Query 040319
Match_columns 812
No_of_seqs 790 out of 4813
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 11:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.9E-41 3.4E-45 383.5 29.4 499 41-655 61-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.5E-40 1.9E-44 377.2 33.7 500 144-672 63-579 (597)
3 4g26_A Pentatricopeptide repea 99.9 2.4E-26 8.3E-31 252.5 15.8 185 402-590 26-223 (501)
4 4g26_A Pentatricopeptide repea 99.9 8.5E-26 2.9E-30 248.1 19.9 184 65-250 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-23 3.7E-28 227.4 32.7 345 302-658 36-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4E-23 1.4E-27 223.0 34.9 352 306-671 6-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 8.6E-22 3E-26 217.1 26.2 347 298-678 25-412 (450)
8 2gw1_A Mitochondrial precursor 99.9 4.2E-21 1.4E-25 215.4 24.5 445 167-649 7-489 (514)
9 2gw1_A Mitochondrial precursor 99.9 6.4E-21 2.2E-25 213.9 25.9 420 244-672 13-478 (514)
10 3fp2_A TPR repeat-containing p 99.8 4E-19 1.4E-23 200.5 30.3 421 166-671 25-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.8 2.6E-19 8.8E-24 197.2 26.1 355 234-662 23-444 (450)
12 3fp2_A TPR repeat-containing p 99.8 5.2E-19 1.8E-23 199.6 27.8 436 134-647 25-500 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 1.9E-15 6.6E-20 174.8 52.7 576 29-666 721-1378(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 4.1E-15 1.4E-19 172.1 51.9 520 4-602 845-1380(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 6.7E-17 2.3E-21 171.6 26.8 310 299-655 3-352 (359)
16 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6.1E-22 173.0 20.7 322 281-641 16-344 (449)
17 1b89_A Protein (clathrin heavy 99.8 3.5E-17 1.2E-21 170.8 21.7 287 45-395 15-308 (449)
18 3ieg_A DNAJ homolog subfamily 99.8 2.4E-16 8E-21 167.3 27.4 293 369-671 3-334 (359)
19 3hym_B Cell division cycle pro 99.7 2.5E-16 8.6E-21 165.0 22.7 287 366-660 19-322 (330)
20 2ooe_A Cleavage stimulation fa 99.7 2.3E-14 7.8E-19 161.0 34.6 410 234-672 10-492 (530)
21 1fch_A Peroxisomal targeting s 99.7 7E-16 2.4E-20 164.6 19.3 278 379-667 35-354 (368)
22 3hym_B Cell division cycle pro 99.7 1.9E-15 6.5E-20 158.3 22.2 260 400-670 20-297 (330)
23 2xm6_A Protein corresponding t 99.7 2.3E-14 8E-19 159.2 32.0 367 235-656 37-453 (490)
24 3mkr_A Coatomer subunit epsilo 99.6 6.4E-14 2.2E-18 143.3 28.5 247 379-670 9-262 (291)
25 4g1t_A Interferon-induced prot 99.6 1.6E-14 5.6E-19 159.8 24.6 293 371-683 138-470 (472)
26 2xm6_A Protein corresponding t 99.6 2.2E-13 7.5E-18 151.3 33.4 352 298-674 38-434 (490)
27 4eqf_A PEX5-related protein; a 99.6 1.4E-15 4.8E-20 162.1 14.6 256 402-668 65-352 (365)
28 4eqf_A PEX5-related protein; a 99.6 9.2E-15 3.2E-19 155.7 20.6 231 437-672 64-310 (365)
29 1fch_A Peroxisomal targeting s 99.6 5.1E-15 1.8E-19 157.8 18.4 256 412-672 35-314 (368)
30 3mkr_A Coatomer subunit epsilo 99.6 1.2E-13 4E-18 141.4 27.2 253 247-543 9-272 (291)
31 3spa_A Mtrpol, DNA-directed RN 99.6 1.8E-16 6.1E-21 178.0 5.4 128 469-599 123-258 (1134)
32 3spa_A Mtrpol, DNA-directed RN 99.6 5.1E-16 1.7E-20 174.4 7.8 146 34-180 128-286 (1134)
33 3cv0_A Peroxisome targeting si 99.6 1.4E-14 4.9E-19 151.4 16.6 255 403-668 22-311 (327)
34 2ooe_A Cleavage stimulation fa 99.6 1.5E-12 5.1E-17 146.1 32.0 416 164-641 11-495 (530)
35 2pl2_A Hypothetical conserved 99.6 4.2E-14 1.4E-18 138.1 16.3 193 470-669 2-211 (217)
36 3cv0_A Peroxisome targeting si 99.6 1.7E-13 5.9E-18 143.1 21.8 228 298-569 20-268 (327)
37 4g1t_A Interferon-induced prot 99.5 3.8E-13 1.3E-17 148.7 22.0 377 236-650 50-471 (472)
38 3uq3_A Heat shock protein STI1 99.5 2.8E-13 9.5E-18 136.1 18.2 211 445-671 12-235 (258)
39 3u4t_A TPR repeat-containing p 99.5 5.5E-13 1.9E-17 135.2 15.2 247 371-658 5-270 (272)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 1E-12 3.5E-17 133.4 16.8 240 415-666 18-269 (275)
41 3uq3_A Heat shock protein STI1 99.4 1.3E-12 4.4E-17 131.1 16.3 233 404-652 7-256 (258)
42 2ho1_A Type 4 fimbrial biogene 99.4 4.2E-12 1.4E-16 127.1 17.7 195 473-672 37-238 (252)
43 2vq2_A PILW, putative fimbrial 99.4 5.4E-12 1.8E-16 123.6 17.3 196 472-672 7-211 (225)
44 2q7f_A YRRB protein; TPR, prot 99.4 3.8E-12 1.3E-16 126.5 13.3 195 472-672 22-222 (243)
45 2h6f_A Protein farnesyltransfe 99.4 8.2E-12 2.8E-16 132.1 16.5 243 403-655 98-365 (382)
46 4abn_A Tetratricopeptide repea 99.3 4.3E-12 1.5E-16 139.6 13.2 191 471-668 100-317 (474)
47 2ho1_A Type 4 fimbrial biogene 99.3 5.3E-11 1.8E-15 119.0 19.7 205 402-648 37-248 (252)
48 2q7f_A YRRB protein; TPR, prot 99.3 7.9E-12 2.7E-16 124.1 13.4 213 402-657 23-241 (243)
49 3vtx_A MAMA; tetratricopeptide 99.3 3.1E-11 1.1E-15 114.2 16.9 162 503-671 4-169 (184)
50 2vq2_A PILW, putative fimbrial 99.3 5.3E-11 1.8E-15 116.4 19.2 207 402-650 8-223 (225)
51 3e4b_A ALGK; tetratricopeptide 99.3 7.7E-11 2.6E-15 128.7 21.3 189 472-674 175-389 (452)
52 2h6f_A Protein farnesyltransfe 99.3 1.1E-11 3.6E-16 131.3 13.7 221 440-669 99-344 (382)
53 1xnf_A Lipoprotein NLPI; TPR, 99.3 2.2E-11 7.5E-16 123.5 15.1 217 448-672 15-244 (275)
54 3u4t_A TPR repeat-containing p 99.3 8.1E-11 2.8E-15 119.1 18.8 226 336-569 5-249 (272)
55 4a1s_A PINS, partner of inscut 99.3 8.1E-12 2.8E-16 135.2 11.6 197 473-671 126-371 (411)
56 4gyw_A UDP-N-acetylglucosamine 99.3 2.8E-11 9.4E-16 138.5 16.1 161 504-671 9-173 (723)
57 3sf4_A G-protein-signaling mod 99.3 1.6E-11 5.6E-16 132.3 12.9 197 473-671 87-335 (406)
58 2pl2_A Hypothetical conserved 99.3 4.8E-11 1.6E-15 116.2 14.9 63 368-430 4-67 (217)
59 3e4b_A ALGK; tetratricopeptide 99.3 1.8E-10 6.2E-15 125.8 21.1 282 374-674 40-353 (452)
60 3ro2_A PINS homolog, G-protein 99.3 1.3E-11 4.6E-16 128.9 11.6 197 473-671 83-331 (338)
61 1ouv_A Conserved hypothetical 99.3 7.9E-10 2.7E-14 112.0 23.4 225 402-674 6-253 (273)
62 3vtx_A MAMA; tetratricopeptide 99.2 6.2E-11 2.1E-15 112.1 12.9 165 472-643 4-175 (184)
63 3sf4_A G-protein-signaling mod 99.2 2.3E-11 7.9E-16 131.1 10.3 186 474-661 128-365 (406)
64 2ond_A Cleavage stimulation fa 99.2 1.3E-09 4.4E-14 112.6 20.8 216 419-644 33-276 (308)
65 4e6h_A MRNA 3'-END-processing 99.2 4.7E-08 1.6E-12 110.4 35.0 226 318-550 328-585 (679)
66 1ouv_A Conserved hypothetical 99.2 1.9E-09 6.6E-14 109.1 20.8 218 302-533 9-251 (273)
67 4e6h_A MRNA 3'-END-processing 99.2 3.4E-08 1.1E-12 111.6 32.5 440 181-654 47-585 (679)
68 4a1s_A PINS, partner of inscut 99.1 1.4E-10 4.7E-15 125.5 12.4 262 376-641 55-375 (411)
69 4i17_A Hypothetical protein; T 99.1 9.4E-10 3.2E-14 108.0 16.1 203 439-655 8-226 (228)
70 3as5_A MAMA; tetratricopeptide 99.1 6.5E-10 2.2E-14 104.7 14.2 159 474-671 9-172 (186)
71 2ond_A Cleavage stimulation fa 99.1 1.8E-09 6.2E-14 111.4 18.3 212 455-674 33-272 (308)
72 3nf1_A KLC 1, kinesin light ch 99.1 5.3E-11 1.8E-15 123.0 5.9 238 402-670 27-305 (311)
73 3ro2_A PINS homolog, G-protein 99.1 2.9E-10 1E-14 118.6 11.6 197 443-641 88-335 (338)
74 4abn_A Tetratricopeptide repea 99.1 7.3E-10 2.5E-14 121.7 14.5 177 489-672 84-287 (474)
75 3ulq_A Response regulator aspa 99.1 1.1E-09 3.9E-14 117.0 15.6 163 474-638 185-368 (383)
76 3as5_A MAMA; tetratricopeptide 99.1 2.4E-09 8.1E-14 100.8 15.8 168 439-645 9-180 (186)
77 3ulq_A Response regulator aspa 99.1 8.1E-10 2.8E-14 118.2 13.7 222 447-671 112-367 (383)
78 4i17_A Hypothetical protein; T 99.1 2.1E-09 7.2E-14 105.4 15.1 185 473-671 7-208 (228)
79 3nf1_A KLC 1, kinesin light ch 99.0 1.9E-10 6.5E-15 118.8 7.8 243 368-641 26-310 (311)
80 1hz4_A MALT regulatory protein 99.0 4.3E-08 1.5E-12 104.1 22.3 194 476-671 96-321 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.0 1.3E-09 4.5E-14 124.6 10.8 163 472-641 8-177 (723)
82 1qqe_A Vesicular transport pro 98.9 3.1E-09 1.1E-13 108.7 11.0 185 481-669 45-266 (292)
83 3edt_B KLC 2, kinesin light ch 98.9 5.3E-09 1.8E-13 106.0 11.9 221 449-671 12-280 (283)
84 3qky_A Outer membrane assembly 98.9 2.8E-08 9.7E-13 99.6 16.2 204 472-718 14-247 (261)
85 3q15_A PSP28, response regulat 98.9 1E-08 3.5E-13 109.3 13.2 220 448-670 111-363 (378)
86 4ga2_A E3 SUMO-protein ligase 98.9 4.3E-09 1.5E-13 95.4 8.4 140 480-658 4-149 (150)
87 3q15_A PSP28, response regulat 98.8 9.5E-08 3.3E-12 101.7 19.6 227 411-639 110-366 (378)
88 3mv2_B Coatomer subunit epsilo 98.8 3.1E-07 1.1E-11 91.9 20.8 175 492-673 85-283 (310)
89 3qou_A Protein YBBN; thioredox 98.8 4.9E-08 1.7E-12 99.4 14.2 172 491-669 104-281 (287)
90 2pzi_A Probable serine/threoni 98.8 7.1E-08 2.4E-12 110.9 16.7 167 484-658 402-583 (681)
91 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.1E-07 3.9E-12 92.7 15.5 183 473-675 4-216 (225)
92 1hz4_A MALT regulatory protein 98.7 7.5E-07 2.6E-11 94.5 22.0 194 372-568 96-320 (373)
93 1qqe_A Vesicular transport pro 98.7 1.1E-07 3.8E-12 97.1 14.0 193 448-644 47-275 (292)
94 3edt_B KLC 2, kinesin light ch 98.7 1.2E-07 4E-12 95.9 14.1 165 473-639 85-282 (283)
95 2r5s_A Uncharacterized protein 98.7 6.6E-08 2.3E-12 90.3 11.3 154 477-669 10-170 (176)
96 4ga2_A E3 SUMO-protein ligase 98.7 3.3E-08 1.1E-12 89.5 8.9 118 548-670 6-127 (150)
97 3qky_A Outer membrane assembly 98.7 1E-07 3.4E-12 95.6 13.3 203 438-662 15-251 (261)
98 2fo7_A Synthetic consensus TPR 98.7 1.8E-07 6E-12 82.3 13.3 128 506-671 3-131 (136)
99 2fo7_A Synthetic consensus TPR 98.7 1.1E-07 3.8E-12 83.6 11.7 95 579-673 3-99 (136)
100 3gyz_A Chaperone protein IPGC; 98.7 4.7E-08 1.6E-12 88.1 8.8 101 572-672 30-133 (151)
101 3urz_A Uncharacterized protein 98.6 1.5E-07 5.1E-12 90.6 11.7 124 510-641 60-189 (208)
102 2pzi_A Probable serine/threoni 98.6 2.7E-07 9.1E-12 106.1 15.6 191 449-648 402-612 (681)
103 3mv2_B Coatomer subunit epsilo 98.6 9.2E-07 3.1E-11 88.5 17.1 183 457-647 85-291 (310)
104 2vsy_A XCC0866; transferase, g 98.6 2.8E-07 9.6E-12 104.0 15.0 158 486-650 2-169 (568)
105 2vgx_A Chaperone SYCD; alterna 98.6 1E-07 3.4E-12 86.0 9.0 95 577-671 21-117 (148)
106 3rjv_A Putative SEL1 repeat pr 98.6 1.3E-06 4.5E-11 84.1 16.9 163 502-674 16-199 (212)
107 2vsy_A XCC0866; transferase, g 98.6 2E-07 6.9E-12 105.2 12.8 150 517-673 2-158 (568)
108 4gco_A Protein STI-1; structur 98.5 2.2E-07 7.4E-12 81.1 8.9 99 573-671 8-109 (126)
109 4gco_A Protein STI-1; structur 98.5 3.6E-07 1.2E-11 79.6 10.3 107 542-653 16-125 (126)
110 3urz_A Uncharacterized protein 98.5 4.9E-07 1.7E-11 86.9 11.7 157 507-671 7-185 (208)
111 2ifu_A Gamma-SNAP; membrane fu 98.5 3E-07 1E-11 94.6 10.0 59 611-669 157-221 (307)
112 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.5E-06 5.1E-11 84.7 14.4 184 440-645 6-220 (225)
113 2xcb_A PCRH, regulatory protei 98.5 8.8E-07 3E-11 79.1 11.3 95 577-671 18-114 (142)
114 3u3w_A Transcriptional activat 98.5 7.5E-06 2.6E-10 83.4 19.3 160 509-670 80-264 (293)
115 2r5s_A Uncharacterized protein 98.4 3.4E-07 1.2E-11 85.4 8.2 154 441-602 9-169 (176)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.3E-06 4.6E-11 84.0 12.8 114 554-672 19-150 (213)
117 3dra_A Protein farnesyltransfe 98.4 1.5E-05 5.2E-10 80.6 20.7 227 416-653 47-303 (306)
118 2c2l_A CHIP, carboxy terminus 98.4 1.4E-07 4.8E-12 95.5 5.7 190 472-671 3-198 (281)
119 2qfc_A PLCR protein; TPR, HTH, 98.4 4E-06 1.4E-10 85.5 16.6 163 505-669 76-263 (293)
120 2ifu_A Gamma-SNAP; membrane fu 98.4 1.3E-06 4.3E-11 89.8 12.8 219 415-664 4-253 (307)
121 1p5q_A FKBP52, FK506-binding p 98.4 9E-08 3.1E-12 99.7 3.0 161 485-669 125-291 (336)
122 2uy1_A Cleavage stimulation fa 98.4 9E-05 3.1E-09 81.1 26.6 199 298-532 212-412 (493)
123 3dra_A Protein farnesyltransfe 98.4 7.2E-06 2.5E-10 82.9 16.1 211 453-671 48-286 (306)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.3 4E-06 1.4E-10 80.6 13.3 144 476-642 9-154 (213)
125 2lni_A Stress-induced-phosphop 98.3 6.6E-06 2.3E-10 71.9 12.8 119 502-658 14-133 (133)
126 2kck_A TPR repeat; tetratricop 98.3 3.4E-06 1.2E-10 71.1 10.4 98 576-673 5-107 (112)
127 2e2e_A Formate-dependent nitri 98.3 2.6E-06 9E-11 79.2 10.4 116 554-672 23-144 (177)
128 3qou_A Protein YBBN; thioredox 98.3 9.9E-06 3.4E-10 82.1 15.2 150 444-601 123-279 (287)
129 2vyi_A SGTA protein; chaperone 98.3 4.1E-06 1.4E-10 72.9 10.7 84 577-660 46-131 (131)
130 3upv_A Heat shock protein STI1 98.3 3.1E-06 1.1E-10 73.6 9.8 95 577-671 4-100 (126)
131 2uy1_A Cleavage stimulation fa 98.3 0.00021 7.3E-09 78.1 26.5 201 420-637 197-412 (493)
132 1na0_A Designed protein CTPR3; 98.3 4.7E-06 1.6E-10 71.8 10.9 80 578-657 44-125 (125)
133 1a17_A Serine/threonine protei 98.3 4.4E-06 1.5E-10 76.5 11.1 94 577-670 47-144 (166)
134 1hxi_A PEX5, peroxisome target 98.3 1.6E-06 5.5E-11 74.8 7.5 95 577-671 17-113 (121)
135 2fbn_A 70 kDa peptidylprolyl i 98.2 1E-06 3.6E-11 83.8 6.5 169 479-670 10-184 (198)
136 2vgx_A Chaperone SYCD; alterna 98.2 1.3E-06 4.4E-11 78.6 6.5 110 535-649 16-129 (148)
137 3gyz_A Chaperone protein IPGC; 98.2 3E-06 1E-10 76.2 8.5 86 554-642 49-137 (151)
138 3q49_B STIP1 homology and U bo 98.2 6.5E-06 2.2E-10 72.6 10.1 98 575-672 7-106 (137)
139 4f3v_A ESX-1 secretion system 98.2 8.5E-07 2.9E-11 87.6 4.5 181 485-672 18-237 (282)
140 3u3w_A Transcriptional activat 98.2 8.1E-05 2.8E-09 75.6 19.3 158 479-638 81-266 (293)
141 4f3v_A ESX-1 secretion system 98.2 2.9E-06 9.9E-11 83.8 7.9 138 509-653 107-251 (282)
142 3sz7_A HSC70 cochaperone (SGT) 98.2 4.7E-06 1.6E-10 76.4 8.9 95 577-671 11-107 (164)
143 1elw_A TPR1-domain of HOP; HOP 98.2 7.8E-06 2.7E-10 69.5 9.8 95 577-671 4-100 (118)
144 3gw4_A Uncharacterized protein 98.2 1.9E-05 6.5E-10 75.0 13.4 155 485-670 4-174 (203)
145 2e2e_A Formate-dependent nitri 98.2 7.6E-06 2.6E-10 76.0 10.1 126 516-648 22-154 (177)
146 4gcn_A Protein STI-1; structur 98.1 3.7E-06 1.3E-10 73.3 7.4 94 578-671 9-111 (127)
147 3rjv_A Putative SEL1 repeat pr 98.1 3.3E-05 1.1E-09 74.2 14.6 171 388-569 5-196 (212)
148 1na0_A Designed protein CTPR3; 98.1 9.1E-06 3.1E-10 69.9 9.8 96 577-672 9-106 (125)
149 2qfc_A PLCR protein; TPR, HTH, 98.1 3.2E-05 1.1E-09 78.6 14.8 162 475-638 77-266 (293)
150 2lni_A Stress-induced-phosphop 98.1 1E-05 3.5E-10 70.7 8.8 96 576-671 15-112 (133)
151 2dba_A Smooth muscle cell asso 98.1 3.5E-05 1.2E-09 68.7 12.4 119 502-656 26-146 (148)
152 2xev_A YBGF; tetratricopeptide 98.1 1.1E-05 3.8E-10 70.2 8.8 92 580-671 5-104 (129)
153 2xcb_A PCRH, regulatory protei 98.1 4E-06 1.4E-10 74.7 5.9 95 554-651 31-128 (142)
154 3rkv_A Putative peptidylprolyl 98.0 1.4E-05 4.7E-10 73.0 9.5 93 579-671 13-125 (162)
155 1elw_A TPR1-domain of HOP; HOP 98.0 3.3E-05 1.1E-09 65.5 11.0 77 577-653 38-116 (118)
156 2vyi_A SGTA protein; chaperone 98.0 1.2E-05 4.3E-10 69.7 8.4 97 576-672 11-109 (131)
157 3dss_A Geranylgeranyl transfer 98.0 0.00019 6.3E-09 73.0 18.0 223 419-651 47-317 (331)
158 2dba_A Smooth muscle cell asso 98.0 1.9E-05 6.4E-10 70.5 9.7 96 576-671 27-127 (148)
159 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.3E-06 8E-11 93.1 3.5 161 485-669 246-412 (457)
160 3gw4_A Uncharacterized protein 98.0 6.5E-05 2.2E-09 71.2 13.3 129 472-602 25-172 (203)
161 2hr2_A Hypothetical protein; a 98.0 1.3E-05 4.5E-10 71.2 7.4 91 581-671 15-130 (159)
162 1wao_1 Serine/threonine protei 98.0 1.3E-05 4.5E-10 87.5 8.7 111 554-667 19-134 (477)
163 1a17_A Serine/threonine protei 98.0 2.8E-05 9.6E-10 70.9 9.7 125 506-637 15-145 (166)
164 1wao_1 Serine/threonine protei 97.9 1.4E-05 4.8E-10 87.3 8.3 115 480-601 13-134 (477)
165 3sz7_A HSC70 cochaperone (SGT) 97.9 4.6E-05 1.6E-09 69.6 10.6 75 577-651 45-121 (164)
166 3q7a_A Farnesyltransferase alp 97.9 0.00083 2.8E-08 68.6 20.7 169 413-592 65-257 (349)
167 2if4_A ATFKBP42; FKBP-like, al 97.9 2.5E-05 8.7E-10 81.1 9.8 145 505-671 180-327 (338)
168 3upv_A Heat shock protein STI1 97.9 4E-05 1.4E-09 66.4 9.4 76 578-653 39-122 (126)
169 3k9i_A BH0479 protein; putativ 97.9 6.4E-06 2.2E-10 70.5 4.0 82 590-671 3-89 (117)
170 1dce_A Protein (RAB geranylger 97.9 0.00019 6.5E-09 79.8 16.5 168 487-661 43-244 (567)
171 3q7a_A Farnesyltransferase alp 97.9 0.00017 6E-09 73.6 14.8 211 453-671 69-330 (349)
172 4gcn_A Protein STI-1; structur 97.9 4.7E-05 1.6E-09 66.1 9.3 61 505-569 9-70 (127)
173 1p5q_A FKBP52, FK506-binding p 97.9 6.5E-05 2.2E-09 77.9 11.7 118 472-596 146-283 (336)
174 1elr_A TPR2A-domain of HOP; HO 97.9 2.8E-05 9.5E-10 67.5 7.5 95 577-671 4-107 (131)
175 2c2l_A CHIP, carboxy terminus 97.8 5.6E-05 1.9E-09 76.2 10.2 101 540-645 5-108 (281)
176 4b4t_Q 26S proteasome regulato 97.8 8.2E-05 2.8E-09 80.3 11.7 187 482-670 13-243 (434)
177 2hr2_A Hypothetical protein; a 97.8 3.7E-05 1.3E-09 68.4 6.7 117 505-649 12-142 (159)
178 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00013 4.5E-09 69.0 11.1 95 577-671 38-150 (198)
179 2l6j_A TPR repeat-containing p 97.8 4.2E-05 1.4E-09 64.3 6.9 93 576-668 3-103 (111)
180 3q49_B STIP1 homology and U bo 97.8 6E-05 2.1E-09 66.2 8.1 64 578-641 44-109 (137)
181 1hxi_A PEX5, peroxisome target 97.7 6.5E-05 2.2E-09 64.5 7.6 67 577-643 51-119 (121)
182 3k9i_A BH0479 protein; putativ 97.7 3.8E-05 1.3E-09 65.6 5.4 104 554-657 3-109 (117)
183 3rkv_A Putative peptidylprolyl 97.7 9.3E-05 3.2E-09 67.4 8.1 129 505-654 12-143 (162)
184 3dss_A Geranylgeranyl transfer 97.7 0.00093 3.2E-08 67.9 15.9 209 455-671 47-303 (331)
185 2xev_A YBGF; tetratricopeptide 97.7 0.00025 8.5E-09 61.3 10.3 74 579-652 41-119 (129)
186 3ro3_A PINS homolog, G-protein 97.6 6E-05 2E-09 68.1 6.2 92 579-670 51-156 (164)
187 1na3_A Designed protein CTPR2; 97.6 0.00017 5.7E-09 57.8 7.9 81 577-657 9-91 (91)
188 1elr_A TPR2A-domain of HOP; HO 97.6 9.4E-05 3.2E-09 64.0 6.8 115 505-655 5-124 (131)
189 3ma5_A Tetratricopeptide repea 97.6 0.00017 5.8E-09 59.4 7.8 64 608-671 6-69 (100)
190 1ihg_A Cyclophilin 40; ppiase 97.6 0.00011 3.7E-09 77.2 8.2 137 504-664 223-362 (370)
191 2kck_A TPR repeat; tetratricop 97.6 0.00027 9.2E-09 59.0 9.3 88 477-568 10-104 (112)
192 3ro3_A PINS homolog, G-protein 97.6 0.00015 5.3E-09 65.3 8.2 132 507-640 12-160 (164)
193 1ihg_A Cyclophilin 40; ppiase 97.5 0.00024 8.2E-09 74.6 10.2 64 608-671 272-335 (370)
194 2kat_A Uncharacterized protein 97.5 0.00011 3.9E-09 62.3 6.1 77 595-671 3-81 (115)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00023 8E-09 77.2 9.5 95 578-672 269-380 (457)
196 4b4t_Q 26S proteasome regulato 97.5 0.00078 2.7E-08 72.5 13.6 194 377-603 12-242 (434)
197 3n71_A Histone lysine methyltr 97.5 0.00018 6.1E-09 78.0 8.0 121 554-674 322-466 (490)
198 1zu2_A Mitochondrial import re 97.4 4.1E-05 1.4E-09 67.9 2.2 84 589-672 14-120 (158)
199 3bee_A Putative YFRE protein; 97.4 0.00039 1.3E-08 56.1 7.5 69 606-674 3-74 (93)
200 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00021 7.3E-09 74.1 6.2 112 540-670 180-291 (338)
201 1zu2_A Mitochondrial import re 97.3 0.00024 8.3E-09 62.9 5.0 53 593-645 62-127 (158)
202 3n71_A Histone lysine methyltr 97.2 0.00097 3.3E-08 72.2 10.0 115 586-718 318-450 (490)
203 3ly7_A Transcriptional activat 97.2 0.0081 2.8E-07 61.2 15.8 138 502-641 192-342 (372)
204 3qwp_A SET and MYND domain-con 97.2 0.0011 3.6E-08 70.8 10.0 112 588-717 298-427 (429)
205 2l6j_A TPR repeat-containing p 97.1 0.0009 3.1E-08 55.8 7.1 66 607-672 2-67 (111)
206 1klx_A Cysteine rich protein B 97.0 0.0048 1.6E-07 54.1 10.7 113 554-674 8-128 (138)
207 1dce_A Protein (RAB geranylger 97.0 0.0038 1.3E-07 69.4 12.0 150 515-671 39-220 (567)
208 1klx_A Cysteine rich protein B 96.9 0.0039 1.3E-07 54.6 9.0 113 517-640 8-128 (138)
209 1na3_A Designed protein CTPR2; 96.8 0.002 6.9E-08 51.2 6.6 64 608-671 8-71 (91)
210 3qww_A SET and MYND domain-con 96.8 0.0015 5.1E-08 69.5 7.1 83 610-710 341-431 (433)
211 3lvg_A Clathrin heavy chain 1; 96.7 0.00065 2.2E-08 70.2 3.2 150 375-563 384-534 (624)
212 2kat_A Uncharacterized protein 96.7 0.0027 9.3E-08 53.4 6.7 79 560-641 4-85 (115)
213 2kc7_A BFR218_protein; tetratr 96.5 0.0086 2.9E-07 48.5 8.0 64 583-646 6-72 (99)
214 3ma5_A Tetratricopeptide repea 96.5 0.0062 2.1E-07 49.7 6.9 63 503-569 6-69 (100)
215 3mkq_A Coatomer beta'-subunit; 96.4 0.057 2E-06 63.2 17.5 101 378-498 661-761 (814)
216 3qww_A SET and MYND domain-con 96.2 0.02 6.8E-07 60.8 11.0 93 554-646 311-424 (433)
217 3lvg_A Clathrin heavy chain 1; 96.2 0.0024 8.2E-08 66.1 3.4 409 166-639 54-510 (624)
218 2kc7_A BFR218_protein; tetratr 96.2 0.0066 2.3E-07 49.2 5.6 58 615-672 6-64 (99)
219 3u64_A Protein TP_0956; tetrat 96.0 0.01 3.5E-07 57.8 6.6 87 593-679 179-276 (301)
220 3ly7_A Transcriptional activat 96.0 0.029 9.9E-07 57.1 10.2 134 535-672 190-339 (372)
221 3qwp_A SET and MYND domain-con 95.8 0.042 1.4E-06 58.4 11.2 96 554-649 300-416 (429)
222 3mkq_A Coatomer beta'-subunit; 95.5 0.47 1.6E-05 55.3 19.8 97 143-258 661-757 (814)
223 1pc2_A Mitochondria fission pr 95.5 0.062 2.1E-06 46.9 8.9 93 555-649 12-111 (152)
224 1pc2_A Mitochondria fission pr 95.4 0.045 1.5E-06 47.8 7.7 91 606-722 29-124 (152)
225 3bee_A Putative YFRE protein; 95.3 0.082 2.8E-06 42.2 8.5 70 574-643 3-77 (93)
226 4ady_A RPN2, 26S proteasome re 95.0 6.7 0.00023 45.2 30.2 256 276-540 382-662 (963)
227 2v5f_A Prolyl 4-hydroxylase su 94.9 0.074 2.5E-06 43.6 7.5 73 578-650 6-87 (104)
228 1wy6_A Hypothetical protein ST 94.8 1.1 3.6E-05 37.7 13.7 140 515-675 18-157 (172)
229 1qsa_A Protein (soluble lytic 93.5 8.4 0.00029 42.5 22.4 260 371-649 74-355 (618)
230 3u64_A Protein TP_0956; tetrat 92.9 0.55 1.9E-05 45.8 10.2 112 486-602 134-265 (301)
231 2qx5_A Nucleoporin NIC96; mRNA 92.5 7.7 0.00026 43.0 20.0 80 305-395 300-382 (661)
232 1nzn_A CGI-135 protein, fissio 92.3 1.2 4.3E-05 37.2 10.3 75 575-649 33-114 (126)
233 4gns_B Protein CSD3, chitin bi 92.1 0.26 9E-06 55.5 7.9 53 618-670 346-398 (754)
234 3mkq_B Coatomer subunit alpha; 91.8 3.2 0.00011 37.1 13.1 129 481-635 13-141 (177)
235 3mkq_B Coatomer subunit alpha; 91.5 3.9 0.00013 36.6 13.3 101 379-499 15-115 (177)
236 2v5f_A Prolyl 4-hydroxylase su 90.1 0.7 2.4E-05 37.5 6.8 63 609-671 5-74 (104)
237 1nzn_A CGI-135 protein, fissio 89.0 1.3 4.4E-05 37.1 7.4 66 606-671 32-102 (126)
238 4b4t_P 26S proteasome regulato 88.3 18 0.00063 38.1 18.0 169 303-503 141-325 (445)
239 1y8m_A FIS1; mitochondria, unk 88.1 6.8 0.00023 33.4 11.3 43 627-669 60-103 (144)
240 4h7y_A Dual specificity protei 86.6 2.8 9.6E-05 36.1 8.1 109 501-645 10-130 (161)
241 4ady_A RPN2, 26S proteasome re 85.7 57 0.002 37.6 31.7 218 379-603 384-620 (963)
242 1wy6_A Hypothetical protein ST 85.5 16 0.00053 30.9 13.2 67 165-233 90-156 (172)
243 4h7y_A Dual specificity protei 82.1 3.2 0.00011 35.7 6.5 99 576-674 12-125 (161)
244 2wpv_A GET4, UPF0363 protein Y 81.9 42 0.0014 33.1 19.5 133 270-415 35-178 (312)
245 2uwj_G Type III export protein 81.4 14 0.00047 29.0 9.1 60 276-338 47-106 (115)
246 1y8m_A FIS1; mitochondria, unk 80.0 20 0.0007 30.5 10.7 75 574-648 36-116 (144)
247 3lpz_A GET4 (YOR164C homolog); 79.9 51 0.0017 32.8 21.8 133 270-415 37-180 (336)
248 3o48_A Mitochondria fission 1 78.3 6.2 0.00021 33.2 7.0 72 574-645 37-114 (134)
249 2p58_C Putative type III secre 78.0 22 0.00075 28.0 9.3 86 453-543 22-107 (116)
250 3o48_A Mitochondria fission 1 77.5 10 0.00035 31.8 8.1 85 523-608 22-110 (134)
251 2uwj_G Type III export protein 77.4 21 0.00072 28.0 9.0 86 453-543 21-106 (115)
252 3ffl_A Anaphase-promoting comp 76.4 5.3 0.00018 35.1 6.4 26 644-669 123-148 (167)
253 1v54_E Cytochrome C oxidase po 75.8 13 0.00044 29.4 7.5 53 597-649 33-85 (109)
254 2ff4_A Probable regulatory pro 75.2 4.5 0.00015 42.0 6.8 67 612-678 174-245 (388)
255 3ffl_A Anaphase-promoting comp 73.7 9.4 0.00032 33.5 7.2 111 479-605 26-150 (167)
256 4b4t_P 26S proteasome regulato 71.8 1E+02 0.0035 32.3 17.6 95 507-603 140-244 (445)
257 3lpz_A GET4 (YOR164C homolog); 71.5 85 0.0029 31.2 22.1 133 37-181 39-182 (336)
258 2ff4_A Probable regulatory pro 71.0 15 0.00052 38.0 9.6 69 508-580 175-248 (388)
259 2p58_C Putative type III secre 69.2 23 0.0008 27.8 7.5 85 13-104 22-108 (116)
260 3esl_A Checkpoint serine/threo 68.8 69 0.0024 29.1 12.1 105 594-724 61-171 (202)
261 1v54_E Cytochrome C oxidase po 68.1 20 0.00069 28.3 7.1 62 520-585 26-87 (109)
262 3mv2_A Coatomer subunit alpha; 67.8 59 0.002 32.0 12.1 124 515-672 125-256 (325)
263 1wdy_A 2-5A-dependent ribonucl 67.3 61 0.0021 30.9 13.0 47 215-261 192-240 (285)
264 2wpv_A GET4, UPF0363 protein Y 66.5 1E+02 0.0035 30.3 19.9 132 36-179 36-178 (312)
265 4fhn_B Nucleoporin NUP120; pro 66.3 61 0.0021 39.0 14.9 62 611-672 901-967 (1139)
266 3ltj_A Alpharep-4; protein eng 66.0 76 0.0026 28.5 18.0 92 234-326 87-178 (201)
267 4gns_B Protein CSD3, chitin bi 65.3 21 0.0007 40.3 9.6 50 514-567 347-397 (754)
268 3eiq_C Programmed cell death p 65.0 90 0.0031 31.5 13.4 63 476-538 220-287 (358)
269 3ltm_A Alpha-REP4; protein eng 64.5 84 0.0029 28.5 18.3 92 235-327 93-184 (211)
270 2l0z_A Glycoprotein G2; zinc-b 63.8 2.3 7.8E-05 26.7 0.9 10 802-811 20-29 (42)
271 2y69_E Cytochrome C oxidase su 63.6 41 0.0014 28.2 8.4 56 595-650 74-129 (152)
272 3txn_A 26S proteasome regulato 61.2 1.3E+02 0.0044 30.9 14.0 56 545-602 105-164 (394)
273 1zbp_A Hypothetical protein VP 60.7 57 0.002 31.2 10.3 122 515-645 8-136 (273)
274 3kea_A K1L; tropism, ANK repea 60.0 55 0.0019 31.7 10.9 147 35-190 30-182 (285)
275 4fhn_B Nucleoporin NUP120; pro 58.8 67 0.0023 38.6 13.3 160 140-317 818-989 (1139)
276 1zbp_A Hypothetical protein VP 58.7 11 0.00039 36.0 5.1 57 585-641 5-63 (273)
277 2hgo_A CASSIICOLIN; toxin, dis 58.6 1.9 6.6E-05 23.2 -0.1 13 800-812 8-22 (27)
278 1n11_A Ankyrin; clathrin, BAND 56.1 1.8E+02 0.0062 29.9 15.1 49 140-189 17-67 (437)
279 3ltj_A Alpharep-4; protein eng 55.8 1.1E+02 0.0039 27.3 16.9 50 234-283 118-167 (201)
280 3ltm_A Alpha-REP4; protein eng 54.8 1.2E+02 0.0042 27.3 19.1 166 50-230 19-184 (211)
281 2y69_E Cytochrome C oxidase su 53.6 45 0.0015 28.0 7.1 60 522-585 71-130 (152)
282 1k1a_A B-cell lymphoma 3-encod 52.3 77 0.0026 29.3 10.3 55 5-59 13-69 (241)
283 1k1a_A B-cell lymphoma 3-encod 52.0 1E+02 0.0035 28.4 11.2 21 75-95 17-37 (241)
284 1n11_A Ankyrin; clathrin, BAND 51.7 2.2E+02 0.0075 29.3 14.9 76 104-185 16-96 (437)
285 1qc6_A EVH1 domain from ENA/VA 50.9 3.8 0.00013 34.6 0.4 41 759-807 43-87 (130)
286 3b7b_A Euchromatic histone-lys 50.4 99 0.0034 28.5 10.7 16 345-360 218-233 (237)
287 3b7b_A Euchromatic histone-lys 50.3 1E+02 0.0034 28.4 10.8 145 4-163 14-169 (237)
288 2lo3_A SAGA-associated factor 50.2 3.7 0.00013 26.0 0.2 11 767-777 15-25 (44)
289 3kea_A K1L; tropism, ANK repea 50.1 1.1E+02 0.0038 29.5 11.3 15 321-335 210-224 (285)
290 3eu9_A Huntingtin-interacting 48.7 84 0.0029 28.9 9.9 18 244-261 214-231 (240)
291 2k0q_A Putative uncharacterize 46.9 6.5 0.00022 28.2 1.0 21 787-807 7-27 (74)
292 3txn_A 26S proteasome regulato 45.4 2.7E+02 0.0091 28.5 16.1 25 372-396 22-46 (394)
293 3eu9_A Huntingtin-interacting 45.3 1.6E+02 0.0054 26.9 11.3 19 143-162 48-66 (240)
294 4b4t_R RPN7, 26S proteasome re 41.5 54 0.0018 34.3 7.7 93 475-569 133-236 (429)
295 1wdy_A 2-5A-dependent ribonucl 41.0 2.3E+02 0.0079 26.6 14.2 47 138-185 6-55 (285)
296 1qsa_A Protein (soluble lytic 40.6 4E+02 0.014 29.2 36.0 348 138-529 76-438 (618)
297 4b4t_R RPN7, 26S proteasome re 40.2 96 0.0033 32.3 9.4 93 577-669 131-234 (429)
298 2nsz_A Programmed cell death p 37.9 1.7E+02 0.006 24.2 8.9 64 272-335 11-79 (129)
299 3mkr_B Coatomer subunit alpha; 37.8 1.1E+02 0.0037 30.2 8.4 38 604-641 191-230 (320)
300 1ug3_A EIF4GI, eukaryotic prot 37.8 2E+02 0.0069 28.6 11.0 91 37-127 15-113 (339)
301 2dl1_A Spartin; SPG20, MIT, st 36.8 1.3E+02 0.0043 24.5 7.2 35 628-671 48-82 (116)
302 1oyz_A Hypothetical protein YI 36.6 2.8E+02 0.0096 26.2 18.9 247 259-551 28-279 (280)
303 3jxi_A Vanilloid receptor-rela 36.1 60 0.0021 30.7 6.7 91 73-165 11-120 (260)
304 4a1g_A Mitotic checkpoint seri 35.2 1.5E+02 0.0053 25.4 8.1 46 628-673 84-131 (152)
305 3hra_A Ankyrin repeat family p 35.2 1.8E+02 0.0062 25.6 9.6 54 280-333 115-172 (201)
306 3jxi_A Vanilloid receptor-rela 33.8 89 0.0031 29.4 7.5 56 173-229 9-73 (260)
307 2zu6_B Programmed cell death p 33.7 3.2E+02 0.011 26.8 11.3 66 405-472 169-236 (307)
308 3hra_A Ankyrin repeat family p 33.6 2E+02 0.0067 25.4 9.6 19 42-60 11-29 (201)
309 2zu6_B Programmed cell death p 32.7 3.3E+02 0.011 26.7 11.2 73 302-375 169-243 (307)
310 2nsz_A Programmed cell death p 32.4 2.2E+02 0.0074 23.6 9.3 67 36-102 10-81 (129)
311 2ion_A PDCD4, programmed cell 31.7 1.3E+02 0.0046 25.8 7.3 67 36-102 12-83 (152)
312 2r9g_A AAA ATPase, central reg 31.1 2.6E+02 0.009 25.2 9.0 66 301-367 13-86 (204)
313 3eiq_C Programmed cell death p 30.2 4.3E+02 0.015 26.5 13.4 66 405-472 220-287 (358)
314 1ug3_A EIF4GI, eukaryotic prot 29.8 2.4E+02 0.0082 28.1 10.0 26 241-266 15-40 (339)
315 2wvi_A Mitotic checkpoint seri 29.7 1.9E+02 0.0066 25.2 7.9 47 628-674 79-127 (164)
316 2qx5_A Nucleoporin NIC96; mRNA 29.6 4.1E+02 0.014 29.3 12.4 21 4-24 158-178 (661)
317 2d2s_A Exocyst complex compone 27.1 2.7E+02 0.0094 25.9 9.2 22 306-327 25-46 (235)
318 1j0t_A MIH, MOLT-inhibiting ho 25.5 13 0.00043 27.8 -0.3 14 767-780 20-33 (78)
319 3i5p_A Nucleoporin NUP170; hel 24.8 4.2E+02 0.014 28.2 11.0 170 489-673 51-247 (525)
320 3mhs_E SAGA-associated factor 24.4 22 0.00075 27.5 0.8 24 754-781 64-87 (96)
321 2pnn_A Transient receptor pote 24.2 2.2E+02 0.0077 26.8 8.5 59 168-228 13-80 (273)
322 2pnn_A Transient receptor pote 24.1 1.7E+02 0.0059 27.6 7.7 18 145-163 109-126 (273)
323 2r9g_A AAA ATPase, central reg 23.7 4.1E+02 0.014 24.0 9.1 44 510-556 17-63 (204)
324 2etb_A Transient receptor pote 23.2 2.2E+02 0.0075 26.5 8.1 89 73-164 8-116 (256)
325 3ljn_A Hypothetical protein; a 22.8 2.7E+02 0.0092 27.7 9.2 17 246-262 250-266 (364)
326 3bge_A Predicted ATPase; struc 22.6 2.6E+02 0.009 25.1 7.4 45 304-348 9-56 (201)
327 3ctd_A Putative ATPase, AAA fa 22.5 3.6E+02 0.012 24.6 8.3 69 298-366 31-107 (213)
328 2d2s_A Exocyst complex compone 22.4 3E+02 0.01 25.7 8.4 23 70-92 24-46 (235)
329 3esl_A Checkpoint serine/threo 22.0 3.2E+02 0.011 24.8 8.0 46 454-499 95-141 (202)
330 3ljn_A Hypothetical protein; a 21.6 2.9E+02 0.0098 27.4 9.1 18 245-262 178-195 (364)
331 3ygs_P Procaspase 9; apoptosis 21.4 2E+02 0.0067 22.4 5.9 37 47-83 51-87 (97)
332 2ion_A PDCD4, programmed cell 21.0 1.4E+02 0.0048 25.7 5.4 27 271-297 12-38 (152)
333 1ya0_A SMG-7 transcript varian 20.7 1.5E+02 0.0052 31.5 6.7 43 620-662 163-205 (497)
334 3ygs_P Procaspase 9; apoptosis 20.7 1E+02 0.0036 24.1 4.1 39 150-188 52-90 (97)
335 3twe_A Alpha4H; unknown functi 20.7 1.1E+02 0.0039 16.4 2.8 17 702-718 3-19 (27)
336 1bd8_A P19INK4D CDK4/6 inhibit 20.2 1.8E+02 0.0061 24.4 6.2 14 249-262 110-123 (156)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-41 Score=383.45 Aligned_cols=499 Identities=10% Similarity=-0.050 Sum_probs=355.5
Q ss_pred HHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 040319 41 SAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQ 120 (812)
Q Consensus 41 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 120 (812)
..+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|.+.|+++.|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3456778888999999999999999999999999999999999999999985 46788999999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCC-------------------CcchHHHHHHHHHcCCC
Q 040319 121 IHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHK-------------------DTVSWNTVISSVVNEFE 181 (812)
Q Consensus 121 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~ 181 (812)
+++.+... .+++.+++.++.+|.++| ++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLY-DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTT-CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHh-hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 99987543 678999999999999999 999999999954433 47889999999999999
Q ss_pred hhHHHHHHHHhHhcCCCCCCcchH-HHHHHHHhcCCChHH--HHHH-HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 040319 182 YEKAFELFRDMKRDNGFTVDYFTI-STLLTACTGCFVLME--GRAV-HAHAIRIGLGANLSVNNALIGFYTKCGRVKDVV 257 (812)
Q Consensus 182 ~~~A~~l~~~m~~~~g~~pd~~t~-~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 257 (812)
+++|+++|++|. .. .|+..+. ..+...+...+..+. +..+ +..+...+..+...+++.++.+|.+.|++++|.
T Consensus 216 ~~~A~~~~~~~~-~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 216 FDRAKECYKEAL-MV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHHHHHHHH-HH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHH-Hh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 999999999984 32 3544433 333322222211111 1111 233333333334445555556666666666666
Q ss_pred HHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 040319 258 ALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE--KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEF 335 (812)
Q Consensus 258 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 335 (812)
+ +|+++.+ ++..+|+.++.+|.+.|++++|+.+|++|.+.+.
T Consensus 293 ~-------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----- 336 (597)
T 2xpi_A 293 D-------------------------------YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP----- 336 (597)
T ss_dssp H-------------------------------HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred H-------------------------------HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-----
Confidence 6 6666655 6777788888888888888888888888776431
Q ss_pred HHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCCceeeeHHHHHHHHH
Q 040319 336 TLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPT-DRDDSIIWTSMICGYAR 414 (812)
Q Consensus 336 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~~li~~~~~ 414 (812)
.+..+++.++..|.+.|++++|.++|+++.. .+++..+|+.++..|.+
T Consensus 337 -------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 337 -------------------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp -------------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred -------------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 1223333444445555555555555544431 13345666667777777
Q ss_pred cCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHH
Q 040319 415 SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIK 494 (812)
Q Consensus 415 ~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 494 (812)
.|++++|+++|+++.+ .. +.+..+++.++.+|.+.|++++|.+
T Consensus 386 ~g~~~~A~~~~~~~~~---~~----------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 386 VNKISEARRYFSKSST---MD----------------------------------PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp TTCHHHHHHHHHHHHH---HC----------------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHHH---hC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766654 11 2345677778888888888888888
Q ss_pred HHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 495 AFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 495 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
+|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+. .| +..++..+...|.+ .|++++|.++|+++.+.
T Consensus 429 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFN--KSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH--hCCHHHHHHHHHHHHHh
Confidence 8876643 47788888889999999999999999998873 44 46788888888888 89999999999888763
Q ss_pred c---CccCC--cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 571 Y---NIEPT--SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 571 ~---~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
. +..|+ ..+|..++.+|.+.|++++|.+.++++. ..| +..+|..+..+|...|+.++|...++++++++|+++
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 2 55777 6789999999999999999999998865 445 788999999999999999999999999999999999
Q ss_pred chHHHHHhhhhh
Q 040319 644 ATYILVSNLYSS 655 (812)
Q Consensus 644 ~~~~~l~~~y~~ 655 (812)
.++..|+++|..
T Consensus 585 ~~~~~l~~~~~~ 596 (597)
T 2xpi_A 585 MASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-40 Score=377.23 Aligned_cols=500 Identities=9% Similarity=-0.055 Sum_probs=396.2
Q ss_pred hhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHH
Q 040319 144 YGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRA 223 (812)
Q Consensus 144 y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 223 (812)
+.+.| ....++..|+.++.+++..|+.++..|.+.|++++|+.+|++| . +..||..++..+..+|...|++++|.+
T Consensus 63 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~--~~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDG-SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKV-L--DITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHH-H--HHHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccC-ccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHH-H--hhCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 45667 7888899999999999999999999999999999999999999 4 356788888888899999999999998
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHH
Q 040319 224 VHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYN 303 (812)
Q Consensus 224 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~ 303 (812)
++..+... +++..+++.++.+|.++|++++|.++|+++...+... .++.+.+. ++.-...+..+|+
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~ 204 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-------QDGGIKLEASMCY 204 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-------CCSSCCHHHHHHH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-------cccccchhHHHHH
Confidence 88877543 6778888888888888888888888777543222100 01111110 1111223578999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhccchhhh--hHHHH-HhhHHHhcCCCchhHHHHHHHHH
Q 040319 304 ALLAGYCKNGKAMEALGLFVKLLEEGLVLTEF-TLTSVVNACGLIMEAK--LSEQI-HGFVMKFGLGSNDCIEAALLDML 379 (812)
Q Consensus 304 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~--~a~~i-~~~~~~~g~~~~~~~~~~Li~~y 379 (812)
.++.+|.+.|++++|+++|++|.+.+ |+.. .+..+...+...+..+ ....+ +..+...+..+...+++.++.+|
T Consensus 205 ~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 205 LRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999864 4433 3444444333333222 22222 45555556666677788889999
Q ss_pred HhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHH
Q 040319 380 TRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQ 459 (812)
Q Consensus 380 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 459 (812)
.++|++++|.++|+++...+++..+|+.++.+|.+.|++++|+++|++|.. .+ +.+..++..++.++...|+.++|..
T Consensus 283 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE-ID-PYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred cCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-cC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999984455689999999999999999999999999987 33 2366789999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 040319 460 IHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIK 536 (812)
Q Consensus 460 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 536 (812)
++..+.+.. +.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+ ..
T Consensus 361 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 437 (597)
T 2xpi_A 361 ISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LF 437 (597)
T ss_dssp HHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TT
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 999998654 55788999999999999999999999998753 5688999999999999999999999999998 44
Q ss_pred C-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC
Q 040319 537 P-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNM-------PFQPK 608 (812)
Q Consensus 537 p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-------~~~p~ 608 (812)
| +..++..+..+|.+ .|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|+++|+++ +..|+
T Consensus 438 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQ--LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TTCSHHHHHHHHHHHH--HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred ccchHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 5 66899999999999 99999999999999873 2335889999999999999999999999987 34787
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 609 --VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 609 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
..+|..++.+|...|++++|+..++++++++|+++.+|..++++|.+.|+|++|.+.++++.+.
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999999999999998664
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.4e-26 Score=252.48 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=173.5
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCcc---------chHHHHHHHHHHHHhCCCCc
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLG---------FHEMGKQIHSYALKTGFSSD 472 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~g~~~~ 472 (812)
...++.+|.+|++.|++++|+++|++|.+ .|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 44688899999999999999999999999 999999999999999998654 47889999999999999999
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS----HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISA 548 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 548 (812)
..+||+||++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999864 89999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhc
Q 040319 549 YRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYW 590 (812)
Q Consensus 549 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 590 (812)
|++ .|++++|.++|++|.+ .+..|+..+|+.+++.+...
T Consensus 185 ~~~--~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMD--TKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHH--TTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred Hhh--CCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999 9999999999999997 89999999999999998764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=8.5e-26 Score=248.14 Aligned_cols=184 Identities=13% Similarity=0.103 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---------hHHHHHHHHHHHHhCCCCchH
Q 040319 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLE---------LELGFQIHALIVKMGCVDSVF 135 (812)
Q Consensus 65 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 135 (812)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 577889999999999999999
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHhcCC----CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHH
Q 040319 136 VTNALMGLYGKFSFCLDYLLKLFDELP----HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTA 211 (812)
Q Consensus 136 ~~~~li~~y~~~g~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~ 211 (812)
+||+||.+|++.| +++.|.++|++|. .||..+||+||.+|++.|+.++|.++|++| ...|+.||..||++||.+
T Consensus 107 tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M-~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 107 TFTNGARLAVAKD-DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM-VESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHH
Confidence 9999999999999 9999999998876 479999999999999999999999999999 888999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 040319 212 CTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKC 250 (812)
Q Consensus 212 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 250 (812)
|++.|++++|.+++++|.+.|..|+..+|+.++..|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999888764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.1e-23 Score=227.38 Aligned_cols=345 Identities=11% Similarity=0.031 Sum_probs=229.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHh
Q 040319 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTR 381 (812)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~ 381 (812)
+..+...+.+.|++++|...++...+.. +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+...|.+
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 3334444444555555555554444331 2233344444444444444444444444444332 1233445566666666
Q ss_pred cCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC-hhhHHHHHHHhcCccchHHHHH
Q 040319 382 CGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD-EIALTSVLGVCGTLGFHEMGKQ 459 (812)
Q Consensus 382 ~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~ 459 (812)
.|++++|.+.|+++... +++...+..+...+...|++++|++.|+++.. ..|+ ..++..+...+...|+++.|..
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~ 190 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE---TQPNFAVAWSNLGCVFNAQGEIWLAIH 190 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666654422 22344555666666666777777777777665 3343 3456666666667777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 040319 460 IHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIK 536 (812)
Q Consensus 460 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 536 (812)
.+..+++.. +.+...+..+...|...|++++|...|++... .+..+|+.+...|...|++++|++.|+++.+ ..
T Consensus 191 ~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~ 267 (388)
T 1w3b_A 191 HFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQ 267 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TC
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC
Confidence 777766654 23456677778888888888888888776543 3467788888888888888888888888888 56
Q ss_pred CCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 040319 537 PDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWR 613 (812)
Q Consensus 537 pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 613 (812)
|+. .++..+..++.. .|++++|.+.|+.+.+. .+++...|..++.++.+.|++++|.+.++++. ..| +..+|.
T Consensus 268 p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 268 PHFPDAYCNLANALKE--KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp SSCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 654 567777777777 88888888888888762 23457788888888888888888888888865 445 567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 614 ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 614 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
.+...+...|+.++|...++++++++|+++.+|..++.+|.+.|+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 888888888888888888888888888888888888888877664
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=4e-23 Score=223.00 Aligned_cols=352 Identities=14% Similarity=0.094 Sum_probs=304.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCC
Q 040319 306 LAGYCKNGKAMEALGLFVKLLEEGLVLTEF-TLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGR 384 (812)
Q Consensus 306 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 384 (812)
...+.+.|++++|+..+.++.+. .|+.. .+..+...+...++++.+...+..+++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45677889999999999998875 45544 44455556778899999999998888754 4577899999999999999
Q ss_pred HHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhh-HHHHHHHhcCccchHHHHHHHH
Q 040319 385 MADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIA-LTSVLGVCGTLGFHEMGKQIHS 462 (812)
Q Consensus 385 ~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~ 462 (812)
+++|...|+++... +++..+|..+...+.+.|++++|++.|.++.. ..|+... +..+...+...|++++|...+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---HCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999987532 34466799999999999999999999999987 5677664 4556677888999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 040319 463 YALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA 539 (812)
Q Consensus 463 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 539 (812)
.+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+ +.|+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 999864 34678899999999999999999999998764 4567899999999999999999999999998 67864
Q ss_pred -HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHH
Q 040319 540 -ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRAL 615 (812)
Q Consensus 540 -~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~l 615 (812)
.++..+..++.. .|++++|.+.|+.+.+ +.|+ ...|..++.++.+.|++++|.+.++++. .+++..+|..+
T Consensus 237 ~~~~~~l~~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 237 AVVHGNLACVYYE--QGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 778888888888 9999999999999987 3454 6789999999999999999999999976 34578899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 616 LDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 616 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...+...|+.++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999864
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=8.6e-22 Score=217.05 Aligned_cols=347 Identities=11% Similarity=0.024 Sum_probs=244.6
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHH
Q 040319 298 NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLD 377 (812)
Q Consensus 298 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 377 (812)
+...|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45568888888899999999999999888752 2234455555555555555555555555555443 123444455555
Q ss_pred HHHhcCCHHHHHHHHhcCCCC-CCce---eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccc
Q 040319 378 MLTRCGRMADAEKMFYRWPTD-RDDS---IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGF 453 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~-~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~ 453 (812)
.|.+.|++++|.+.|+++... +++. ..|..++..+...+ +..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR------------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH------------------------HHHHHHHHHHcCC
Confidence 555555555555555544311 1112 33333333211100 1111223455666
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 040319 454 HEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSM 530 (812)
Q Consensus 454 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 530 (812)
++.|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|+.++..|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777766643 34677888899999999999999999998764 56889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHH-H------------HHHhcCCCCchHHHHHHHHHHhhhhcCccCC-----cchHHHHHHHHhhcCC
Q 040319 531 EKASIKPDAITFVL-I------------ISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-----SEHYASLVSVLGYWGF 592 (812)
Q Consensus 531 ~~~g~~pd~~t~~~-l------------l~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~~g~ 592 (812)
.+ ..|+...... + ..+|.. .|++++|..+|+.+.+ +.|+ ..+|..++.++.+.|+
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIR--DGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCC
Confidence 98 6787655432 2 567888 9999999999999987 3455 4589999999999999
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH------------hhhhhCC-
Q 040319 593 LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS------------NLYSSSG- 657 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~y~~~g- 657 (812)
+++|++.++++. ..| +..+|..+..+|...|+.+.|...++++++++|+++..+..++ +.|...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999999965 445 6889999999999999999999999999999999999999999 7788888
Q ss_pred -CcchHHHHHHHHHhCCCCCCC
Q 040319 658 -RWHNSELVREDMREKGFRKHP 678 (812)
Q Consensus 658 -~~~~a~~~~~~m~~~g~~~~~ 678 (812)
++....++++.+++..++..|
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCG
T ss_pred CccCCHHHHHHHHHHHHHHhCC
Confidence 333334444444433333333
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.2e-21 Score=215.44 Aligned_cols=445 Identities=11% Similarity=-0.010 Sum_probs=213.2
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 167 VSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGF 246 (812)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 246 (812)
..|......+.+.|++++|+..|+++... .||..++..+..++...|+++.|.+.+..+++.. +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34556667788888888888888888332 2677777778888888888888888888887765 4456677777788
Q ss_pred HHhcCChHHHHHHHhcCC---CCcchhHHHHHHHHHhhCChhHHHHHhccCCC----CCcccHHHHHHHHHhCCChHHHH
Q 040319 247 YTKCGRVKDVVALLERMP---VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE----KNSVSYNALLAGYCKNGKAMEAL 319 (812)
Q Consensus 247 ~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~ 319 (812)
|.+.|++++|...|+++. ..+......++..+........+.+.+..+.. ++...++.-...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------- 151 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER----------- 151 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH-----------
Confidence 888888888887666542 11222222233322222222222222221111 011100000000
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHh---cCCHHHHHHHHhcCC
Q 040319 320 GLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTR---CGRMADAEKMFYRWP 396 (812)
Q Consensus 320 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~ 396 (812)
.......|+.......+..+........ ..-+.+...+..+...+.. .|++++|...|+++.
T Consensus 152 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 152 -----KDKQENLPSVTSMASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred -----HhhccCCchhHHHHHHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 0001112222222211111111000000 0001112222222222222 555666655555443
Q ss_pred C--------C-------CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHH
Q 040319 397 T--------D-------RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIH 461 (812)
Q Consensus 397 ~--------~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 461 (812)
. . +.+..+|..+...+...|++++|+..|+++.. ..|+...+..+...+...|+++.|...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE---LFPRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1 0 11233455555566666666666666666554 2233334444445555555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 462 SYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 462 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+ ..|+
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hccc
Confidence 5554432 22344455555555555555555555554321 2344555555555555555555555555555 2332
Q ss_pred -HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhh---cCChHHHHHHHHhCC-CCC-C
Q 040319 539 -AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGY---WGFLEEAEETINNMP-FQP-K 608 (812)
Q Consensus 539 -~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~---~g~~~~A~~~~~~m~-~~p-~ 608 (812)
..++..+...+.. .|++++|...|+.+.+...-.|+ ...|..++.++.+ .|++++|.+.++++. ..| +
T Consensus 371 ~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 371 APEVPNFFAEILTD--KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp CSHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 2444444444545 55555555555555431111111 1255555555555 555555555555532 222 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
..+|..+...+...|+.+.|...++++++++|+++..+..+
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 44555555555555555555555555555555544444333
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.4e-21 Score=213.90 Aligned_cols=420 Identities=10% Similarity=0.002 Sum_probs=282.8
Q ss_pred HHHHHhcCChHHHHHHHhcCC--CCcchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHH
Q 040319 244 IGFYTKCGRVKDVVALLERMP--VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEA 318 (812)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A 318 (812)
...|.+.|++++|...|+++. .|+...|..+..+|.+.|++++|+..|+++.+ .+...|..+..+|.+.|++++|
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444444444444432 23344444444444444444444445554432 3455777888888888888888
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHH---HHHHHhcCCHHHHHHHHhcC
Q 040319 319 LGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAAL---LDMLTRCGRMADAEKMFYRW 395 (812)
Q Consensus 319 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L---i~~y~~~g~~~~A~~~f~~~ 395 (812)
...|+++...+. ++......++..+..........+.++.+...+..|+......- ............+...+...
T Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 888888887653 34444444444443333333333333222222111111100000 00011111112222222222
Q ss_pred CC--------CCCceeeeHHHHHHHHH---cCChhhHHHHHHHhcc-----cCCC-------CCChhhHHHHHHHhcCcc
Q 040319 396 PT--------DRDDSIIWTSMICGYAR---SGKPEHAILLFHQSQS-----EATV-------VPDEIALTSVLGVCGTLG 452 (812)
Q Consensus 396 ~~--------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~g~-------~p~~~t~~~ll~a~~~~~ 452 (812)
.. .+++...|......+.. .|++++|+..|+++.. .... ..+..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 21 11223334444444444 8999999999999875 1111 122346667778889999
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSS 529 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 529 (812)
+++.|...+..+.+.... ..++..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|+..|++
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999987644 88889999999999999999999987654 4678899999999999999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC
Q 040319 530 MEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP 607 (812)
Q Consensus 530 m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p 607 (812)
+.+ ..|+ ..++..+...+.. .|++++|..+|+.+.+.. +.+...|..+..++.+.|++++|.+.++++. ..|
T Consensus 330 ~~~--~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 330 AKE--LDPENIFPYIQLACLAYR--ENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHH--TCSSCSHHHHHHHHHTTT--TTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHH--hChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 999 5565 4778888888888 999999999999988631 2347889999999999999999999998864 222
Q ss_pred ---C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 608 ---K----VSVWRALLDSCRI---RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 608 ---~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+ ..+|..+...+.. .|+.+.|...++++++++|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 3388889999999 999999999999999999999999999999999999999999999988653
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=4e-19 Score=200.51 Aligned_cols=421 Identities=8% Similarity=-0.010 Sum_probs=234.9
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 166 TVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIG 245 (812)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 245 (812)
...|..+...+.+.|++++|++.|+.+.... +.+..++..+..++...|+++.|.+.+..+++.. +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4566677777777778888887777773321 2233445555555556666666666666665543 334445555555
Q ss_pred HHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 040319 246 FYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKL 325 (812)
Q Consensus 246 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 325 (812)
.|...|++++|.. .|+.+ ..++...+..+..+...+...+|...++++
T Consensus 102 ~~~~~g~~~~A~~-------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (537)
T 3fp2_A 102 ANESLGNFTDAMF-------------------------------DLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNEN 149 (537)
T ss_dssp HHHHHTCHHHHHH-------------------------------HHHHH-C-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHH-------------------------------HHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555 43321 111111122222333334445555555555
Q ss_pred HHc------CCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 040319 326 LEE------GLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDR 399 (812)
Q Consensus 326 ~~~------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 399 (812)
... ...|+...+. .|....+.+.+...+.......
T Consensus 150 l~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 150 LSKDEGRGSQVLPSNTSLA---------------------------------------SFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp CC-------CCCCCHHHHH---------------------------------------HHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHhCccccccccchHhHHH---------------------------------------HHHHhcChHHHHHHHhhccccc
Confidence 332 1223322222 2333344444444443333111
Q ss_pred Cce-eeeHHHHHHHH--------HcCChhhHHHHHHHhcccCCCCCCh--------hhHHHHHHHhcCccchHHHHHHHH
Q 040319 400 DDS-IIWTSMICGYA--------RSGKPEHAILLFHQSQSEATVVPDE--------IALTSVLGVCGTLGFHEMGKQIHS 462 (812)
Q Consensus 400 ~~~-~~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~g~~p~~--------~t~~~ll~a~~~~~~~~~a~~~~~ 462 (812)
+.. ..+..+...+. ..|++++|+.+|+++.. ..|+. .++..+...+...|+++.|...+.
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS---ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 100 01111111111 11355666666666654 33332 123333344555566666666666
Q ss_pred HHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 040319 463 YALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA 539 (812)
Q Consensus 463 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 539 (812)
.+.+.. |+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+ ..|+.
T Consensus 268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~ 343 (537)
T 3fp2_A 268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPEN 343 (537)
T ss_dssp HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCC
Confidence 666543 3355666666777777777777777765543 3456677777777777777777777777777 44543
Q ss_pred -HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-------CHH
Q 040319 540 -ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-------KVS 610 (812)
Q Consensus 540 -~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-------~~~ 610 (812)
..+..+...+.. .|++++|..+|+.+.+.. +.+...|..+..++.+.|++++|.+.++++. ..| ...
T Consensus 344 ~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 344 VYPYIQLACLLYK--QGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp SHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 556666666666 777777777777776521 2235577777777777788777777777643 111 112
Q ss_pred HHHHHHHHHHhc----------CCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 611 VWRALLDSCRIR----------LNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 611 ~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+..+...+... |+++.|...++++++++|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 233344455666 8888888888888888888888888888888888888888888887754
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=2.6e-19 Score=197.17 Aligned_cols=355 Identities=11% Similarity=0.051 Sum_probs=215.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 040319 234 GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNG 313 (812)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 313 (812)
+.+...+..+...|.+.|++++|..+|+++.. ....+..+|..+..+|.+.|
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----------------------------~~p~~~~~~~~l~~~~~~~g 74 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD----------------------------GDPDNYIAYYRRATVFLAMG 74 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------hCCccHHHHHHHHHHHHHCC
Confidence 34556666677777777777777775554321 01134445555666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCch---hHHHHHHHH------------
Q 040319 314 KAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSND---CIEAALLDM------------ 378 (812)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~Li~~------------ 378 (812)
++++|+..|+++.+.+ +.+...+..+...+...|+++.|...+..+.+... .+. .++..+...
T Consensus 75 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 75 KSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665543 12344555555556666666666666666655321 233 555555444
Q ss_pred HHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHH
Q 040319 379 LTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMG 457 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a 457 (812)
|.+.|++++|...|+++... +.+...|..+...|.+.|++++|++.|+++.. ..
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~---------------------- 207 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK---LK---------------------- 207 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH---HH----------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hC----------------------
Confidence 66666666666666654311 23345566666666666666666666666554 11
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-ChhHHHHH------------HHHHHhcCChHH
Q 040319 458 KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-DIVSWNGL------------IAGHLLHRQGDE 522 (812)
Q Consensus 458 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~l------------i~~~~~~g~~~~ 522 (812)
+.+..++..+...|.+.|++++|...|+++.. | +...|..+ ...|...|++++
T Consensus 208 ------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (450)
T 2y4t_A 208 ------------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275 (450)
T ss_dssp ------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 22344555555556666666666666555432 2 22333333 777888888888
Q ss_pred HHHHHHHHHHCCCCCCH-----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHH
Q 040319 523 ALAVWSSMEKASIKPDA-----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 523 A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A 596 (812)
|+..|+++.+ +.|+. ..+..+..++.. .|++++|...++.+.+ +.| +...|..+..+|...|++++|
T Consensus 276 A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 276 ATSKYESVMK--TEPSIAEYTVRSKERICHCFSK--DEKPVEAIRVCSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp HHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888 56663 356666777777 8888888888888765 234 467888888888888888888
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHccCCCCCc----------hH
Q 040319 597 EETINNMP-FQP-KVSVWRALLDS------------CRIRL-----NTTIGKRVAKH-ILAMEPQDPA----------TY 646 (812)
Q Consensus 597 ~~~~~~m~-~~p-~~~~~~~ll~~------------~~~~~-----~~~~a~~~~~~-~~~~~p~~~~----------~~ 646 (812)
.+.++++. ..| +..++..+..+ |...| +.+++.+.+++ +++..|++.. .+
T Consensus 349 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~ 428 (450)
T 2y4t_A 349 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 428 (450)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHH
Confidence 88888754 566 45566555533 22333 55677888876 7888887432 33
Q ss_pred HHHHhhhhhCCCcchH
Q 040319 647 ILVSNLYSSSGRWHNS 662 (812)
Q Consensus 647 ~~l~~~y~~~g~~~~a 662 (812)
..+...|...|+-+.+
T Consensus 429 ~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 429 IDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHhCCHHHH
Confidence 4455556555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=5.2e-19 Score=199.58 Aligned_cols=436 Identities=10% Similarity=0.011 Sum_probs=305.6
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHH
Q 040319 134 VFVTNALMGLYGKFSFCLDYLLKLFDELP---HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLT 210 (812)
Q Consensus 134 ~~~~~~li~~y~~~g~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 210 (812)
...+..+-..|.+.| +++.|.+.|+++. +.+..+|..+...|.+.|++++|++.|+.+.... +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAK-NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 456677788889999 9999999999875 3578899999999999999999999999984332 334567888888
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC------cchhHHHHHHHHHhhCCh
Q 040319 211 ACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVM------DIITLTEIIIAYMEFGYV 284 (812)
Q Consensus 211 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~~~~~~li~~~~~~g~~ 284 (812)
++...|++++|...+. .+. ..|+ ..+..+..+...+....|...++.+... ........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLS--LNGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHh--cCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 8999999999999996 332 2222 2223344555556667777766665321 112223334444445555
Q ss_pred hHHHHHhccCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHH
Q 040319 285 DLAVEIFDKMPEKNSV---SYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVM 361 (812)
Q Consensus 285 ~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 361 (812)
+.+...+.+....+.. .+..+...+... .++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------------~~~------------ 210 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSAT----------------------------------DEG------------ 210 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCS----------------------------------HHH------------
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhh----------------------------------hhh------------
Confidence 5555444444332221 111111111000 000
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-c-------eeeeHHHHHHHHHcCChhhHHHHHHHhcccCC
Q 040319 362 KFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-D-------SIIWTSMICGYARSGKPEHAILLFHQSQSEAT 433 (812)
Q Consensus 362 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 433 (812)
.....|++++|..+|+++....| + ..+|..+...+...|++++|+..|.+...
T Consensus 211 ----------------~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--- 271 (537)
T 3fp2_A 211 ----------------YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN--- 271 (537)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh---
Confidence 01112345556666655442222 1 12355666778888999999999999887
Q ss_pred CCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHH
Q 040319 434 VVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGL 510 (812)
Q Consensus 434 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~l 510 (812)
..|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 350 (537)
T 3fp2_A 272 LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350 (537)
T ss_dssp HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHH
T ss_pred cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56777778888888999999999999999988865 34677899999999999999999999988754 456789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHH
Q 040319 511 IAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVS 585 (812)
Q Consensus 511 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~ 585 (812)
...|...|++++|++.|+++.+ ..|+. ..+..+...+.. .|++++|.+.|+.+.+...-.+. ...+..+..
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTD--RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH--hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999998 55664 677778888888 99999999999998763211111 222455567
Q ss_pred HHhhc----------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 040319 586 VLGYW----------GFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYI 647 (812)
Q Consensus 586 ~l~~~----------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 647 (812)
++.+. |++++|...+++.. ..| +..+|..+...+...|+.+.|...+++++++.|+++....
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 78888 99999999999865 445 6788999999999999999999999999999998766544
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.9e-15 Score=174.84 Aligned_cols=576 Identities=10% Similarity=0.054 Sum_probs=388.7
Q ss_pred cCCCccchHHHHHHHHccCChhhHHHHHhcCCC---------------CC----------------hhhH------HHHH
Q 040319 29 LEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS---------------PN----------------VVSF------TSLI 71 (812)
Q Consensus 29 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------------~~----------------~~~~------~~li 71 (812)
+..|+.+....|.+.++.|.+.+..++..+-.- +| .+.| ...|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 466889999999999999999999988765320 11 1111 2345
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHH-------------HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHH
Q 040319 72 SGLAKLGREEEAIELFFRMRSEGIVPNEHSFV-------------AILTACIRLLELELGFQIHALIVKMGCVDSVFVTN 138 (812)
Q Consensus 72 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 138 (812)
..|.+.-++..+-.+.-.++..+ -+..... .|+..+-+.+++......++.-+..| ..++.++|
T Consensus 801 e~yv~~vnp~~~p~Vvg~lld~d--~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hn 877 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPVVIGGLLDVD--CSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHN 877 (1630)
T ss_pred HHHHhccCCcccchhhhhhhcCC--CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 55555555554444444443322 2222333 33333444444555555566666667 57889999
Q ss_pred HHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcC----CCCCCcchHHHHHHHHhc
Q 040319 139 ALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDN----GFTVDYFTISTLLTACTG 214 (812)
Q Consensus 139 ~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----g~~pd~~t~~~ll~~~~~ 214 (812)
+|...|...+.+.+.-.+ + |..-=..++.-||...|+.-|.-.|++= ... .+.-....|-...+-+.+
T Consensus 878 alakiyid~n~npe~fL~---~----n~~yd~~~vgkyce~rDp~la~iay~~g-~~d~eli~vt~~n~l~k~~arylv~ 949 (1630)
T 1xi4_A 878 ALAKIYIDSNNNPERFLR---E----NPYYDSRVVGKYCEKRDPHLACVAYERG-QCDLELINVCNENSLFKSLSRYLVR 949 (1630)
T ss_pred HHHHHHhccCCCHHHHhh---c----cCcccHHHHHHHHHhcCcchHHHHhccc-CCcHHHHHHHhcchhHHHHHHHHHH
Confidence 999999877644443221 1 1111111233344444444333333210 000 001111112222222222
Q ss_pred CCCh-----------HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHhcCC-CC-----cchhHHHHH
Q 040319 215 CFVL-----------MEGRAVHAHAIRIGL--GANLSVNNALIGFYTKCGRVKDVVALLERMP-VM-----DIITLTEII 275 (812)
Q Consensus 215 ~~~~-----------~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~-~~-----~~~~~~~li 275 (812)
..+. +.=+++.++.....+ ..++.-....+..|...|.+.+|.+++++.. .+ +....+.++
T Consensus 950 r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi 1029 (1630)
T 1xi4_A 950 RKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLI 1029 (1630)
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHH
Confidence 2222 222344444443332 2344445677888999999999999999985 22 235566677
Q ss_pred HHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHH
Q 040319 276 IAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQ 355 (812)
Q Consensus 276 ~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 355 (812)
.+..+. +..+..+...+...-+ ...+...+...|++++|..+|++.. -.......++. ..++++.|.+
T Consensus 1030 ~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE 1097 (1630)
T 1xi4_A 1030 LTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYE 1097 (1630)
T ss_pred HHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHH
Confidence 777766 4466666665555333 4557788899999999999999852 11122233333 5677888888
Q ss_pred HHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCC
Q 040319 356 IHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVV 435 (812)
Q Consensus 356 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~ 435 (812)
+...+ .+..+|..+..++.+.|++++|.+.|.+.. |...|..++..+.+.|++++|++.|...++ ..
T Consensus 1098 ~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKAd----D~say~eVa~~~~~lGkyEEAIeyL~mArk---~~ 1164 (1630)
T 1xi4_A 1098 FAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARK---KA 1164 (1630)
T ss_pred HHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hc
Confidence 87754 457889999999999999999999997653 477888999999999999999999988776 33
Q ss_pred CChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 040319 436 PDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHL 515 (812)
Q Consensus 436 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 515 (812)
++....+.+.-+|++.+.++....+. + .++...+..+.+.|...|++++|..+|... ..|..+...|.
T Consensus 1165 ~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1165 RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLV 1232 (1630)
T ss_pred ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHH
Confidence 45444456888899998888655442 2 345566777999999999999999999986 58999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHH
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEE 595 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~ 595 (812)
+.|++++|++.+++. -+..+|..+-.+|.. .|.+..|...... +..+++.+..++..|.+.|.+++
T Consensus 1233 kLge~q~AIEaarKA------~n~~aWkev~~acve--~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKA------NSTRTWKEVCFACVD--GKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh--hhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999987 345889999999988 9999999887643 34567788899999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHccCC-----CCCchHHHHHhhhhhCCCcchHHHHH
Q 040319 596 AEETINNMP-FQP-KVSVWRALLDSCRI--RLNTTIGKRVAKHILAMEP-----QDPATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 596 A~~~~~~m~-~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
|+.+++... ++| ....|.-|..++.+ -+++.++.+.+..-..+.| +++..|.-++-+|.+.|+|+.|....
T Consensus 1299 AI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1299 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999998854 555 34566556555554 4677777888888777766 67888999999999999999998643
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=4.1e-15 Score=172.12 Aligned_cols=520 Identities=12% Similarity=0.050 Sum_probs=359.4
Q ss_pred hHHhHhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCCCChhhHH-HHHHHHHhcCChhH
Q 040319 4 SLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFT-SLISGLAKLGREEE 82 (812)
Q Consensus 4 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~ 82 (812)
|+..+-+.+++..-...++..+..| ..++.++|+|...|...++-. .+.+.+=+ -|. .++.-||...++.-
T Consensus 845 lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~np--e~fL~~n~-----~yd~~~vgkyce~rDp~l 916 (1630)
T 1xi4_A 845 LVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNP--ERFLRENP-----YYDSRVVGKYCEKRDPHL 916 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCH--HHHhhccC-----cccHHHHHHHHHhcCcch
Confidence 4455555666666666677777777 568889999999998765422 22222211 132 35667888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhc--
Q 040319 83 AIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDE-- 160 (812)
Q Consensus 83 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~-- 160 (812)
|.-.|++ |- -| .-|++.+.+.+-+..-- +.+++ ..|+..|+.++.- +-+.=+.+.+.
T Consensus 917 a~iay~~----g~-~d----~eli~vt~~n~l~k~~a---rylv~---r~d~~lW~~vl~~------~n~~RR~Lidqv~ 975 (1630)
T 1xi4_A 917 ACVAYER----GQ-CD----LELINVCNENSLFKSLS---RYLVR---RKDPELWGSVLLE------SNPYRRPLIDQVV 975 (1630)
T ss_pred HHHHhcc----cC-Cc----HHHHHHHhcchhHHHHH---HHHHH---hcCHHHHHHHhcC------CcHHHHHHHHHHH
Confidence 8877775 31 11 23555555555444321 12222 2455566655521 11122223322
Q ss_pred ---CC-CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCC--CCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 040319 161 ---LP-HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGF--TVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLG 234 (812)
Q Consensus 161 ---~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~--~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 234 (812)
.+ ..|+.--...+++|...|.+.+|+++++.. ...+- .-+...-+.++.+..+. +...+.++....-
T Consensus 976 a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKi-vl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd----- 1048 (1630)
T 1xi4_A 976 QTALSETQDPEEVSVTVKAFMTADLPNELIELLEKI-VLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD----- 1048 (1630)
T ss_pred HhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHH-HcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-----
Confidence 12 123344466789999999999999999998 33211 01112223344444444 5555555554443
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 040319 235 ANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGK 314 (812)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 314 (812)
......+...+...|.+++|..+|++.... ....+.+ +-..+++++|.++.++.. +..+|..+..++.+.|+
T Consensus 1049 --~~d~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1049 --NYDAPDIANIAISNELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred --hccHHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCC
Confidence 122444677888899999999999997522 1222222 227889999999998774 46788899999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 040319 315 AMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYR 394 (812)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 394 (812)
+++|++.|.+. -|...|.-+..+|.+.|+++.+.+.+....+.. +++.+.+.++.+|++.+++++.....+
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~- 1191 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN- 1191 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-
Confidence 99999999663 567788889999999999999999999888765 454555569999999999986544432
Q ss_pred CCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchh
Q 040319 395 WPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLG 474 (812)
Q Consensus 395 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 474 (812)
..+ ...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+..+.. .+..
T Consensus 1192 ---~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1192 ---GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred ---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 223 566777888999999999999999874 37889999999999999999988776 4668
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCC
Q 040319 475 VANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTN 553 (812)
Q Consensus 475 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~ 553 (812)
+|..+..++...|++..|...... ...+...+..++..|...|.+++|+.+++..+. +.|.. ..|.-+..++++.+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCC
Confidence 888888889999999999988765 334555677899999999999999999988876 55555 34544444444434
Q ss_pred CchHHHHHHHHHHhhhhcCccC------CcchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP------TSEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p------~~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
.+++.++.++|.+-. +++| +..+|.-++.+|.+.|+++.|...+-+
T Consensus 1329 peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 888888888887543 3444 467899999999999999999865544
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=6.7e-17 Score=171.58 Aligned_cols=310 Identities=11% Similarity=-0.023 Sum_probs=208.4
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHH
Q 040319 299 SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDM 378 (812)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 378 (812)
+..|..+...+...|++++|+..|+++.+... .+..++ ..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~-----------------------------------~~~a~~ 46 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAY-----------------------------------YRRATV 46 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHH-----------------------------------HHHHHH
Confidence 34566777788888888888888888877431 122333 334444
Q ss_pred HHhcCCHHHHHHHHhcCCC-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC---Chh-hHHHH---------
Q 040319 379 LTRCGRMADAEKMFYRWPT-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP---DEI-ALTSV--------- 444 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p---~~~-t~~~l--------- 444 (812)
|...|++++|...|+++.. .+.+...|..+...|...|++++|+..|++... ..| +.. .+..+
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHH
Confidence 5555555555555544331 122344555555666666666666666666554 334 222 12111
Q ss_pred ---HHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcC
Q 040319 445 ---LGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHR 518 (812)
Q Consensus 445 ---l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 518 (812)
...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 345566677777777777776654 34567778888888889999999888887654 56678888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH-HH------------HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCc-----chH
Q 040319 519 QGDEALAVWSSMEKASIKPDAIT-FV------------LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS-----EHY 580 (812)
Q Consensus 519 ~~~~A~~l~~~m~~~g~~pd~~t-~~------------~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y 580 (812)
++++|+..|++..+ ..|+... +. .+...+.. .|++++|...|+.+.+. .|+. ..|
T Consensus 203 ~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 275 (359)
T 3ieg_A 203 DHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIR--DGRYTDATSKYESVMKT---EPSVAEYTVRSK 275 (359)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH---CCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhc---CCCchHHHHHHH
Confidence 99999999999888 5666533 21 12334556 78888888888887763 3442 235
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
..+..++.+.|++++|.+.+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..+..++..
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 567788888888888888888754 344 677888888888888888888888888888888888777777666543
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.8e-17 Score=172.98 Aligned_cols=322 Identities=15% Similarity=0.082 Sum_probs=160.9
Q ss_pred hCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhH
Q 040319 281 FGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFV 360 (812)
Q Consensus 281 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 360 (812)
.|++++|.+.++++..|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|+++++..++...
T Consensus 16 ~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344555555666664443 677777777777777777777754 256667777777777777777777766666
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhh
Q 040319 361 MKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIA 440 (812)
Q Consensus 361 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t 440 (812)
++. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n 150 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SN 150 (449)
T ss_dssp -----------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT----------TC
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hh
Confidence 663 44577888899999999999998888753 34679999999999999999999999876 36
Q ss_pred HHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCCh
Q 040319 441 LTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQG 520 (812)
Q Consensus 441 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 520 (812)
|..+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 889999999999999999998877 378999999999999999999988877665 4444455799999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC------CcchHHHHHHHHhhcCCh
Q 040319 521 DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP------TSEHYASLVSVLGYWGFL 593 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~y~~li~~l~~~g~~ 593 (812)
++|+.+++..+. ..|-. ..|+.+--++++-+.+.+.+..+.|.+- -+++| +..+|.-++.+|..-|++
T Consensus 224 eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 224 EELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999886 44544 5555555555554478888888877643 34666 588999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 594 EEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 594 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
+.|...+-+-+ |++.--..+.....+-.|.|.--++..--++..|.
T Consensus 299 d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 299 DNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp HHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 99988766643 23222333444555666666665555555555553
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.5e-17 Score=170.82 Aligned_cols=287 Identities=12% Similarity=0.083 Sum_probs=101.4
Q ss_pred ccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 040319 45 KLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHAL 124 (812)
Q Consensus 45 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 124 (812)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7788999999999997775 899999999999999999999975 36888999999999999999999998888
Q ss_pred HHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcch
Q 040319 125 IVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFT 204 (812)
Q Consensus 125 ~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 204 (812)
.++. .+++.+.+.|+.+|.++| +++++.++++. |+..+|+.+...|...|.+++|...|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg-~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTN-RLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TC
T ss_pred HHHh--CccchhHHHHHHHHHHhC-CHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hh
Confidence 8774 566888999999999999 99999988864 77789999999999999999999999977 25
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCCh
Q 040319 205 ISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYV 284 (812)
Q Consensus 205 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~ 284 (812)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--------------------- 203 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--------------------- 203 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT---------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH---------------------
Confidence 677777777777777776666655 25666666666666666666666543332
Q ss_pred hHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHh
Q 040319 285 DLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEG-LVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKF 363 (812)
Q Consensus 285 ~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 363 (812)
. .++.....++..|.+.|++++|+.+++..+... -.-..+|...++-+--+.+.+.+..+.|.. +.
T Consensus 204 ----------~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~i 270 (449)
T 1b89_A 204 ----------V-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RV 270 (449)
T ss_dssp ----------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TS
T ss_pred ----------H-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--Hh
Confidence 2 222222335555555555555555555554322 011112222222222333333333333321 11
Q ss_pred cCCC------chhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 040319 364 GLGS------NDCIEAALLDMLTRCGRMADAEKMFYRW 395 (812)
Q Consensus 364 g~~~------~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 395 (812)
+++| +...|.-++-.|.+.++++.|....-+-
T Consensus 271 ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 271 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 1111 3556777888888888888887665443
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.75 E-value=2.4e-16 Score=167.32 Aligned_cols=293 Identities=15% Similarity=0.082 Sum_probs=241.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHH
Q 040319 369 DCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLG 446 (812)
Q Consensus 369 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~ 446 (812)
+..+..+...|.+.|++++|...|+++... +++..+|..+...+...|++++|+..|+++.. ..| +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA---LKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCcchHHHHHHH
Confidence 445667778889999999999999886422 44577899999999999999999999999987 455 4456777888
Q ss_pred HhcCccchHHHHHHHHHHHHhCCC--CchhHHHHH------------HHHhhhcCCHHHHHHHHccCCC---CChhHHHH
Q 040319 447 VCGTLGFHEMGKQIHSYALKTGFS--SDLGVANSM------------VSMYFKCCNMSNAIKAFNKMPS---HDIVSWNG 509 (812)
Q Consensus 447 a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~L------------i~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~ 509 (812)
.+...|+++.|...+..+.+.... .+...+..+ ...|...|++++|...|+++.+ .+...|..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 899999999999999999875420 244455444 5889999999999999998754 56788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHH------
Q 040319 510 LIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYA------ 581 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~------ 581 (812)
+...|...|++++|+..++++.+ ..|+ ..++..+...+.. .|++++|...|+...+ ..|+ ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQ--LGDHELSLSEVRECLK---LDQDHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh---hCccchHHHHHHHHHH
Confidence 99999999999999999999998 5565 4677778888888 9999999999999886 3344 22222
Q ss_pred ------HHHHHHhhcCChHHHHHHHHhCC-CCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 582 ------SLVSVLGYWGFLEEAEETINNMP-FQPK-VS----VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 582 ------~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
.++..+.+.|++++|.+.++++. ..|+ .. .+..+...+...|+.+.|...++++++++|+++..+..+
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 33777999999999999999865 3454 32 344566788999999999999999999999999999999
Q ss_pred HhhhhhCCCcchHHHHHHHHHh
Q 040319 650 SNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.+|...|++++|.+.+++..+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.5e-16 Score=165.04 Aligned_cols=287 Identities=12% Similarity=-0.022 Sum_probs=219.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC-hhhHHH
Q 040319 366 GSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD-EIALTS 443 (812)
Q Consensus 366 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~t~~~ 443 (812)
+.+..+...+...+...|++++|.++|+++... +.+...+..++..+...|++++|+..+.++.. ..|+ ...+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~ 95 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD---LYPSNPVSWFA 95 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH---hCcCCHHHHHH
Confidence 445566667777788888888888888776422 33355666677788888888888888888876 3443 345666
Q ss_pred HHHHhcCcc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCC
Q 040319 444 VLGVCGTLG-FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ 519 (812)
Q Consensus 444 ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 519 (812)
+...+...| .++.|...+..+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 667777778 7888888888887654 33567788888899999999999998887654 345777788888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcC-------ccCCcchHHHHHHHHhhcC
Q 040319 520 GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYN-------IEPTSEHYASLVSVLGYWG 591 (812)
Q Consensus 520 ~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~y~~li~~l~~~g 591 (812)
+++|++.|++..+ ..|+. ..+..+...+.. .|++++|..+|+.+.+... .......|..+..++.+.|
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQ--NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH--cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 9999999999988 55654 667777777878 8999999999988776321 1333678889999999999
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh-hhCCCcc
Q 040319 592 FLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY-SSSGRWH 660 (812)
Q Consensus 592 ~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~ 660 (812)
++++|.+.+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+| ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999988864 344 5678888888899999999999999999999999999999999888 4555543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=2.3e-14 Score=160.98 Aligned_cols=410 Identities=10% Similarity=-0.022 Sum_probs=249.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CcchhHHHHHHHHHhhCChhHHHHHhccCCC--CCcccHHHHHH-
Q 040319 234 GANLSVNNALIGFYTKCGRVKDVVALLERMPV---MDIITLTEIIIAYMEFGYVDLAVEIFDKMPE--KNSVSYNALLA- 307 (812)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~li~- 307 (812)
+.+...|..++. +.+.|+++.|..+|+++.. .+...|...+..+.+.|++++|..+|++... |++..|...+.
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 335556666665 3556666666666666532 2334566666666666666666667766554 45555555553
Q ss_pred HHHhCCChHHHHH----HHHHHHHc-CCCCCH-hHHHHHHHHhc---------cchhhhhHHHHHhhHHHhcCCCchhHH
Q 040319 308 GYCKNGKAMEALG----LFVKLLEE-GLVLTE-FTLTSVVNACG---------LIMEAKLSEQIHGFVMKFGLGSNDCIE 372 (812)
Q Consensus 308 ~~~~~g~~~~A~~----l~~~m~~~-g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~ 372 (812)
.....|+.++|.+ +|++.+.. |..|+. ..+...+.... ..++.+.+..++..+++........++
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2234566655544 55555442 444432 22333332221 145555566666555552111111122
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHH------hcccC--CCCCCh------
Q 040319 373 AALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQ------SQSEA--TVVPDE------ 438 (812)
Q Consensus 373 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~~--g~~p~~------ 438 (812)
..........|. ..+..++. .+.+++.+|..++.+ ..+.. .+.|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 211111100000 00111110 012345556555554 22100 123331
Q ss_pred --hhHHHHHHHhcC----ccch----HHHHHHHHHHHHhCCCCchhHHHHHHHHhhh-------cCCHH-------HHHH
Q 040319 439 --IALTSVLGVCGT----LGFH----EMGKQIHSYALKTGFSSDLGVANSMVSMYFK-------CCNMS-------NAIK 494 (812)
Q Consensus 439 --~t~~~ll~a~~~----~~~~----~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k-------~g~~~-------~A~~ 494 (812)
..|...+..... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 233333322111 1222 35666777777653 4467788888888875 68887 8999
Q ss_pred HHccCCC---C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 495 AFNKMPS---H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 495 ~f~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
+|++..+ | +...|..++..+.+.|++++|.++|+++++ +.|+. ..|......+.+ .|++++|.++|+...
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARR--AEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHH--hcCHHHHHHHHHHHH
Confidence 9987653 4 478899999999999999999999999999 67764 467777777777 899999999999988
Q ss_pred hhcCccCC-cchHHHHHHH-HhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 040319 569 TIYNIEPT-SEHYASLVSV-LGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 569 ~~~~~~p~-~~~y~~li~~-l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 644 (812)
+. .|. ...|...+.+ +...|+.++|..+|++.. ..| +..+|..++......|+.+.|+.+++++++..|.++.
T Consensus 384 ~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 384 ED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp TC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred hc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 62 333 3333332222 336899999999998754 445 6789999999999999999999999999998877665
Q ss_pred ----hHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 645 ----TYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 645 ----~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
.+...+......|+.+++..+.+++.+.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777788888899999999998888653
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=7e-16 Score=164.56 Aligned_cols=278 Identities=11% Similarity=-0.009 Sum_probs=218.1
Q ss_pred HHhcCCHHHHHH-HHhcCCCCCC-----ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHHHhcCc
Q 040319 379 LTRCGRMADAEK-MFYRWPTDRD-----DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLGVCGTL 451 (812)
Q Consensus 379 y~~~g~~~~A~~-~f~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~a~~~~ 451 (812)
|.-.|++++|.. .|++.....+ +...|..+...+.+.|++++|+..|+++.. ..| +..++..+...+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHC
Confidence 444577888887 7775432211 255678888889999999999999999887 334 445677777888889
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-ChhHHHH---------------HHHH
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-DIVSWNG---------------LIAG 513 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~---------------li~~ 513 (812)
|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.. | +...+.. .+..
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999988865 44678888999999999999999999987654 2 2222221 1333
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhh
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPD---AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGY 589 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~ 589 (812)
+...|++++|+..|+++.+ ..|+ ..++..+...+.. .|++++|...|+.+.+. .|+ ...|..++.++.+
T Consensus 191 ~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNL--SGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLAN 263 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HhhcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 4489999999999999998 5666 5778888888888 99999999999998862 454 7889999999999
Q ss_pred cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------CchHHHHHhhhhhC
Q 040319 590 WGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD-----------PATYILVSNLYSSS 656 (812)
Q Consensus 590 ~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~ 656 (812)
.|++++|++.++++. ..| +..+|..+...+...|+.+.|...+++++++.|++ +..+..++.+|...
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 999999999999865 445 67899999999999999999999999999999987 78899999999999
Q ss_pred CCcchHHHHHH
Q 040319 657 GRWHNSELVRE 667 (812)
Q Consensus 657 g~~~~a~~~~~ 667 (812)
|++++|..+.+
T Consensus 344 g~~~~A~~~~~ 354 (368)
T 1fch_A 344 GQSDAYGAADA 354 (368)
T ss_dssp TCGGGHHHHHT
T ss_pred CChHhHHHhHH
Confidence 99999998876
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.9e-15 Score=158.32 Aligned_cols=260 Identities=13% Similarity=0.053 Sum_probs=224.0
Q ss_pred CceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHH
Q 040319 400 DDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE-IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478 (812)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 478 (812)
++...+..+...+...|++++|+++|+++.. ..|+. ..+..+...+...|+++.|..++..+.+.. +.+..++..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVME---KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4466778888899999999999999999987 33443 355567778889999999999999999864 346778899
Q ss_pred HHHHhhhcC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCC
Q 040319 479 MVSMYFKCC-NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTN 553 (812)
Q Consensus 479 Li~~y~k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~ 553 (812)
+...|...| ++++|...|++..+ .+...|..+...|...|++++|++.|+++.+ ..|+ ..++..+...+..
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~-- 171 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGL-- 171 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHH--
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHH--
Confidence 999999999 99999999998654 4577899999999999999999999999998 5565 3667777778888
Q ss_pred CchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHh
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-F----------QPKVSVWRALLDSCRI 621 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~----------~p~~~~~~~ll~~~~~ 621 (812)
.|++++|.++|+.+.+ ..| +...+..++.++.+.|++++|.+.+++.. . +.+..+|..+...+..
T Consensus 172 ~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 172 TNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp TTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 9999999999999986 334 47889999999999999999999998753 1 3346789999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 622 RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 622 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.|+.+.|...+++++++.|+++..+..++.+|...|++++|.+.+++..
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998763
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=2.3e-14 Score=159.18 Aligned_cols=367 Identities=11% Similarity=-0.010 Sum_probs=249.6
Q ss_pred CchhHHHHHHHHHHh----cCChHHHHHHHhcCC-CCcchhHHHHHHHHHh----hCChhHHHHHhccCCC-CCcccHHH
Q 040319 235 ANLSVNNALIGFYTK----CGRVKDVVALLERMP-VMDIITLTEIIIAYME----FGYVDLAVEIFDKMPE-KNSVSYNA 304 (812)
Q Consensus 235 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~d~~~~~~ 304 (812)
.+......|..+|.. .+++++|...|++.. ..+...+..|...|.. .++.++|.+.|++..+ .+...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 356666667777776 677777777666542 2234444445555554 4555555555554432 23334444
Q ss_pred HHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHH
Q 040319 305 LLAGYCK----NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLT 380 (812)
Q Consensus 305 li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 380 (812)
|...|.. .+++++|+..|++..+ .| +......|..+|.
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----------------------------------~~---~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAE-----------------------------------QG---RDSGQQSMGDAYF 158 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-----------------------------------TT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHH-----------------------------------CC---CHHHHHHHHHHHH
Confidence 4444444 4445555555554444 33 3344445555555
Q ss_pred h----cCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHH----cCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcC--
Q 040319 381 R----CGRMADAEKMFYRWPTDRDDSIIWTSMICGYAR----SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGT-- 450 (812)
Q Consensus 381 ~----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~-- 450 (812)
. .++.++|.+.|++.. ...+..++..+...|.. .+++++|++.|++..+ .+ +...+..+-..+..
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAA-EQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGI 233 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTS
T ss_pred cCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCC
Confidence 5 567777777776655 33446666666666766 6777777777777665 33 33344444444432
Q ss_pred --ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh----cCCHHHHHHHHccCCC-CChhHHHHHHHHHHhc-----C
Q 040319 451 --LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFK----CCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLLH-----R 518 (812)
Q Consensus 451 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~-----g 518 (812)
.++.+.|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+...+..|...|... +
T Consensus 234 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCC
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcC
Confidence 567777777777777654 44566667777777 8999999999988765 5667888888888887 8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhh----cC
Q 040319 519 QGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLN---LVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGY----WG 591 (812)
Q Consensus 519 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g 591 (812)
++++|+..|++..+.| +...+..+...+.. .| +.++|.++|+...+. .++..+..|..+|.. .+
T Consensus 311 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG---DATAQANLGAIYFR--LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh--CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999865 34455555555554 45 889999999998862 467888999999988 89
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCC---CCchHHHHHhhhhhC
Q 040319 592 FLEEAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGKRVAKHILAMEPQ---DPATYILVSNLYSSS 656 (812)
Q Consensus 592 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~ 656 (812)
++++|.+.+++..-..++..+..|...+.. .+|.++|...++++++.+|+ ++.+...|+.++.+.
T Consensus 382 ~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 382 DEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 999999999986534467788888888887 89999999999999999954 777888888877653
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=6.4e-14 Score=143.35 Aligned_cols=247 Identities=11% Similarity=0.022 Sum_probs=167.9
Q ss_pred HHhcCCHHHHHHHHhcCCCCCCce--eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHH
Q 040319 379 LTRCGRMADAEKMFYRWPTDRDDS--IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEM 456 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~ 456 (812)
....|+++.|.+.++.+....|+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 456788888888888765333322 2345567788889999888876643 134566677777788888888888
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040319 457 GKQIHSYALKTGF-SSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASI 535 (812)
Q Consensus 457 a~~~~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 535 (812)
+...++.+...+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+ .
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--Q 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h
Confidence 8888888887664 33566777788899999999999999988 56778888889999999999999999999988 4
Q ss_pred CCCHHHHH---HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 040319 536 KPDAITFV---LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW 612 (812)
Q Consensus 536 ~pd~~t~~---~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~ 612 (812)
.|+..... ..+..+.. .|++++|..+|+++.+. . +++..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~--~~~~~eA~~~~~~~l~~--~--------------------------------p~~~~~~ 203 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAG--GEKLQDAYYIFQEMADK--C--------------------------------SPTLLLL 203 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHH--S--------------------------------CCCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHh--C--------------------------------CCcHHHH
Confidence 57753221 11222223 57777777777777652 1 2244455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcch-HHHHHHHHH
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHN-SELVREDMR 670 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~ 670 (812)
+.+..++...|++++|+..++++++++|+++.++..++.++...|++++ +.++++++.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555555555555556666666666666666666666666666666654 345555543
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.6e-14 Score=159.75 Aligned_cols=293 Identities=12% Similarity=0.025 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHhcCCC-CCCceeeeHHHHHH---HHHcCChhhHHHHHHHhcccCCCCCChh-hHHH
Q 040319 371 IEAALLDMLTRC--GRMADAEKMFYRWPT-DRDDSIIWTSMICG---YARSGKPEHAILLFHQSQSEATVVPDEI-ALTS 443 (812)
Q Consensus 371 ~~~~Li~~y~~~--g~~~~A~~~f~~~~~-~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ 443 (812)
++..+..++.+. +++++|...|++... .+++...+..+... +...++.++|++.|++..+ +.|+.. .+..
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l~p~~~~~~~~ 214 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---LNPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---HCSSCHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 333333344443 357778887776542 23334455544443 3345777788888887766 455443 3333
Q ss_pred HHHH----hcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHh
Q 040319 444 VLGV----CGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-DIVSWNGLIAGHLL 516 (812)
Q Consensus 444 ll~a----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 516 (812)
+... ....+..+.|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+...|..
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 2222 234466778888888777654 34566777888888888888888888877654 3 44566666655532
Q ss_pred c-------------------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC
Q 040319 517 H-------------------RQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT 576 (812)
Q Consensus 517 ~-------------------g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 576 (812)
. +..++|+..|++..+ ..|+. .++..+...+.. .|++++|.+.|++..+ +.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~kaL~---~~~~ 366 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHAL--ADQYEEAEYYFQKEFS---KELT 366 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHH--TTCHHHHHHHHHHHHH---SCCC
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHH--hccHHHHHHHHHHHHh---cCCC
Confidence 2 235678888888877 55554 556666677777 8899999999988775 2343
Q ss_pred cc----hHHHHHH-HHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 577 SE----HYASLVS-VLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 577 ~~----~y~~li~-~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
.. .+..+.. .+...|+.++|++.+++.. +.|+...+... ...++.++++.++.+|+++.+|..|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22 2333333 2346788899998888754 66765443332 34456678888899999999999999
Q ss_pred hhhhhCCCcchHHHHHHHHHhCCCCCCCceeEE
Q 040319 651 NLYSSSGRWHNSELVREDMREKGFRKHPSRSWI 683 (812)
Q Consensus 651 ~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 683 (812)
.+|...|++++|.+.+++.-+.|.......+|+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999877665444455565
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=2.2e-13 Score=151.30 Aligned_cols=352 Identities=10% Similarity=-0.036 Sum_probs=267.2
Q ss_pred CcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhcc----chhhhhHHHHHhhHHHhcCCCch
Q 040319 298 NSVSYNALLAGYCK----NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGL----IMEAKLSEQIHGFVMKFGLGSND 369 (812)
Q Consensus 298 d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~ 369 (812)
|+.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444544 556666666666665543 22333333333333 556666666666665544 44
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHH----cCChhhHHHHHHHhcccCCCCCChhhH
Q 040319 370 CIEAALLDMLTR----CGRMADAEKMFYRWPTDRDDSIIWTSMICGYAR----SGKPEHAILLFHQSQSEATVVPDEIAL 441 (812)
Q Consensus 370 ~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~t~ 441 (812)
.....|..+|.. .+++++|.+.|++.. ...+...+..+...|.. .+++++|++.|++..+ .+ +...+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~---~~~a~ 186 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-QG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHH
Confidence 556667777877 789999999999877 55557788888888887 7899999999999887 43 45555
Q ss_pred HHHHHHhcC----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh----cCCHHHHHHHHccCCC-CChhHHHHHHH
Q 040319 442 TSVLGVCGT----LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFK----CCNMSNAIKAFNKMPS-HDIVSWNGLIA 512 (812)
Q Consensus 442 ~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 512 (812)
..+-..+.. .++.+.|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 556556655 789999999999999865 56677888888886 8999999999998665 56778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCC-----chHHHHHHHHHHhhhhcCccCCcchHHHH
Q 040319 513 GHLL----HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNL-----NLVDSCRKLFLSMKTIYNIEPTSEHYASL 583 (812)
Q Consensus 513 ~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 583 (812)
.|.. .++.++|++.|++..+.| +...+..+...+.. . ++.++|..+|+...+ . .+...+..+
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~--~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~l 334 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK--GAEGVAKNREQAISWYTKSAE-Q---GDATAQANL 334 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH--CBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc--CCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHH
Confidence 8888 899999999999998865 33455555555544 4 899999999999886 2 346778888
Q ss_pred HHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh-
Q 040319 584 VSVLGYWG---FLEEAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS- 655 (812)
Q Consensus 584 i~~l~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~- 655 (812)
..+|.+.| ++++|++.+++.....++..+..|...+.. .++.++|...++++.+.. ++.++..|+.+|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 88888767 789999999986544678888899998888 899999999999999865 57899999999999
Q ss_pred ---CCCcchHHHHHHHHHhCCC
Q 040319 656 ---SGRWHNSELVREDMREKGF 674 (812)
Q Consensus 656 ---~g~~~~a~~~~~~m~~~g~ 674 (812)
.+++++|.+.+++..+.+.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999877653
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=1.4e-15 Score=162.13 Aligned_cols=256 Identities=11% Similarity=-0.041 Sum_probs=194.6
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMV 480 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 480 (812)
...|..+...+.+.|++++|+..|+++.. ..| +..++..+...+...|+++.|...+..+.+.. +.+..++..+.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL---QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 55688888888999999999999998886 334 44567777778888888888888888888764 34577888888
Q ss_pred HHhhhcCCHHHHHHHHccCCC--CC-----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPS--HD-----------IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD---AITFVL 544 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ 544 (812)
..|.+.|++++|...|+++.+ |+ ...+..+...|...|++++|++.|+++.+ ..|+ ..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHHH
Confidence 888888888888888887654 21 12233457788888899999999999888 4554 577777
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRI 621 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~ 621 (812)
+...+.. .|++++|.++|+.+.+. .| +...|..++.+|.+.|++++|++.++++. ..| +..+|..+...+..
T Consensus 219 l~~~~~~--~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 219 LGVLFHL--SGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHH--HTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 7788888 88999999999888762 34 47788888999999999999999888864 445 57788888888889
Q ss_pred cCCHHHHHHHHHHHHccCCC------------CCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 622 RLNTTIGKRVAKHILAMEPQ------------DPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 622 ~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
.|+.++|...+++++++.|+ +...+..|+.+|...|+.+.+.++.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999988876 356788889999999998888776543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=9.2e-15 Score=155.75 Aligned_cols=231 Identities=11% Similarity=-0.015 Sum_probs=196.0
Q ss_pred ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHH
Q 040319 437 DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAG 513 (812)
Q Consensus 437 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 513 (812)
+...+..+...+...|+++.|..++..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457778888899999999999999999865 45788999999999999999999999998764 457899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH-----------HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHH
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDAIT-----------FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYAS 582 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t-----------~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 582 (812)
|...|++++|++.|+++.+ +.|+... +..+...+.. .|++++|.++|+.+.+...-.++...|..
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVD--SSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------C--CHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhh--hhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 9999999999999999998 5665422 2234556777 99999999999999874322225789999
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcc
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWH 660 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 660 (812)
++.+|.+.|++++|++.++++. ..| +..+|..+..++...|+.+.|+..++++++++|+++.++..++.+|...|+++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999865 444 68899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhC
Q 040319 661 NSELVREDMREK 672 (812)
Q Consensus 661 ~a~~~~~~m~~~ 672 (812)
+|.+.++++.+.
T Consensus 299 ~A~~~~~~al~~ 310 (365)
T 4eqf_A 299 EAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.63 E-value=5.1e-15 Score=157.81 Aligned_cols=256 Identities=10% Similarity=0.009 Sum_probs=204.0
Q ss_pred HHHcCChhhHHH-HHHHhcccCCCCC--ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCC
Q 040319 412 YARSGKPEHAIL-LFHQSQSEATVVP--DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCN 488 (812)
Q Consensus 412 ~~~~g~~~~A~~-~~~~m~~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 488 (812)
+...|++++|++ .|.+......-.| +...+..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344588999998 8887765111122 34567778888999999999999999999864 4577889999999999999
Q ss_pred HHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHh
Q 040319 489 MSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVL----------------IISAY 549 (812)
Q Consensus 489 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~----------------ll~a~ 549 (812)
+++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+ ..|+...... .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999997654 5778999999999999999999999999999 5565432221 12333
Q ss_pred cCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 040319 550 RYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTI 627 (812)
Q Consensus 550 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~ 627 (812)
.. .|++++|..+|+.+.+...-.++...+..++.++.+.|++++|++.++++. ..| +..+|..+...+...|+.+.
T Consensus 192 ~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LS--DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HH--HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hh--cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 36 899999999999998743222247889999999999999999999999865 445 67899999999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 628 GKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 628 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
|...++++++++|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988653
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=1.2e-13 Score=141.40 Aligned_cols=253 Identities=8% Similarity=-0.057 Sum_probs=197.2
Q ss_pred HHhcCChHHHHHHHhcCCCCcc----hhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 040319 247 YTKCGRVKDVVALLERMPVMDI----ITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLF 322 (812)
Q Consensus 247 ~~~~g~~~~A~~l~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~ 322 (812)
....|++..|+..++.....+. .....+.++|...|++++|+..++....|+..++..+...+...++.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4556888888888877654332 344556788888888888888887765566667777888888888889999998
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce
Q 040319 323 VKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS 402 (812)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~ 402 (812)
+++...+..|+...+ +..+...|.+.|++++|.+.|++ +++.
T Consensus 89 ~~ll~~~~~P~~~~~----------------------------------~~~la~~~~~~g~~~~Al~~l~~----~~~~ 130 (291)
T 3mkr_A 89 DREMSRSVDVTNTTF----------------------------------LLMAASIYFYDQNPDAALRTLHQ----GDSL 130 (291)
T ss_dssp HHHHHSCCCCSCHHH----------------------------------HHHHHHHHHHTTCHHHHHHHHTT----CCSH
T ss_pred HHHHhcccCCCCHHH----------------------------------HHHHHHHHHHCCCHHHHHHHHhC----CCCH
Confidence 888877666664433 33445678899999999999987 3447
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHH---HHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALT---SVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSM 479 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 479 (812)
..+..++..|.+.|++++|.+.|+++.. ..|+..... ..+..+...|++++|..++..+.+. .+.+..+++.+
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~l 206 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQD---QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQ 206 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHH
Confidence 7888899999999999999999999987 457653221 2233444568999999999999987 45688899999
Q ss_pred HHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHHHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDE-ALAVWSSMEKASIKPDAITFV 543 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~pd~~t~~ 543 (812)
..+|.+.|++++|...|++... .+..+|+.++..+...|+.++ +.++++++++ +.|+.....
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~ 272 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIK 272 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 9999999999999999998654 467789999999999999876 6789999998 788876543
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.8e-16 Score=178.02 Aligned_cols=128 Identities=11% Similarity=0.078 Sum_probs=95.7
Q ss_pred CCCchhHHHHHHHHhhhcCCHHHHHHHHccCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 469 FSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP-------SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 469 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
...-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33445678888888888888888888886543 37888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCCch-HHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHH
Q 040319 542 FVLIISAYRYTNLNL-VDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEET 599 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~ 599 (812)
|+++|.++++ .|. .++|.++|++|.+ .|+.||..+|++++....|.+-++...++
T Consensus 203 YntLI~glcK--~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGR--QDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHH--HTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 8888888777 776 4677788888876 67888888888887766666554444444
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=5.1e-16 Score=174.38 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=126.8
Q ss_pred cchHHHHHHHHccCChhhHHHHHhcCC-------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 040319 34 RFGNPLISAYLKLGHVADAYKIFYGLS-------SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAIL 106 (812)
Q Consensus 34 ~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 106 (812)
.+||+||++|++.|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 579999999999999999999997753 5999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHcCC
Q 040319 107 TACIRLLEL-ELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHK-----DTVSWNTVISSVVNEF 180 (812)
Q Consensus 107 ~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~-----~~~~~~~li~~~~~~g 180 (812)
.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+ -++.+++++..+..+ .+.+.+.|...|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~-vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT-VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH-HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH-HHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999999999998888 777777776655431 2334444555566555
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=1.4e-14 Score=151.38 Aligned_cols=255 Identities=13% Similarity=0.008 Sum_probs=188.4
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
..|..+...+...|++++|+.+|+++.. ..| +...+..+...+...|+++.|...+..+.+.. +.+..++..+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ---AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3455555666666666666666666654 223 33345555556666666666666666666543 335566777777
Q ss_pred HhhhcCCHHHHHHHHccCCC---CChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS---HDIVSWNGL--------------IA-GHLLHRQGDEALAVWSSMEKASIKPD-AITF 542 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~ 542 (812)
.|.+.|++++|...|+++.. .+...+..+ .. .+...|++++|++.++++.+ ..|+ ...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE--MNPNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH--HSTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh--hCCCCHHHH
Confidence 77778888888777776543 222233322 22 36778889999999999988 4454 5677
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 040319 543 VLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSC 619 (812)
Q Consensus 543 ~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~ 619 (812)
..+...+.. .|++++|.++++.+.+. .| +...|..++.++.+.|++++|.+.++++. ..| +..+|..+...+
T Consensus 176 ~~la~~~~~--~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 176 ASLGVLYNL--SNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--hccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 777778888 99999999999988762 34 47789999999999999999999998864 444 678899999999
Q ss_pred HhcCCHHHHHHHHHHHHccCCC------------CCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQ------------DPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
...|+.+.|...+++++++.|+ ++..+..++.+|...|++++|.+++++
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999 788999999999999999999998764
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.5e-12 Score=146.11 Aligned_cols=416 Identities=9% Similarity=0.010 Sum_probs=257.5
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 040319 164 KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNAL 243 (812)
Q Consensus 164 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 243 (812)
.|..+|..++. +.+.|++++|..+|+.+. . -.+-+...|...+..+.+.|+.+.|..+++.+++.. |+...|..+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al-~-~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLV-A-QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHH-T-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHH-H-HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 36778888887 477888999999998883 2 123334457777777777888888888888887653 466666666
Q ss_pred HHH-HHhcCChHHHHH----HHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHh-------
Q 040319 244 IGF-YTKCGRVKDVVA----LLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCK------- 311 (812)
Q Consensus 244 i~~-~~~~g~~~~A~~----l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~------- 311 (812)
+.. ....|+.+.|.+ +|++.. ... .+...+...|...+....+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al------------------------~~~-g~~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFAL------------------------DKI-GMEIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHH------------------------HHT-TTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHH------------------------HHC-CCCcccHHHHHHHHHHHhcCCCcccH
Confidence 643 234566666554 333220 000 0001123344444443322
Q ss_pred --CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 040319 312 --NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAE 389 (812)
Q Consensus 312 --~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 389 (812)
.|++++|..+|++.+.....+....|..........+. ..+..++. .+.+++..|.
T Consensus 141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~ 198 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNAR 198 (530)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHH
Confidence 46666777777776652111111122111110000000 00000000 0112233333
Q ss_pred HHHh----------cCCC-CCCc--------eeeeHHHHHHHHHc----CCh----hhHHHHHHHhcccCCCCCC-hhhH
Q 040319 390 KMFY----------RWPT-DRDD--------SIIWTSMICGYARS----GKP----EHAILLFHQSQSEATVVPD-EIAL 441 (812)
Q Consensus 390 ~~f~----------~~~~-~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~g~~p~-~~t~ 441 (812)
.+++ .... .+|+ ...|...+.-.... ++. .+|+.+|++... ..|+ ...|
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~---~~p~~~~~w 275 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL---VLGHHPDIW 275 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH---HHTTCHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH---hCCCCHHHH
Confidence 3222 1110 0111 12444444332221 122 367778888776 3443 3445
Q ss_pred HHHHHHhcC-------ccchH-------HHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC-h
Q 040319 442 TSVLGVCGT-------LGFHE-------MGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD-I 504 (812)
Q Consensus 442 ~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~ 504 (812)
......+.. .|+++ .|..+++..++.-.+.+..++..++..+.+.|++++|..+|+++.+ |+ .
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 355 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc
Confidence 555555443 67776 8888888887633345688899999999999999999999997654 43 3
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH-HHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchH
Q 040319 505 -VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLII-SAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHY 580 (812)
Q Consensus 505 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll-~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y 580 (812)
..|..++..+.+.|+.++|.++|++..+ ..|+. ..+.... ..+.. .|+.++|..+|+...+. .| +...|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~~--~~~~~~A~~~~e~al~~---~p~~~~~~ 428 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYC--SKDKSVAFKIFELGLKK---YGDIPEYV 428 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CTTCCTHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHH---HTTCHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHHH--cCChhHHHHHHHHHHHH---CCCCHHHH
Confidence 5899999999999999999999999998 44543 2232221 12235 78999999999988763 35 47899
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP----FQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~----~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
..+++.+.+.|+.++|..+|++.. ..|+ ..+|...+.....+|+.+.+..+.+++.+..|+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999998853 3342 558999999999999999999999999999885
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=4.2e-14 Score=138.09 Aligned_cols=193 Identities=11% Similarity=0.061 Sum_probs=157.7
Q ss_pred CCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 040319 470 SSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLI 545 (812)
Q Consensus 470 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~l 545 (812)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.++ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45667788889999999999999999997654 4678899999999999999999999999999 67876 567777
Q ss_pred HHHhcCCCC-----------chHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 040319 546 ISAYRYTNL-----------NLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVW 612 (812)
Q Consensus 546 l~a~~~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~ 612 (812)
..++.. . |++++|...|+...+ +.|+ ...|..+..+|...|++++|++.+++.. ...+...|
T Consensus 80 g~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVA--LYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIR 154 (217)
T ss_dssp HHHHHH--HHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHH--hhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Confidence 777777 8 999999999999887 4565 7789999999999999999999999864 22778899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
..+..++...|+.++|+..++++++++|+++..+..++.+|...|++++|.+.+++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988764
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.56 E-value=1.7e-13 Score=143.08 Aligned_cols=228 Identities=14% Similarity=0.053 Sum_probs=131.2
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHH
Q 040319 298 NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLD 377 (812)
Q Consensus 298 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 377 (812)
+...|..+...+...|++++|..+|+++.+.. |+ +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 63 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PE----------------------------------REEAWRSLGL 63 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----------------------------------CHHHHHHHHH
Confidence 45567788888899999999999999887753 21 2233344455
Q ss_pred HHHhcCCHHHHHHHHhcCCC-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHH-----------
Q 040319 378 MLTRCGRMADAEKMFYRWPT-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVL----------- 445 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll----------- 445 (812)
.|.+.|++++|.+.|+++.. .+++..+|..+...|...|++++|++.|+++.. ..|+.......+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL---SQPQYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TSTTTTTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHhHHHHHHHHHH
Confidence 56666666666666665431 123355666777777777777777777777765 334333222221
Q ss_pred ---H--HhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhc
Q 040319 446 ---G--VCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH 517 (812)
Q Consensus 446 ---~--a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 517 (812)
. .+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG 219 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2 2455566666666666665543 22445555566666666666666666555432 2345555555566666
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 518 RQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
|++++|++.|+++.+ ..|+ ..++..+...+.. .|++++|.+.|+.+.+
T Consensus 220 ~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 220 NRPQEALDAYNRALD--INPGYVRVMYNMAVSYSN--MSQYDLAAKQLVRAIY 268 (327)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHH
Confidence 666666666666555 3333 2444444445555 5555555555555543
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=3.8e-13 Score=148.70 Aligned_cols=377 Identities=12% Similarity=0.040 Sum_probs=214.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC------------CCcchhHHHHHHHHHhhCChhHHHHHhccCCC-------
Q 040319 236 NLSVNNALIGFYTKCGRVKDVVALLERMP------------VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE------- 296 (812)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------- 296 (812)
....||.|...|...|+.++|++.|++.. .....+|+.+...|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 35677888888888888888888776642 12346788888889999999888887765431
Q ss_pred C----CcccHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHH---hccchhhhhHHHHHhhHHHhcCC
Q 040319 297 K----NSVSYNALLAGYCK--NGKAMEALGLFVKLLEEGLVLTEF-TLTSVVNA---CGLIMEAKLSEQIHGFVMKFGLG 366 (812)
Q Consensus 297 ~----d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a---~~~~~~~~~a~~i~~~~~~~g~~ 366 (812)
+ ...++..+..++.. .+++++|+..|++.++. .|+.. .+..+..+ +...++.+.+.+.+..+++...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 12345444444444 45688999999888875 34433 22222222 3344556677777777766542
Q ss_pred CchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhh-
Q 040319 367 SNDCIEAALLDMLTR----CGRMADAEKMFYRWPT-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIA- 440 (812)
Q Consensus 367 ~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t- 440 (812)
.+..++..+...+.. .|+.++|.+.|++... .+++...|..+...|...|++++|+..|.+..+ ..|+...
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE---YIPNNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH---hCCChHHH
Confidence 234444444444443 4567788888876542 233456677888888888888888888888876 5565443
Q ss_pred HHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhc
Q 040319 441 LTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH 517 (812)
Q Consensus 441 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 517 (812)
+..+...+...+.. .... ....+.......+..+.|...|++..+ .+..+|..+...|...
T Consensus 284 ~~~lg~~y~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQ---------VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---------hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 22222222111000 0000 000011111122345677777766543 5567889999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHH-HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCC
Q 040319 518 RQGDEALAVWSSMEKASIKPDAIT----FVLIIS-AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGF 592 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~ 592 (812)
|++++|++.|++.++. .|+... +..+.. ...+ .|+.++|+..|++..+ +.|+........
T Consensus 348 ~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ai~~y~kal~---i~~~~~~~~~~~-------- 412 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQ--MKCEDKAIHHFIEGVK---INQKSREKEKMK-------- 412 (472)
T ss_dssp TCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHH---SCCCCHHHHHHH--------
T ss_pred ccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh---cCcccHHHHHHH--------
Confidence 9999999999999984 444322 222222 2335 7899999999998876 566643332222
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 593 LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
+.+..++++.. ..| ++.+|..|...+...|+.++|...+++++++.|.+|.+..-++
T Consensus 413 -~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 -DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 23334444322 234 6778999999999999999999999999999999888766554
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.8e-13 Score=136.05 Aligned_cols=211 Identities=9% Similarity=-0.034 Sum_probs=167.5
Q ss_pred HHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC--------hhHHHHHHHHH
Q 040319 445 LGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD--------IVSWNGLIAGH 514 (812)
Q Consensus 445 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~--------~~~~~~li~~~ 514 (812)
...+...|+++.|...+..+++.. .+..++..+...|...|++++|...|++..+ |+ ...|..+...|
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 334444444455555554444444 4556667777777777888888777776554 21 57888899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCCh
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFL 593 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~ 593 (812)
...|++++|+..|+++.+ +.|+... +.. .|++++|...++.+.. ..| +...|..+...+.+.|++
T Consensus 90 ~~~~~~~~A~~~~~~a~~--~~~~~~~-------~~~--~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLT--EHRTADI-------LTK--LRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCCCHHH-------HHH--HHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHh--cCchhHH-------HHH--HhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCH
Confidence 999999999999999998 6677432 344 7889999999998876 234 367888999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 594 EEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 594 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
++|.+.+++.. ..| +..+|..+...+...|+.+.|...+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999865 344 6888999999999999999999999999999999999999999999999999999999988754
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=5.5e-13 Score=135.24 Aligned_cols=247 Identities=13% Similarity=0.068 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh--hhHHHHHHH
Q 040319 371 IEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE--IALTSVLGV 447 (812)
Q Consensus 371 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~t~~~ll~a 447 (812)
+.......|...|++++|...|++.... +.+...|..+...|...|++++|++.|++... .+..|+. ..+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 3444556677777777777777765422 33345677777777777777777777777765 3222221 114444445
Q ss_pred hcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHH
Q 040319 448 CGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEAL 524 (812)
Q Consensus 448 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 524 (812)
+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 12334444555555555555555555544433 22333444441222223445555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCC---hHHHHHHHH
Q 040319 525 AVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGF---LEEAEETIN 601 (812)
Q Consensus 525 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~---~~~A~~~~~ 601 (812)
+.|+++.+ ..|+. ...+..+..++...|+ +++|...++
T Consensus 163 ~~~~~a~~--~~p~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 163 SSFVKVLE--LKPNI-------------------------------------YIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHHH--HSTTC-------------------------------------HHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHH--hCccc-------------------------------------hHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 55554444 33332 3334444444444444 444444444
Q ss_pred hCC----CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 602 NMP----FQPK------VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 602 ~m~----~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
+.. ..|+ ..+|..+...+...|+.+.|...++++++++|+++.+...+..+....+.
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 322 1122 24677778888899999999999999999999999888888777665543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=1e-12 Score=133.39 Aligned_cols=240 Identities=9% Similarity=-0.105 Sum_probs=184.1
Q ss_pred cCChhhHHHHHHHhcccCCC--CC-ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHH
Q 040319 415 SGKPEHAILLFHQSQSEATV--VP-DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSN 491 (812)
Q Consensus 415 ~g~~~~A~~~~~~m~~~~g~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 491 (812)
.|++++|+..|+++.. ... .| +..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 18 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILA-SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHh-cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4667777777777776 221 11 23456666677777788888888887777754 3467788889999999999999
Q ss_pred HHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 492 AIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 492 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
|...|+++.+ .+...|..+...|...|++++|+..|+++.+ ..|+.......+..+.. .|++++|...++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQ--KLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH--HHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH--hcCHHHHHHHHHHHH
Confidence 9999987764 4678999999999999999999999999999 67887666656666666 899999999998777
Q ss_pred hhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 569 TIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 569 ~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
.. .+++...+ .++..+...+..++|++.+++.. ..|+ ..+|..+...+...|+.+.|...++++++++|++
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 63 23334444 47778888888999999998854 3332 5788889999999999999999999999999976
Q ss_pred CchHHHHHhhhhhCCCcchHHHHH
Q 040319 643 PATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 643 ~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
.. ..+.++...|++++|.+..
T Consensus 249 ~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CH---HHHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHHhhHHHH
Confidence 44 3467788889999887764
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.3e-12 Score=131.12 Aligned_cols=233 Identities=12% Similarity=0.009 Sum_probs=169.1
Q ss_pred eeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCC--Cc----hhHHH
Q 040319 404 IWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFS--SD----LGVAN 477 (812)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~~ 477 (812)
.|..+...+...|++++|+..|++... .. ++...+..+..++...|+++.|...+..+.+.... ++ ..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344455555556666666666655555 22 44455555555555666666666665555543211 11 56777
Q ss_pred HHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCC
Q 040319 478 SMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNL 554 (812)
Q Consensus 478 ~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 554 (812)
.+...|.+.|++++|...|++... |+ ...+...|++++|++.++++.. ..|+. ..+..+...+.. .
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFT--K 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHH--h
Confidence 888888888999999888887654 44 2346667889999999999988 66765 556667777778 8
Q ss_pred chHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 040319 555 NLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVA 632 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 632 (812)
|++++|...|+.+.+.. +.+...|..+..++.+.|++++|++.+++.. ..| +..+|..+...+...|+.+.|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999887632 2347788999999999999999999998865 445 5788999999999999999999999
Q ss_pred HHHHccC------CCCCchHHHHHhh
Q 040319 633 KHILAME------PQDPATYILVSNL 652 (812)
Q Consensus 633 ~~~~~~~------p~~~~~~~~l~~~ 652 (812)
++++++. |++...+..+..+
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999998 8777766666554
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=4.2e-12 Score=127.06 Aligned_cols=195 Identities=10% Similarity=-0.050 Sum_probs=156.3
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISA 548 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a 548 (812)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA--SDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHH
Confidence 45666777788888888888888877653 4567788888888888899999998888887 4453 4666677777
Q ss_pred hcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 040319 549 YRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNT 625 (812)
Q Consensus 549 ~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~ 625 (812)
+.. .|++++|.++|+.+.+ .+..| +...+..++.++.+.|++++|.+.+++.. ..| +..+|..+...+...|+.
T Consensus 115 ~~~--~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYE--QKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHH--TTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHH--HhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 777 8889999998888875 33445 36678888888889999999998888754 344 577888888888899999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 626 TIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 626 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+.|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999998888654
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=5.4e-12 Score=123.55 Aligned_cols=196 Identities=12% Similarity=-0.005 Sum_probs=160.1
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIIS 547 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 547 (812)
+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+ ..|+ ..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 456677788888888899988888887653 4567888888889999999999999999888 4554 466777777
Q ss_pred HhcCCCC-chHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 040319 548 AYRYTNL-NLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRL 623 (812)
Q Consensus 548 a~~~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~ 623 (812)
.+.. . |++++|..+|+.+.+ .+..|+ ...|..+..++.+.|++++|++.++++. ..| +...|..+...+...|
T Consensus 85 ~~~~--~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCG--RLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHT--TTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHH--hcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 7777 8 999999999998876 333343 5778888899999999999999988764 344 5778888888899999
Q ss_pred CHHHHHHHHHHHHccCC-CCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 624 NTTIGKRVAKHILAMEP-QDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 624 ~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+.+.|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999 88888989999999999999999998887643
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=3.8e-12 Score=126.50 Aligned_cols=195 Identities=9% Similarity=0.003 Sum_probs=137.3
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIIS 547 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 547 (812)
....+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE--LDSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcchHHHHHHHH
Confidence 455566677778888888888888776643 4567778888888888888888888888887 4454 466666667
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNT 625 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~ 625 (812)
.+.. .|++++|.++|+.+.+.. +.+...+..++.++.+.|++++|.+.++++. ..| +..+|..+...+...|+.
T Consensus 100 ~~~~--~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVV--KEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHH--hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 7777 888888888888877621 2346678888888888888888888888754 333 677888888888888888
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 626 TIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 626 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+.|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99998888888888888888888899999999999998888887553
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.36 E-value=8.2e-12 Score=132.11 Aligned_cols=243 Identities=9% Similarity=0.004 Sum_probs=183.7
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHhcCccc-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVCGTLGF-HEMGKQIHSYALKTGFSSDLGVANSMV 480 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~Li 480 (812)
..|+.+...+.+.|++++|+..|++... +.|+.. .|..+-.++...|. +++|...+..+++.. +.+..+|..+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~---l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 4566666777777888888888877776 556543 45556666677775 788888777777754 33677888888
Q ss_pred HHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCch
Q 040319 481 SMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~ 556 (812)
.+|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|+++++ +.|+. ..|..+..++... .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l-~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNT-TGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHh-cCc
Confidence 889999999999999987764 5678899999999999999999999999998 67765 5566665555440 233
Q ss_pred HHHH-----HHHHHHhhhhcCccCC-cchHHHHHHHHhhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC----
Q 040319 557 VDSC-----RKLFLSMKTIYNIEPT-SEHYASLVSVLGYWG--FLEEAEETINNMPFQP-KVSVWRALLDSCRIRL---- 623 (812)
Q Consensus 557 ~~~a-----~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~---- 623 (812)
.++| ++.|+...+ +.|+ ...|..+..+|.+.| ++++|++.++++...| +..++..+...+...|
T Consensus 251 ~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 3555 577777765 4565 678888888898888 6899999988876555 4677888888887763
Q ss_pred -----CHHHHHHHHHHH-HccCCCCCchHHHHHhhhhh
Q 040319 624 -----NTTIGKRVAKHI-LAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 624 -----~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~ 655 (812)
..++|..+++++ .+++|.....|..++..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999999 99999988888888776653
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=4.3e-12 Score=139.61 Aligned_cols=191 Identities=9% Similarity=-0.046 Sum_probs=168.2
Q ss_pred CchhHHHHHHHHhhhcCCH-HHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040319 471 SDLGVANSMVSMYFKCCNM-SNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLII 546 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~-~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 546 (812)
.+...+..+...|...|++ ++|...|++..+ .+...|..+...|...|++++|++.|++.++ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 4677788888888889999 999988887654 4578899999999999999999999999999 678888888888
Q ss_pred HHhcCCCC---------chHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhc--------CChHHHHHHHHhCC-CCC
Q 040319 547 SAYRYTNL---------NLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYW--------GFLEEAEETINNMP-FQP 607 (812)
Q Consensus 547 ~a~~~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~--------g~~~~A~~~~~~m~-~~p 607 (812)
.++.. . |++++|.+.|++..+ +.|+ ...|..+..+|... |++++|++.+++.. ..|
T Consensus 178 ~~~~~--~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 178 MVLRQ--LQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHTT--CCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHH--hccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 88888 8 999999999999887 3454 78899999999998 99999999999865 456
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 608 ----KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 608 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
+...|..+..++...|++++|...++++++++|+++.++..++.+|...|++++|.+...+
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6889999999999999999999999999999999999999999999999999999875543
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.33 E-value=5.3e-11 Score=118.96 Aligned_cols=205 Identities=9% Similarity=0.033 Sum_probs=152.7
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
...|..+...+...|++++|++.|+++.. ..| .+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~----------------------------------~~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE---IDP----------------------------------SSADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH---HCT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCC----------------------------------ChHHHHHHHHH
Confidence 44566667777777777777777777665 122 23445566667
Q ss_pred HhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLV 557 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~ 557 (812)
.|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+...+.. .|++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~ 157 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ--MKKP 157 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--TTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH--cCCH
Confidence 77777777777777766543 35667777888888888888888888888774455654 556666667777 8888
Q ss_pred HHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040319 558 DSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKH 634 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 634 (812)
++|.++|+.+.+. .| +...+..++.++.+.|++++|.+.++++. ..| +...|..+...+...|+.+.|...+++
T Consensus 158 ~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 158 AQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888888887762 34 36778888899999999999999988854 344 567788888889999999999999999
Q ss_pred HHccCCCCCchHHH
Q 040319 635 ILAMEPQDPATYIL 648 (812)
Q Consensus 635 ~~~~~p~~~~~~~~ 648 (812)
++++.|+++.....
T Consensus 235 ~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 235 LKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHCTTSHHHHHH
T ss_pred HHHHCCCCHHHHHH
Confidence 99999987765543
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.33 E-value=7.9e-12 Score=124.12 Aligned_cols=213 Identities=11% Similarity=0.054 Sum_probs=144.9
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
...|..+...+...|++++|+..|+++.. ..| .+..++..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~---~~~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIE---ENK----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp -------------------CCTTHHHHHT---TCT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHH---hCc----------------------------------ccHHHHHHHHH
Confidence 45566777777777888888877777765 222 23445555666
Q ss_pred HhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLV 557 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~ 557 (812)
.|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+ ..| +...+..+...+.. .|++
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~--~~~~ 141 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVK--LEQP 141 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHH--TSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--hccH
Confidence 67777777777777766543 4567778888888888888888888888887 445 34566667777777 8889
Q ss_pred HHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 558 DSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
++|..+++.+.+.. +.+...+..++.++.+.|++++|++.++++. ..| +..+|..+...+...|+.+.|...++++
T Consensus 142 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 142 KLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999888887621 2346788889999999999999999998864 334 6778999999999999999999999999
Q ss_pred HccCCCCCchHHHHHhhhhhCC
Q 040319 636 LAMEPQDPATYILVSNLYSSSG 657 (812)
Q Consensus 636 ~~~~p~~~~~~~~l~~~y~~~g 657 (812)
++++|+++..+..++.+....|
T Consensus 220 ~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 220 IDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHCTTCHHHHHHHTC------
T ss_pred HccCcchHHHHHHHHHHHhhcc
Confidence 9999999988888877665544
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=3.1e-11 Score=114.17 Aligned_cols=162 Identities=11% Similarity=0.069 Sum_probs=127.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchH
Q 040319 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHY 580 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y 580 (812)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++.. .|++++|...++.... ..| +...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~--~~~~~~a~~~~~~~~~---~~~~~~~~~ 76 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMD--IGLPNDAIESLKKFVV---LDTTSAEAY 76 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh---cCchhHHHH
Confidence 456677777888888888888888888877 56765 556666667777 7888888888877765 233 35666
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
..+...+...+++++|.+.+++.. ..| +..+|..+...+...|+.++|+..++++++++|+++.++..++.+|.+.|+
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 777777888888888888877754 344 577888888888899999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHh
Q 040319 659 WHNSELVREDMRE 671 (812)
Q Consensus 659 ~~~a~~~~~~m~~ 671 (812)
+++|.+.+++.-+
T Consensus 157 ~~~A~~~~~~al~ 169 (184)
T 3vtx_A 157 RDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888754
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.33 E-value=5.3e-11 Score=116.36 Aligned_cols=207 Identities=12% Similarity=-0.017 Sum_probs=153.7
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
...|..+...+...|++++|++.|+++.. ..| .+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALK---SDP----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCc----------------------------------cchHHHHHHHH
Confidence 44556666666666666666666666554 222 23445666777
Q ss_pred HhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCch
Q 040319 482 MYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH-RQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~ 556 (812)
.|...|++++|...|+++.+ .+...|..+...|... |++++|+..|+++.+.+..|+. ..+..+..++.. .|+
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 128 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK--QGQ 128 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH--TTC
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH--cCC
Confidence 77777777777777776543 4567788888888888 8999999999988884445554 566667777777 899
Q ss_pred HHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040319 557 VDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQ--PKVSVWRALLDSCRIRLNTTIGKRVA 632 (812)
Q Consensus 557 ~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~--p~~~~~~~ll~~~~~~~~~~~a~~~~ 632 (812)
+++|...|+.+.+. .|+ ...+..++.++.+.|++++|.+.++++. .. .+...|..+...+...|+.+.+...+
T Consensus 129 ~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 129 FGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999888762 343 7788889999999999999999988864 33 45667777777788999999999999
Q ss_pred HHHHccCCCCCchHHHHH
Q 040319 633 KHILAMEPQDPATYILVS 650 (812)
Q Consensus 633 ~~~~~~~p~~~~~~~~l~ 650 (812)
+.+.+..|+++.....+.
T Consensus 206 ~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 206 AQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHCTTCHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHhc
Confidence 999999999887766553
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.31 E-value=7.7e-11 Score=128.71 Aligned_cols=189 Identities=11% Similarity=-0.008 Sum_probs=135.7
Q ss_pred chhHHHHHHHHhhhcC---CHHHHHHHHccCCC---CChhHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHH
Q 040319 472 DLGVANSMVSMYFKCC---NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH----RQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g---~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
++..+..|..+|.+.| +.++|...|++..+ ++...+..|...|... +++++|++.|++.. .| +...
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 3346677777777777 77778777776543 3444446666666544 67888888888876 32 2233
Q ss_pred HHHHHHH-h--cCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcC-----ChHHHHHHHHhCCCCCCHHHHH
Q 040319 542 FVLIISA-Y--RYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWG-----FLEEAEETINNMPFQPKVSVWR 613 (812)
Q Consensus 542 ~~~ll~a-~--~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g-----~~~~A~~~~~~m~~~p~~~~~~ 613 (812)
+..+-.. + .. .|+.++|.++|+...+ .| +...+..|..+|. .| ++++|++.+++.. ..++..+.
T Consensus 251 ~~~Lg~~~~~~~~--~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~ 322 (452)
T 3e4b_A 251 WVSLAQLLYDFPE--LGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADY 322 (452)
T ss_dssp HHHHHHHHHHSGG--GCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHH
T ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHH
Confidence 3333333 2 34 6888899998888775 22 5667777777776 55 8999999999987 55777777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh----CCCcchHHHHHHHHHhCCC
Q 040319 614 ALLDSCRI----RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS----SGRWHNSELVREDMREKGF 674 (812)
Q Consensus 614 ~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 674 (812)
.|...|.. ..|.++|...++++.+. .++.+...|+.+|.. ..+.++|..++++..+.|.
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 77766665 34999999999998874 567889999999985 4588899999998877664
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.31 E-value=1.1e-11 Score=131.29 Aligned_cols=221 Identities=10% Similarity=0.024 Sum_probs=189.3
Q ss_pred hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCC-HHHHHHHHccCCC---CChhHHHHHHHHHH
Q 040319 440 ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCN-MSNAIKAFNKMPS---HDIVSWNGLIAGHL 515 (812)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~-~~~A~~~f~~~~~---~~~~~~~~li~~~~ 515 (812)
.+..+-..+...|+++.|...+..+++.. +.+..+|+.+...|.+.|+ +++|...|+++.. .+...|+.+...|.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45556667788899999999999999865 3467889999999999997 9999999998765 56789999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhh-cCC
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGY-WGF 592 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~-~g~ 592 (812)
..|++++|+..|+++++ +.|+. ..|..+..++.. .|++++|+..|+.+.+ +.|+ ...|+.+..+|.+ .|.
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~--~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQE--FKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHH--cCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999 77866 677778778888 9999999999999987 4564 7889999999999 677
Q ss_pred hHHH-----HHHHHhCC-CCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCC------
Q 040319 593 LEEA-----EETINNMP-FQP-KVSVWRALLDSCRIRL--NTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG------ 657 (812)
Q Consensus 593 ~~~A-----~~~~~~m~-~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------ 657 (812)
.++| ++.+++.. +.| +...|..+...+...| +.+.|...++++ +.+|+++.++..|+++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 6888 47777754 566 6789999999888887 689999999998 999999999999999999985
Q ss_pred ---CcchHHHHHHHH
Q 040319 658 ---RWHNSELVREDM 669 (812)
Q Consensus 658 ---~~~~a~~~~~~m 669 (812)
.+++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 358999999987
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.30 E-value=2.2e-11 Score=123.48 Aligned_cols=217 Identities=11% Similarity=-0.043 Sum_probs=180.1
Q ss_pred hcCccchHHHHHHHHHHHHhCCC---CchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChH
Q 040319 448 CGTLGFHEMGKQIHSYALKTGFS---SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGD 521 (812)
Q Consensus 448 ~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 521 (812)
....++++.|...+..+++.... .+..++..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 34568899999999999886421 2567888899999999999999999998754 46789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHH
Q 040319 522 EALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETI 600 (812)
Q Consensus 522 ~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~ 600 (812)
+|++.|+++++ ..|+ ...+..+...+.. .|++++|.++|+.+.+ +.|+...+..+...+.+.|++++|...+
T Consensus 95 ~A~~~~~~al~--~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 95 AAYEAFDSVLE--LDPTYNYAHLNRGIALYY--GGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHH--HCTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHh--cCccccHHHHHHHHHHHH--hccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999 5665 5778888888888 9999999999999987 4576666666666778889999999999
Q ss_pred HhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 601 NNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ----DPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 601 ~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
++.. .+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.+++..+.
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 7643 334444444 677777888999999999999988774 3688999999999999999999999998654
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.29 E-value=8.1e-11 Score=119.10 Aligned_cols=226 Identities=8% Similarity=-0.058 Sum_probs=166.1
Q ss_pred HHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCcee----eeHHHHHH
Q 040319 336 TLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSI----IWTSMICG 411 (812)
Q Consensus 336 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~----~~~~li~~ 411 (812)
.+...-..+...|+++.|...+..+++... .+..++..+...|...|++++|...|++....+++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344455667889999999999999988643 3455788888999999999999999988763222222 37888999
Q ss_pred HHHcCChhhHHHHHHHhcccCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHH-HHhhhcCCH
Q 040319 412 YARSGKPEHAILLFHQSQSEATVVPDE-IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMV-SMYFKCCNM 489 (812)
Q Consensus 412 ~~~~g~~~~A~~~~~~m~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li-~~y~k~g~~ 489 (812)
|...|++++|++.|++... ..|+. ..+..+...+...|+++.|...+..+++.. +.+..++..+. ..|.+ +++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-~~~ 158 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVD---RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN-KEY 158 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHcccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999987 44443 577788889999999999999999888753 44667777777 55554 599
Q ss_pred HHHHHHHccCCC---CChhHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHhcCCCCch
Q 040319 490 SNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ---GDEALAVWSSMEKAS-IKPDA------ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 490 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~pd~------~t~~~ll~a~~~~~~g~ 556 (812)
++|...|+++.+ .+...|..+...+...|+ +++|+..|++..+.. -.|+. .++..+...+.. .|+
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 236 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI--NRD 236 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH--TTC
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH--cCC
Confidence 999999998765 346778888888888888 788888888887721 11331 233334444444 455
Q ss_pred HHHHHHHHHHhhh
Q 040319 557 VDSCRKLFLSMKT 569 (812)
Q Consensus 557 ~~~a~~~~~~m~~ 569 (812)
+++|.++|+...+
T Consensus 237 ~~~A~~~~~~al~ 249 (272)
T 3u4t_A 237 KVKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555554443
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=8.1e-12 Score=135.19 Aligned_cols=197 Identities=10% Similarity=-0.024 Sum_probs=139.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC---------CChhHHHHHHHHHHhcCC-----------------hHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS---------HDIVSWNGLIAGHLLHRQ-----------------GDEALAV 526 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~l 526 (812)
..++..+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 34556667777777777777777765433 123467777777888888 7888887
Q ss_pred HHHHHHC----CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChHHHH
Q 040319 527 WSSMEKA----SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEEAE 597 (812)
Q Consensus 527 ~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~ 597 (812)
+++..+. +-.|.. .++..+...+.. .|++++|.++|+...+...-.++ ...+..+..+|...|++++|.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYL--LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 7776542 111222 355666667777 88888888888877652211112 237788888889999999998
Q ss_pred HHHHhCC-CC---C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHhhhhhCCCcchHH
Q 040319 598 ETINNMP-FQ---P----KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PATYILVSNLYSSSGRWHNSE 663 (812)
Q Consensus 598 ~~~~~m~-~~---p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~ 663 (812)
+.+++.. .. + ...++..+...+...|+.+.|...+++++++.++. ...+..++.+|...|++++|.
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 8887753 11 1 14577778888889999999999999998875543 347888999999999999999
Q ss_pred HHHHHHHh
Q 040319 664 LVREDMRE 671 (812)
Q Consensus 664 ~~~~~m~~ 671 (812)
+.+++..+
T Consensus 364 ~~~~~al~ 371 (411)
T 4a1s_A 364 KYAEQHLQ 371 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888744
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=2.8e-11 Score=138.45 Aligned_cols=161 Identities=13% Similarity=0.127 Sum_probs=136.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHH
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYA 581 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 581 (812)
..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.. .|++++|++.|++..+ +.|+ ...|.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~--~g~~~eA~~~~~~Al~---l~P~~~~a~~ 81 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQ--QGKLQEALMHYKEAIR---ISPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHH
Confidence 45778888888888888888888888888 67775 667777778877 8888888888888876 4565 67888
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCc
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRW 659 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 659 (812)
.+..+|.+.|++++|++.+++.. +.| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 88889999999999998888854 566 5778999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHh
Q 040319 660 HNSELVREDMRE 671 (812)
Q Consensus 660 ~~a~~~~~~m~~ 671 (812)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877643
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=1.6e-11 Score=132.34 Aligned_cols=197 Identities=12% Similarity=0.013 Sum_probs=135.4
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAGHLLHRQ--------------------GDEA 523 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 523 (812)
..++..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34556666777777777777777665543 22 3467777777777788 7888
Q ss_pred HHHHHHHHHC----CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChH
Q 040319 524 LAVWSSMEKA----SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 524 ~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~ 594 (812)
++.+++..+. +-.|.. .++..+...+.. .|++++|..+|+...+...-.++ ...|..+..+|...|+++
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL--LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 8777776541 112222 345666666777 78888888888877652211122 337778888888888888
Q ss_pred HHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHhhhhhCCCcc
Q 040319 595 EAEETINNMP-F---QPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PATYILVSNLYSSSGRWH 660 (812)
Q Consensus 595 ~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~ 660 (812)
+|.+.+++.. . .++ ..++..+...+...|+++.|...+++++++.|.. ...+..++.+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 8888887643 1 111 4567777778888899999999888888875543 457788889999999999
Q ss_pred hHHHHHHHHHh
Q 040319 661 NSELVREDMRE 671 (812)
Q Consensus 661 ~a~~~~~~m~~ 671 (812)
+|.+.+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887643
No 58
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.27 E-value=4.8e-11 Score=116.23 Aligned_cols=63 Identities=16% Similarity=-0.016 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcc
Q 040319 368 NDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQS 430 (812)
Q Consensus 368 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (812)
+...+..+...|.+.|++++|...|++.... +++...|..+...+.+.|++++|+..|++...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444555555555555555555543211 22344455555555555555555555555444
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.27 E-value=1.8e-10 Score=125.77 Aligned_cols=282 Identities=10% Similarity=-0.023 Sum_probs=184.9
Q ss_pred HHHHHHHhcCCH---HHHHHHHhcCCCCCCceeeeHHHHHHHHHcC-----ChhhHHHHHHHhcccCCCCCChhhHHHHH
Q 040319 374 ALLDMLTRCGRM---ADAEKMFYRWPTDRDDSIIWTSMICGYARSG-----KPEHAILLFHQSQSEATVVPDEIALTSVL 445 (812)
Q Consensus 374 ~Li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~g~~p~~~t~~~ll 445 (812)
.|..+|...|+. ++|...|++.. .. +...+..+...+...+ ++++|+..|++... .|... .+..+-
T Consensus 40 ~Lg~~y~~~g~~~d~~~A~~~~~~A~-~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~-~g~~~---A~~~Lg 113 (452)
T 3e4b_A 40 GLADIQVGTRDPAQIKQAEATYRAAA-DT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA-NGEGN---TLIPLA 113 (452)
T ss_dssp TCC------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH-TTCSS---CHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHH-hC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH-CCCHH---HHHHHH
Confidence 344455556666 78888887776 44 4666777766555554 66788888888776 44322 333344
Q ss_pred HHhcCccch---HHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcC----CHHHHHHHHccCCCCChhHHHHHHHHHHhcC
Q 040319 446 GVCGTLGFH---EMGKQIHSYALKTGFSSDLGVANSMVSMYFKCC----NMSNAIKAFNKMPSHDIVSWNGLIAGHLLHR 518 (812)
Q Consensus 446 ~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g----~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 518 (812)
..+...+.. ..+.+.+......| ++.....|..+|...+ ..+.|..++......++..+..|...|...|
T Consensus 114 ~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 114 MLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQ 190 (452)
T ss_dssp HHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444333332 23444444444444 3556677888888887 4556666777777777779999999999999
Q ss_pred ---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCC--CCchHHHHHHHHHHhhhhcCccCCcchHHHHHHH-H--hhc
Q 040319 519 ---QGDEALAVWSSMEKASIKPDAITFVLIISAYRYT--NLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSV-L--GYW 590 (812)
Q Consensus 519 ---~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~-l--~~~ 590 (812)
+.++|++.|++..+.| .++...+..+...|... ..+++++|.++|+... .-++..+..|..+ | ...
T Consensus 191 ~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGG
T ss_pred CcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCC
Confidence 9999999999999976 34444444555555440 0268999999999875 3457778888887 4 568
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHccCCCCCchHHHHHhhhhh----CCCcch
Q 040319 591 GFLEEAEETINNMPFQPKVSVWRALLDSCRIRL-----NTTIGKRVAKHILAMEPQDPATYILVSNLYSS----SGRWHN 661 (812)
Q Consensus 591 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~ 661 (812)
|++++|++.+++..-..+...+..|...|. .| |.++|...++++. |.++.++..|+.+|.. ..++++
T Consensus 265 ~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 999999999998653346777777777776 66 9999999999998 8899999999999988 348999
Q ss_pred HHHHHHHHHhCCC
Q 040319 662 SELVREDMREKGF 674 (812)
Q Consensus 662 a~~~~~~m~~~g~ 674 (812)
|.+++++.-+.|.
T Consensus 341 A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 341 ALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhCh
Confidence 9999999877654
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=1.3e-11 Score=128.92 Aligned_cols=197 Identities=12% Similarity=0.016 Sum_probs=143.7
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAGHLLHRQ--------------------GDEA 523 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 523 (812)
..++..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 44566677778888888888877766543 22 3367777888888888 8888
Q ss_pred HHHHHHHHHC----CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChH
Q 040319 524 LAVWSSMEKA----SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 524 ~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~ 594 (812)
++.+++.... +..|.. .++..+...+.. .|++++|.++++...+...-.++ ...+..+..++.+.|+++
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL--LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 8888776542 112222 355666667777 88999999988877652211122 337888889999999999
Q ss_pred HHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHhhhhhCCCcc
Q 040319 595 EAEETINNMP-F---QPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PATYILVSNLYSSSGRWH 660 (812)
Q Consensus 595 ~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~ 660 (812)
+|.+.+++.. . .++ ..++..+...+...|+.+.|...+++++++.|.. ...+..++.+|.+.|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 9999888753 1 112 5577778888999999999999999998876543 347889999999999999
Q ss_pred hHHHHHHHHHh
Q 040319 661 NSELVREDMRE 671 (812)
Q Consensus 661 ~a~~~~~~m~~ 671 (812)
+|.+.+++..+
T Consensus 321 ~A~~~~~~a~~ 331 (338)
T 3ro2_A 321 QAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.25 E-value=7.9e-10 Score=111.98 Aligned_cols=225 Identities=9% Similarity=-0.065 Sum_probs=137.4
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
..++..+...|...|++++|++.|++..+ . .+...+..|..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~--------------------------------------~~~~a~~~lg~ 46 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD-L--------------------------------------KENSGCFNLGV 46 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T--------------------------------------TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH-C--------------------------------------CCHHHHHHHHH
Confidence 44555566666666666666666666554 1 12233344444
Q ss_pred Hhhh----cCCHHHHHHHHccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC-
Q 040319 482 MYFK----CCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLL----HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY- 551 (812)
Q Consensus 482 ~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~- 551 (812)
+|.. .|++++|...|++..+ .+..+|..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 5555555555554432 345555556666666 666666666666666643 33333333333321
Q ss_pred -CCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 040319 552 -TNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGY----WGFLEEAEETINNMPFQPKVSVWRALLDSCRI----R 622 (812)
Q Consensus 552 -~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 622 (812)
...|++++|.++|+...+ .+ +...+..+..+|.+ .+++++|++.+++..-..+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 004566666666666654 11 34555666666666 67777777777664422345666677777777 7
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh----CCCcchHHHHHHHHHhCCC
Q 040319 623 LNTTIGKRVAKHILAMEPQDPATYILVSNLYSS----SGRWHNSELVREDMREKGF 674 (812)
Q Consensus 623 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 674 (812)
++.++|...++++++.+| +..+..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888888766 6678888888888 8888888888888766543
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=6.2e-11 Score=112.08 Aligned_cols=165 Identities=11% Similarity=0.079 Sum_probs=141.7
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIIS 547 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 547 (812)
+..+|..|...|.+.|++++|...|++..+ .++.+|..+...|...|++++|+..+++... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 567888999999999999999999998764 5678899999999999999999999999988 56665 44555555
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN 624 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~ 624 (812)
.+.. .++++++.+.+....+ +.|+ ...+..+..+|.+.|++++|++.+++.. ..| +..+|..+..++...|+
T Consensus 82 ~~~~--~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 82 ANFM--IDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHH--cCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 6667 8999999999998876 3444 7788999999999999999999999865 555 67899999999999999
Q ss_pred HHHHHHHHHHHHccCCCCC
Q 040319 625 TTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~~~ 643 (812)
.++|...++++++++|+++
T Consensus 157 ~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCCccCH
Confidence 9999999999999999754
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.21 E-value=2.3e-11 Score=131.11 Aligned_cols=186 Identities=12% Similarity=0.028 Sum_probs=133.0
Q ss_pred hHHHHHHHHhhhcCC--------------------HHHHHHHHccCCC-----C----ChhHHHHHHHHHHhcCChHHHH
Q 040319 474 GVANSMVSMYFKCCN--------------------MSNAIKAFNKMPS-----H----DIVSWNGLIAGHLLHRQGDEAL 524 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~--------------------~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~ 524 (812)
.++..+...|...|+ +++|...|++... + ...+|..+...|...|++++|+
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 355666667777777 6776666654322 1 1346778888888899999999
Q ss_pred HHHHHHHHCC-CCCC----HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChHH
Q 040319 525 AVWSSMEKAS-IKPD----AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEE 595 (812)
Q Consensus 525 ~l~~~m~~~g-~~pd----~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~ 595 (812)
+.|++..+.. -.++ ..++..+...+.. .|++++|..+++...+...-.++ ...+..+..+|.+.|++++
T Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 285 (406)
T 3sf4_A 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 285 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHH
Confidence 9888887521 0122 1356667777777 89999999998877642111111 5678888999999999999
Q ss_pred HHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC------CCchHHHHHhhhhhCCCcch
Q 040319 596 AEETINNMP----FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ------DPATYILVSNLYSSSGRWHN 661 (812)
Q Consensus 596 A~~~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~ 661 (812)
|.+.+++.. ..++ ..++..+...+...|+.+.|...+++++++.+. ...++..++.+|...|+...
T Consensus 286 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 286 AIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999988753 1122 557778888899999999999999999987433 35578889999998887654
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=1.3e-09 Score=112.60 Aligned_cols=216 Identities=8% Similarity=-0.012 Sum_probs=152.2
Q ss_pred hhHHHHHHHhcccCCCCCChh-hHHHHHHHhc-------Cccch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 040319 419 EHAILLFHQSQSEATVVPDEI-ALTSVLGVCG-------TLGFH-------EMGKQIHSYALKTGFSSDLGVANSMVSMY 483 (812)
Q Consensus 419 ~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 483 (812)
++|+..|++... ..|+.. .|..+...+. ..|+. ++|..+++.+++.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~---~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLL---VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 456666666655 334332 3333333332 23554 67777777777632233566788888888
Q ss_pred hhcCCHHHHHHHHccCCC--CC-hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-hcCCCCchH
Q 040319 484 FKCCNMSNAIKAFNKMPS--HD-IV-SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISA-YRYTNLNLV 557 (812)
Q Consensus 484 ~k~g~~~~A~~~f~~~~~--~~-~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a-~~~~~~g~~ 557 (812)
.+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++.++ ..|+. ..|...... +.. .|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~--~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYC--SKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHT--SCCH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHH--cCCH
Confidence 888899999888887665 33 33 788888888889999999999999888 44443 333333222 223 5889
Q ss_pred HHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 558 DSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP----FQP--KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~----~~p--~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
++|.++|+...+. .| +...|..+++.+.+.|++++|..+|++.. ++| ...+|..++.....+|+.+.|..
T Consensus 186 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 186 SVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999888763 34 46788888888999999999999988853 254 36688888888888999999999
Q ss_pred HHHHHHccCCCCCc
Q 040319 631 VAKHILAMEPQDPA 644 (812)
Q Consensus 631 ~~~~~~~~~p~~~~ 644 (812)
+++++++..|+++.
T Consensus 263 ~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 263 VEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHTTTTTS
T ss_pred HHHHHHHHcccccc
Confidence 99999999887654
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.17 E-value=4.7e-08 Score=110.35 Aligned_cols=226 Identities=8% Similarity=0.026 Sum_probs=128.8
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHH-HHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 040319 318 ALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSE-QIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWP 396 (812)
Q Consensus 318 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 396 (812)
+..+|++.+..- .-+...+.....-+...++.+.+. .+++..+.. .+.+..++-..+..+-+.|+++.|.++|+++.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345566665542 223333444444444556666664 777777653 23455556666777777777777777776654
Q ss_pred CC-----------CC------------ceeeeHHHHHHHHHcCChhhHHHHHHHhcccC-C-CCCChhhHHHHHHHhcCc
Q 040319 397 TD-----------RD------------DSIIWTSMICGYARSGKPEHAILLFHQSQSEA-T-VVPDEIALTSVLGVCGTL 451 (812)
Q Consensus 397 ~~-----------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g-~~p~~~t~~~ll~a~~~~ 451 (812)
.. .| ....|...+....+.|..+.|..+|.+..+ . + ..+......+.+.-. ..
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE~~-~~ 483 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIEYH-IS 483 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHHHT-TT
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHH-hC
Confidence 11 01 122466666666666777777777777765 2 1 111112222222211 12
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C----ChhHHHHHHHHHHhcCChHHHHH
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H----DIVSWNGLIAGHLLHRQGDEALA 525 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~ 525 (812)
++.+.|+.+++..++. ++.+...+...++.....|+.+.|+.+|+.... | ....|...+.--.++|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3467777777777665 344555666667766777777777777776554 2 22466666666677777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhc
Q 040319 526 VWSSMEKASIKPDAITFVLIISAYR 550 (812)
Q Consensus 526 l~~~m~~~g~~pd~~t~~~ll~a~~ 550 (812)
+.+++.+ ..|+......+..-|.
T Consensus 563 v~~R~~~--~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 563 LEKRFFE--KFPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHH--HSTTCCHHHHHHHHTC
T ss_pred HHHHHHH--hCCCCcHHHHHHHHhc
Confidence 7777777 4555544444444443
No 66
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.16 E-value=1.9e-09 Score=109.09 Aligned_cols=218 Identities=13% Similarity=-0.042 Sum_probs=124.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhcc----chhhhhHHHHHhhHHHhcCCCchhHHHHHHH
Q 040319 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGL----IMEAKLSEQIHGFVMKFGLGSNDCIEAALLD 377 (812)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 377 (812)
+..+...|...|++++|+..|++..+.+ +...+..+-..+.. .++++.|...+....+.+ +...+..|..
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 3344444444444444444444444411 12222223233333 444444444444444433 3444555555
Q ss_pred HHHh----cCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHH----cCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhc
Q 040319 378 MLTR----CGRMADAEKMFYRWPTDRDDSIIWTSMICGYAR----SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCG 449 (812)
Q Consensus 378 ~y~~----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~ 449 (812)
+|.. .+++++|.+.|++.. ..++..++..+...|.. .+++++|++.|++..+ .+ +...+..+-..+.
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKAC-DLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHH-HcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHH
Confidence 6666 677777777776655 33335666666666666 6777777777777665 33 2333444444444
Q ss_pred C----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh----cCCHHHHHHHHccCCC-CChhHHHHHHHHHHh----
Q 040319 450 T----LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFK----CCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLL---- 516 (812)
Q Consensus 450 ~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~---- 516 (812)
. .++.++|...+....+.+ +...+..+..+|.+ .+++++|...|++..+ .+...+..+...|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCc
Confidence 4 666677777766666653 34556667777777 7777777777776543 335666777777777
Q ss_pred cCChHHHHHHHHHHHHC
Q 040319 517 HRQGDEALAVWSSMEKA 533 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~ 533 (812)
.+++++|++.|++..+.
T Consensus 235 ~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SCCSTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 77788888888877773
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.15 E-value=3.4e-08 Score=111.57 Aligned_cols=440 Identities=9% Similarity=0.016 Sum_probs=277.8
Q ss_pred ChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHH
Q 040319 181 EYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGR---VKDVV 257 (812)
Q Consensus 181 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 257 (812)
...+.+..|+.-+... +-|..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.|. .+.+.
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3445555555542442 457788999999998899999999999999986 57778889999999889888 99999
Q ss_pred HHHhcCC--C---CcchhHHHHHHHHHhhCCh--------hHHHHHhccCC------CC-CcccHHHHHHHHHh------
Q 040319 258 ALLERMP--V---MDIITLTEIIIAYMEFGYV--------DLAVEIFDKMP------EK-NSVSYNALLAGYCK------ 311 (812)
Q Consensus 258 ~l~~~~~--~---~~~~~~~~li~~~~~~g~~--------~~A~~~f~~m~------~~-d~~~~~~li~~~~~------ 311 (812)
.+|++.. . +++..|...+.-..+.++. +...++|+... ++ +...|...+.-...
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999864 2 6777787777766555543 22335665421 22 23467776654332
Q ss_pred ---CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHH
Q 040319 312 ---NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADA 388 (812)
Q Consensus 312 ---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 388 (812)
.++.+.+..+|++.+......-..+|..... +.+.-+...+..++... ...++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~A 261 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHH
Confidence 2345667777777764221111222221111 11100111111111110 0112222
Q ss_pred HHHHhc-------CCC---CC---------C--c------eeeeHHHHHHHHHcC-------ChhhHHHHHHHhcccCCC
Q 040319 389 EKMFYR-------WPT---DR---------D--D------SIIWTSMICGYARSG-------KPEHAILLFHQSQSEATV 434 (812)
Q Consensus 389 ~~~f~~-------~~~---~~---------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~g~ 434 (812)
...+.+ +.. .. | + ...|...+.---..+ ....+..+|++.... .
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~ 339 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--V 339 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--c
Confidence 222221 110 00 0 0 123444443322222 123345667777651 2
Q ss_pred CCChhhHHHHHHHhcCccchHHHH-HHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC------------
Q 040319 435 VPDEIALTSVLGVCGTLGFHEMGK-QIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS------------ 501 (812)
Q Consensus 435 ~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------------ 501 (812)
.-+...|.....-+...|+.+.|. .+++..+.. .+.+...+-.++..+-+.|+++.|..+|+.+..
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 223445555556666678888886 999999874 345677788889999999999999999987753
Q ss_pred -CC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040319 502 -HD------------IVSWNGLIAGHLLHRQGDEALAVWSSMEKA-S-IKPDAITFVLIISAYRYTNLNLVDSCRKLFLS 566 (812)
Q Consensus 502 -~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~ 566 (812)
|+ ...|-..+....+.|..+.|.++|.+.++. + ..+......+.+.- .. .++.+.|.++|+.
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~--~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HI--SKDTKTACKVLEL 495 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TT--TSCCHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-Hh--CCCHHHHHHHHHH
Confidence 31 236888888888899999999999999985 2 12222333333332 22 3568999999999
Q ss_pred hhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 567 MKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP----KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 567 m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
..+.+ .-+...|...++.+...|+.+.|..+|++.. ..| ...+|..++.--..+|+.+.+..+.+++.+..|+
T Consensus 496 ~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 496 GLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88743 3346677899999999999999999999855 233 3568999999999999999999999999999998
Q ss_pred CCchHHHHHhhhh
Q 040319 642 DPATYILVSNLYS 654 (812)
Q Consensus 642 ~~~~~~~l~~~y~ 654 (812)
++ ....+++=|.
T Consensus 574 ~~-~~~~f~~ry~ 585 (679)
T 4e6h_A 574 VN-KLEEFTNKYK 585 (679)
T ss_dssp CC-HHHHHHHHTC
T ss_pred Cc-HHHHHHHHhc
Confidence 65 3444444443
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.15 E-value=1.4e-10 Score=125.45 Aligned_cols=262 Identities=11% Similarity=0.017 Sum_probs=163.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCC-ce----eeeHHHHHHHHHcCChhhHHHHHHHhccc---CCCCC-ChhhHHHHHH
Q 040319 376 LDMLTRCGRMADAEKMFYRWPTDRD-DS----IIWTSMICGYARSGKPEHAILLFHQSQSE---ATVVP-DEIALTSVLG 446 (812)
Q Consensus 376 i~~y~~~g~~~~A~~~f~~~~~~~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~t~~~ll~ 446 (812)
...|...|++++|...|++.....+ +. ..|..+...|...|++++|+..|++.... .+-.| ....+..+..
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3344455555555555544321111 11 23444555555555555555555544330 00011 1123344444
Q ss_pred HhcCccchHHHHHHHHHHHHh----C-CCCchhHHHHHHHHhhhcCC-----------------HHHHHHHHccCCC---
Q 040319 447 VCGTLGFHEMGKQIHSYALKT----G-FSSDLGVANSMVSMYFKCCN-----------------MSNAIKAFNKMPS--- 501 (812)
Q Consensus 447 a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~Li~~y~k~g~-----------------~~~A~~~f~~~~~--- 501 (812)
.+...|+++.|...+..+.+. + ......++..+...|...|+ +++|...|++..+
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554432 1 11234466667777777787 7777777765432
Q ss_pred --C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---C----HHHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 502 --H----DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP---D----AITFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 502 --~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d----~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
. ....|..+...|...|++++|++.|++..+ +.| + ..++..+...+.. .|++++|..+|+...
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR--IAREFGDRAAERRANSNLGNSHIF--LGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHH--CcCHHHHHHHHHHHH
Confidence 1 234777888889999999999999998876 222 2 1266677777888 899999999998776
Q ss_pred hhcCccC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-C------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040319 569 TIYNIEP----TSEHYASLVSVLGYWGFLEEAEETINNMP-F------QP-KVSVWRALLDSCRIRLNTTIGKRVAKHIL 636 (812)
Q Consensus 569 ~~~~~~p----~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 636 (812)
+...-.. ....+..+..++.+.|++++|.+.+++.. . .+ ...++..+...+...|+.+.|...+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5221111 15678889999999999999999988754 1 11 14477778888999999999999999999
Q ss_pred ccCCC
Q 040319 637 AMEPQ 641 (812)
Q Consensus 637 ~~~p~ 641 (812)
++.+.
T Consensus 371 ~~~~~ 375 (411)
T 4a1s_A 371 QLAXX 375 (411)
T ss_dssp HHCCH
T ss_pred HHHhh
Confidence 88764
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.12 E-value=9.4e-10 Score=107.98 Aligned_cols=203 Identities=9% Similarity=-0.027 Sum_probs=110.0
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHH
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHL 515 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 515 (812)
..+...-..+...|+++.|...+..+++...+++...+..+...|.+.|++++|...|++..+ .+...|..+...|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 344444455555666666666666666554324444444456666666666666666655432 23345555666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHH
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDAI--------TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLV 584 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~~--------t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li 584 (812)
..|++++|++.|++.++ ..|+.. .+..+...+.. .|++++|.+.|+...+ +.|+ ...|..+.
T Consensus 88 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQ--AGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHH--hccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 66666666666666665 444432 23333344444 5566666666655544 2333 34455555
Q ss_pred HHHhhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 585 SVLGYWGFL--EEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 585 ~~l~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
.+|...|+. ++|..+. ..+...+..+. ....+++++|...++++++++|+++.+...+..+...
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 555444332 2211111 11222222221 2233455899999999999999998888888776543
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.12 E-value=6.5e-10 Score=104.67 Aligned_cols=159 Identities=12% Similarity=-0.065 Sum_probs=99.0
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYR 550 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 550 (812)
..+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..++++.+ ..|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~----------- 75 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDN----------- 75 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC-----------
Confidence 4455566666666777777777666654 3445566666666666666666666666655 23322
Q ss_pred CCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 040319 551 YTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIG 628 (812)
Q Consensus 551 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a 628 (812)
...+..++..+...|++++|.+.++++. .+.+..+|..+...+...|+.+.|
T Consensus 76 --------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 76 --------------------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence 2333444444444455555554444432 223455666666777777777777
Q ss_pred HHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 629 KRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 130 IDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777776644
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.11 E-value=1.8e-09 Score=111.43 Aligned_cols=212 Identities=8% Similarity=-0.044 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhh-------hcCCH-------HHHHHHHccCCC---C-ChhHHHHHHHHHHh
Q 040319 455 EMGKQIHSYALKTGFSSDLGVANSMVSMYF-------KCCNM-------SNAIKAFNKMPS---H-DIVSWNGLIAGHLL 516 (812)
Q Consensus 455 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~~~~---~-~~~~~~~li~~~~~ 516 (812)
+.|..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887753 456778888777775 35886 899999987543 3 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHh-hcCC
Q 040319 517 HRQGDEALAVWSSMEKASIKPDAI--TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLG-YWGF 592 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~-~~g~ 592 (812)
.|++++|.++|++.++ +.|+.. .|..+...+.. .|++++|..+|++..+ ..| +...|...+.... ..|+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARR--AEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHH--HHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHH--hcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 778653 68888888888 8999999999999986 233 3445554444432 3699
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCC-CCchHHHHHhhhhhCCCcchHHHHH
Q 040319 593 LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAM---EPQ-DPATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
.++|.++|++.. ..| +...|..++..+...|+.+.|+.+++++++. .|+ ....+..+++.+.+.|++++|..+.
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999864 334 6889999999999999999999999999995 553 5678889999999999999999999
Q ss_pred HHHHhCCC
Q 040319 667 EDMREKGF 674 (812)
Q Consensus 667 ~~m~~~g~ 674 (812)
+++.+...
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 99876543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=5.3e-11 Score=122.99 Aligned_cols=238 Identities=14% Similarity=0.097 Sum_probs=116.5
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
..+|..+...|...|++++|+..|+++.. ... .......+....++..+..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~----------------------------~~~~~~~~~~~~~~~~la~ 77 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALE-DLE----------------------------KTSGHDHPDVATMLNILAL 77 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHH----------------------------HHHCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHH----------------------------HHcCCCCHHHHHHHHHHHH
Confidence 45677778888888888888888887765 100 0000001112233444444
Q ss_pred HhhhcCCHHHHHHHHccCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS-----------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA------SIKPDA-ITFV 543 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~t~~ 543 (812)
.|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-.|+. ..+.
T Consensus 78 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 45555555555544443321 11234555555566666666666666655542 112222 3344
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhhhhc-----CccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC----------CCC
Q 040319 544 LIISAYRYTNLNLVDSCRKLFLSMKTIY-----NIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP----------FQP 607 (812)
Q Consensus 544 ~ll~a~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~----------~~p 607 (812)
.+...+.. .|++++|.++|+.+.+.. +-.| ....+..+..+|.+.|++++|.+.++++. ..|
T Consensus 158 ~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 158 NLALLCQN--QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHT--TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 44445555 666666666666554421 0012 13455666666666666666666665532 111
Q ss_pred C-HHHHHH------HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 608 K-VSVWRA------LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 608 ~-~~~~~~------ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
. ...|.. +...+...+....+...++++....|.++..+..++.+|.+.|++++|.+.+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 111111 11222233344444555666666667667777777777777777777777776654
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.09 E-value=2.9e-10 Score=118.60 Aligned_cols=197 Identities=11% Similarity=0.033 Sum_probs=125.8
Q ss_pred HHHHHhcCccchHHHHHHHHHHHHhCC--C---CchhHHHHHHHHhhhcCC--------------------HHHHHHHHc
Q 040319 443 SVLGVCGTLGFHEMGKQIHSYALKTGF--S---SDLGVANSMVSMYFKCCN--------------------MSNAIKAFN 497 (812)
Q Consensus 443 ~ll~a~~~~~~~~~a~~~~~~~~~~g~--~---~~~~~~~~Li~~y~k~g~--------------------~~~A~~~f~ 497 (812)
.+...+...|+++.|...+..+.+... . ....++..+...|...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 333444444555555544444432110 0 012355566666677777 677766665
Q ss_pred cCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcCCCCchHHHHHHH
Q 040319 498 KMPS-----H----DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASI-KPD----AITFVLIISAYRYTNLNLVDSCRKL 563 (812)
Q Consensus 498 ~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~~~g~~~~a~~~ 563 (812)
+... + ....|..+...|...|++++|++.+++..+... .++ ..++..+...+.. .|++++|.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~ 245 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--LGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--HTCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--cCCHHHHHHH
Confidence 5432 1 134677778888888888888888888765210 111 1356666667777 8889999888
Q ss_pred HHHhhhhcCccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 040319 564 FLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEEAEETINNMP-F---QPK----VSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 564 ~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
++...+...-.++ ...+..+..++...|++++|.+.+++.. . .++ ..++..+...+...|+.+.|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8877642111111 5577888899999999999999888753 1 111 44777888889999999999999
Q ss_pred HHHHHccCCC
Q 040319 632 AKHILAMEPQ 641 (812)
Q Consensus 632 ~~~~~~~~p~ 641 (812)
+++++++.++
T Consensus 326 ~~~a~~~~~~ 335 (338)
T 3ro2_A 326 AEKHLEISRE 335 (338)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.08 E-value=7.3e-10 Score=121.74 Aligned_cols=177 Identities=10% Similarity=0.005 Sum_probs=155.3
Q ss_pred HHHHHHHHccCCC---CChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHH
Q 040319 489 MSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQG-DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKL 563 (812)
Q Consensus 489 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~ 563 (812)
+++|...+++... .+...|..+...|...|++ ++|++.|++.++ ..|+. ..+..+..++.. .|++++|.+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~--~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWK--KGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH--cCCHHHHHHH
Confidence 4555556654432 4678899999999999999 999999999999 67774 678888888888 9999999999
Q ss_pred HHHhhhhcCccCCcchHHHHHHHHhhc---------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc--------CC
Q 040319 564 FLSMKTIYNIEPTSEHYASLVSVLGYW---------GFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR--------LN 624 (812)
Q Consensus 564 ~~~m~~~~~~~p~~~~y~~li~~l~~~---------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~--------~~ 624 (812)
|+...+ +.|+...|..+..+|... |++++|++.+++.. ..| +...|..+..++... |+
T Consensus 160 ~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 999986 568888999999999999 99999999999865 555 688999999999988 99
Q ss_pred HHHHHHHHHHHHccCC---CCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 625 TTIGKRVAKHILAMEP---QDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+++|...++++++++| +++..|..++.+|...|++++|.+.+++..+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999988653
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.08 E-value=1.1e-09 Score=116.98 Aligned_cols=163 Identities=10% Similarity=0.017 Sum_probs=92.1
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKPDA- 539 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~- 539 (812)
.+++.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +..|+.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3555666667777777777766665432 11 135666777777777777777777776652 222333
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCC-HHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLVSVLGYWGF---LEEAEETINNMPFQPK-VSVW 612 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~---~~~A~~~~~~m~~~p~-~~~~ 612 (812)
.++..+...+.. .|++++|.++++...+...-.++ ...+..+..++...|+ +++|+.++++....|+ ..++
T Consensus 265 ~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 342 (383)
T 3ulq_A 265 QAYFLITQIHYK--LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 455556666666 67777777777665442111111 2234556666666666 6666666666543332 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAM 638 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 638 (812)
..+...+...|+.+.|...+++++++
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44445555555555555555555544
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=2.4e-09 Score=100.76 Aligned_cols=168 Identities=11% Similarity=-0.021 Sum_probs=125.8
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHH
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHL 515 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 515 (812)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566677888999999999998887643 34678889999999999999999999988654 46778888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 516 LHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
..|++++|.+.|+++.+ ..|+ ...+..+...+.. .|++++|.++|+.+.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~------------------------ 139 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDN--LGRFDEAIDSFKIALGL------------------------ 139 (186)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH------------------------
T ss_pred HhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHH--cCcHHHHHHHHHHHHhc------------------------
Confidence 99999999999999887 3443 3445555555555 66666666666655541
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 595 EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 595 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
.+.+..+|..+...+...|+.+.|...+++++++.|+++..
T Consensus 140 ----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 140 ----------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp ----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred ----------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 12245566677777777788888888888888887776543
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.06 E-value=8.1e-10 Score=118.16 Aligned_cols=222 Identities=9% Similarity=-0.029 Sum_probs=161.5
Q ss_pred HhcCccchHHHHHHHHHHHHh----CCCC-chhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC-----hhHHHHHH
Q 040319 447 VCGTLGFHEMGKQIHSYALKT----GFSS-DLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD-----IVSWNGLI 511 (812)
Q Consensus 447 a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~-----~~~~~~li 511 (812)
.+...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 345566677777666666542 1111 345677888889999999988888776543 22 35788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhh---cCccC-CcchHHH
Q 040319 512 AGHLLHRQGDEALAVWSSMEKASI-KPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTI---YNIEP-TSEHYAS 582 (812)
Q Consensus 512 ~~~~~~g~~~~A~~l~~~m~~~g~-~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~y~~ 582 (812)
..|...|++++|++.|++.++..- .++. .++..+...+.. .|++++|.++|+...+. .+..| ....+..
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS--QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 999999999999999999886311 1121 467778888888 99999999999987651 12213 3667899
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-C-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCCchHHHHHhh
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-F-----QPK-VSVWRALLDSCRIRLN---TTIGKRVAKHILAMEPQDPATYILVSNL 652 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~-----~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 652 (812)
+..++.+.|++++|.+.+++.. + .|. ...+..+...+...|+ .+.|...+++. ...|.....+..++.+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 9999999999999999998854 1 232 2234556666777888 77777777665 3344456678899999
Q ss_pred hhhCCCcchHHHHHHHHHh
Q 040319 653 YSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 653 y~~~g~~~~a~~~~~~m~~ 671 (812)
|...|++++|.+.+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988754
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=2.1e-09 Score=105.45 Aligned_cols=185 Identities=12% Similarity=0.034 Sum_probs=87.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS----HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIIS 547 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 547 (812)
+..+..+...|.+.|++++|...|++..+ ++...|..+...|...|++++|++.|++..+ ..|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 34445555555555555555555554322 3444444455555555555555555555555 44443 33444444
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC-c-------chHHHHHHHHhhcCChHHHHHHHHhCC-CCCC---HHHHHHH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-S-------EHYASLVSVLGYWGFLEEAEETINNMP-FQPK---VSVWRAL 615 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~---~~~~~~l 615 (812)
.+.. .|++++|.+.|+...+ +.|+ . ..|..+...+.+.|++++|++.+++.. ..|+ ...|..+
T Consensus 85 ~~~~--~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRD--MKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHH--TTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHH--cccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 4444 5555555555555544 1232 1 234444445555555555555554432 3343 2233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 616 LDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 616 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...+. ..+...++++..+.+.++..|. .......|.+++|...+++..+
T Consensus 160 ~~~~~-----~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 160 GVLFY-----NNGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 33332 2233334444444443322222 2223333444777777777654
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.05 E-value=1.9e-10 Score=118.78 Aligned_cols=243 Identities=12% Similarity=0.014 Sum_probs=141.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh
Q 040319 368 NDCIEAALLDMLTRCGRMADAEKMFYRWPT---------DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE 438 (812)
Q Consensus 368 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 438 (812)
+..++..+...|...|++++|...|+++.. .+....+|..+...|...|++++|+..|++... ..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~----- 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA-IR----- 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HH-----
Confidence 456788899999999999999999988652 112245677888889999999999999988765 10
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-----------CChhHH
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----------HDIVSW 507 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~ 507 (812)
........+....++..+...|...|++++|...|++..+ .....|
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 -----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp -----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 0000000011223344444555555555555555443321 122445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc------Ccc
Q 040319 508 NGLIAGHLLHRQGDEALAVWSSMEKA------SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY------NIE 574 (812)
Q Consensus 508 ~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~------~~~ 574 (812)
..+...|...|++++|++.|+++.+. +..|+. .++..+...+.. .|++++|.++|+.+.+.. ...
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK--QGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 56666666666677776666666553 113333 345555556666 677777777776665411 111
Q ss_pred CC-------cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 575 PT-------SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 575 p~-------~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
|. ...+..+...+...+.+.+|...++... ..| +..+|..+...+...|+.++|...+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 1222333344455666677777777655 344 4668888999999999999999999999998875
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.97 E-value=4.3e-08 Score=104.13 Aligned_cols=194 Identities=13% Similarity=0.027 Sum_probs=126.8
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C-C-HH
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPS-------H----DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIK--P-D-AI 540 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-d-~~ 540 (812)
...+...|...|++++|...+++... + ....+..+...|...|++++|...+++.....-. | . ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44566667777777777777665432 1 1234556677778888888888888887763211 1 1 23
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHH-----HHHHHHhhcCChHHHHHHHHhCC-CCCC-----H
Q 040319 541 TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYA-----SLVSVLGYWGFLEEAEETINNMP-FQPK-----V 609 (812)
Q Consensus 541 t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-----~li~~l~~~g~~~~A~~~~~~m~-~~p~-----~ 609 (812)
++..+...+.. .|++++|..+++.......-......+. ..+..+...|++++|...+++.. ..|. .
T Consensus 176 ~~~~la~~~~~--~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 176 CLAMLIQCSLA--RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHH--HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 45555556666 7888888888887764211111111222 23344678899999998888864 2221 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..+..+...+...|+.+.|...++++++..+.. ...+..++.+|...|+.++|.+.+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666777888899999999888887764331 13677788999999999999988877643
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.96 E-value=1.3e-09 Score=124.62 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=142.5
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIIS 547 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 547 (812)
+...++.|...|.+.|++++|...|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 567888899999999999999999988764 4578899999999999999999999999999 78876 67888888
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN 624 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~ 624 (812)
++.. .|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++.. +.| +...|..|...+...|+
T Consensus 86 ~l~~--~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 86 TLKE--MQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 8888 9999999999999886 4565 7889999999999999999999999865 667 57789999999999999
Q ss_pred HHHHHHHHHHHHccCCC
Q 040319 625 TTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~ 641 (812)
.+.|++.+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999887654
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=3.1e-09 Score=108.69 Aligned_cols=185 Identities=8% Similarity=-0.053 Sum_probs=128.0
Q ss_pred HHhhhcCCHHHHHHHHccCCC-------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHHH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPS-------H--DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-------AITFVL 544 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-------~~t~~~ 544 (812)
..|...|++++|...|.+..+ + ...+|+.+...|...|++++|+..|++.++ +.|+ ..++..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 456677777777777665432 1 145788888888888999999888888876 3322 246677
Q ss_pred HHHHhcCCCC-chHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH--------H
Q 040319 545 IISAYRYTNL-NLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKV--------S 610 (812)
Q Consensus 545 ll~a~~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~--------~ 610 (812)
+...+.. . |++++|...|++..+...-..+ ...|..+..+|.+.|++++|++.+++.. ..|+. .
T Consensus 123 lg~~~~~--~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 123 LGEILEN--DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHH--TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHH--hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 7777777 7 9999999999887762110111 3568889999999999999999998854 33321 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch-----HHHHHhhhh--hCCCcchHHHHHHHH
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT-----YILVSNLYS--SSGRWHNSELVREDM 669 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~~m 669 (812)
.|..+..++...|+.+.|...++++++++|+.... +..++..|. ..+++++|.+.++++
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 56667777888999999999999999999986553 334555554 456788887777543
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.91 E-value=5.3e-09 Score=105.98 Aligned_cols=221 Identities=13% Similarity=0.071 Sum_probs=151.4
Q ss_pred cCccchHHHHHHHHHHHHh-------CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-----------CChhHHHHH
Q 040319 449 GTLGFHEMGKQIHSYALKT-------GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----------HDIVSWNGL 510 (812)
Q Consensus 449 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~l 510 (812)
...|+++.|...+...++. ..+....++..+...|...|++++|...|++..+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777666642 2233567788899999999999999998876542 224578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc-----CccC-Cc
Q 040319 511 IAGHLLHRQGDEALAVWSSMEKA------SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY-----NIEP-TS 577 (812)
Q Consensus 511 i~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~ 577 (812)
...|...|++++|++.|++..+. .-.|+. .++..+...+.. .|++++|..+|+.+.+.. +-.| ..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN--QGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999873 113443 567777778888 999999999999887631 1123 25
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHccCC
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP----------FQPK-VSVWRALLDSCRIRLN------TTIGKRVAKHILAMEP 640 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~----------~~p~-~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~p 640 (812)
..+..+..++.+.|++++|.+.+++.. ..|. ...|..+.......+. +..+...++......|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 678888999999999999999887643 1232 2344444333333222 2333333333333445
Q ss_pred CCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 641 QDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 641 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..+..+..++.+|...|++++|.+.+++..+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667899999999999999999999988653
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=2.8e-08 Score=99.62 Aligned_cols=204 Identities=9% Similarity=-0.041 Sum_probs=118.5
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA----IT 541 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t 541 (812)
+...+-.+...+.+.|++++|...|+++.+ |+ ...|..+...|...|++++|+..|++.++ ..|+. ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHH
Confidence 344444555556666666666666665543 22 34555556666666666666666666666 33421 12
Q ss_pred HHHHHHHhcC------CCCchHHHHHHHHHHhhhhcCccCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 040319 542 FVLIISAYRY------TNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRA 614 (812)
Q Consensus 542 ~~~ll~a~~~------~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ 614 (812)
+..+..++.. ...|++++|...|+.+.+. .|+. ..+..+..+....+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 2222222211 0035555555555555542 2321 1111111110000000 011355
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHhhhhhC----------CCcchHHHHHHHHHhCCCCCCCcee
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDP---ATYILVSNLYSSS----------GRWHNSELVREDMREKGFRKHPSRS 681 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s 681 (812)
+...+...|+.+.|...++++++..|+++ .++..++.+|... |++++|...+++..+.. |
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p--- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P--- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T---
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C---
Confidence 67778899999999999999999999854 5788999999977 89999999999885532 2
Q ss_pred EEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHH
Q 040319 682 WIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLK 718 (812)
Q Consensus 682 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 718 (812)
.+|...+....+.++...+.+
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 356666777777777776654
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.87 E-value=1e-08 Score=109.31 Aligned_cols=220 Identities=10% Similarity=-0.068 Sum_probs=141.6
Q ss_pred hcCccchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC-----hhHHHHHHH
Q 040319 448 CGTLGFHEMGKQIHSYALKTG--FS---SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD-----IVSWNGLIA 512 (812)
Q Consensus 448 ~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~-----~~~~~~li~ 512 (812)
+...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445667777777776665421 11 1244666777788888888877776665432 11 346777888
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc---CccCCcchHHHHH
Q 040319 513 GHLLHRQGDEALAVWSSMEKA----SIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY---NIEPTSEHYASLV 584 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~y~~li 584 (812)
.|...|++++|++.|++.++. +-.+. ..++..+...+.. .|++++|.++|+...+.. +.+.....+..+.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR--SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 888888888888888877652 11111 1456666667777 888888888888766411 2222256677788
Q ss_pred HHHhhcCChHHHHHHHHhCC------CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 585 SVLGYWGFLEEAEETINNMP------FQPK-VSVWRALLDSCRIRLN---TTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~------~~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
.++.+.|++++|.+.+++.. -.|. ...+..+...+...++ ++.|...+++. ...|.....+..++.+|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 88888888888888887743 1232 2334444444556677 66666666552 223334556778899999
Q ss_pred hCCCcchHHHHHHHHH
Q 040319 655 SSGRWHNSELVREDMR 670 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~ 670 (812)
..|++++|.+.+++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 9999999988887763
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.86 E-value=4.3e-09 Score=95.37 Aligned_cols=140 Identities=12% Similarity=0.015 Sum_probs=86.7
Q ss_pred HHHhhhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCch
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPSH---DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNL 556 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~ 556 (812)
..+|...|++++|...|...... +...|..+...|.+.|++++|++.|++.++ +.|+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~----------------- 64 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERD----------------- 64 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC-----------------
Confidence 34455556666666666554441 233444555566666666666666666655 44443
Q ss_pred HHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH-HHH
Q 040319 557 VDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR-VAK 633 (812)
Q Consensus 557 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~-~~~ 633 (812)
...|..+..+|.+.|++++|+..+++.. +.| +..+|..+...+...|+.+.|.. .++
T Consensus 65 --------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 65 --------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3344444444445555555555554432 345 46677778888888888766554 469
Q ss_pred HHHccCCCCCchHHHHHhhhhhCCC
Q 040319 634 HILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 634 ~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
++++++|+++.+|...+.++...|+
T Consensus 125 ~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 125 RAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999988885
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.85 E-value=9.5e-08 Score=101.70 Aligned_cols=227 Identities=9% Similarity=-0.030 Sum_probs=156.5
Q ss_pred HHHHcCChhhHHHHHHHhcccCCCCCCh----hhHHHHHHHhcCccchHHHHHHHHHHHHhC--C---C-CchhHHHHHH
Q 040319 411 GYARSGKPEHAILLFHQSQSEATVVPDE----IALTSVLGVCGTLGFHEMGKQIHSYALKTG--F---S-SDLGVANSMV 480 (812)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~---~-~~~~~~~~Li 480 (812)
.+...|++++|+..|++......-.++. .++..+-..+...|+++.|...+..+.+.. . . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3456677777777776665411111221 234455556666677777776666655421 1 1 1245667788
Q ss_pred HHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC-HHHHHHHHH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKAS---IKPD-AITFVLIIS 547 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd-~~t~~~ll~ 547 (812)
..|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|++..+.. ..|+ ..++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 889999999999888876543 22 3467888889999999999999999887610 1233 466777777
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLVSVLGYWGF---LEEAEETINNMPFQPK-VSVWRALLDSCR 620 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~ 620 (812)
.+.. .|++++|..+++...+...-.++ ...+..+...+...|+ +++|+..+++....|+ ...+..+...+.
T Consensus 270 ~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 270 TLCK--AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 8888 99999999999988763322222 3456777778888888 8999999998765444 346667777899
Q ss_pred hcCCHHHHHHHHHHHHccC
Q 040319 621 IRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 621 ~~~~~~~a~~~~~~~~~~~ 639 (812)
..|+.+.|...+++++++.
T Consensus 348 ~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=3.1e-07 Score=91.89 Aligned_cols=175 Identities=11% Similarity=0.027 Sum_probs=123.7
Q ss_pred HHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040319 492 AIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSM 567 (812)
Q Consensus 492 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m 567 (812)
|...|++... ++..++..+..++...|++++|++++.+.+..|-.++. ..+..++..+.. .|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~--~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL--NNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence 5566665542 45556667778888888888888888887664432344 445556666777 88888888888888
Q ss_pred hhhcCccC-----CcchHHHHHHH----HhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 568 KTIYNIEP-----TSEHYASLVSV----LGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 568 ~~~~~~~p-----~~~~y~~li~~----l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
.+ ..| +..+...|..+ ....+++.+|..+|+++. ..|+...-..|++++...|++++|+..++.+++
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76 345 23344444433 333448999999999875 345533334455578889999999999998888
Q ss_pred c----------CCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 638 M----------EPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 638 ~----------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
. +|+|+.++..++.++...|+ +|.+++.++++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6 48888888888888888887 8999999987643
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=4.9e-08 Score=99.35 Aligned_cols=172 Identities=6% Similarity=-0.056 Sum_probs=134.1
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 491 NAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 491 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
.....+......+...+..+...+...|++++|+..|++.++ ..|+. ..+..+...+.. .|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~--~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIA--LNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHH--TTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHH--CCCHHHHHHHHHhCch
Confidence 334444444444556677778888889999999999999988 67766 556667777778 8999999999988865
Q ss_pred hcCccCCcchHHHH-HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC--Cc
Q 040319 570 IYNIEPTSEHYASL-VSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD--PA 644 (812)
Q Consensus 570 ~~~~~p~~~~y~~l-i~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 644 (812)
..|+....... .-.+.+.|+.++|.+.+++.. ..| +...+..+...+...|+.+.|...++++++.+|++ +.
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 34654333322 233667788888888887754 455 67899999999999999999999999999999998 88
Q ss_pred hHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 645 TYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 645 ~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
++..|+.+|...|+.++|...+++.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 9999999999999999998876653
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=7.1e-08 Score=110.91 Aligned_cols=167 Identities=10% Similarity=-0.085 Sum_probs=120.2
Q ss_pred hhcCCHHHHHHHHccCC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcC
Q 040319 484 FKCCNMSNAIKAFNKMP-----------SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRY 551 (812)
Q Consensus 484 ~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~ 551 (812)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++.++ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 55677777777666554 23456677777777888888888888888877 56655 455666666666
Q ss_pred CCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 040319 552 TNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIG 628 (812)
Q Consensus 552 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a 628 (812)
.|++++|.+.|++..+ +.|+ ...|..+..+|.+.|++++ ++.+++.. ..| +...|..+..++...|+.++|
T Consensus 480 --~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 480 --TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp --HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 7888888888887765 3453 6677778888888888888 77777754 445 566788888888888888888
Q ss_pred HHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 629 KRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
...++++++++|+++.++..++.+|...|+
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888888877665
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=1.1e-07 Score=92.75 Aligned_cols=183 Identities=11% Similarity=-0.021 Sum_probs=119.4
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI----TF 542 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~ 542 (812)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|...|++++|+..|++.++ ..|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 34455567778888899999888887764 43 24677788888888999999999988888 556542 23
Q ss_pred HHHHHHhcC----------------CCCchHHHHHHHHHHhhhhcCccCCc-chHHHHHHHHhhcCChHHHHHHHHhCCC
Q 040319 543 VLIISAYRY----------------TNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWGFLEEAEETINNMPF 605 (812)
Q Consensus 543 ~~ll~a~~~----------------~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~~~~~m~~ 605 (812)
..+..++.. ...|+.++|...|+.+.+. .|+. ..+..... .+.+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH--------
Confidence 223333321 0134555666666555542 2321 11111110 00000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHhhhhhCCCcchHHHHHHHHHhCCCC
Q 040319 606 QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP---ATYILVSNLYSSSGRWHNSELVREDMREKGFR 675 (812)
Q Consensus 606 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 675 (812)
......+...+...|+.+.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112345567889999999999999999999876 56899999999999999999999998876553
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.73 E-value=7.5e-07 Score=94.46 Aligned_cols=194 Identities=9% Similarity=0.000 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC------CC--C-ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCC--C--Ch
Q 040319 372 EAALLDMLTRCGRMADAEKMFYRWPT------DR--D-DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVV--P--DE 438 (812)
Q Consensus 372 ~~~Li~~y~~~g~~~~A~~~f~~~~~------~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~--p--~~ 438 (812)
...+...|...|++++|...|++... .+ + ....+..+...+...|++++|...+++... .... + ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~ 174 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE-VLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTSCGGGGH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HhhccCcHHHH
Confidence 34455556666776666666654321 11 1 122344555666677777777777766543 1110 1 11
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCc--hhHH-H---HHHHHhhhcCCHHHHHHHHccCCCCC-------hh
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSD--LGVA-N---SMVSMYFKCCNMSNAIKAFNKMPSHD-------IV 505 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~-~---~Li~~y~k~g~~~~A~~~f~~~~~~~-------~~ 505 (812)
.++..+...+...|+++.|...+.......-.++ .... . .++..+...|++++|...+++...++ ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 2344444555666666666666666554311111 1111 1 23344667777777777777665422 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKPDAI-TFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
.+..+...+...|++++|...+++.... |..++.. .+..+..++.. .|+.++|...++...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ--AGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH--hCCHHHHHHHHHHHH
Confidence 3455666777777777777777766542 1111111 23333334444 555555555555443
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.71 E-value=1.1e-07 Score=97.06 Aligned_cols=193 Identities=7% Similarity=-0.082 Sum_probs=128.5
Q ss_pred hcCccchHHHHHHHHHHHHh----CCCC-chhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHH
Q 040319 448 CGTLGFHEMGKQIHSYALKT----GFSS-DLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAG 513 (812)
Q Consensus 448 ~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~ 513 (812)
+...|+++.|...+..+.+. |-++ ...+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555544432 2111 145667777888888888888777766543 11 3578888888
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCc-----chH
Q 040319 514 HLLH-RQGDEALAVWSSMEKASIKPD-------AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS-----EHY 580 (812)
Q Consensus 514 ~~~~-g~~~~A~~l~~~m~~~g~~pd-------~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y 580 (812)
|... |++++|+..|++.++ +.|+ ..++..+...+.. .|++++|..+|+...+...-.+.. ..|
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKAL--DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 8886 999999999998887 4332 2456777778888 899999999999887622111111 156
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHccCCCCCc
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQPKVS------VWRALLDSCR--IRLNTTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~~~~ 644 (812)
..++.++...|++++|...+++.. +.|+.. .+..++.++. ..++++.|...++++.+++|.+..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 778888999999999999998854 455421 3444556664 346788888888888888886433
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.71 E-value=1.2e-07 Score=95.89 Aligned_cols=165 Identities=11% Similarity=-0.016 Sum_probs=99.0
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS-----------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA------SI 535 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 535 (812)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 44556666666677777777666665432 12356677777777788888888888777763 11
Q ss_pred CCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc------CccCC-cchHHHHHHHHhhcC------ChHHHHHHHH
Q 040319 536 KPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY------NIEPT-SEHYASLVSVLGYWG------FLEEAEETIN 601 (812)
Q Consensus 536 ~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~y~~li~~l~~~g------~~~~A~~~~~ 601 (812)
.|+. .++..+...+.. .|++++|..+|+...+.. ...|. ...|..+.......+ .+.++...++
T Consensus 165 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLK--QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp CHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 3433 456666667777 788888888887766421 11222 333444444443333 3445555555
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 602 NMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 602 ~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
... ..| ...++..+...+...|+.++|...+++++++.
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 544 234 35578888888999999999999999998753
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=6.6e-08 Score=90.28 Aligned_cols=154 Identities=10% Similarity=-0.025 Sum_probs=97.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCC
Q 040319 477 NSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTN 553 (812)
Q Consensus 477 ~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 553 (812)
..+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+ ..|+. .+..+...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~-~~~~~~~~~---- 82 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDN-SYKSLIAKL---- 82 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCH-HHHHHHHHH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCCh-HHHHHHHHH----
Confidence 3444555566666666666665554 3345555555666666666666666655544 33322 111111100
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
. +.+.+...+|++.+++.. ..| +...|..+...+...|+.++|...
T Consensus 83 -------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 83 -------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp -------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 0 111112223455555432 355 577888888899999999999999
Q ss_pred HHHHHccCCCC--CchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 632 AKHILAMEPQD--PATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 632 ~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
++++++.+|+. +..+..++.+|...|+.++|...+++.
T Consensus 131 ~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 131 LWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 99999999875 558999999999999999999888765
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.71 E-value=3.3e-08 Score=89.48 Aligned_cols=118 Identities=11% Similarity=-0.039 Sum_probs=100.8
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN 624 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~ 624 (812)
.+.. .|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|++.+++.. +.| +..+|..+...+...|+
T Consensus 6 ~~~~--~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRS--KADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCC--HHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHH--cChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 4445 7899999999988764 3443 5567789999999999999999999865 566 68899999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHH-HHHHH
Q 040319 625 TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELV-REDMR 670 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~ 670 (812)
.+.|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765 46553
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.71 E-value=1e-07 Score=95.58 Aligned_cols=203 Identities=7% Similarity=-0.021 Sum_probs=145.0
Q ss_pred hhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCC--chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC----hhHHHH
Q 040319 438 EIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSS--DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD----IVSWNG 509 (812)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~ 509 (812)
...+-.....+...|+++.|...+..+++..... ....+..+..+|.+.|++++|...|++..+ |+ ...|..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3455556677788999999999999998864221 166788899999999999999999998764 32 356777
Q ss_pred HHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHH
Q 040319 510 LIAGHLL--------HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYA 581 (812)
Q Consensus 510 li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 581 (812)
+..+|.. .|++++|+..|++.++ ..|+..... .+...+...... -...+.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~---------------~a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVD---------------DATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHH---------------HHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHH---------------HHHHHHHHHHHH-----HHHHHH
Confidence 8888888 9999999999999998 567642111 111111111110 012256
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHccCCCCCc--
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIR----------LNTTIGKRVAKHILAMEPQDPA-- 644 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~-- 644 (812)
.+..+|.+.|++++|+..+++.. ..|+ ...+..+..++... |+.++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 67888899999999999988754 3343 34666676777655 8899999999999999999853
Q ss_pred -hHHHHHhhhhhCCCcchH
Q 040319 645 -TYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 645 -~~~~l~~~y~~~g~~~~a 662 (812)
+...+..++...|+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 455566666666555543
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=1.8e-07 Score=82.27 Aligned_cols=128 Identities=14% Similarity=0.204 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLV 584 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 584 (812)
.|..+...|...|++++|+.+|+++.+. .|+ ...+..+...+.. .|++++|..+|+.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~---~---------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYK--QGDYDEAIEYYQKALEL---D---------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHH---C----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHH--hcCHHHHHHHHHHHHHH---C----------
Confidence 4566667777777777777777777663 332 3444444445555 55666666666555431 1
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHH
Q 040319 585 SVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
+.+...|..+...+...|+.+.|...++++++..|+++..+..++.+|...|++++|.+
T Consensus 66 ---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 66 ---------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp ---------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ---------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence 12334455555555555666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 040319 665 VREDMRE 671 (812)
Q Consensus 665 ~~~~m~~ 671 (812)
.++++.+
T Consensus 125 ~~~~~~~ 131 (136)
T 2fo7_A 125 YYQKALE 131 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6665543
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.69 E-value=1.1e-07 Score=83.59 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=83.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-F-QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
.|..++..+.+.|++++|.++++++. . +.+..+|..+...+...|+.+.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 56778888889999999999988864 3 346778888888899999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCC
Q 040319 657 GRWHNSELVREDMREKG 673 (812)
Q Consensus 657 g~~~~a~~~~~~m~~~g 673 (812)
|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999987654
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.68 E-value=4.7e-08 Score=88.10 Aligned_cols=101 Identities=13% Similarity=-0.010 Sum_probs=89.9
Q ss_pred CccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 040319 572 NIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 572 ~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
.+.|+ ...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34554 5677888889999999999999999865 556 68899999999999999999999999999999999999999
Q ss_pred HHhhhhhCCCcchHHHHHHHHHhC
Q 040319 649 VSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 649 l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988653
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=1.5e-07 Score=90.60 Aligned_cols=124 Identities=9% Similarity=-0.009 Sum_probs=94.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHH
Q 040319 510 LIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVL 587 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l 587 (812)
+...|...|++++|+..|++.++ +.|+. ..+..+..++.. .|++++|...|+...+ +.|+ ...|..+..+|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVC--RGQEKDALRMYEKILQ---LEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 88888999999999999999998 67765 566777777878 8999999999998876 4565 67888888888
Q ss_pred hhcCC--hHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 588 GYWGF--LEEAEETINNMPFQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 588 ~~~g~--~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
...|. .+++...++... .|+ ...|..+..++...|+.++|+..+++++++.|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 76654 445566666654 343 334455555667789999999999999999997
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.63 E-value=2.7e-07 Score=106.11 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=150.1
Q ss_pred cCccchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhc
Q 040319 449 GTLGFHEMGKQIHSYAL--------KTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH 517 (812)
Q Consensus 449 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 517 (812)
...|++++|...+..+. +. .+.+...+..+...|.+.|++++|...|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888877 32 244667888889999999999999999998765 5678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHH
Q 040319 518 RQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEE 595 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~ 595 (812)
|++++|++.|++.++ +.|+. ..+..+..++.. .|++++ .+.|++..+ +.|+ ...|..+..+|.+.|++++
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~--~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAEL--AGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHH--HTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH--cCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999 77866 667777778888 999999 999998876 3564 6789999999999999999
Q ss_pred HHHHHHhCC-CCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHccCCCCCchHHH
Q 040319 596 AEETINNMP-FQPK-VSVWRALLDSCRIRLN-----TTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 596 A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
|++.+++.. ..|+ ...|..+..++...++ .+...++.+.+.++.++++.....
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 999999976 7786 5677777777655554 455555666666666665555443
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.62 E-value=9.2e-07 Score=88.50 Aligned_cols=183 Identities=9% Similarity=0.013 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040319 457 GKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSH-----DIVSWNGLIAGHLLHRQGDEALAVWSSME 531 (812)
Q Consensus 457 a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 531 (812)
+...++.....+ .++......+..+|...|++++|++++.+...+ +...+-.++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444433 344445567888888899999999998876332 44566777888999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHhc--CCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 532 KASIKP-----DAITFVLIISAYR--YTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 532 ~~g~~p-----d~~t~~~ll~a~~--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
+ ..| +..+...+..++. ..+.+.+++|..+|+++...+ |+...-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 678 3555566655522 201348999999999987632 442233334447889999999999987643
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 040319 605 F-----------QP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYI 647 (812)
Q Consensus 605 ~-----------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 647 (812)
- .| |+.+...++......|+ .|.+..+++.+..|+++....
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 1 25 45566566666666776 889999999999999876543
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=2.8e-07 Score=103.97 Aligned_cols=158 Identities=12% Similarity=0.037 Sum_probs=121.6
Q ss_pred cCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHH
Q 040319 486 CCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+ ..|+. ..+..+..++.. .|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~--~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWT--QQRHAEAA 77 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence 4678888888887765 4567888899999999999999999999998 66765 667777778888 89999999
Q ss_pred HHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHH
Q 040319 562 KLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR---LNTTIGKRVAKHI 635 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~ 635 (812)
+.|++..+ +.|+ ...|..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |+.++|...++++
T Consensus 78 ~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99998876 3454 6788999999999999999999998864 455 577888899999999 9999999999999
Q ss_pred HccCCCCCchHHHHH
Q 040319 636 LAMEPQDPATYILVS 650 (812)
Q Consensus 636 ~~~~p~~~~~~~~l~ 650 (812)
++.+|++...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999999888887776
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=1e-07 Score=86.00 Aligned_cols=95 Identities=13% Similarity=0.005 Sum_probs=85.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 5667778889999999999999998864 455 78899999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988754
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=1.3e-06 Score=84.14 Aligned_cols=163 Identities=10% Similarity=-0.098 Sum_probs=124.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhhhhcCccCCcc
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLN---LVDSCRKLFLSMKTIYNIEPTSE 578 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g---~~~~a~~~~~~m~~~~~~~p~~~ 578 (812)
-++.++..|...|...+++++|++.|++..+.| +...+..+-..|.. .| +.++|.++|+...+ . -+..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~~A~~-~---g~~~ 86 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR--NPQQADYPQARQLAEKAVE-A---GSKS 86 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS--STTSCCHHHHHHHHHHHHH-T---TCHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHH-C---CCHH
Confidence 456677777777777888888888888887765 44455555555544 22 78888888888765 2 3566
Q ss_pred hHHHHHHHHhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchH
Q 040319 579 HYASLVSVLGY----WGFLEEAEETINNMP-FQPK---VSVWRALLDSCRI----RLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 579 ~y~~li~~l~~----~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
.+..|..+|.. .+++++|++++++.. ..|. +..+..|...+.. .+|.++|...++++.++ |.++.++
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 77778888876 788999999998865 4443 6788888888887 78999999999999998 6678899
Q ss_pred HHHHhhhhhC-C-----CcchHHHHHHHHHhCCC
Q 040319 647 ILVSNLYSSS-G-----RWHNSELVREDMREKGF 674 (812)
Q Consensus 647 ~~l~~~y~~~-g-----~~~~a~~~~~~m~~~g~ 674 (812)
..|+.+|... | ++++|.+.+++..+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999765 3 89999999998866553
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=2e-07 Score=105.16 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=115.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChH
Q 040319 517 HRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~ 594 (812)
.|++++|++.|++..+ ..|+. ..+..+...+.. .|++++|.+.|++..+ +.|+ ...|..+..+|.+.|+++
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELG--MGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHH
Confidence 4789999999999988 67764 667777778888 9999999999999886 3454 778999999999999999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC---CCcchHHHHHHHH
Q 040319 595 EAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS---GRWHNSELVREDM 669 (812)
Q Consensus 595 ~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m 669 (812)
+|.+.+++.. ..| +...|..+...+...|+.++|...++++++++|+++..+..++.+|... |++++|.+.+++.
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999864 455 5789999999999999999999999999999999999999999999999 9999999988877
Q ss_pred HhCC
Q 040319 670 REKG 673 (812)
Q Consensus 670 ~~~g 673 (812)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 5543
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.54 E-value=2.2e-07 Score=81.07 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=71.0
Q ss_pred ccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 573 IEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 573 ~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+.|+ ...+......|.+.|++++|++.|++.. ..| +..+|..+..++...|+.+.|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3344 3456666777777777777777777643 444 566777777777777788888877888877787777777778
Q ss_pred HhhhhhCCCcchHHHHHHHHHh
Q 040319 650 SNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888777777643
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.54 E-value=3.6e-07 Score=79.62 Aligned_cols=107 Identities=9% Similarity=-0.001 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 040319 542 FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDS 618 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 618 (812)
+......+.. .|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.+++.. +.| +...|..+..+
T Consensus 16 ~~~~G~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 16 EKNKGNEYFK--KGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4444444545 5666666666655544 233 25566666666666777777776666643 445 57788889999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 619 CRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 619 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
+...|++++|...++++++++|+++.++..|.+++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999988887764
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.52 E-value=4.9e-07 Score=86.94 Aligned_cols=157 Identities=8% Similarity=0.008 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI-TFVL----------------IISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~----------------ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
+-.....+...|++++|+..|++.++ ..|+.. .+.. +..++.. .|++++|...|+...+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKK--NRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
Confidence 33445567788889999999998888 677653 3444 6667777 8999999999998886
Q ss_pred hcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHccCCCCCc
Q 040319 570 IYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN--TTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 570 ~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~p~~~~ 644 (812)
+.|+ ...|..+..+|...|++++|++.+++.. ..| +..+|..+...+...|+ .+.+...++++....|. ..
T Consensus 83 ---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (208)
T 3urz_A 83 ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QY 158 (208)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HH
T ss_pred ---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hH
Confidence 3464 7889999999999999999999999865 566 57788888888765543 34455566666544332 22
Q ss_pred hHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 645 TYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 645 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+..++..+...|++++|...+++..+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456678888889999999999998743
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.49 E-value=3e-07 Score=94.61 Aligned_cols=59 Identities=3% Similarity=-0.142 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc------hHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA------TYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
++..+...+...|+++.|...+++++++.|++.. .+..++.+|...|++++|.+.+++.
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444455555555555555555554433221 3344444455555555555555444
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.49 E-value=1.5e-06 Score=84.67 Aligned_cols=184 Identities=11% Similarity=-0.006 Sum_probs=132.4
Q ss_pred hHHHHHHHhcCccchHHHHHHHHHHHHhCCCC--chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CCh----hHHHHHH
Q 040319 440 ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSS--DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDI----VSWNGLI 511 (812)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~----~~~~~li 511 (812)
.+-.....+...|+++.|...+..+++..... ....+..+..+|.+.|++++|...|+++.+ |+. ..|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34445567788899999999999999864322 245777889999999999999999998764 432 2455555
Q ss_pred HHHHh------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCc
Q 040319 512 AGHLL------------------HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNI 573 (812)
Q Consensus 512 ~~~~~------------------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~ 573 (812)
..|.. .|+.++|+..|+++++ ..|+......... . .+.+. ..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~---~--l~~~~------~~~~----- 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATK---R--LVFLK------DRLA----- 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHH---H--HHHHH------HHHH-----
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHH---H--HHHHH------HHHH-----
Confidence 55554 5789999999999999 7788643221111 1 11111 1111
Q ss_pred cCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 574 EPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 574 ~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
...-.+...|.+.|++++|+..++++. ..|+ ...+..+..++...|+.+.|...++++....|++...
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 122356788999999999999998865 3444 2467888889999999999999999999999986654
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=8.8e-07 Score=79.09 Aligned_cols=95 Identities=11% Similarity=-0.062 Sum_probs=84.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556677788889999999999998864 455 67889999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998754
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.46 E-value=7.5e-06 Score=83.36 Aligned_cols=160 Identities=6% Similarity=-0.083 Sum_probs=118.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cch
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKAS-IKPDAI----TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEH 579 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~----t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 579 (812)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+.. .|++++|...|+...+...-.++ ...
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK--KVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34667788899999999999988732 122211 22235555656 78999999999988762211222 236
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------Cc
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMP-----F---QPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PA 644 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~-----~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 644 (812)
|+.+..+|...|++++|++.++++. . .|. ..++..+...|...|++++|...+++++++.++. +.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8899999999999999998887754 1 122 3478888889999999999999999999876443 56
Q ss_pred hHHHHHhhhhhCCC-cchHHHHHHHHH
Q 040319 645 TYILVSNLYSSSGR-WHNSELVREDMR 670 (812)
Q Consensus 645 ~~~~l~~~y~~~g~-~~~a~~~~~~m~ 670 (812)
.|..++.+|.+.|+ +++|.+.+++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 78999999999995 599999887763
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.45 E-value=3.4e-07 Score=85.39 Aligned_cols=154 Identities=10% Similarity=0.017 Sum_probs=109.2
Q ss_pred HHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHH-HHhc
Q 040319 441 LTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAG-HLLH 517 (812)
Q Consensus 441 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~-~~~~ 517 (812)
+......+...|+++.|...+..+++.. +.+...+..+...|.+.|++++|...|++... |+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 4455567788899999999999877643 34677889999999999999999999999876 544333322211 2233
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHHHHHhhcCCh
Q 040319 518 RQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLVSVLGYWGFL 593 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~~ 593 (812)
+...+|+..|++.++ ..|+. ..+..+..++.. .|++++|...|+.+.+ ..|+ ...+..+..++...|+.
T Consensus 88 ~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 88 AAESPELKRLEQELA--ANPDNFELACELAVQYNQ--VGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred cccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCC
Confidence 334457888888887 66764 556666667777 8888888888887765 3443 34677777777777777
Q ss_pred HHHHHHHHh
Q 040319 594 EEAEETINN 602 (812)
Q Consensus 594 ~~A~~~~~~ 602 (812)
++|...+++
T Consensus 161 ~~A~~~y~~ 169 (176)
T 2r5s_A 161 NAIASKYRR 169 (176)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 777776654
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.45 E-value=1.3e-06 Score=84.02 Aligned_cols=114 Identities=10% Similarity=0.026 Sum_probs=79.8
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
.|++++|.+.|+... .|+...|..+..+|.+.|++++|++.+++.. ..| +...|..+...+...|+.+.|...
T Consensus 19 ~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp TTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHH
Confidence 566666666665442 3455566666666666666666666666543 233 566777777777788888888888
Q ss_pred HHHHHccCCCCC----------------chHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 632 AKHILAMEPQDP----------------ATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 632 ~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+++++++.|++. ..+..++.+|...|++++|.+.+++..+.
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888777766 77888888888888888888888877543
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.44 E-value=1.5e-05 Score=80.56 Aligned_cols=227 Identities=7% Similarity=-0.069 Sum_probs=156.2
Q ss_pred CChhhHHHHHHHhcccCCCCCChhh-HHHHHHHhcCcc--chHHHHHHHHHHHHhCCCCchhHHHHHHHHh----hhc--
Q 040319 416 GKPEHAILLFHQSQSEATVVPDEIA-LTSVLGVCGTLG--FHEMGKQIHSYALKTGFSSDLGVANSMVSMY----FKC-- 486 (812)
Q Consensus 416 g~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y----~k~-- 486 (812)
...++|+.++.++.. +.|+..| |+.--..+...+ .++++..+.+.++....+ +..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 344678888888877 7777665 444444555566 788888888888775432 334444333333 334
Q ss_pred -CCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCch---
Q 040319 487 -CNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGD--EALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNL--- 556 (812)
Q Consensus 487 -g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~--- 556 (812)
+++++++.+++.+.+ +|..+|+--...+.+.|.++ ++++.++++++ ..|.. ..+..-...... .|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~--l~~~~~ 198 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFS--KKHLAT 198 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHS--SGGGCC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh--ccccch
Confidence 788888888887765 67788888887888888887 99999999998 55644 445444444444 454
Q ss_pred ---HHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCHH
Q 040319 557 ---VDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEE-AEETINNMP-F----QPKVSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 557 ---~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~-A~~~~~~m~-~----~p~~~~~~~ll~~~~~~~~~~ 626 (812)
+++++++++.+.. ..| +...|+.+..++.+.|+..+ +.++.++.. . ..++..+..+...+...|+.+
T Consensus 199 ~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 199 DNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 8888888887775 234 46778888888888887444 555666654 2 236677888888888888888
Q ss_pred HHHHHHHHHHc-cCCCCCchHHHHHhhh
Q 040319 627 IGKRVAKHILA-MEPQDPATYILVSNLY 653 (812)
Q Consensus 627 ~a~~~~~~~~~-~~p~~~~~~~~l~~~y 653 (812)
+|.++++.+.+ .+|-...++...++.+
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 88888888886 7888777776665543
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=1.4e-07 Score=95.53 Aligned_cols=190 Identities=7% Similarity=-0.024 Sum_probs=126.8
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIIS 547 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 547 (812)
+...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|+..+++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 344566677778888888888888876543 3667788888888888888888888888877 56665 55666666
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 626 (812)
++.. .|++++|...|+...+ +.|+ ...+...+....+..+..+... .......++..+...+ ..+ ..|+.+
T Consensus 81 ~~~~--~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLE--MESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHH--TTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHH--cCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 7777 8888888888887765 2232 1112222222222221111111 2222333444444333 333 268899
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHhhhhhC-CCcchHHHHHHHHHh
Q 040319 627 IGKRVAKHILAMEPQDPATYILVSNLYSSS-GRWHNSELVREDMRE 671 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 671 (812)
.|...++++++++|++......+..++.+. +++++|.+++.+..+
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999888888888888887 789999999988755
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=4e-06 Score=85.45 Aligned_cols=163 Identities=6% Similarity=-0.109 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--- 576 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--- 576 (812)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+.. .|++++|...|+...+...-..+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK--KVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 34455667778888888888888888774221111 112333444556 78899999998887642211111
Q ss_pred -cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC-----
Q 040319 577 -SEHYASLVSVLGYWGFLEEAEETINNMP----FQPK-----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ----- 641 (812)
Q Consensus 577 -~~~y~~li~~l~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----- 641 (812)
...|+.+...|...|++++|++.+++.. ..|+ ..++..+...|...|++++|...+++++++.++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 3478889999999999999999887753 1222 257888888999999999999999999987532
Q ss_pred -CCchHHHHHhhhhhCCCcchH-HHHHHHH
Q 040319 642 -DPATYILVSNLYSSSGRWHNS-ELVREDM 669 (812)
Q Consensus 642 -~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 669 (812)
-+..|..++.+|.+.|++++| ...+++.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 156788999999999999999 7766654
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.43 E-value=1.3e-06 Score=89.85 Aligned_cols=219 Identities=9% Similarity=-0.015 Sum_probs=143.7
Q ss_pred cCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHH
Q 040319 415 SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIK 494 (812)
Q Consensus 415 ~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 494 (812)
.|++++|.+++++..+ ..+.. .+...++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k---~~~~~--------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEK---YLKTS--------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHH---HHCCC--------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHH---Hcccc--------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566777777776654 11110 011135566666555443 456777888888887
Q ss_pred HHccCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHhcCCCCchHHHH
Q 040319 495 AFNKMPS-----HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASI---KPD--AITFVLIISAYRYTNLNLVDSC 560 (812)
Q Consensus 495 ~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~~~~~~g~~~~a 560 (812)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...+. .|++++|
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~---~g~~~~A 134 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME---PLDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT---TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---cCCHHHH
Confidence 7765543 11 35788888899999999999999998776211 122 244555555553 3899999
Q ss_pred HHHHHHhhhhcCccC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHH
Q 040319 561 RKLFLSMKTIYNIEP----TSEHYASLVSVLGYWGFLEEAEETINNMP-F---QPK----VSVWRALLDSCRIRLNTTIG 628 (812)
Q Consensus 561 ~~~~~~m~~~~~~~p----~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~~~~~~a 628 (812)
+++|++..+...-.. ....+..+..+|.+.|++++|++.+++.. + .++ ...+..+...+...|+.+.|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 999988765221111 14678889999999999999999998754 1 122 22566666667778999999
Q ss_pred HHHHHHHHccCCCCCch-----HHHHHhhhhhCCCcchHHH
Q 040319 629 KRVAKHILAMEPQDPAT-----YILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 664 (812)
...+++++ ++|+.... ...++..| ..|+.+++.+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 99975543 33445555 5666655554
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=9e-08 Score=99.75 Aligned_cols=161 Identities=9% Similarity=-0.011 Sum_probs=119.9
Q ss_pred hcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHH
Q 040319 485 KCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
..+++++|...|+...+ .+...|..+...|.+.|++++|+..|++.++ +.|+... . .. +++.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~---------~--~~--~~~~ 189 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESS---------F--SN--EEAQ 189 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCC---------C--CS--HHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--Hhhcccc---------C--Ch--HHHH
Confidence 34556666666655443 2456788888889999999999999999888 4554311 0 11 1111
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
+.- . -....|..+..+|.+.|++++|++.+++.. +.| +...|..+..++...|+++.|...++++++++
T Consensus 190 ~~~-~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 190 KAQ-A--------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHH-H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHH-H--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 100 0 113567788888888889998888888754 455 67889999999999999999999999999999
Q ss_pred CCCCchHHHHHhhhhhCCCcchH-HHHHHHH
Q 040319 640 PQDPATYILVSNLYSSSGRWHNS-ELVREDM 669 (812)
Q Consensus 640 p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 669 (812)
|+++.++..++.+|...|++++| ...++.|
T Consensus 261 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 261 PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 4455555
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.38 E-value=9e-05 Score=81.06 Aligned_cols=199 Identities=11% Similarity=0.071 Sum_probs=119.3
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHH
Q 040319 298 NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLD 377 (812)
Q Consensus 298 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 377 (812)
+...|-..+.-+.+.|+.++|..+|++.... |....+... ++.....+ ++++.+..
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~---~~~~~l~~--------------- 267 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEE---AVYGDLKR--------------- 267 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCT---HHHHHHHH---------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchh---HHHHHHHH---------------
Confidence 3556777777778888899999999888887 554433322 11111111 11111111
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHH--HHHHHhcCccchH
Q 040319 378 MLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALT--SVLGVCGTLGFHE 455 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~--~ll~a~~~~~~~~ 455 (812)
.|.... .+.+ .....++....|...+....+.+..+.|..+|.+... .+ ++...|. +.+.... .++.+
T Consensus 268 ~~~~~~-~~~~-----~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~-~~--~~~~v~i~~A~lE~~~-~~d~~ 337 (493)
T 2uy1_A 268 KYSMGE-AESA-----EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGN-EG--VGPHVFIYCAFIEYYA-TGSRA 337 (493)
T ss_dssp HTC----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT-SC--CCHHHHHHHHHHHHHH-HCCSH
T ss_pred HHHhhc-cchh-----hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhC-CC--CChHHHHHHHHHHHHH-CCChH
Confidence 110000 0000 0000011134566667666667778888888887722 22 2222232 1121111 22588
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 456 MGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 456 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
.|+.+++..++.. +.++..+...++...+.|+.+.|+.+|+.+. .....|...+.--..+|+.+.+.++++++..
T Consensus 338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999888754 3345566778888889999999999999984 4677888888887888999999998888875
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.37 E-value=7.2e-06 Score=82.92 Aligned_cols=211 Identities=10% Similarity=0.089 Sum_probs=163.2
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcC--CHHHHHHHHccCCC---CChhHHHHHHHHH----Hhc---CCh
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCC--NMSNAIKAFNKMPS---HDIVSWNGLIAGH----LLH---RQG 520 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~~~~---~~~~~~~~li~~~----~~~---g~~ 520 (812)
..++|..+.+.++..+ +.+..+|+.--..+...| ++++++..++.+.. .+...|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888888888755 234556777777777778 99999999998765 5667888765555 555 789
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHH--HHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCC----
Q 040319 521 DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVD--SCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGF---- 592 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~---- 592 (812)
++++++++++.+ ..|.. ..+..-.-...+ .|.++ ++.++++.+.+. .| +-..|+.-..++.+.|+
T Consensus 127 ~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~--l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 127 YREFDILEAMLS--SDPKNHHVWSYRKWLVDT--FDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--hcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 999999999999 66755 555555445555 66666 999999999872 34 45567766777777776
Q ss_pred --hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHccC---CCCCchHHHHHhhhhhCCCcchHHH
Q 040319 593 --LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN-TTIGKRVAKHILAME---PQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 593 --~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
++++++.++++. ..| |...|+-+...+...|+ .+.....++++++++ |.++.++..++++|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 899999998865 556 78999999988888876 444666888888876 8888999999999999999999999
Q ss_pred HHHHHHh
Q 040319 665 VREDMRE 671 (812)
Q Consensus 665 ~~~~m~~ 671 (812)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999865
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.34 E-value=4e-06 Score=80.62 Aligned_cols=144 Identities=8% Similarity=-0.054 Sum_probs=104.5
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCC
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNL 554 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 554 (812)
+..+...|.+.|++++|...|++...|+...|..+...|...|++++|++.|++..+ ..|+. ..+..+..++.. .
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~--~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQ--T 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHH--c
Confidence 445667788889999999999988888888888899999999999999999998888 45554 566666677777 8
Q ss_pred chHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 040319 555 NLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPK-VSVWRALLDSCRIRLNTTIGKRVAK 633 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 633 (812)
|++++|.+.|+...+. .|+..... +...| +...|+ ..+|..+..++...|+.+.|...++
T Consensus 85 ~~~~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp TCHHHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888877652 22211000 00000 112332 4577778888888999999999999
Q ss_pred HHHccCCCC
Q 040319 634 HILAMEPQD 642 (812)
Q Consensus 634 ~~~~~~p~~ 642 (812)
+++++.|++
T Consensus 146 ~al~~~p~~ 154 (213)
T 1hh8_A 146 LATSMKSEP 154 (213)
T ss_dssp HHHTTCCSG
T ss_pred HHHHcCccc
Confidence 999999875
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.31 E-value=6.6e-06 Score=71.91 Aligned_cols=119 Identities=8% Similarity=-0.072 Sum_probs=86.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchH
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHY 580 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 580 (812)
.+...|..+...+...|++++|+..|++..+ ..|+ ...+..+...+.. .|++++|.++|+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~---------- 79 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTK--LLEFQLALKDCEECIQL---------- 79 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTT--TTCHHHHHHHHHHHHHH----------
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHHh----------
Confidence 3456677777778888888888888888777 4453 3455555555555 66666666666655541
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
.+.+..+|..+...+...|+.+.|...++++++++|++...+..++.+|...|+
T Consensus 80 ------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ------------------------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ------------------------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 122456777777888888999999999999999999999999999998887764
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=3.4e-06 Score=71.13 Aligned_cols=98 Identities=8% Similarity=0.030 Sum_probs=86.1
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchHHHHHh
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ--DPATYILVSN 651 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 651 (812)
+...|..+...+.+.|++++|...+++.. ..| +..+|..+...+...|+.+.|...+++++++.|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 35677788888999999999999988854 334 6778888999999999999999999999999999 9999999999
Q ss_pred hhhhC-CCcchHHHHHHHHHhCC
Q 040319 652 LYSSS-GRWHNSELVREDMREKG 673 (812)
Q Consensus 652 ~y~~~-g~~~~a~~~~~~m~~~g 673 (812)
+|... |++++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999986543
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=2.6e-06 Score=79.25 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=87.9
Q ss_pred CchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCH--HH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDS-CRIRLNT--TI 627 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~-~~~~~~~--~~ 627 (812)
.|++++|...|+...+. .| +...|..+..+|...|++++|.+.+++.. ..| +...|..+... +...|+. +.
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 66777777777766552 23 45677778888888888888888887754 334 56677777777 7778887 99
Q ss_pred HHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 628 GKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 628 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
|...++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999999999999998889999999999999999999988887654
No 128
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.28 E-value=9.9e-06 Score=82.11 Aligned_cols=150 Identities=7% Similarity=-0.035 Sum_probs=73.0
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHH-HHHHHHhcCCh
Q 040319 444 VLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNG-LIAGHLLHRQG 520 (812)
Q Consensus 444 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~ 520 (812)
+...+...|+++.|...++.+.+.. +.+...+..|...|.+.|++++|...|+++.. |+...+.. ....+...++.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence 3344445555555555555555433 22344555555666666666666666665544 33322221 11224445555
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHHHHHhhcCChHHH
Q 040319 521 DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~~~~A 596 (812)
++|+..|++..+ ..|+. ..+..+..++.. .|++++|...|..+.+. .|+ ...+..++.+|...|+.++|
T Consensus 202 ~~a~~~l~~al~--~~P~~~~~~~~la~~l~~--~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 202 TPEIQQLQQQVA--ENPEDAALATQLALQLHQ--VGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp CHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred CccHHHHHHHHh--cCCccHHHHHHHHHHHHH--cccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcH
Confidence 555555555555 34443 334444444445 55555555555555442 222 33444555555555555544
Q ss_pred HHHHH
Q 040319 597 EETIN 601 (812)
Q Consensus 597 ~~~~~ 601 (812)
...++
T Consensus 275 ~~~~r 279 (287)
T 3qou_A 275 ASXYR 279 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.28 E-value=4.1e-06 Score=72.89 Aligned_cols=84 Identities=7% Similarity=-0.034 Sum_probs=62.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...|..+..++...|++++|.+.+++.. ..| +...|..+...+...|+.+.|...+++++++.|+++..+..++.+|.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3444555555555566666665555533 233 46678888888889999999999999999999999999999999999
Q ss_pred hCCCcc
Q 040319 655 SSGRWH 660 (812)
Q Consensus 655 ~~g~~~ 660 (812)
..|+++
T Consensus 126 ~~~~~~ 131 (131)
T 2vyi_A 126 KLREAP 131 (131)
T ss_dssp HHTTCC
T ss_pred HHhcCC
Confidence 888764
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=3.1e-06 Score=73.57 Aligned_cols=95 Identities=8% Similarity=-0.043 Sum_probs=83.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...|..+...+.+.|++++|++.+++.. ..| +...|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456677788889999999999988854 445 67889999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999999988754
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.28 E-value=0.00021 Score=78.08 Aligned_cols=201 Identities=9% Similarity=-0.018 Sum_probs=116.7
Q ss_pred hHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHH-HHHHcc
Q 040319 420 HAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNA-IKAFNK 498 (812)
Q Consensus 420 ~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~ 498 (812)
.+..+|+++.. . .+-+...|...+.-+...|+.+.|..+++.+++. +.+...+.. |+...+.++. ..+.+.
T Consensus 197 Rv~~~ye~al~-~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 197 RMHFIHNYILD-S-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHH-H-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34566666654 1 2223344555555556667777777777777776 333333322 2221111111 111111
Q ss_pred CC----------C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHhcCCCCchHHHHHHHH
Q 040319 499 MP----------S--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFV--LIISAYRYTNLNLVDSCRKLF 564 (812)
Q Consensus 499 ~~----------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~g~~~~a~~~~ 564 (812)
.. . .....|-..+..+.+++..+.|.++|++. +. -.++...|. +.+... . .++.+.|..+|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~-~--~~d~~~ar~if 343 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY-A--TGSRATPYNIF 343 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH-H--HCCSHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH-H--CCChHHHHHHH
Confidence 10 0 11245666777776777888888888888 31 112223332 222221 1 23588888888
Q ss_pred HHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 565 LSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 565 ~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
+...+.++- ++..|...++...+.|+.+.|..++++.. .....|...+.--..+|+.+.+..++++.++
T Consensus 344 e~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888764422 24456677888888888888888888873 3567788888877788888888777777653
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.28 E-value=4.7e-06 Score=71.76 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=56.4
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-F-QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
..+..++.++.+.|++++|...++++. . +.+..+|..+...+...|+.+.|...+++++++.|+++..+..++.++..
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 344445555555555555555555533 2 23566777888888888899999999999999999888888888888765
Q ss_pred CC
Q 040319 656 SG 657 (812)
Q Consensus 656 ~g 657 (812)
.|
T Consensus 124 ~g 125 (125)
T 1na0_A 124 QG 125 (125)
T ss_dssp HC
T ss_pred cc
Confidence 54
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.27 E-value=4.4e-06 Score=76.46 Aligned_cols=94 Identities=10% Similarity=-0.038 Sum_probs=67.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH--Hhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV--SNL 652 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~ 652 (812)
...|..+..++...|++++|++.+++.. ..| +..+|..+...+...|+.+.|...+++++++.|+++..+..+ +..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444555555555566666655555532 233 566788888888889999999999999999999988877444 444
Q ss_pred hhhCCCcchHHHHHHHHH
Q 040319 653 YSSSGRWHNSELVREDMR 670 (812)
Q Consensus 653 y~~~g~~~~a~~~~~~m~ 670 (812)
+.+.|++++|.+.+....
T Consensus 127 ~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 127 IVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccchH
Confidence 888899999998887664
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.26 E-value=1.6e-06 Score=74.83 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=85.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|+..++++++++|+++.++..++.+|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3456677888999999999999999865 556 68889989899999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998754
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=1e-06 Score=83.81 Aligned_cols=169 Identities=7% Similarity=-0.095 Sum_probs=108.6
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCc
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLN 555 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g 555 (812)
.+......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.++ +.|+...+. .+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~----------~~ 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWD----------DQ 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCC----------CH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccc----------hh
Confidence 34445556677777766654433 2445677888888899999999999999988 444421110 00
Q ss_pred hHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040319 556 LVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAK 633 (812)
Q Consensus 556 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 633 (812)
....-.. . .....|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|...++
T Consensus 78 ~~~~~~~---~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKKK---N--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHHH---H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHH---H--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0000000 0 013456777788888888888888887754 344 67788888899999999999999999
Q ss_pred HHHccCCCCCchHHHHHhhhhhCCCcchHH-HHHHHHH
Q 040319 634 HILAMEPQDPATYILVSNLYSSSGRWHNSE-LVREDMR 670 (812)
Q Consensus 634 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~ 670 (812)
++++++|+++.++..++.++...|+.+++. ..++.|-
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998888777 4455553
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=1.3e-06 Score=78.64 Aligned_cols=110 Identities=8% Similarity=-0.026 Sum_probs=73.4
Q ss_pred CCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHH
Q 040319 535 IKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVS 610 (812)
Q Consensus 535 ~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~ 610 (812)
+.|+. ..+..+...+.. .|++++|...|+.... +.| +...|..+..+|.+.|++++|++.+++.. ..| +..
T Consensus 16 ~~p~~~~~~~~~g~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQ--SGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp CCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred CCHhhHHHHHHHHHHHHH--cCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 44443 233334444555 6666666666666554 233 35566666667777777777777776643 344 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
.|..+..++...|+.+.|+..+++++++.|+++......
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 788888888899999999999999999999877664433
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.22 E-value=3e-06 Score=76.20 Aligned_cols=86 Identities=5% Similarity=-0.065 Sum_probs=51.2
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|...|+...+ +.|+ ...|..+..+|.+.|++++|++.|++.. +.| ++..|..+..++...|+.++|..
T Consensus 49 ~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444443 2232 4445555555555555555555555533 344 45667777777777788888888
Q ss_pred HHHHHHccCCCC
Q 040319 631 VAKHILAMEPQD 642 (812)
Q Consensus 631 ~~~~~~~~~p~~ 642 (812)
.+++++++.|++
T Consensus 126 ~~~~al~l~~~~ 137 (151)
T 3gyz_A 126 CFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHCCCH
T ss_pred HHHHHHHhCCCH
Confidence 888888887763
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=6.5e-06 Score=72.61 Aligned_cols=98 Identities=7% Similarity=-0.050 Sum_probs=86.1
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhh
Q 040319 575 PTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNL 652 (812)
Q Consensus 575 p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 652 (812)
.+...|..+...+...|++++|+..+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 346778888889999999999999988854 445 578888899999999999999999999999999999999999999
Q ss_pred hhhCCCcchHHHHHHHHHhC
Q 040319 653 YSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 653 y~~~g~~~~a~~~~~~m~~~ 672 (812)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999887543
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.19 E-value=8.5e-07 Score=87.56 Aligned_cols=181 Identities=8% Similarity=-0.062 Sum_probs=122.5
Q ss_pred hcCCHHHHHHHHccCCC---CChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 040319 485 KCCNMSNAIKAFNKMPS---HDIVSWNGL-------IAGHLLHRQGDEALAVWSSMEKASIKPDAI-------------- 540 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------------- 540 (812)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46778888888877654 334677777 4555555666666666555544 444321
Q ss_pred --------HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCH---
Q 040319 541 --------TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKV--- 609 (812)
Q Consensus 541 --------t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~--- 609 (812)
....+..++.. .|++++|.+.|+.+.. ..|+....-.+..++.+.|++++|+..++.....|+.
T Consensus 96 ~~v~~r~dl~LayA~~L~~--~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAA--QGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp EECSSHHHHHHHHHHHHHH--HTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cccCCHhHHHHHHHHHHHH--CCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 11112334445 7888888888887764 2354335666667888888899998888865533332
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CC-CCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 610 -SVWRALLDSCRIRLNTTIGKRVAKHILAME--PQ-DPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 610 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
.++..+..++...|+.++|+..++++..-. |. .+.....++.++.+.|+.++|..+++++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 366677778888899999999888887543 44 4457788888899999999999988888653
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.18 E-value=8.1e-05 Score=75.59 Aligned_cols=158 Identities=11% Similarity=-0.082 Sum_probs=119.4
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC-----CCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS-----HDI----VSWNGLIAGHLLHRQGDEALAVWSSMEKASIK-PD----AITFVL 544 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ 544 (812)
.+..+.+.|++++|..++++..+ ++. ..+..+...|...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778899999999999987554 221 13334666777788999999999999984322 23 135788
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhc----CccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-HHH
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIY----NIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-------FQPK-VSV 611 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-------~~p~-~~~ 611 (812)
+..+|.. .|++++|..+|+.+.+.. +..|. ...|..+..+|.+.|++++|++.+++.. ..+. ..+
T Consensus 161 lg~~y~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 161 IANIYAE--NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 8888888 999999999999887422 11222 3478899999999999999999988743 1222 668
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHcc
Q 040319 612 WRALLDSCRIRL-NTTIGKRVAKHILAM 638 (812)
Q Consensus 612 ~~~ll~~~~~~~-~~~~a~~~~~~~~~~ 638 (812)
|..+..++...| +.++|...+++++++
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888888999999 579999999998865
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.17 E-value=2.9e-06 Score=83.76 Aligned_cols=138 Identities=9% Similarity=0.039 Sum_probs=94.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC--cchHHHHHHH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--SEHYASLVSV 586 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~ 586 (812)
.....+...|++++|.++|+.+.. ..|+......+...+.+ .|++++|+..|+...+ .. .|. ...+..+..+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~--~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGA--AERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHH--TTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHH--cCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 345566677777777777777766 34655433333334555 7788888888865443 10 111 2356777888
Q ss_pred HhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 587 LGYWGFLEEAEETINNMP---FQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 587 l~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
+.+.|++++|++.+++.. ..|. ...+..+..+++..|+.++|...++++++.+|+ +.+...|.+.-
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 888888888888888753 2243 336677777889999999999999999999998 77777765543
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=4.7e-06 Score=76.41 Aligned_cols=95 Identities=8% Similarity=-0.041 Sum_probs=77.0
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...|..+...+.+.|++++|++.+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4566777778888888888888887754 445 67788888888888888888888888888888888888888888888
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888888887754
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.17 E-value=7.8e-06 Score=69.52 Aligned_cols=95 Identities=7% Similarity=0.017 Sum_probs=72.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...+..++..+...|++++|.+.+++.. ..| +...|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3456667777777888888888777754 334 56677777777888888888888888888888888888888888888
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888888877654
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.16 E-value=1.9e-05 Score=75.01 Aligned_cols=155 Identities=13% Similarity=0.042 Sum_probs=80.6
Q ss_pred hcCCHHHHHH---HHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcCCCCch
Q 040319 485 KCCNMSNAIK---AFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKPDA-ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 485 k~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~g~ 556 (812)
..|++++|.+ .+..-+......|+.+...|...|++++|+..|++..+. |..|.. .++..+...+.. .|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM--AGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--TTC
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--cCC
Confidence 4566777776 554433334566677777777777777777777776551 111111 333444444444 555
Q ss_pred HHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040319 557 VDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQP--KVSVWRALLDSCRIRLNTTIGKRVAKH 634 (812)
Q Consensus 557 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 634 (812)
+++|.+++++..+...-.+ ..| ...++..+...+...|+++.|...+++
T Consensus 82 ~~~A~~~~~~al~~~~~~~-----------------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLP-----------------------------EDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSC-----------------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-----------------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5555555554433110011 011 122344445555556666666666666
Q ss_pred HHccCCC--C----CchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 635 ILAMEPQ--D----PATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 635 ~~~~~p~--~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
++++.+. + ...+..++.+|...|++++|.+.+++..
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6544221 1 1224667777777777777777766553
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.15 E-value=7.6e-06 Score=76.04 Aligned_cols=126 Identities=11% Similarity=0.136 Sum_probs=90.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHH-HhhcCC
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSV-LGYWGF 592 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~-l~~~g~ 592 (812)
..|++++|+..|++..+ ..|+. ..+..+...+.. .|++++|..+|+...+ +.| +...+..+..+ +...|+
T Consensus 22 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLW--QNDYSNSLLAYRQALQ---LRGENAELYAALATVLYYQASQ 94 (177)
T ss_dssp -----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHTTT
T ss_pred hccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhcCC
Confidence 45677777777777776 44543 556666666666 7888888888877765 233 45667777777 667888
Q ss_pred h--HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 040319 593 L--EEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 593 ~--~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
+ ++|...+++.. ..| +...|..+...+...|+.+.|...++++++++|+++.....
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 7 88888888754 445 57788888888999999999999999999999998765443
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.15 E-value=3.7e-06 Score=73.26 Aligned_cols=94 Identities=6% Similarity=-0.053 Sum_probs=80.5
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc-------hHHH
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA-------TYIL 648 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 648 (812)
..+..+...+.+.|++++|++.|++.. +.| +..+|..+..++...|+++.|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 346678888999999999999998854 556 5788999999999999999999999999999988754 5777
Q ss_pred HHhhhhhCCCcchHHHHHHHHHh
Q 040319 649 VSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 649 l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
++++|...|++++|.+.+++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999987643
No 147
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.14 E-value=3.3e-05 Score=74.21 Aligned_cols=171 Identities=8% Similarity=-0.024 Sum_probs=108.8
Q ss_pred HHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCcc----chHHHHHHHHH
Q 040319 388 AEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLG----FHEMGKQIHSY 463 (812)
Q Consensus 388 A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~----~~~~a~~~~~~ 463 (812)
|.+.|++.. +..+..++..+...|...+++++|++.|++..+ .| +...+..+-..+.. + +.++|...+..
T Consensus 5 A~~~~~~aa-~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQA-EAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAA-QG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 334444333 223355666666666666666777766666655 33 23334444444444 4 67777777777
Q ss_pred HHHhCCCCchhHHHHHHHHhhh----cCCHHHHHHHHccCCCC-C----hhHHHHHHHHHHh----cCChHHHHHHHHHH
Q 040319 464 ALKTGFSSDLGVANSMVSMYFK----CCNMSNAIKAFNKMPSH-D----IVSWNGLIAGHLL----HRQGDEALAVWSSM 530 (812)
Q Consensus 464 ~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~~-~----~~~~~~li~~~~~----~g~~~~A~~l~~~m 530 (812)
..+.| ++..+..|..+|.. .+++++|...|++..+. + +.++..|...|.. .++.++|+..|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 76654 55666777777776 78888888888877662 2 5788888888887 77888899998888
Q ss_pred HHCCCCCCHHHHHHHHHHhcCCC----CchHHHHHHHHHHhhh
Q 040319 531 EKASIKPDAITFVLIISAYRYTN----LNLVDSCRKLFLSMKT 569 (812)
Q Consensus 531 ~~~g~~pd~~t~~~ll~a~~~~~----~g~~~~a~~~~~~m~~ 569 (812)
.+. .++...+..|-..|.... ..+.++|..+|+...+
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 885 233345555555553310 2278888888887765
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.14 E-value=9.1e-06 Score=69.89 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=85.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...|..+...+.+.|++++|.+.++++. ..| +..+|..+...+...|+.+.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4667788888999999999999988865 334 67889999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhC
Q 040319 655 SSGRWHNSELVREDMREK 672 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~~ 672 (812)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988653
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.12 E-value=3.2e-05 Score=78.60 Aligned_cols=162 Identities=9% Similarity=-0.097 Sum_probs=117.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHccCCC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HH
Q 040319 475 VANSMVSMYFKCCNMSNAIKAFNKMPS--H-DI------VSWNGLIAGHLLHRQGDEALAVWSSMEKASI---KPD--AI 540 (812)
Q Consensus 475 ~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~ 540 (812)
.+...+..|...|++++|...+.+..+ + .. ..+..+...|...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567778899999999888864332 1 11 2234456667788899999999999886321 122 24
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-----cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC------
Q 040319 541 TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-----SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK------ 608 (812)
Q Consensus 541 t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~------ 608 (812)
++..+...|.. .|++++|..+|+...+.....|+ ...|..+..+|.+.|++++|++.+++.. +.++
T Consensus 157 ~~~~lg~~y~~--~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 157 IENAIANIYAE--NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 67778888888 99999999999988732222233 2588899999999999999999988743 1111
Q ss_pred -HHHHHHHHHHHHhcCCHHHH-HHHHHHHHcc
Q 040319 609 -VSVWRALLDSCRIRLNTTIG-KRVAKHILAM 638 (812)
Q Consensus 609 -~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 638 (812)
..+|..+...+...|+.+.| ...+++++++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888889999999999 7778887764
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.08 E-value=1e-05 Score=70.67 Aligned_cols=96 Identities=8% Similarity=-0.002 Sum_probs=86.6
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
+...|..+...+.+.|++++|.+.+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 36678888999999999999999998854 455 6788988999999999999999999999999999999999999999
Q ss_pred hhCCCcchHHHHHHHHHh
Q 040319 654 SSSGRWHNSELVREDMRE 671 (812)
Q Consensus 654 ~~~g~~~~a~~~~~~m~~ 671 (812)
...|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998754
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=3.5e-05 Score=68.66 Aligned_cols=119 Identities=8% Similarity=-0.053 Sum_probs=71.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHH
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYA 581 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 581 (812)
.+...|..+...+...|++++|++.|++..+ ..|+... ....|.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~----------------------------------~~~~~~ 69 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD----------------------------------QAVLHR 69 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH----------------------------------HHHHHH
Confidence 3445666666666666666666666666666 4455200 022233
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
.+..+|...|++++|++.+++.. ..| +...|..+..++...|+.+.|...++++++++|+++..+..+..+..+.
T Consensus 70 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 70 NRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 33334444444444444444322 233 4566777777788888888888888888888888877777776665443
No 152
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=1.1e-05 Score=70.17 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHHh
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMP-FQPK-V---SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILVSN 651 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 651 (812)
+..+...+.+.|++++|.+.+++.. ..|+ . ..|..+..++...|+.+.|...++++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445667778888888888887754 3343 2 467777778888999999999999999999988 677889999
Q ss_pred hhhhCCCcchHHHHHHHHHh
Q 040319 652 LYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 652 ~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|...|++++|.+.+++..+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999888754
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.06 E-value=4e-06 Score=74.75 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=61.1
Q ss_pred CchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|...|+.... ..| +...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|..
T Consensus 31 ~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 4555555555555443 123 24445555556666666666666665543 334 45677777788888899999999
Q ss_pred HHHHHHccCCCCCchHHHHHh
Q 040319 631 VAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~ 651 (812)
.+++++++.|+++........
T Consensus 108 ~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 108 GFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHhCCCCcchHHHHHH
Confidence 999999999988776655443
No 154
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=1.4e-05 Score=73.03 Aligned_cols=93 Identities=6% Similarity=-0.048 Sum_probs=74.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-C------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-F------------------QP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAM 638 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~------------------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 638 (812)
.+......+.+.|++++|++.|++.. . .| +..+|..+..++...|+++.|...+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34455566666666666666665532 1 23 2457888888899999999999999999999
Q ss_pred CCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 639 EPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 639 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|+++.+|..++.+|...|++++|...+++..+
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 999999999999999999999999999988754
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.03 E-value=3.3e-05 Score=65.52 Aligned_cols=77 Identities=14% Similarity=0.029 Sum_probs=53.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
...+..+..++.+.|++++|.+.+++.. ..| +...|..+..++...|+.+.|...++++++++|+++..+..++.+.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 3444445555555556666655555532 233 5667778888888889999999999999999998887777776654
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.03 E-value=1.2e-05 Score=69.70 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=86.0
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
+...+..+...+...|++++|.+.+++.. ..| +..+|..+...+...|+.+.|...+++++++.|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35667778888999999999999998854 344 6788888999999999999999999999999999999999999999
Q ss_pred hhCCCcchHHHHHHHHHhC
Q 040319 654 SSSGRWHNSELVREDMREK 672 (812)
Q Consensus 654 ~~~g~~~~a~~~~~~m~~~ 672 (812)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999987653
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.00019 Score=73.03 Aligned_cols=223 Identities=13% Similarity=0.060 Sum_probs=136.2
Q ss_pred hhHHHHHHHhcccCCCCCChhh-HHH---HHHHhcCc-------cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcC
Q 040319 419 EHAILLFHQSQSEATVVPDEIA-LTS---VLGVCGTL-------GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCC 487 (812)
Q Consensus 419 ~~A~~~~~~m~~~~g~~p~~~t-~~~---ll~a~~~~-------~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g 487 (812)
++|+.++..+.. +.|+..| |+. ++...... ..++.+..+.+.++... +-+..+|+.-.-.+.+.|
T Consensus 47 ~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 47 ESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 366777777665 5565544 221 12211110 11456666677766644 335566666555566666
Q ss_pred --CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCC--------
Q 040319 488 --NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ-GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYT-------- 552 (812)
Q Consensus 488 --~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~-------- 552 (812)
.++++..+++.+.+ +|..+|+--...+...|. .+++++.++++++ ..|+. ..|+.....+...
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 47888888887765 677888877777777787 5888899998888 55654 3343332222220
Q ss_pred ----CCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhc-----------CChHHHHHHHHhCC-CCCCHHHHHHH
Q 040319 553 ----NLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYW-----------GFLEEAEETINNMP-FQPKVSVWRAL 615 (812)
Q Consensus 553 ----~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~-----------g~~~~A~~~~~~m~-~~p~~~~~~~l 615 (812)
..+.++++.+++..... +.|+ ...|+-+-.++.+. +.++++++.++++. ..||. .|.-+
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~ 276 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLL 276 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred ccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHH
Confidence 01567788888887765 3454 55666555555555 45778888887765 66764 34322
Q ss_pred HHHH-----HhcCCHHHHHHHHHHHHccCCCCCchHHHHHh
Q 040319 616 LDSC-----RIRLNTTIGKRVAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 616 l~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 651 (812)
-.+. ...+..+.....+.++.++||...+.|..+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 2221 13466777778888888888877777766544
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1.9e-05 Score=70.49 Aligned_cols=96 Identities=11% Similarity=-0.020 Sum_probs=86.4
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
+...+..+...+.+.|++++|.+.+++.. ..|+ ..+|..+...+...|+++.|...++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 46678888889999999999999998854 6676 678888888999999999999999999999999999999999
Q ss_pred hhhhhCCCcchHHHHHHHHHh
Q 040319 651 NLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 651 ~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998754
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=2.3e-06 Score=93.11 Aligned_cols=161 Identities=7% Similarity=-0.020 Sum_probs=114.7
Q ss_pred hcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHH
Q 040319 485 KCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
..+++++|...|+...+ .+...|..+...|.+.|++++|+..|++.++ +.|+... . .+ ++..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~---------~--~~--~~~~ 310 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYG---------L--SE--KESK 310 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCS---------C--CH--HHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--Hhccccc---------C--Ch--HHHH
Confidence 34455566666654433 2345788888888899999999999998887 4444311 0 00 0100
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
+ ... -....|..+..+|.+.|++++|+..+++.. +.| +...|..+..++...|+++.|...++++++++
T Consensus 311 ~----~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 311 A----SES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp H----HHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred H----HHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 0 000 114567788888889999999999888854 445 67889999999999999999999999999999
Q ss_pred CCCCchHHHHHhhhhhCCCcchHHH-HHHHH
Q 040319 640 PQDPATYILVSNLYSSSGRWHNSEL-VREDM 669 (812)
Q Consensus 640 p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m 669 (812)
|++..++..++.++...|++++|.+ .+++|
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875 34444
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.99 E-value=6.5e-05 Score=71.20 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=77.4
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKP- 537 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p- 537 (812)
...++..+...|...|++++|...|++... ....+++.+...|...|++++|++.+++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 455666677777777777777777665432 22356777888888899999999888887662 1122
Q ss_pred C-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 538 D-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 538 d-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
. ...+..+...+.. .|++++|..++++..+...-.++ ...+..+..++.+.|++++|.+.+++
T Consensus 105 ~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 105 AASANAYEVATVALH--FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 1 1334555556666 77788887777766531110111 12234555555555555555555543
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.97 E-value=1.3e-05 Score=71.24 Aligned_cols=91 Identities=11% Similarity=-0.053 Sum_probs=69.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc-------C
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQPK-------------VSVWRALLDSCRIRLNTTIGKRVAKHILAM-------E 639 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~ 639 (812)
......+...|++++|++.|++.. +.|+ ...|..+..++...|++++|...+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344455556666666666666532 2332 338888888888889999999999999988 9
Q ss_pred CCCCchH----HHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 640 PQDPATY----ILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 640 p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
|+++..| ..++.+|...|++++|...+++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998888 9999999999999999999888744
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=1.3e-05 Score=87.54 Aligned_cols=111 Identities=8% Similarity=-0.006 Sum_probs=87.5
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|.+.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++.. ..| +..+|..+..++...|+.++|+.
T Consensus 19 ~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 19 AKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6777777777777765 2443 6677788888888888888888887754 555 57788888889999999999999
Q ss_pred HHHHHHccCCCCCchHHHHHhh--hhhCCCcchHHHHHH
Q 040319 631 VAKHILAMEPQDPATYILVSNL--YSSSGRWHNSELVRE 667 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 667 (812)
.++++++++|+++..+..++.+ |.+.|++++|.+..+
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999888 888899999999877
No 163
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.95 E-value=2.8e-05 Score=70.93 Aligned_cols=125 Identities=10% Similarity=-0.018 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASL 583 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l 583 (812)
.|..+...+...|++++|+..|++..+ ..|+ ...+..+...+.. .|++++|...|+...+. .| +...|..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~a~~~---~~~~~~~~~~~ 87 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLR--TECYGYALGDATRAIEL---DKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 444555555556666666666666555 3343 3444444445555 56666666666655541 23 34556666
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHc
Q 040319 584 VSVLGYWGFLEEAEETINNMP-FQP-KVSVWRA--LLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
..++.+.|++++|.+.+++.. ..| +...+.. +...+...|++++|...+++..+
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 666666666666666666543 233 3334422 22235556777777777666554
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.93 E-value=1.4e-05 Score=87.33 Aligned_cols=115 Identities=12% Similarity=0.072 Sum_probs=69.7
Q ss_pred HHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCc
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLN 555 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g 555 (812)
...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|++.+++.++ +.|+. .++..+..++.. .|
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~--~g 88 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA--LG 88 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH--HT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cC
Confidence 4456677777777777766543 3456777777777777777777777777777 45554 455555566666 77
Q ss_pred hHHHHHHHHHHhhhhcCccCC-cchHHHHHHH--HhhcCChHHHHHHHH
Q 040319 556 LVDSCRKLFLSMKTIYNIEPT-SEHYASLVSV--LGYWGFLEEAEETIN 601 (812)
Q Consensus 556 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~--l~~~g~~~~A~~~~~ 601 (812)
++++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777766652 332 3344444444 556666666666665
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.93 E-value=4.6e-05 Score=69.65 Aligned_cols=75 Identities=12% Similarity=-0.007 Sum_probs=53.9
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 651 (812)
...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|+++.|...++++++++|+++..+...+.
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445555555555566666665555533 344 57788888888999999999999999999999999886655543
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.93 E-value=0.00083 Score=68.56 Aligned_cols=169 Identities=11% Similarity=0.001 Sum_probs=87.3
Q ss_pred HHcCChhhHHHHHHHhcccCCCCCChhh-HHHHHHHhcCcc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhc-C-C
Q 040319 413 ARSGKPEHAILLFHQSQSEATVVPDEIA-LTSVLGVCGTLG-FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC-C-N 488 (812)
Q Consensus 413 ~~~g~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~-g-~ 488 (812)
.+.+..++|++++.++.. +.|+..| |+.--..+...+ .++++..+.+.+++... -+..+|+.-...+.+. + +
T Consensus 65 ~~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred HhCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence 334555678888888776 6666554 333333333344 36666666666665432 2444554444444444 4 5
Q ss_pred HHHHHHHHccCCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCch
Q 040319 489 MSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGD--------EALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 489 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~ 556 (812)
.++++.+++.+.+ +|..+|+--...+.+.|.++ ++++.++++++ ..|.. ..++.....+.. .+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~--l~~ 216 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVS--RPG 216 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTT--STT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh--ccc
Confidence 6666666666654 44556655444444444444 66666666666 34433 344444334433 332
Q ss_pred -------HHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCC
Q 040319 557 -------VDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGF 592 (812)
Q Consensus 557 -------~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~ 592 (812)
+++++++++.+.. +.|+ ...|+-+-.++.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCC
Confidence 4555555555543 2232 3444444444444443
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=2.5e-05 Score=81.12 Aligned_cols=145 Identities=8% Similarity=-0.062 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLV 584 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 584 (812)
..|..+...+.+.|++++|+..|++.++ +.|+... +.. .|..+++...+. ...|..+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~--~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQL--YGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTC--CHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhh--cccHHHHHHHHH-----------HHHHHHHH
Confidence 4566777888889999999999999888 6676542 234 667766654431 23688899
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh-hCCCcch
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS-SSGRWHN 661 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-~~g~~~~ 661 (812)
.+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|+..++++++++|+++.++..|..+.. ..+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 455 67889999999999999999999999999999999999999998844 4567778
Q ss_pred HHHHHHHHHh
Q 040319 662 SELVREDMRE 671 (812)
Q Consensus 662 a~~~~~~m~~ 671 (812)
+.+++++|-.
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8888887744
No 168
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=4e-05 Score=66.38 Aligned_cols=76 Identities=11% Similarity=-0.043 Sum_probs=48.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC------CCCCchHHHH
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME------PQDPATYILV 649 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l 649 (812)
..|..+..++.+.|++++|++.+++.. ..| +...|..+..++...|+.+.|...++++++++ |+++.....+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 344444444555555555555554432 334 46677777777888888888888888888888 7766666666
Q ss_pred Hhhh
Q 040319 650 SNLY 653 (812)
Q Consensus 650 ~~~y 653 (812)
..+.
T Consensus 119 ~~~~ 122 (126)
T 3upv_A 119 YKAS 122 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=6.4e-06 Score=70.49 Aligned_cols=82 Identities=11% Similarity=0.039 Sum_probs=55.0
Q ss_pred cCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHH
Q 040319 590 WGFLEEAEETINNMP-F---QP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 590 ~g~~~~A~~~~~~m~-~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
.|++++|+..+++.. . .| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666665533 3 24 345666777777777777777777777777778777777778888888888888877
Q ss_pred HHHHHHh
Q 040319 665 VREDMRE 671 (812)
Q Consensus 665 ~~~~m~~ 671 (812)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
No 170
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.88 E-value=0.00019 Score=79.82 Aligned_cols=168 Identities=9% Similarity=-0.048 Sum_probs=134.5
Q ss_pred CCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCC
Q 040319 487 CNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ----------GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYT 552 (812)
Q Consensus 487 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~ 552 (812)
...++|.+.++++.. .+...|+.--..+...|+ ++++++.++++.+ ..|.. .+|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~- 119 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR- 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH-
Confidence 344677888877664 455778877777777777 8999999999998 67766 556655556666
Q ss_pred CCc--hHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc----
Q 040319 553 NLN--LVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWG-FLEEAEETINNMP-FQP-KVSVWRALLDSCRIR---- 622 (812)
Q Consensus 553 ~~g--~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g-~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---- 622 (812)
.| +++++.+.++.+.+ +.| +...|+.-..++.+.| .+++|++.++++. ..| |...|......+...
T Consensus 120 -l~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 120 -LPEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp -CSSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred -cccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 77 77999999999987 344 4667888888888889 8999999999876 556 788999988887663
Q ss_pred ----------CCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcch
Q 040319 623 ----------LNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHN 661 (812)
Q Consensus 623 ----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 661 (812)
+.++++...++++++++|+|..+|..+.+++.+.|+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999999665
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.88 E-value=0.00017 Score=73.56 Aligned_cols=211 Identities=10% Similarity=0.033 Sum_probs=150.1
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhc-C-ChHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCC-NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH-R-QGDEALAV 526 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l 526 (812)
..++|..+.+.++..+. -+..+|+.--..+...| .+++++..++.+.. ++..+|+.-...+... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34567888888887652 35566777666677778 59999999998765 6678898887777776 7 89999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHH--------HHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCC----
Q 040319 527 WSSMEKASIKPDA-ITFVLIISAYRYTNLNLVD--------SCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGF---- 592 (812)
Q Consensus 527 ~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~---- 592 (812)
++++++ ..|.. ..+..-.-...+ .|..+ +++++++.+.+. .| +...|+....++.+.|+
T Consensus 148 ~~k~L~--~dpkNy~AW~~R~wvl~~--l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 148 IHGSLL--PDPKNYHTWAYLHWLYSH--FSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHTS--SCTTCHHHHHHHHHHHHH--HHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHH--hccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccc
Confidence 999998 66654 455443333333 44444 899999988862 34 46778888888888876
Q ss_pred ---hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHccC------CC
Q 040319 593 ---LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNT--------------------TIGKRVAKHILAME------PQ 641 (812)
Q Consensus 593 ---~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~ 641 (812)
++++++.++++. ..| |...|.-+-..+...|+. ......+..+.... +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 689999988865 556 788998888777766543 22222222222222 35
Q ss_pred CCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 642 DPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 642 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+.+...|+++|...|+.++|.++++.+.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 566788999999999999999999999864
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.88 E-value=4.7e-05 Score=66.10 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
..|..+...|.+.|++++|++.|++.++ +.|+. ..+..+..++.. .|++++|++.|+...+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~--~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFE--EKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHH--hhhHHHHHHHHHHHHH
Confidence 4566677777788888888888888877 56665 455666666767 7777777777776654
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.87 E-value=6.5e-05 Score=77.95 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=80.8
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD----------------IVSWNGLIAGHLLHRQGDEALAVWSSMEKA 533 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 533 (812)
+...+..+...|.+.|++++|...|++... |+ ...|..+...|.+.|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 566788899999999999999999987654 33 36778888888888888888888888888
Q ss_pred CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHH
Q 040319 534 SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 534 g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A 596 (812)
+.|+. ..+..+..++.. .|++++|...|+...+ +.|+ ...+..+..++.+.|+.++|
T Consensus 225 -~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLA--VNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55654 555555556666 6777777777766654 2232 33444444444444444444
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.86 E-value=2.8e-05 Score=67.49 Aligned_cols=95 Identities=6% Similarity=0.038 Sum_probs=81.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------CchHH
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD-------PATYI 647 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 647 (812)
...|..+...+...|++++|...+++.. ..| +..+|..+...+...|+.+.|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456777888888999999999888754 334 67788888888999999999999999999998876 77899
Q ss_pred HHHhhhhhCCCcchHHHHHHHHHh
Q 040319 648 LVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 648 ~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.83 E-value=5.6e-05 Score=76.22 Aligned_cols=101 Identities=7% Similarity=-0.144 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALL 616 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll 616 (812)
..+..+...+.. .|++++|...|+...+ ..| +...|..+..+|.+.|++++|++.+++.. ..| +...|..+.
T Consensus 5 ~~~~~~g~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFV--GRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 444455555555 6666666666666654 234 35556666666666666666666666533 444 345566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 617 DSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 617 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
.++...|+.++|...++++++++|+++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 66666666666666666666666655433
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=8.2e-05 Score=80.35 Aligned_cols=187 Identities=8% Similarity=-0.101 Sum_probs=131.0
Q ss_pred HhhhcCCHHHHHHHHccCCC--CC------------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS--HD------------------IVSWNGLIAGHLLHRQGDEALAVWSSMEKA-SIKPDAI 540 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~--~~------------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~ 540 (812)
.+.+.|++++|.+.|..+.+ |+ ..++..|+..|...|++++|.+.+.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 35566777777777665432 11 124677889999999999999999887652 1112221
Q ss_pred ---HHHHHHH-HhcCCCCchHHHHHHHHHHhhhhc---CccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-------C
Q 040319 541 ---TFVLIIS-AYRYTNLNLVDSCRKLFLSMKTIY---NIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-------F 605 (812)
Q Consensus 541 ---t~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-------~ 605 (812)
.....+. .+.. .|..+++.++++...... +..+ ....+..++.+|...|++++|..++++.. -
T Consensus 93 ~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQV--PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHCSC--CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2222333 3444 789999999988765421 2222 24577889999999999999999988743 1
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC---C----CchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 606 QPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ---D----PATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 606 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+|. ..++..++..|...|++++|..++++++.+.|. + ...+..++.+|...|++++|...+...-
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 232 457777888899999999999999999876432 1 2456788899999999999988776653
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.77 E-value=3.7e-05 Score=68.35 Aligned_cols=117 Identities=13% Similarity=-0.027 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASL 583 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l 583 (812)
..|......+...|++++|+..|++.++ +.|+...- .+ ....| +...|..+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~----~a----------------------~~~~~~~a~a~~n~ 63 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE----EA----------------------FDHAGFDAFCHAGL 63 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT----SC----------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch----hh----------------------hhhccchHHHHHHH
Confidence 3455666777778888888888888887 66651000 00 00000 11245555
Q ss_pred HHHHhhcCChHHHHHHHHhCC--------CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 584 VSVLGYWGFLEEAEETINNMP--------FQPK-VSVW----RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~--------~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
..++.+.|++++|+..+++.. +.|+ ...| .....++...|++++|...++++++++|+|.+.+.-+
T Consensus 64 g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 64 AEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 555666666666555555432 3785 5688 8999999999999999999999999999988765544
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.77 E-value=0.00013 Score=69.01 Aligned_cols=95 Identities=8% Similarity=-0.086 Sum_probs=80.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-K----------------VSVWRALLDSCRIRLNTTIGKRVAKHILAM 638 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 638 (812)
...+..+...+.+.|++++|++.+++.. ..| + ..+|..+..++...|+++.|...+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4456677778888888888888887743 222 2 267888888899999999999999999999
Q ss_pred CCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 639 EPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 639 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|+++.++..++.+|...|++++|.+.+++..+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754
No 179
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.77 E-value=4.2e-05 Score=64.27 Aligned_cols=93 Identities=11% Similarity=-0.033 Sum_probs=79.3
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHH
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PATYI 647 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 647 (812)
+...|..+...+.+.|++++|++.+++.. ..| +..+|..+..++...|+.+.|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567778888999999999999988854 445 67889899999999999999999999999999998 77888
Q ss_pred HHHhhhhhCCCcchHHHHHHH
Q 040319 648 LVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 648 ~l~~~y~~~g~~~~a~~~~~~ 668 (812)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999998888765543
No 180
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.76 E-value=6e-05 Score=66.20 Aligned_cols=64 Identities=8% Similarity=-0.135 Sum_probs=41.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
..|..+..++...|++++|...+++.. ..| +...|..+..++...|+.+.|...+++++++.|+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 344444555555555555555554432 233 4667777777788888888888888888888776
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.73 E-value=6.5e-05 Score=64.55 Aligned_cols=67 Identities=21% Similarity=0.091 Sum_probs=39.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
...|..+..++.+.|++++|+..+++.. ..| +...|..+..++...|+.++|...++++++++|+++
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 3444444555555555555555555533 344 466777777778888888888888888888888754
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.69 E-value=3.8e-05 Score=65.56 Aligned_cols=104 Identities=14% Similarity=0.009 Sum_probs=71.2
Q ss_pred CchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|+..|++..+...-.| +...|..+..+|.+.|++++|++.+++.. ..| +..++..+..++...|+.++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 5667777777777665100023 25667778888888888888888888754 445 57788888888999999999999
Q ss_pred HHHHHHccCCCCCchHHHHHhhhhhCC
Q 040319 631 VAKHILAMEPQDPATYILVSNLYSSSG 657 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~~~g 657 (812)
.++++++..|+++........+..-.+
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 999999999988766544433333333
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.67 E-value=9.3e-05 Score=67.38 Aligned_cols=129 Identities=12% Similarity=0.005 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLV 584 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 584 (812)
..|......+.+.|++++|+..|++.++ +.|+.. .-.. ....+. ..+. +.....|..+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~--~~~~~~-------~~~~--~~~~~~-----~~~~-----~~~~~~~~nla 70 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALT--RLDTLI-------LREK--PGEPEW-----VELD-----RKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH-------HTSC--TTSHHH-----HHHH-----HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhc-------ccCC--CCHHHH-----HHHH-----HHHHHHHHHHH
Confidence 4566777788888888888888888776 211000 0000 010000 0000 11245677788
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC-chHHHHHhhhh
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP-ATYILVSNLYS 654 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y~ 654 (812)
.+|.+.|++++|+..+++.. +.| +...|..+..++...|+++.|...++++++++|+++ .....+..+..
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 88888888888888888754 455 577888999999999999999999999999999987 55555555443
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.66 E-value=0.00093 Score=67.87 Aligned_cols=209 Identities=9% Similarity=-0.056 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCC----------HHHHHHHHccCCC---CChhHHHHHHHHHHhcCC--
Q 040319 455 EMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCN----------MSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ-- 519 (812)
Q Consensus 455 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~----------~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-- 519 (812)
++|..+.+.++..+. .+..+|+.--..+...|. +++++.+++.+.. ++..+|+.-...+...|+
T Consensus 47 ~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 466777777776432 133344432222222222 5778888877654 677888888877878784
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCch-HHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhc------
Q 040319 520 GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNL-VDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYW------ 590 (812)
Q Consensus 520 ~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~------ 590 (812)
+++++++++++.+ ..|.. ..|+.---.+.. .|. +++++++++.+.+. .| +...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~--l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 126 WARELELCARFLE--ADERNFHCWDYRRFVAAQ--AAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhcccc
Confidence 7899999999998 56654 455544444445 666 68899999988862 34 456676666666554
Q ss_pred --------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 591 --------GFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR-----------LNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 591 --------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+.++++++.+++.. ..| |...|+-+-..+... +.++.+...++++++++|++.-.+..+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 45788999888855 556 788887666665544 457889999999999999875554444
Q ss_pred Hhhh---hhCCCcchHHHHHHHHHh
Q 040319 650 SNLY---SSSGRWHNSELVREDMRE 671 (812)
Q Consensus 650 ~~~y---~~~g~~~~a~~~~~~m~~ 671 (812)
+.+. ...|..+++...+.++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHH
Confidence 3322 235666677777777654
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.65 E-value=0.00025 Score=61.34 Aligned_cols=74 Identities=14% Similarity=-0.041 Sum_probs=48.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhh
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNL 652 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 652 (812)
.+..+..++.+.|++++|.+.+++.. ..|+ ..++..+..++...|+.+.|...++++++..|+++........+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 44555556666666666666665533 2332 45566677778888888888888888888888876555444433
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.63 E-value=6e-05 Score=68.15 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=60.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC------CCc
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP----FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ------DPA 644 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~ 644 (812)
.+..+...+...|++++|.+.+++.. ..++ ..++..+...+...|+.+.|...+++++++.+. .+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44555556666666666666655532 0111 345666666777778888888888777765322 234
Q ss_pred hHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 645 TYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 645 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.+..++.+|...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 67788889999999999988887764
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.61 E-value=0.00017 Score=57.84 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=67.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...+..+...+.+.|++++|+..+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567777888888888888888888754 344 57788888888999999999999999999999999999999998887
Q ss_pred hCC
Q 040319 655 SSG 657 (812)
Q Consensus 655 ~~g 657 (812)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.60 E-value=9.4e-05 Score=64.00 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL 583 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 583 (812)
..|..+...+...|++++|+..|++..+ ..|+ ...+..+...+.. .|++++|..+|+...+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~---~~------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFE--KGDYNKCRELCEKAIEVG---RE------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHH---HH-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHH--hccHHHHHHHHHHHHhhc---cc-------
Confidence 4566666667777777777777777666 3343 2344444445555 555666665555554311 10
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 584 VSVLGYWGFLEEAEETINNMPFQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
..++ ..+|..+...+...|+.+.|...+++++++.| ++.....+..++..
T Consensus 71 ---------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 ---------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp ---------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ---------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 0112 45666677777777888888888888888777 46666666555443
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.59 E-value=0.00017 Score=59.41 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...|..+...+...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778999999999999999999999999999999999999999999999999999999988743
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.59 E-value=0.00011 Score=77.21 Aligned_cols=137 Identities=7% Similarity=-0.041 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHH
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYAS 582 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 582 (812)
...|..+...|.+.|++++|++.|++.++ +.|+.. . .-..+++ . ...| +...|..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~--~~~~~~~-------~---~~~~~~~~~~~n 278 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------A--AAEDADG-------A---KLQPVALSCVLN 278 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------H--HSCHHHH-------G---GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------c--ccChHHH-------H---HHHHHHHHHHHH
Confidence 34577788888888999999998888876 222110 0 0001111 0 0122 3567888
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcc
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWH 660 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 660 (812)
+..+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|...++++++++|++...+..++.++...|+.+
T Consensus 279 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 279 IGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998854 566 57788899999999999999999999999999999999999999999998888
Q ss_pred hHHH
Q 040319 661 NSEL 664 (812)
Q Consensus 661 ~a~~ 664 (812)
++.+
T Consensus 359 ~a~k 362 (370)
T 1ihg_A 359 DKEK 362 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 191
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.59 E-value=0.00027 Score=59.03 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=39.6
Q ss_pred HHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhc
Q 040319 477 NSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD---AITFVLIISAYR 550 (812)
Q Consensus 477 ~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~ 550 (812)
..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHHHHHHH
Confidence 3344444444444444444443321 2334444444455555555555555555544 2333 233333444444
Q ss_pred CCCC-chHHHHHHHHHHhh
Q 040319 551 YTNL-NLVDSCRKLFLSMK 568 (812)
Q Consensus 551 ~~~~-g~~~~a~~~~~~m~ 568 (812)
. . |++++|.+.|+...
T Consensus 88 ~--~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 88 Y--IEGKEVEAEIAEARAK 104 (112)
T ss_dssp T--CSSCSHHHHHHHHHHG
T ss_pred H--HhCCHHHHHHHHHHHh
Confidence 4 4 44555555444444
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.57 E-value=0.00015 Score=65.31 Aligned_cols=132 Identities=13% Similarity=0.039 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----c
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIK-PDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----S 577 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 577 (812)
+..+...|...|++++|+..+++..+..-. ++. .++..+...+.. .|++++|.++++...+...-.++ .
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 444444555555555555555554431100 111 234444444445 56666666665554431111111 3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-------FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
..+..+..++...|++++|.+.+++.. ..+ ...++..+...+...|+.+.|...+++++++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 455666677777777777777766532 111 134566677778888999999999888887643
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.55 E-value=0.00024 Score=74.57 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4568888888999999999999999999999999999999999999999999999999998754
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.00011 Score=62.26 Aligned_cols=77 Identities=9% Similarity=0.045 Sum_probs=64.5
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 595 EAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 595 ~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|++.+++.. ..| +...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555532 445 5778888888999999999999999999999999999999999999999999999999988754
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.49 E-value=0.00023 Score=77.22 Aligned_cols=95 Identities=8% Similarity=-0.060 Sum_probs=78.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-FQPK----------------VSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
..|..+...|.+.|++++|+..|++.. +.|+ ..+|..+..++...|+++.|+..++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 345556666666777777776666543 2232 57888899999999999999999999999999
Q ss_pred CCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 641 QDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 641 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+++.+|..++.+|...|++++|...+++..+.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998654
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00078 Score=72.52 Aligned_cols=194 Identities=11% Similarity=-0.026 Sum_probs=108.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCC---cee---------------eeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh
Q 040319 377 DMLTRCGRMADAEKMFYRWPTDRD---DSI---------------IWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE 438 (812)
Q Consensus 377 ~~y~~~g~~~~A~~~f~~~~~~~~---~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 438 (812)
..+.+.|++++|.+.|..+....+ +.. ++..+...|...|++++|.+.+.+.....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445677777777777766431111 111 13455666677777777777666655411111111
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--------CC-hhHHHH
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--------HD-IVSWNG 509 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------~~-~~~~~~ 509 (812)
.+ ...+.+.+...+...|+.+.|..++..... +. ..++..
T Consensus 92 ~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 92 KT-------------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HH-------------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HH-------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 10 011222333344445555555555544321 11 235666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-----cch
Q 040319 510 LIAGHLLHRQGDEALAVWSSMEKA----SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-----SEH 579 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~ 579 (812)
+...|...|++++|..++++.... +-+|.. ..+..+...|.. .|++++|..+++.......-.++ ...
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK--LRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 777777778888888777776542 112222 345666667777 88888888888766542211121 345
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC
Q 040319 580 YASLVSVLGYWGFLEEAEETINNM 603 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m 603 (812)
+..++..+...|++++|...+.+.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 677777888888888887766543
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.46 E-value=0.00018 Score=77.99 Aligned_cols=121 Identities=17% Similarity=0.075 Sum_probs=90.3
Q ss_pred CchHHHHHHHHHHhhhhcC--ccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYN--IEPT----SEHYASLVSVLGYWGFLEEAEETINNMP---------FQPK-VSVWRALLD 617 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~ 617 (812)
.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|..
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6777777777766544221 2222 4567888888888888888888877643 2343 457888888
Q ss_pred HHHhcCCHHHHHHHHHHHHc-----cCCCCCch---HHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 618 SCRIRLNTTIGKRVAKHILA-----MEPQDPAT---YILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
.|..+|++++|+..++++++ +.|++|.+ ...|...+...|++++|..++.++++.-.
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999986 46776544 45788899999999999999999987543
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=4.1e-05 Score=67.89 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=60.0
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 589 YWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN----------TTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 589 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
|.+++++|.+.+++.. ..| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3344555555554432 333 44455555555444443 57999999999999999999999999999987
Q ss_pred C-----------CcchHHHHHHHHHhC
Q 040319 657 G-----------RWHNSELVREDMREK 672 (812)
Q Consensus 657 g-----------~~~~a~~~~~~m~~~ 672 (812)
| ++++|.+.+++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999988653
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.42 E-value=0.00039 Score=56.06 Aligned_cols=69 Identities=14% Similarity=0.005 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 606 QPKVSVWRALLDSCRIRLN---TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 606 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
++|+..|..+..+....++ .+.|...++++++++|+++.+...+++++.+.|++++|...++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467788888888655544 69999999999999999999999999999999999999999999977544
No 200
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.32 E-value=0.00021 Score=74.07 Aligned_cols=112 Identities=5% Similarity=-0.039 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSC 619 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 619 (812)
..+..+...+.. .|++++|...|+...+ +.|+.. .+...|+.+++...+.. .+|..+..++
T Consensus 180 ~~~~~~g~~~~~--~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFK--EEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCS--SSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHH
Confidence 445555556666 7777777777777654 223221 12233444444433321 3788888889
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
...|+++.|...++++++++|+++.+|..++.+|...|++++|.+.+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999864
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.27 E-value=0.00024 Score=62.94 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=38.1
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHccCCCCCch
Q 040319 593 LEEAEETINNMP-FQP-KVSVWRALLDSCRIR-----------LNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
+++|+..|++.. +.| +..+|..+..+|... |++++|...++++++++|++..+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 346666666643 455 355677777777665 58999999999999999987543
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.20 E-value=0.00097 Score=72.23 Aligned_cols=115 Identities=10% Similarity=-0.037 Sum_probs=87.6
Q ss_pred HHhhcCChHHHHHHHHhCC------C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc-----CCCC---CchHH
Q 040319 586 VLGYWGFLEEAEETINNMP------F---QPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAM-----EPQD---PATYI 647 (812)
Q Consensus 586 ~l~~~g~~~~A~~~~~~m~------~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~~ 647 (812)
.+...|++++|+.++++.. + .|+ ..+++.|..+|...|++++|+..+++++++ .|++ ...+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999987642 2 333 458888999999999999999999999874 4554 45678
Q ss_pred HHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHH
Q 040319 648 LVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLK 718 (812)
Q Consensus 648 ~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 718 (812)
.|+.+|..+|++++|..++++..+.-. + .-...||...++...+.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-V-----------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-H-----------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888754211 0 1124799999988888777665543
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.0081 Score=61.19 Aligned_cols=138 Identities=11% Similarity=0.003 Sum_probs=63.7
Q ss_pred CChhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcC------CCCchHHHHHHHHHHhhh
Q 040319 502 HDIVSWNGLIAGHL--LHRQ---GDEALAVWSSMEKASIKPDA-ITFVLIISAYRY------TNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 502 ~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~------~~~g~~~~a~~~~~~m~~ 569 (812)
.+...|...+.+.. ..+. ..+|+.+|++.++ ..|+. ..+..+.-++.. ............++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666766665543 3333 4789999999999 88986 333332222210 000011111111111111
Q ss_pred hcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 570 IYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 570 ~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
......+...|..+.-.+.-.|++++|...++++. +.|+...|..+...+...|+.++|...+++++.++|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 01112234444444444444455555555555543 3444444444444444555555555555555555554
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.18 E-value=0.0011 Score=70.80 Aligned_cols=112 Identities=10% Similarity=-0.065 Sum_probs=75.7
Q ss_pred hhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc-----CCCC---CchHHHH
Q 040319 588 GYWGFLEEAEETINNMP------FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAM-----EPQD---PATYILV 649 (812)
Q Consensus 588 ~~~g~~~~A~~~~~~m~------~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~~~l 649 (812)
.+.|++++|++++++.. +.|+ ..+++.|..+|...|++++|+..+++++++ .|++ ...+..|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 34455555555554421 2222 346667777777778888888777777753 3444 4457889
Q ss_pred HhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 040319 650 SNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECL 717 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 717 (812)
+.+|...|++++|..++++..+.-. + .-...||...+++..|.+...+|+
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888754210 0 113479999999999988887775
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0009 Score=55.80 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 607 PKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 607 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
++...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345678888889999999999999999999999999999999999999999999999999988653
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.98 E-value=0.0048 Score=54.06 Aligned_cols=113 Identities=8% Similarity=-0.092 Sum_probs=83.7
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGK 629 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~ 629 (812)
.+++++|.++|+...+ .| +.... |..+|...+.+++|++.+++.-...++..+..|...|.. .+|.++|.
T Consensus 8 ~~d~~~A~~~~~~aa~-~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE-LN---EMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHH-TT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHc-CC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3467777777777765 33 22223 667777777777788888775434566677777777776 78889999
Q ss_pred HHHHHHHccCCCCCchHHHHHhhhhh----CCCcchHHHHHHHHHhCCC
Q 040319 630 RVAKHILAMEPQDPATYILVSNLYSS----SGRWHNSELVREDMREKGF 674 (812)
Q Consensus 630 ~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 674 (812)
..++++.+. .++.++..|+.+|.. .+++++|.+++++.-+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999888876 467888899999998 8899999999988877654
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.96 E-value=0.0038 Score=69.35 Aligned_cols=150 Identities=9% Similarity=-0.002 Sum_probs=119.2
Q ss_pred HhcCC-hHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhcCCCCch----------HHHHHHHHHHhhhhcCccCC-cchHH
Q 040319 515 LLHRQ-GDEALAVWSSMEKASIKPDAITF-VLIISAYRYTNLNL----------VDSCRKLFLSMKTIYNIEPT-SEHYA 581 (812)
Q Consensus 515 ~~~g~-~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~y~ 581 (812)
.+.|. .++|++.++++++ +.|+..|. +.--.++.. .|. ++++.+.++.+.+ ..|. ...|.
T Consensus 39 ~~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~--l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~ 111 (567)
T 1dce_A 39 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQH--LETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWH 111 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHh--cccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHH
Confidence 34444 4789999999999 88988653 333333334 455 8999999999987 3454 66788
Q ss_pred HHHHHHhhcC--ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 582 SLVSVLGYWG--FLEEAEETINNMP-FQP-KVSVWRALLDSCRIRL-NTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 582 ~li~~l~~~g--~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
.-.-++.+.| ++++|+++++++. ..| |..+|+.-.......| ..+.+...++++++.+|+|..+|...+.++.+.
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 8888889999 6799999999976 555 7889999988888888 899999999999999999999999999998874
Q ss_pred --------------CCcchHHHHHHHHHh
Q 040319 657 --------------GRWHNSELVREDMRE 671 (812)
Q Consensus 657 --------------g~~~~a~~~~~~m~~ 671 (812)
++++++.+..++.-.
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHh
Confidence 556788887766644
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.85 E-value=0.0039 Score=54.62 Aligned_cols=113 Identities=5% Similarity=-0.147 Sum_probs=91.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhh----cCC
Q 040319 517 HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGY----WGF 592 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~ 592 (812)
.+++++|++.|++..+.| .|+.. +-..|.. .+.+++|.++|+...+. -+...+..|..+|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~--g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNS--QINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCT--TSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCC
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHc--CCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCcc
Confidence 346789999999999987 44444 5555666 67788899999988762 467788888888888 889
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCC
Q 040319 593 LEEAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 593 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p 640 (812)
+++|++.+++.--.-++..+..|...|.. .+|.++|...++++.+...
T Consensus 77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999986544567778888888888 8999999999999998754
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.85 E-value=0.002 Score=51.24 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888888899999999999999999999999999999999999999999999999998755
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0015 Score=69.51 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcc-----CCCC---CchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCcee
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAM-----EPQD---PATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRS 681 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s 681 (812)
.+++.|..+|...|++++|+..+++++++ .|++ ...|..|+.+|..+|++++|..++++..+.-. +
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~----- 414 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-V----- 414 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-H-----
Confidence 35555666666666666666666666542 3443 44577888889999999999888887644211 0
Q ss_pred EEEECCEEEEEeeCCCCCcchHHHHHHHH
Q 040319 682 WIIHQNKVHSFYVRDKSHPREKDIYSGLE 710 (812)
Q Consensus 682 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~ 710 (812)
.-...||...+++..|+
T Consensus 415 ------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 415 ------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp ------------HTCTTCHHHHHHHHHHH
T ss_pred ------------HcCCCChHHHHHHHHHh
Confidence 11246888887766554
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.73 E-value=0.00065 Score=70.24 Aligned_cols=150 Identities=5% Similarity=0.011 Sum_probs=88.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccch
Q 040319 375 LLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFH 454 (812)
Q Consensus 375 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~ 454 (812)
.++++.+.|++.-....+..+. ..++...-.++-..|....+++.-. .-+..|.+...+
T Consensus 384 vV~~~~k~~~LpLIkpYL~~Vq-~~N~~aVNeAln~L~IEEEDy~~LR--------------------~SId~ydNFD~i 442 (624)
T 3lvg_A 384 AVNYFSKVKQLPLVKPYLRSVQ-NHNNKSVNESLNNLFITEEDYQALR--------------------TSIDAYDNFDNI 442 (624)
T ss_dssp THHHHHTTTCGGGGTGGGTSCC-CSCCHHHHHHHHHHHHHTTCCHHHH--------------------HTTSSCCCSCTT
T ss_pred HHHHHHhcCCchhhHHHHHHHH-HhhHHHHHHHHHHHHhhhhhHHHHH--------------------HHHHHhccccHH
Confidence 3455667777777777777766 5554555555666666666654322 222233334444
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040319 455 EMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA 533 (812)
Q Consensus 455 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 533 (812)
..|.++- + ..-...-..-...|.|.++++++..+.++=.- +| .|..-+..|+.+-|.++++-..+.
T Consensus 443 ~LA~rLE----k---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~ 509 (624)
T 3lvg_A 443 SLAQRLE----K---HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQE 509 (624)
T ss_dssp HHHHHHH----T---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHh----h---CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4444331 1 11222333445678889999998877643221 22 233445678888888898888886
Q ss_pred CCCCCHHHHHHHHHHhcCCCCchHHHHHHH
Q 040319 534 SIKPDAITFVLIISAYRYTNLNLVDSCRKL 563 (812)
Q Consensus 534 g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~ 563 (812)
| +...|.+.|-.|-+ .=+++-+.++
T Consensus 510 g---~~EcF~a~LytCYd--LlrpDvVlEl 534 (624)
T 3lvg_A 510 E---KRECFGACLFTCYD--LLRPDVVLET 534 (624)
T ss_dssp C---STHHHHHHHHHTSS--SSSCHHHHHH
T ss_pred C---chHHHHHHHHHHhh--ccChHHHHHH
Confidence 5 55678888888877 5555555443
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.72 E-value=0.0027 Score=53.42 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=56.2
Q ss_pred HHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040319 560 CRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHIL 636 (812)
Q Consensus 560 a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 636 (812)
+.+.|+...+ ..| +...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555543 233 35667777777777778877777777644 344 56678888888888899999999988888
Q ss_pred ccCCC
Q 040319 637 AMEPQ 641 (812)
Q Consensus 637 ~~~p~ 641 (812)
++.|+
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 88775
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.48 E-value=0.0086 Score=48.54 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=53.6
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVS-VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
.+..+.+.|++++|++.+++.. ..| +.. .|..+..++...|+.+.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4566778899999999988854 455 566 888888889999999999999999999999988776
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.45 E-value=0.0062 Score=49.75 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
+...|..+...|...|++++|+..|++.++ ..|+. ..+..+..++.. .|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYER--LDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Confidence 344555566666666666666666666665 44443 444455555555 6666666666655543
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.39 E-value=0.057 Score=63.22 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=68.3
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHH
Q 040319 378 MLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMG 457 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a 457 (812)
....+|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+..
T Consensus 661 ~~l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHH
Confidence 4567899999999987765 367899999999999999999999988765 33444444445666655
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHcc
Q 040319 458 KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNK 498 (812)
Q Consensus 458 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 498 (812)
..+-......|. ++.-..+|.++|++++|.+++.+
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444444331 23344456667777777666544
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.21 E-value=0.02 Score=60.81 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=67.0
Q ss_pred CchHHHHHHHHHHhhhhc--CccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIY--NIEPT----SEHYASLVSVLGYWGFLEEAEETINNMP---------FQPK-VSVWRALLD 617 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~--~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~ 617 (812)
.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 567777777777654421 12232 4567888888888888888888887743 3344 457888888
Q ss_pred HHHhcCCHHHHHHHHHHHHcc-----CCCCCchH
Q 040319 618 SCRIRLNTTIGKRVAKHILAM-----EPQDPATY 646 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~ 646 (812)
.|..+|++++|+..+++++++ .|++|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 899999999999999999874 67766543
No 217
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.19 E-value=0.0024 Score=66.15 Aligned_cols=409 Identities=10% Similarity=0.072 Sum_probs=236.5
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 166 TVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIG 245 (812)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 245 (812)
...|..+..+....+...+|++-|-+. -|...|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 445778888888888887777766332 35667788888888888888877777666554 344556678888
Q ss_pred HHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC------------------------CCccc
Q 040319 246 FYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE------------------------KNSVS 301 (812)
Q Consensus 246 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------------------------~d~~~ 301 (812)
+|+|.+++.+-.+++ ..+|..-...+..-+...|.++.|.-+|..+.. .++.+
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888888877644432 345666666777777788888888777776653 37789
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCC-CchhHHHHHHHHHH
Q 040319 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLG-SNDCIEAALLDMLT 380 (812)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~~y~ 380 (812)
|..+-.+|...+.+.-|.-.--.++- .|| -+..++.-|-..|.+++-..+++... |++ ....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 99999999999988766544333321 122 22345556777777777777766554 343 57788999999999
Q ss_pred hcCCHHHHHHHHhcCCCC---C------CceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCc
Q 040319 381 RCGRMADAEKMFYRWPTD---R------DDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTL 451 (812)
Q Consensus 381 ~~g~~~~A~~~f~~~~~~---~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~ 451 (812)
|- ++++-.+.++..-+. + .....|..++-.|.+-.+++.|... |.. -.|+...-..+.....+.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~---h~~~Aw~h~~Fkdii~KV 347 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMN---HPTDAWKEGQFKDIITKV 347 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTS---CHHHHCCGGGGTTTGGGC
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHh---CChhhccHHHHHHHHHHc
Confidence 86 455555554433211 1 1255789999999998888877643 322 111211111122222233
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHH-------------HHHHhhhcCCHHHHHHHHccCCCCChhHHH-HHHHHHHhc
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANS-------------MVSMYFKCCNMSNAIKAFNKMPSHDIVSWN-GLIAGHLLH 517 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~-------------Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~ 517 (812)
++.+.--+....-++ -.+...+- .+.++.|.|++.-....+..+...|...-| ++-..|...
T Consensus 348 aN~EiyYKAi~FYL~----e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE 423 (624)
T 3lvg_A 348 ANVELYYRAIQFYLE----FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 423 (624)
T ss_dssp SCSHHHHHHHHHHTT----SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHH----hChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 332222111111111 11111222 345566666666666666666666665555 344455555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHH
Q 040319 518 RQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAE 597 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~ 597 (812)
.+++ +...-+.+|-. -..+.-|.++ .+ .+-.+.-..-..+|.+.+++++|+
T Consensus 424 EDy~-------------------~LR~SId~ydN--FD~i~LA~rL----Ek----HeL~eFRrIAA~LYkkn~rw~qsi 474 (624)
T 3lvg_A 424 EDYQ-------------------ALRTSIDAYDN--FDNISLAQRL----EK----HELIEFRRIAAYLFKGNNRWKQSV 474 (624)
T ss_dssp TCCH-------------------HHHHTTSSCCC--SCTTHHHHHH----HT----CSSHHHHHHHHHHHHTTCHHHHHS
T ss_pred hhHH-------------------HHHHHHHHhcc--ccHHHHHHHH----hh----CchHHHHHHHHHHHHhcccHHHHH
Confidence 5543 22222222322 2222222221 11 111222233345677888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 598 ETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 598 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
++.++=.+ |.-.+......|+.+.++..++-.++.+
T Consensus 475 ~l~KkDkl------ykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 475 ELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp SCSSTTCC------TTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred HHHHhccc------HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77665332 2223334456677777777776666644
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.17 E-value=0.0066 Score=49.24 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCc-hHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPA-TYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
....+...|+++.|...++++++++|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345677889999999999999999999999 9999999999999999999999988654
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.00 E-value=0.01 Score=57.85 Aligned_cols=87 Identities=10% Similarity=0.073 Sum_probs=70.5
Q ss_pred hHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHccCCCC-CchHHHHHhhhhhC-CCcch
Q 040319 593 LEEAEETINNMP-FQPK---VSVWRALLDSCRI-----RLNTTIGKRVAKHILAMEPQD-PATYILVSNLYSSS-GRWHN 661 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 661 (812)
..+|..++++.. +.|+ ...|..|...|.. -|+.++|++.+++++++.|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 455666666643 6776 5678888888877 499999999999999999974 99999999999995 99999
Q ss_pred HHHHHHHHHhCCCCCCCc
Q 040319 662 SELVREDMREKGFRKHPS 679 (812)
Q Consensus 662 a~~~~~~m~~~g~~~~~~ 679 (812)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999988766654454
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.99 E-value=0.029 Score=57.14 Aligned_cols=134 Identities=12% Similarity=0.065 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHhcC---CCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHh----hcC-------ChHHHHHH
Q 040319 535 IKPDAITFVLIISAYRY---TNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLG----YWG-------FLEEAEET 599 (812)
Q Consensus 535 ~~pd~~t~~~ll~a~~~---~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~----~~g-------~~~~A~~~ 599 (812)
...|...|...+.+... .......+|..+|++..+ +.|+ ...|..+.-++. ..+ .+.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34444556666654332 013456899999999987 5687 344443333221 111 12233333
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 600 INNMPF-QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 600 ~~~m~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
...+.. +.++.+|..+.-.+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 334443 447888888877777789999999999999999985 678899999999999999999999887554
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.82 E-value=0.042 Score=58.45 Aligned_cols=96 Identities=7% Similarity=-0.132 Sum_probs=58.7
Q ss_pred CchHHHHHHHHHHhhhhcC--ccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYN--IEPT----SEHYASLVSVLGYWGFLEEAEETINNMP---------FQPK-VSVWRALLD 617 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~ 617 (812)
.|.+++|..++++..+... +.|+ ..+++.+..+|...|++++|+.++++.. ..|+ ..+++.|..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 4555555555554443111 1122 3456666666667777777776666532 2343 456777778
Q ss_pred HHHhcCCHHHHHHHHHHHHc-----cCCCCCchHHHH
Q 040319 618 SCRIRLNTTIGKRVAKHILA-----MEPQDPATYILV 649 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~l 649 (812)
.|..+|++++|+..++++++ +.|++|.+-..+
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 88888888888888888876 467776555443
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.47 E-value=0.47 Score=55.34 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=67.1
Q ss_pred HhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHH
Q 040319 143 LYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGR 222 (812)
Q Consensus 143 ~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 222 (812)
....+| +++.|.++.+.+. +...|..+...+.+.|+++.|.+.|..+ .. |..+...+...++.+...
T Consensus 661 ~~l~~~-~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 661 LALKVG-QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHT-CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhhhcC-CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHH
Confidence 345567 8999999887764 5578999999999999999999999988 33 445555555566666655
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 040319 223 AVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVA 258 (812)
Q Consensus 223 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (812)
.+-......|. ++....+|.+.|++++|.+
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHH
Confidence 55555554431 2334445666677777666
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.46 E-value=0.062 Score=46.95 Aligned_cols=93 Identities=12% Similarity=-0.058 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHHH
Q 040319 555 NLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWG---FLEEAEETINNMP-FQ-P--KVSVWRALLDSCRIRLNTTI 627 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g---~~~~A~~~~~~m~-~~-p--~~~~~~~ll~~~~~~~~~~~ 627 (812)
..+..+.+.|.+..+ .+ .++.++...+.-+|.+.+ ++++++.++++.. .. | +.-.+-.|.-+|.+.|+++.
T Consensus 12 ~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 344455555554433 11 255566666666666666 4456666665533 22 4 23455666777899999999
Q ss_pred HHHHHHHHHccCCCCCchHHHH
Q 040319 628 GKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 628 a~~~~~~~~~~~p~~~~~~~~l 649 (812)
|.+.++++++++|+|..+....
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999877655543
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.37 E-value=0.045 Score=47.81 Aligned_cols=91 Identities=9% Similarity=-0.011 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHccC-C-CCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCce
Q 040319 606 QPKVSVWRALLDSCRIRL---NTTIGKRVAKHILAME-P-QDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSR 680 (812)
Q Consensus 606 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~ 680 (812)
.++..+...+..+..+.+ ++++|..+++.+++.+ | ++...+..|+-.|.+.|++++|.+.++..-+. +|+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i----eP~- 103 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----EPQ- 103 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----CTT-
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCC-
Confidence 467888888888888877 6779999999999998 7 56788999999999999999999999998542 222
Q ss_pred eEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 040319 681 SWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYV 722 (812)
Q Consensus 681 s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 722 (812)
|++... -...+.+++++.|.+
T Consensus 104 ------------------n~QA~~---Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 104 ------------------NNQAKE---LERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CHHHHH---HHHHHHHHHHHTTCC
T ss_pred ------------------CHHHHH---HHHHHHHHHHHhhHH
Confidence 444443 345566777777765
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.27 E-value=0.082 Score=42.17 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=56.5
Q ss_pred cCCcchHHHHHHHHhhcCC---hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 574 EPTSEHYASLVSVLGYWGF---LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 574 ~p~~~~y~~li~~l~~~g~---~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
.+++..+..+..++...+. .++|..++++.. ..| +...+..+...+...|+++.|...++++++.+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3567788888888865554 689999998865 667 466777777789999999999999999999999843
No 226
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.03 E-value=6.7 Score=45.16 Aligned_cols=256 Identities=10% Similarity=0.039 Sum_probs=132.7
Q ss_pred HHHHhhCChhHHHHHhccCCCC----Ccc--cHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCC---H-hHHHHHH-H
Q 040319 276 IAYMEFGYVDLAVEIFDKMPEK----NSV--SYNALLAGYCKNGKAMEALGLFVKLLEEGL--VLT---E-FTLTSVV-N 342 (812)
Q Consensus 276 ~~~~~~g~~~~A~~~f~~m~~~----d~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~---~-~t~~~ll-~ 342 (812)
-+.+..|+.++++.+++..... +.. .-..+.-|....|..+++..++...+...- .-+ . ......+ -
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3566788899999999877642 211 222333456677777788888877665321 011 1 1111111 1
Q ss_pred --HhccchhhhhHHHHHhhHHHhcCCCch--hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce-eeeHHHHHHHHHcCC
Q 040319 343 --ACGLIMEAKLSEQIHGFVMKFGLGSND--CIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS-IIWTSMICGYARSGK 417 (812)
Q Consensus 343 --a~~~~~~~~~a~~i~~~~~~~g~~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~ 417 (812)
++...++- .+...+..++...- +.. ...-+|...|.-.|+-+....++..+....++. .-.-++.-|+...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 11222232 22333333322110 111 111233334455677666666665543122212 222333345567889
Q ss_pred hhhHHHHHHHhcccCCCCCChhhHHH---HHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHH
Q 040319 418 PEHAILLFHQSQSEATVVPDEIALTS---VLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIK 494 (812)
Q Consensus 418 ~~~A~~~~~~m~~~~g~~p~~~t~~~---ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 494 (812)
.+.+-.+.+.+.. ......-|.. +.-+|+..|+....++++..+.... ..++.-...+.-+..-.|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 8888888888775 1112223332 3346788889888888888877632 2233322222223334666677777
Q ss_pred HHccCCC-CC--hhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHH
Q 040319 495 AFNKMPS-HD--IVSWNGLIAGHLLHRQG-DEALAVWSSMEKASIKPDAI 540 (812)
Q Consensus 495 ~f~~~~~-~~--~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~ 540 (812)
+++.+.+ .| +..--++.-|....|.. .+|+.++..+.. .+|..
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~ 662 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDF 662 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHH
Confidence 7765543 33 33333444455555555 678888888865 45553
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.91 E-value=0.074 Score=43.55 Aligned_cols=73 Identities=16% Similarity=0.006 Sum_probs=54.4
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP---------FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
.-+-.|...+.+.|+++.|...++... -.+...++..|..++.+.|+++.|...++++++++|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 344556666777777777777766532 12346688889999999999999999999999999998776554
Q ss_pred HH
Q 040319 649 VS 650 (812)
Q Consensus 649 l~ 650 (812)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.82 E-value=1.1 Score=37.70 Aligned_cols=140 Identities=13% Similarity=0.068 Sum_probs=85.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
...|..++..++..+..... +..-++-++--... .-+-+-..+.++.+-+-+.+. .+|++.
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD--~a~C~y~v~vLd~IGkiFDis--------------~C~NlK 78 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLE--SIDCRYMFQVLDKIGSYFDLD--------------KCQNLK 78 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHH--HCCHHHHHHHHHHHGGGSCGG--------------GCSCTH
T ss_pred HHhhhHHHHHHHHHHHcCCC---Cccccceeeeecch--hhchhHHHHHHHHHhhhcCcH--------------hhhcHH
Confidence 34677777788877776632 22233333321111 222333444555554433332 244444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 595 EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 595 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
...+-+-.+. .+.-...--|.....+|..++-..+...++.-+|-+|....-+++.|.+.|+..+|.+++++.-++|+
T Consensus 79 rVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 79 SVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4444443332 12223444566777889999888888887666666788999999999999999999999999999888
Q ss_pred C
Q 040319 675 R 675 (812)
Q Consensus 675 ~ 675 (812)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.54 E-value=8.4 Score=42.54 Aligned_cols=260 Identities=13% Similarity=0.077 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcC
Q 040319 371 IEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGT 450 (812)
Q Consensus 371 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~ 450 (812)
.-+.-+..+.+.++.......+.. + +.+...-.....+....|+..+|......+-......|+ ....++..+.+
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~--p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~ 148 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-K--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-C--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH--HHHHHHHHHHH
Confidence 334455566677777777775554 2 122333344556666777777777766666552223333 33445544443
Q ss_pred ccchHHH--HHHHHHHHHhC-----------CCCch-hHHHHHHHHhhhcCCHHHHHHHHccCCCCChhH---HHHHHHH
Q 040319 451 LGFHEMG--KQIHSYALKTG-----------FSSDL-GVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVS---WNGLIAG 513 (812)
Q Consensus 451 ~~~~~~a--~~~~~~~~~~g-----------~~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~---~~~li~~ 513 (812)
.|.+... .+=...+...| +.++. .....++..+.+-..+ ....... .++... ...-+.-
T Consensus 149 ~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 149 SGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFAS 224 (618)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHH
Confidence 3322111 11111111111 11111 1112222222222222 1111111 111111 1111222
Q ss_pred HHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhc
Q 040319 514 HLLHRQGDEALAVWSSMEKAS-IKPDAI--TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYW 590 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 590 (812)
+++ .+.+.|..+|....+.+ +.+... ....+...... .+...++...+...... .++.....-.+....+.
T Consensus 225 lar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG--NDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS--TTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHH
T ss_pred HHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH--cCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHC
Confidence 333 47899999998886543 322222 12222223333 45355666666654431 23322233334444578
Q ss_pred CChHHHHHHHHhCCCCC-CHHHHH-HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 591 GFLEEAEETINNMPFQP-KVSVWR-ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 591 g~~~~A~~~~~~m~~~p-~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
|+++.|...|+.|+..+ +..-|. -+..+....|+.+.|..+++++.+ + ...|-.|
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 99999999999998443 222222 233456778999999999999975 3 2456555
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.91 E-value=0.55 Score=45.80 Aligned_cols=112 Identities=10% Similarity=0.082 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHccCCCCC--hhHHHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcC
Q 040319 486 CCNMSNAIKAFNKMPSHD--IVSWNGLIAG-HLLH--RQ------GDEALAVWSSMEKASIKPD---AITFVLIISAYRY 551 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~~~--~~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~ 551 (812)
.|+..+-...+.++...| ...|..++.+ +... |. ...|...+++.++ +.|+ ...+..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 444445555566665433 4567776653 3332 32 3567777788777 7777 2455655555554
Q ss_pred C---CCchHHHHHHHHHHhhhhcCccC--CcchHHHHHHHHhhc-CChHHHHHHHHh
Q 040319 552 T---NLNLVDSCRKLFLSMKTIYNIEP--TSEHYASLVSVLGYW-GFLEEAEETINN 602 (812)
Q Consensus 552 ~---~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~li~~l~~~-g~~~~A~~~~~~ 602 (812)
. .-|+.++|.++|++..+ +.| ++.++..+.+.|++. |+.++|.+.+++
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 01778888888887776 456 266777777777663 667776666665
No 231
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=92.47 E-value=7.7 Score=43.00 Aligned_cols=80 Identities=13% Similarity=-0.054 Sum_probs=42.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHh---
Q 040319 305 LLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTR--- 381 (812)
Q Consensus 305 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~--- 381 (812)
....+.-.|+++.|++.+... ...|.+.+...+..++-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 455667789999999887654 46677777777776554442 11111110 00 11 2225567777765
Q ss_pred cCCHHHHHHHHhcC
Q 040319 382 CGRMADAEKMFYRW 395 (812)
Q Consensus 382 ~g~~~~A~~~f~~~ 395 (812)
..+..+|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 45666676666554
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.27 E-value=1.2 Score=37.18 Aligned_cols=75 Identities=9% Similarity=-0.055 Sum_probs=49.5
Q ss_pred CCcchHHHHHHHHhhcCChHH---HHHHHHhCC-CC-C-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 040319 575 PTSEHYASLVSVLGYWGFLEE---AEETINNMP-FQ-P-K-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYI 647 (812)
Q Consensus 575 p~~~~y~~li~~l~~~g~~~~---A~~~~~~m~-~~-p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 647 (812)
|+..+-..+.-+|.+.....+ ++.++++.. .. | + .-..-.|.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555555555666666665444 666665543 22 3 1 223344555789999999999999999999999876655
Q ss_pred HH
Q 040319 648 LV 649 (812)
Q Consensus 648 ~l 649 (812)
+.
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.12 E-value=0.26 Score=55.53 Aligned_cols=53 Identities=6% Similarity=-0.004 Sum_probs=50.2
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 618 SCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
-|...|+++.|..+++++...-|++..+|..|+.+|...|+|+.|.-.+..++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 36778999999999999999999999999999999999999999999999885
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.82 E-value=3.2 Score=37.12 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=73.3
Q ss_pred HHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSC 560 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a 560 (812)
+....+|+++.|.++.+++ .+...|..|......+|+++-|.+.|.+... +.-..+| |.. .|+.+.-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~L--y~~--tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFL--YLV--TGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHH--HHH--HTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHH--HHH--hCCHHHH
Confidence 3445678888888877665 4567888888888888888888888877543 1111122 222 4444443
Q ss_pred HHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 561 RKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 561 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
.++-+.... ..-++.-...+.-.|+++++.+++.+..--|.+. -..+.+|.-+.|.++.+.+
T Consensus 80 ~kla~iA~~-------~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQT-------REDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHH-------TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHH-------CccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 333222221 1123444445556677777777777654222221 1234467777777665543
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.54 E-value=3.9 Score=36.58 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=61.0
Q ss_pred HHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHH
Q 040319 379 LTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGK 458 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 458 (812)
-.++|+++.|.++-+.+. +...|..+.......|+++-|.+.|.+... +..+.-.+...|+.+.-.
T Consensus 15 AL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHH
Confidence 457888888888877664 366888888888889999988888887765 233333334445544444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccC
Q 040319 459 QIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKM 499 (812)
Q Consensus 459 ~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 499 (812)
.+-......| -++.-...+.-.|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4433333333 1223333344455555555555443
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.10 E-value=0.7 Score=37.50 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-------CCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAME-------PQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.-...|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|....++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344567788899999999999999999853 23456789999999999999999999998754
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.03 E-value=1.3 Score=37.13 Aligned_cols=66 Identities=5% Similarity=-0.123 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHccC-C-CCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 606 QPKVSVWRALLDSCRIRLNTT---IGKRVAKHILAME-P-QDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 606 ~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.|+..+-..+.++..+.++.. +|..+++.++.-+ | ........|+-.+.+.|++++|.+..+.+-+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 366667677777777766554 5999999998877 5 4566788899999999999999999999854
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.33 E-value=18 Score=38.10 Aligned_cols=169 Identities=12% Similarity=0.078 Sum_probs=84.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhc
Q 040319 303 NALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRC 382 (812)
Q Consensus 303 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 382 (812)
..|...|...|++.+|.+++.++...-...+.... . ..++...+..|...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~--------------k----------------ve~~l~q~rl~l~~ 190 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE--------------K----------------IQFILEQMELSILK 190 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH--------------H----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH--------------H----------------HHHHHHHHHHHHHC
Confidence 45667788889999999888888653211111110 0 11222234455555
Q ss_pred CCHHHHHHHHhcCCC------CCCc--eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHH-----H-h
Q 040319 383 GRMADAEKMFYRWPT------DRDD--SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLG-----V-C 448 (812)
Q Consensus 383 g~~~~A~~~f~~~~~------~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~-----a-~ 448 (812)
+++..|..++.++.. ..++ ...+..++..+...+++.+|.+.|.+........-|...+..++. . .
T Consensus 191 ~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL 270 (445)
T 4b4t_P 191 GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL 270 (445)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh
Confidence 666655555544310 0110 122444555566667777776666665431112222222221111 1 1
Q ss_pred cCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhc--CCHHHHHHHHccCCCCC
Q 040319 449 GTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC--CNMSNAIKAFNKMPSHD 503 (812)
Q Consensus 449 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~--g~~~~A~~~f~~~~~~~ 503 (812)
+..+ .+... +.....+...-++...+..|+.+|... .+++.+.+.|.....++
T Consensus 271 a~~~-~~~~~-ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 271 SPYG-NLQND-LIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp SSCS-STTHH-HHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred CCCC-chHHH-HHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 1111 11222 222222222335677888899988764 56788888887765543
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.06 E-value=6.8 Score=33.40 Aligned_cols=43 Identities=7% Similarity=0.115 Sum_probs=19.0
Q ss_pred HHHHHHHHHHccCCC-CCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 627 IGKRVAKHILAMEPQ-DPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+|..+++.++.-+|. .......|+-.|.+.|++++|.+..+.+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444444444442 2223334444444455555554444444
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.62 E-value=2.8 Score=36.08 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=67.3
Q ss_pred CCChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 501 SHDIVSWNGLIAGHLLHRQG------DEALAVWSSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 501 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
..|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|..+.--|+ .|.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA------------~~~----- 71 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA------------ELK----- 71 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH------------HHH-----
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH------------HHH-----
Confidence 46778888888888888888 7888888888774 66652 11111111110 001
Q ss_pred cCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 571 YNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 571 ~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
..++.++|.++|+.+. -+.=+.+|-....--.++|++..|++++.+++.+.|.+...
T Consensus 72 ------------------ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 72 ------------------AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp ------------------HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred ------------------HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 1133344444443331 01116677777777778999999999999999999874443
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.75 E-value=57 Score=37.64 Aligned_cols=218 Identities=9% Similarity=-0.022 Sum_probs=110.6
Q ss_pred HHhcCCHHHHHHHHhcCCCC--CCce--eeeHHHHHHHHHcCChhhHHHHHHHhcccCC-CCC---Ch-hhHHH---HHH
Q 040319 379 LTRCGRMADAEKMFYRWPTD--RDDS--IIWTSMICGYARSGKPEHAILLFHQSQSEAT-VVP---DE-IALTS---VLG 446 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~~--~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p---~~-~t~~~---ll~ 446 (812)
....|+.+++..+++..... .++. ..-..+.-|....|...+++.++........ +.- +. +...+ +--
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 45678888888888876521 1111 1222333456677777778887776554111 000 01 11111 112
Q ss_pred HhcCccchHHHHHHHHHHHHhCCC-CchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHH
Q 040319 447 VCGTLGFHEMGKQIHSYALKTGFS-SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD-IVSWNGLIAGHLLHRQGDE 522 (812)
Q Consensus 447 a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~ 522 (812)
++...++- .+...+..++...-. ......-+|.-.|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22323333 333334333332110 0011223445556677887777777665432 22 2223334455567899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH-HHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHh--hcCChHHHHHH
Q 040319 523 ALAVWSSMEKASIKPDAITFVLI-ISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLG--YWGFLEEAEET 599 (812)
Q Consensus 523 A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~--~~g~~~~A~~~ 599 (812)
+..+.+.+... ....+-|..+ ..+|+..+.|+.....+++..+..+ ++..+-...+-+++ -.|..+.+..+
T Consensus 543 ~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 543 ADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99998888872 2222344432 2233333388988777788888762 33333333344443 35665555566
Q ss_pred HHhC
Q 040319 600 INNM 603 (812)
Q Consensus 600 ~~~m 603 (812)
++.+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 5543
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=85.46 E-value=16 Score=30.86 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=44.2
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 040319 165 DTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGL 233 (812)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 233 (812)
+..-.+..+..++.+|.-++-.+++..+.. ..+|++.....+..||.+.|+..++.+++.++-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333445566777777777777777776412 4456666677777777777777777777777777664
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=82.13 E-value=3.2 Score=35.75 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHhhcCCh------HHHHHHHHhCC--CCCC-HHHHHHHHHH------HHhcCCHHHHHHHHHHHHccCC
Q 040319 576 TSEHYASLVSVLGYWGFL------EEAEETINNMP--FQPK-VSVWRALLDS------CRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~------~~A~~~~~~m~--~~p~-~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~p 640 (812)
+.++|-..++.+-+.|+. ++-.++|++.. ++|+ ...|...+.. +...+|++.|+.+++.++++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 356666666666666666 55556665532 3443 2233333321 2344899999999999998865
Q ss_pred CCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 641 QDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 641 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
.-+..+...+.--.++|+.+.|.++..+....+.
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5677788888889999999999999998766544
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.92 E-value=42 Score=33.14 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCHhHHHHHHHHhc
Q 040319 270 TLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGL----FVKLLEEGLVLTEFTLTSVVNACG 345 (812)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 345 (812)
.|.++..=|.+++++++|++++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455556666666666666666432 22345566776665554 455556788888888777777665
Q ss_pred cch-----hhhhHHHHHhhHHHhcC--CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHc
Q 040319 346 LIM-----EAKLSEQIHGFVMKFGL--GSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARS 415 (812)
Q Consensus 346 ~~~-----~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~ 415 (812)
... ..+.......+-.+.|- .-++.....+...|.+.|++.+|+..|-.- ..+|...+..|+.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~--~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG--THDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS--CHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCccHHHHHHHHHHHHHh
Confidence 432 12222333333333332 246778888888899999999998888622 222244555555444443
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.44 E-value=14 Score=29.05 Aligned_cols=60 Identities=12% Similarity=-0.057 Sum_probs=44.5
Q ss_pred HHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHH
Q 040319 276 IAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLT 338 (812)
Q Consensus 276 ~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 338 (812)
..+...|++++|..+.+.+.-||..+|-+|-. .+.|..+++...+.++-.+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 46677888888888999999999999988765 46788888888787777665 34444443
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.96 E-value=20 Score=30.49 Aligned_cols=75 Identities=11% Similarity=-0.023 Sum_probs=47.5
Q ss_pred cCCcchHHHHHHHHhhcCCh---HHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 040319 574 EPTSEHYASLVSVLGYWGFL---EEAEETINNMP-FQP-KVS-VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYI 647 (812)
Q Consensus 574 ~p~~~~y~~li~~l~~~g~~---~~A~~~~~~m~-~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 647 (812)
.|+..+--.+.-+|.++... .+++.++++.- ..| +.. ..--|.-++.+.|+++.|++..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 35555555555556555543 34555554432 233 222 3334555789999999999999999999998766544
Q ss_pred H
Q 040319 648 L 648 (812)
Q Consensus 648 ~ 648 (812)
+
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 4
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.89 E-value=51 Score=32.82 Aligned_cols=133 Identities=13% Similarity=0.181 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCHhHHHHHHHHhc
Q 040319 270 TLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLF----VKLLEEGLVLTEFTLTSVVNACG 345 (812)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~ 345 (812)
+|.++..=|.+++++++|++++-. -...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455556666666666666666422 233455667765555443 55566788888888777777665
Q ss_pred cchh-----hhhHHHHHhhHHHhc--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHc
Q 040319 346 LIME-----AKLSEQIHGFVMKFG--LGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARS 415 (812)
Q Consensus 346 ~~~~-----~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~ 415 (812)
.... .....+...+-.+.| ..-|+.....+...|.+.+++.+|+..|-. . ..+.+..+..|+.-+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g-~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-G-TKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-S-CTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-c-CCchHHHHHHHHHHHHHh
Confidence 4432 122223333333334 234667777888888888999999888842 2 333234555554444433
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.26 E-value=6.2 Score=33.19 Aligned_cols=72 Identities=10% Similarity=-0.018 Sum_probs=38.1
Q ss_pred cCCcchHHHHHHHHhhcCCh---HHHHHHHHhCC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 574 EPTSEHYASLVSVLGYWGFL---EEAEETINNMP-FQP-K-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 574 ~p~~~~y~~li~~l~~~g~~---~~A~~~~~~m~-~~p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
.|++.+--.+.-+|.+.... .+++.++++.- ..| + .-.+--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 35555555555556555543 34555554432 223 1 2233344445666666666666666666666665443
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.00 E-value=22 Score=27.96 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
..++|.-|-+.+...+- ...+--.=+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666655443 22222222345678899999999999999999999988765 467888888877777766
Q ss_pred CCCCCCHHHHH
Q 040319 533 ASIKPDAITFV 543 (812)
Q Consensus 533 ~g~~pd~~t~~ 543 (812)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.47 E-value=10 Score=31.83 Aligned_cols=85 Identities=8% Similarity=-0.070 Sum_probs=45.4
Q ss_pred HHHHHHHHH-HC-CCCCCHHHHHHHHHHhcCC-CCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHH
Q 040319 523 ALAVWSSME-KA-SIKPDAITFVLIISAYRYT-NLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEET 599 (812)
Q Consensus 523 A~~l~~~m~-~~-g~~pd~~t~~~ll~a~~~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~ 599 (812)
-++.|++.- +. +-.|+..|--....++.+. ...+..+|+.+++.+.+. +-.-..+.+--|.-++.|.|++++|.+.
T Consensus 22 eL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y 100 (134)
T 3o48_A 22 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRY 100 (134)
T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344454443 32 3344443333333333331 223556777777777652 2111245555666677777888888777
Q ss_pred HHhCC-CCCC
Q 040319 600 INNMP-FQPK 608 (812)
Q Consensus 600 ~~~m~-~~p~ 608 (812)
.+.+. .+|+
T Consensus 101 ~d~lL~~eP~ 110 (134)
T 3o48_A 101 VDTLFEHERN 110 (134)
T ss_dssp HHHHHTTCTT
T ss_pred HHHHHhhCCC
Confidence 77744 6665
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.36 E-value=21 Score=28.03 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
..++|.-|-+.+...+- ...+--.=+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 35566666666655443 22222222345678899999999999999999999988765 467888888888878777
Q ss_pred CCCCCCHHHHH
Q 040319 533 ASIKPDAITFV 543 (812)
Q Consensus 533 ~g~~pd~~t~~ 543 (812)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444444
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=76.43 E-value=5.3 Score=35.10 Aligned_cols=26 Identities=4% Similarity=0.067 Sum_probs=22.4
Q ss_pred chHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 644 ATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 644 ~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
..-..++.+|.+.|++++|..+.+.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 45677999999999999999998765
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.78 E-value=13 Score=29.44 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=39.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 597 EETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 597 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+.-+-.+.+-|++.+..+.|.||++.+|+..|.+++|-+...-.+....|-.+
T Consensus 33 lN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 33 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 33333455789999999999999999999999999998865443334555554
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.24 E-value=4.5 Score=41.99 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh-----CCCCCCC
Q 040319 612 WRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE-----KGFRKHP 678 (812)
Q Consensus 612 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-----~g~~~~~ 678 (812)
...++.++...|+.+.+...++.++..+|-+...|..|..+|.+.|+..+|.+.++..+. .|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344556677788888888888888899998888999999999999999999888877654 3665543
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.70 E-value=9.4 Score=33.52 Aligned_cols=111 Identities=7% Similarity=-0.083 Sum_probs=52.9
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC-----CCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHH-HH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS-----HDI-------VSWNGLIAGHLLHRQGDEALAVWSSMEKAS-IKPDAITF-VL 544 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~-----~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~-~~ 544 (812)
-+..+...|.++.|+-+.+.+.. |++ .+...+..++...|++..|...|++.++.. .-|...+. ..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 35556666777777666554321 332 133445566666777777777777764421 22222111 00
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCC
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPF 605 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~ 605 (812)
+-. ...... .....++.+.---+..+|...|+.++|+.+++..|.
T Consensus 106 ~~~------~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TGN------SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccc------cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 000 000000 001122233333466677777888888888877773
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.82 E-value=1e+02 Score=32.30 Aligned_cols=95 Identities=11% Similarity=-0.041 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc-Ccc--CC--
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY-NIE--PT-- 576 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~-~~~--p~-- 576 (812)
...|...|...|++.+|..++.++...-...+. ..+...+..|.. .+++.+|..+++.+.... ... |+
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~--~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL--KGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 345777888889999999998888643222222 234445556777 889999998888764311 112 22
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNM 603 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m 603 (812)
...|.+++..+...+++.+|-..|.+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456889999999999999988776553
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.51 E-value=85 Score=31.25 Aligned_cols=133 Identities=15% Similarity=0.028 Sum_probs=81.7
Q ss_pred HHHHHHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHHHhc
Q 040319 37 NPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIEL----FFRMRSEGIVPNEHSFVAILTACIRL 112 (812)
Q Consensus 37 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~ 112 (812)
.++..-|.+++++++|.+++.. =...+.+.|....|-.+ .+.+.+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3456668888999999987633 22345566776655544 35556678888888888888777765
Q ss_pred CChHH-----HHHHHHHHHHhC--CCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCC
Q 040319 113 LELEL-----GFQIHALIVKMG--CVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFE 181 (812)
Q Consensus 113 ~~~~~-----a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~ 181 (812)
..-+. ..+...+-.+.| -.-|+.....+-..|.+.+ .+.+|+.-|=....+....+..|+.-+...+.
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~-~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG-EFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTT-CHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 53221 222233333444 3346777777778888888 88888888754333333555555544444433
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=70.98 E-value=15 Score=37.96 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhh----hcCccCCcchH
Q 040319 508 NGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKT----IYNIEPTSEHY 580 (812)
Q Consensus 508 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~y 580 (812)
..++..+...|++++|+..++.+.. ..| +...+..++.++.. .|+..+|.+.|+...+ +.|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~--~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYL--SDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3456667777888888888777776 455 55677777888877 8888888888776543 46777776543
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.19 E-value=23 Score=27.82 Aligned_cols=85 Identities=20% Similarity=0.146 Sum_probs=58.4
Q ss_pred CchHHHHHHHHHHHhccCCCccchHHHHH--HHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 040319 13 EVSLAKAIHASLIKLLLEQDTRFGNPLIS--AYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRM 90 (812)
Q Consensus 13 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 90 (812)
.-++|..+-+.+-..|- .-...||+ .+...|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++
T Consensus 22 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 45677777777765542 33334444 4567899999999999999999999987765 3667777777777677
Q ss_pred HHCCCCCChhhHHH
Q 040319 91 RSEGIVPNEHSFVA 104 (812)
Q Consensus 91 ~~~g~~p~~~~~~~ 104 (812)
..+| .|....|..
T Consensus 96 a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ-DPRIQTFVN 108 (116)
T ss_dssp TTCC-CHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7665 444444443
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.78 E-value=69 Score=29.11 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=70.0
Q ss_pred HHHHHHHHhCC-CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCCCCchHHHHHhhhhhCCCcchHHHHHH
Q 040319 594 EEAEETINNMP-FQPKVS---VWRALLDSCRIRLNTTIGKRVAKHILA--MEPQDPATYILVSNLYSSSGRWHNSELVRE 667 (812)
Q Consensus 594 ~~A~~~~~~m~-~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 667 (812)
+++...|...+ .+.|.. +|-.++..| ..++......+++.+.. +.-.-+..|...+..|...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444 445554 444444443 24556778888888875 456677889999999999999999999998
Q ss_pred HHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcccC
Q 040319 668 DMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPD 724 (812)
Q Consensus 668 ~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~ 724 (812)
.=.+++-+ | ...+-....++..+|...+++-+
T Consensus 140 ~GI~~~A~------------------------P-~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 140 LGAENNCR------------------------P-YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHHTTCB------------------------S-HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCc------------------------c-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 76554332 2 24455666788888988887433
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=68.09 E-value=20 Score=28.34 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHH
Q 040319 520 GDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVS 585 (812)
Q Consensus 520 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 585 (812)
.-+..+-+..+....+-|+.....+.|.||.+ .+++..|.++|+.++.+- .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRR--vND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRR--LNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 33455666667777788999999999999988 899999999999887643 333556776654
No 262
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=67.84 E-value=59 Score=32.03 Aligned_cols=124 Identities=10% Similarity=0.053 Sum_probs=71.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhc---C
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYW---G 591 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~---g 591 (812)
...|++++|+..|+..+.. ..+..... ....+++.++.....+ | ....-+++--|. .
T Consensus 125 ~t~gKf~eAl~~Fr~iL~~----------i~l~~v~~--~~e~~e~~eli~icrE-Y-------ilal~iEl~Rr~l~~~ 184 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIYR----------ITLLMVDD--AEDEKLAHKILETARE-Y-------ILGLSIELERRSLKEG 184 (325)
T ss_dssp HHTTCHHHHHHHHHHHHHH----------HHTCCBCS--SHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHTCCTT
T ss_pred HhcCCHHHHHHHHHHHHHH----------hheeeecc--HHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHhcCcc
Confidence 4578888888888887651 11111112 3344444444443332 1 111111211121 2
Q ss_pred ChHHHHHHHHh---CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHH
Q 040319 592 FLEEAEETINN---MPFQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 592 ~~~~A~~~~~~---m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
+..+..++--- ..+.|. ..+..+-++.+.+++|+.-|...+++++++.|... ..++|.++.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil 250 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIK 250 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHH
Confidence 34455555333 335663 55778888889999999999999999999998511 334567776
Q ss_pred HHHHhC
Q 040319 667 EDMREK 672 (812)
Q Consensus 667 ~~m~~~ 672 (812)
..-...
T Consensus 251 ~~ce~~ 256 (325)
T 3mv2_A 251 NKADSM 256 (325)
T ss_dssp HHHHTS
T ss_pred HHHhcC
Confidence 665543
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.29 E-value=61 Score=30.94 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHh
Q 040319 215 CFVLMEGRAVHAHAIRIGLGANLS--VNNALIGFYTKCGRVKDVVALLE 261 (812)
Q Consensus 215 ~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~l~~ 261 (812)
.+......++...+.+.|..++.. ...+.+...++.|..+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344444455666666666554432 11223344445566555555443
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=66.54 E-value=1e+02 Score=30.33 Aligned_cols=132 Identities=8% Similarity=0.037 Sum_probs=80.7
Q ss_pred hHHHHHHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHHHh
Q 040319 36 GNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIEL----FFRMRSEGIVPNEHSFVAILTACIR 111 (812)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 111 (812)
+.++..-|.+++++++|..++.. -...+.+.|+...|-.+ .+...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44566677888888888887643 22334566776655553 4555667888888887777777665
Q ss_pred cCCh-----HHHHHHHHHHHHhCC--CCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcC
Q 040319 112 LLEL-----ELGFQIHALIVKMGC--VDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNE 179 (812)
Q Consensus 112 ~~~~-----~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~ 179 (812)
...- .-......+-.+.|- .-|+.....+-..|.+.| ++.+|+.-|-.....|...+..|+.-+.+.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~-~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGD-FVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 4321 222233333334432 246777777888888888 888888877643323455555555544443
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.32 E-value=61 Score=38.98 Aligned_cols=62 Identities=6% Similarity=-0.075 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc-----hHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA-----TYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
-|.-++..+.+++..+.+.+.++.+++..+.+.. .|..+-+.+.+.|++++|......+++.
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 3444445555555555555555555554322211 2344445555556666666655555443
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=66.01 E-value=76 Score=28.55 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=40.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 040319 234 GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNG 313 (812)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 313 (812)
.++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+..+....+...+.+++...-...+.++.+.|
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34455555555555555554444444444444444444444555555544333333333333344433333444444443
Q ss_pred ChHHHHHHHHHHH
Q 040319 314 KAMEALGLFVKLL 326 (812)
Q Consensus 314 ~~~~A~~l~~~m~ 326 (812)
. .++...+..+.
T Consensus 167 ~-~~~~~~L~~~l 178 (201)
T 3ltj_A 167 G-ERVRAAMEKLA 178 (201)
T ss_dssp S-HHHHHHHHHHH
T ss_pred c-hhHHHHHHHHH
Confidence 3 23334444433
No 267
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=65.31 E-value=21 Score=40.31 Aligned_cols=50 Identities=14% Similarity=0.005 Sum_probs=28.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSM 567 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m 567 (812)
+...|+++-|+++-++... ..|+. .||..|..+|.. .|+++.|+-.++++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~--l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIK--KEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHH--TTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHH--hccHHHHHHHHhcC
Confidence 3345566666666666555 55554 555555556655 66666666555555
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.03 E-value=90 Score=31.47 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=43.2
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCCCCh---hHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPSHDI---VSWNGLIAGHLLHRQ--GDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd 538 (812)
.+.++.-|...|+.++|.+.++++..|.- +...++..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 45678889999999999999999887642 334455555544333 3457778888877765443
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.47 E-value=84 Score=28.52 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=41.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 040319 235 ANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGK 314 (812)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 314 (812)
++..+-...+..+.+.|+.+....+.+.+..++...-...+.++.+.+..+....+...+.++|...-...+.++.+.+.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 44444455555555555544444444444444544444455555555543333333333334444444444444444443
Q ss_pred hHHHHHHHHHHHH
Q 040319 315 AMEALGLFVKLLE 327 (812)
Q Consensus 315 ~~~A~~l~~~m~~ 327 (812)
.++...+..+..
T Consensus 173 -~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 -ERVRAAMEKLAE 184 (211)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHh
Confidence 334444444443
No 270
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=63.84 E-value=2.3 Score=26.66 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=8.6
Q ss_pred cCCccCCCCC
Q 040319 802 LNGQCSCKDY 811 (812)
Q Consensus 802 ~~g~csc~~~ 811 (812)
++|.||||-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 6899999976
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=63.56 E-value=41 Score=28.23 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 595 EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 595 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
.++.-+-.+.+-|++.+..+-|.+|++.+|+..|.+++|-+...-.+....|-.+.
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33444444557899999999999999999999999999988654333345565543
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.24 E-value=1.3e+02 Score=30.86 Aligned_cols=56 Identities=13% Similarity=-0.022 Sum_probs=26.3
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
+..-|.. .|++.+|.+++..+.++..-..+ .+.|..-+.+|...|++.++...+.+
T Consensus 105 L~~l~~~--~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFD--TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3334444 55555555555555442211111 33444555555555665555555543
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=60.73 E-value=57 Score=31.21 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=56.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCCh
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAIT-FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFL 593 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~ 593 (812)
.+.|..++|++....-++ -.|.... =..++.-++- .|+++.|.+-++...+ +.|+...-..+..-+.++.+.
T Consensus 8 l~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv--~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCI--DGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHHH
Confidence 445566666666655555 3444322 2223333444 5666666655555543 233322111111111111111
Q ss_pred HHHHHHHHh--CC--CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 594 EEAEETINN--MP--FQPKVSVWRALLDS--CRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 594 ~~A~~~~~~--m~--~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
.+ ++|.. .| +.....-...|+.+ ....|+.+.|...-+++++.-|..++.
T Consensus 81 R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 81 RK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 11 12221 22 11122223334444 334688888888888888887765553
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.01 E-value=55 Score=31.75 Aligned_cols=147 Identities=10% Similarity=0.003 Sum_probs=68.3
Q ss_pred chHHHHHHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhc
Q 040319 35 FGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHS--FVAILTACIRL 112 (812)
Q Consensus 35 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~ 112 (812)
...+.+...++.|+.+-+..+++.-..++...-.+.+...+..|+.+-+ +.+.+.|..++... -.+.|...+..
T Consensus 30 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 30 HGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 3344555566677777777777654332222112233334455554433 33344455444221 11223333455
Q ss_pred CChHHHHHHHHHHHHhCCCCchHH---HHHHHHHhhhcCCCHHHHHHHHhcCCCC-CcchHHHHHHHHHcCCChhHHHHH
Q 040319 113 LELELGFQIHALIVKMGCVDSVFV---TNALMGLYGKFSFCLDYLLKLFDELPHK-DTVSWNTVISSVVNEFEYEKAFEL 188 (812)
Q Consensus 113 ~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l 188 (812)
|+.+-+ +.+++.|..++... +.+.+...+..| ..+.++.+++..... +...-.+.+...+..|+.+-+.-+
T Consensus 106 g~~~~v----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 106 GNMQTV----KLFVKKNWRLMFYGKTGWKTSFYHAVMLN-DVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp TCHHHH----HHHHHHCGGGGGCSSSGGGSHHHHHHHTT-CHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHH----HHHHhcCCCCCccCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 555433 33444454433221 123344445556 677666666665543 221233344444556665544444
Q ss_pred HH
Q 040319 189 FR 190 (812)
Q Consensus 189 ~~ 190 (812)
++
T Consensus 181 l~ 182 (285)
T 3kea_A 181 LD 182 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 275
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.83 E-value=67 Score=38.64 Aligned_cols=160 Identities=13% Similarity=-0.018 Sum_probs=85.7
Q ss_pred HHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChH
Q 040319 140 LMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLM 219 (812)
Q Consensus 140 li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~ 219 (812)
++..+.+.+ ..+.++++..-.+. +..+--.+..+|...|++++|.+.|++. ..|+.++......+.
T Consensus 818 l~~~l~~~~-~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~~~---------- 883 (1139)
T 4fhn_B 818 LVEKLFLFK-QYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVLR---------- 883 (1139)
T ss_dssp HHHHHHHHS-CTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSSHH----------
T ss_pred HHHHHHHhh-hHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhhhc----------
Confidence 444455556 66667766555443 4333344557788899999999999876 334433322111000
Q ss_pred HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcC----CCCcc----hhHHHHHHHHHhhCChhHHHH
Q 040319 220 EGRAVHAHAIRIG--LGANLSVNNALIGFYTKCGRVKDVVALLERM----PVMDI----ITLTEIIIAYMEFGYVDLAVE 289 (812)
Q Consensus 220 ~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~ 289 (812)
. ...+.... ...-..-|..++..+.+.+..+.+.++-... ...+. ..|..+.+++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 00111100 0111233555666666666666665544322 22211 246777778888888888877
Q ss_pred HhccCCCCCc--ccHHHHHHHHHhCCChHH
Q 040319 290 IFDKMPEKNS--VSYNALLAGYCKNGKAME 317 (812)
Q Consensus 290 ~f~~m~~~d~--~~~~~li~~~~~~g~~~~ 317 (812)
.+-.++.+.. .....|+...+..|..+.
T Consensus 960 aL~~~pd~~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhCCChhh
Confidence 7766654322 345566666666666544
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.66 E-value=11 Score=36.01 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=39.3
Q ss_pred HHHhhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 585 SVLGYWGFLEEAEETINN-MPFQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
..+.+.|.+++|++.+.. ..-.| |...-..|...++..|+.+.|..-++.+.+++|+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 345677777777766554 33445 5556666677777778888888777777777776
No 277
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=58.58 E-value=1.9 Score=23.22 Aligned_cols=13 Identities=46% Similarity=1.252 Sum_probs=10.4
Q ss_pred cccCCcc--CCCCCC
Q 040319 800 HFLNGQC--SCKDYW 812 (812)
Q Consensus 800 ~f~~g~c--sc~~~w 812 (812)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4888888 688877
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=56.10 E-value=1.8e+02 Score=29.91 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=26.2
Q ss_pred HHHHhhhcCCCHHHHHHHHhcCCCCCcch--HHHHHHHHHcCCChhHHHHHH
Q 040319 140 LMGLYGKFSFCLDYLLKLFDELPHKDTVS--WNTVISSVVNEFEYEKAFELF 189 (812)
Q Consensus 140 li~~y~~~g~~~~~a~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~ 189 (812)
.+..-+..| .++.++.+++....++... ..+.+...+..|+.+-+.-++
T Consensus 17 ~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 67 (437)
T 1n11_A 17 PLHVASFMG-HLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67 (437)
T ss_dssp HHHHHHHHT-CHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 344456667 7887777777655443221 123344445556655444443
No 279
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.78 E-value=1.1e+02 Score=27.28 Aligned_cols=50 Identities=18% Similarity=0.016 Sum_probs=24.5
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCC
Q 040319 234 GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGY 283 (812)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~ 283 (812)
.++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.|.
T Consensus 118 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34444555555555555554444444444444454444555555555544
No 280
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=54.83 E-value=1.2e+02 Score=27.34 Aligned_cols=166 Identities=12% Similarity=-0.014 Sum_probs=77.9
Q ss_pred hhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 040319 50 ADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMG 129 (812)
Q Consensus 50 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 129 (812)
+....+...+..+|...-...+..+.+.+.. ++...+..+... +|...-...+.++...++.+....+...+
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l---- 90 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIKAL---- 90 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHHHT----
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHH----
Confidence 3333444444455555545555555555553 233333333332 35555555555555555543332222221
Q ss_pred CCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHH
Q 040319 130 CVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLL 209 (812)
Q Consensus 130 ~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 209 (812)
-.++..+-...+...++.+ ..+....+.+.+..++...-...+.++.+.|+.+ ++..+..+ .. .+|...-...+
T Consensus 91 ~~~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~-l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIG-DERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKA-LK---DEDGWVRQSAA 164 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHH-TT---CSSHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHH-Hc---CCCHHHHHHHH
Confidence 2455556666666666666 5544445555555555555555555555555543 33333333 11 24444444555
Q ss_pred HHHhcCCChHHHHHHHHHHHH
Q 040319 210 TACTGCFVLMEGRAVHAHAIR 230 (812)
Q Consensus 210 ~~~~~~~~~~~a~~~~~~~~~ 230 (812)
.++...+. ..+...+..+.+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHh
Confidence 55555444 233333334433
No 281
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=53.61 E-value=45 Score=28.01 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHH
Q 040319 522 EALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVS 585 (812)
Q Consensus 522 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 585 (812)
+..+-++.+....+-|+.......|.||.+ .+++..|.++|+.++.+ ..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRR--vNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRR--LNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHH--hhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 344556666677788999999999999998 99999999999988764 3344556776664
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.32 E-value=77 Score=29.31 Aligned_cols=55 Identities=9% Similarity=-0.036 Sum_probs=30.1
Q ss_pred HHhHhccCCchHHHHHHHHHHHhccCCCcc--chHHHHHHHHccCChhhHHHHHhcC
Q 040319 5 LRLSVQCGEVSLAKAIHASLIKLLLEQDTR--FGNPLISAYLKLGHVADAYKIFYGL 59 (812)
Q Consensus 5 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~ 59 (812)
|...+..|+.+..+.+.+.+.+.|..++.. ...+.+...+..|+.+-...+++.-
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 444555677776666666665566444322 1233444555566666666655543
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.04 E-value=1e+02 Score=28.42 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=9.2
Q ss_pred HhcCChhHHHHHHHHHHHCCC
Q 040319 75 AKLGREEEAIELFFRMRSEGI 95 (812)
Q Consensus 75 ~~~g~~~~a~~~~~~m~~~g~ 95 (812)
++.|+.+-+..+++.+.+.|.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 344444444444444444443
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.67 E-value=2.2e+02 Score=29.30 Aligned_cols=76 Identities=7% Similarity=-0.021 Sum_probs=41.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHhhhcCCCHHHHHHHHhcCCCCC---cchHHHHHHHHHc
Q 040319 104 AILTACIRLLELELGFQIHALIVKMGCVDSVF--VTNALMGLYGKFSFCLDYLLKLFDELPHKD---TVSWNTVISSVVN 178 (812)
Q Consensus 104 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~ 178 (812)
+.|...+..|+.+..+ .+.+.|..++.. ...+.+...++.| ..+.++.+++.....+ ..-++. +...+.
T Consensus 16 t~L~~Aa~~g~~~~v~----~Ll~~g~~~~~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 89 (437)
T 1n11_A 16 TPLHVASFMGHLPIVK----NLLQRGASPNVSNVKVETPLHMAARAG-HTEVAKYLLQNKAKVNAKAKDDQTP-LHCAAR 89 (437)
T ss_dssp CHHHHHHHHTCHHHHH----HHHHTTCCSCCSSSCCCCHHHHHHHHT-CHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHH
T ss_pred CHHHHHHHCCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHH
Confidence 3455556677776444 445567655432 1223445556678 8888888887655432 222333 333445
Q ss_pred CCChhHH
Q 040319 179 EFEYEKA 185 (812)
Q Consensus 179 ~g~~~~A 185 (812)
.|+.+-+
T Consensus 90 ~g~~~~v 96 (437)
T 1n11_A 90 IGHTNMV 96 (437)
T ss_dssp HTCHHHH
T ss_pred CCCHHHH
Confidence 5655433
No 285
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=50.89 E-value=3.8 Score=34.64 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=28.7
Q ss_pred CCCcEEEE----cccccccchhhHHHHhhhhcceEEEEecCCccccccCCccC
Q 040319 759 AGQPVRIV----KNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFLNGQCS 807 (812)
Q Consensus 759 ~~~~~~~~----~n~~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~cs 807 (812)
....+||+ ++.+||-+| .|+..-..-++.-+||+|+++.|-
T Consensus 43 ~~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 43 ASSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CCcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 34567776 467788777 344444455789999999999874
No 286
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=50.38 E-value=99 Score=28.48 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=6.7
Q ss_pred ccchhhhhHHHHHhhH
Q 040319 345 GLIMEAKLSEQIHGFV 360 (812)
Q Consensus 345 ~~~~~~~~a~~i~~~~ 360 (812)
...++...+.++.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 218 SLNSQVWSALQMSKAL 233 (237)
T ss_dssp CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444433
No 287
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=50.34 E-value=1e+02 Score=28.43 Aligned_cols=145 Identities=16% Similarity=0.119 Sum_probs=67.9
Q ss_pred hHHhHhccCCchHHHHHHHHHHHhccCCCcc--chHHHHHHHHccCChhhHHHHHhcCCC---CChhhHHHHHHHHHhcC
Q 040319 4 SLRLSVQCGEVSLAKAIHASLIKLLLEQDTR--FGNPLISAYLKLGHVADAYKIFYGLSS---PNVVSFTSLISGLAKLG 78 (812)
Q Consensus 4 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 78 (812)
.|...+..|+.+ +...+++.|..++.. ...+.+...++.|+.+-+..+++.-.. ++...++.+ ...+..|
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~ 88 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL-HLAAKKG 88 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH-HHHHHTT
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcC
Confidence 344445556654 444566677655432 223455556677888777777765432 222222222 3334455
Q ss_pred ChhHHHHHHHHHHHCC-CCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHhhhcCCCHH
Q 040319 79 REEEAIELFFRMRSEG-IVPN---EHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVF--VTNALMGLYGKFSFCLD 152 (812)
Q Consensus 79 ~~~~a~~~~~~m~~~g-~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~ 152 (812)
+.+ +++.+.+.| ..++ ..-.+ .+...+..++.+ +.+.+.+.|..++.. ...+.+...++.| ..+
T Consensus 89 ~~~----~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~ 158 (237)
T 3b7b_A 89 HYE----VVQYLLSNGQMDVNCQDDGGWT-PMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSG-CVD 158 (237)
T ss_dssp CHH----HHHHHHTTTCCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHC-CHH
T ss_pred CHH----HHHHHHhCCCCCcccCCCCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCC-CHH
Confidence 543 333444444 2222 11122 233334445544 344455556544321 1112233334456 666
Q ss_pred HHHHHHhcCCC
Q 040319 153 YLLKLFDELPH 163 (812)
Q Consensus 153 ~a~~~f~~~~~ 163 (812)
.++.+++....
T Consensus 159 ~~~~Ll~~g~~ 169 (237)
T 3b7b_A 159 IAEILLAAKCD 169 (237)
T ss_dssp HHHHHHTTTCC
T ss_pred HHHHHHHcCCC
Confidence 66666665443
No 288
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=50.18 E-value=3.7 Score=25.97 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=9.5
Q ss_pred cccccccchhh
Q 040319 767 KNILTCGDCHS 777 (812)
Q Consensus 767 ~n~~~c~~ch~ 777 (812)
-|.|+|.+||.
T Consensus 15 ~~YRvC~~Cgk 25 (44)
T 2lo3_A 15 IQYRVCEKCGK 25 (44)
T ss_dssp CCEEECTTTCC
T ss_pred ccchhhcccCC
Confidence 48999999994
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.08 E-value=1.1e+02 Score=29.48 Aligned_cols=15 Identities=7% Similarity=0.155 Sum_probs=6.5
Q ss_pred HHHHHHHcCCCCCHh
Q 040319 321 LFVKLLEEGLVLTEF 335 (812)
Q Consensus 321 l~~~m~~~g~~p~~~ 335 (812)
+.+.+++.|..|+..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 333344445444443
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.65 E-value=84 Score=28.93 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=8.7
Q ss_pred HHHHHhcCChHHHHHHHh
Q 040319 244 IGFYTKCGRVKDVVALLE 261 (812)
Q Consensus 244 i~~~~~~g~~~~A~~l~~ 261 (812)
+....+.|+.+-+.-+++
T Consensus 214 l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHH
Confidence 334455555555554433
No 291
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=46.91 E-value=6.5 Score=28.19 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.7
Q ss_pred ceEEEEecCCccccccCCccC
Q 040319 787 RREIFLRDASGFHHFLNGQCS 807 (812)
Q Consensus 787 ~r~i~~rd~~~~h~f~~g~cs 807 (812)
...|=+.|..-.|+|+||+-+
T Consensus 7 ~k~v~LkDGstvyiFKDGKMa 27 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVFKDGKMG 27 (74)
T ss_dssp EEEEEBTTSCEEEEETTSCEE
T ss_pred eeeEecCCCcEEEEEcCCcee
Confidence 456778999999999999854
No 292
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=45.37 E-value=2.7e+02 Score=28.48 Aligned_cols=25 Identities=4% Similarity=-0.004 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC
Q 040319 372 EAALLDMLTRCGRMADAEKMFYRWP 396 (812)
Q Consensus 372 ~~~Li~~y~~~g~~~~A~~~f~~~~ 396 (812)
...|...|.+.|+.++..+++....
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4468888888888888888887765
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.33 E-value=1.6e+02 Score=26.92 Aligned_cols=19 Identities=5% Similarity=-0.088 Sum_probs=8.7
Q ss_pred HhhhcCCCHHHHHHHHhcCC
Q 040319 143 LYGKFSFCLDYLLKLFDELP 162 (812)
Q Consensus 143 ~y~~~g~~~~~a~~~f~~~~ 162 (812)
..++.| ..+.++.+++...
T Consensus 48 ~A~~~~-~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 48 WAAINN-RIDLVKYYISKGA 66 (240)
T ss_dssp HHHHTT-CHHHHHHHHHTTC
T ss_pred HHHHhC-CHHHHHHHHHcCC
Confidence 334444 4555554444433
No 294
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.54 E-value=54 Score=34.28 Aligned_cols=93 Identities=10% Similarity=-0.069 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHccCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHH
Q 040319 475 VANSMVSMYFKCCNMSNAIKAFNKMPS------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEK---ASIKPDAITFVLI 545 (812)
Q Consensus 475 ~~~~Li~~y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~t~~~l 545 (812)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-.+|..+...+++..+...+++... .+-.|+...-.-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455678888888888888888877654 2235666777888888898888888887654 3333433221111
Q ss_pred HH--HhcCCCCchHHHHHHHHHHhhh
Q 040319 546 IS--AYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 546 l~--a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
-. .+.. .+++.+|.+.|-....
T Consensus 213 ~~gl~~l~--~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLA--VRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGG--TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hChHHHHHHHHHHHhc
Confidence 11 2334 6788888888776654
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=41.03 E-value=2.3e+02 Score=26.57 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=26.4
Q ss_pred HHHHHHhhhcCCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHcCCChhHH
Q 040319 138 NALMGLYGKFSFCLDYLLKLFDELPHKDTV---SWNTVISSVVNEFEYEKA 185 (812)
Q Consensus 138 ~~li~~y~~~g~~~~~a~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A 185 (812)
+..+...++.| +++..+.+++.....+.. .-.+.+...+..|+.+-+
T Consensus 6 ~~~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v 55 (285)
T 1wdy_A 6 NHLLIKAVQNE-DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55 (285)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred chHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHH
Confidence 44555666777 888888888776544322 112334444556665433
No 296
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=40.65 E-value=4e+02 Score=29.17 Aligned_cols=348 Identities=11% Similarity=0.002 Sum_probs=178.1
Q ss_pred HHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCC-CCCCcchHHHHHHHHhcCC
Q 040319 138 NALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNG-FTVDYFTISTLLTACTGCF 216 (812)
Q Consensus 138 ~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~pd~~t~~~ll~~~~~~~ 216 (812)
+.-+..+++.+ +.......+.. +..+...-.....+....|+..+|....+.+ -..| ..|
T Consensus 76 ~~~l~~l~~~~-~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l-W~~~~~~p---------------- 136 (618)
T 1qsa_A 76 SRFVNELARRE-DWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL-WLTGKSQP---------------- 136 (618)
T ss_dssp HHHHHHHHHTT-CHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HSCSSCCC----------------
T ss_pred HHHHHHHHhCC-CHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-HhCCCCCc----------------
Confidence 34455566666 88888887766 4334444445667788889988888877776 3332 223
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC
Q 040319 217 VLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE 296 (812)
Q Consensus 217 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 296 (812)
+.+..++....+.|.-.+..++.-+ +.....|+...|..+...+..........++..+. +...+....... .
T Consensus 137 --~~c~~l~~~~~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~ 209 (618)
T 1qsa_A 137 --NACDKLFSVWRASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-G 209 (618)
T ss_dssp --THHHHHHHHHHHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-C
T ss_pred --HHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-C
Confidence 3344455555555544444444443 55667788888888888774222222233333222 223333333322 2
Q ss_pred CCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHhH--HHHHHHHhccchhhhhHHHHHhhHHHhcCCCchh
Q 040319 297 KNSVS---YNALLAGYCKNGKAMEALGLFVKLLEEG-LVLTEFT--LTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDC 370 (812)
Q Consensus 297 ~d~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 370 (812)
++... ...-+.-+.+ .+.+.|..+|......+ +.+.... ...+.......+....+...+....... .+..
T Consensus 210 ~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 286 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (618)
T ss_dssp CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChH
Confidence 22221 1112233333 37899999998887654 2222221 1222223344442333333343333322 3333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeH-HHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhc
Q 040319 371 IEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWT-SMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCG 449 (812)
Q Consensus 371 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~ 449 (812)
+..-.+..-.+.|+.+.|...|+.|+....+..-|. =+..++...|+.++|..+|...-. . .+|-.++.+ .
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~-~------~~fYg~lAa-~ 358 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-Q------RGFYPMVAA-Q 358 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-S------CSHHHHHHH-H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc-C------CChHHHHHH-H
Confidence 344445555678999999999999983322122222 233466788999999999988864 1 133333322 1
Q ss_pred CccchHHHHHHHHHHHHhCCCC-ch-----hHHHHHHHHhhhcCCHHHHHHHHccCCC-CChhHHHHHHHHHHhcCChHH
Q 040319 450 TLGFHEMGKQIHSYALKTGFSS-DL-----GVANSMVSMYFKCCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLLHRQGDE 522 (812)
Q Consensus 450 ~~~~~~~a~~~~~~~~~~g~~~-~~-----~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~ 522 (812)
++|..... .. ....+ .. ...-.-+..+...|....|...+..+.. .+......+.......|.+..
T Consensus 359 ~Lg~~~~~-~~------~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~ 431 (618)
T 1qsa_A 359 RIGEEYEL-KI------DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDL 431 (618)
T ss_dssp HTTCCCCC-CC------CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCCCC-CC------CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHH
Confidence 11210000 00 00000 00 0011223456677888888776655432 333333344444456677776
Q ss_pred HHHHHHH
Q 040319 523 ALAVWSS 529 (812)
Q Consensus 523 A~~l~~~ 529 (812)
++....+
T Consensus 432 ~v~~~~~ 438 (618)
T 1qsa_A 432 SVQATIA 438 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 297
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.22 E-value=96 Score=32.33 Aligned_cols=93 Identities=12% Similarity=0.022 Sum_probs=68.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCCc----h
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP---FQP--KVSVWRALLDSCRIRLNTTIGKRVAKHILAME--PQDPA----T 645 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~----~ 645 (812)
...+..+.+.|.+.|++++|.+.+.++. ..+ -...+...+..|...+|...+....+++..+- ..++. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 4567788999999999999999998875 222 24577778888889999999999988886542 12222 2
Q ss_pred HHHHHhhhhhCCCcchHHHHHHHH
Q 040319 646 YILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 646 ~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
...-+-++...++|.+|.+.+-..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHH
Confidence 334455677889999998877665
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.91 E-value=1.7e+02 Score=24.22 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHHHHHhhCChhHHHHHhccCCCCC---cccHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCHh
Q 040319 272 TEIIIAYMEFGYVDLAVEIFDKMPEKN---SVSYNALLAGYCKNGK--AMEALGLFVKLLEEGLVLTEF 335 (812)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 335 (812)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 344555555555555555666665441 1233344444444432 355667777777666544433
No 299
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=37.85 E-value=1.1e+02 Score=30.15 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=31.9
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 604 PFQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 604 ~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
.+.|. ..+..+-++.+.+++|+.-|...+++++++.|.
T Consensus 191 ~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 191 NLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 35663 557778888899999999999999999999885
No 300
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.79 E-value=2e+02 Score=28.63 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=51.7
Q ss_pred HHHHHHHHccCChhhHHHHHhcCCCCCh---hhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCChhh---HHHHHHHH
Q 040319 37 NPLISAYLKLGHVADAYKIFYGLSSPNV---VSFTSLISGLAKLG-REEEAIELFFRMRSEGIVPNEHS---FVAILTAC 109 (812)
Q Consensus 37 ~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~ 109 (812)
..++.-|...|+.++|.+.++++..|.. +....+..++-+.. ..+.+..++..+.+.|+-+.... |..++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 5688889999999999999999987642 22223333332221 23456677888887765444333 22222222
Q ss_pred HhcC-ChHHHHHHHHHHHH
Q 040319 110 IRLL-ELELGFQIHALIVK 127 (812)
Q Consensus 110 ~~~~-~~~~a~~~~~~~~~ 127 (812)
-... |...|...++.++.
T Consensus 95 ~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHG
T ss_pred hHhhcCccchHHHHHHHHH
Confidence 2221 44445555555443
No 301
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.77 E-value=1.3e+02 Score=24.47 Aligned_cols=35 Identities=11% Similarity=0.347 Sum_probs=23.3
Q ss_pred HHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 628 GKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 628 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
|+..+++.+.+..+-+. ..-..|++|.++..+|++
T Consensus 48 GI~eLe~Gl~I~~~~~~---------~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 48 GIGHLLRGISISSKESE---------HTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHSSCCCCTT---------CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCC---------CCChhHHHHHHHHHHHHH
Confidence 55566666666554221 233579999999999964
No 302
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.57 E-value=2.8e+02 Score=26.23 Aligned_cols=247 Identities=8% Similarity=-0.068 Sum_probs=0.0
Q ss_pred HHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH--HcCCCCCHhH
Q 040319 259 LLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLL--EEGLVLTEFT 336 (812)
Q Consensus 259 l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~g~~p~~~t 336 (812)
+++.+..++...-...+.++.+.+..+....+...+..++...-...+.++.+.|....+..-+-.+. ..--.++...
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~v 107 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACV 107 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHH
Q ss_pred HHHHHHHhccch--hhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHH
Q 040319 337 LTSVVNACGLIM--EAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYAR 414 (812)
Q Consensus 337 ~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~ 414 (812)
-...+.+++..+ +......+...+.+.--.++..+-...+.+..+.|+.+....+.+.+. .++ ...-...+.++.+
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~-d~~-~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK-DPN-GDVRNWAAFAINI 185 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHT-CSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc-CCC-HHHHHHHHHHHHh
Q ss_pred cC-ChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHH
Q 040319 415 SG-KPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAI 493 (812)
Q Consensus 415 ~g-~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 493 (812)
.+ ....+...+..+.. .++..+-...+.++++.|+.+...
T Consensus 186 ~~~~~~~~~~~L~~~l~---------------------------------------d~~~~vR~~A~~aL~~~~~~~~~~ 226 (280)
T 1oyz_A 186 NKYDNSDIRDCFVEMLQ---------------------------------------DKNEEVRIEAIIGLSYRKDKRVLS 226 (280)
T ss_dssp HTCCCHHHHHHHHHHTT---------------------------------------CSCHHHHHHHHHHHHHTTCGGGHH
T ss_pred hccCcHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHhCCHhhHH
Q ss_pred HHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 040319 494 KAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY 551 (812)
Q Consensus 494 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 551 (812)
.+...+.+++ .-...+.++.+.|. .+++..+.++.+ -.+|.......+.+..+
T Consensus 227 ~L~~~l~d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~--~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 227 VLCDELKKNT--VYDDIIEAAGELGD-KTLLPVLDTMLY--KFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHHTSSS--CCHHHHHHHHHHCC-GGGHHHHHHHHT--TSSCCHHHHHHHHHHTC
T ss_pred HHHHHhcCcc--HHHHHHHHHHhcCc-hhhhHHHHHHHh--cCCCcHHHHHHHHHhhc
No 303
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.05 E-value=60 Score=30.67 Aligned_cols=91 Identities=9% Similarity=-0.012 Sum_probs=43.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhh-------HHHHHHHHH--hcCChHHHHHHHHHHHHhCC---------C-Cc
Q 040319 73 GLAKLGREEEAIELFFRMRSEGIVPNEHS-------FVAILTACI--RLLELELGFQIHALIVKMGC---------V-DS 133 (812)
Q Consensus 73 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~-~~ 133 (812)
..++.|+.+....+++.+.+.|..++... .+.|..++. +.|..+-++.+++.-...+. . .|
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34456666666666666666555544322 233333332 45666655555544332110 0 00
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCC
Q 040319 134 VFVTNALMGLYGKFSFCLDYLLKLFDELPHKD 165 (812)
Q Consensus 134 ~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~ 165 (812)
.. ..+.+...+..| ..+.++.+++....++
T Consensus 91 ~~-g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~ 120 (260)
T 3jxi_A 91 YR-GQTALHIAIERR-CKHYVELLVEKGADVH 120 (260)
T ss_dssp EE-SBCHHHHHHHTT-CHHHHHHHHHTTCCTT
T ss_pred cC-CCCHHHHHHHcC-CHHHHHHHHhCCCCcC
Confidence 01 112233344556 7777777777655443
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.18 E-value=1.5e+02 Score=25.45 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=33.5
Q ss_pred HHHHHHHHHc--cCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 628 GKRVAKHILA--MEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 628 a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
...+++.+.. +.-.-+..|...+..+...|++.+|.++++.=.+++
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5666666665 345566778888888888888888888888755443
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.18 E-value=1.8e+02 Score=25.65 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=23.4
Q ss_pred hhCChhHHHHHhccC-C---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 040319 280 EFGYVDLAVEIFDKM-P---EKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLT 333 (812)
Q Consensus 280 ~~g~~~~A~~~f~~m-~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 333 (812)
..|+.+-+..+++.- . .+|..-++.+..+.........-.++.+.+.+.|..|+
T Consensus 115 ~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 115 EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 344444444444433 1 13333344444443332223333455555666665554
No 306
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.77 E-value=89 Score=29.42 Aligned_cols=56 Identities=9% Similarity=-0.186 Sum_probs=29.3
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCCcch-------HHHHHHHHh--cCCChHHHHHHHHHHH
Q 040319 173 ISSVVNEFEYEKAFELFRDMKRDNGFTVDYFT-------ISTLLTACT--GCFVLMEGRAVHAHAI 229 (812)
Q Consensus 173 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~ 229 (812)
+...++.|+.+....+++.+ ...|..++... .+.|..|+. ..|+.+-++.+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFL-LTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHH-HHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH-HhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 33445667777766666655 44444444322 233333332 5566666666655543
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.65 E-value=3.2e+02 Score=26.76 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=40.5
Q ss_pred eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCcc--chHHHHHHHHHHHHhCCCCc
Q 040319 405 WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLG--FHEMGKQIHSYALKTGFSSD 472 (812)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~ 472 (812)
.+.++.-|...|+.++|.+.++++.. ....| .+....+..+.-+.+ ..+....++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~-p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV-PHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC-GGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 35678888889999999999998864 22222 233344445555432 24555566666666665443
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.64 E-value=2e+02 Score=25.43 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=11.9
Q ss_pred HHHccCChhhHHHHHhcCC
Q 040319 42 AYLKLGHVADAYKIFYGLS 60 (812)
Q Consensus 42 ~~~~~g~~~~A~~~f~~~~ 60 (812)
..+..|+.+....++..-.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTT
T ss_pred HHHHhccHHHHHHHHHcCC
Confidence 3445677777777776543
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.67 E-value=3.3e+02 Score=26.67 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccc--hhhhhHHHHHhhHHHhcCCCchhHHHHH
Q 040319 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLI--MEAKLSEQIHGFVMKFGLGSNDCIEAAL 375 (812)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~~~~~L 375 (812)
.+.++.-|...|+.++|...++++......| ......+..+.-+. ...+....++..+.+.|+-+.......+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 3456677777777777777777764211111 12233333344332 1244455566666655555544443333
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.39 E-value=2.2e+02 Score=23.64 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=46.6
Q ss_pred hHHHHHHHHccCChhhHHHHHhcCCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCChhhH
Q 040319 36 GNPLISAYLKLGHVADAYKIFYGLSSPNV---VSFTSLISGLAKLGR--EEEAIELFFRMRSEGIVPNEHSF 102 (812)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~ 102 (812)
.+.++.-|...|+.++|.+.++++..|.- +....+..++-+.+. .+.+..++..+...|+-+.....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 35678889899999999999999876632 334445555555542 45678888888888766554443
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.74 E-value=1.3e+02 Score=25.84 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=46.1
Q ss_pred hHHHHHHHHccCChhhHHHHHhcCCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCChhhH
Q 040319 36 GNPLISAYLKLGHVADAYKIFYGLSSPNV---VSFTSLISGLAKLGR--EEEAIELFFRMRSEGIVPNEHSF 102 (812)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~ 102 (812)
.+.++.-|...|+.++|.+.++++..|.- +....+..++-+.+. .+.+..++..+...|+-+.....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 35678889889999999999999876632 334445555555332 45677888888887766554443
No 312
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.10 E-value=2.6e+02 Score=25.20 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=44.3
Q ss_pred cHHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccch-----hhhhHHHHHhhHHHhcCCC
Q 040319 301 SYNALLAGYC---KNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIM-----EAKLSEQIHGFVMKFGLGS 367 (812)
Q Consensus 301 ~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~g~~~ 367 (812)
..--+|+++. +-.+++.|+-++-+|++.| .|....=..++.+.-..| -+..+...++.....|++-
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3444566654 4578999999999999999 777666666666654443 3445555566666666643
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.20 E-value=4.3e+02 Score=26.47 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=39.5
Q ss_pred eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCcc--chHHHHHHHHHHHHhCCCCc
Q 040319 405 WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLG--FHEMGKQIHSYALKTGFSSD 472 (812)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~ 472 (812)
.+.++.=|...|+.++|.+.++++.. ....+ .+....+..+.-+.+ ..+....++..+.+.|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~-p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV-PHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC-TTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC-CcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 46678888889999999999988875 32222 223344444444432 34455556666665554443
No 314
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.77 E-value=2.4e+02 Score=28.08 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC
Q 040319 241 NALIGFYTKCGRVKDVVALLERMPVM 266 (812)
Q Consensus 241 ~~li~~~~~~g~~~~A~~l~~~~~~~ 266 (812)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 45667777778888888877777655
No 315
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.75 E-value=1.9e+02 Score=25.20 Aligned_cols=47 Identities=6% Similarity=0.062 Sum_probs=35.4
Q ss_pred HHHHHHHHHc--cCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 628 GKRVAKHILA--MEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 628 a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
...++..+.. +.-.-+..|...+..|...|++.+|.++++.-.+++-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4456666654 4555677899999999999999999999987655443
No 316
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=29.57 E-value=4.1e+02 Score=29.27 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=15.2
Q ss_pred hHHhHhccCCchHHHHHHHHH
Q 040319 4 SLRLSVQCGEVSLAKAIHASL 24 (812)
Q Consensus 4 ll~~~~~~~~~~~a~~~~~~~ 24 (812)
++--|.+.|..+.|.++....
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~ 178 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVEN 178 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHh
Confidence 455688889999888866543
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.11 E-value=2.7e+02 Score=25.93 Aligned_cols=22 Identities=5% Similarity=-0.081 Sum_probs=13.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 040319 306 LAGYCKNGKAMEALGLFVKLLE 327 (812)
Q Consensus 306 i~~~~~~g~~~~A~~l~~~m~~ 327 (812)
+..+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4556666667777666665543
No 318
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=25.47 E-value=13 Score=27.82 Aligned_cols=14 Identities=29% Similarity=0.835 Sum_probs=11.1
Q ss_pred cccccccchhhHHH
Q 040319 767 KNILTCGDCHSFLK 780 (812)
Q Consensus 767 ~n~~~c~~ch~~~k 780 (812)
|--|||.|||+...
T Consensus 20 kldrVCdDCyNLyR 33 (78)
T 1j0t_A 20 KVVRVCEDCTNIFR 33 (78)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45689999998763
No 319
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=24.84 E-value=4.2e+02 Score=28.24 Aligned_cols=170 Identities=6% Similarity=-0.004 Sum_probs=81.6
Q ss_pred HHHHHHHHccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040319 489 MSNAIKAFNKMPS-HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSM 567 (812)
Q Consensus 489 ~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m 567 (812)
+.+|.++|.++.. -+.........-|...+.++.|+++.-..-+. ..|....+...-.++-. . + .+.+.|+.=
T Consensus 51 L~eAl~Lf~~va~~l~l~~L~~~c~~~~~l~~y~GaVeL~L~~A~~-~Dp~~~Al~~~~~g~p~--~-D--~~~~~f~~R 124 (525)
T 3i5p_A 51 LKNATALLEQIVDDLSIEKLKEAVSMMLSVNYYPKSIEFLLNIANS-MDKGKLACQYVANGFLE--N-D--DRKQYYDKR 124 (525)
T ss_dssp HHHHHC----------CHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-HHCSSHHHHHHHHTCSS--S-S--SCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-hCCcccHHHHHhCCCCC--c-C--HHHHHHHHH
Confidence 4566677766543 22223344466677777888877776554433 46666665555554432 1 1 111222111
Q ss_pred hhhcCccCCcchHHHHHHHHhhcC-------------Ch----HHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHH
Q 040319 568 KTIYNIEPTSEHYASLVSVLGYWG-------------FL----EEAEETINN----MPFQPKVSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 568 ~~~~~~~p~~~~y~~li~~l~~~g-------------~~----~~A~~~~~~----m~~~p~~~~~~~ll~~~~~~~~~~ 626 (812)
...|..+.+++.+.. .. ++|.+..++ +.-.+|......|-.-+..+|..+
T Consensus 125 ---------~~cY~~I~~~L~~ld~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~DelFH~~LYdWli~~gl~d 195 (525)
T 3i5p_A 125 ---------ILVYDLVFDTLIKVDELAEKKQSSKTQNQISISNDDEVKLRQKSYEAALKYNDRLFHYHMYDWLVSQNREE 195 (525)
T ss_dssp ---------HHHHHHHHHHHHHTC------------------------CCSTTHHHHSSSCCHHHHHHHHHHHHHTTCGG
T ss_pred ---------HHHHHHHHHHHHHHHHHhhccCCCCCCccccccchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcc
Confidence 112333322222210 00 112222112 123456666666666666666544
Q ss_pred HHHHH----H-HHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 627 IGKRV----A-KHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 627 ~a~~~----~-~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
+-..+ . .-+.+..|++.....+|-..|.+.|++-+|.++...+-..+
T Consensus 196 ~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 196 KLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp GGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred hhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 33221 1 11222456677788889999999999999999999987763
No 320
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=24.37 E-value=22 Score=27.46 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=15.8
Q ss_pred hcCCCCCCcEEEEcccccccchhhHHHH
Q 040319 754 LLTTPAGQPVRIVKNILTCGDCHSFLKY 781 (812)
Q Consensus 754 ~~~~~~~~~~~~~~n~~~c~~ch~~~k~ 781 (812)
+|..|-..| -|.|||.+|+--+++
T Consensus 64 ii~~~Ld~~----~~YRvCn~CGkPI~l 87 (96)
T 3mhs_E 64 LIEDPLDKP----IQYRVCEKCGKPLAL 87 (96)
T ss_dssp CCSSTTSSS----CCCEEETTTCCEECG
T ss_pred hhcccCCCc----ccchhhhccCCceeH
Confidence 344444444 689999999965543
No 321
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.17 E-value=2.2e+02 Score=26.78 Aligned_cols=59 Identities=10% Similarity=-0.072 Sum_probs=30.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCC-------CcchHHHHHHHHh--cCCChHHHHHHHHHH
Q 040319 168 SWNTVISSVVNEFEYEKAFELFRDMKRDNGFTV-------DYFTISTLLTACT--GCFVLMEGRAVHAHA 228 (812)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-------d~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 228 (812)
-++.|.. .++.|+.+.+..+++.. ...+... |..-.+.|..++. +.|+.+-++.+++.-
T Consensus 13 g~t~L~~-A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 13 DRRSIFD-AVAQSNCQELESLLPFL-QRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp CHHHHHH-HHHTTCSSTTTTHHHHH-HHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred cchHHHH-HHHcCCHHHHHHHHHHH-hhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3344333 45667777776676655 3333222 2333444444443 346666666665553
No 322
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.12 E-value=1.7e+02 Score=27.60 Aligned_cols=18 Identities=6% Similarity=-0.058 Sum_probs=10.6
Q ss_pred hhcCCCHHHHHHHHhcCCC
Q 040319 145 GKFSFCLDYLLKLFDELPH 163 (812)
Q Consensus 145 ~~~g~~~~~a~~~f~~~~~ 163 (812)
++.| ..+.++.+++....
T Consensus 109 ~~~g-~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 109 IERR-NMTLVTLLVENGAD 126 (273)
T ss_dssp HHTT-CHHHHHHHHHTTCC
T ss_pred HHcC-CHHHHHHHHHCCCC
Confidence 4455 66666666665443
No 323
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.68 E-value=4.1e+02 Score=23.99 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=34.6
Q ss_pred HHHHH---HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCch
Q 040319 510 LIAGH---LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNL 556 (812)
Q Consensus 510 li~~~---~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~ 556 (812)
+|+++ .+..+++.|+-.+-+|++.| .|..+.=..++.|... .|+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED--IGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED--IGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT--TGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh--ccC
Confidence 45555 35789999999999999999 8887877777778777 553
No 324
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.24 E-value=2.2e+02 Score=26.49 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=42.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhc---CChHHHHHHHHHHHHhCCCC----------
Q 040319 73 GLAKLGREEEAIELFFRMRSEGIVPNE-------HSFVAILTACIRL---LELELGFQIHALIVKMGCVD---------- 132 (812)
Q Consensus 73 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~---------- 132 (812)
..++.|+.+.+..+++.+...|..++. .-.+.|..+ +.. |+.+-++.+++.-...+...
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 86 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDE 86 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCST
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhcccccccc
Confidence 345566666665666666555554433 222333333 333 56655555554433322100
Q ss_pred chHHHHHHHHHhhhcCCCHHHHHHHHhcCCCC
Q 040319 133 SVFVTNALMGLYGKFSFCLDYLLKLFDELPHK 164 (812)
Q Consensus 133 ~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~ 164 (812)
|.. ..+-+...+..| ..+.++.+++....+
T Consensus 87 d~~-g~t~L~~A~~~g-~~~~v~~Ll~~ga~~ 116 (256)
T 2etb_A 87 FYQ-GHSALHIAIEKR-SLQCVKLLVENGADV 116 (256)
T ss_dssp TTT-TCCHHHHHHHTT-CHHHHHHHHHTTCCT
T ss_pred ccc-CCCHHHHHHHcC-CHHHHHHHHHcCCCC
Confidence 111 222333445566 777777777765543
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.78 E-value=2.7e+02 Score=27.66 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=9.1
Q ss_pred HHHhcCChHHHHHHHhc
Q 040319 246 FYTKCGRVKDVVALLER 262 (812)
Q Consensus 246 ~~~~~g~~~~A~~l~~~ 262 (812)
..++.|..+-+.-+++.
T Consensus 250 ~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 250 LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHTCCHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHc
Confidence 33445666555555554
No 326
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.64 E-value=2.6e+02 Score=25.14 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=33.2
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccch
Q 040319 304 ALLAGYC---KNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIM 348 (812)
Q Consensus 304 ~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 348 (812)
-+|+++. +..+++.|+-++-+|++.|-.|....=..++-+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455554 45789999999999999998887777666666654433
No 327
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.49 E-value=3.6e+02 Score=24.58 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=45.6
Q ss_pred CcccHHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccch-----hhhhHHHHHhhHHHhcCC
Q 040319 298 NSVSYNALLAGYC---KNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIM-----EAKLSEQIHGFVMKFGLG 366 (812)
Q Consensus 298 d~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~g~~ 366 (812)
+-...--+|+++. +-.+++.|+-++-+|++.|-.|....=..++-+.-..| -+..+...+......|++
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3344455666664 45789999999999999998888777777777654433 344455555555555654
No 328
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.44 E-value=3e+02 Score=25.70 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=16.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 040319 70 LISGLAKLGREEEAIELFFRMRS 92 (812)
Q Consensus 70 li~~~~~~g~~~~a~~~~~~m~~ 92 (812)
-+..+....++++|..+.++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46677788888888888776554
No 329
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=21.98 E-value=3.2e+02 Score=24.76 Aligned_cols=46 Identities=7% Similarity=-0.008 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhCCCC-chhHHHHHHHHhhhcCCHHHHHHHHccC
Q 040319 454 HEMGKQIHSYALKTGFSS-DLGVANSMVSMYFKCCNMSNAIKAFNKM 499 (812)
Q Consensus 454 ~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 499 (812)
......++..|...|+.. -...|......+...|++.+|..+|+.-
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445566666666665543 3445566666666666666666666543
No 330
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.59 E-value=2.9e+02 Score=27.44 Aligned_cols=18 Identities=0% Similarity=-0.092 Sum_probs=9.4
Q ss_pred HHHHhcCChHHHHHHHhc
Q 040319 245 GFYTKCGRVKDVVALLER 262 (812)
Q Consensus 245 ~~~~~~g~~~~A~~l~~~ 262 (812)
...+..|+.+-+..+++.
T Consensus 178 ~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 334455666655555543
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.36 E-value=2e+02 Score=22.42 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=26.2
Q ss_pred CChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 040319 47 GHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEA 83 (812)
Q Consensus 47 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a 83 (812)
...+.|+++++.++.+....|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777888887777777777788777666655444
No 332
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.01 E-value=1.4e+02 Score=25.70 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhCChhHHHHHhccCCCC
Q 040319 271 LTEIIIAYMEFGYVDLAVEIFDKMPEK 297 (812)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~f~~m~~~ 297 (812)
.+.++.-|...|+.++|.+.++++..|
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 445566666666666666666666544
No 333
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.69 E-value=1.5e+02 Score=31.47 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=22.6
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
+-....+.|...|.++..+.|++...|..|+-+....|+.-+|
T Consensus 163 RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a 205 (497)
T 1ya0_A 163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205 (497)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHH
Confidence 3334445555555555555555555555555555555544443
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.66 E-value=1e+02 Score=24.07 Aligned_cols=39 Identities=18% Similarity=0.024 Sum_probs=31.8
Q ss_pred CHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHH
Q 040319 150 CLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFEL 188 (812)
Q Consensus 150 ~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 188 (812)
..+.|+++++.++.+...+|..++.++...|+..-|..+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 688899999999999999999999999877776555433
No 335
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.66 E-value=1.1e+02 Score=16.43 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 040319 702 EKDIYSGLEILILECLK 718 (812)
Q Consensus 702 ~~~i~~~l~~l~~~~~~ 718 (812)
..++|.+++.|.+++++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35778888888777764
No 336
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.20 E-value=1.8e+02 Score=24.39 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=6.3
Q ss_pred hcCChHHHHHHHhc
Q 040319 249 KCGRVKDVVALLER 262 (812)
Q Consensus 249 ~~g~~~~A~~l~~~ 262 (812)
+.|+.+-+.-+++.
T Consensus 110 ~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 110 QEGHTAVVSFLAAE 123 (156)
T ss_dssp HHTCHHHHHHHHTT
T ss_pred HhChHHHHHHHHhc
Confidence 34444444444443
Done!