hCCCcchHHHHHHHH
Q 040319 655 SSGRWHNSELVREDM 669 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m 669 (812)
=.++...-..-++.|
T Consensus 522 ~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 522 ILDLYPCSLDELKFL 536 (656)
T ss_pred hcccccccHHHHHhh
Confidence 777776555555544
No 168
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.19 E-value=0.0035 Score=54.39 Aligned_cols=67 Identities=15% Similarity=-0.012 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
+..+..++.+.|++++|.+.++++. ..|+ ..++..+..++...|+.+.|...++++++..|+++...
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 3334555555555555555555432 2222 34566666667777888888888888888888765543
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.17 E-value=0.048 Score=58.43 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=60.3
Q ss_pred HHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~ 558 (812)
-..++...|+.++|..+. ..+|-.+-++++-+++-.. +..+...+..-+.. ...+.
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~--l~~~g 764 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDKA----EREPLLLCATYLKK--LDSPG 764 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhh--ccccc
Confidence 455666777777776653 3344445555554444331 22333333333333 55566
Q ss_pred HHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH
Q 040319 559 SCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPKV 609 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~ 609 (812)
-|-++|.+|-. ...++++....|+++||..+-++.| +.||.
T Consensus 765 LAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 765 LAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 77888887754 3567888889999999999999988 56664
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.12 E-value=0.013 Score=54.60 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchH
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD--AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHY 580 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y 580 (812)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+.+ .|+.++|...++...+ +.|+ ...+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~--~g~~~eA~~~~~~Al~---~~~~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS--NGEHTKALEYYFQALE---RNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCcCcHHHH
Confidence 35566677777777888888888888776322221 1355556566666 7777777777776664 2232 3444
Q ss_pred HHHHHHHh-------hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 581 ASLVSVLG-------YWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 581 ~~li~~l~-------~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
..+..++. +.|++++|+.. .+.|...++++++.+|++. ......+
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~~---~~~~~~~ 161 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGNY---IEAQNWL 161 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCcccH---HHHHHHH
Confidence 44444444 33344333322 3456677788888888632 3333444
Q ss_pred hhCCCc
Q 040319 654 SSSGRW 659 (812)
Q Consensus 654 ~~~g~~ 659 (812)
...|++
T Consensus 162 ~~~~~~ 167 (168)
T CHL00033 162 KITGRF 167 (168)
T ss_pred HHhcCC
Confidence 444544
No 171
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.6 Score=50.96 Aligned_cols=323 Identities=13% Similarity=0.093 Sum_probs=148.5
Q ss_pred CChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCC-----CcccHHHHHHHHHhCCChHHHHHHHHHH
Q 040319 251 GRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEK-----NSVSYNALLAGYCKNGKAMEALGLFVKL 325 (812)
Q Consensus 251 g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m 325 (812)
|++++|++++-+|..+|. -|..+.+.|++-...++++.-... -...|+.+...+.....+++|.+.|..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888887777766654 234455555655555555432211 1235666666666666666666665443
Q ss_pred HHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeee
Q 040319 326 LEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIW 405 (812)
Q Consensus 326 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 405 (812)
... ...+.++.+...++.-+.+- ..++.+....-.+.+|+.+.|.-++|.+.|-+-. .+.
T Consensus 823 ~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk----- 882 (1189)
T KOG2041|consen 823 GDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK----- 882 (1189)
T ss_pred cch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-----
Confidence 211 11122222222222211111 2234445555556666666666666666664443 211
Q ss_pred HHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh
Q 040319 406 TSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFK 485 (812)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 485 (812)
+-+..|...+++.+|.++-+..+- |...|+ +.- .+-++ +.+.+ + ---|.++.|
T Consensus 883 -aAv~tCv~LnQW~~avelaq~~~l-----~qv~tl---iak--------~aaql---l~~~~------~-~eaIe~~Rk 935 (1189)
T KOG2041|consen 883 -AAVHTCVELNQWGEAVELAQRFQL-----PQVQTL---IAK--------QAAQL---LADAN------H-MEAIEKDRK 935 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccc-----hhHHHH---HHH--------HHHHH---Hhhcc------h-HHHHHHhhh
Confidence 234455556666666665544332 222221 110 01111 11111 1 113667888
Q ss_pred cCCHHHHHHHHccCCCCCh---hHHHHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHH
Q 040319 486 CCNMSNAIKAFNKMPSHDI---VSWNGLIAGH----LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~ 558 (812)
.|..-+|.+++.+|.++.. +.+--+=..| ....+..++++-.++....|...|... |+ . .|...
T Consensus 936 a~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~---ll----e--s~~l~ 1006 (1189)
T KOG2041|consen 936 AGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD---LL----E--SGLLA 1006 (1189)
T ss_pred cccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh---hh----h--hhhhh
Confidence 8888888888877765211 1111111111 112233445555555555554433322 11 1 33333
Q ss_pred HHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040319 559 SCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP----FQPKVSVWRALLDSCRIRLNTTIGKRVAKH 634 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 634 (812)
++-.+.+..-. -....|+-.|..--...|+++.|++.--.+. +-|-.-+|.-|.-+.+..+.+.-.-+++-+
T Consensus 1007 ~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmk 1082 (1189)
T KOG2041|consen 1007 EQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMK 1082 (1189)
T ss_pred hHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 33333332211 1234455555666677888888887543332 223344444433333333444444455544
Q ss_pred HHcc
Q 040319 635 ILAM 638 (812)
Q Consensus 635 ~~~~ 638 (812)
+-++
T Consensus 1083 Le~~ 1086 (1189)
T KOG2041|consen 1083 LEAF 1086 (1189)
T ss_pred HHhh
Confidence 4443
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.0067 Score=56.81 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cch
Q 040319 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD--AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEH 579 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 579 (812)
....+..+...|...|++++|+..|++..+....|+ ...+..+...+.. .|++++|...+++..+ +.|+ ...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS--NGEHDKALEYYHQALE---LNPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCcccHHH
Confidence 345677777778888888888888888877432222 2455566666666 7888888888877765 2343 455
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
+..+..++...|+...|..-++.. ...++.|...++++++++|++ |..+...+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 566666666666655544322221 122577888999999999875 6566666666654
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.0028 Score=66.88 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=58.8
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|++.|+++.+ ..|+ ...|..+..+|.+.|++++|+..+++.. +.| +...|..+..+|...|+++.|+.
T Consensus 15 ~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 15 DDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444444444444443 1222 3444455555555566666665555543 344 45566666667777777777777
Q ss_pred HHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 631 VAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
.++++++++|+++.....+..+..+.
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77777777777777766665554433
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.09 E-value=0.011 Score=60.22 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKAS-IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL 583 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 583 (812)
..|-.++....+.+..+.|.++|.+.++.+ ...+.....+++.-+ . .++.+.|.++|+...+. +..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~--~~d~~~A~~Ife~glk~--f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-C--NKDPKRARKIFERGLKK--FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-T--CS-HHHHHHHHHHHHHH--HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-h--CCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 467788888888888899999999988643 233334444444433 2 46777799999998874 44567889999
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 584 VSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
++.+.+.|+.+.|..+|++.. .-|. ..+|..++.--..+|+++....+.+++.+.-|++. ....+++-|.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry~ 151 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRYS 151 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT-
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHhh
Confidence 999999999999999999854 2333 35999999999999999999999999999988744 3444555453
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.06 E-value=0.0013 Score=51.38 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 617 DSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 617 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
..+...++++.|..+++++++++|+++..+..++.+|.+.|++++|.+.++..-+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999988887543
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.06 E-value=0.001 Score=50.46 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=49.6
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
+...+.+.|++++|.+.+++.. ..| +...|..+...+...|+.+.|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566778889999999888854 556 566888888899999999999999999999999864
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.045 Score=49.41 Aligned_cols=130 Identities=10% Similarity=0.080 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-----CCC
Q 040319 535 IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNM-PF-----QPK 608 (812)
Q Consensus 535 ~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~-----~p~ 608 (812)
+.|....-..|..+... .|+..||...|++... .-+.-|....-.+..+....++..+|...+++. .. .||
T Consensus 85 ~ApTvqnr~rLa~al~e--lGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 85 IAPTVQNRYRLANALAE--LGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred hchhHHHHHHHHHHHHH--hhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 55666555666666666 7777777777777664 223344555666666667777777777777763 22 344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
. ...+...+...|..+.|+..++.++..-|+ +..-...+.+++++|+.++|..-...+.
T Consensus 162 ~--~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 162 G--HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred c--hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3 334556688889999999999999999886 6777788899999999998877655543
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0026 Score=62.41 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=86.1
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 575 PTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR---LNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 575 p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
-|.+.|--|...|.+.|+++.|..-|.+.. +.| ++..+..+..++... .+..++..++++++.++|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 358899999999999999999999998865 444 677787777774433 356889999999999999999999999
Q ss_pred HhhhhhCCCcchHHHHHHHHHhCCCC
Q 040319 650 SNLYSSSGRWHNSELVREDMREKGFR 675 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~~g~~ 675 (812)
+-.+...|++.+|...++.|.+....
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876553
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.94 E-value=0.045 Score=54.13 Aligned_cols=173 Identities=12% Similarity=0.024 Sum_probs=108.3
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC--CChh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhc
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS--HDIV----SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYR 550 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~--~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~ 550 (812)
....+.+.|++++|...|+.+.. |+.. ..-.++.+|.+.+++++|...|++.++ ..|+. +.+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 34455678999999999988865 4331 123456777889999999999999998 66665 44444444433
Q ss_pred CCC------------------CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 040319 551 YTN------------------LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW 612 (812)
Q Consensus 551 ~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~ 612 (812)
+.. .....+|...|+.+.+ -|-......+|...+..+...--..-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~e- 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKYE- 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHHH-
Confidence 200 1112334444444443 33333444555444333220000000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.....-|.+.|...-|..-++.+++--|+. +.+...+.+.|.+.|..++|.++.....
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 123344778899999999999999887764 4566788899999999999999887653
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.00071 Score=51.94 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=40.5
Q ss_pred hcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 621 IRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 621 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..|+++.|...++++++.+|+++.++..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888888888888888876543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.001 Score=51.05 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=25.8
Q ss_pred CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 591 GFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 591 g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
|++++|+++++++. ..| +..++..+..+|...|++++|+..++++...+|+++..+..+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 44444444444432 222 344444444445555555555555555555555444433333
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.89 E-value=0.058 Score=55.09 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=70.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCC-chHHHHHHHHHHhhhhcCccCC----cchHHHHH
Q 040319 510 LIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNL-NLVDSCRKLFLSMKTIYNIEPT----SEHYASLV 584 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li 584 (812)
.+..|...|++..|-+.+.++-+ .|.. . |++++|.++|++..+-+..... ...+..++
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~--~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAE---------------IYEE--QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH---------------HHCC--TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---------------HHHH--HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 45666777777776666665544 3444 5 7777777777776553322222 34566778
Q ss_pred HHHhhcCChHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 585 SVLGYWGFLEEAEETINNMP---F-----QPKVS-VWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
.++.+.|++++|.+++++.. . +.+.. .+...+-.+...||...|...+++..+.+|.
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88999999999999998743 1 11111 1222222345678999999999999999986
No 183
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.84 E-value=0.79 Score=47.76 Aligned_cols=230 Identities=12% Similarity=0.050 Sum_probs=123.8
Q ss_pred CCCCCChhh-HHHHHHHhcCccchHHHHHHHHHHHHhCCCC----chhHHHHHHHHhhhcCCHHHHHHHHccCC--CCCh
Q 040319 432 ATVVPDEIA-LTSVLGVCGTLGFHEMGKQIHSYALKTGFSS----DLGVANSMVSMYFKCCNMSNAIKAFNKMP--SHDI 504 (812)
Q Consensus 432 ~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~ 504 (812)
.-+.|+... ...+...+.. +.+.+..+-+.+....+.+ -+..+..++....+.++...|.+.+.-+. +|+.
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~ 331 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRI 331 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 334555432 2333444433 4555555555444332211 23344555666667788888877766443 2333
Q ss_pred h-------HHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hcCCCCchHHHHHHHHHHhhhhc
Q 040319 505 V-------SWNGLIAGHL----LHRQGDEALAVWSSMEKASIKPDAITFVLIISA--YRYTNLNLVDSCRKLFLSMKTIY 571 (812)
Q Consensus 505 ~-------~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a--~~~~~~g~~~~a~~~~~~m~~~~ 571 (812)
. +-.++-+..+ .+-+..+=+.+|++....++.--......+-.| +-+ ..|.-++|.++++.+.+
T Consensus 332 svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~-~g~~dekalnLLk~il~-- 408 (549)
T PF07079_consen 332 SVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE-IGQCDEKALNLLKLILQ-- 408 (549)
T ss_pred hhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHH--
Confidence 2 1111222222 122333445566666553332222221111111 112 03336677787777765
Q ss_pred CccCC-cchHHHHHHHHhhc-------C----ChHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 040319 572 NIEPT-SEHYASLVSVLGYW-------G----FLEEAEETINNMPFQP----KVSVWRALLDS--CRIRLNTTIGKRVAK 633 (812)
Q Consensus 572 ~~~p~-~~~y~~li~~l~~~-------g----~~~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~~~~~~a~~~~~ 633 (812)
+.|. .+.-| .|-.+.+. + ++=.-..++++..+.| +.-+-+.|..| ...+|++.++.-...
T Consensus 409 -ft~yD~ec~n-~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 -FTNYDIECEN-IVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred -hccccHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2332 22222 11111110 1 1222234455544443 45577777777 567999999999988
Q ss_pred HHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 634 HILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 634 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
=+.++.| .+.+|..++-++....+++||.+++.++
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 8899999 6999999999999999999999999875
No 184
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.80 E-value=0.0081 Score=49.09 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
.|..+...+...|++++|+..|++..+ ..|+. ..+..+...+.. .|++++|.+.|+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYK--LGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 355566667777777777777777776 44543 344444444444 5566666666555443
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.73 E-value=0.023 Score=62.68 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=105.2
Q ss_pred CCCChhHHHHHHHHHHhc--CC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCC--CC----chHHHHHHHHHHh
Q 040319 500 PSHDIVSWNGLIAGHLLH--RQ---GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYT--NL----NLVDSCRKLFLSM 567 (812)
Q Consensus 500 ~~~~~~~~~~li~~~~~~--g~---~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~--~~----g~~~~a~~~~~~m 567 (812)
...|...|...+.|.... ++ ...|..+|++.++ ..||. ..+..+..++... -. ..+..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 347888999988876543 22 6799999999999 89997 4444443333320 00 1233444444443
Q ss_pred hhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 568 KTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 568 ~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
........+...|..+.-.....|++++|...+++.. ..|+...|..+...+...|+.++|...+++++.++|.++..|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 3211123345778888777778899999999999976 788988899999999999999999999999999999988644
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.68 E-value=0.016 Score=47.86 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=68.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHhcCCC-CCCcchHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCchh
Q 040319 168 SWNTVISSVVNEFEYEKAFELFRDMKRDNGF-TVDYFTISTLLTACTGCF--------VLMEGRAVHAHAIRIGLGANLS 238 (812)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~-~pd~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~ 238 (812)
+-...|..+...+++.....+|+.+ ++.|+ .|+..+|+.++.+.+++. .+-....+++.++..++.|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3345667777779999999999999 88999 999999999999987553 3445778899999999999999
Q ss_pred HHHHHHHHHHh
Q 040319 239 VNNALIGFYTK 249 (812)
Q Consensus 239 ~~~~li~~~~~ 249 (812)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.68 E-value=0.0031 Score=48.51 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=54.7
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHccCC
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRL-NTTIGKRVAKHILAMEP 640 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 640 (812)
+...|..+...+.+.|++++|+..|++.. ..| +..+|..+..++...| +.++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34567888888889999999999888854 566 5678888888899999 79999999999999988
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.67 E-value=0.016 Score=61.20 Aligned_cols=118 Identities=10% Similarity=-0.039 Sum_probs=75.7
Q ss_pred CCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh--CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC----CChhHH
Q 040319 434 VVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKT--GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS----HDIVSW 507 (812)
Q Consensus 434 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~~~~ 507 (812)
.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.|..+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666666666666555543 2222233445677777777777777777655443 777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 040319 508 NGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY 551 (812)
Q Consensus 508 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 551 (812)
|.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 77777777777777777777777776666666776666666554
No 189
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.66 E-value=0.0047 Score=49.73 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=33.7
Q ss_pred cCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCC
Q 040319 517 HRQGDEALAVWSSMEKASIKP---DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGF 592 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~ 592 (812)
.|+++.|+.+|+++.+ ..| +...+..+..++.+ .|++++|..+++. .+ ..|+ ....-.+..++.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~--~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQ--QGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHH--TTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHH--CCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCC
Confidence 4555556666666555 233 22223334444445 5555555555554 11 1121 1222233455555555
Q ss_pred hHHHHHHHH
Q 040319 593 LEEAEETIN 601 (812)
Q Consensus 593 ~~~A~~~~~ 601 (812)
+++|++.++
T Consensus 74 y~eAi~~l~ 82 (84)
T PF12895_consen 74 YEEAIKALE 82 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.66 E-value=0.019 Score=58.34 Aligned_cols=142 Identities=16% Similarity=0.167 Sum_probs=88.4
Q ss_pred eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 040319 405 WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF 484 (812)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 484 (812)
|..++...-+.+..+.|..+|.+.++......+.....+.+. +...++.+.|..+++...+. +..+...+...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 444444444444455555555555431112222222222222 12234555567777766654 5667788888999999
Q ss_pred hcCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 040319 485 KCCNMSNAIKAFNKMPS--HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYR 550 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 550 (812)
+.|+.+.|+.+|++... +. ...|...+.--.+.|+.+.+.++.+++.+ ..|+..++..++.-|.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRYS 151 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHhh
Confidence 99999999999998765 33 35899999999999999999999999998 6777666666665443
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.62 E-value=0.029 Score=46.36 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCC--------hHHHHHHHHHHHHhCCCCchHHHH
Q 040319 68 TSLISGLAKLGREEEAIELFFRMRSEGI-VPNEHSFVAILTACIRLLE--------LELGFQIHALIVKMGCVDSVFVTN 138 (812)
Q Consensus 68 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 138 (812)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|++.++..- +-....++..|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456677777999999999999999999 8999999999998876532 234566777888888888888888
Q ss_pred HHHHHhhh
Q 040319 139 ALMGLYGK 146 (812)
Q Consensus 139 ~li~~y~~ 146 (812)
.++....+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87776544
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.58 E-value=0.031 Score=50.39 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=90.1
Q ss_pred hcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCc
Q 040319 570 IYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP---FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ--DPA 644 (812)
Q Consensus 570 ~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~ 644 (812)
+..+.|+..+--.|...+.+.|+..||...|++.. +.-|......+.++....++...|...++++.+-.|. .+.
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 34467898888999999999999999999999865 5668899999999999999999999999999999886 677
Q ss_pred hHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 645 TYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 645 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
....++..|...|+.++|+.-++..-.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 888999999999999999998887643
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.55 E-value=0.031 Score=49.85 Aligned_cols=89 Identities=3% Similarity=-0.096 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS-AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASL 583 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 583 (812)
...++..-+.+.|++++|..+|+-... +.|....|..=|. +|-. .|++++|+..|..... +.|+ +..+-.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~--~g~~~~AI~aY~~A~~---L~~ddp~~~~~a 109 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQA--QKHWGEAIYAYGRAAQ---IKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHh---cCCCCchHHHHH
Confidence 333444444555555555555555555 5555533333332 2223 4555555555554433 2222 3334444
Q ss_pred HHHHhhcCChHHHHHHHH
Q 040319 584 VSVLGYWGFLEEAEETIN 601 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~ 601 (812)
..++...|+.+.|.+-|+
T Consensus 110 g~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 110 AECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444444444444444433
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.49 E-value=1.2 Score=45.43 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=44.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHhcCCCCchHHHHHHHHHHhhhh-cCccCC--cch
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKP-----DAI-TFVLIISAYRYTNLNLVDSCRKLFLSMKTI-YNIEPT--SEH 579 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~ 579 (812)
.+...+.+.|++++|+++|++....-... +.. .|...+-.+.. .|++..|.+.|+..... .++..+ -..
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~--~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA--MGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34555666777777777777666533221 111 11112223333 56777777777665531 122222 223
Q ss_pred HHHHHHHHhh--cCChHHHHHHHHhCC
Q 040319 580 YASLVSVLGY--WGFLEEAEETINNMP 604 (812)
Q Consensus 580 y~~li~~l~~--~g~~~~A~~~~~~m~ 604 (812)
...|++++-. ...+++|..-|+++.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3444555432 234566666666654
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.12 Score=49.51 Aligned_cols=139 Identities=13% Similarity=0.042 Sum_probs=99.2
Q ss_pred eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCc-----hhHHHHH
Q 040319 405 WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSD-----LGVANSM 479 (812)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~L 479 (812)
-+.++..+.-.|.+.-.+..+++..+ .....+......+.+.--+.|+.+.+...++.+.+..-..+ ..+....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566666667778888888888877 55555666677777777888999999998887776533333 3333344
Q ss_pred HHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLII 546 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 546 (812)
...|.-++++..|...|+++.. .|++.-|.-.-.....|+..+|++..+.|++ ..|...+-.+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 4567778889999999988775 5566666655556668999999999999998 677765555443
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.44 E-value=0.0058 Score=41.88 Aligned_cols=41 Identities=24% Similarity=0.475 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHh
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 651 (812)
+|..+..++...|+.+.|+++++++++.+|+|+..+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57788889999999999999999999999999998888764
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.41 E-value=0.015 Score=57.96 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=66.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHH
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILVS 650 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 650 (812)
.|..-+..+.+.|++++|...|+.+. ..|+ +..+..+..++...|+.+.|...++++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 45555555566677888877777654 3343 2355567777888888888888888888877764 44556668
Q ss_pred hhhhhCCCcchHHHHHHHHHh
Q 040319 651 NLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 651 ~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888887744
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.38 E-value=0.036 Score=51.82 Aligned_cols=91 Identities=11% Similarity=0.153 Sum_probs=69.1
Q ss_pred CCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCC--------------CCchHHHHH
Q 040319 501 SHDIVSWNGLIAGHLL-----HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYT--------------NLNLVDSCR 561 (812)
Q Consensus 501 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--------------~~g~~~~a~ 561 (812)
.+|-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.||+.+=+. -..+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3666666666666654 366666777778888888888888888888876431 023456789
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGF 592 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~ 592 (812)
+++++|.. +|+.||.+++..+++.+|+.+.
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 99999997 9999999999999999988886
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.37 E-value=0.0096 Score=46.32 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=53.4
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
.+|.+.+++++|++.++.+. ..| +...|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46788899999999998865 556 566777788888999999999999999999999877655443
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.37 E-value=0.011 Score=61.96 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=31.9
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHh-CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINN-MPFQPKV----SVWRALLDSCRIRLNTTIGKRVAKHILAM 638 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~-m~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 638 (812)
...|+.+..+|.+.|++++|+..|++ +.+.|+. .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555555555555555555555 2244432 23555555555555555555555555554
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.33 E-value=0.042 Score=58.17 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=62.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 040319 168 SWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFY 247 (812)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 247 (812)
|..++|+.|.+.|..+.++.+++.= ...|+-||.+||+.++..+.+.|++..|.++...|...+...+..++.--+..+
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~-~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNR-LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhCh-hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 4457888888888888888888776 677888888888888888888888888888888888777666666655555555
Q ss_pred Hhc
Q 040319 248 TKC 250 (812)
Q Consensus 248 ~~~ 250 (812)
.+.
T Consensus 184 ~~~ 186 (429)
T PF10037_consen 184 YKY 186 (429)
T ss_pred HHh
Confidence 444
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.29 E-value=0.88 Score=46.37 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=80.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCCh
Q 040319 517 HRQGDEALAVWSSMEKASIKPDAI--TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFL 593 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~ 593 (812)
.|+++.|.+-|+-|.. .|... -...|.-.--. .|..+.|.++-+..-. ..|. ...+.+.++..+..|++
T Consensus 133 eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr--~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 133 EGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQR--LGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDW 204 (531)
T ss_pred cCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHh--cccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCCh
Confidence 4566666666666554 22211 11112111223 5666666666555533 3444 34556666667777777
Q ss_pred HHHHHHHHhCC----CCCCHH--HHHHHHHH---HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHH
Q 040319 594 EEAEETINNMP----FQPKVS--VWRALLDS---CRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 594 ~~A~~~~~~m~----~~p~~~--~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
+.|+++++.-. ++||.. .--.||.+ -....+...|.....+..++.|+-...-+.-+..|++.|+..++..
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh
Confidence 77777765532 445432 12223322 2234456667777777777777766666667777777777777777
Q ss_pred HHHHH
Q 040319 665 VREDM 669 (812)
Q Consensus 665 ~~~~m 669 (812)
+++.+
T Consensus 285 ilE~a 289 (531)
T COG3898 285 ILETA 289 (531)
T ss_pred HHHHH
Confidence 77665
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.25 E-value=0.038 Score=47.45 Aligned_cols=86 Identities=14% Similarity=-0.006 Sum_probs=62.8
Q ss_pred HHHHHhhcCChHHHHHHHHhCC---CC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC---CCchHHHHHhhhh
Q 040319 583 LVSVLGYWGFLEEAEETINNMP---FQ-PK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ---DPATYILVSNLYS 654 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~---~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~ 654 (812)
+..++-..|+.++|+.++++.. .. ++ ...+-.+.+.++..|++++|..++++.++-.|+ +......++-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445566777777777777643 11 11 335556777788889999999999888888787 6667777888889
Q ss_pred hCCCcchHHHHHHH
Q 040319 655 SSGRWHNSELVRED 668 (812)
Q Consensus 655 ~~g~~~~a~~~~~~ 668 (812)
..|+++||.+..-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999887654
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.16 E-value=0.043 Score=51.34 Aligned_cols=106 Identities=12% Similarity=0.177 Sum_probs=79.4
Q ss_pred HHHHHhcC--CCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----------
Q 040319 52 AYKIFYGL--SSPNVVSFTSLISGLAKL-----GREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLL----------- 113 (812)
Q Consensus 52 A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------- 113 (812)
-...|+.. ..+|..+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 457888888888888754 566666777888999999999999999998875421
Q ss_pred -----ChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHH
Q 040319 114 -----ELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKL 157 (812)
Q Consensus 114 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~ 157 (812)
+-+-|..++++|...|+-||..++..|+..+++.+..+...+++
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rm 161 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRM 161 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHH
Confidence 23557888999999999999999999999998877333444443
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.12 E-value=0.83 Score=49.48 Aligned_cols=226 Identities=18% Similarity=0.157 Sum_probs=115.2
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcC
Q 040319 102 FVAILTACIRLLELELGFQI--HALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNE 179 (812)
Q Consensus 102 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~ 179 (812)
++..=++|.+.++..--+-+ ++.+.+.|-.|+...... .++-.| .+.+|-++|. ++
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~---~~Ay~g-KF~EAAklFk------------------~~ 658 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLAD---VFAYQG-KFHEAAKLFK------------------RS 658 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHH---HHHhhh-hHHHHHHHHH------------------Hc
Confidence 33344455555444333222 445566676676554332 233344 6667777664 35
Q ss_pred CChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 040319 180 FEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVAL 259 (812)
Q Consensus 180 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 259 (812)
|....|+++|.+| +- --..+-+...|+.++-+.+.+.-... ..+..--.+...++...|+.++|..
T Consensus 659 G~enRAlEmyTDl-RM----------FD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~- 724 (1081)
T KOG1538|consen 659 GHENRALEMYTDL-RM----------FDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIE- 724 (1081)
T ss_pred CchhhHHHHHHHH-HH----------HHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhh-
Confidence 6666777777777 32 11222333444444433333222111 1111111234455666677776666
Q ss_pred HhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 040319 260 LERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTS 339 (812)
Q Consensus 260 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 339 (812)
....+|-.+-+.++-.++...+..+...+..-+.+...+.-|-++|.+|-+.
T Consensus 725 -----------------i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------- 776 (1081)
T KOG1538|consen 725 -----------------ICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------- 776 (1081)
T ss_pred -----------------hhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----------
Confidence 2334455555555555555444444444444444455555666666655331
Q ss_pred HHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChh
Q 040319 340 VVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPE 419 (812)
Q Consensus 340 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~ 419 (812)
.+++++....+++++|..+-++.+.-.+|+. .....-++...+++
T Consensus 777 ---------------------------------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy--~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 777 ---------------------------------KSLVQLHVETQRWDEAFALAEKHPEFKDDVY--MPYAQWLAENDRFE 821 (1081)
T ss_pred ---------------------------------HHHhhheeecccchHhHhhhhhCcccccccc--chHHHHhhhhhhHH
Confidence 2466677788888899888888874344332 22333344555555
Q ss_pred hHHHHHH
Q 040319 420 HAILLFH 426 (812)
Q Consensus 420 ~A~~~~~ 426 (812)
||.+.|.
T Consensus 822 EAqkAfh 828 (1081)
T KOG1538|consen 822 EAQKAFH 828 (1081)
T ss_pred HHHHHHH
Confidence 5555443
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.11 E-value=0.087 Score=45.23 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=66.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVS 585 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~ 585 (812)
.+..++-..|+.++|+.+|++....|..++. ..+..+-+.+.. .|++++|..+|+.....+.-.+ +......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~--LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN--LGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3456777889999999999999998877653 456667778888 9999999999998876431111 1222233445
Q ss_pred HHhhcCChHHHHHHHHh
Q 040319 586 VLGYWGFLEEAEETINN 602 (812)
Q Consensus 586 ~l~~~g~~~~A~~~~~~ 602 (812)
++...|+.+||++.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77888888888877644
No 207
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.04 E-value=0.035 Score=46.79 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=75.1
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC----CchHHHHHhhhhhCCC
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD----PATYILVSNLYSSSGR 658 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~ 658 (812)
-+++..|+++.|++.|.+.. +-| .+..|+.-..+++.+|+.++|..-+++++++.-+. -.+|+.-+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35678899999999998854 444 78899999999999999999999999999985432 2458889999999999
Q ss_pred cchHHHHHHHHHhCCC
Q 040319 659 WHNSELVREDMREKGF 674 (812)
Q Consensus 659 ~~~a~~~~~~m~~~g~ 674 (812)
-+.|..-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988876554
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.94 E-value=0.015 Score=58.75 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHH---hhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-----C---CC
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLS---MKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-----F---QP 607 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-----~---~p 607 (812)
..|..|-.-|.- .|+++.|+...+. +.+++|-.. ....++.+.+++.-.|+++.|.+.++.-. + ..
T Consensus 196 Ra~GnLGNTyYl--LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 196 RAYGNLGNTYYL--LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred chhcccCceeee--eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 345555555555 7899999877663 223344333 24578888888999999999999887632 1 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc----C--CCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAM----E--PQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.+....+|.+.|....+++.|+....+-+.+ + .....++..|++.|...|..+.|..+.+.-.
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3556678888888888999998877665543 2 2235678899999999999999988766554
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.90 E-value=3.6 Score=45.29 Aligned_cols=246 Identities=14% Similarity=0.090 Sum_probs=120.5
Q ss_pred ChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC--------hhhHHHHHHHHHhcCChHHH
Q 040319 48 HVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRMRS-EGIVPN--------EHSFVAILTACIRLLELELG 118 (812)
Q Consensus 48 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~--------~~~~~~ll~~~~~~~~~~~a 118 (812)
.+++|.+..+.-|.| ..|..|...-...-.++-|...|-+... .|++.- ...-..=+ -+-.|.+++|
T Consensus 678 gledA~qfiEdnPHp--rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNPHP--RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcCCch--HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHh
Confidence 455666665554444 4566665554555555555555544322 122110 00000011 1123555666
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHcCCChhHHHHHHHHhH
Q 040319 119 FQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHK-----DTVSWNTVISSVVNEFEYEKAFELFRDMK 193 (812)
Q Consensus 119 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 193 (812)
.+++-.+-+.. .-|.++.+.| +.-...++++..... -..+|+.+-..++....+++|.+.|..-
T Consensus 754 ek~yld~drrD---------LAielr~klg-DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~- 822 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLG-DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC- 822 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhh-hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 65555444332 1244555555 555555555443321 1235555555555555555555555433
Q ss_pred hcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHH
Q 040319 194 RDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTE 273 (812)
Q Consensus 194 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 273 (812)
.. -...+.++....++++-+.+ ...++-+....-.+.+|+.+.|.-++|.+.+-+-..|. .
T Consensus 823 ~~---------~e~~~ecly~le~f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----a 883 (1189)
T KOG2041|consen 823 GD---------TENQIECLYRLELFGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----A 883 (1189)
T ss_pred cc---------hHhHHHHHHHHHhhhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----H
Confidence 11 01122222222222221111 12245566666677777788887777777665554332 2
Q ss_pred HHHHHHhhCChhHHHHHhccCCCCCcccHH--------------HHHHHHHhCCChHHHHHHHHHHHH
Q 040319 274 IIIAYMEFGYVDLAVEIFDKMPEKNSVSYN--------------ALLAGYCKNGKAMEALGLFVKLLE 327 (812)
Q Consensus 274 li~~~~~~g~~~~A~~~f~~m~~~d~~~~~--------------~li~~~~~~g~~~~A~~l~~~m~~ 327 (812)
-+..+...+++.+|.++-++..-|.+.+.- --|..+.+.|++-+|.+++.+|.+
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 344566667777777777665544433321 124455666777777777777754
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.055 Score=55.45 Aligned_cols=63 Identities=6% Similarity=0.018 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..++..|...|.+.+.+..|.....++++++|+|..+.+.-+.+|...|.++.|...++++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345666777788899999999999999999999999999999999999999999999999864
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.76 E-value=0.31 Score=49.74 Aligned_cols=116 Identities=9% Similarity=-0.056 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhh---hc-CccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--------CCCC
Q 040319 541 TFVLIISAYRYTNLNLVDSCRKLFLSMKT---IY-NIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--------FQPK 608 (812)
Q Consensus 541 t~~~ll~a~~~~~~g~~~~a~~~~~~m~~---~~-~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--------~~p~ 608 (812)
.+..+..++.. .|.++.|.+.|+.... +. .-.......-+|.+.|.-...++.|+..+++-. ..-.
T Consensus 237 A~sNlgN~hif--lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 237 AHSNLGNCHIF--LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred hhcccchhhhh--hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444444 5556666555553321 00 011112233344555555555666666554421 1123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-----CC-CCchHHHHHhhhhhCCC
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAME-----PQ-DPATYILVSNLYSSSGR 658 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----p~-~~~~~~~l~~~y~~~g~ 658 (812)
...+.+|.+++...|+.++|...+++.+++. |. ....-..|++.-...|.
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 4566788999999999999999888877642 22 12234455555555554
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=2.1 Score=44.21 Aligned_cols=50 Identities=8% Similarity=-0.052 Sum_probs=24.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDA-----ITFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
.+.|++.+|.+.|.+.+. +.|+. ..|.....+..+ .|+.++|+.-.+...
T Consensus 260 fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~r--Lgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIR--LGRLREAISDCNEAL 314 (486)
T ss_pred hhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcc--cCCchhhhhhhhhhh
Confidence 345556666666665555 33433 223333333334 555555555554443
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.55 E-value=1.1 Score=46.71 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=97.1
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC-CCh------hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS-HDI------VSWNGLIAGHLL---HRQGDEALAVWSSMEKASIKPDAITFVLIISA 548 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 548 (812)
|+-.|-...+++.-.++++.+.. |+. ..--...-++.+ .|+.++|++++..+....-.++.-|+..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34457777777777777777765 211 111123334445 67888888888886666666666676665554
Q ss_pred hcC-------CCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH----HHHHHH---Hh-----CCCCC--
Q 040319 549 YRY-------TNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE----EAEETI---NN-----MPFQP-- 607 (812)
Q Consensus 549 ~~~-------~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~----~A~~~~---~~-----m~~~p-- 607 (812)
|-. ......++|+..|.+.- .+.|+..+=-.++-++.-+|.-. +..++. .. -...+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 321 11345677777776553 35566544444444555555422 222222 11 11233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
|--.+.+++.++...||.+.|.+++++++.+.|.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 4445667899999999999999999999999875
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=5.5 Score=44.51 Aligned_cols=301 Identities=13% Similarity=0.030 Sum_probs=153.3
Q ss_pred HhHhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCCh---hhHHHHHhcCCC--CChhhHHHHHHHHHhcCCh
Q 040319 6 RLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHV---ADAYKIFYGLSS--PNVVSFTSLISGLAKLGRE 80 (812)
Q Consensus 6 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~ 80 (812)
.-....+.+..|.++-..+...-. ....++.....-+.+..+. +-+..+-+++.. ...++|..+.+--...|++
T Consensus 445 ~Rl~~r~~Y~vaIQva~~l~~p~~-~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~ 523 (829)
T KOG2280|consen 445 DRLVDRHLYSVAIQVAKLLNLPES-QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRF 523 (829)
T ss_pred HHHHhcchhHHHHHHHHHhCCccc-cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcH
Confidence 334444566666666554421111 1156666666666665322 223333344444 4556788787777788888
Q ss_pred hHHHHHHHHHHHCC----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCC----------C-chHHHHHHHHHhh
Q 040319 81 EEAIELFFRMRSEG----IVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCV----------D-SVFVTNALMGLYG 145 (812)
Q Consensus 81 ~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----------~-~~~~~~~li~~y~ 145 (812)
+-|..+++.=...+ +..+..-+...+.-+...|+.+...+++-++...-.. | ...+|.- |+
T Consensus 524 ~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~----~~ 599 (829)
T KOG2280|consen 524 ELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ----FM 599 (829)
T ss_pred HHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH----HH
Confidence 88888776432222 1123345666777778888888777766655543110 1 1111111 12
Q ss_pred hcCCCHHHHHHHHhcCC-------------------CCCcchHHHHHHHHHcCCC----------hhHHHHHHHHhHhcC
Q 040319 146 KFSFCLDYLLKLFDELP-------------------HKDTVSWNTVISSVVNEFE----------YEKAFELFRDMKRDN 196 (812)
Q Consensus 146 ~~g~~~~~a~~~f~~~~-------------------~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~ 196 (812)
|.. +.......++.-. ++-...-......+.+... ...-+.+++.+..+.
T Consensus 600 r~~-~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 600 RHQ-DRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred Hhh-chhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 1111111111000 0000011112222322222 111122333332233
Q ss_pred CCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHH
Q 040319 197 GFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIII 276 (812)
Q Consensus 197 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~ 276 (812)
|......|.+-.+.-+...|+..+|.++-.+.. -||...|--=+.+++..+++++-+++-+..+. +..|..+..
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHH
Confidence 444455556666666666677777766655543 46666666666677777777766655544443 566677777
Q ss_pred HHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHH
Q 040319 277 AYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFV 323 (812)
Q Consensus 277 ~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 323 (812)
++.+.|+.++|.+.+.+...-. -...+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHHHH
Confidence 7777777777777776654311 45566667777666665543
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=95.30 E-value=0.41 Score=50.58 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhcC--------CCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhh
Q 040319 520 GDEALAVWSSME-KASIKPDAITFVLIISAYRY--------TNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGY 589 (812)
Q Consensus 520 ~~~A~~l~~~m~-~~g~~pd~~t~~~ll~a~~~--------~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~ 589 (812)
.+.|+.+|.+.. .+.+.|+...-...+.-|.. .......+|.+.-+...+ +.| |......+..+++-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 367888899988 12277876333222222211 013455666666666654 334 46667777777788
Q ss_pred cCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH--HhhhhhCCCcchHHHH
Q 040319 590 WGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV--SNLYSSSGRWHNSELV 665 (812)
Q Consensus 590 ~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~y~~~g~~~~a~~~ 665 (812)
.|+++.|..+|++.. +.|| +.+|......+...|+.+.|.+..+++++++|...++-+.- .++|... ..++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 888999999999865 6775 56777777778888999999999999999999865554443 3345544 46777776
Q ss_pred HHH
Q 040319 666 RED 668 (812)
Q Consensus 666 ~~~ 668 (812)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 543
No 216
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.28 E-value=4.6 Score=42.36 Aligned_cols=162 Identities=11% Similarity=0.059 Sum_probs=101.2
Q ss_pred hccCCchHHHHHHHHHHHhccCCC------ccchHHHHHHHHccCChhhHHHHHhcCCC--CChhhHHHHHHHH--HhcC
Q 040319 9 VQCGEVSLAKAIHASLIKLLLEQD------TRFGNPLISAYLKLGHVADAYKIFYGLSS--PNVVSFTSLISGL--AKLG 78 (812)
Q Consensus 9 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g 78 (812)
..++++.++..+|..+-+.- ..+ -...+.++++|.. .+++.....+....+ | ...|-.|..++ .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 45789999999999887553 222 2345678888864 344444444443332 3 33455555554 4778
Q ss_pred ChhHHHHHHHHHHHC--CCCC------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC----CCchHHHHHH
Q 040319 79 REEEAIELFFRMRSE--GIVP------------NEHSFVAILTACIRLLELELGFQIHALIVKMGC----VDSVFVTNAL 140 (812)
Q Consensus 79 ~~~~a~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~l 140 (812)
.+++|++.+..-.+. +..| |...=+....++...|++.+|+.+++.++..=+ ..++.+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999988876654 3222 112224456788899999999999888876544 4788999998
Q ss_pred HHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHc
Q 040319 141 MGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVN 178 (812)
Q Consensus 141 i~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~ 178 (812)
+-++++.= -+ ++-+.+...=..-|-.||..|.+
T Consensus 174 vlmlsrSY-fL----El~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 174 VLMLSRSY-FL----ELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHhHHH-HH----HHHHhcccccChHHHHHHHHHHH
Confidence 88888754 22 22222332223345566666654
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.23 E-value=0.13 Score=51.45 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=52.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhc
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYW 590 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 590 (812)
...|++++|+..|+.+++ ..|+. ..+..+..++.. .|++++|...|+.+.+.+.-.|
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~--~g~~~~A~~~f~~vv~~yP~s~--------------- 214 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYN--KGKKDDAAYYFASVVKNYPKSP--------------- 214 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCc---------------
Confidence 445667777777777766 44553 233334444444 5555555555555544221111
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 040319 591 GFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 591 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 644 (812)
.....|..+...+...|+.+.|...++++++..|+...
T Consensus 215 ----------------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 215 ----------------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred ----------------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 01223333444555677777777777777777776543
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.06 E-value=3.6 Score=39.92 Aligned_cols=193 Identities=16% Similarity=0.113 Sum_probs=136.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMP-----SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLII 546 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll 546 (812)
..........+...+.+..+...+.... ......+..+...+...+....+.+.+.........+.. ..+...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL- 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH-
Confidence 4566667777888888888877776643 244556667777777788888888888888874333322 222221
Q ss_pred HHhcCCCCchHHHHHHHHHHhhhhcCccC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC--HHHHHHHHHHH
Q 040319 547 SAYRYTNLNLVDSCRKLFLSMKTIYNIEP----TSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK--VSVWRALLDSC 619 (812)
Q Consensus 547 ~a~~~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~--~~~~~~ll~~~ 619 (812)
.++.. .|.++++...|..... ..| ....+......+...++.++|...+.+.. ..|+ ...+..+...+
T Consensus 138 ~~~~~--~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 138 GALYE--LGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHH--cCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 14556 8889999988888743 333 23344444445667888999998888755 3333 56777888888
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...++.+.+...+..+++..|.....+..++..+...|+++++.....+...
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888999999999999999887666777788888877778888887777643
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=1.3 Score=42.77 Aligned_cols=164 Identities=8% Similarity=-0.006 Sum_probs=86.9
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCC--CChhHH--------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSW--------NGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLI 545 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~--------~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 545 (812)
+++|...|.-..-+++-...|+.-.. ..+..| +.++..+.-+|.+.-.+.++.+.++..-.-+..-...+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45666666655555555555544332 222333 45666666677788888889988885433444556666
Q ss_pred HHHhcCCCCchHHHHHHHHHHhhhhcCc----cCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 040319 546 ISAYRYTNLNLVDSCRKLFLSMKTIYNI----EPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSC 619 (812)
Q Consensus 546 l~a~~~~~~g~~~~a~~~~~~m~~~~~~----~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~ 619 (812)
.+.-.+ .|+++.|..+|+...+..+. .-..-.--.+...+.-++++.+|...+.+.+ ..| |+...|.-.-..
T Consensus 219 gr~~MQ--~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 219 GRISMQ--IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred HHHHHh--cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence 666667 89999999999877653221 1111122222233344445555555555544 222 122111111111
Q ss_pred HhcCCHHHHHHHHHHHHccCCC
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
.-.|+...|.+..+.+.+..|.
T Consensus 297 lYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 297 LYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHHhccCCc
Confidence 1235555555555555555554
No 220
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.87 E-value=6.9 Score=46.20 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=77.6
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC--CCCchHHHHHHHH
Q 040319 487 CNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY--TNLNLVDSCRKLF 564 (812)
Q Consensus 487 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~g~~~~a~~~~ 564 (812)
+++++|+.-+.++. ...|+-.+..--++|.+.+|+.+ .+|+...+..+..+|+. ...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 55666666665554 22334444444566666666665 45565555444444321 0034444444444
Q ss_pred HHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 565 LSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW--RALLDSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 565 ~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
+..-+ ..--+.+|-.+|++.+|+.+-.++....|...- ..|..-+...+..-+|-.+.+..++
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----- 1027 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----- 1027 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-----
Confidence 43321 011234455666677777666666544444332 4455556655555544444433322
Q ss_pred CchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 643 PATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 643 ~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
-...-..+|.+.-.|++|.++-..-
T Consensus 1028 --d~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1028 --DPEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred --CHHHHHHHHhhHhHHHHHHHHHHhc
Confidence 1222344566666777777665443
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.85 E-value=0.031 Score=44.13 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc----CCC---CCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAM----EPQ---DPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+++.+...+...|++++|+..+++++++ .|+ -..++..++.+|...|++++|.+++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555555555543 111 2446777888888888888888887765
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.84 E-value=0.069 Score=48.32 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...++..+...|+.+.|...+++++..+|-+...|..+..+|...|+..+|.+++++++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999999999999999999999999999988853
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.32 Score=48.10 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=17.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
|...|-.|...|..+|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445555555555555555555555555555
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=94.61 E-value=0.33 Score=51.21 Aligned_cols=115 Identities=7% Similarity=0.017 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhh---------cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 040319 556 LVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGY---------WGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRL 623 (812)
Q Consensus 556 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~---------~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~ 623 (812)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++.. +.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 466788888888744457776 4455554443321 223556777776644 555 6777777777777788
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 624 NTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 624 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+.+.|...++++..++|+.+..+...+++..-.|+.++|.+.+++..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999998853
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.52 E-value=0.047 Score=43.03 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC--CC---CC-HHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKAS--IK---PD-AITFVLIISAYRYTNLNLVDSCRKLFLSM 567 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~---pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m 567 (812)
++.+...|...|++++|+..|++.++.. .. |+ ..++..+...+.. .|++++|.+++++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~--~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR--LGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Confidence 3444444444444444444444443210 11 11 1334444445555 55555555555544
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=11 Score=42.31 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=77.0
Q ss_pred HHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~ 558 (812)
-+.-+..-|+..+|.++-.+..-||-..|--=+.+++..+++++-+++-+.+.. .+-|.....+|.+ .|+.+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~--~~n~~ 761 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLK--QGNKD 761 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHh--cccHH
Confidence 344456678888888888888888888888888888888888777666555431 4556667778888 88888
Q ss_pred HHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 559 SCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
||.+++-.... +.-.+.+|.+.|.+.+|.++--+
T Consensus 762 EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 762 EAKKYIPRVGG----------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhhhhhccCC----------hHHHHHHHHHhccHHHHHHHHHH
Confidence 88888754432 22567888888888888776433
No 227
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=12 Score=42.45 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=97.4
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 040319 174 SSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRV 253 (812)
Q Consensus 174 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 253 (812)
.-+.+.|++++|...|-+-. .-+.| +.++.-+.....+..--.+++.+.+.|+. +...-+.|+.+|.|.++.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 34557899999998886541 12233 34555555556666666777788888864 344457799999999999
Q ss_pred HHHHHHHhcCCCCcch--hHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040319 254 KDVVALLERMPVMDII--TLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLV 331 (812)
Q Consensus 254 ~~A~~l~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 331 (812)
++-.++.+... .+.. -....+..+.+.+-.++|.-+-.+... +.. .+--.+-..+++++|++.+..|.-...-
T Consensus 448 ~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~---vl~ille~~~ny~eAl~yi~slp~~e~l 522 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEW---VLDILLEDLHNYEEALRYISSLPISELL 522 (933)
T ss_pred HHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHH---HHHHHHHHhcCHHHHHHHHhcCCHHHHH
Confidence 99988888776 2222 345566777777777777776655443 222 2223344567888998888876443333
Q ss_pred CCHhHHH
Q 040319 332 LTEFTLT 338 (812)
Q Consensus 332 p~~~t~~ 338 (812)
+...+|.
T Consensus 523 ~~l~kyG 529 (933)
T KOG2114|consen 523 RTLNKYG 529 (933)
T ss_pred HHHHHHH
Confidence 3333443
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.03 E-value=0.27 Score=42.67 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=37.4
Q ss_pred cCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcC
Q 040319 571 YNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP----FQPKVSVWRALLDSCRIRL 623 (812)
Q Consensus 571 ~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~ 623 (812)
..+.|+.....+++.+|+..|++..|+++++... ++-+..+|..|+.-+....
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4566777888888888888888888888776532 4445778888887655443
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.03 E-value=0.23 Score=52.32 Aligned_cols=64 Identities=8% Similarity=-0.133 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch---HHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT---YILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...|..+..++...|++++|...++++++++|+++.+ |..++.+|...|+.++|.+.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555532 55555555555555555555555443
No 230
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.92 E-value=2.8 Score=41.51 Aligned_cols=59 Identities=12% Similarity=-0.012 Sum_probs=36.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchH----HHHHHHHhcCCChHHHHHHHHHHHHhC
Q 040319 171 TVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTI----STLLTACTGCFVLMEGRAVHAHAIRIG 232 (812)
Q Consensus 171 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~g 232 (812)
.....+.+.|++++|++.|+.+ .. .-|+.... ..+..++-+.++.+.|...++..++.-
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l-~~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEAL-DN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-HH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3445556678888888888877 33 23333221 234455667777777777777777653
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.92 E-value=9.6 Score=39.98 Aligned_cols=133 Identities=11% Similarity=0.079 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchH-H
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKAS-IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHY-A 581 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~ 581 (812)
...|-..+..-.+..-.+.|..+|-+..+.| +.|+...+++++.-++. |+...|..+|+.-... -||...| .
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~---~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT---GDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc---CCcchHHHHHHHHHHh---CCCchHHHH
Confidence 3456666666666666777778888887777 55666777777776553 7777777777754432 2444333 3
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP--FQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
-..+-|.+-++-+.|..+|++.. +..+ ..+|..++.--..-|++..+...-++..++-|+.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 45566677788888888887543 3333 5688888888888888888888888888888873
No 232
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.90 E-value=9.8 Score=43.55 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCC
Q 040319 166 TVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCF 216 (812)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~ 216 (812)
...| ++|-.+.+.|++++|.++.... +.........|...+..+....
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~--~~~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANEN--RNQFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHT--GGGS-TTTTHHHHHHHHCTTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHh--hhhhcchhHHHHHHHHHHHhCC
Confidence 3445 5778889999999999999665 3456677778888899887653
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.88 E-value=1 Score=47.79 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=111.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
-+..+.+.-+++-++.++ +.||..+-..+|.. -. +..+.++.++|++..+. | . ..|++....+
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILLAE-Ee--A~Ti~Eae~l~rqAvkA-g----E-------~~lg~s~~~~ 241 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILLAE-EE--ASTIVEAEELLRQAVKA-G----E-------ASLGKSQFLQ 241 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc-cc--ccCHHHHHHHHHHHHHH-H----H-------Hhhchhhhhh
Confidence 345667777778888888 88988776666543 12 45688899888877651 0 0 0011111000
Q ss_pred ---HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 595 ---EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ--DPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 595 ---~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
...+.+..-...|-..+-..|...+++.|..++|.+.++.+++..|. +-.....|+..|-..+++.|+..+..+-
T Consensus 242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 11111111112333445556777788889999999999999887765 4567888999999999999999999887
Q ss_pred HhCCCCCCCceeEEEECCEEEEE-eeCCCCCcc-------hHHHHHHHHHHHHHHHHcCcccC
Q 040319 670 REKGFRKHPSRSWIIHQNKVHSF-YVRDKSHPR-------EKDIYSGLEILILECLKAGYVPD 724 (812)
Q Consensus 670 ~~~g~~~~~~~s~~~~~~~~~~f-~~~~~~~~~-------~~~i~~~l~~l~~~~~~~g~~~~ 724 (812)
.+...+|....+|..- -. .| ..+|+..|+ +......++-+.+.++..-++|.
T Consensus 322 dDi~lpkSAti~YTaA--LL-kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 322 DDISLPKSATICYTAA--LL-KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred ccccCCchHHHHHHHH--HH-HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 6554545444433200 00 00 012222221 11223345667777777767664
No 234
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.87 E-value=1.7 Score=41.71 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=93.5
Q ss_pred HHHhhhcCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcC
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPS--HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRY 551 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 551 (812)
...+...|++++|...|+.+.. |+ ....-.++.++-+.|++++|...|++.++ ..|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHH
Confidence 3445667888888888877764 32 23455667788888888888888888887 55654 333333322221
Q ss_pred -----------CCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 040319 552 -----------TNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW--RALLDS 618 (812)
Q Consensus 552 -----------~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~ 618 (812)
...+...+|...|+.+.+ -|-......+|...+..+. +...- ..+..-
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELR---NRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 012333445555555444 3333444445544443321 00011 113345
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHhhhhhCCCcchHHH
Q 040319 619 CRIRLNTTIGKRVAKHILAMEPQDP---ATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 619 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~ 664 (812)
|.+.|...-|..-++.+++--|+.+ .+...++..|.+.|..+.|..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 7788999999999999999888754 345678888999998874443
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.76 E-value=0.52 Score=40.95 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=68.0
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCC
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYT 552 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 552 (812)
..++.+++-++++.|+++....+.+..=..|+ .+-...+. --......|+..+..+++.+|+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~- 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY- 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHh-
Confidence 45667777778888888777777765422111 00000110 11123478999999999999998
Q ss_pred CCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHH
Q 040319 553 NLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVL 587 (812)
Q Consensus 553 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l 587 (812)
.|++..|.++.+...+.|+++-+...|..|..-.
T Consensus 65 -n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 65 -NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred -cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999888888888887643
No 236
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.73 E-value=0.12 Score=32.87 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
.+|..+...+...|+.++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888889999999999999999999986
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.56 E-value=3.4 Score=35.44 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=77.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
...|..++..++..+...+. +..-++-++--... .-+-+-..+.++++-+-+.+.|- ...-.+|.+|.+.|...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiD--aa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIID--AADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHH--H--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---Cccccceeeeecch--hhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchH
Confidence 34677788888888776632 22333333311111 12223334444444443333221 11223444454444433
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 595 EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 595 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
| ...--|++...+|..++-.+++..+++-+..+|....-+++.|.+.|+..++.+++++.-++|+
T Consensus 87 e---------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 E---------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp H---------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred H---------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2 3344566778889999888999888865555688999999999999999999999999988887
Q ss_pred C
Q 040319 675 R 675 (812)
Q Consensus 675 ~ 675 (812)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=1.4 Score=45.64 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=73.8
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
..+..+.-++.+.+++.+|++...+.. ..| |.-..--=..+|...|+++.|+..++++++++|+|-.+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 345666777788888888888877754 444 555655666788889999999999999999999999999999888887
Q ss_pred CCCcchH-HHHHHHHHh
Q 040319 656 SGRWHNS-ELVREDMRE 671 (812)
Q Consensus 656 ~g~~~~a-~~~~~~m~~ 671 (812)
..+.++. .+++..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 7776655 778888854
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.42 E-value=0.19 Score=31.74 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
..|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888874
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.40 E-value=0.9 Score=44.17 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=85.1
Q ss_pred hhHHHHHhcCC--CCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---------
Q 040319 50 ADAYKIFYGLS--SPNVVSFTSLISGLAKL-----GREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLL--------- 113 (812)
Q Consensus 50 ~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--------- 113 (812)
-..+..|...+ .+|..+|-+++..+... +..+=....+..|.+-|+.-|..+|..||..+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677776 68888998888888654 456666677889999999999999999998875432
Q ss_pred -------ChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCC
Q 040319 114 -------ELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELP 162 (812)
Q Consensus 114 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~ 162 (812)
.-.-+..++++|...|+-||..+-..|+..+++.+.......++.--||
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1233677888999999999999988899999888755555555555555
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.32 E-value=0.78 Score=44.57 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=79.5
Q ss_pred HHHHHccCC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCC-----------
Q 040319 492 AIKAFNKMP--SHDIVSWNGLIAGHLLH-----RQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTN----------- 553 (812)
Q Consensus 492 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----------- 553 (812)
.+..|.... ++|-.+|-+++..+..+ +..+--...++.|.+-|+.-|..+|..||..+=+.+
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 57888888888888654 456666777889999999999999999999875411
Q ss_pred ---CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 554 ---LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 554 ---~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
-..-+=++.++++|.. +|+.||.++-..++.+++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 0112347889999996 999999999999999999999743
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.12 E-value=0.49 Score=42.72 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhh----hhcCccCCcc
Q 040319 508 NGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMK----TIYNIEPTSE 578 (812)
Q Consensus 508 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~----~~~~~~p~~~ 578 (812)
..++..+...|++++|+.+.+++.. ..|- ...+..++.++.. .|+..+|.++|+.+. ++.|+.|+..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~--~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAA--QGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3344455556666666666666655 4443 3455555666655 666666666555442 2345555543
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.11 E-value=2.2 Score=38.03 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=22.9
Q ss_pred HHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhc
Q 040319 442 TSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC 486 (812)
Q Consensus 442 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 486 (812)
..++..+...+.......+++.+.+.+ ..+....+.|+..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 344555555555555555555555544 24444555555555543
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.81 E-value=5.8 Score=42.39 Aligned_cols=92 Identities=13% Similarity=0.119 Sum_probs=47.5
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCC-----
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPK--VSVWRALLDSCRIRLN----- 624 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~~~----- 624 (812)
.|..++|++.|+.|.++....-.......|+++|...+++.++..++.+-. .-|. ...|++.|-..+.-++
T Consensus 272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e 351 (539)
T PF04184_consen 272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE 351 (539)
T ss_pred hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch
Confidence 555555555555554432211123344455566666666666666655543 1222 2344444433333332
Q ss_pred ----------HHHHHHHHHHHHccCCCCCch
Q 040319 625 ----------TTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 625 ----------~~~a~~~~~~~~~~~p~~~~~ 645 (812)
...|.++..++++.+|.-+.+
T Consensus 352 ~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 352 AASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 123567888899999875543
No 245
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.81 E-value=3.3 Score=39.77 Aligned_cols=141 Identities=13% Similarity=0.189 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHH
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYAS 582 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 582 (812)
+-.....+.+.|++.+|++.|+++... -|+. .....+..++-. .|++++|...|+...+.+.-.|... +.-
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~--~~~y~~A~~~~~~fi~~yP~~~~~~-~A~ 82 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYK--QGDYEEAIAAYERFIKLYPNSPKAD-YAL 82 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHH-TT-TTHH-HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCcchh-hHH
Confidence 334455667788999999999998873 3432 334445556666 8888888888888877554333321 111
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc-----------------h
Q 040319 583 LVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA-----------------T 645 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~ 645 (812)
...+++.-....... ...+..+....|...++.+++.-|+++- .
T Consensus 83 Y~~g~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 83 YMLGLSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 111111100000000 0011122334445555555555555332 2
Q ss_pred HHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 646 YILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 646 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
-..++..|.+.|+|..|..-++.+.+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34578899999999999998888754
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.72 E-value=6.8 Score=34.88 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=39.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhH
Q 040319 105 ILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEK 184 (812)
Q Consensus 105 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 184 (812)
++..+...+........++.+.+.+ ..++...+.++..|++.. .......++. ..+......+++.+-+.+.+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 3444444444444555555554444 244455556666665543 2333333331 2233334445555555556666
Q ss_pred HHHHHHHh
Q 040319 185 AFELFRDM 192 (812)
Q Consensus 185 A~~l~~~m 192 (812)
+.-++..+
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 66666555
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.57 E-value=10 Score=36.51 Aligned_cols=190 Identities=14% Similarity=0.036 Sum_probs=121.8
Q ss_pred HHhcCccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CCh-hHHHHHHH-HHHhcCCh
Q 040319 446 GVCGTLGFHEMGKQIHSYALKT-GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDI-VSWNGLIA-GHLLHRQG 520 (812)
Q Consensus 446 ~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~-~~~~~li~-~~~~~g~~ 520 (812)
..+...+....+.......... ........+..+...+...++...+...+..... ++. ..+..... .+...|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (291)
T COG0457 67 LALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDY 146 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCH
Confidence 3333444444444443333321 2233444555566666667777777777776554 222 22333333 67888999
Q ss_pred HHHHHHHHHHHHCCCCC----CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHH
Q 040319 521 DEALAVWSSMEKASIKP----DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEE 595 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~p----d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~ 595 (812)
+.|...|++... ..| ....+......+.. .+..+++...+...... ... ....+..+...+...|.+++
T Consensus 147 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 147 EEALELYEKALE--LDPELNELAEALLALGALLEA--LGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHH--hcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHH
Confidence 999999999866 444 22333333333445 77889999988888752 222 36778888888888999999
Q ss_pred HHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 596 AEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 596 A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
|...+.... ..|+ ...+..+...+...++.+.+.....+.++..|.
T Consensus 221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999888765 4554 455666666666777899999999999999886
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.52 E-value=0.66 Score=46.72 Aligned_cols=162 Identities=9% Similarity=-0.005 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCcc--C--Ccch
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEK-ASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIE--P--TSEH 579 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~ 579 (812)
+|-.+..++-+.-++.+++.+-+.-.. .|..|.. --+..+.-+-++...+.++++.+.|+...+-..-. | ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555554443332 1233311 11222222222322566777777777665411111 1 2456
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-------CCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHcc--CCCCC--
Q 040319 580 YASLVSVLGYWGFLEEAEETINNM-------PFQPKVSVW-----RALLDSCRIRLNTTIGKRVAKHILAM--EPQDP-- 643 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m-------~~~p~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~-- 643 (812)
|..|..+|++..++++|.-+..+. .++.-..-| ..+.-+++..|.+..|.+..+++.++ ...|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777777777777777665544332 222211222 22334677777777777776666543 22222
Q ss_pred --chHHHHHhhhhhCCCcchHHHHHH
Q 040319 644 --ATYILVSNLYSSSGRWHNSELVRE 667 (812)
Q Consensus 644 --~~~~~l~~~y~~~g~~~~a~~~~~ 667 (812)
.....+++||...|+.|.|..-++
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 234467788888887776654433
No 249
>PRK09687 putative lyase; Provisional
Probab=92.32 E-value=14 Score=37.44 Aligned_cols=76 Identities=7% Similarity=-0.077 Sum_probs=46.3
Q ss_pred CCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040319 470 SSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAY 549 (812)
Q Consensus 470 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 549 (812)
.++..+-..-+.++++.|+.+..-.+.+.+..+++ .-..+.++...|.. +|+..+.++.. -.||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 34555666667777777775443444444444442 33566777777775 68888888876 455666555555555
Q ss_pred c
Q 040319 550 R 550 (812)
Q Consensus 550 ~ 550 (812)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.20 E-value=0.54 Score=45.97 Aligned_cols=89 Identities=15% Similarity=0.242 Sum_probs=59.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHH
Q 040319 580 YASLVSVLGYWGFLEEAEETINNM----P---FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILV 649 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 649 (812)
|+.-+++| ..|++.+|.+.|... | ..||+.-| |..++...|+++.|...+..+.+-.|+. |..+.-|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44333332 345566665555442 2 44566555 6777778888888888888877766553 4567788
Q ss_pred HhhhhhCCCcchHHHHHHHHHh
Q 040319 650 SNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.+..+.|+.++|..++++..+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 8888888888888888887744
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.00 E-value=1.7 Score=38.27 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=48.5
Q ss_pred HhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch---HHHHHhhhhhC
Q 040319 587 LGYWGFLEEAEETINNMP----FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT---YILVSNLYSSS 656 (812)
Q Consensus 587 l~~~g~~~~A~~~~~~m~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~ 656 (812)
..+.|++++|.+.|+.+. ..| ....-..|+.++.+.++++.|...+++.+++.|.++.+ +...+-.+...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 345677777777776653 333 34556668888999999999999999999999987653 33344344443
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.53 E-value=1.9 Score=46.69 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040319 542 FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRI 621 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 621 (812)
...++.-+.+ .|..+.|+++-+.-.. -.++..+.|+++.|.++.++.. +...|..|...+..
T Consensus 298 ~~~i~~fL~~--~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEK--KGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHH
Confidence 3444444444 6666666655332211 2345566777777777766643 66688888888888
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 622 RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 622 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
+||++.|+.+++++ .-+..|.-+|...|+-+.-.++-+....+|
T Consensus 360 ~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 360 QGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp TTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888888877763 346667777888887766666665554443
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=3.5 Score=40.92 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=78.6
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRAL---LDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~l---l~~~~~~~~~~~a~~ 630 (812)
.|+..++...|+...... .-+.+.--.|+.+|...|+.++|..++..+|.+-...-|..+ +.......+.... .
T Consensus 147 ~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~-~ 223 (304)
T COG3118 147 AEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI-Q 223 (304)
T ss_pred ccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH-H
Confidence 688888888888776521 223566778889999999999999999999844333333331 2222222222211 1
Q ss_pred HHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 631 VAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.+++-+.-+|+|...-..|+..|...|+.++|.+.+-.+.
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2445556799999999999999999999999988766653
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.37 E-value=10 Score=41.21 Aligned_cols=155 Identities=20% Similarity=0.106 Sum_probs=93.9
Q ss_pred HHhcCChhHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHH
Q 040319 74 LAKLGREEEAIELFF-RMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLD 152 (812)
Q Consensus 74 ~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 152 (812)
..-+++++++.++.. .-.-..+ +......+++-+-+.|-.+.|.++-.. + ..-.....++| +++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg-~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLG-NLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT--HH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcC-CHH
Confidence 345677777665554 1111111 244466677777777777777664322 1 12234455677 999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 040319 153 YLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIG 232 (812)
Q Consensus 153 ~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 232 (812)
.|.++.++.. +...|..|-....++|+++-|.+.|... .. |..|+-.+...|+.+.-.++.......|
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKA-KD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHC-T----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhh-cC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999887766 5669999999999999999999999887 32 5666666777788877777777766655
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 040319 233 LGANLSVNNALIGFYTKCGRVKDVVALLE 261 (812)
Q Consensus 233 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 261 (812)
- +|....++.-.|++++..++|.
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHH
Confidence 2 3444445555677777666443
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.37 E-value=6.8 Score=43.14 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=69.3
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHH-HHHHhhcCChHHHHHHHHhCC-----C-CCCHHHHHHHHHHHHhcCCHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASL-VSVLGYWGFLEEAEETINNMP-----F-QPKVSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l-i~~l~~~g~~~~A~~~~~~m~-----~-~p~~~~~~~ll~~~~~~~~~~ 626 (812)
....+.|.++++.+.+.| |+...|.-. ...+...|++++|++.+++.. . +-....+--+...+....+.+
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 345555666666665533 444333322 244455666666666666532 0 112334445556677788888
Q ss_pred HHHHHHHHHHccCCCCCc-hHHHHHhhhhhCCCc-------chHHHHHHHHHh
Q 040319 627 IGKRVAKHILAMEPQDPA-TYILVSNLYSSSGRW-------HNSELVREDMRE 671 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~-------~~a~~~~~~m~~ 671 (812)
+|...+.++.+...-... ++...+-+|...|+. ++|.+++.+.+.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888887655333 345567778888888 777777777644
No 256
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.33 E-value=3.3 Score=42.17 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=56.7
Q ss_pred HHHHHHHHccCCC-------CChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCc
Q 040319 489 MSNAIKAFNKMPS-------HDIVSWNGLIAGHLLHRQ----GDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLN 555 (812)
Q Consensus 489 ~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g 555 (812)
...|..+|+.|.+ ++-..+.+|+.. ..++ .+.+...|+.+...|+..+. .....+|..+......
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3445556666554 333444444433 2222 25677888888888887765 3334444433321122
Q ss_pred hHHHHHHHHHHhhhhcCccCCcchHHHHHHH
Q 040319 556 LVDSCRKLFLSMKTIYNIEPTSEHYASLVSV 586 (812)
Q Consensus 556 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 586 (812)
.+..+.++++.+++ .|+++...+|..+.-+
T Consensus 197 ~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 197 KVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 35678888888887 6899998888876543
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.31 E-value=19 Score=42.79 Aligned_cols=161 Identities=17% Similarity=0.131 Sum_probs=87.8
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHH
Q 040319 282 GYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVM 361 (812)
Q Consensus 282 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 361 (812)
+++++|+.-+.++. ...|.-.+.---+.|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 56667776666664 335556666667778888888776 46777766666554321 11
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhh-
Q 040319 362 KFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIA- 440 (812)
Q Consensus 362 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t- 440 (812)
+. ..++--.-+|.++|+.++|.+.++. +|++.+|+.+-.++.. .-|...
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~~~--------------------~~dWr~~l~~a~ql~~----~~de~~~ 1000 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAYKE--------------------CGDWREALSLAAQLSE----GKDELVI 1000 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHHHH--------------------hccHHHHHHHHHhhcC----CHHHHHH
Confidence 11 1112223457777777777666543 4566677766665543 112111
Q ss_pred -HHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCC
Q 040319 441 -LTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD 503 (812)
Q Consensus 441 -~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~ 503 (812)
-..|..-+...+.+-+|-++...... . ..--+..|++...+++|.++-......|
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 12344444444544444444333221 1 1233566777788888887766555433
No 258
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.26 E-value=7 Score=37.57 Aligned_cols=87 Identities=11% Similarity=0.049 Sum_probs=47.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHcc----CCCCCchH
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-------FQPKV-SVWRALLDSCRIRLNTTIGKRVAKHILAM----EPQDPATY 646 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~ 646 (812)
.|.....+|.|..+++||-..+.+-. .-|+. ..+-+.+-.+....|+..|++.++...++ .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445556667777777665554432 12222 12333444445556777777777765553 35555555
Q ss_pred HHHHhhhhhCCCcchHHHHH
Q 040319 647 ILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 647 ~~l~~~y~~~g~~~~a~~~~ 666 (812)
..|...| ..|+.|++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 5565555 346666555543
No 259
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.07 E-value=10 Score=34.62 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=88.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchH-HHHHHHHHhhhcCCCHHHHHHHHhcCC
Q 040319 84 IELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVF-VTNALMGLYGKFSFCLDYLLKLFDELP 162 (812)
Q Consensus 84 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~~a~~~f~~~~ 162 (812)
+++.+.+.+.+++|+...+..+++.+.+.|.... +.+++..++-+|.. +...|++.-.+.......+..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4566777788999999999999999999988654 44555666655544 444444433322112344455555544
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 040319 163 HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRI 231 (812)
Q Consensus 163 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 231 (812)
..+..++..+...|++-+|+++.+.. .. -+......++.+..+.+|...-..++......
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~-~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQY-HK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHc-CC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667888999999999999999875 22 23333456677777777666655666655543
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.83 E-value=5.6 Score=43.79 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHH-HHHHHHhhhcCCHHHHHHHHccCCC-----C--ChhHHHHHHHHHHhcCChHHH
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVA-NSMVSMYFKCCNMSNAIKAFNKMPS-----H--DIVSWNGLIAGHLLHRQGDEA 523 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~k~g~~~~A~~~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~A 523 (812)
...+.+.+++..+.+.- |+...+ ---..++...|++++|.+.|++... | ....+--+...+...+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 35566666666665532 332222 2234556667777777777775432 1 112233344456667777777
Q ss_pred HHHHHHHHH
Q 040319 524 LAVWSSMEK 532 (812)
Q Consensus 524 ~~l~~~m~~ 532 (812)
.+.|.++.+
T Consensus 325 ~~~f~~L~~ 333 (468)
T PF10300_consen 325 AEYFLRLLK 333 (468)
T ss_pred HHHHHHHHh
Confidence 777777776
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.70 E-value=5.2 Score=40.15 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHH
Q 040319 486 CCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSC 560 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a 560 (812)
.|+..+|...++++.+ .|..+|+--=.+|..+|+...-...+++..-. ..||. .+|..=+-+++-...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444444444444443 34555555555555566555555555555432 23333 222222222222225555555
Q ss_pred HHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhC
Q 040319 561 RKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNM 603 (812)
Q Consensus 561 ~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m 603 (812)
.+.-++..+ +.| |.-.-.+....+.-.|+..|+.+++.+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555544433 222 1222233444455555566665555543
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.70 E-value=0.8 Score=31.14 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITF 542 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 542 (812)
..|..+...|...|++++|+++|++.++ ..||....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a 37 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHH
Confidence 3577888899999999999999999998 77887543
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=16 Score=36.52 Aligned_cols=153 Identities=11% Similarity=0.081 Sum_probs=95.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhc
Q 040319 512 AGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYW 590 (812)
Q Consensus 512 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 590 (812)
......|++.+|..+|+.... ..|+. ..-..+..++.. .|+++.|..++..+..+.. .........-+..+.++
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~--~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLA--AGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHH--cCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHH
Confidence 345667888888888888877 44544 344445556666 8888888888887754211 01111133456677777
Q ss_pred CChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCCchHHHHHhhhhhCCCcc-hHHHHH
Q 040319 591 GFLEEAEETINNMPFQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME--PQDPATYILVSNLYSSSGRWH-NSELVR 666 (812)
Q Consensus 591 g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~-~a~~~~ 666 (812)
....+..++.++.--.| |...-..|...+...|+.+.|...+=.++..+ -+|...-..|..++...|.-+ -+.+.|
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 77776666666665566 55555566667777888887766554444432 345667777777777777444 344555
Q ss_pred HHH
Q 040319 667 EDM 669 (812)
Q Consensus 667 ~~m 669 (812)
++|
T Consensus 297 RkL 299 (304)
T COG3118 297 RKL 299 (304)
T ss_pred HHH
Confidence 554
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.02 E-value=1 Score=41.46 Aligned_cols=89 Identities=9% Similarity=0.002 Sum_probs=68.4
Q ss_pred HHHhhcCChHHHHHHHHhCC-C-CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCC
Q 040319 585 SVLGYWGFLEEAEETINNMP-F-QP-----KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG 657 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~-~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 657 (812)
+-+...|.+++|..-|.... + +| ..+.|..-..+..+.+..+.|....-+++++.|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34556778888877776643 2 22 23444444556667889999999999999999998888888999999999
Q ss_pred CcchHHHHHHHHHhCC
Q 040319 658 RWHNSELVREDMREKG 673 (812)
Q Consensus 658 ~~~~a~~~~~~m~~~g 673 (812)
++++|.+-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999987643
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=3.5 Score=41.33 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=100.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH----HHHHhhcC
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL----VSVLGYWG 591 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l----i~~l~~~g 591 (812)
-+|+..+|-..++++++. .+.|...+...-.+|.. .|..+.-...++.+.. ...|+...|+.+ .-++..+|
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy--~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFY--NGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHh--ccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 367777777788888773 44455777777778877 8887777777777764 234565555443 33445678
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CCchHHHHHhhhhhCCCcchHHHH
Q 040319 592 FLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ----DPATYILVSNLYSSSGRWHNSELV 665 (812)
Q Consensus 592 ~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~ 665 (812)
-+++|++.-++.. +.| |.-.-.++.......|+..+|.+.+++--..-.+ -...|-..+-.|...+.++.|.++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 8888888777754 444 4545555555666777777777776654322111 123455566667777788888888
Q ss_pred HHHHHhCCCCCCCc
Q 040319 666 REDMREKGFRKHPS 679 (812)
Q Consensus 666 ~~~m~~~g~~~~~~ 679 (812)
++.=--+.+.|+.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 77654444555544
No 266
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=42 Score=38.17 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC-CCcccHHHHHHHHHh
Q 040319 237 LSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE-KNSVSYNALLAGYCK 311 (812)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~ 311 (812)
..++..+|+.+.-.|++++|-...-.|...+..-|..-+.-+...++......+.-.-+. -+...|..++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 456677788888888888888887777777777777777777776666553333222221 234456666666655
No 267
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.63 E-value=2.1 Score=37.75 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=49.8
Q ss_pred HhhhcCCHHHHHHHHccCCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcC
Q 040319 482 MYFKCCNMSNAIKAFNKMPS--H----DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRY 551 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 551 (812)
...+.|++++|.+.|+.+.. | ....--.|+.+|.+.|++++|...+++.++ +.|++ +-|...+.++++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHH
Confidence 34567888888888888765 1 123445578888999999999999999999 77765 556666666544
No 268
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.59 E-value=37 Score=37.41 Aligned_cols=180 Identities=12% Similarity=0.048 Sum_probs=117.1
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD---IVSWNGLIAGHLLHRQGDEALAVWSSMEKASI--KPDAITFVLII 546 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll 546 (812)
+..+|..-++.-.+.|+.+.+.-+|+...-|= ...|--.+.-....|+.+-|..++....+--. .|....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 56677777777888888888888888776521 23344444333444777777776666555222 23333333333
Q ss_pred HHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHH---HHHHhCC-CCCCHHHHHHHHH----
Q 040319 547 SAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAE---ETINNMP-FQPKVSVWRALLD---- 617 (812)
Q Consensus 547 ~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~---~~~~~m~-~~p~~~~~~~ll~---- 617 (812)
+-. .|+.+.|..+++.+.+++ |. ...----+...-|.|..+.+. +++.... .+-+..+...+.-
T Consensus 376 --~e~--~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 376 --EES--NGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFAR 448 (577)
T ss_pred --HHh--hccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHH
Confidence 334 889999999999998754 55 333334456677888888887 5555432 2223223322222
Q ss_pred -HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 618 -SCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 618 -~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
.+...++.+.|..++.++.+..|++...|..++++....+-
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 24567899999999999999999999999999988776663
No 269
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.45 E-value=8.3 Score=36.34 Aligned_cols=175 Identities=13% Similarity=0.040 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHH
Q 040319 486 CCNMSNAIKAFNKMPS--HD-IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
.|-+.-|+--|..... |+ +..||-|.--+...|+++.|.+.|+...+ +.|.. .++..-.-++-. .|+++-|.
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY--~gR~~LAq 153 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYY--GGRYKLAQ 153 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeee--cCchHhhH
Confidence 3444444444443322 33 35677777777778888888888888777 55543 333222223344 67777777
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETI-NNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
+-|...-.+..-.|=...|--++ -+.=+..+|..-+ ++.. .-|.--|+..|-.+....--+ +..++++.+-..
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~ 227 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADAT 227 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhcc
Confidence 66555433222222222222222 2333455555333 3322 344445655554433211111 112222222211
Q ss_pred CC-------CchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 641 QD-------PATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 641 ~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
++ +.+|..|+.-|-..|..++|..+++...
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11 4579999999999999999999999864
No 270
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.43 E-value=0.11 Score=46.74 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=59.0
Q ss_pred HHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChh
Q 040319 340 VVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPE 419 (812)
Q Consensus 340 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~ 419 (812)
++..+.+.+.+.....+++.+.+.+...+..+.+.|+..|++.+..+...++++... ..-...++..+.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-----~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-----NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-----SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-----ccCHHHHHHHHHhcchHH
Confidence 455566666777777777777776666778888899999999888788888876433 244455666677777777
Q ss_pred hHHHHHHHhcc
Q 040319 420 HAILLFHQSQS 430 (812)
Q Consensus 420 ~A~~~~~~m~~ 430 (812)
+|.-++.++..
T Consensus 88 ~a~~Ly~~~~~ 98 (143)
T PF00637_consen 88 EAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHccc
Confidence 77777766543
No 271
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.38 E-value=1.5 Score=43.85 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=54.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcC
Q 040319 513 GHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWG 591 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g 591 (812)
-|.+.|.+++|+..|.+-+. +.| |.+++..-..||.+ ...+..|..-.+.... .-...+.+|.|.|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk--~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLK--QKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHH--HHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 45555666666666665555 555 55666555555555 4444444333332221 0112334444444
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 592 FLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 592 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
.-.+ ..|+.++|.+-++.+++++|++.. |-..|++.....|+
T Consensus 173 ~AR~-------------------------~Lg~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 173 QARE-------------------------SLGNNMEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred HHHH-------------------------HHhhHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 3222 335666777778888888887433 33344444444433
No 272
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.19 E-value=2.2 Score=41.89 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHH
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYA 581 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 581 (812)
|+.-+.. .+.|++.+|...|...++. -|+. ..+--|..++.. .|++++|..+|..+.++++-.|. ++.+-
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~--qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYA--QGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHh--cccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 5544433 3466688888888887773 3332 223345555555 77888888888777776665555 35666
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
-+...+.+.|+-++|-..+++..
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 66666666666666665555543
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.01 E-value=0.9 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4688888899999999999999999988 6775
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.68 E-value=0.71 Score=29.10 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666677777888888888888888888774
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.24 E-value=14 Score=33.88 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 040319 274 IIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLL 326 (812)
Q Consensus 274 li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 326 (812)
++..+...|++-+|++..++...-+.+....++.+-.+.++...-..+|+-..
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555556655544444445555555555555444444444333
No 276
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.94 E-value=2.1 Score=36.57 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=43.5
Q ss_pred CchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCCHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP--FQPK----VSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~----~~~~~~ll~~~~~~~~~~ 626 (812)
.|+++.|++.|.+... +-| ....||.-..++--+|+.++|++=+++.. ..|. -..+..-...|+..|+.+
T Consensus 56 ~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 56 AGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred ccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 4555555555554443 222 24455555555555555555555544432 1111 112222233467788888
Q ss_pred HHHHHHHHHHccCCC
Q 040319 627 IGKRVAKHILAMEPQ 641 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~ 641 (812)
.|+.-++.+-++...
T Consensus 133 ~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 133 AARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhHHHHHHhCCH
Confidence 888777777666543
No 277
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.89 E-value=1.2 Score=39.85 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=57.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhH
Q 040319 207 TLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDL 286 (812)
Q Consensus 207 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~ 286 (812)
.++..+.+.+.+.....+++.+.+.+...+..+.+.|+..|++.++.+...++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666667777777788888888777677788889999999999888888887774433 333444555555555555
Q ss_pred HHHHhccCC
Q 040319 287 AVEIFDKMP 295 (812)
Q Consensus 287 A~~~f~~m~ 295 (812)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 555555443
No 278
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.87 E-value=25 Score=36.93 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeH-----HHHHHHHH---cCChhhHHHHHHHhcccCCCCCChhhHHHHH
Q 040319 374 ALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWT-----SMICGYAR---SGKPEHAILLFHQSQSEATVVPDEIALTSVL 445 (812)
Q Consensus 374 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~-----~li~~~~~---~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll 445 (812)
.|+-.|-...+++...++.+.+...+...+.-+ ...-++.+ .|+.++|++++..+.. ..-.++.-|+..+-
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHH
Confidence 444457777777777777777762221111111 12234445 6788888888877544 33445555555444
Q ss_pred H
Q 040319 446 G 446 (812)
Q Consensus 446 ~ 446 (812)
.
T Consensus 225 R 225 (374)
T PF13281_consen 225 R 225 (374)
T ss_pred H
Confidence 3
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.83 E-value=2.7 Score=41.86 Aligned_cols=76 Identities=13% Similarity=0.244 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEK-----ASIKPDAITFVL 544 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ 544 (812)
..++..++..+..+|+.+.+...++++.. -|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34667789999999999999999887765 5678999999999999999999999998876 577777666555
Q ss_pred HHHH
Q 040319 545 IISA 548 (812)
Q Consensus 545 ll~a 548 (812)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.73 E-value=1.2 Score=28.67 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 281
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.68 E-value=25 Score=34.42 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHY 580 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 580 (812)
..|-.=+..-.+.|++++|.+.|+.+.. -.|.. .+-..++-|.-+ .+++++|...+++..+.++-.|+++ |
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~--~~p~s~~~~qa~l~l~yA~Yk--~~~y~~A~~~~drFi~lyP~~~n~d-Y 109 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDS--RHPFSPYSEQAQLDLAYAYYK--NGEYDLALAYIDRFIRLYPTHPNAD-Y 109 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCcccHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhCCCCCChh-H
Confidence 3444444555677888888888888876 33432 333334444444 7778888877777776565555543 3
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------------
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD----------------- 642 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----------------- 642 (812)
...+.++..-- ..+ ...|. .-...|...++.+++--|+.
T Consensus 110 ~~YlkgLs~~~----------~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L 166 (254)
T COG4105 110 AYYLKGLSYFF----------QIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL 166 (254)
T ss_pred HHHHHHHHHhc----------cCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH
Confidence 33333333111 110 00010 01122333334444444432
Q ss_pred CchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 643 PATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 643 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
++.-...++.|.+.|.|..|..-++.|.+.
T Consensus 167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 167 AGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 233456788999999999999999988654
No 282
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.62 E-value=2 Score=30.59 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=26.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
+.-++.+.|+.+.|.+..+.+++++|+|..+-.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4457889999999999999999999997765444
No 283
>PRK15331 chaperone protein SicA; Provisional
Probab=87.33 E-value=8 Score=35.03 Aligned_cols=85 Identities=8% Similarity=-0.097 Sum_probs=41.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCCh
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFL 593 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~ 593 (812)
+-+.|++++|..+|+-+.. ..|...-|..-|.+|.+. .+.+++|...|..... .. .-|+..+-.+..++...|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCH
Confidence 3455666666666666555 444444444444443331 4556666665554332 11 11222233344555555666
Q ss_pred HHHHHHHHhC
Q 040319 594 EEAEETINNM 603 (812)
Q Consensus 594 ~~A~~~~~~m 603 (812)
+.|..-|+..
T Consensus 122 ~~A~~~f~~a 131 (165)
T PRK15331 122 AKARQCFELV 131 (165)
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.17 E-value=0.91 Score=45.31 Aligned_cols=85 Identities=12% Similarity=-0.010 Sum_probs=70.3
Q ss_pred HHHhhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 585 SVLGYWGFLEEAEETINN-MPFQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
+-|.+.|.++||++.+.+ |...| |++++..-..+|.+.+.+..|+.-.+.++.++.....+|..-+..-...|+..||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456788999999999887 55777 8888888889999999999999999999999887777888877777888888888
Q ss_pred HHHHHHH
Q 040319 663 ELVREDM 669 (812)
Q Consensus 663 ~~~~~~m 669 (812)
.+-.+..
T Consensus 185 KkD~E~v 191 (536)
T KOG4648|consen 185 KKDCETV 191 (536)
T ss_pred HHhHHHH
Confidence 7655443
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.13 E-value=16 Score=33.05 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
.++.+++..++..+.- +.|. .++-..-+-.+.+.|++.+|+.+++++. -.|....-.+|+..|.....-..=...
T Consensus 23 ~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~ 99 (160)
T PF09613_consen 23 LGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRY 99 (160)
T ss_pred cCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHH
Confidence 4566666666666654 4454 2222333445567777777777777765 344555556677766654333333444
Q ss_pred HHHHHccCCC
Q 040319 632 AKHILAMEPQ 641 (812)
Q Consensus 632 ~~~~~~~~p~ 641 (812)
++++++-.|+
T Consensus 100 A~evle~~~d 109 (160)
T PF09613_consen 100 ADEVLESGAD 109 (160)
T ss_pred HHHHHhcCCC
Confidence 5566666553
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.67 E-value=1.3 Score=28.53 Aligned_cols=25 Identities=12% Similarity=-0.059 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 040319 612 WRALLDSCRIRLNTTIGKRVAKHIL 636 (812)
Q Consensus 612 ~~~ll~~~~~~~~~~~a~~~~~~~~ 636 (812)
|..|...|...|+.++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555533
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.40 E-value=7.9 Score=35.10 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=37.9
Q ss_pred HHhhCChhHHHHHhccCCCCCcccHHHHH-----HHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 040319 278 YMEFGYVDLAVEIFDKMPEKNSVSYNALL-----AGYCKNGKAMEALGLFVKLLEEGLVLTE 334 (812)
Q Consensus 278 ~~~~g~~~~A~~~f~~m~~~d~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 334 (812)
+.+.+..++|+.-|..+.+.+--+|-.|. ....+.|+...|...|.+.-.....|-.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~ 129 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI 129 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch
Confidence 34556667777777777776666665543 3456778888888888887765544543
No 288
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.15 E-value=12 Score=38.18 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=82.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHhcCCCCchHHHHHHHHHHhh---hhcCccCCcchH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKP-D----AITFVLIISAYRYTNLNLVDSCRKLFLSMK---TIYNIEPTSEHY 580 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d----~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~y 580 (812)
+|..++.-.+.++++++.|+...+---.. | -..+..|-+-|.. ..++++|.-+..... ..+++.....-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~--l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ--LKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH--HHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 35566666777888888888876521111 1 2456777777777 778888776654332 224444333344
Q ss_pred HHH-----HHHHhhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 581 ASL-----VSVLGYWGFLEEAEETINNMP-------FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 581 ~~l-----i~~l~~~g~~~~A~~~~~~m~-------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
.+| .-+|-..|++-+|.+.-++.. -.| -+.....+.+.|+..|+.|.|..-+|++....
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 443 455667777777777666532 222 34566677888999999999999888887643
No 289
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.06 E-value=1.9 Score=27.00 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 567778888889999999999998888 6665
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.03 E-value=2.7 Score=37.76 Aligned_cols=54 Identities=11% Similarity=0.189 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
..+++.+.++.++.-+.-+.|..+..-..-++++...|+|++|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345677777777777777777777777777777777777777777777765543
No 291
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.23 E-value=66 Score=34.77 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHhhcCCCCCCcEEEEccccccc--chhhHHHHh
Q 040319 742 FYHSAKLAATYGLLTTPAGQPVRIVKNILTCG--DCHSFLKYV 782 (812)
Q Consensus 742 ~~hse~la~~~~~~~~~~~~~~~~~~n~~~c~--~ch~~~k~~ 782 (812)
+-|-|+||.-|+.-..- -..|.|..|.---. |-|+..|-+
T Consensus 429 ~sl~ekl~~kfk~sknf-~kr~kI~~~y~~vr~~Dlhse~em~ 470 (711)
T COG1747 429 VSLEEKLAVKFKASKNF-FKRIKILNTYMFVRDTDLHSELEMF 470 (711)
T ss_pred cChHHHHHHHhhcchhh-HHHHHHHHHHHhhhcccchhHHHHH
Confidence 45778888877653221 12233333322222 666655544
No 292
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.84 E-value=37 Score=33.95 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=59.3
Q ss_pred CHHHHHHHHhcCCC-----CCcchHHHHHHHHHc-CC-ChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHH
Q 040319 150 CLDYLLKLFDELPH-----KDTVSWNTVISSVVN-EF-EYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGR 222 (812)
Q Consensus 150 ~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~-~g-~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 222 (812)
.+-+|.++|+.... .|...-..+++.... .+ ....--++.+-+....+-.++..+...+|..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 45566666663221 244444444444443 11 122222333333233345566666666666666666666666
Q ss_pred HHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 040319 223 AVHAHAIRI-GLGANLSVNNALIGFYTKCGRVKDVVALLE 261 (812)
Q Consensus 223 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 261 (812)
+++...... +...|...|..+|....+.|+..-...+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666665554 455566666666666666666666555443
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.75 E-value=53 Score=33.32 Aligned_cols=62 Identities=6% Similarity=0.038 Sum_probs=31.6
Q ss_pred HHHHHhhhcCCHHHHHHHHccCCC-C--ChhHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCH
Q 040319 478 SMVSMYFKCCNMSNAIKAFNKMPS-H--DIVSWNGLIAGHLL--HRQGDEALAVWSSMEKASIKPDA 539 (812)
Q Consensus 478 ~Li~~y~k~g~~~~A~~~f~~~~~-~--~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~ 539 (812)
.-++...+.++.+.+.+++.+|.. . ....+..++..+.. ......|...+++++...+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 334444456666666666665543 1 22444444444421 22345666666666655555554
No 294
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.68 E-value=36 Score=33.91 Aligned_cols=55 Identities=9% Similarity=-0.015 Sum_probs=49.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 617 DSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 617 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..|...|.+..|.+..++++.++|-+...+..|.++|+..|+--.|.+-+++|.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4688899999999999999999999999999999999999998888887777743
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.28 E-value=3.4 Score=36.50 Aligned_cols=53 Identities=6% Similarity=0.102 Sum_probs=45.7
Q ss_pred hcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 621 IRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 621 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
..++.+.++.+.+.+--+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37888888888888888899999999999999999999999999998876554
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.07 E-value=7.1 Score=38.90 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=70.6
Q ss_pred hCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040319 467 TGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-------H--DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP 537 (812)
Q Consensus 467 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 537 (812)
.|......+...+++.-....+++++...+-++.. | ..++|-.++. .-++++++.++..=++-|+.|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34455555566677777777888888877766543 2 2334444433 347789999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 538 DAITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 538 d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
|..|++.+++.+.+ .+++.+|..+...|..
T Consensus 134 dqf~~c~l~D~flk--~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLK--KENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHh--cccHHHHHHHHHHHHH
Confidence 99999999999998 8999888887665543
No 297
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.83 E-value=50 Score=32.38 Aligned_cols=179 Identities=14% Similarity=0.104 Sum_probs=105.7
Q ss_pred CchhHHHHHHHHhhhcCCHHHHHHHHccCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHH
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD------IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITF 542 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~ 542 (812)
|-...|+--+ .-.+.|++++|.+.|+.+.... ..+--.++-++.+.+++++|+..+++.++ ..|++ +-|
T Consensus 33 p~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCChhH
Confidence 3334444433 3456799999999999997622 23344456677889999999999999988 44543 344
Q ss_pred HHHHHHhcC---C--CCchH---HHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH--
Q 040319 543 VLIISAYRY---T--NLNLV---DSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW-- 612 (812)
Q Consensus 543 ~~ll~a~~~---~--~~g~~---~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~-- 612 (812)
..-|.+.+. . ...+. .+|..-|+....++ |+ +.-..+|..-+.... |....
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~E 170 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHE 170 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHH
Confidence 444443332 1 01122 23333333333322 22 111222222221110 11001
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDP---ATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.++..-|.++|...-|..-++.+++--|+.+ ..+..|..+|.+.|-.++|.+..+-+..
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 1234457788888888888888888766544 3456677889999999999998887754
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.58 E-value=68 Score=33.71 Aligned_cols=141 Identities=11% Similarity=0.002 Sum_probs=79.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASI-----KPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP 575 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p 575 (812)
....+|..++..+.+.|+++.|...+.++...+. .|.. ..+.-++-+ .|+-.+|...++...+. .+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-----~g~~~~Ai~~L~~~~~~-~~~~ 217 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-----QGEQEEAIQKLRELLKC-RLSK 217 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-----cCCHHHHHHHHHHHHHH-Hhhh
Confidence 4556888999999999999999999999887431 3333 334444433 67788888888777651 1111
Q ss_pred C--cchHHHHHHHHhhcCChHHHHHHHHhC--C-CCC--CHHHHHHHHHHHHhc------CCHHHHHHHHHHHHccCCCC
Q 040319 576 T--SEHYASLVSVLGYWGFLEEAEETINNM--P-FQP--KVSVWRALLDSCRIR------LNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 576 ~--~~~y~~li~~l~~~g~~~~A~~~~~~m--~-~~p--~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~p~~ 642 (812)
. ......+...+.. ..+....- . ..+ -..++..+..-+... ++.+.+...++.+.++.|+.
T Consensus 218 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 218 NIDSISNAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred ccccccHHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 1 1111111111000 00000000 0 000 012222233333333 78888999999999999988
Q ss_pred CchHHHHHhhhh
Q 040319 643 PATYILVSNLYS 654 (812)
Q Consensus 643 ~~~~~~l~~~y~ 654 (812)
...+..++..+.
T Consensus 292 ~k~~~~~a~~~~ 303 (352)
T PF02259_consen 292 EKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHHH
Confidence 888887776654
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.47 E-value=39 Score=31.63 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH--HHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH-----HHHHhhcCChH
Q 040319 522 EALAVWSSMEKASIKPDAITFVLII--SAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL-----VSVLGYWGFLE 594 (812)
Q Consensus 522 ~A~~l~~~m~~~g~~pd~~t~~~ll--~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l-----i~~l~~~g~~~ 594 (812)
+.....+++....-+...-++.+|- .++.. .|++++|...++.... .|.-+.+..+ ...+...|.++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve--~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVE--ANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKAD 143 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHH
Confidence 4445555555432122222222222 24455 7888888888876654 2444444443 45677889999
Q ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 595 EAEETINNMPFQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 595 ~A~~~~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
+|+..++... .++ +.....-...+...|+-+.|+..++++++.+++
T Consensus 144 ~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 144 AALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 9999988754 221 122222334677889999999999999988765
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.66 E-value=5.7 Score=39.66 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...++.++...|+.+.+...++++++++|-+...|..+...|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555566666777777777777777777777777777777777777777777777654
No 301
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.30 E-value=22 Score=29.01 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHH
Q 040319 241 NALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALG 320 (812)
Q Consensus 241 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~ 320 (812)
|++.+.+...++.+++..+. -+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..
T Consensus 25 ~tIAdwL~~~~~~~E~v~lI-------------RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLI-------------RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHHhcCCchHHHHHHH-------------HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHH
Confidence 44455555555555555422 2346777888888888999999999999988765 35677777777
Q ss_pred HHHHHHHcCCCCCHhHHH
Q 040319 321 LFVKLLEEGLVLTEFTLT 338 (812)
Q Consensus 321 l~~~m~~~g~~p~~~t~~ 338 (812)
-+.+|-.+| .|...+|.
T Consensus 90 rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 777776665 44444444
No 302
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.05 E-value=67 Score=32.59 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhcCChHHHH---HHHhcCC--CCc-chhHHHHHHHHHhhCChhHHHHHhccCCCC---CcccHHHHHHH
Q 040319 238 SVNNALIGFYTKCGRVKDVV---ALLERMP--VMD-IITLTEIIIAYMEFGYVDLAVEIFDKMPEK---NSVSYNALLAG 308 (812)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~---~l~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~ 308 (812)
.+...|+.+|...+..+... ++++.+. -++ +..+-.-+..+.+.++.+++.+++.+|... ....+...+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34555666666666544333 3333331 112 233333444444455566666666665431 22345555444
Q ss_pred HHh--CCChHHHHHHHHHHHHcCCCCCH
Q 040319 309 YCK--NGKAMEALGLFVKLLEEGLVLTE 334 (812)
Q Consensus 309 ~~~--~g~~~~A~~l~~~m~~~g~~p~~ 334 (812)
+.+ ......|...+..++...+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 421 12334555555555554444444
No 303
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.03 E-value=1.3 Score=26.09 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=19.3
Q ss_pred chHHHHHhhhhhCCCcchHHHHHH
Q 040319 644 ATYILVSNLYSSSGRWHNSELVRE 667 (812)
Q Consensus 644 ~~~~~l~~~y~~~g~~~~a~~~~~ 667 (812)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778889999999999988764
No 304
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.92 E-value=9.5 Score=35.96 Aligned_cols=101 Identities=18% Similarity=0.132 Sum_probs=70.1
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|...-|+-=|.+... +.|+ +..||-+.--|..+|+++.|.+.|+..- +.|. ..+...-.-+..--|+.+.|.+
T Consensus 78 lGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 6667777766766654 6777 6788888888899999999999998854 5663 3333222223445688999999
Q ss_pred HHHHHHccCCCCCchHHHHHhhhhhCCCcc
Q 040319 631 VAKHILAMEPQDPATYILVSNLYSSSGRWH 660 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 660 (812)
-+-+..+-+|+||- .-.|+|...-+.+
T Consensus 155 d~~~fYQ~D~~DPf---R~LWLYl~E~k~d 181 (297)
T COG4785 155 DLLAFYQDDPNDPF---RSLWLYLNEQKLD 181 (297)
T ss_pred HHHHHHhcCCCChH---HHHHHHHHHhhCC
Confidence 88888899998763 2335555544443
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.86 E-value=1.2e+02 Score=35.21 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=54.0
Q ss_pred HHHHHHHccCChhhHHHHHhcCCCCChhhHHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 040319 38 PLISAYLKLGHVADAYKIFYGLSSPNVVSFTSL---ISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLE 114 (812)
Q Consensus 38 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 114 (812)
.-|++..+...++.|..+-..-..+....-+.+ .+-+.+.|++++|...|-+-... +.| ..+++-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 345555555566666666554332222211211 22334566777776665543321 111 223344433333
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCC
Q 040319 115 LELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELP 162 (812)
Q Consensus 115 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~ 162 (812)
+..--..++.+.+.|+.. ...-+.|+..|.+.+ +.+...+..+..+
T Consensus 413 IknLt~YLe~L~~~gla~-~dhttlLLncYiKlk-d~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLK-DVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHccccc-chhHHHHHHHHHHhc-chHHHHHHHhcCC
Confidence 444444455555555432 222345556666666 5555555544443
No 306
>PRK10941 hypothetical protein; Provisional
Probab=79.89 E-value=12 Score=37.57 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
..+.|-.++...++.+.|.++.+.++.+.|+++.-+.-.+-+|.+.|.+..|..-++..-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 345566778899999999999999999999999888889999999999999998777653
No 307
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=79.58 E-value=31 Score=35.21 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=48.6
Q ss_pred HHHHhccCCC-------CCcccHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCCCCHh--HHHHHHHHhccchh--hh
Q 040319 287 AVEIFDKMPE-------KNSVSYNALLAGYCKNGK----AMEALGLFVKLLEEGLVLTEF--TLTSVVNACGLIME--AK 351 (812)
Q Consensus 287 A~~~f~~m~~-------~d~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~--~~ 351 (812)
|..+|+.|.+ ++..++.+|+.. ..++ .+.+..+|+.+.+.|+..+.. ..+.+|..+..... ..
T Consensus 122 a~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~ 199 (297)
T PF13170_consen 122 AKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVA 199 (297)
T ss_pred HHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHH
Confidence 3446666654 344556666554 2222 356677888888888765443 33444444333322 34
Q ss_pred hHHHHHhhHHHhcCCCchhHHHH
Q 040319 352 LSEQIHGFVMKFGLGSNDCIEAA 374 (812)
Q Consensus 352 ~a~~i~~~~~~~g~~~~~~~~~~ 374 (812)
.+..++..+.+.|+++....|..
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHcCCccccccccH
Confidence 66677777777777665555443
No 308
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.55 E-value=2.9 Score=26.18 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
+|..+...|.+.|++++|++.|++..+ +.||
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 567777888888888888888888877 5553
No 309
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=79.37 E-value=41 Score=29.18 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 040319 169 WNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGL 233 (812)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 233 (812)
.+..+..++++|.-+.-.+++.++ .. .-+|++.....+..||.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l-~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNEL-KK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH-hh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344456666667666666666665 22 2345555666666667777777777666666666654
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.34 E-value=29 Score=32.33 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 66 SFTSLISGLAKLGREEEAIELFFRMRSEGIVPN--EHSFVAILTACIRLLELELGFQIHALIVK 127 (812)
Q Consensus 66 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 127 (812)
.+..+..-|.+.|+.++|++.|.+++.....|. ...+..+|+.+.-.+++..+......+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566778888888888888888888887654444 34567778888888888877766655544
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.90 E-value=27 Score=32.57 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPSHD------IVSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345567777777777777777777766522 23455566666666677666666665554
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.88 E-value=7.8 Score=36.36 Aligned_cols=70 Identities=10% Similarity=0.155 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CCchHHHHHhhhhhCCCcchHH
Q 040319 594 EEAEETINNMPFQP--KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ----DPATYILVSNLYSSSGRWHNSE 663 (812)
Q Consensus 594 ~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~ 663 (812)
++|...|-.+.-.| +.+..-..|..+....|.++++..+-+++++.+. |+..+..|+.+|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44555555554222 4445555666777789999999999999987533 5788999999999999998875
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.14 E-value=26 Score=38.49 Aligned_cols=148 Identities=16% Similarity=0.019 Sum_probs=100.4
Q ss_pred hcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHH
Q 040319 485 KCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKL 563 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~ 563 (812)
-.|+++.|..++-.++++ .-+.++.-+...|..++|++ +.||. .-|...+ + .|+++.|.++
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFelal----~--lgrl~iA~~l 659 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFELAL----K--LGRLDIAFDL 659 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhhhhh----h--cCcHHHHHHH
Confidence 357777777776666632 33445566667777777766 34444 2333333 3 7888888887
Q ss_pred HHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 564 FLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 564 ~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
..+.. +..-|..|.++...+|++..|.+-|.+.. -|.+|+-.+...|+.+.-..+....-+....
T Consensus 660 a~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-- 724 (794)
T KOG0276|consen 660 AVEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN-- 724 (794)
T ss_pred HHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhccc--
Confidence 65443 45679999999999999999999888743 3778888888888887655555555444333
Q ss_pred chHHHHHhhhhhCCCcchHHHHHHH
Q 040319 644 ATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 644 ~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
+.--..|...|+++++.++..+
T Consensus 725 ---N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 ---NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---chHHHHHHHcCCHHHHHHHHHh
Confidence 3334567888999999888755
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.87 E-value=5.4 Score=26.23 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887765
No 315
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.71 E-value=1.5e+02 Score=34.22 Aligned_cols=125 Identities=11% Similarity=0.082 Sum_probs=70.0
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCCh
Q 040319 517 HRQGDEALAVWSSMEKAS-IKPDAI--TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFL 593 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~ 593 (812)
..+.+.|..++.+..... ..++.. ....+...... .+...++...++..... ..+.....--+..-.+.+++
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~--~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMG--NDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDR 328 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCH
Confidence 445688888888775433 333332 22233222222 22255666666654321 12334444445555588899
Q ss_pred HHHHHHHHhCCC-CCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 594 EEAEETINNMPF-QPKVSVWRA-LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 594 ~~A~~~~~~m~~-~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
+.+...|..|+. ..+..-|.- +..+....|+.+.|...++++.. + ...|-.|+
T Consensus 329 ~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 329 RGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 999899999872 112222333 34455668999999999988744 2 24665554
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.41 E-value=19 Score=29.19 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH-HhCCCCchHHHHHHH
Q 040319 81 EEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIV-KMGCVDSVFVTNALM 141 (812)
Q Consensus 81 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li 141 (812)
-++.+-++.+....+.|++....+.|++|.+.+++..|.++++-+. +.|. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 3556667777778899999999999999999999999999999776 5553 233444443
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.37 E-value=16 Score=39.85 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=67.2
Q ss_pred HhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHH
Q 040319 380 TRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQ 459 (812)
Q Consensus 380 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 459 (812)
.+.|+++.|.++-.+.. +..-|..|-.+..+.+++..|.+.|...+. |.+|+-.+...|+.+.-..
T Consensus 648 l~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHH
Confidence 45677888877765544 377799999999999999999988877665 5566666666777665555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccC
Q 040319 460 IHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKM 499 (812)
Q Consensus 460 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 499 (812)
+-....+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 55555555532 22233566677777777766543
No 318
>PRK09687 putative lyase; Provisional
Probab=76.37 E-value=92 Score=31.59 Aligned_cols=93 Identities=13% Similarity=0.023 Sum_probs=41.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCC-hhHHHH-HhccCCCCCcccHHHHHHHHHh
Q 040319 234 GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGY-VDLAVE-IFDKMPEKNSVSYNALLAGYCK 311 (812)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~-~f~~m~~~d~~~~~~li~~~~~ 311 (812)
.++..+-...+.++.+.++.+....+...+..+|...-..-+.++.+.+. ...+.. +...+.++|...-...+.++.+
T Consensus 139 D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 139 DKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 33445555555555555554333333333344444444444444443321 112222 2333334555555555555555
Q ss_pred CCChHHHHHHHHHHHH
Q 040319 312 NGKAMEALGLFVKLLE 327 (812)
Q Consensus 312 ~g~~~~A~~l~~~m~~ 327 (812)
.|+ ..|+..+-+..+
T Consensus 219 ~~~-~~av~~Li~~L~ 233 (280)
T PRK09687 219 RKD-KRVLSVLIKELK 233 (280)
T ss_pred cCC-hhHHHHHHHHHc
Confidence 555 344444444444
No 319
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.67 E-value=18 Score=34.84 Aligned_cols=81 Identities=10% Similarity=0.031 Sum_probs=63.6
Q ss_pred CChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 591 GFLEEAEETINNM-PFQPKV-SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 591 g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
.++++|..-+.+. .+.|.. .-|..=+-.+.+..+.+.+..-..++++++|+.......|+..+.....+++|+.+..+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4556666655443 367765 44555555566788999999999999999999999999999999999999999999888
Q ss_pred HHh
Q 040319 669 MRE 671 (812)
Q Consensus 669 m~~ 671 (812)
...
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 743
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.51 E-value=54 Score=34.49 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ----DPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...+|..+...|+++|+++.|..++.++.+..+. .+.....-+.++...|+-++|....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999986522 466777889999999999999998877765
No 321
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.21 E-value=1.6e+02 Score=33.86 Aligned_cols=191 Identities=15% Similarity=0.119 Sum_probs=92.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCh--hhHHHHHHHHH-hcCChHHHHHHHHHHHHhCCCCch---
Q 040319 62 PNVVSFTSLISGLAKLGREEEAIELFFRMRS-EGIVPNE--HSFVAILTACI-RLLELELGFQIHALIVKMGCVDSV--- 134 (812)
Q Consensus 62 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~--- 134 (812)
.++..|..||. -|++.++...+ ..++|.. .++-.+...+. ...+++.|+..+...+..--.++.
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 34455666654 35555555553 2222222 22333333333 455666666666655433222211
Q ss_pred --HHHHHHHHHhhhcCCCHHHHHHHHhcCCC----CCcchHHH----H-HHHHHcCCChhHHHHHHHHhHhcCC--CCCC
Q 040319 135 --FVTNALMGLYGKFSFCLDYLLKLFDELPH----KDTVSWNT----V-ISSVVNEFEYEKAFELFRDMKRDNG--FTVD 201 (812)
Q Consensus 135 --~~~~~li~~y~~~g~~~~~a~~~f~~~~~----~~~~~~~~----l-i~~~~~~g~~~~A~~l~~~m~~~~g--~~pd 201 (812)
.....++..|.+.+ ... |.+..++..+ .....|.- + +..+...+++..|++.++....... ..|-
T Consensus 99 k~~~~~ll~~i~~~~~-~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTN-PKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHhcC-HHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 12233455555555 333 6666665432 11222222 2 2222233788888888887743332 2333
Q ss_pred cchHHHHHHHHh--cCCChHHHHHHHHHHHHhCC---------CCchhHHHHHHHHH--HhcCChHHHHHHHhcC
Q 040319 202 YFTISTLLTACT--GCFVLMEGRAVHAHAIRIGL---------GANLSVNNALIGFY--TKCGRVKDVVALLERM 263 (812)
Q Consensus 202 ~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~~~--~~~g~~~~A~~l~~~~ 263 (812)
...+..++.+.. ..+..+.+.+....+..... .|-..++..+++.+ ...|+++.+...++++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555543 34445556666665543222 33456666666544 4567766777665554
No 322
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.03 E-value=2.4 Score=26.88 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=11.9
Q ss_pred cchHHHHHHHHhhcCChHHHH
Q 040319 577 SEHYASLVSVLGYWGFLEEAE 597 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~ 597 (812)
...|..+..+|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 555555555555555555553
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.48 E-value=6.8 Score=23.25 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
+|..+...+...++.+.|...+++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555666677777777777777776664
No 324
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.27 E-value=89 Score=30.42 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=45.4
Q ss_pred HHHhhhcCCHHHHHHHHccCCC--------CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC-CHHHHHHHHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPS--------HDI-VSWNGLIAGHLLHRQGDEALAVWSSMEKAS--IKP-DAITFVLIIS 547 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p-d~~t~~~ll~ 547 (812)
...|.+..++++|-..|.+-.. ++. ..+-+.|-.|....++..|...+++--+.+ ..| |..+...||.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 3445555556655555443221 121 234445555666667777777777654432 122 3467777888
Q ss_pred HhcCCCCchHHHHHHHH
Q 040319 548 AYRYTNLNLVDSCRKLF 564 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~ 564 (812)
+|- .|+.++..+++
T Consensus 237 ayd---~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AYD---EGDIEEIKKVL 250 (308)
T ss_pred Hhc---cCCHHHHHHHH
Confidence 775 47777766654
No 325
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.23 E-value=3.1e+02 Score=36.18 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
..+|......++..|.++.|..+.-++.+..+ +..+...+..+-..|+-..|..+.++.-+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 56888888999999999999998877777664 689999999999999999999998887543
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.94 E-value=18 Score=29.32 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=37.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 600 INNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 600 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+-.+.+-|++.+..+-|.||++-+|+..|.+++|-+...-..+...|-.+
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 33455789999999999999999999999999997763332234445444
No 327
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.20 E-value=21 Score=29.31 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=35.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 597 EETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 597 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+.-+-.+.+-|++.+..+.|.||++.+|+..|.+++|-+...-.+....|-.+
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 33333455789999999999999999999999999998865444334355544
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.23 E-value=12 Score=34.48 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 625 TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
++.|..-++.++.++|+...++.++++.|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4566777888899999999999999999988875
No 329
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=70.04 E-value=2.1e+02 Score=32.92 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=43.1
Q ss_pred HHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhC-CCCchhHHHHHHHHhhh--
Q 040319 409 ICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTG-FSSDLGVANSMVSMYFK-- 485 (812)
Q Consensus 409 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~k-- 485 (812)
...+.-.|+++.|++.+.+. .+...|.+.+...+..+.-+.-.+... ..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 44566789999999998772 456677777777776654443322221 1111111 11122456677777775
Q ss_pred -cCCHHHHHHHHccCCC
Q 040319 486 -CCNMSNAIKAFNKMPS 501 (812)
Q Consensus 486 -~g~~~~A~~~f~~~~~ 501 (812)
..+..+|.++|--+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4677888888765543
No 330
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.03 E-value=1.2e+02 Score=29.50 Aligned_cols=99 Identities=11% Similarity=0.174 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHhhhhcCcc-CCcchHHHHH---HHHhhcCChHHHHHHHHhCC---CCCCHHHHHH---HHH--HHHhc
Q 040319 555 NLVDSCRKLFLSMKTIYNIE-PTSEHYASLV---SVLGYWGFLEEAEETINNMP---FQPKVSVWRA---LLD--SCRIR 622 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~-p~~~~y~~li---~~l~~~g~~~~A~~~~~~m~---~~p~~~~~~~---ll~--~~~~~ 622 (812)
.++++|+..|+..-+-+..+ .+...--|++ +.-+..|++.+|+++|++.. +..+..-|.. ++. .|...
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 45555555555554322211 1222223333 33356678899999988753 2222222322 222 24444
Q ss_pred -CCHHHHHHHHHHHHccCCCCC--chHHHHHhhh
Q 040319 623 -LNTTIGKRVAKHILAMEPQDP--ATYILVSNLY 653 (812)
Q Consensus 623 -~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y 653 (812)
.|.--+.+++++-.+++|.-+ .-+..|-.+.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 788888899999999999733 3344444443
No 331
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.67 E-value=32 Score=34.56 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=66.2
Q ss_pred ccCCCccchHHHHHHHHccCChhhHHHHHhcCCC-CC------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 040319 28 LLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS-PN------VVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEH 100 (812)
Q Consensus 28 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 100 (812)
|.+.+..+...++..-.....++++...+-++.. |+ ...+ +.++ ++-.-++++++.++..=..-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 4444555555666555556777777777766552 22 2221 2233 233446778888888777888888888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 040319 101 SFVAILTACIRLLELELGFQIHALIVKMG 129 (812)
Q Consensus 101 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 129 (812)
+++.+|..+.+.+++..|.++...|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888777776554
No 332
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.67 E-value=1.8e+02 Score=31.13 Aligned_cols=54 Identities=4% Similarity=-0.044 Sum_probs=31.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAI--TFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
...+++..|.++|+++... +.++.. .+..+..+|..=..-+.++|.+.|+....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3567777888888877775 444443 23333334332114556677777776654
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.61 E-value=28 Score=28.61 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHH
Q 040319 522 EALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVS 585 (812)
Q Consensus 522 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 585 (812)
+..+-+..+....+.|+.....+.|.||.+ .+++..|.++|+.++.+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRR--vND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRR--VNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 445556666667788999999999999998 9999999999998886543 33346776664
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.06 E-value=7.3 Score=23.94 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=18.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
.+...|.+.|++++|.+.|+++++ -.|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~--~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK--RYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH--HCcC
Confidence 345566667777777777777776 4454
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.02 E-value=1.3e+02 Score=29.53 Aligned_cols=237 Identities=13% Similarity=0.082 Sum_probs=139.0
Q ss_pred cCCHHHHHHHHhcCCCCCCce-----eeeHHHHHHHHHcCChhhHHHHHHHhccc--CCC--CCChhhHHHHHHHhcCcc
Q 040319 382 CGRMADAEKMFYRWPTDRDDS-----IIWTSMICGYARSGKPEHAILLFHQSQSE--ATV--VPDEIALTSVLGVCGTLG 452 (812)
Q Consensus 382 ~g~~~~A~~~f~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~g~--~p~~~t~~~ll~a~~~~~ 452 (812)
...+++|..-|+.+..-.+.- ...-.||..+.+.+++++.++.|.+|..- ..+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346778888887654211211 23345788889999999999888887530 111 223446777887777666
Q ss_pred chHHHHHHHHHHHHh-----CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--------CC-------hhHHHHHHH
Q 040319 453 FHEMGKQIHSYALKT-----GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--------HD-------IVSWNGLIA 512 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~-----g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------~~-------~~~~~~li~ 512 (812)
+.+.-..+++-..+. +-..=..+-+-|...|...|.+.+-.+++.++.. .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666666665543321 1111122334567778888888888777776542 11 235666677
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc---CCCCchHHHHHHHHHHhhhhcCccCCc-----chHHHHH
Q 040319 513 GHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYR---YTNLNLVDSCRKLFLSMKTIYNIEPTS-----EHYASLV 584 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~---~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~li 584 (812)
.|....+-.+-..++++.+.-.-.........++.-|. |.+.|.+++|..-|-+.-+.|.-.-++ --|-.+.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 78888888888888988776332233344556677675 224678888775444443324322222 2355566
Q ss_pred HHHhhcCC----hHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040319 585 SVLGYWGF----LEEAEETINNMPFQPKVSVWRALLDSCRIR 622 (812)
Q Consensus 585 ~~l~~~g~----~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 622 (812)
+++.+.|- -.||. -....|.......|+.+|...
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc
Confidence 77777662 12221 001345567778888887654
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.45 E-value=72 Score=26.19 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVL 544 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 544 (812)
+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 345667899999999999998899999988755 45777777777777777765 555555543
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.36 E-value=11 Score=23.17 Aligned_cols=24 Identities=4% Similarity=-0.088 Sum_probs=11.8
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCC
Q 040319 618 SCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
++...|+.+.|...++++++..|+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555555555555554443
No 338
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.13 E-value=3e+02 Score=32.81 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=64.4
Q ss_pred eeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCC--CchhHHHHHHH
Q 040319 404 IWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFS--SDLGVANSMVS 481 (812)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~ 481 (812)
-|..|+.-|...|..++|+++|.+... ..-.-|... .+.-+.+.+++.+.+-+ +-...|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d-~~~~~d~~~-------------~~~~e~ii~YL~~l~~~~~~Li~~y~~--- 568 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD-EDSDTDSFQ-------------LDGLEKIIEYLKKLGAENLDLILEYAD--- 568 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc-cccccccch-------------hhhHHHHHHHHHHhcccchhHHHHHhh---
Confidence 478899999999999999999998875 110111111 11112233344443322 11111111
Q ss_pred HhhhcCCHHHHHHHHccCCCCChhHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040319 482 MYFKCCNMSNAIKAFNKMPSHDIVSWN-GLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAY 549 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 549 (812)
..-..+.+...++|..-......+.+ --+-.|......+-++..++.+....-.++..-++.++.-|
T Consensus 569 -wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 569 -WVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred -hhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 11234455555555541110111111 12334555666677777777777665555655555555544
No 339
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.90 E-value=1e+02 Score=30.25 Aligned_cols=183 Identities=9% Similarity=0.071 Sum_probs=109.7
Q ss_pred hcCCHHHHHHHHccCCC----CC---hhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCC--CHHHHHHHHHHhcCC
Q 040319 485 KCCNMSNAIKAFNKMPS----HD---IVSWNGLIAGHLLHRQGDEALAVWSSMEK---ASIKP--DAITFVLIISAYRYT 552 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~~----~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p--d~~t~~~ll~a~~~~ 552 (812)
+..+.++|+.-|+++.+ +. -.....||..+.+.|++++-++.+.+|+- +.+.- ...+.++++.-.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt- 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST- 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh-
Confidence 34567788887776654 22 23445678888899999999988888864 11222 34567777776665
Q ss_pred CCchHHHHHHHHHHhhh----hcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-------HHHHHH
Q 040319 553 NLNLVDSCRKLFLSMKT----IYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-------FQPK-------VSVWRA 614 (812)
Q Consensus 553 ~~g~~~~a~~~~~~m~~----~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-------~~p~-------~~~~~~ 614 (812)
....+--.++++.-.. ..+-...-.+-.-+..+|...|.+..-..+++++. -+.| .-+|..
T Consensus 118 -S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 118 -SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred -hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 5555544444443221 11122334455667777777777777777766643 1112 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchH------HHHHhhhhhCCCcchHHH-HHHHH
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPATY------ILVSNLYSSSGRWHNSEL-VREDM 669 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~------~~l~~~y~~~g~~~~a~~-~~~~m 669 (812)
-+..|..++|-..-..++++++.+..--|... .+=+.+..+.|+|++|.. +|+..
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 45556677777777888888887654322222 223457788889998865 44444
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.86 E-value=35 Score=36.29 Aligned_cols=119 Identities=14% Similarity=0.075 Sum_probs=75.9
Q ss_pred cCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHH
Q 040319 517 HRQGDEA-LAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEE 595 (812)
Q Consensus 517 ~g~~~~A-~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~ 595 (812)
.|+...| .++|.-+....-.|+.+-..+.+ .++ .|.++.+...+..... -+.....+..|++..+...|++++
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~--lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSH--LGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHH--hhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 4555444 34555555555667776666555 345 7888888877766543 234456677788888888888888
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 596 AEETINNMPF--QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 596 A~~~~~~m~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
|+.+-..|.. -.++-+...-.......|-++++...+++++.+.|.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8888777651 112222222333345667788888888888888765
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.57 E-value=13 Score=21.90 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
.|..+...|...|++++|...|++.++ +.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~--~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE--LDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCC
Confidence 566677777788888888888887766 4443
No 342
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.50 E-value=3.8 Score=41.38 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=46.1
Q ss_pred CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 591 GFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 591 g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
|.+++|++.+.... ..| ....+..-.+++.+.+....|++-+..+++++|+.+.-|-.-+......|+|++|...+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 33444444444322 222 2333333344445555555666666666666666666666666666666666666666666
Q ss_pred HHhCCC
Q 040319 669 MREKGF 674 (812)
Q Consensus 669 m~~~g~ 674 (812)
.-+.+.
T Consensus 208 a~kld~ 213 (377)
T KOG1308|consen 208 ACKLDY 213 (377)
T ss_pred HHhccc
Confidence 655554
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.20 E-value=92 Score=27.84 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMPFQ-PKVSVWRALLDSCRI 621 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~ 621 (812)
.++.+++..+++.|.- +.|+ .+.-..-+-.+.+.|+++||..++++..-. |....-..|+..|..
T Consensus 23 ~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 23 SADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred cCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 4555556666555543 3443 122222233455677777777777776532 233444445544443
No 344
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.14 E-value=20 Score=36.23 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=71.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhh
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP----FQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNL 652 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~----~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 652 (812)
+|--=.+-|.+..++..|...|.+-. -.|| .+.|+.-..+-...||+..++.-..+++.++|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34444566778899999999988743 2343 56676666666778999999999999999999999999999999
Q ss_pred hhhCCCcchHHHHHHHH
Q 040319 653 YSSSGRWHNSELVREDM 669 (812)
Q Consensus 653 y~~~g~~~~a~~~~~~m 669 (812)
+....++++|..+.+.-
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999977777665543
No 345
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.95 E-value=41 Score=37.91 Aligned_cols=179 Identities=15% Similarity=0.201 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh----------hHHHHHHHhcCccchHHHHHHHHHHH-HhC-CCCch
Q 040319 406 TSMICGYARSGKPEHAILLFHQSQSEATVVPDEI----------ALTSVLGVCGTLGFHEMGKQIHSYAL-KTG-FSSDL 473 (812)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----------t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g-~~~~~ 473 (812)
..++-.|-...+++..+++.+.++. -||.. .|.-.++-=-+-|+-+.|....--+. +.| +.|
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~----iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap-- 278 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKR----IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP-- 278 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHh----CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC--
Confidence 3455566667777777777777664 23321 12222222233455555555433333 222 222
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhc
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI---TFVLIISAYR 550 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~ 550 (812)
++||-||++-+ .|- +-+.|...+..+.|++.|++.-+ +.|+.. -+..||.|-.
T Consensus 279 -------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 -------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred -------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 34566665422 111 12334455666788889998888 888774 3555555522
Q ss_pred CCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040319 551 YTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 551 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
+ .++...++ .. .--.|-.+++|.|.++.-.+.++- ...+.+-...+|..+|.+
T Consensus 335 ~----~Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 335 E----HFENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQ 387 (1226)
T ss_pred h----hccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHH
Confidence 2 12222211 11 112345677899988876655532 234566667889999999
Q ss_pred HHHHHHccCCC
Q 040319 631 VAKHILAMEPQ 641 (812)
Q Consensus 631 ~~~~~~~~~p~ 641 (812)
++++++++.|.
T Consensus 388 Aae~mfKLk~P 398 (1226)
T KOG4279|consen 388 AAEMMFKLKPP 398 (1226)
T ss_pred HHHHHhccCCc
Confidence 99999999985
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.78 E-value=49 Score=35.22 Aligned_cols=137 Identities=13% Similarity=0.119 Sum_probs=92.2
Q ss_pred CchHHHHH-HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCR-KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~-~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++..|- ++|..+.. +.-.|+. .-.........|.++.|++.+.... +.....+...++......|+.+.|..
T Consensus 302 ~gd~~aas~~~~~~lr~-~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRN-QQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHh-CCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 56666554 45555554 4334443 3333344567899999999998765 44556677888888888999999999
Q ss_pred HHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeC
Q 040319 631 VAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVR 695 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~ 695 (812)
.++-++.-+-+++.....-+-.-...|-+|++.-.+++.-....+...| |+..-.....|-.|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~~~~~~~~~ 441 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeeeccceeccCc
Confidence 9999998777766665555555556688899999999886554444434 66443333344433
No 347
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=63.43 E-value=15 Score=24.03 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=10.4
Q ss_pred HHHHHhhhhhCCCcchHHHHHHHH
Q 040319 646 YILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 646 ~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+..|+.+|...|++++|.++.++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 334444444444444444444443
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.27 E-value=56 Score=29.07 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 040319 503 DIVSWNGLIAGHLLHRQ-GDEALAVWSSMEKASIKPDAITFVLIISAYRY 551 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 551 (812)
+-.+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33455555555543333 23344555555555555555555555555543
No 349
>PRK12798 chemotaxis protein; Reviewed
Probab=63.07 E-value=2.1e+02 Score=30.44 Aligned_cols=178 Identities=11% Similarity=0.119 Sum_probs=113.1
Q ss_pred cCCHHHHHHHHccCCC----CChhHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHhcCCCCch
Q 040319 486 CCNMSNAIKAFNKMPS----HDIVSWNGLIAGHL-LHRQGDEALAVWSSMEKASIKPDAIT----FVLIISAYRYTNLNL 556 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~a~~~~~~g~ 556 (812)
.|+-++|.+.+..+.. +....+-+|+.+-. ...++.+|+++|++..- ..|-... ...-+.-... .|+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~--~g~ 200 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQ--LGD 200 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHh--cCc
Confidence 6899999999988875 45567777776554 45678999999999887 6675432 2222333455 889
Q ss_pred HHHHHHHHHHhhhhcCccCCcchH-HHHHHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040319 557 VDSCRKLFLSMKTIYNIEPTSEHY-ASLVSVLGYWG---FLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVA 632 (812)
Q Consensus 557 ~~~a~~~~~~m~~~~~~~p~~~~y-~~li~~l~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 632 (812)
.+++..+-..-...+...|=...| .-++.++.+.+ ..+.-..++..|.-.--..+|..+...-...|+.+.|..+.
T Consensus 201 ~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 201 ADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888877766665555555543333 22333333333 34444455555542223457777778888999999999999
Q ss_pred HHHHccCCCCCchHHHHHhhhhhCC-----CcchHHHHHHH
Q 040319 633 KHILAMEPQDPATYILVSNLYSSSG-----RWHNSELVRED 668 (812)
Q Consensus 633 ~~~~~~~p~~~~~~~~l~~~y~~~g-----~~~~a~~~~~~ 668 (812)
++++.+.+. ...-...+++|...- +.++|.+....
T Consensus 281 ~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 281 ERALKLADP-DSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred HHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 999998743 444445555555433 34455444443
No 350
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.66 E-value=3e+02 Score=31.75 Aligned_cols=168 Identities=10% Similarity=0.133 Sum_probs=81.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhc
Q 040319 71 ISGLAKLGREEEAIELFFRMRSEGIVPN---EHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKF 147 (812)
Q Consensus 71 i~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 147 (812)
|..+.+.+.+++|+.+-+.-. |..|. .......|..+...|+++.|-...-.|.. .+..-|.--+.-+..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 556777888888887765533 22332 23344555555666666666554443331 1222222222223332
Q ss_pred CCCHHHHHHHHhcCCC----CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHH
Q 040319 148 SFCLDYLLKLFDELPH----KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRA 223 (812)
Q Consensus 148 g~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 223 (812)
+ .. ..++.-+|. -+...|..++..++. .+...-.++.++ .+++.+.-..++++-
T Consensus 437 ~-~l---~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~------Wp~~Lys~l~iisa~----------- 494 (846)
T KOG2066|consen 437 D-QL---TDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKE------WPGHLYSVLTIISAT----------- 494 (846)
T ss_pred c-cc---chhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHh------CChhhhhhhHHHhhc-----------
Confidence 2 21 122222332 144567777777666 332222222222 233333322333221
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcch
Q 040319 224 VHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDII 269 (812)
Q Consensus 224 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 269 (812)
..+..+. .-+..+.-.|+..|...+++++|.+++-....+++.
T Consensus 495 -~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 495 -EPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred -chHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 1111111 112223334889999999999999999888776553
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=61.27 E-value=3.3e+02 Score=32.04 Aligned_cols=185 Identities=12% Similarity=0.084 Sum_probs=102.7
Q ss_pred hhcCCHHHHHHHHccCC----CCCh-------hHHHHHHHHH-HhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 040319 484 FKCCNMSNAIKAFNKMP----SHDI-------VSWNGLIAGH-LLHRQGDEALAVWSSMEKAS----IKPDAITFVLIIS 547 (812)
Q Consensus 484 ~k~g~~~~A~~~f~~~~----~~~~-------~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g----~~pd~~t~~~ll~ 547 (812)
....++++|..+..+.. .|+. ..|+++-.-. ...|++++|+++.+.....= ..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567777776665432 2322 3566654433 34688899999888877631 1222344444445
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHH-----HHHhhcCChHHHHHH--H---HhCC--CCC----CHHH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLV-----SVLGYWGFLEEAEET--I---NNMP--FQP----KVSV 611 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li-----~~l~~~g~~~~A~~~--~---~~m~--~~p----~~~~ 611 (812)
+..- .|++++|..+..+..+ ..-.-+..++...+ ..+-..|+...|... + +.-. -+| -..+
T Consensus 506 a~~~--~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 506 AAHI--RGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred HHHH--hchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 5555 7899999888776554 11123444444333 335566743333222 2 2211 222 2234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccC----CC--CC-chHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 612 WRALLDSCRIRLNTTIGKRVAKHILAME----PQ--DP-ATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 612 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----p~--~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
...++.++.+ .+.++..+.+.+++. |. ++ ..+.+|+.++...|+.++|......+.....
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 4444444333 566665555555542 32 11 2234789999999999999999988876443
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.22 E-value=24 Score=33.54 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=45.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 581 ASLVSVLGYWGFLEEAEETINN-MPFQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
+.-+..+.+.+++.+|+.+.+. ..-+| |...-..|...++..|+.++|..-.+-+-+++|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 4445667778888888877655 44556 566666777778888888888888888888888754
No 353
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.71 E-value=1.5e+02 Score=27.91 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=60.3
Q ss_pred HHHHHHhcCChHHHHHHHhcCC-CCcchhHHH-----HHHHHHhhCChhHHHHHhccCCCCCccc--HHHHHHHHHhCCC
Q 040319 243 LIGFYTKCGRVKDVVALLERMP-VMDIITLTE-----IIIAYMEFGYVDLAVEIFDKMPEKNSVS--YNALLAGYCKNGK 314 (812)
Q Consensus 243 li~~~~~~g~~~~A~~l~~~~~-~~~~~~~~~-----li~~~~~~g~~~~A~~~f~~m~~~d~~~--~~~li~~~~~~g~ 314 (812)
+...+..+|++++|...++... .+.-..+.. |.+.....|.+|+|+.+++...+++-.+ ...-...+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 3456677788888888777543 332223333 4556778899999999998887664333 2223357889999
Q ss_pred hHHHHHHHHHHHHcC
Q 040319 315 AMEALGLFVKLLEEG 329 (812)
Q Consensus 315 ~~~A~~l~~~m~~~g 329 (812)
-++|..-|.+.+..+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999998876
No 354
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=60.42 E-value=1e+02 Score=33.88 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=66.9
Q ss_pred HHHHHHhhhcCCHHHHHHHHccCCCC--Chh---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 040319 477 NSMVSMYFKCCNMSNAIKAFNKMPSH--DIV---SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY 551 (812)
Q Consensus 477 ~~Li~~y~k~g~~~~A~~~f~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 551 (812)
..|+.-|.+++++++|..++..|.=. ... +.+.+.+.+.+..-..+....++.++-.=..|....-......|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 35777899999999999999988631 122 3334444444444445555555555543333332111111111111
Q ss_pred CCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040319 552 TNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 552 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
--.+-|+++|..+ .|.+++++|..+--++. +.-.+.-+-......|+.++|..
T Consensus 492 ---~V~~~aRRfFhhL--------------------LR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 492 ---PVSDLARRFFHHL--------------------LRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred ---HHHHHHHHHHHHH--------------------HHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhhc
Confidence 1122344444444 46788888887766554 22233333344455666666643
No 355
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.13 E-value=44 Score=29.74 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=57.8
Q ss_pred cchHHHHHHHHccCChhhHHHHHhcCCC---------CChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCChhhHH
Q 040319 34 RFGNPLISAYLKLGHVADAYKIFYGLSS---------PNVVSFTSLISGLAKLGR-EEEAIELFFRMRSEGIVPNEHSFV 103 (812)
Q Consensus 34 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~ 103 (812)
...|+++.-.+..+++.....+++.+.. .+-.+|+.++.+.+.... ---+..+|.-|.+.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4467777777777777777777776642 445578888888866655 345677888888878888888888
Q ss_pred HHHHHHHhc
Q 040319 104 AILTACIRL 112 (812)
Q Consensus 104 ~ll~~~~~~ 112 (812)
.++++|.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888888765
No 356
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.98 E-value=17 Score=29.44 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 630 RVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 630 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..+++.++.+|+|...-..++..|...|++++|.+.+-.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456667777888888888888888888888888887776643
No 357
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.50 E-value=35 Score=32.97 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCHH-------HHHHHHHHHHccCCC------CCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 609 VSVWRALLDSCRIRLNTT-------IGKRVAKHILAMEPQ------DPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~-------~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.++.-+.+.|+..|+.+ .|...++++++.+.. ......+++.++.+.|+.++|.+.+.++-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 345556667788888854 444555555554422 235677899999999999999999998743
No 358
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.74 E-value=1.8e+02 Score=28.23 Aligned_cols=18 Identities=6% Similarity=0.209 Sum_probs=11.6
Q ss_pred HhhhcCCHHHHHHHHccC
Q 040319 482 MYFKCCNMSNAIKAFNKM 499 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~ 499 (812)
.++-.+++++|.++|.+.
T Consensus 23 lfgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA 40 (288)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 345556777777777654
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.79 E-value=2.2e+02 Score=30.80 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=70.6
Q ss_pred HhccCCchHHHHHHHHHHHhccCCCccc--hHHHHHHHHccCChhhHHHHHhcCCCCChh--hHHHHHHHHHhcCChhHH
Q 040319 8 SVQCGEVSLAKAIHASLIKLLLEQDTRF--GNPLISAYLKLGHVADAYKIFYGLSSPNVV--SFTSLISGLAKLGREEEA 83 (812)
Q Consensus 8 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~a 83 (812)
....|+++. ...+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+-+...+..|+.+.+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 334566554 445566787665433 455666667778887777666654433322 112234445567776655
Q ss_pred HHHHHHHHHCCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHH--HHHHHHHhhhcCCCHHHHHHHH
Q 040319 84 IELFFRMRSEGIVPNEH---SFVAILTACIRLLELELGFQIHALIVKMGCVDSVFV--TNALMGLYGKFSFCLDYLLKLF 158 (812)
Q Consensus 84 ~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~~a~~~f 158 (812)
..+++ .|...+.. .-.+.+...+..|+.+ +.+.+.+.|..++... ..+.+...+..| +.+.+..++
T Consensus 85 ~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~-~~~~v~~Ll 155 (413)
T PHA02875 85 EELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMG-DIKGIELLI 155 (413)
T ss_pred HHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHH
Confidence 44443 33211110 0112333344455543 4445556665554321 122334444556 666666666
Q ss_pred hcCC
Q 040319 159 DELP 162 (812)
Q Consensus 159 ~~~~ 162 (812)
+...
T Consensus 156 ~~g~ 159 (413)
T PHA02875 156 DHKA 159 (413)
T ss_pred hcCC
Confidence 6544
No 360
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.54 E-value=2.6e+02 Score=29.62 Aligned_cols=161 Identities=18% Similarity=0.237 Sum_probs=89.4
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPS------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS 547 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 547 (812)
....-+.+.|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|++......-.+..+. |+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~~-------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PDA-------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---chh--------
Confidence 3455678899999999999999988654 22345555555555566666665555554441 110
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC---------CCC-CHHHHHHHHH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP---------FQP-KVSVWRALLD 617 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p-~~~~~~~ll~ 617 (812)
+.... ..+.+....+..++.+..+ ++..|...|-..+ +.| |..+|..| .
T Consensus 220 ----------------~~~~~--q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL-c 278 (466)
T KOG0686|consen 220 ----------------NENLA--QEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL-C 278 (466)
T ss_pred ----------------hhhHH--HhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhh-H
Confidence 11111 1133445556666655554 4444444332221 345 44455443 3
Q ss_pred HHHhcCC--HH---HHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 618 SCRIRLN--TT---IGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 618 ~~~~~~~--~~---~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...-++ +. .....++..++++|+ ....+..-|. +++....++.++++.
T Consensus 279 ALAtfdr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 279 ALATFDRQDLKLNVIKNESFKLFLELEPQ---LREILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred hhccCCHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHhh--hhHHHHHHHHHHhcc
Confidence 3333232 22 223358888899886 5555555553 677777777777643
No 361
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=56.99 E-value=3e+02 Score=30.15 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=55.7
Q ss_pred eeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 040319 404 IWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMY 483 (812)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 483 (812)
..-+++..+.++....-...+-.+|.. +.-+...|..++..+... ..+.--.++.++.+..+. |+.....|++.|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~---~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLE---YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 344556666666666666666666665 344555666666666555 444455566666665543 555666677777
Q ss_pred hhcCCHHHHHHHHccCC
Q 040319 484 FKCCNMSNAIKAFNKMP 500 (812)
Q Consensus 484 ~k~g~~~~A~~~f~~~~ 500 (812)
-+ ++.+.+...|.++.
T Consensus 143 Ek-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 143 EK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HH-hchhhHHHHHHHHH
Confidence 76 77777777776643
No 362
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=56.72 E-value=2.8e+02 Score=29.77 Aligned_cols=62 Identities=18% Similarity=0.067 Sum_probs=32.0
Q ss_pred CccchHHHHHHHHccCChhhHHHHHhcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040319 32 DTRFGNPLISAYLKLGHVADAYKIFYGLSSPNV---VSFTSLISGLAKLGREEEAIELFFRMRSE 93 (812)
Q Consensus 32 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 93 (812)
|...|-.||.-|...+..++-+++++.|..|-. ..|..-+++=....++.....+|.+-+..
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 445555555555555555555555555554432 24554555444455555555555554443
No 363
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.58 E-value=1.8e+02 Score=31.52 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHh
Q 040319 300 VSYNALLAGYCK---NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNAC 344 (812)
Q Consensus 300 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 344 (812)
.....+++++.+ .++.+.|+.++..|.+.|..|....-..+..++
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345556666655 478999999999999999888866655555553
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.43 E-value=2.9e+02 Score=29.84 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=35.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHhhhcCCC
Q 040319 75 AKLGREEEAIELFFRMRSEGIVPNEHS--FVAILTACIRLLELELGFQIHALIVKMGCVDSVF--VTNALMGLYGKFSFC 150 (812)
Q Consensus 75 ~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~ 150 (812)
++.|+.+- ++.+.+.|..|+... ..+.|..++..|+.+ +...+.+.|..|+.. ....-+...++.| +
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g-~ 80 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG-D 80 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC-C
Confidence 34455433 334444566665432 234445555556554 334444555444321 1112233334445 5
Q ss_pred HHHHHHHHhcC
Q 040319 151 LDYLLKLFDEL 161 (812)
Q Consensus 151 ~~~a~~~f~~~ 161 (812)
.+.+..+++..
T Consensus 81 ~~~v~~Ll~~~ 91 (413)
T PHA02875 81 VKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHHcC
Confidence 55555555543
No 365
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.38 E-value=3.2e+02 Score=31.05 Aligned_cols=82 Identities=16% Similarity=0.098 Sum_probs=45.8
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC-CCcchHHHHHH
Q 040319 593 LEEAEETINNMP--FQPKVSVWRALLDSCR--IRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS-GRWHNSELVRE 667 (812)
Q Consensus 593 ~~~A~~~~~~m~--~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~ 667 (812)
...|.++|...- -.+++..+.++.-.+- ...+.+.|...++++-+.++ +.+...++..|.-. ++++.+.-...
T Consensus 344 ~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~ 421 (552)
T KOG1550|consen 344 YRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYL 421 (552)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHH
Confidence 455555555533 2223333332222221 23467788888888887773 34444454444333 78888888777
Q ss_pred HHHhCCCCC
Q 040319 668 DMREKGFRK 676 (812)
Q Consensus 668 ~m~~~g~~~ 676 (812)
.+.+.|.+.
T Consensus 422 ~~a~~g~~~ 430 (552)
T KOG1550|consen 422 YLAELGYEV 430 (552)
T ss_pred HHHHhhhhH
Confidence 777766643
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=55.91 E-value=65 Score=30.46 Aligned_cols=74 Identities=19% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc--CccCCcchHHHHHHHHhhcCChHHHH
Q 040319 521 DEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY--NIEPTSEHYASLVSVLGYWGFLEEAE 597 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~--~~~p~~~~y~~li~~l~~~g~~~~A~ 597 (812)
++|.+.|-++...+.--+......|.+-|. ..+.+++..++....+-+ +-.++++.+.+|+..+-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~---krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT---KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 344444544444443333222223332232 244455555444443311 11344555555555555555555543
No 367
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.27 E-value=1.8e+02 Score=29.38 Aligned_cols=160 Identities=20% Similarity=0.205 Sum_probs=72.8
Q ss_pred HHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHH
Q 040319 142 GLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEG 221 (812)
Q Consensus 142 ~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a 221 (812)
.-+.+.|....-|.++|..-.. ....|.+|+.+-+.+.-+.-+++ ++|+..|--.....+...|--+..
T Consensus 174 d~LVkeGi~l~F~~~lFk~~~~--Ek~i~~lis~Lrkg~md~rLmef---------fPpnkrs~E~Fak~Ft~agL~elv 242 (412)
T KOG2297|consen 174 DNLVKEGIALSFAVKLFKEWLV--EKDINDLISSLRKGKMDDRLMEF---------FPPNKRSVEHFAKYFTDAGLKELV 242 (412)
T ss_pred hhHHHHhHHHHHHHHHHHHHHh--hccHHHHHHHHHhcChHhHHHHh---------cCCcchhHHHHHHHHhHhhHHHHH
Confidence 4455566566677777765432 12235566665544433332222 366666655555555444422111
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh-cCCC---Ccc----hhHHHHHHHHHhhCChh-HHHHHhc
Q 040319 222 RAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLE-RMPV---MDI----ITLTEIIIAYMEFGYVD-LAVEIFD 292 (812)
Q Consensus 222 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~-~~~~---~~~----~~~~~li~~~~~~g~~~-~A~~~f~ 292 (812)
+++..-... ..-...-..|..-..+...+++...... +|+. |+. ..|+.++++---+.+-+ -|.+.+
T Consensus 243 -ey~~~q~~~--~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qal- 318 (412)
T KOG2297|consen 243 -EYHRNQQSE--GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQAL- 318 (412)
T ss_pred -HHHHHHHHH--HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHH-
Confidence 111100000 0001112233333344444555444332 3332 222 45766665433221111 122222
Q ss_pred cCCCCCcccHHHHHHHHHhCCChHHHHH
Q 040319 293 KMPEKNSVSYNALLAGYCKNGKAMEALG 320 (812)
Q Consensus 293 ~m~~~d~~~~~~li~~~~~~g~~~~A~~ 320 (812)
+....|..|+.+++..|+.+-.+-
T Consensus 319 ----rhlK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 319 ----RHLKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred ----HHHHhhhHHHHHHhcCChHHHHHH
Confidence 234568889999999998876543
No 368
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.08 E-value=38 Score=24.13 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=27.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS 547 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 547 (812)
.+.-|+.+.|++++|.+..+.+++ +.|+..-...|-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 356678899999999999999999 8898766555543
No 369
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.75 E-value=4.9e+02 Score=31.70 Aligned_cols=79 Identities=13% Similarity=-0.057 Sum_probs=32.9
Q ss_pred CCcchhHHHHHHHHHhhCChhHHH-HHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 040319 265 VMDIITLTEIIIAYMEFGYVDLAV-EIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNA 343 (812)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~-~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 343 (812)
.+|...-...+.++.+.|..+.+. .+...+.++|...-...+.++...+. +++...+..+++ .|+...-...+.+
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~a 861 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLA 861 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHH
Confidence 444444444555555554433321 22233333443333334444444443 234444444443 2344444444444
Q ss_pred hccc
Q 040319 344 CGLI 347 (812)
Q Consensus 344 ~~~~ 347 (812)
+.+.
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 4443
No 370
>PRK10941 hypothetical protein; Provisional
Probab=53.69 E-value=60 Score=32.58 Aligned_cols=68 Identities=15% Similarity=0.032 Sum_probs=56.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
+.+-.+|.+.++++.|+...+.+. +.| |+.-|..-.-.+.+.|....|..-++..++..|+++.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 345567888999999999999866 566 56678888888999999999999999999999998876544
No 371
>PF15161 Neuropep_like: Neuropeptide-like
Probab=53.60 E-value=5.7 Score=27.74 Aligned_cols=16 Identities=31% Similarity=0.783 Sum_probs=11.6
Q ss_pred ccccccchhhHHHHhhh
Q 040319 768 NILTCGDCHSFLKYVSV 784 (812)
Q Consensus 768 n~~~c~~ch~~~k~~s~ 784 (812)
..|-|.|||.|- |+-+
T Consensus 12 esRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCchhhHHHH-HHHH
Confidence 468999999664 5543
No 372
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=53.59 E-value=2.1e+02 Score=27.47 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhh-hcCccCCcchHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKT-IYNIEPTSEHYASL 583 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~y~~l 583 (812)
|.+..++.+.+.+...+|++..++-++ -+|.. -+-..++.-++- .|++++|..-++...+ .....+....|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcv--aGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCV--AGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhh--cchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 345566777888888899988888777 45654 344445556666 8999998877665543 11222335556666
Q ss_pred HHHHhhcCChHHHH-HHHHh--CC---CCCCHHHHHHHH-HHHH--hcCCHHHHHHHHHHHHccCCCCCc
Q 040319 584 VSVLGYWGFLEEAE-ETINN--MP---FQPKVSVWRALL-DSCR--IRLNTTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 584 i~~l~~~g~~~~A~-~~~~~--m~---~~p~~~~~~~ll-~~~~--~~~~~~~a~~~~~~~~~~~p~~~~ 644 (812)
|.+- .+. ++|.. .| ..| ...|-..| .+.. .-|.-+......+++++.-|...+
T Consensus 79 ir~e-------a~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 79 IRCE-------AARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHH-------HHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 5432 222 23332 23 123 34455444 4433 334556666778888888776443
No 373
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.38 E-value=20 Score=34.24 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=45.5
Q ss_pred HHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 586 VLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 586 ~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
++...|+.+.|.+++.+.. ..| ....|--+...--+.|+++.|-+++++.++++|+|-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456777777888887754 445 577888888888889999999999999999998763
No 374
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=53.24 E-value=2.6e+02 Score=28.28 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHhhhcCCCHHHHHHHHhcCC-----CCCcchHHHHHHHHHcCCChhHHHHHHH
Q 040319 131 VDSVFVTNALMGLYGKFSFCLDYLLKLFDELP-----HKDTVSWNTVISSVVNEFEYEKAFELFR 190 (812)
Q Consensus 131 ~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~ 190 (812)
.++..+-...|..+++.+ +.....+.++... ..|...|..+|....+.|+..-...+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~-dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESR-DWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcc-cHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 344444445555555555 5555555554322 2355666666666666666555555443
No 375
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.40 E-value=7.2 Score=41.43 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchH-HHHHHHHhhcCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHY-ASLVSVLGYWGFLEEAEETINN-MPFQPK-VSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y-~~li~~l~~~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.+.++.|...+..+.+ +.|+-.+| ..=..++.+.+.+..|+.=..+ +...|. ...|--=..+|...+....|..
T Consensus 17 ~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred cchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 4566677776666665 45653333 3333555666666666543333 234443 2222222344555566666666
Q ss_pred HHHHHHccCCCCCc
Q 040319 631 VAKHILAMEPQDPA 644 (812)
Q Consensus 631 ~~~~~~~~~p~~~~ 644 (812)
.++....+.|+++.
T Consensus 94 ~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHhhhcCcCcHH
Confidence 77777777776554
No 376
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=52.02 E-value=36 Score=31.43 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcC
Q 040319 520 GDEALAVWSSMEKASIKPDA-ITFVLIISAYRY 551 (812)
Q Consensus 520 ~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~ 551 (812)
+++|+.-|++.+. +.|+. .++..+-.|+..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHH
Confidence 4567777777777 88887 667777666654
No 377
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.58 E-value=23 Score=21.36 Aligned_cols=29 Identities=7% Similarity=0.156 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHh
Q 040319 623 LNTTIGKRVAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 623 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 651 (812)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46677888888888888877777766554
No 378
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.35 E-value=33 Score=23.30 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=18.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 040319 510 LIAGHLLHRQGDEALAVWSSMEKAS 534 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~m~~~g 534 (812)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777777788887777777643
No 379
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.75 E-value=1.3e+02 Score=26.43 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHc-cCCCC-CchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 625 TTIGKRVAKHILA-MEPQD-PATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 625 ~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+.++..+++.+++ -.|.. -.....|+-.+++.|+++.+.++.+..
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 4444555555554 22221 122233444455555555555555544
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.62 E-value=1.5e+02 Score=24.80 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666666666665443 222233333445677888888855555555688888877654 467777777777777655
Q ss_pred CC
Q 040319 533 AS 534 (812)
Q Consensus 533 ~g 534 (812)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.19 E-value=45 Score=36.57 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=69.9
Q ss_pred CchHHHHHHHHHHhhhhcCccCC--cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT--SEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGK 629 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~ 629 (812)
.|+...|...+..... ..|. -.....|..++.+.|...+|-.++.+.. ....+.++.++.+++....|++.|.
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 6777788877766643 3343 3345667777788888888887776533 2334567778888888889999999
Q ss_pred HHHHHHHccCCCCCchHHHHHhhh
Q 040319 630 RVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 630 ~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
+.++++++++|+++..-..|-.+-
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999887766665443
No 382
>PF13934 ELYS: Nuclear pore complex assembly
Probab=50.12 E-value=1.5e+02 Score=28.97 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=9.8
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 040319 510 LIAGHLLHRQGDEALAVWSS 529 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~ 529 (812)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444445555555555444
No 383
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=50.11 E-value=47 Score=27.40 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=50.0
Q ss_pred hhhhhhhhHHHHHHHhhcCCCCCCcEEEEcccccccchhhHHHHhhhhcceEEEEecCC
Q 040319 738 KDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDAS 796 (812)
Q Consensus 738 ~~~~~~hse~la~~~~~~~~~~~~~~~~~~n~~~c~~ch~~~k~~s~~~~r~i~~rd~~ 796 (812)
+..|-.|.|.-++--=-.+..+|..+-|.--++-|..|-.++.-.|.-.|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 44578899998886555566669999999999999999999999999999999988744
No 384
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.42 E-value=2.2e+02 Score=26.32 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=72.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH-----HHHH
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDAI-TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL-----VSVL 587 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l-----i~~l 587 (812)
+++.+..++|+.-|.++.+.|...=.+ .-.-.-....+ .|+...|...|+++-.+. |.+....-+ .-+|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~--kgdta~AV~aFdeia~dt---~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ--KGDTAAAVAAFDEIAADT---SIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh--cccHHHHHHHHHHHhccC---CCcchhhHHHHHHHHHHH
Confidence 356677788888888877765432211 11112222344 788888888888887643 222222111 2345
Q ss_pred hhcCChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 588 GYWGFLEEAEETINNMPFQ--P-KVSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 588 ~~~g~~~~A~~~~~~m~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
...|.+++....++.+..+ | ....-.+|.-+-.+.|++..|...++++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6778888877777765522 2 233445566667788999999888888776
No 385
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.18 E-value=1.3e+02 Score=28.47 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=20.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 617 DSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 617 ~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
.+|.+...++.|..-++++++.+|..
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 35666677888888889999998874
No 386
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=48.16 E-value=32 Score=34.34 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=34.8
Q ss_pred HhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 040319 587 LGYWGFLEEAEETINNM-PFQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYI 647 (812)
Q Consensus 587 l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 647 (812)
.-+.|+.++|..+|+.. .+.|+ +.+..-+..--..++++-+|.+++-+++.+.|.+..+.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 35667777777776653 34553 333333333344456666777777777777776655543
No 387
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.16 E-value=2.7e+02 Score=27.09 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=36.0
Q ss_pred HHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 493 IKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 493 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
..+|+-..+|.+.....|+..+ ..+++++|.+++.++-+.|+.|..+.
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Dii 275 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDII 275 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 3455555667777777777655 46789999999999999999887643
No 388
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=47.54 E-value=1.1e+02 Score=32.29 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=46.7
Q ss_pred CHHHHHHHH---HHHHhcCCHHHHHHHHHHHHccCCC-CCchHHHHHhhhhh-CCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALL---DSCRIRLNTTIGKRVAKHILAMEPQ-DPATYILVSNLYSS-SGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~-~g~~~~a~~~~~~m~~ 671 (812)
|...|.++. ....+.|-..-|.+..+-++.++|. ||-.-...++.|+= +++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 445555554 3566788999999999999999999 88877788887774 4566666666665443
No 389
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.50 E-value=53 Score=32.87 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=36.3
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK 608 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~ 608 (812)
.|+.++|..+|+.... +.|+ ++...-+........++-+|-+.+-+.. +.|.
T Consensus 129 ~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred ccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 7999999999998775 5565 5555556555556666777777766644 5663
No 390
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=46.48 E-value=48 Score=21.35 Aligned_cols=30 Identities=7% Similarity=-0.084 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHccCCC
Q 040319 612 WRALLDSCRIRLNTTIGKRV--AKHILAMEPQ 641 (812)
Q Consensus 612 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~~p~ 641 (812)
|-++...+...|+.+.|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44556667777888888877 4466666664
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=46.13 E-value=43 Score=22.78 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=17.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcC
Q 040319 305 LLAGYCKNGKAMEALGLFVKLLEEG 329 (812)
Q Consensus 305 li~~~~~~g~~~~A~~l~~~m~~~g 329 (812)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567777777777777777777543
No 392
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=45.79 E-value=8.3 Score=28.56 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=16.8
Q ss_pred ceEEEEecCCccccccCCccC
Q 040319 787 RREIFLRDASGFHHFLNGQCS 807 (812)
Q Consensus 787 ~r~i~~rd~~~~h~f~~g~cs 807 (812)
...|=+.|..-.|+|+||+-+
T Consensus 7 ~ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 7 KKSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEEBTTSEEEEEETTS-EE
T ss_pred heeEecCCCCEEEEEcCCcee
Confidence 356778999999999999854
No 393
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.40 E-value=2.7e+02 Score=26.19 Aligned_cols=89 Identities=8% Similarity=0.076 Sum_probs=53.3
Q ss_pred CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhC---------
Q 040319 398 DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTG--------- 468 (812)
Q Consensus 398 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--------- 468 (812)
+++ .+.|..+..+-++.-..+++-+.|-. .+=.+++-.|-+...+..++.+++.+-+..
T Consensus 104 dk~-~vPFceFAetV~k~~q~~e~dK~~LG-----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL 171 (233)
T PF14669_consen 104 DKP-GVPFCEFAETVCKDPQNDEVDKTLLG-----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGL 171 (233)
T ss_pred ccC-CCCHHHHHHHHhcCCccchhhhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 455 66676666666555444444333211 122355666777777888888887776532
Q ss_pred -----CCCchhHHHHHHHHhhhcCCHHHHHHHHcc
Q 040319 469 -----FSSDLGVANSMVSMYFKCCNMSNAIKAFNK 498 (812)
Q Consensus 469 -----~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 498 (812)
..+--.+-|.-...+.++|.+|.|..++++
T Consensus 172 ~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 172 TGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred cCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 123344556667777777777777777764
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.95 E-value=53 Score=25.60 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=19.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHH
Q 040319 517 HRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRK 562 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~ 562 (812)
..+.++|+..|+..++.-..|.. .++..++.|++. .|.+.+.++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e--~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME--WGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 33445555555555443222221 334444444444 444444443
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.64 E-value=3.4e+02 Score=27.18 Aligned_cols=152 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred HcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHh----CCCCchhHHHHHHHHHHhcCC
Q 040319 177 VNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRI----GLGANLSVNNALIGFYTKCGR 252 (812)
Q Consensus 177 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~ 252 (812)
++++++++|++++..- ...+.+.++...|-++--.+++. +.+.+......++..+...+.
T Consensus 1 v~~kky~eAidLL~~G----------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~ 64 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSG----------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPP 64 (260)
T ss_dssp HHTT-HHHHHHHHHHH----------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T
T ss_pred CccccHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q ss_pred hH-HHHHHHhcC---------CCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 040319 253 VK-DVVALLERM---------PVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLF 322 (812)
Q Consensus 253 ~~-~A~~l~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~ 322 (812)
-+ +-.++.+++ +.-|......+...|.+.|++.+|..-|-.-.+++...+..++.-....|...++--..
T Consensus 65 ~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi 144 (260)
T PF04190_consen 65 EEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFI 144 (260)
T ss_dssp T-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHH
T ss_pred CcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHH
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 040319 323 VKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYR 394 (812)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 394 (812)
.+++-. |.-.+++..|...|+.
T Consensus 145 ~RaVL~--------------------------------------------------yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 145 ARAVLQ--------------------------------------------------YLCLGNLRDANELFDT 166 (260)
T ss_dssp HHHHHH--------------------------------------------------HHHTTBHHHHHHHHHH
T ss_pred HHHHHH--------------------------------------------------HHHhcCHHHHHHHHHH
No 396
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=44.51 E-value=5.5 Score=36.88 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=8.5
Q ss_pred ccccccchhh
Q 040319 768 NILTCGDCHS 777 (812)
Q Consensus 768 n~~~c~~ch~ 777 (812)
|+..|.-||.
T Consensus 180 nlk~Cn~Ch~ 189 (235)
T KOG4718|consen 180 NLKNCNLCHC 189 (235)
T ss_pred HHHHHhHhHH
Confidence 8888999995
No 397
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.16 E-value=2.1e+02 Score=31.02 Aligned_cols=352 Identities=11% Similarity=-0.019 Sum_probs=0.0
Q ss_pred hcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHH
Q 040319 194 RDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTE 273 (812)
Q Consensus 194 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 273 (812)
+..+..-...........--..+.++...+.+..+...|.....+.+|.-+..|.+.|....-.. ..+.+.
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~l---------l~el~a 79 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVL---------LKELEA 79 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHH---------HHHHHH
Q ss_pred HHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhH
Q 040319 274 IIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLS 353 (812)
Q Consensus 274 li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 353 (812)
|-......|+.-..+..-+. .+.+....-.|.....+..|+++...+... +.|=...+.......
T Consensus 80 L~~~~~~~~~~~~gld~~~~-----t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l--------- 144 (696)
T KOG2471|consen 80 LTADADAPGDVSSGLSLKQG-----TVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLL--------- 144 (696)
T ss_pred HHHhhccccchhcchhhhcc-----hHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHH---------
Q ss_pred HHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----CCceeeeHHHHHHHHHcCChhhHHHHHHHh
Q 040319 354 EQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-----RDDSIIWTSMICGYARSGKPEHAILLFHQS 428 (812)
Q Consensus 354 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 428 (812)
....|......++|+.+++-+. . +...+.-+.=.....+.+-+..|..-|
T Consensus 145 ---------------------~~~l~~~t~q~e~al~~l~vL~-~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~--- 199 (696)
T KOG2471|consen 145 ---------------------SDLLAAETSQCEEALDYLNVLA-EIEAEKRMKLVGNHIPANNLLKTLSPSAAERSF--- 199 (696)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccccccccchhhhcccCCcchhcccc---
Q ss_pred cccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-------
Q 040319 429 QSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS------- 501 (812)
Q Consensus 429 ~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------- 501 (812)
.--.|-...-..-+.++....++..++.-...+....- .+....-.--..+.-.|++.+|.+++....-
T Consensus 200 ---~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~-~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~ 275 (696)
T KOG2471|consen 200 ---STADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ-DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT 275 (696)
T ss_pred ---hhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC-CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc
Q ss_pred -----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC
Q 040319 502 -----HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT 576 (812)
Q Consensus 502 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 576 (812)
..-..||.|...+.+.|.+..+..+|.+.++ ..|++ ...--.....|..... ..
T Consensus 276 ~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~--------------N~c~q--L~~g~~~~~~~tls~n-----ks 334 (696)
T KOG2471|consen 276 ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR--------------NSCSQ--LRNGLKPAKTFTLSQN-----KS 334 (696)
T ss_pred ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH--------------HHHHH--HhccCCCCcceehhcc-----cc
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSC 619 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 619 (812)
.+..-...-.|...|+.-.|.+-|.+.. +..++..|.-|..+|
T Consensus 335 ~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 335 MEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred hhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.86 E-value=66 Score=27.07 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888888888888888888888776
No 399
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.35 E-value=1.7e+02 Score=28.84 Aligned_cols=162 Identities=12% Similarity=0.088 Sum_probs=82.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhh
Q 040319 510 LIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGY 589 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~ 589 (812)
++..+-+.|+++++...++++...+...+..--+.+..||-.. .|....+++.+..+.....-..+ .....++.-|-+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~-i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNV-IGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc-cccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 4556677888999999999998876555554444444454221 34455566666665542222211 222223222211
Q ss_pred c------CChHHHHHHHHhCCC----CCCHHHH-HHHHH-HHH----------hcCCHHHHHHHHHHHHc-----cCCCC
Q 040319 590 W------GFLEEAEETINNMPF----QPKVSVW-RALLD-SCR----------IRLNTTIGKRVAKHILA-----MEPQD 642 (812)
Q Consensus 590 ~------g~~~~A~~~~~~m~~----~p~~~~~-~~ll~-~~~----------~~~~~~~a~~~~~~~~~-----~~p~~ 642 (812)
. ..-.+.+.++++-.+ .+...++ .-+-+ .|+ +..-.+.|..+++++++ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 1 112455566665331 1222222 11111 111 11124677777777765 56776
Q ss_pred CchHHHHHh----hhhhCCCcchHHHHHHHHHhCC
Q 040319 643 PATYILVSN----LYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 643 ~~~~~~l~~----~y~~~g~~~~a~~~~~~m~~~g 673 (812)
|...-...| .|--.|+.++|.++-+..-+..
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 654333222 3566899999999888775543
No 400
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.96 E-value=92 Score=30.31 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=60.2
Q ss_pred HHHhhcCChHHHHHHHHhC---------CCCCCHHHHHHH--------HHH---HHhcCCHHHHHHHHHHHHccCCCCCc
Q 040319 585 SVLGYWGFLEEAEETINNM---------PFQPKVSVWRAL--------LDS---CRIRLNTTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m---------~~~p~~~~~~~l--------l~~---~~~~~~~~~a~~~~~~~~~~~p~~~~ 644 (812)
+-+.+.|++.||..-+++. .-+|...-|.-| ++- +.+.|++-+++.-...++..+|.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3445566666666555442 135554444332 222 33568888888889999999999999
Q ss_pred hHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 645 TYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 645 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|+.-+...+..=+.++|.+-+.+..+
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 999999988888777788877776643
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.58 E-value=66 Score=25.67 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=16.4
Q ss_pred hcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCC
Q 040319 249 KCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGY 283 (812)
Q Consensus 249 ~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~ 283 (812)
..|+.+.|.++++.++ +....+..++.++-+.|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 3455555555554444 444444444444444443
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.98 E-value=1.3e+02 Score=25.32 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLE 327 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 327 (812)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4689999999999999999999999887
No 403
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.59 E-value=6.2e+02 Score=29.12 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHHccC---CCCCc-hH-----HHHHhhhhhCCCcchHHHHHHHHH
Q 040319 622 RLNTTIGKRVAKHILAME---PQDPA-TY-----ILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 622 ~~~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.|++.+........+.+- |+... .+ ..+.+.|...|+.++|.+.+.+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 577776655555555443 32222 22 255667888899999998887753
No 404
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=40.04 E-value=71 Score=27.96 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=47.4
Q ss_pred EEEECCEEEEEeeCC-CCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCC
Q 040319 682 WIIHQNKVHSFYVRD-KSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAG 760 (812)
Q Consensus 682 ~~~~~~~~~~f~~~~-~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~ 760 (812)
|+.-.+..-.|..|| ..+|++.++-..|++|.+++.... -.+.--|++ +++.||-.||+.+.|
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~----v~~akVDiD----------~~~~LA~~fgV~siP-- 93 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT----WQVAIADLE----------QSEAIGDRFGVFRFP-- 93 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc----eEEEEEECC----------CCHHHHHHcCCccCC--
Confidence 443344455789998 688999999888999988773110 123333444 357889999999988
Q ss_pred CcEEEEccc
Q 040319 761 QPVRIVKNI 769 (812)
Q Consensus 761 ~~~~~~~n~ 769 (812)
++-++||=
T Consensus 94 -TLl~FkdG 101 (132)
T PRK11509 94 -ATLVFTGG 101 (132)
T ss_pred -EEEEEECC
Confidence 45555553
No 405
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.34 E-value=96 Score=21.51 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=21.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040319 75 AKLGREEEAIELFFRMRSEGIVPNEHSFVAILT 107 (812)
Q Consensus 75 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 107 (812)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666667777777777777666666666554
No 406
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=38.13 E-value=19 Score=19.51 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=8.3
Q ss_pred cchhhHHHHhhh
Q 040319 773 GDCHSFLKYVSV 784 (812)
Q Consensus 773 ~~ch~~~k~~s~ 784 (812)
..-|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 345888888773
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.04 E-value=4.3e+02 Score=26.53 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=21.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 513 GHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
-..+.+++++|+..+.+.+..|+..|..+
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 34456788888888888888887776544
No 408
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.60 E-value=2.1e+02 Score=23.10 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchHHHHHhhhhhCCCc-chHHHHHHHH
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ--DPATYILVSNLYSSSGRW-HNSELVREDM 669 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~-~~a~~~~~~m 669 (812)
|......+...+...|+.+.|...+-.+++.+|+ +...-..|..++...|.- .-+.+.|++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4556666777788888888888888888877765 356667777777777763 3556666655
No 409
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.47 E-value=2.6e+02 Score=23.47 Aligned_cols=75 Identities=9% Similarity=-0.117 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHh
Q 040319 114 ELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDM 192 (812)
Q Consensus 114 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 192 (812)
..++|..|.+.+...+- ....+.-..+..+.+.| ++..|...=...+.||...|-+|-. .+.|-.+++...+..+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG-~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRG-DYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT--HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhH-HHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 45566666666665543 23333334445566777 8888865555666788888877655 3667777777777766
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.39 E-value=98 Score=29.26 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 605 FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 605 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
..|++.++..++.++...|+.++|++..+++..+-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 467777777777777777777777777777777777
No 411
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.15 E-value=43 Score=29.15 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=23.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040319 76 KLGREEEAIELFFRMRSEGIVPNEHSFVAILTAC 109 (812)
Q Consensus 76 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 109 (812)
..|.-.+|..+|.+|+.+|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44566678888999998888876 466666543
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.80 E-value=1.4e+02 Score=25.95 Aligned_cols=42 Identities=7% Similarity=0.140 Sum_probs=32.2
Q ss_pred HHHHHHHHHHc--cCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 627 IGKRVAKHILA--MEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 627 ~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
.+..+++.+.. +.-.-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66667777765 4556677889999999999999999998864
No 413
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.45 E-value=9e+02 Score=29.48 Aligned_cols=93 Identities=11% Similarity=-0.032 Sum_probs=45.1
Q ss_pred CchhHHHHHHHHhhhcCCHHHHH-HHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAI-KAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAY 549 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~-~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 549 (812)
+|..+-.+.+..+++.|..+.+. .+...+.++|...-...+.++...+. +++...+..+.+ .||...=...+.++
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL 862 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLAL 862 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 45555566666666666554432 23333444554444445555555543 345555555543 34444444444455
Q ss_pred cCCCCchHHHHHHHHHHhhh
Q 040319 550 RYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 550 ~~~~~g~~~~a~~~~~~m~~ 569 (812)
.. .+.-..+...+....+
T Consensus 863 ~~--~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 863 TR--WPGDPAARDALTTALT 880 (897)
T ss_pred hc--cCCCHHHHHHHHHHHh
Confidence 44 3223345555554444
No 414
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=35.28 E-value=2e+02 Score=25.32 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
|.-+|.+.++++++.+..+.+++.+|+|..+.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 44468889999999999999999999865543
No 415
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.04 E-value=1.5e+02 Score=23.61 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 040319 17 AKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREE 81 (812)
Q Consensus 17 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 81 (812)
+..+.+.+++.|+ .+....-...+...+.+.|.++++-+|.+...+|.++..++-..|...
T Consensus 18 ~~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 18 PKYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3457777777663 333333344445566778888888888888888888888877766543
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.72 E-value=2.8e+02 Score=28.25 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=15.5
Q ss_pred HHHHHHHHHHccCCCCCchHHH
Q 040319 627 IGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
-|.++..++.+.+|.-|.+..-
T Consensus 380 ~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHHH
Confidence 4666778888999986655443
No 417
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=34.62 E-value=6.4e+02 Score=30.42 Aligned_cols=88 Identities=13% Similarity=0.079 Sum_probs=55.0
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHccCCCCCchHHHH
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMPFQP-KVSVWRALLDSCRIRLN-------TTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+-|-++...-.+.+-++...++.+.-.+.+ ++.-.++|++++...+. -..=.-+.+.+++++|-||.+-..|
T Consensus 741 ~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl 820 (863)
T TIGR02414 741 DKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARL 820 (863)
T ss_pred HHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHH
Confidence 344444433223333444444433322333 45567889988753332 2223446888999999999999999
Q ss_pred HhhhhhCCCcchHHHH
Q 040319 650 SNLYSSSGRWHNSELV 665 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~ 665 (812)
+..+.+=.++++..+-
T Consensus 821 ~~~~~~w~~~~~~r~~ 836 (863)
T TIGR02414 821 LEPLTRWRKLDPKRQE 836 (863)
T ss_pred HHHhhhhhcCCHHHHH
Confidence 9999999999887663
No 418
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.62 E-value=1.4e+02 Score=31.97 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=57.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhc---C
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYW---G 591 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~---g 591 (812)
...|++++|+..|+.++.. ..+..... ....+++.++....++ | ....-+.+-.|. .
T Consensus 215 ~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~--~~E~~e~~eli~icrE-Y-------ilgl~iEl~Rr~l~~~ 274 (422)
T PF06957_consen 215 FTAGKFEEAIEIFRSILHS----------IPLLVVES--REEEDEAKELIEICRE-Y-------ILGLSIELERRELPKD 274 (422)
T ss_dssp HHTT-HHHHHHHHHHHHHH----------HHC--BSS--CHHHHHHHHHHHHHHH-H-------HHHHHHHHHHCTS-TT
T ss_pred HhcCCHHHHHHHHHHHHHH----------hheeeecC--HHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHhcccc
Confidence 4578888888888887651 12222222 3445566655554443 1 111112221111 1
Q ss_pred Ch---HHHHHH---HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 592 FL---EEAEET---INNMPFQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 592 ~~---~~A~~~---~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
.. .+..++ |....+.|. ..+.++-++.+.+++|+.-|-..+++++++.|.
T Consensus 275 ~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 275 PVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp THHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred chhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 12 222333 223335553 457777788889999999999999999999986
No 419
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.54 E-value=8.8e+02 Score=29.09 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHh
Q 040319 168 SWNTVISSVVNEFEYEKAFELFRDM 192 (812)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~l~~~m 192 (812)
-|..|+.-|...|+.++|++++.+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l 530 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDL 530 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHH
Confidence 5888999999999999999999887
No 420
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.47 E-value=2.2e+02 Score=26.53 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=23.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
....|.+.|.+++|++++++.++ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 44568999999999999999998 7765443
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.46 E-value=42 Score=29.20 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAY 549 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 549 (812)
...|.-.+|-.+|++|++.|-.||. +..|+.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456777888999999999999985 45555543
No 422
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.32 E-value=6.3e+02 Score=27.34 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=28.8
Q ss_pred chHHHHHHHHHc---CCChhHHHHHHHHhHhcCCCCCCcchHHHHHHH
Q 040319 167 VSWNTVISSVVN---EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTA 211 (812)
Q Consensus 167 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~ 211 (812)
..+..+++++.+ .++++.|+..+..| ...|..|....-..+..+
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~-l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARM-LEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence 345555666655 47888899888888 677777765444444444
No 423
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.23 E-value=8.5e+02 Score=28.85 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=42.5
Q ss_pred HHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHH
Q 040319 245 GFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVK 324 (812)
Q Consensus 245 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 324 (812)
..|...|+++.|.++-+.-+..-...+..-...|.+.+++..|-+++-++ ..++..+.--+....+.+ ++..|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Confidence 34556677777776444331111122333344556666677777776666 334444444444454444 4444333
Q ss_pred HHHcCCCCCHhHH
Q 040319 325 LLEEGLVLTEFTL 337 (812)
Q Consensus 325 m~~~g~~p~~~t~ 337 (812)
=+-..+.|...+-
T Consensus 441 KKL~~lt~~dk~q 453 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQ 453 (911)
T ss_pred HHHhhCChHHHHH
Confidence 3333344444443
No 424
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=34.11 E-value=5.9e+02 Score=26.95 Aligned_cols=200 Identities=17% Similarity=0.179 Sum_probs=120.5
Q ss_pred CCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHH--HHHHHHCCCCCCHHHHHHHH
Q 040319 469 FSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAV--WSSMEKASIKPDAITFVLII 546 (812)
Q Consensus 469 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l--~~~m~~~g~~pd~~t~~~ll 546 (812)
...+..+...+++.+...++|+.--.. +.....++|+...|++. .+-|.-..-.||..|-..++
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~--------------i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQ--------------IRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHH--------------HHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 344556666777777777777654332 12223467777777653 23333333556666666665
Q ss_pred HHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC------CHHH--HHHHHHH
Q 040319 547 SAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQP------KVSV--WRALLDS 618 (812)
Q Consensus 547 ~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p------~~~~--~~~ll~~ 618 (812)
.-+.. +.++.-+. +.. ....-..+...+-..|++++|.+++.+.+++. ...+ ..--+..
T Consensus 114 ~tLr~-----VtegkIyv-EvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrK 180 (439)
T KOG1498|consen 114 ETLRT-----VTEGKIYV-EVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRL 180 (439)
T ss_pred HHHHH-----hhcCceEE-eeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH
Confidence 54322 22221111 000 01122345677788999999999999887321 1111 1112456
Q ss_pred HHhcCCHHHHHHHHHHHHcc---CCC----CCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEE
Q 040319 619 CRIRLNTTIGKRVAKHILAM---EPQ----DPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHS 691 (812)
Q Consensus 619 ~~~~~~~~~a~~~~~~~~~~---~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~ 691 (812)
|...+|+-.|..+.+++... +|+ --.+|..+..++...+.+=++.+.++..-+.|-.+...--|+++-..+-.
T Consensus 181 OG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~ 260 (439)
T KOG1498|consen 181 CLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVS 260 (439)
T ss_pred HHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhee
Confidence 88899999998888877542 232 13468899999999999999999999987776665544457776555556
Q ss_pred EeeC
Q 040319 692 FYVR 695 (812)
Q Consensus 692 f~~~ 695 (812)
|..-
T Consensus 261 f~~L 264 (439)
T KOG1498|consen 261 FCVL 264 (439)
T ss_pred EEee
Confidence 6553
No 425
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.99 E-value=1.1e+02 Score=29.01 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=24.5
Q ss_pred ccCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 573 IEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 573 ~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
..|++..|..++.++...|+.++|.+..+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56777778888888888888888877777764
No 426
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.98 E-value=2.9e+02 Score=32.41 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=40.7
Q ss_pred ChHHHHH---HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 040319 592 FLEEAEE---TINNMPFQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 592 ~~~~A~~---~~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 644 (812)
..+++.+ .|...+++|- ..+..+-++.+.+++|+..|...+.+++++.|..+.
T Consensus 1062 ~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1062 NLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred hHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 3445533 3556667773 557778889999999999999999999999997554
No 427
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.57 E-value=5e+02 Score=27.59 Aligned_cols=30 Identities=13% Similarity=-0.084 Sum_probs=22.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 040319 513 GHLLHRQGDEALAVWSSMEKASIKPDAITF 542 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 542 (812)
.+.+.+++..|.++|+++......|+..++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~ 168 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTF 168 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhH
Confidence 455678899999999999887665555443
No 428
>PRK14015 pepN aminopeptidase N; Provisional
Probab=33.48 E-value=6.4e+02 Score=30.51 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=55.9
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHccCCCCCchHHHH
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMPFQP-KVSVWRALLDSCRIRLNT-------TIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+-|-++...-.+.+-++....+.+.-.+.+ ++.-.++|++++...+-. ..=.-+.+.++++++-||..-..|
T Consensus 751 ~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl 830 (875)
T PRK14015 751 DKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARL 830 (875)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHH
Confidence 444444433333333444444433322433 455678899987543322 223446888999999999999999
Q ss_pred HhhhhhCCCcchHHHH
Q 040319 650 SNLYSSSGRWHNSELV 665 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~ 665 (812)
+..+.+-.++++..+.
T Consensus 831 ~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 831 ATPLIRWRRYDPKRQA 846 (875)
T ss_pred HHHhhhhhccCHHHHH
Confidence 9999999999877664
No 429
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=33.12 E-value=69 Score=25.01 Aligned_cols=46 Identities=11% Similarity=0.002 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEET 599 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~ 599 (812)
....++|+..+....++..-.|+ -.+..+++.+|+..|++++++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788877777653322232 23566777777777777777665
No 430
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.07 E-value=73 Score=36.85 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=55.0
Q ss_pred HHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHH
Q 040319 586 VLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELV 665 (812)
Q Consensus 586 ~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 665 (812)
+...+|+++.|++.-++.. |..+|..|......+||.+.|+..+++... +..|+-+|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHH
Confidence 3457899999998888763 677899999999999999999999887543 44566677777776655554
Q ss_pred HHHH
Q 040319 666 REDM 669 (812)
Q Consensus 666 ~~~m 669 (812)
.+..
T Consensus 721 ~~ia 724 (1202)
T KOG0292|consen 721 MKIA 724 (1202)
T ss_pred HHHH
Confidence 4433
No 431
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.97 E-value=2.6e+02 Score=22.45 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=26.2
Q ss_pred hcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHH
Q 040319 146 KFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKA 185 (812)
Q Consensus 146 ~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 185 (812)
..| +.+.|+++++.++ +....+..++.++-..|.-+-|
T Consensus 48 ~~g-~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHG-NESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccC-cHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 445 7777777777777 7777777777777766654444
No 432
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.95 E-value=2.4e+02 Score=32.34 Aligned_cols=27 Identities=15% Similarity=-0.004 Sum_probs=21.5
Q ss_pred cccchhhHHHHhhhhcceEEEEecCCc
Q 040319 771 TCGDCHSFLKYVSVVTRREIFLRDASG 797 (812)
Q Consensus 771 ~c~~ch~~~k~~s~~~~r~i~~rd~~~ 797 (812)
-|..=|++.--.|+|.|-.+--||.++
T Consensus 490 ~~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 490 KLKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hhcCceeeeeehhceecccccccccce
Confidence 466777777778888888888888776
No 433
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.55 E-value=4.2e+02 Score=25.99 Aligned_cols=79 Identities=9% Similarity=0.060 Sum_probs=50.8
Q ss_pred hcCCHHHHHHHHccCC--CCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcCCCCchHHHH
Q 040319 485 KCCNMSNAIKAFNKMP--SHDI-VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS-AYRYTNLNLVDSC 560 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~g~~~~a 560 (812)
....+++|..-+.+.. .|++ .-|+.=+..+.+..+++.+.+=-++.++ +.||.+--...+. +... ...+++|
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~--s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQ--SKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHh--hccccHH
Confidence 3345555555554433 3666 4455667778888888888888788777 8888865444444 3444 5667777
Q ss_pred HHHHHHh
Q 040319 561 RKLFLSM 567 (812)
Q Consensus 561 ~~~~~~m 567 (812)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7777655
No 434
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=32.54 E-value=6.7e+02 Score=27.11 Aligned_cols=50 Identities=14% Similarity=-0.082 Sum_probs=19.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCC
Q 040319 234 GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGY 283 (812)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~ 283 (812)
.++..+-..-+..+.+.+..+..-.+..-....|...-..-+.++...|.
T Consensus 158 d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 158 HEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 34444444444555444443332222222223333333333444444444
No 435
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.23 E-value=1.9e+02 Score=25.05 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=42.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHH
Q 040319 523 ALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVS 585 (812)
Q Consensus 523 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 585 (812)
..+-+.......+.|+....-..|.||.+ .+++..|.++|+.++.+ ..+....|-.+++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RR--vNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRR--VNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHH--hccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 33445556666788999889999999999 99999999999988753 3333335665553
No 436
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.56 E-value=83 Score=31.78 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 040319 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVN 342 (812)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (812)
|+..|..-.+.|++++|+.++++..+.|+.--..||...++
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 67889999999999999999999999998766666655443
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.45 E-value=1.6e+02 Score=20.36 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=23.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 040319 309 YCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVN 342 (812)
Q Consensus 309 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (812)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666777777777777777766666665554
No 438
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.21 E-value=2e+02 Score=24.81 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=33.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 600 INNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 600 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
+-.+.+-|++.+..+-|.||++-+|+..|.+++|-+...-
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3344578999999999999999999999999998876443
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.15 E-value=91 Score=31.52 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=36.3
Q ss_pred CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040319 502 HDI-VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLII 546 (812)
Q Consensus 502 ~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 546 (812)
||. .-||..|..-.+.||.++|+++++|..+.|+.--..||...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 444 346789999999999999999999999999877667776554
No 440
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=31.07 E-value=2.7e+02 Score=31.77 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=26.3
Q ss_pred HHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHH
Q 040319 289 EIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVM 361 (812)
Q Consensus 289 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 361 (812)
.++.+.+-++...-.-++..|.+.|..+.|..+.+.+-..-. ...-|...+.-+.+.++......+-..+.
T Consensus 395 ~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 395 ELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555444444445556666666666666666665544321 12345555555555565555554444443
No 441
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.93 E-value=1.1e+02 Score=24.93 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=33.1
Q ss_pred HhcCCHHHHHHHHHHHHccCCCC---------CchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQD---------PATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
...||+..|...+.+.++..... ..+...++.++...|++++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45566666666666665542221 1234567888889999999988887763
No 442
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.81 E-value=1.5e+02 Score=26.41 Aligned_cols=47 Identities=9% Similarity=0.124 Sum_probs=35.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 616 LDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 616 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
.......|++.-|.++.+.++..+|+|..+-...+++|.+.|.-.+.
T Consensus 77 A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 77 AQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 34456789999999999999999999999999999888777754433
No 443
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=29.12 E-value=89 Score=23.10 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=17.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
..|.||.+.|++++|.++.+++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467888888888888888877765
No 444
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=28.91 E-value=25 Score=21.85 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=8.3
Q ss_pred HHHHHHhhcC
Q 040319 747 KLAATYGLLT 756 (812)
Q Consensus 747 ~la~~~~~~~ 756 (812)
-||.|||+|+
T Consensus 11 lLAcAFgiin 20 (37)
T COG4890 11 LLACAFGIIN 20 (37)
T ss_pred HHHHHHHHHH
Confidence 5889999886
No 445
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.74 E-value=2.8e+02 Score=23.84 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHH----HH
Q 040319 236 NLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALL----AG 308 (812)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li----~~ 308 (812)
|...+..|-.++.+.|++++++. ..+.|+..|++--+ ..-..|-+.+ .+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~------------------------sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~A 109 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQ------------------------SADRALRYFNRRGELHQDEGKLWIAAVFSRAVA 109 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHH------------------------HHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHH------------------------HHHHHHHHHhhccccccccchhHHHHHHHHHHH
Confidence 55667778888889999888877 23455666664433 2233454443 35
Q ss_pred HHhCCChHHHHHHHHHH
Q 040319 309 YCKNGKAMEALGLFVKL 325 (812)
Q Consensus 309 ~~~~g~~~~A~~l~~~m 325 (812)
+-..|+.++|+..|+..
T Consensus 110 l~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 110 LEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHH
Confidence 56678899988888754
No 446
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=28.70 E-value=3.8e+02 Score=26.94 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=13.6
Q ss_pred HHHHHHcCChhhHHHHHHH
Q 040319 409 ICGYARSGKPEHAILLFHQ 427 (812)
Q Consensus 409 i~~~~~~g~~~~A~~~~~~ 427 (812)
|.+++..+++.+++...-+
T Consensus 90 IQALAEmnrWreVLsWvlq 108 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQ 108 (309)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 6778888888887765443
No 447
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.54 E-value=1.4e+02 Score=25.05 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=12.3
Q ss_pred HHHHHHHhhCChhHHHHHhccCCCC
Q 040319 273 EIIIAYMEFGYVDLAVEIFDKMPEK 297 (812)
Q Consensus 273 ~li~~~~~~g~~~~A~~~f~~m~~~ 297 (812)
.++..|...++.++|..-+.++..|
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 3445555555555555555555433
No 448
>PRK11619 lytic murein transglycosylase; Provisional
Probab=28.21 E-value=9.9e+02 Score=27.72 Aligned_cols=263 Identities=11% Similarity=0.018 Sum_probs=129.9
Q ss_pred HHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChH
Q 040319 140 LMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLM 219 (812)
Q Consensus 140 li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~ 219 (812)
-+..+++.+ +.....+ |..-+..+...--....+....|+.++|....+.+ -..|.. ..+
T Consensus 105 ~l~~La~~~-~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l-W~~g~~-----------------~p~ 164 (644)
T PRK11619 105 FVNELARRE-DWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKEL-WLTGKS-----------------LPN 164 (644)
T ss_pred HHHHHHHcc-CHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-hccCCC-----------------CCh
Confidence 344455556 7777777 44323345555566777888889888887777776 333321 123
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCc
Q 040319 220 EGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNS 299 (812)
Q Consensus 220 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~ 299 (812)
.+..+++...+.|.-.+..++.- +......|+...|..+...+..........++..+.+ ...+..++...+ ++.
T Consensus 165 ~cd~l~~~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~ 239 (644)
T PRK11619 165 ACDKLFSVWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTD 239 (644)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CCh
Confidence 34455555555554444444444 4445566778888777776632222222233333322 233333333321 222
Q ss_pred ccHHHHHHHHH--hCCChHHHHHHHHHHHHcC-CCCCHhH--HHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHH
Q 040319 300 VSYNALLAGYC--KNGKAMEALGLFVKLLEEG-LVLTEFT--LTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAA 374 (812)
Q Consensus 300 ~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g-~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 374 (812)
..-..++.++. ...+.+.|..++....... ..+.... ...+............+...+...... ..+..+...
T Consensus 240 ~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~ 317 (644)
T PRK11619 240 FTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLER 317 (644)
T ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHH
Confidence 11121222222 2345678888888764433 2222221 111111111111022222222222111 123344444
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHH-HHHHHHHcCChhhHHHHHHHhc
Q 040319 375 LLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTS-MICGYARSGKPEHAILLFHQSQ 429 (812)
Q Consensus 375 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~ 429 (812)
-+..-.+.++.+.+...|..|+....+..-|-- +..++...|+.++|...|.+..
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 455555788888888888888732111222322 3445566788888888888764
No 449
>PF15469 Sec5: Exocyst complex component Sec5
Probab=28.13 E-value=4.9e+02 Score=24.18 Aligned_cols=25 Identities=4% Similarity=0.151 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHH
Q 040319 623 LNTTIGKRVAKHILAMEPQDPATYI 647 (812)
Q Consensus 623 ~~~~~a~~~~~~~~~~~p~~~~~~~ 647 (812)
...+....+.+.+++++|++..++.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 3455555666666666665433333
No 450
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.80 E-value=1.7e+02 Score=29.49 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=33.4
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSME 531 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 531 (812)
....|.++|.+.+|.++-+.... -+...|-.++..|+..|+--.|.+-++++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34556667777777766665554 344566667777777777666666666554
No 451
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.77 E-value=4e+02 Score=23.06 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHhhhcCCHHHHHHHHcc
Q 040319 456 MGKQIHSYALKTGFSS-DLGVANSMVSMYFKCCNMSNAIKAFNK 498 (812)
Q Consensus 456 ~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~ 498 (812)
.+..++..|...|+.. -...|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777888888777643 456777788888888888888888753
No 452
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=27.70 E-value=8.1e+02 Score=26.51 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=13.7
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCC
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPS 501 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~ 501 (812)
-...+.+.++.|+...+--+.+.|.+
T Consensus 255 r~~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 255 RREALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHhcC
Confidence 33445555555665555555555543
No 453
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.01 E-value=2.6e+02 Score=21.48 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=38.7
Q ss_pred CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040319 488 NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLF 564 (812)
Q Consensus 488 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~ 564 (812)
+.+.|..++..+.. +.+..||++...+.+|... -+.+.||..+ .|.+..|.+-|
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~-----------iskl~pd~~~------------LG~L~~aL~ey 68 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQ-----------ISKLQPDENI------------LGELAAALEEY 68 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccch-----------hhhcCccHHH------------HHHHHHHHHHH
Confidence 45667777766664 6778889888877776532 2237788765 45566666667
Q ss_pred HHhhh
Q 040319 565 LSMKT 569 (812)
Q Consensus 565 ~~m~~ 569 (812)
.+|..
T Consensus 69 ~~~~g 73 (82)
T PF11123_consen 69 KKMVG 73 (82)
T ss_pred HHHcC
Confidence 66654
No 454
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.90 E-value=3.4e+02 Score=22.74 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=10.9
Q ss_pred HHHHHHhhCChhHHHHHhccCCC
Q 040319 274 IIIAYMEFGYVDLAVEIFDKMPE 296 (812)
Q Consensus 274 li~~~~~~g~~~~A~~~f~~m~~ 296 (812)
++..|...++.++|..-+.++..
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~~ 30 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELKL 30 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhCC
Confidence 34444444555555555444443
No 455
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=26.47 E-value=20 Score=29.08 Aligned_cols=12 Identities=42% Similarity=0.994 Sum_probs=9.5
Q ss_pred cccCCccCCCCC
Q 040319 800 HFLNGQCSCKDY 811 (812)
Q Consensus 800 ~f~~g~csc~~~ 811 (812)
....|.|||.||
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 357789999886
No 456
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=26.12 E-value=25 Score=25.14 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=8.7
Q ss_pred cccccccchhhH
Q 040319 767 KNILTCGDCHSF 778 (812)
Q Consensus 767 ~n~~~c~~ch~~ 778 (812)
--.-+|+|||+-
T Consensus 18 ~miYiCgdC~~e 29 (62)
T KOG3507|consen 18 TMIYICGDCGQE 29 (62)
T ss_pred cEEEEecccccc
Confidence 345699999953
No 457
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.04 E-value=1.5e+02 Score=22.25 Aligned_cols=50 Identities=16% Similarity=0.071 Sum_probs=35.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 040319 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIR 111 (812)
Q Consensus 61 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 111 (812)
.|....++.++..+++..-.++++..+.+....|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 35566778888888888888888888888888875 566677666666655
No 458
>PF14376 Haem_bd: Haem-binding domain
Probab=25.77 E-value=22 Score=31.42 Aligned_cols=9 Identities=56% Similarity=1.047 Sum_probs=7.3
Q ss_pred cccccchhh
Q 040319 769 ILTCGDCHS 777 (812)
Q Consensus 769 ~~~c~~ch~ 777 (812)
-+-|.||||
T Consensus 41 ~~~CydCHS 49 (137)
T PF14376_consen 41 KNSCYDCHS 49 (137)
T ss_pred HccccccCC
Confidence 358999996
No 459
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=25.31 E-value=47 Score=26.00 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=26.3
Q ss_pred cCCHHHHHHHHHHHHcc------CCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 622 RLNTTIGKRVAKHILAM------EPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 622 ~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.|+.+.|...|++.++. -|. + .....-.|++|.+++++|..
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~-~--------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPV-P--------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCC-C--------cccccHHHHHHHHHHHHHHH
Confidence 36666666666666542 121 0 34555679999999999964
No 460
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.27 E-value=1e+02 Score=22.80 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 040319 303 NALLAGYCKNGKAMEALGLFVKLLE 327 (812)
Q Consensus 303 ~~li~~~~~~g~~~~A~~l~~~m~~ 327 (812)
-.+|.+|.+.|++++|.++..++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567888888888888888887765
No 461
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.10 E-value=2.5e+02 Score=22.71 Aligned_cols=58 Identities=10% Similarity=0.057 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040319 17 AKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLG 78 (812)
Q Consensus 17 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 78 (812)
...+.+.+++.|+ .+....-...+..-+.+.+.++++.++.+...+|..+..++-..+
T Consensus 22 ~~~v~~~L~~~gv----lt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 22 LDELLIHLLQKDI----LTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred HHHHHHHHHHcCC----CCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 3345666666553 222223333344455667777777777777777777777765544
No 462
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=25.05 E-value=4.9e+02 Score=26.03 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=45.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 617 DSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 617 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+++...+..+.|.+..++.+.++|+++....--+-+|+..|...-|.+-....
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 45677889999999999999999999888888899999999999888877664
No 463
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.94 E-value=5.9e+02 Score=24.02 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=52.5
Q ss_pred HhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhc-----
Q 040319 290 IFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFG----- 364 (812)
Q Consensus 290 ~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g----- 364 (812)
+.+...++..+.|-.....-++.-+.+++-+.|-- ..=.+++-.|-+..+..+|+.+++.+.+..
T Consensus 98 Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~ 167 (233)
T PF14669_consen 98 LTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTS 167 (233)
T ss_pred HHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444444555566666655555554444333211 112344455556666666666666554431
Q ss_pred ---------CCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 040319 365 ---------LGSNDCIEAALLDMLTRCGRMADAEKMFYR 394 (812)
Q Consensus 365 ---------~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 394 (812)
..+--.+.|.-...+.++|.++-|..++++
T Consensus 168 LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 168 LKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred ccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 234445667777777888888888877764
No 464
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=24.63 E-value=21 Score=27.29 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.0
Q ss_pred cccccccchhhHHH
Q 040319 767 KNILTCGDCHSFLK 780 (812)
Q Consensus 767 ~n~~~c~~ch~~~k 780 (812)
|--|||.|||+...
T Consensus 18 kldrVC~DCyNl~R 31 (73)
T PF01147_consen 18 KLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 45689999998753
No 465
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=23.66 E-value=6.9e+02 Score=25.19 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=28.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 71 ISGLAKLGREEEAIELFFRMRSE--GIVPNEHSFVAILTACIRLLELELGFQIHALIVK 127 (812)
Q Consensus 71 i~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 127 (812)
|.++++.++|.+++...-+--+. .++|..- -.-|-.|.+.+.+....++-..-..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 67788888888877654443322 1232222 2222234455555555554444443
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.48 E-value=3.5e+02 Score=27.58 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=28.0
Q ss_pred HHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040319 277 AYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLE 327 (812)
Q Consensus 277 ~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 327 (812)
-+.+.+++.+..+.+..+ ..+..-...+......|++.+|+++..+..+
T Consensus 107 ~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 107 LQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333334443333344433 2333344566677788888888888877765
No 467
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=23.42 E-value=1.1e+02 Score=24.40 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=12.6
Q ss_pred CChHHHHHHHhcCCCCcchhHHHHHHHHHh
Q 040319 251 GRVKDVVALLERMPVMDIITLTEIIIAYME 280 (812)
Q Consensus 251 g~~~~A~~l~~~~~~~~~~~~~~li~~~~~ 280 (812)
.+.+.|.++++.++.++..+|..+..++-.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~ 73 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRE 73 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344444444444444444444444333333
No 468
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=22.51 E-value=4.3e+02 Score=22.73 Aligned_cols=20 Identities=10% Similarity=-0.112 Sum_probs=11.5
Q ss_pred HhhhhhCCCcchHHHHHHHH
Q 040319 650 SNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m 669 (812)
+-.+...|+.+||...+++.
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 34556667777776666543
No 469
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=22.45 E-value=3.6e+02 Score=30.01 Aligned_cols=132 Identities=12% Similarity=0.055 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHH--HHHHHhh-cCChHHHHHHHHhCC-CCCC--
Q 040319 535 IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYAS--LVSVLGY-WGFLEEAEETINNMP-FQPK-- 608 (812)
Q Consensus 535 ~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~--li~~l~~-~g~~~~A~~~~~~m~-~~p~-- 608 (812)
--|+..|...++.-....-...-+-|-.+|..|.. |....|-. +..+|-| .|+...|...+...- .+|-
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~ 641 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQ 641 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhh
Confidence 45777776666654433113334556666766654 33333322 2344544 588888888777643 4442
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+....|.+...+.|.+-.|-..+.+.+.+....|-.+..++++|....+.+.|.+-++...+
T Consensus 642 ~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 642 DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 233445666667778888888889999988877888999999999999999999998877644
No 470
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.41 E-value=4.3e+02 Score=29.39 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=33.8
Q ss_pred HHHHHHHHccCChhhHHHHHhcCC--CCChhhH---HHHHHHHHhcCChhHHHHHHHHHHH
Q 040319 37 NPLISAYLKLGHVADAYKIFYGLS--SPNVVSF---TSLISGLAKLGREEEAIELFFRMRS 92 (812)
Q Consensus 37 ~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~ 92 (812)
..|+.-|.+.+.+++|..++..|. .-....| +.+...+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 468888999999999999998886 1122333 3344444444433344444454443
No 471
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.41 E-value=1.1e+03 Score=26.02 Aligned_cols=21 Identities=0% Similarity=-0.202 Sum_probs=10.2
Q ss_pred HHHHHHccCChhhHHHHHhcC
Q 040319 39 LISAYLKLGHVADAYKIFYGL 59 (812)
Q Consensus 39 li~~~~~~g~~~~A~~~f~~~ 59 (812)
.+...++.|+.+-...+++.-
T Consensus 38 ~L~~A~~~~~~~ivk~Ll~~g 58 (480)
T PHA03100 38 PLYLAKEARNIDVVKILLDNG 58 (480)
T ss_pred hhhhhhccCCHHHHHHHHHcC
Confidence 334444555555555555443
No 472
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.26 E-value=3.3e+02 Score=23.61 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHH
Q 040319 560 CRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETIN 601 (812)
Q Consensus 560 a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~ 601 (812)
..++|..|.. .+|--. ...|......+-..|++.+|.++++
T Consensus 82 p~~if~~L~~-~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYS-KGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHH-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555666654 444433 3445566666666677777766664
No 473
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.20 E-value=1.4e+02 Score=28.89 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=48.7
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
...++.+-+-+++.+++++-|+....+..++..--++|+++.|.+-+++..+...
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 3568889999999999999999999999999999999999999998888765443
No 474
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.85 E-value=3.5e+02 Score=23.51 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=28.8
Q ss_pred HHHHHHHHc--cCCCCCchHHHHHhhhhhCCCcchHHHHHH
Q 040319 629 KRVAKHILA--MEPQDPATYILVSNLYSSSGRWHNSELVRE 667 (812)
Q Consensus 629 ~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 667 (812)
..++..+.. +...-+..|...+..+-..|++.+|.++++
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555544 344556778888999999999999999876
No 475
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.84 E-value=41 Score=24.27 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=15.6
Q ss_pred CCcEEEEcccccccchhh--HHHHhhhhc
Q 040319 760 GQPVRIVKNILTCGDCHS--FLKYVSVVT 786 (812)
Q Consensus 760 ~~~~~~~~n~~~c~~ch~--~~k~~s~~~ 786 (812)
..|||-+ ||.+||+ ++|-+|++-
T Consensus 26 N~PIrty----mC~eC~~Rva~kt~~R~~ 50 (68)
T COG4896 26 NKPIRTY----MCPECEHRVAIKTISRVN 50 (68)
T ss_pred CCCceeE----echhhHhhhchhhHHHhc
Confidence 4566643 9999996 566677553
No 476
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=21.83 E-value=81 Score=31.78 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=53.0
Q ss_pred ccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 573 IEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLD-SCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 573 ~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
...|+..|...+.-..+.|.+.+.-.++.+.. ..| |+-.|-.-.. -+..++|++-++.++.+.+.++|++|..+...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 44566777766665566666666666666543 445 5556644222 25678999999999999999999988877654
Q ss_pred H
Q 040319 650 S 650 (812)
Q Consensus 650 ~ 650 (812)
.
T Consensus 183 f 183 (435)
T COG5191 183 F 183 (435)
T ss_pred H
Confidence 3
No 477
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.23 E-value=7e+02 Score=23.59 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=26.8
Q ss_pred HhhhcCCHHHHHHHHccCCC------CChhHHHHHHH-HHHhcCCh--HHHHHHHHHHHH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS------HDIVSWNGLIA-GHLLHRQG--DEALAVWSSMEK 532 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~-~~~~~g~~--~~A~~l~~~m~~ 532 (812)
.....|++++|..-++++.+ .-...|..+.. +++.++.- -+|.-++.-...
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 34455667777666665543 23345555554 56666553 345544444433
No 478
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.00 E-value=1.6e+03 Score=27.79 Aligned_cols=109 Identities=17% Similarity=0.090 Sum_probs=55.8
Q ss_pred HHHhhhcCCHHHHHHHHccCCC-------------------CC-------------hhHHHHHHHHHHhcCChHHHHHHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPS-------------------HD-------------IVSWNGLIAGHLLHRQGDEALAVW 527 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~-------------------~~-------------~~~~~~li~~~~~~g~~~~A~~l~ 527 (812)
.-+|..+|...+|...|.+... ++ ..-|-..+..+-+++..+.+.++-
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA 1006 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLA 1006 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3457778888888888776532 00 122344555666667777777766
Q ss_pred HHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 528 SSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 528 ~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
...++. +.||. .+++.+..-... .|.+-+|.+..-+-. ..........-++-.+..+|.++
T Consensus 1007 ~~AIe~-l~dd~ps~a~~~t~vFnhhld--lgh~~qAy~ai~~np---dserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1007 VKAIEN-LPDDNPSVALISTTVFNHHLD--LGHWFQAYKAILRNP---DSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHh-CCCcchhHHHHHHHHHHhhhc--hhhHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhccchH
Confidence 666663 33332 223333333333 555555544332111 01112334455666666666543
No 479
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.89 E-value=3.2e+02 Score=22.80 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=12.9
Q ss_pred HHHHHHHHcCChhhHHHHHHHhc
Q 040319 407 SMICGYARSGKPEHAILLFHQSQ 429 (812)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~m~ 429 (812)
.++..|...++.++|...+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34555666666666666666554
No 480
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.72 E-value=9.2e+02 Score=24.69 Aligned_cols=215 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred CHhHHHHHHHHhccch-hhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCC--HHHHHHHHhcC-CCCCCceeeeHHH
Q 040319 333 TEFTLTSVVNACGLIM-EAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGR--MADAEKMFYRW-PTDRDDSIIWTSM 408 (812)
Q Consensus 333 ~~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~--~~~A~~~f~~~-~~~~~~~~~~~~l 408 (812)
|...+..++..+.... ....-..++..+.. +++.|. +..+.++...+ + ..++...|..+
T Consensus 17 d~~~~~~l~~~L~~~~l~~~~R~~ll~D~~a----------------l~~~g~~~~~~~l~l~~~~~~-~E~~~~vw~~~ 79 (324)
T PF11838_consen 17 DEENWDALIKQLQSNHLSPLDRAQLLDDLFA----------------LARAGRLSYSDFLDLLEYLLP-NETDYVVWSTA 79 (324)
T ss_dssp CTTHHHHHHHHHHHHGS-HHHHHHHHHHHHH----------------HHHTTSS-HHHHHHHHGGG-G-T--SHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----------------HHHcCCCCHHHHHHHHHHhcc-CCCchHHHHHH
Q ss_pred HHHHHHcC------ChhhHH-------HHHHHhcccCCCCCC--hhhHHHHHHHh-cCccc-----hHHHHHHHHHHHHh
Q 040319 409 ICGYARSG------KPEHAI-------LLFHQSQSEATVVPD--EIALTSVLGVC-GTLGF-----HEMGKQIHSYALKT 467 (812)
Q Consensus 409 i~~~~~~g------~~~~A~-------~~~~~m~~~~g~~p~--~~t~~~ll~a~-~~~~~-----~~~a~~~~~~~~~~ 467 (812)
+..+.... ...... .++..+.++-|..++ .......+... ..... .+.+.+.+......
T Consensus 80 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~ 159 (324)
T PF11838_consen 80 LSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLACGDPECVAEARELFKAWLDG 159 (324)
T ss_dssp HHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Q ss_pred CC----CCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH
Q 040319 468 GF----SSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKAS-IKPDAIT 541 (812)
Q Consensus 468 g~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t 541 (812)
+. ..++.....+.....+.|..+.-..+++.... ++......++.+++-..+.+...++++.....+ +++....
T Consensus 160 ~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~ 239 (324)
T PF11838_consen 160 NDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIR 239 (324)
T ss_dssp TT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHH
T ss_pred CcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHH
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHH
Q 040319 542 FVLIISAYRYTNLNLVDSCRKLFLS 566 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~~~~a~~~~~~ 566 (812)
+...--+... .-..+.+++++..
T Consensus 240 ~~~~~~~~~~--~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 240 YVLAGLASSN--PVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHH-CS--TTCHHHHHHHHHH
T ss_pred HHHHHHhcCC--hhhHHHHHHHHHH
No 481
>PHA03100 ankyrin repeat protein; Provisional
Probab=20.59 E-value=1.1e+03 Score=25.74 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=6.7
Q ss_pred HHHhcCChHHHHHHHh
Q 040319 246 FYTKCGRVKDVVALLE 261 (812)
Q Consensus 246 ~~~~~g~~~~A~~l~~ 261 (812)
..+..|+.+-+.-+++
T Consensus 182 ~A~~~~~~~iv~~Ll~ 197 (480)
T PHA03100 182 IAVEKGNIDVIKFLLD 197 (480)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3344444444444333
No 482
>COG4855 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.52 E-value=38 Score=24.90 Aligned_cols=10 Identities=40% Similarity=1.032 Sum_probs=9.1
Q ss_pred cccchhhHHH
Q 040319 771 TCGDCHSFLK 780 (812)
Q Consensus 771 ~c~~ch~~~k 780 (812)
+|..||+++|
T Consensus 65 lC~~C~~a~~ 74 (76)
T COG4855 65 LCVECHEAIK 74 (76)
T ss_pred eeHHHHHHhh
Confidence 8999999987
No 483
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=20.25 E-value=1.6e+02 Score=21.31 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCC
Q 040319 705 IYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTP 758 (812)
Q Consensus 705 i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~ 758 (812)
+...+++|..++++.|-. -|+|+|+.-...+.+|
T Consensus 5 al~~lerlq~KL~~rGd~--------------------s~~e~L~~l~~~LqSP 38 (58)
T PF09045_consen 5 ALQALERLQAKLKERGDT--------------------SHSEKLSLLKDTLQSP 38 (58)
T ss_dssp HHHHHHHHHHHHHHCT----------------------TTHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHccCc--------------------ccHHHHHHHHHHHhCh
Confidence 456788999999998842 3778887766555443
No 484
>PF00322 Endothelin: Endothelin family; InterPro: IPR001928 Endothelins (ET's) are the most potent vasoconstrictors known [, , ]. They stimulate cardiac contraction, regulate release of vasoactive substances, and stimulate mitogenesis in blood vessels in primary culture. They also stimulate contraction in almost all other smooth muscles (e.g., uterus, bronchus, vas deferensa and stomach) and stimulate secretion in several tissues (e.g., kidney, liver and adrenals). Endothelin receptors have also been found in the brain, e.g. cerebral cortex, cerebellum and glial cells. Endothelins have been implicated in a variety of pathophysiological conditions associated with stress, including hypertension, myocardial infarction, subarachnoid haemorrhage and renal failure. Endothelins are synthesised by proteolysis of large preproendothelins, which are cleaved to 'big endothelins' before being processed to the mature peptide. Sarafotoxins (SRTX) and bibrotoxin (BTX) are cardiotoxins from the venom of snakes of the Atractaspis family, structurally and functionally [, ] similar to endothelin. As shown in the following schematic representation, these peptides which are 21 residues long contain two intramolecular disulphide bonds. +-------------+ | | CxCxxxxxxxCxxxCxxxxxx | | +-------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0019229 regulation of vasoconstriction, 0005576 extracellular region; PDB: 1V6R_A 1T7H_A 1EDP_A 1EDN_A 3CMH_A 6CMH_A 1SRB_A 2LDF_A.
Probab=20.02 E-value=45 Score=20.40 Aligned_cols=8 Identities=38% Similarity=1.219 Sum_probs=4.9
Q ss_pred CccCCCCC
Q 040319 804 GQCSCKDY 811 (812)
Q Consensus 804 g~csc~~~ 811 (812)
+.|||.++
T Consensus 4 pRCsC~s~ 11 (31)
T PF00322_consen 4 PRCSCASW 11 (31)
T ss_dssp --ECCSSS
T ss_pred cceecCCC
Confidence 57999875
Done!