Query 040322
Match_columns 200
No_of_seqs 122 out of 722
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:18:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1221 Acyl-CoA reductase [Li 100.0 6.6E-41 1.4E-45 296.8 13.7 167 12-196 267-435 (467)
2 PLN02996 fatty acyl-CoA reduct 100.0 1.5E-34 3.3E-39 261.7 15.9 177 12-195 295-472 (491)
3 PLN02503 fatty acyl-CoA reduct 100.0 4.1E-31 9E-36 243.0 12.4 167 12-196 409-584 (605)
4 PF03015 Sterile: Male sterili 99.8 1.2E-20 2.7E-25 135.1 3.2 75 107-195 1-75 (94)
5 cd09071 FAR_C C-terminal domai 99.8 5.4E-19 1.2E-23 125.8 3.6 74 108-195 2-75 (92)
6 PRK07201 short chain dehydroge 93.9 0.2 4.3E-06 46.9 7.3 55 16-75 214-268 (657)
7 PRK10217 dTDP-glucose 4,6-dehy 86.6 2.1 4.5E-05 36.8 6.3 58 13-76 215-272 (355)
8 TIGR01746 Thioester-redct thio 85.5 2 4.4E-05 36.4 5.6 50 20-72 228-277 (367)
9 TIGR01181 dTDP_gluc_dehyt dTDP 84.9 2.5 5.5E-05 35.1 5.9 58 13-76 205-262 (317)
10 PLN02427 UDP-apiose/xylose syn 84.0 2.9 6.2E-05 36.6 6.0 61 13-76 248-308 (386)
11 TIGR02197 heptose_epim ADP-L-g 83.2 2.5 5.5E-05 35.3 5.2 54 16-76 208-261 (314)
12 PF06956 RtcR: Regulator of RN 83.1 11 0.00023 30.1 8.1 69 46-118 67-138 (183)
13 PRK10084 dTDP-glucose 4,6 dehy 82.5 3.3 7.3E-05 35.4 5.7 58 13-76 222-279 (352)
14 TIGR02622 CDP_4_6_dhtase CDP-g 80.5 6.6 0.00014 33.8 6.9 61 15-75 216-277 (349)
15 PRK11908 NAD-dependent epimera 80.1 5.5 0.00012 34.2 6.3 63 14-78 213-275 (347)
16 PRK11150 rfaD ADP-L-glycero-D- 79.3 4.5 9.7E-05 34.0 5.3 55 14-75 201-255 (308)
17 TIGR03443 alpha_am_amid L-amin 76.8 5.4 0.00012 40.8 6.0 54 17-73 1209-1262(1389)
18 TIGR01472 gmd GDP-mannose 4,6- 75.0 7.9 0.00017 33.1 5.8 56 13-75 215-270 (343)
19 PLN02260 probable rhamnose bio 73.7 8.7 0.00019 36.4 6.1 58 13-76 214-271 (668)
20 TIGR01777 yfcH conserved hypot 73.4 8.8 0.00019 31.5 5.5 55 15-75 188-242 (292)
21 TIGR01179 galE UDP-glucose-4-e 72.7 8.6 0.00019 32.0 5.3 56 17-75 221-276 (328)
22 TIGR01214 rmlD dTDP-4-dehydror 71.6 14 0.00031 30.3 6.4 53 19-76 178-230 (287)
23 PLN02725 GDP-4-keto-6-deoxyman 70.1 11 0.00023 31.3 5.3 55 15-75 196-250 (306)
24 PRK15181 Vi polysaccharide bio 69.6 12 0.00026 32.2 5.6 60 13-75 224-283 (348)
25 PLN02206 UDP-glucuronate decar 68.1 14 0.00029 33.5 5.8 56 13-75 319-374 (442)
26 PLN02240 UDP-glucose 4-epimera 67.7 13 0.00029 31.6 5.5 57 17-75 233-290 (352)
27 PLN00016 RNA-binding protein; 63.8 16 0.00034 31.9 5.3 58 13-75 235-292 (378)
28 PF04321 RmlD_sub_bind: RmlD s 63.1 23 0.00049 29.8 6.0 65 12-78 171-235 (286)
29 PRK10675 UDP-galactose-4-epime 62.6 18 0.00039 30.6 5.4 56 17-75 226-281 (338)
30 PLN02653 GDP-mannose 4,6-dehyd 59.6 28 0.0006 29.7 6.0 56 13-75 221-276 (340)
31 CHL00194 ycf39 Ycf39; Provisio 53.5 41 0.00089 28.4 6.0 55 16-75 168-222 (317)
32 PLN02166 dTDP-glucose 4,6-dehy 53.4 35 0.00075 30.8 5.8 56 13-75 320-375 (436)
33 PLN02572 UDP-sulfoquinovose sy 53.2 32 0.0007 31.0 5.5 57 13-73 300-356 (442)
34 PLN02695 GDP-D-mannose-3',5'-e 49.4 38 0.00082 29.6 5.3 57 12-75 226-282 (370)
35 PLN02778 3,5-epimerase/4-reduc 44.8 54 0.0012 27.6 5.4 46 23-75 193-238 (298)
36 PRK08125 bifunctional UDP-gluc 43.2 61 0.0013 30.8 5.9 62 13-76 526-587 (660)
37 COG4650 RtcR Sigma54-dependent 42.8 1.1E+02 0.0024 26.9 6.8 69 46-118 68-139 (531)
38 PTZ00374 dihydroxyacetone phos 42.3 45 0.00099 33.6 4.9 66 12-77 246-317 (1108)
39 PLN02989 cinnamyl-alcohol dehy 40.4 57 0.0012 27.4 4.9 47 22-75 225-271 (325)
40 COG0451 WcaG Nucleoside-diphos 38.6 87 0.0019 25.7 5.7 59 13-77 201-259 (314)
41 PRK09987 dTDP-4-dehydrorhamnos 37.5 1.4E+02 0.003 25.0 6.7 42 27-74 193-234 (299)
42 PLN02662 cinnamyl-alcohol dehy 36.7 1E+02 0.0022 25.7 5.8 51 18-75 219-269 (322)
43 PF04244 DPRP: Deoxyribodipyri 36.3 19 0.0004 29.7 1.2 52 133-190 142-198 (224)
44 KOG0747 Putative NAD+-dependen 32.4 91 0.002 27.0 4.7 59 12-76 211-269 (331)
45 PLN02214 cinnamoyl-CoA reducta 30.7 1.2E+02 0.0026 25.9 5.4 49 20-75 221-269 (342)
46 PLN00198 anthocyanidin reducta 29.7 1E+02 0.0023 26.0 4.8 46 22-74 238-283 (338)
47 PF01073 3Beta_HSD: 3-beta hyd 29.1 2.7E+02 0.0058 23.3 7.1 60 12-73 203-267 (280)
48 PLN02986 cinnamyl-alcohol dehy 28.6 1.1E+02 0.0024 25.6 4.8 48 21-75 223-270 (322)
49 COG1448 TyrB Aspartate/tyrosin 25.2 1.4E+02 0.0031 26.7 4.8 38 31-72 159-203 (396)
50 PRK05865 hypothetical protein; 22.9 1.4E+02 0.0031 29.6 4.8 52 16-72 149-200 (854)
51 COG1090 Predicted nucleoside-d 21.4 1.4E+02 0.0031 25.7 3.9 54 16-75 187-240 (297)
52 PLN02657 3,8-divinyl protochlo 21.1 2.9E+02 0.0062 24.3 6.1 59 14-76 239-298 (390)
No 1
>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]
Probab=100.00 E-value=6.6e-41 Score=296.77 Aligned_cols=167 Identities=30% Similarity=0.309 Sum_probs=160.0
Q ss_pred eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCC--CceEEEeecCCCCcccHHHHHHHHHHHhhcCCCCCCCCCceee
Q 040322 12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSS--YVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKV 89 (200)
Q Consensus 12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~--~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~~~~~g~~~~~ 89 (200)
+++.+|++.++|+||||+|||+||+++|.++.+.+ +++|||++||..||+||+++.+.+..++.++|+++. +|+
T Consensus 267 r~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~~e~~~~~~~~~Pl~~~----iw~ 342 (467)
T KOG1221|consen 267 RCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDFIELALRYFEKIPLEKM----IWY 342 (467)
T ss_pred EEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHHHHHHHHhcccCCcccc----eec
Confidence 89999999999999999999999999999987644 489999999999999999999999999999999998 999
Q ss_pred eeeEEecChhHHHHHHHHHhhchhhhhccccccchhhHhhhhhhhhhhHHHHHHHHhhHHHHHHhccCcccceEEEeChh
Q 040322 90 TKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRN 169 (200)
Q Consensus 90 p~~~~~~~~~~~~~~~~l~~~lPa~l~D~~~~~~~~~~~~~~~~~~~~~~k~~rki~~~~~~~~~~~~Ft~~~w~F~~~N 169 (200)
|...+++|.+.|.++.+++|.+||+++|+ ++ +..|++|.+.+.++|+. ++.++|+||+.++|+|+++|
T Consensus 343 P~~~~~sn~~~f~~~~~~~h~lPa~~~d~-------~~--~i~g~k~~~~k~~~ki~---~~~~~l~~f~~~~w~Fd~~n 410 (467)
T KOG1221|consen 343 PFGTLTSNPWLFNLAAFLYHTLPAYILDL-------LL--RLLGKKPRLVKLYRKIH---KLVKLLEPFSLFKWIFDNKN 410 (467)
T ss_pred cCceeeecHhHHHHHHHHHHHhhHHHHHH-------HH--HHhCCChhhhHHHHHHH---HHHHhhhhheeceEEecCcc
Confidence 99999999999999999999999999999 87 66699999999999999 99999999999999999999
Q ss_pred HHHHHHHcCcCcccccceecccccccc
Q 040322 170 TEKLRMATRENMMETDIFSFILSALIG 196 (200)
Q Consensus 170 ~~~L~~~m~~~~~dr~~F~fD~~~i~~ 196 (200)
+.+|++.|++ +|+++|+||++.++-
T Consensus 411 ~~~L~~~~~~--~d~~~f~fd~~~ldW 435 (467)
T KOG1221|consen 411 TEKLREKMSE--EDKRLFNFDMKQLDW 435 (467)
T ss_pred HHHHHHhCCH--HHHhhcCCCcccCCH
Confidence 9999999999 999999999999874
No 2
>PLN02996 fatty acyl-CoA reductase
Probab=100.00 E-value=1.5e-34 Score=261.68 Aligned_cols=177 Identities=46% Similarity=0.715 Sum_probs=160.4
Q ss_pred eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcCCCCCCCCCceeeee
Q 040322 12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTK 91 (200)
Q Consensus 12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~~~~~g~~~~~p~ 91 (200)
+.++||++.+.|+||||.||||+++++|..........|||++||..||++|+++.+.+.+++.++|+.+.+|+++|+|.
T Consensus 295 ~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~~~~~~~~~~~p~ 374 (491)
T PLN02996 295 TCFLADPNSVLDVIPADMVVNAMIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPWINKEGSPVKVGK 374 (491)
T ss_pred eEEecCCCeecceecccHHHHHHHHHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCCcCCCCCeEeeCC
Confidence 57899999999999999999999999997432222357999999999999999999999999999999988889999999
Q ss_pred eEEecChhHHHHHHHHHhhchhhhhccccccchhhHhhhhhhhhhhHHHHHHHHhhHHHHHHhccCcccceEEEeChhHH
Q 040322 92 VIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTE 171 (200)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~lPa~l~D~~~~~~~~~~~~~~~~~~~~~~k~~rki~~~~~~~~~~~~Ft~~~w~F~~~N~~ 171 (200)
+.++++.+.|+++.++.|.+|++++|+ +..+.+.+++|++.+++||++++.+++++|+|||+++|+|+|+|++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~lp~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~ 447 (491)
T PLN02996 375 GTILSTMASFSLYMTIRYLLPLKALQL-------VNIILPKRYGDKYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTE 447 (491)
T ss_pred ceecCcHHHHHHHHHHHHHhHHHHHHH-------HHHHhhhccChHHHHHHHHHHHHHHHHHHhhccccceEEEccHHHH
Confidence 999999999999999999999999999 7744466789999999999977778899999999999999999999
Q ss_pred HHHHHcCcCc-ccccceeccccccc
Q 040322 172 KLRMATRENM-METDIFSFILSALI 195 (200)
Q Consensus 172 ~L~~~m~~~~-~dr~~F~fD~~~i~ 195 (200)
+|++.|++.| +||++|+||++.|+
T Consensus 448 ~l~~~~~~~d~~d~~~f~~d~~~~~ 472 (491)
T PLN02996 448 KLRIKRKETGKEEADMFDFDPKSID 472 (491)
T ss_pred HHHHHCCccccccccEeccCcccCC
Confidence 9999999955 56999999999886
No 3
>PLN02503 fatty acyl-CoA reductase 2
Probab=99.97 E-value=4.1e-31 Score=243.03 Aligned_cols=167 Identities=25% Similarity=0.365 Sum_probs=133.7
Q ss_pred eeeeecCCcccccchHHHHHHHHHHHHHHhhhc-CCCceEEEeecCCCCcccHHHHHHHHHHHhhcCCCCCCCCCceeee
Q 040322 12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQ-SSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVT 90 (200)
Q Consensus 12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~-~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~~~~~g~~~~~p 90 (200)
++++||++.++|+||||+||||+|+++|.+... ..+.+||||+||..||++|+++.+.+.+++.++|+.+..|.++|.|
T Consensus 409 r~~~~~~~~~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~P~~~~~~~~~~~~ 488 (605)
T PLN02503 409 TGFLADPNGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSSPYMDSKGRPIHVP 488 (605)
T ss_pred eEEEeCCCeeEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhCCcccccCcceecc
Confidence 679999999999999999999999997765432 2357899999999999999999999999999999999855555555
Q ss_pred eeEEecChhHHHHHHHHHhhchhhhhccccccchhhHhhh---hhhhhhhHHHHHHH-----HhhHHHHHHhccCcccce
Q 040322 91 KVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLC---CQYFEGMLTGRRRK-----TNFVMPLVEIYGPHLLSN 162 (200)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~lPa~l~D~~~~~~~~~~~~~---~~~~~~~~~k~~rk-----i~~~~~~~~~~~~Ft~~~ 162 (200)
...+. +.+..++.|. +.|. ++... ..++++++.+.+++ +.++.+++++|+|||+++
T Consensus 489 ~~~~~-----~~~~~~~~h~----~~d~-------~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ft~~~ 552 (605)
T PLN02503 489 PMKLF-----SSMEDFSSHL----WRDA-------LLRSGLAGMSSSDRKLSQKLENICAKSVEQAKYLASIYEPYTFYG 552 (605)
T ss_pred Cceeh-----hhHHHHHHHH----HHHH-------HHHHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHhhheeCe
Confidence 55544 4444444553 4666 44221 11366777776654 445668999999999999
Q ss_pred EEEeChhHHHHHHHcCcCcccccceecccccccc
Q 040322 163 ATFDDRNTEKLRMATRENMMETDIFSFILSALIG 196 (200)
Q Consensus 163 w~F~~~N~~~L~~~m~~~~~dr~~F~fD~~~i~~ 196 (200)
|+|+|+|+++|++.|+| +||++|+||++.|+-
T Consensus 553 w~F~~~n~~~L~~~ms~--~Dr~~F~~D~~~idW 584 (605)
T PLN02503 553 GRFDNSNTQRLMERMSE--EEKAEFGFDVGSIDW 584 (605)
T ss_pred EEEechHHHHHHHhCCH--HHhhccCCCcCCCCH
Confidence 99999999999999999 999999999999863
No 4
>PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms. The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process
Probab=99.81 E-value=1.2e-20 Score=135.10 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=71.3
Q ss_pred HHhhchhhhhccccccchhhHhhhhhhhhhhHHHHHHHHhhHHHHHHhccCcccceEEEeChhHHHHHHHcCcCcccccc
Q 040322 107 IQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDI 186 (200)
Q Consensus 107 l~~~lPa~l~D~~~~~~~~~~~~~~~~~~~~~~k~~rki~~~~~~~~~~~~Ft~~~w~F~~~N~~~L~~~m~~~~~dr~~ 186 (200)
++|.+||.++|+ ++ ++.|++|++.++++|++ +++++++||++++|+|+|+|+++|++.|+| +|+++
T Consensus 1 ~~h~lPA~~~D~-------~~--~l~g~kp~~~k~~~ki~---~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~--~D~~~ 66 (94)
T PF03015_consen 1 LFHFLPAYLLDL-------IL--RLFGQKPRMVKIYRKIR---KALEVLEYFTTNEWIFDNDNTRRLWERLSP--EDREI 66 (94)
T ss_pred CcchHHHHHHHH-------HH--HHhCCChHHHHHHHHHH---HHHHHHHHHHhCceeecchHHHHHHHhCch--hcCce
Confidence 358999999999 88 77899999999999999 999999999999999999999999999999 99999
Q ss_pred eeccccccc
Q 040322 187 FSFILSALI 195 (200)
Q Consensus 187 F~fD~~~i~ 195 (200)
|+||+++|+
T Consensus 67 F~fD~~~id 75 (94)
T PF03015_consen 67 FNFDIRSID 75 (94)
T ss_pred ecCCCCCCC
Confidence 999999886
No 5
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=99.75 E-value=5.4e-19 Score=125.78 Aligned_cols=74 Identities=22% Similarity=0.196 Sum_probs=70.0
Q ss_pred HhhchhhhhccccccchhhHhhhhhhhhhhHHHHHHHHhhHHHHHHhccCcccceEEEeChhHHHHHHHcCcCcccccce
Q 040322 108 QYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIF 187 (200)
Q Consensus 108 ~~~lPa~l~D~~~~~~~~~~~~~~~~~~~~~~k~~rki~~~~~~~~~~~~Ft~~~w~F~~~N~~~L~~~m~~~~~dr~~F 187 (200)
.|.+||.++|. +. ...|++|++.++++|+. +++++++||++++|+|+++|+++|++.|+| +||++|
T Consensus 2 ~~~lpa~~~d~-------~~--~l~g~~~~~~~~~~k~~---~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~--~Dr~~F 67 (92)
T cd09071 2 LHLLPAYLLDL-------LL--RLLGRKPRLLKLYRKIH---KLLDLLEYFTTNEWRFDNDNTRALWERLSE--EDRELF 67 (92)
T ss_pred cccchHHHHHH-------HH--HHhCCChHHHHHHHHHH---HHHHHhhccccCeEEeeCcHHHHHHHHCCH--HHHHhC
Confidence 47899999999 77 66699999999999999 999999999999999999999999999999 999999
Q ss_pred eccccccc
Q 040322 188 SFILSALI 195 (200)
Q Consensus 188 ~fD~~~i~ 195 (200)
+||+++|+
T Consensus 68 ~fD~~~id 75 (92)
T cd09071 68 NFDIRSID 75 (92)
T ss_pred CCCCCCCC
Confidence 99999886
No 6
>PRK07201 short chain dehydrogenase; Provisional
Probab=93.91 E-value=0.2 Score=46.94 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=41.2
Q ss_pred ecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 16 RDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 16 ~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
++.....++||||.|+++++.++-. . .....+||++++ .+++|.++.+.+.+...
T Consensus 214 ~~~~~~~~~v~vddva~ai~~~~~~--~-~~~g~~~ni~~~--~~~s~~el~~~i~~~~g 268 (657)
T PRK07201 214 GPDGGRTNIVPVDYVADALDHLMHK--D-GRDGQTFHLTDP--KPQRVGDIYNAFARAAG 268 (657)
T ss_pred cCCCCeeeeeeHHHHHHHHHHHhcC--c-CCCCCEEEeCCC--CCCcHHHHHHHHHHHhC
Confidence 4455677999999999998766531 1 123469999875 57999999999888754
No 7
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=86.56 E-value=2.1 Score=36.78 Aligned_cols=58 Identities=10% Similarity=0.205 Sum_probs=45.7
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~ 76 (200)
.++++.+..-|+|-||-++.+++.++-. . ....+||++|+ +++++.++.+.+.+...+
T Consensus 215 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~--~--~~~~~yni~~~--~~~s~~~~~~~i~~~~~~ 272 (355)
T PRK10217 215 PVYGNGQQIRDWLYVEDHARALYCVATT--G--KVGETYNIGGH--NERKNLDVVETICELLEE 272 (355)
T ss_pred eEeCCCCeeeCcCcHHHHHHHHHHHHhc--C--CCCCeEEeCCC--CcccHHHHHHHHHHHhcc
Confidence 3568888899999999999998776532 1 22469999996 589999999988887654
No 8
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=85.53 E-value=2 Score=36.40 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=36.9
Q ss_pred cccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHH
Q 040322 20 TVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFD 72 (200)
Q Consensus 20 ~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~ 72 (200)
...|.+|||.|+.+++.++... .......+||++++ ++++|.++.+.+.+
T Consensus 228 ~~~~~~~vddva~ai~~~~~~~-~~~~~~~~~~v~~~--~~~s~~e~~~~i~~ 277 (367)
T TIGR01746 228 LTEDLTPVDYVARAIVALSSQP-AASAGGPVFHVVNP--EPVSLDEFLEWLER 277 (367)
T ss_pred cccCcccHHHHHHHHHHHHhCC-CcccCCceEEecCC--CCCCHHHHHHHHHH
Confidence 3678999999999987665422 11011469999874 68999999998876
No 9
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=84.93 E-value=2.5 Score=35.11 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=44.1
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~ 76 (200)
.+.++.+...|.|.||-++.++..+.-. .....+||++++ .++++.++.+.+.+.+..
T Consensus 205 ~~~~~g~~~~~~i~v~D~a~~~~~~~~~----~~~~~~~~~~~~--~~~s~~~~~~~i~~~~~~ 262 (317)
T TIGR01181 205 PVYGDGQQVRDWLYVEDHCRAIYLVLEK----GRVGETYNIGGG--NERTNLEVVETILELLGK 262 (317)
T ss_pred eEeCCCceEEeeEEHHHHHHHHHHHHcC----CCCCceEEeCCC--CceeHHHHHHHHHHHhCC
Confidence 3456777888999999999997666531 122369999885 579999999999987643
No 10
>PLN02427 UDP-apiose/xylose synthase
Probab=83.96 E-value=2.9 Score=36.58 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=44.5
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~ 76 (200)
.+.++.+...|+|-||-|+++++.++-... .....+||++++. .++++.++.+.+.+.+..
T Consensus 248 ~~~g~g~~~r~~i~V~Dva~ai~~al~~~~--~~~g~~yni~~~~-~~~s~~el~~~i~~~~g~ 308 (386)
T PLN02427 248 KLVDGGQSQRTFVYIKDAIEAVLLMIENPA--RANGHIFNVGNPN-NEVTVRQLAEMMTEVYAK 308 (386)
T ss_pred EEECCCCceECcEeHHHHHHHHHHHHhCcc--cccCceEEeCCCC-CCccHHHHHHHHHHHhcc
Confidence 345666777899999999999887653211 1124699998752 589999999999887653
No 11
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=83.23 E-value=2.5 Score=35.32 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=42.6
Q ss_pred ecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322 16 RDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76 (200)
Q Consensus 16 ~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~ 76 (200)
++.+...++|.||-++.+++.++.. . ...+||++++ .|+++.++.+.+.+.+..
T Consensus 208 ~~g~~~~~~i~v~D~a~~i~~~~~~--~---~~~~yni~~~--~~~s~~e~~~~i~~~~g~ 261 (314)
T TIGR02197 208 KDGEQLRDFVYVKDVVDVNLWLLEN--G---VSGIFNLGTG--RARSFNDLADAVFKALGK 261 (314)
T ss_pred CCCCceeeeEEHHHHHHHHHHHHhc--c---cCceEEcCCC--CCccHHHHHHHHHHHhCC
Confidence 4566778999999999998877653 1 2359999886 479999999999887543
No 12
>PF06956 RtcR: Regulator of RNA terminal phosphate cyclase; InterPro: IPR009715 RtcR is a sigma54-dependent enhancer binding protein [] that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3 -terminal phosphate cyclase []. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain IPR002078 from INTERPRO in the central region of the protein sequence.
Probab=83.15 E-value=11 Score=30.10 Aligned_cols=69 Identities=14% Similarity=0.027 Sum_probs=51.9
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHhhcCCCCCCCCCceeeeeeEEecChhHHHHHHHHH---hhchhhhhcc
Q 040322 46 SYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQ---YLLPLKLSGF 118 (200)
Q Consensus 46 ~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~~~~~g~~~~~p~~~~~~~~~~~~~~~~l~---~~lPa~l~D~ 118 (200)
++..|--..-...||..+++++....++.+.+|+.--+. -+-+.+|+....-+++.|++ +++||.++..
T Consensus 67 P~TeV~~~~v~l~dPWDfeeVY~~l~dfa~~Y~Fd~e~E----~YlvHITTGTHVaQIc~FLL~Esr~lPa~LlQt 138 (183)
T PF06956_consen 67 PETEVRLHEVELADPWDFEEVYAALHDFARGYPFDPENE----DYLVHITTGTHVAQICWFLLTESRYLPARLLQT 138 (183)
T ss_pred CCCEEEEEEeccCCCccHHHHHHHHHHHHhhCCCCCCCC----ceEEEecCCcHHHHHHHHHHHHhccccHHHhcc
Confidence 445565555667899999999999999999999874211 35567777777777877776 5789988766
No 13
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=82.52 E-value=3.3 Score=35.45 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=45.0
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~ 76 (200)
.++++.+..-|.|-||-++.+++.++- . .....+||++++ ++.++.++.+.+.+...+
T Consensus 222 ~~~~~g~~~~~~v~v~D~a~a~~~~l~-~---~~~~~~yni~~~--~~~s~~~~~~~i~~~~~~ 279 (352)
T PRK10084 222 PIYGKGDQIRDWLYVEDHARALYKVVT-E---GKAGETYNIGGH--NEKKNLDVVLTICDLLDE 279 (352)
T ss_pred EEeCCCCeEEeeEEHHHHHHHHHHHHh-c---CCCCceEEeCCC--CcCcHHHHHHHHHHHhcc
Confidence 456888899999999999999876653 1 123479999885 478999999988876543
No 14
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=80.54 E-value=6.6 Score=33.75 Aligned_cols=61 Identities=3% Similarity=0.120 Sum_probs=44.3
Q ss_pred eecCCcccccchHHHHHHHHHHHHHHhhhcC-CCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 15 FRDTETVFDMIPADMVVNAMIVAMVAHARQS-SYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 15 ~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~-~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
.++.+..-|+|-||-+|+|++.++-...... ....+||++|+...+.+..++.+.+.+...
T Consensus 216 ~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~ 277 (349)
T TIGR02622 216 IRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWW 277 (349)
T ss_pred ECCCCcccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhc
Confidence 4567888899999999999887664321111 112599999876678999999988777544
No 15
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=80.08 E-value=5.5 Score=34.16 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=45.9
Q ss_pred eeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcCC
Q 040322 14 AFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKS 78 (200)
Q Consensus 14 ~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P 78 (200)
+.++.+..-|+|-||-++.+++.++..... .....+||++++ .+++|+.++.+.+.+.....|
T Consensus 213 ~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~-~~~g~~yni~~~-~~~~s~~e~~~~i~~~~~~~~ 275 (347)
T PRK11908 213 LVDGGSQKRAFTDIDDGIDALMKIIENKDG-VASGKIYNIGNP-KNNHSVRELANKMLELAAEYP 275 (347)
T ss_pred EecCCceeeccccHHHHHHHHHHHHhCccc-cCCCCeEEeCCC-CCCcCHHHHHHHHHHHhcCcc
Confidence 445667788999999999998876643211 012469999763 467999999999988766544
No 16
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=79.32 E-value=4.5 Score=33.97 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=42.7
Q ss_pred eeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 14 AFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 14 ~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
+.++.+..-|+|-||-++++++.++-. . . ..+||++++ .++++.++.+.+.+...
T Consensus 201 ~~g~~~~~r~~i~v~D~a~a~~~~~~~--~--~-~~~yni~~~--~~~s~~el~~~i~~~~~ 255 (308)
T PRK11150 201 FEGSENFKRDFVYVGDVAAVNLWFWEN--G--V-SGIFNCGTG--RAESFQAVADAVLAYHK 255 (308)
T ss_pred ecCCCceeeeeeeHHHHHHHHHHHHhc--C--C-CCeEEcCCC--CceeHHHHHHHHHHHhC
Confidence 346667788999999999998766532 1 1 259999986 46999999999988754
No 17
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=76.82 E-value=5.4 Score=40.81 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=38.7
Q ss_pred cCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHH
Q 040322 17 DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDY 73 (200)
Q Consensus 17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~ 73 (200)
+.....|++|||.|+++++.++-.. .......+||++++ .+++|.++.+.+.+.
T Consensus 1209 ~~~~~~~~~~Vddva~ai~~~~~~~-~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1209 NINNTVNMVPVDHVARVVVAAALNP-PKESELAVAHVTGH--PRIRFNDFLGTLKTY 1262 (1389)
T ss_pred CCCCccccccHHHHHHHHHHHHhCC-cccCCCCEEEeCCC--CCCcHHHHHHHHHHh
Confidence 4455689999999999988775422 11123469999764 478999999988664
No 18
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=75.02 E-value=7.9 Score=33.12 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=44.6
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
.+.++.+..-|+|=||=++++++.++-. . ...+||++|+ .++++.++.+.+.+...
T Consensus 215 ~~~g~g~~~rd~i~V~D~a~a~~~~~~~-~----~~~~yni~~g--~~~s~~e~~~~i~~~~g 270 (343)
T TIGR01472 215 LYLGNLDAKRDWGHAKDYVEAMWLMLQQ-D----KPDDYVIATG--ETHSVREFVEVSFEYIG 270 (343)
T ss_pred eeeCCCccccCceeHHHHHHHHHHHHhc-C----CCccEEecCC--CceeHHHHHHHHHHHcC
Confidence 4568888999999999999998876632 1 1258999986 57999999999887654
No 19
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=73.68 E-value=8.7 Score=36.36 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=44.8
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~ 76 (200)
.++++.+..-+.|.||-|+.++..++. . .....+||++++ +++++.++.+.+.+.+..
T Consensus 214 ~i~g~g~~~r~~ihV~Dva~a~~~~l~-~---~~~~~vyni~~~--~~~s~~el~~~i~~~~g~ 271 (668)
T PLN02260 214 PIHGDGSNVRSYLYCEDVAEAFEVVLH-K---GEVGHVYNIGTK--KERRVIDVAKDICKLFGL 271 (668)
T ss_pred EEecCCCceEeeEEHHHHHHHHHHHHh-c---CCCCCEEEECCC--CeeEHHHHHHHHHHHhCC
Confidence 456788888899999999999876542 1 122469999885 588999999999887643
No 20
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=73.38 E-value=8.8 Score=31.52 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=42.4
Q ss_pred eecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 15 FRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 15 ~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
.++.+...+.|.||-|+.++..++- .. ....+||++++ .++++.++.+.+.+.+.
T Consensus 188 ~g~~~~~~~~i~v~Dva~~i~~~l~-~~---~~~g~~~~~~~--~~~s~~di~~~i~~~~g 242 (292)
T TIGR01777 188 LGSGRQWFSWIHIEDLVQLILFALE-NA---SISGPVNATAP--EPVRNKEFAKALARALH 242 (292)
T ss_pred cCCCCcccccEeHHHHHHHHHHHhc-Cc---ccCCceEecCC--CccCHHHHHHHHHHHhC
Confidence 4667788899999999999876653 21 12358999875 58999999999987754
No 21
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=72.72 E-value=8.6 Score=32.00 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=42.2
Q ss_pred cCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 17 DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
+.+...|.|.||=++.++..++..... .....+||++++ .++++.++.+.+.+.+.
T Consensus 221 ~g~~~~~~v~~~D~a~~~~~~~~~~~~-~~~~~~~n~~~~--~~~s~~ei~~~~~~~~g 276 (328)
T TIGR01179 221 DGTCVRDYIHVMDLADAHLAALEYLLN-GGESHVYNLGYG--QGFSVLEVIEAFKKVSG 276 (328)
T ss_pred CCceEEeeeeHHHHHHHHHHHHhhhhc-CCCcceEEcCCC--CcccHHHHHHHHHHHhC
Confidence 445667899999999998877754322 123479999875 47999999999998764
No 22
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=71.57 E-value=14 Score=30.34 Aligned_cols=53 Identities=8% Similarity=0.100 Sum_probs=39.4
Q ss_pred CcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322 19 ETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76 (200)
Q Consensus 19 ~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~ 76 (200)
+...+.|-||-|+.+++.++-.. .....+||++++ +++++.++.+.+.+....
T Consensus 178 ~~~~~~v~v~Dva~a~~~~~~~~---~~~~~~~ni~~~--~~~s~~e~~~~i~~~~~~ 230 (287)
T TIGR01214 178 DQIGSPTYAKDLARVIAALLQRL---ARARGVYHLANS--GQCSWYEFAQAIFEEAGA 230 (287)
T ss_pred CCCcCCcCHHHHHHHHHHHHhhc---cCCCCeEEEECC--CCcCHHHHHHHHHHHhCc
Confidence 34567788999999988766421 123469999884 589999999999887543
No 23
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=70.08 E-value=11 Score=31.33 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=42.4
Q ss_pred eecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 15 FRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 15 ~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
+++.+..-|.|-||-|+++++.++-.. .....||++++ .++++.++.+.+.+.+.
T Consensus 196 ~~~g~~~~~~i~v~Dv~~~~~~~~~~~----~~~~~~ni~~~--~~~s~~e~~~~i~~~~~ 250 (306)
T PLN02725 196 WGSGSPLREFLHVDDLADAVVFLMRRY----SGAEHVNVGSG--DEVTIKELAELVKEVVG 250 (306)
T ss_pred cCCCCeeeccccHHHHHHHHHHHHhcc----ccCcceEeCCC--CcccHHHHHHHHHHHhC
Confidence 567777889999999999987665421 12357898774 58999999999988763
No 24
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=69.56 E-value=12 Score=32.24 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=44.9
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
.+.++.+..-|+|=||=++++++.++-.... .....+||++++ .++++.++.+.+.+...
T Consensus 224 ~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~-~~~~~~yni~~g--~~~s~~e~~~~i~~~~~ 283 (348)
T PRK15181 224 YINGDGSTSRDFCYIENVIQANLLSATTNDL-ASKNKVYNVAVG--DRTSLNELYYLIRDGLN 283 (348)
T ss_pred EEeCCCCceEeeEEHHHHHHHHHHHHhcccc-cCCCCEEEecCC--CcEeHHHHHHHHHHHhC
Confidence 4568888889999999999998765532111 113469999886 57999999999887653
No 25
>PLN02206 UDP-glucuronate decarboxylase
Probab=68.13 E-value=14 Score=33.48 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=44.0
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
.++++.+..-|+|=||-++.+++.++.. . ...+||++++ +++++.++.+.+.+...
T Consensus 319 ~i~g~G~~~rdfi~V~Dva~ai~~a~e~--~---~~g~yNIgs~--~~~sl~Elae~i~~~~g 374 (442)
T PLN02206 319 TVYGDGKQTRSFQFVSDLVEGLMRLMEG--E---HVGPFNLGNP--GEFTMLELAKVVQETID 374 (442)
T ss_pred EEeCCCCEEEeEEeHHHHHHHHHHHHhc--C---CCceEEEcCC--CceeHHHHHHHHHHHhC
Confidence 4567878888999999999998876531 1 2348999885 58999999999988753
No 26
>PLN02240 UDP-glucose 4-epimerase
Probab=67.69 E-value=13 Score=31.63 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=42.0
Q ss_pred cCCcccccchHHHHHHHHHHHHHHhhhc-CCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 17 DTETVFDMIPADMVVNAMIVAMVAHARQ-SSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 17 d~~~~~DiVPVD~VvNamI~aa~~~~~~-~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
+.+..-|.|=||-++++++.++...... .....+||++++ .++++.++.+.+.+...
T Consensus 233 ~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~--~~~s~~el~~~i~~~~g 290 (352)
T PLN02240 233 DGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTG--KGTSVLEMVAAFEKASG 290 (352)
T ss_pred CCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCC--CcEeHHHHHHHHHHHhC
Confidence 4566778899999999988777532111 122369999886 57999999999988754
No 27
>PLN00016 RNA-binding protein; Provisional
Probab=63.85 E-value=16 Score=31.90 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=43.7
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
.++++.+...++|=||-++.+++.++... . ....+||++++ .++++.++.+.+.+...
T Consensus 235 ~~~g~g~~~~~~i~v~Dva~ai~~~l~~~-~--~~~~~yni~~~--~~~s~~el~~~i~~~~g 292 (378)
T PLN00016 235 PIPGSGIQLTQLGHVKDLASMFALVVGNP-K--AAGQIFNIVSD--RAVTFDGMAKACAKAAG 292 (378)
T ss_pred eecCCCCeeeceecHHHHHHHHHHHhcCc-c--ccCCEEEecCC--CccCHHHHHHHHHHHhC
Confidence 34567778889999999999987766421 1 12479999885 58999999999888654
No 28
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=63.06 E-value=23 Score=29.84 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=43.3
Q ss_pred eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcCC
Q 040322 12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKS 78 (200)
Q Consensus 12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P 78 (200)
..+....+.....+.|+-++.+++..+-.........-|||++++ .++++-++.+.+.+.+...+
T Consensus 171 ~~i~~~~d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~--~~~S~~e~~~~i~~~~~~~~ 235 (286)
T PF04321_consen 171 EPIKLFDDQYRSPTYVDDLARVILELIEKNLSGASPWGIYHLSGP--ERVSRYEFAEAIAKILGLDP 235 (286)
T ss_dssp SEEEEESSCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEEE---B--S-EEHHHHHHHHHHHHTHCT
T ss_pred CeeEeeCCceeCCEEHHHHHHHHHHHHHhcccccccceeEEEecC--cccCHHHHHHHHHHHhCCCC
Confidence 455566677778899999999988877655432233579999885 57999999999988876654
No 29
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=62.62 E-value=18 Score=30.56 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=41.5
Q ss_pred cCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 17 DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
+.+...|+|=||=|+.+++.++-..... ....+||++++ .++++.++.+.+.+...
T Consensus 226 ~g~~~~~~v~v~D~a~~~~~~~~~~~~~-~~~~~~ni~~~--~~~s~~e~~~~i~~~~g 281 (338)
T PRK10675 226 DGTGVRDYIHVMDLADGHVAAMEKLANK-PGVHIYNLGAG--VGSSVLDVVNAFSKACG 281 (338)
T ss_pred CCcEEEeeEEHHHHHHHHHHHHHhhhcc-CCCceEEecCC--CceeHHHHHHHHHHHhC
Confidence 4456789999999999988776431111 22369999875 58999999999988754
No 30
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=59.58 E-value=28 Score=29.66 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=43.9
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
.+.++.+..-|+|=||=+++|++.++-. . ...+||++|+ +++++.++.+.+.+...
T Consensus 221 ~~~g~g~~~rd~i~v~D~a~a~~~~~~~--~---~~~~yni~~g--~~~s~~e~~~~i~~~~g 276 (340)
T PLN02653 221 LFLGNLDASRDWGFAGDYVEAMWLMLQQ--E---KPDDYVVATE--ESHTVEEFLEEAFGYVG 276 (340)
T ss_pred eEeCCCcceecceeHHHHHHHHHHHHhc--C---CCCcEEecCC--CceeHHHHHHHHHHHcC
Confidence 3458888889999999999998877642 1 1358999986 58999999998887653
No 31
>CHL00194 ycf39 Ycf39; Provisional
Probab=53.50 E-value=41 Score=28.42 Aligned_cols=55 Identities=4% Similarity=0.022 Sum_probs=40.6
Q ss_pred ecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 16 RDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 16 ~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
.+.+...+.|-||=|+.+++.+.-. . .....+||++++ .++|+.++.+.+.+...
T Consensus 168 ~~~~~~~~~i~v~Dva~~~~~~l~~-~--~~~~~~~ni~g~--~~~s~~el~~~~~~~~g 222 (317)
T CHL00194 168 TNESTPISYIDTQDAAKFCLKSLSL-P--ETKNKTFPLVGP--KSWNSSEIISLCEQLSG 222 (317)
T ss_pred cCCCCccCccCHHHHHHHHHHHhcC-c--cccCcEEEecCC--CccCHHHHHHHHHHHhC
Confidence 3455667899999999998766532 1 123479999885 57999999999988754
No 32
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=53.40 E-value=35 Score=30.79 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=43.9
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
.++++.+..-|+|=||-++.+++.++- . . ...+||++++ +++++.++.+.+.+...
T Consensus 320 ~v~g~g~~~rdfi~V~Dva~ai~~~~~-~-~---~~giyNIgs~--~~~Si~ela~~I~~~~g 375 (436)
T PLN02166 320 TVYGDGKQTRSFQYVSDLVDGLVALME-G-E---HVGPFNLGNP--GEFTMLELAEVVKETID 375 (436)
T ss_pred EEeCCCCeEEeeEEHHHHHHHHHHHHh-c-C---CCceEEeCCC--CcEeHHHHHHHHHHHhC
Confidence 456787888899999999999876653 1 1 2359999885 58999999999988764
No 33
>PLN02572 UDP-sulfoquinovose synthase
Probab=53.21 E-value=32 Score=30.98 Aligned_cols=57 Identities=5% Similarity=0.074 Sum_probs=43.1
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHH
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDY 73 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~ 73 (200)
.++++.+..-|+|=||=||++++.++-.... .....|||+++ .++++.++.+.+.+.
T Consensus 300 ~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~-~g~~~i~Nigs---~~~si~el~~~i~~~ 356 (442)
T PLN02572 300 TVYGKGGQTRGFLDIRDTVRCIEIAIANPAK-PGEFRVFNQFT---EQFSVNELAKLVTKA 356 (442)
T ss_pred eecCCCCEEECeEEHHHHHHHHHHHHhChhh-cCceeEEEeCC---CceeHHHHHHHHHHH
Confidence 4567888888999999999999877642111 12246899965 269999999999987
No 34
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=49.45 E-value=38 Score=29.56 Aligned_cols=57 Identities=11% Similarity=0.210 Sum_probs=43.7
Q ss_pred eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
..++++.+..-|+|=||-++.+++.++.. . ...+||++++ +++++.++.+.+.+...
T Consensus 226 i~~~g~g~~~r~~i~v~D~a~ai~~~~~~---~--~~~~~nv~~~--~~~s~~el~~~i~~~~g 282 (370)
T PLN02695 226 FEMWGDGKQTRSFTFIDECVEGVLRLTKS---D--FREPVNIGSD--EMVSMNEMAEIALSFEN 282 (370)
T ss_pred eEEeCCCCeEEeEEeHHHHHHHHHHHHhc---c--CCCceEecCC--CceeHHHHHHHHHHHhC
Confidence 34678888889999999999998765432 1 2358999885 68999999999877543
No 35
>PLN02778 3,5-epimerase/4-reductase
Probab=44.82 E-value=54 Score=27.63 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 23 DMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 23 DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
|.+=||-+++|++.+.- . . ...+||++|+. ++++.++.+.+.+.+.
T Consensus 193 s~~yv~D~v~al~~~l~-~---~-~~g~yNigs~~--~iS~~el~~~i~~~~~ 238 (298)
T PLN02778 193 SMTILDELLPISIEMAK-R---N-LTGIYNFTNPG--VVSHNEILEMYRDYID 238 (298)
T ss_pred CCEEHHHHHHHHHHHHh-C---C-CCCeEEeCCCC--cccHHHHHHHHHHHhC
Confidence 45556677888776642 1 1 12499998764 8999999998888765
No 36
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=43.20 E-value=61 Score=30.77 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=45.6
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~ 76 (200)
.+.++.+..-|.|=||=++.+++.++-.... .....+||++++ .+++++.++.+.+.+....
T Consensus 526 ~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~-~~~g~iyni~~~-~~~~s~~el~~~i~~~~g~ 587 (660)
T PRK08125 526 KLVDGGKQKRCFTDIRDGIEALFRIIENKDN-RCDGQIINIGNP-DNEASIRELAEMLLASFEK 587 (660)
T ss_pred EEeCCCceeeceeeHHHHHHHHHHHHhcccc-ccCCeEEEcCCC-CCceeHHHHHHHHHHHhcc
Confidence 3557778888999999999998877642111 112469999876 3479999999999887654
No 37
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=42.79 E-value=1.1e+02 Score=26.88 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=50.1
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHhhcCCCCCCCCCceeeeeeEEecChhHHHHHHHHH---hhchhhhhcc
Q 040322 46 SYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQ---YLLPLKLSGF 118 (200)
Q Consensus 46 ~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~~~~~g~~~~~p~~~~~~~~~~~~~~~~l~---~~lPa~l~D~ 118 (200)
++..|.-+--...||..+.+++....++.+.+|+..- ---+-..+++....-+++.|++ +++||.++..
T Consensus 68 petev~~vei~lrnpwdfeevy~~lhdfar~y~f~~e----~edylihittgthvaqicwfllaearylparl~qt 139 (531)
T COG4650 68 PETEVVSVEIELRNPWDFEEVYACLHDFARGYEFQPE----KEDYLIHITTGTHVAQICWFLLAEARYLPARLIQT 139 (531)
T ss_pred CcceeEEEEEEecCcccHHHHHHHHHHHhhcCCCCCc----ccceEEEEecCccHHHHHHHHHHHhhhccHhHhcc
Confidence 3445665556679999999999999999999998643 1234566677666667776665 6789887654
No 38
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=42.26 E-value=45 Score=33.60 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=43.8
Q ss_pred eeeeecCCcccccchHHHHHHH-HHHHHHHhhhcCC-----CceEEEeecCCCCcccHHHHHHHHHHHhhcC
Q 040322 12 YYAFRDTETVFDMIPADMVVNA-MIVAMVAHARQSS-----YVNIYRVGSSLRNPVTFMNVLDYSFDYFTKK 77 (200)
Q Consensus 12 ~~~~~d~~~~~DiVPVD~VvNa-mI~aa~~~~~~~~-----~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~ 77 (200)
+.++..--.-+-++|+|...|+ +++..|....+.. ....--|++..+|.+-||-+.++..+|+.+.
T Consensus 246 ~~~p~~~~~p~~~~p~d~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vwgm~~~ylm~yy~r~ 317 (1108)
T PTZ00374 246 KHLPVGFRDPATVTPLDVALNTALLAVLLLCHGGLAECVECAAEMQLCGAPGDNSLVWGMVAEYLMDYYGRF 317 (1108)
T ss_pred hcccccCCCCceeccHHHHHHHHHHHHHHHhcCChHHHhcchhhheeccCCccceeeHHHHHHHHHHHHhhh
Confidence 3444444555678999999996 5655554322210 1122336777899999999999999997764
No 39
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=40.40 E-value=57 Score=27.42 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 22 FDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 22 ~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
-|+|-||-|+.+++.++-.. . ...+||+ ++. ++++.++.+.+.+.+.
T Consensus 225 r~~i~v~Dva~a~~~~l~~~-~---~~~~~ni-~~~--~~s~~ei~~~i~~~~~ 271 (325)
T PLN02989 225 HRFVDVRDVALAHVKALETP-S---ANGRYII-DGP--VVTIKDIENVLREFFP 271 (325)
T ss_pred cCeeEHHHHHHHHHHHhcCc-c---cCceEEE-ecC--CCCHHHHHHHHHHHCC
Confidence 47888999999987765321 1 1248998 443 7999999999998763
No 40
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=38.57 E-value=87 Score=25.74 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=42.5
Q ss_pred eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcC
Q 040322 13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKK 77 (200)
Q Consensus 13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~ 77 (200)
.+.++.+..-|+|=||=++.+++.++... ... +||++++. .+.+.+++.+.+.+.....
T Consensus 201 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~-~~ni~~~~-~~~~~~e~~~~~~~~~~~~ 259 (314)
T COG0451 201 VIGGDGSQTRDFVYVDDVADALLLALENP----DGG-VFNIGSGT-AEITVRELAEAVAEAVGSK 259 (314)
T ss_pred eEeCCCceeEeeEeHHHHHHHHHHHHhCC----CCc-EEEeCCCC-CcEEHHHHHHHHHHHhCCC
Confidence 45555566667777999999887666422 112 99998865 6899999999998875543
No 41
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=37.49 E-value=1.4e+02 Score=25.03 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHh
Q 040322 27 ADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYF 74 (200)
Q Consensus 27 VD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~ 74 (200)
+|.++.++..+.- . .....+||++++ .++||.++.+.+.+..
T Consensus 193 ~d~~~~~~~~~~~-~---~~~~giyni~~~--~~~s~~e~~~~i~~~~ 234 (299)
T PRK09987 193 ADCTAHAIRVALN-K---PEVAGLYHLVAS--GTTTWHDYAALVFEEA 234 (299)
T ss_pred HHHHHHHHHHhhc-c---CCCCCeEEeeCC--CCccHHHHHHHHHHHH
Confidence 5666655543331 1 112359999886 5799999999887643
No 42
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=36.70 E-value=1e+02 Score=25.70 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=36.6
Q ss_pred CCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 18 TETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 18 ~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
++...|.|-||=|+++++.++-. .. ....||++ + .++++.++.+.+.+...
T Consensus 219 ~~~~~~~i~v~Dva~a~~~~~~~-~~---~~~~~~~~-g--~~~s~~e~~~~i~~~~~ 269 (322)
T PLN02662 219 PNASYRWVDVRDVANAHIQAFEI-PS---ASGRYCLV-E--RVVHYSEVVKILHELYP 269 (322)
T ss_pred CCCCcCeEEHHHHHHHHHHHhcC-cC---cCCcEEEe-C--CCCCHHHHHHHHHHHCC
Confidence 34567999999999998866532 11 12367775 3 46999999999887643
No 43
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=36.29 E-value=19 Score=29.68 Aligned_cols=52 Identities=19% Similarity=0.029 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHhhHHHHHHhcc-----CcccceEEEeChhHHHHHHHcCcCcccccceecc
Q 040322 133 YFEGMLTGRRRKTNFVMPLVEIYG-----PHLLSNATFDDRNTEKLRMATRENMMETDIFSFI 190 (200)
Q Consensus 133 ~~~~~~~k~~rki~~~~~~~~~~~-----~Ft~~~w~F~~~N~~~L~~~m~~~~~dr~~F~fD 190 (200)
+++.+|...||..+ +=..++. | .-++|.||.+|-.++-..... -....|.-|
T Consensus 142 ~k~~~Me~FYR~mR---kr~~ILmd~~g~P-~GGkWnfD~eNRk~~p~~~~~--P~~~~~~~d 198 (224)
T PF04244_consen 142 RKRLRMEYFYREMR---KRFGILMDEDGKP-VGGKWNFDAENRKKLPKGIPI--PEPPRFEPD 198 (224)
T ss_dssp -SS--HHHHHHHHH---HHHTTTE-ETTEE-GGGSS--GGGS-------TTS-----------
T ss_pred CCceeHHHHHHHHH---HHcCccccCCCCc-CCCcCCCChhhccCCCCCCCC--CCCCCCCCC
Confidence 56778888998776 6666664 4 559999999999999888765 555555544
No 44
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=32.38 E-value=91 Score=27.05 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=44.1
Q ss_pred eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322 12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76 (200)
Q Consensus 12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~ 76 (200)
++.+||....-..+=|+-|++|+-+++-+ + +...|||+++. -+.+.-++.+.+.+++.+
T Consensus 211 ~~i~g~g~~~rs~l~veD~~ea~~~v~~K-g---~~geIYNIgtd--~e~~~~~l~k~i~eli~~ 269 (331)
T KOG0747|consen 211 YPIHGDGLQTRSYLYVEDVSEAFKAVLEK-G---ELGEIYNIGTD--DEMRVIDLAKDICELFEK 269 (331)
T ss_pred cceecCcccceeeEeHHHHHHHHHHHHhc-C---CccceeeccCc--chhhHHHHHHHHHHHHHH
Confidence 45667766666777799999998766543 2 23579999984 578888888888887765
No 45
>PLN02214 cinnamoyl-CoA reductase
Probab=30.72 E-value=1.2e+02 Score=25.93 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=36.2
Q ss_pred cccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 20 TVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 20 ~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
..-|+|=||=|+.+++.++-. .. ....||++++ +.++.++.+.+.+.+.
T Consensus 221 ~~~~~i~V~Dva~a~~~al~~-~~---~~g~yn~~~~---~~~~~el~~~i~~~~~ 269 (342)
T PLN02214 221 LTQAYVDVRDVALAHVLVYEA-PS---ASGRYLLAES---ARHRGEVVEILAKLFP 269 (342)
T ss_pred CCcCeeEHHHHHHHHHHHHhC-cc---cCCcEEEecC---CCCHHHHHHHHHHHCC
Confidence 345899999999998877642 11 1247998763 5799999999988763
No 46
>PLN00198 anthocyanidin reductase; Provisional
Probab=29.70 E-value=1e+02 Score=26.02 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=32.5
Q ss_pred cccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHh
Q 040322 22 FDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYF 74 (200)
Q Consensus 22 ~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~ 74 (200)
.|+|-||-+|++++.++... . ...+|+ +++ .++++.++.+.+.+..
T Consensus 238 ~~~i~V~D~a~a~~~~~~~~-~---~~~~~~-~~~--~~~s~~el~~~i~~~~ 283 (338)
T PLN00198 238 ISITHVEDVCRAHIFLAEKE-S---ASGRYI-CCA--ANTSVPELAKFLIKRY 283 (338)
T ss_pred cceeEHHHHHHHHHHHhhCc-C---cCCcEE-Eec--CCCCHHHHHHHHHHHC
Confidence 59999999999987765421 1 123574 454 3689999999887654
No 47
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=29.08 E-value=2.7e+02 Score=23.29 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=43.7
Q ss_pred eeeeecCCcccccchHHHHHHHHHHHHHHhhhc----CCCceEEEeecCCCCccc-HHHHHHHHHHH
Q 040322 12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQ----SSYVNIYRVGSSLRNPVT-FMNVLDYSFDY 73 (200)
Q Consensus 12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~----~~~~~VYn~~Ss~~NP~t-~~~~~~~~~~~ 73 (200)
....++.+...|++=|+=|+.|.|.|+..-.+. ......|+|+.+ .|+. +.++...+.+.
T Consensus 203 ~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~--~p~~~~~~f~~~~~~~ 267 (280)
T PF01073_consen 203 LFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDG--EPVPSFWDFMRPLWEA 267 (280)
T ss_pred ceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECC--CccCcHHHHHHHHHHH
Confidence 345778888999999999999998777543221 124579999885 5888 77877665554
No 48
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=28.62 E-value=1.1e+02 Score=25.59 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 21 VFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 21 ~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
..|+|=||=|+.+++.++-.. . ...+||+ ++ .++++.++.+.+.+.+.
T Consensus 223 ~~~~v~v~Dva~a~~~al~~~-~---~~~~yni-~~--~~~s~~e~~~~i~~~~~ 270 (322)
T PLN02986 223 FYRFVDVRDVALAHIKALETP-S---ANGRYII-DG--PIMSVNDIIDILRELFP 270 (322)
T ss_pred CcceeEHHHHHHHHHHHhcCc-c---cCCcEEE-ec--CCCCHHHHHHHHHHHCC
Confidence 458899999999988776421 1 1237998 44 26999999999988764
No 49
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=25.20 E-value=1.4e+02 Score=26.73 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhhcCCCceEEEeecCCCCcc-------cHHHHHHHHHH
Q 040322 31 VNAMIVAMVAHARQSSYVNIYRVGSSLRNPV-------TFMNVLDYSFD 72 (200)
Q Consensus 31 vNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~-------t~~~~~~~~~~ 72 (200)
.+.||+....... .++-+.|.|+ .||. -|.++.+.+.+
T Consensus 159 f~~mla~L~~a~~--~~vvLLH~Cc--HNPTG~D~t~~qW~~l~~~~~~ 203 (396)
T COG1448 159 FDGMLADLKTAPE--GSVVLLHGCC--HNPTGIDPTEEQWQELADLIKE 203 (396)
T ss_pred HHHHHHHHHhCCC--CCEEEEecCC--CCCCCCCCCHHHHHHHHHHHHH
Confidence 6788877654332 4578999887 6886 57888887764
No 50
>PRK05865 hypothetical protein; Provisional
Probab=22.91 E-value=1.4e+02 Score=29.65 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=37.6
Q ss_pred ecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHH
Q 040322 16 RDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFD 72 (200)
Q Consensus 16 ~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~ 72 (200)
++.+...|+|=||-|+.+++.++-.. . ....+||++++ +++|+.++.+.+.+
T Consensus 149 G~~~~~~dfIhVdDVA~Ai~~aL~~~-~--~~ggvyNIgsg--~~~Si~EIae~l~~ 200 (854)
T PRK05865 149 GYADRVVQVVHSDDAQRLLVRALLDT-V--IDSGPVNLAAP--GELTFRRIAAALGR 200 (854)
T ss_pred CCCCceEeeeeHHHHHHHHHHHHhCC-C--cCCCeEEEECC--CcccHHHHHHHHhh
Confidence 44455668999999999987665321 1 12358999986 57899999987765
No 51
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=21.36 E-value=1.4e+02 Score=25.68 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=39.1
Q ss_pred ecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322 16 RDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75 (200)
Q Consensus 16 ~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~ 75 (200)
||...-.--|=+|-+||+|+=+.-+. .-.-.||+++ .||++..++.+.+.+...
T Consensus 187 GsGrQ~~SWIhieD~v~~I~fll~~~----~lsGp~N~ta--P~PV~~~~F~~al~r~l~ 240 (297)
T COG1090 187 GSGRQWFSWIHIEDLVNAILFLLENE----QLSGPFNLTA--PNPVRNKEFAHALGRALH 240 (297)
T ss_pred CCCCceeeeeeHHHHHHHHHHHHhCc----CCCCcccccC--CCcCcHHHHHHHHHHHhC
Confidence 45555556678899999987665422 1234799988 699999999998887643
No 52
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=21.14 E-value=2.9e+02 Score=24.33 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=38.8
Q ss_pred eeecCCcc-cccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322 14 AFRDTETV-FDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76 (200)
Q Consensus 14 ~~~d~~~~-~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~ 76 (200)
+.+|.+.. ...|=||=++.+++.++... .....+||+++. ..++|+.++.+.+.+...+
T Consensus 239 ~~GdG~~~~~~~I~v~DlA~~i~~~~~~~---~~~~~~~~Iggp-~~~~S~~Eia~~l~~~lG~ 298 (390)
T PLN02657 239 MFGDGKLCACKPISEADLASFIADCVLDE---SKINKVLPIGGP-GKALTPLEQGEMLFRILGK 298 (390)
T ss_pred EecCCcccccCceeHHHHHHHHHHHHhCc---cccCCEEEcCCC-CcccCHHHHHHHHHHHhCC
Confidence 56666643 35566777777766655321 122479999752 3578999999999887543
Done!