Query 040323
Match_columns 228
No_of_seqs 106 out of 1042
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:19:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 4E-30 8.7E-35 217.3 24.3 217 8-226 60-301 (302)
2 PTZ00343 triose or hexose phos 100.0 3.2E-29 6.9E-34 215.6 27.2 212 9-220 110-350 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 3.3E-32 7.2E-37 227.3 8.4 225 2-226 72-315 (316)
4 PF08449 UAA: UAA transporter 99.9 3.8E-24 8.3E-29 180.9 25.2 217 6-224 57-303 (303)
5 PLN00411 nodulin MtN21 family 99.9 2.8E-22 6.1E-27 172.4 26.9 211 10-224 75-334 (358)
6 PRK11689 aromatic amino acid e 99.9 2.2E-22 4.8E-27 169.5 25.3 179 37-222 96-291 (295)
7 PRK11272 putative DMT superfam 99.9 3.3E-21 7.1E-26 162.2 26.4 209 8-222 63-289 (292)
8 PRK11453 O-acetylserine/cystei 99.9 1E-20 2.2E-25 159.8 26.2 184 37-221 91-290 (299)
9 TIGR00950 2A78 Carboxylate/Ami 99.9 2E-20 4.3E-25 154.5 25.4 202 10-213 43-259 (260)
10 KOG1444 Nucleotide-sugar trans 99.9 2.8E-21 6E-26 159.0 16.8 217 9-227 73-309 (314)
11 PRK15430 putative chlorampheni 99.9 8.7E-20 1.9E-24 153.8 24.8 192 21-218 81-285 (296)
12 PF06027 DUF914: Eukaryotic pr 99.9 2.3E-20 5E-25 158.0 20.1 209 10-223 77-310 (334)
13 PRK10532 threonine and homoser 99.9 3.1E-19 6.7E-24 150.3 24.9 204 9-223 67-286 (293)
14 KOG1443 Predicted integral mem 99.8 2.4E-20 5.1E-25 151.9 14.3 213 7-219 78-316 (349)
15 TIGR03340 phn_DUF6 phosphonate 99.8 3.1E-19 6.6E-24 149.4 20.6 207 9-215 59-280 (281)
16 KOG1442 GDP-fucose transporter 99.8 1.2E-21 2.7E-26 157.1 4.2 216 8-225 97-334 (347)
17 COG0697 RhaT Permeases of the 99.8 3.1E-16 6.6E-21 130.7 25.5 194 22-220 79-289 (292)
18 PF03151 TPT: Triose-phosphate 99.8 3.3E-17 7.2E-22 124.8 15.6 132 87-218 1-153 (153)
19 KOG1580 UDP-galactose transpor 99.7 2.3E-17 4.9E-22 130.2 11.0 206 15-222 87-317 (337)
20 KOG1581 UDP-galactose transpor 99.7 2.5E-15 5.5E-20 122.7 19.3 215 7-223 77-318 (327)
21 TIGR00776 RhaT RhaT L-rhamnose 99.7 1.6E-14 3.5E-19 121.4 23.8 174 39-219 93-289 (290)
22 COG5070 VRG4 Nucleotide-sugar 99.7 2.2E-16 4.7E-21 123.7 11.4 214 9-225 64-303 (309)
23 KOG2765 Predicted membrane pro 99.7 1.4E-15 3E-20 127.4 15.6 210 11-220 153-392 (416)
24 TIGR00688 rarD rarD protein. T 99.7 3E-14 6.5E-19 117.7 22.0 168 16-193 73-255 (256)
25 COG2962 RarD Predicted permeas 99.6 1.5E-12 3.2E-17 106.4 22.7 178 39-226 105-291 (293)
26 PF04142 Nuc_sug_transp: Nucle 99.6 8.7E-13 1.9E-17 108.0 20.9 192 11-208 15-243 (244)
27 COG5006 rhtA Threonine/homoser 99.6 8E-13 1.7E-17 105.6 19.7 213 2-224 60-288 (292)
28 KOG1582 UDP-galactose transpor 99.6 3.8E-14 8.2E-19 114.2 11.8 214 5-220 98-334 (367)
29 KOG1583 UDP-N-acetylglucosamin 99.6 8.5E-15 1.8E-19 118.1 7.6 210 9-220 60-316 (330)
30 KOG4510 Permease of the drug/m 99.5 2.9E-14 6.3E-19 114.6 5.5 194 26-223 110-330 (346)
31 KOG2234 Predicted UDP-galactos 99.4 5.2E-10 1.1E-14 94.0 22.4 204 14-223 93-327 (345)
32 KOG3912 Predicted integral mem 99.4 6.4E-11 1.4E-15 96.2 15.8 180 37-218 117-334 (372)
33 TIGR00803 nst UDP-galactose tr 99.2 4.2E-10 9E-15 91.0 11.6 170 37-216 9-222 (222)
34 PF00892 EamA: EamA-like trans 99.1 7.6E-10 1.6E-14 80.6 10.3 117 96-217 1-125 (126)
35 COG2510 Predicted membrane pro 99.1 6E-10 1.3E-14 80.3 8.0 127 87-217 4-138 (140)
36 KOG2766 Predicted membrane pro 99.1 1.8E-10 3.9E-15 92.5 5.1 177 40-224 113-305 (336)
37 PRK15430 putative chlorampheni 99.1 1.8E-08 3.8E-13 85.1 17.6 131 82-217 4-144 (296)
38 TIGR00688 rarD rarD protein. T 99.0 4.8E-08 1E-12 80.6 16.4 127 86-217 2-141 (256)
39 TIGR03340 phn_DUF6 phosphonate 98.9 6.3E-08 1.4E-12 81.1 14.9 125 88-218 3-135 (281)
40 PF06800 Sugar_transport: Suga 98.8 2.9E-06 6.2E-11 70.0 21.2 195 13-214 45-267 (269)
41 PLN00411 nodulin MtN21 family 98.7 1.4E-06 2.9E-11 75.5 17.0 130 86-218 13-156 (358)
42 PRK02971 4-amino-4-deoxy-L-ara 98.6 3.2E-06 6.9E-11 62.5 14.2 124 86-223 2-127 (129)
43 PF13536 EmrE: Multidrug resis 98.5 6.7E-07 1.5E-11 64.6 8.5 70 13-82 34-110 (113)
44 PTZ00343 triose or hexose phos 98.4 2.1E-05 4.7E-10 67.9 16.6 130 84-217 47-185 (350)
45 TIGR00950 2A78 Carboxylate/Ami 98.4 6.8E-06 1.5E-10 67.6 12.9 115 101-218 4-119 (260)
46 COG2962 RarD Predicted permeas 98.4 2.3E-05 5E-10 64.6 15.2 131 84-220 5-146 (293)
47 PRK11689 aromatic amino acid e 98.3 1.7E-05 3.6E-10 67.0 13.9 128 86-217 4-136 (295)
48 PRK11272 putative DMT superfam 98.3 6.9E-05 1.5E-09 63.1 16.3 126 88-218 10-141 (292)
49 PRK11453 O-acetylserine/cystei 98.3 5.4E-05 1.2E-09 63.9 15.2 125 88-218 6-132 (299)
50 KOG4314 Predicted carbohydrate 98.2 4.1E-06 8.8E-11 65.3 7.0 185 37-222 84-280 (290)
51 TIGR00817 tpt Tpt phosphate/ph 98.2 7.8E-05 1.7E-09 63.0 15.3 121 94-217 10-136 (302)
52 PF13536 EmrE: Multidrug resis 98.1 3.4E-05 7.4E-10 55.6 9.7 71 151-222 39-110 (113)
53 PRK15051 4-amino-4-deoxy-L-ara 98.1 0.00031 6.7E-09 50.5 13.5 55 163-217 54-108 (111)
54 PF00892 EamA: EamA-like trans 98.0 3.2E-05 6.9E-10 55.9 6.9 69 8-76 48-124 (126)
55 PF08449 UAA: UAA transporter 97.9 0.00029 6.3E-09 59.7 13.0 127 97-223 11-141 (303)
56 TIGR00776 RhaT RhaT L-rhamnose 97.9 0.00023 5.1E-09 59.9 12.2 129 87-222 2-140 (290)
57 PRK15051 4-amino-4-deoxy-L-ara 97.9 0.00019 4.2E-09 51.6 9.5 47 31-77 62-108 (111)
58 PF05653 Mg_trans_NIPA: Magnes 97.8 0.00091 2E-08 56.6 14.6 62 15-76 51-120 (300)
59 COG0697 RhaT Permeases of the 97.7 0.0016 3.4E-08 53.9 14.5 135 85-222 6-147 (292)
60 PF04142 Nuc_sug_transp: Nucle 97.7 0.00033 7.1E-09 57.5 9.2 78 145-222 16-93 (244)
61 PRK10532 threonine and homoser 97.4 0.012 2.7E-07 49.4 15.6 102 85-190 11-115 (293)
62 PRK10452 multidrug efflux syst 97.4 0.007 1.5E-07 44.1 11.7 56 165-220 49-105 (120)
63 PRK09541 emrE multidrug efflux 97.3 0.0068 1.5E-07 43.4 10.8 58 164-221 48-106 (110)
64 PF06027 DUF914: Eukaryotic pr 97.3 0.011 2.5E-07 50.6 13.7 74 146-219 79-152 (334)
65 PRK13499 rhamnose-proton sympo 97.3 0.11 2.3E-06 44.9 22.9 199 19-218 79-341 (345)
66 COG2510 Predicted membrane pro 97.2 0.00076 1.7E-08 49.1 5.3 61 17-77 71-138 (140)
67 PRK10650 multidrug efflux syst 97.2 0.021 4.6E-07 40.8 12.6 53 165-217 54-107 (109)
68 PF05653 Mg_trans_NIPA: Magnes 97.2 0.004 8.8E-08 52.7 10.2 116 84-217 5-121 (300)
69 PRK11431 multidrug efflux syst 97.0 0.022 4.8E-07 40.4 10.8 55 165-219 48-103 (105)
70 PF04657 DUF606: Protein of un 97.0 0.038 8.3E-07 41.3 12.4 123 88-214 3-137 (138)
71 COG2076 EmrE Membrane transpor 96.8 0.033 7.1E-07 39.4 10.0 56 165-220 49-105 (106)
72 PRK10452 multidrug efflux syst 96.7 0.019 4.1E-07 41.8 8.5 62 17-78 34-103 (120)
73 KOG2234 Predicted UDP-galactos 96.6 0.24 5.3E-06 42.3 15.7 71 148-218 94-164 (345)
74 PRK02971 4-amino-4-deoxy-L-ara 96.5 0.034 7.4E-07 41.0 9.1 57 23-79 58-123 (129)
75 PRK11431 multidrug efflux syst 96.3 0.055 1.2E-06 38.4 8.7 57 21-77 37-101 (105)
76 PRK10650 multidrug efflux syst 96.2 0.049 1.1E-06 38.9 8.4 55 22-76 44-106 (109)
77 PF00893 Multi_Drug_Res: Small 96.2 0.095 2.1E-06 36.3 9.6 46 164-209 47-93 (93)
78 PRK09541 emrE multidrug efflux 96.1 0.073 1.6E-06 38.1 8.6 40 39-78 64-103 (110)
79 COG2076 EmrE Membrane transpor 96.0 0.056 1.2E-06 38.3 7.7 56 22-77 39-102 (106)
80 COG4975 GlcU Putative glucose 96.0 0.00079 1.7E-08 54.4 -2.0 177 37-220 91-287 (288)
81 PF03151 TPT: Triose-phosphate 95.6 0.13 2.7E-06 38.5 8.7 40 37-76 112-151 (153)
82 PF07857 DUF1632: CEO family ( 95.4 0.022 4.8E-07 46.9 4.4 131 87-222 1-138 (254)
83 KOG4510 Permease of the drug/m 95.3 0.0073 1.6E-07 49.6 1.0 124 86-218 38-169 (346)
84 KOG2922 Uncharacterized conser 95.3 0.13 2.9E-06 43.4 8.4 49 29-77 87-135 (335)
85 PRK13499 rhamnose-proton sympo 95.1 1 2.2E-05 38.9 13.7 128 85-218 6-153 (345)
86 PF10639 UPF0546: Uncharacteri 94.8 0.48 1E-05 34.0 9.1 105 95-214 5-110 (113)
87 COG3238 Uncharacterized protei 94.7 1.3 2.8E-05 33.5 11.6 132 85-220 4-148 (150)
88 PF00893 Multi_Drug_Res: Small 94.6 0.2 4.4E-06 34.6 6.8 48 22-69 38-93 (93)
89 PF06800 Sugar_transport: Suga 94.5 0.6 1.3E-05 38.8 10.4 80 145-224 44-128 (269)
90 PF10639 UPF0546: Uncharacteri 94.4 0.26 5.5E-06 35.5 7.0 63 13-75 42-111 (113)
91 KOG2765 Predicted membrane pro 94.3 0.05 1.1E-06 46.8 3.7 79 146-224 159-237 (416)
92 COG5006 rhtA Threonine/homoser 92.6 0.66 1.4E-05 38.1 7.3 38 37-74 241-278 (292)
93 KOG1581 UDP-galactose transpor 89.6 5.6 0.00012 33.6 10.1 128 96-223 24-160 (327)
94 KOG2922 Uncharacterized conser 88.5 0.12 2.6E-06 43.7 -0.4 117 84-217 19-135 (335)
95 KOG4314 Predicted carbohydrate 88.3 0.72 1.6E-05 36.5 3.9 59 159-217 66-124 (290)
96 TIGR00803 nst UDP-galactose tr 87.0 1.3 2.8E-05 35.5 4.9 39 37-75 183-221 (222)
97 KOG3912 Predicted integral mem 83.3 3.8 8.2E-05 34.4 5.8 54 163-216 103-156 (372)
98 PF04342 DUF486: Protein of un 78.1 2.3 5E-05 30.0 2.6 29 187-215 77-105 (108)
99 PRK02237 hypothetical protein; 77.7 5.6 0.00012 28.2 4.4 46 174-219 61-106 (109)
100 PRK02237 hypothetical protein; 77.5 6.2 0.00013 28.0 4.6 47 32-78 58-105 (109)
101 PF02694 UPF0060: Uncharacteri 76.9 3.9 8.5E-05 28.9 3.5 49 30-78 54-103 (107)
102 KOG1441 Glucose-6-phosphate/ph 76.5 3 6.6E-05 35.6 3.4 121 96-217 27-176 (316)
103 PF04342 DUF486: Protein of un 76.4 13 0.00029 26.2 6.0 30 47-76 77-106 (108)
104 COG4975 GlcU Putative glucose 75.3 1.1 2.4E-05 36.7 0.5 128 87-221 3-139 (288)
105 KOG1580 UDP-galactose transpor 74.2 14 0.0003 30.3 6.4 62 15-76 243-311 (337)
106 PF02694 UPF0060: Uncharacteri 73.4 6.5 0.00014 27.8 3.8 46 174-219 59-104 (107)
107 PF06379 RhaT: L-rhamnose-prot 73.0 62 0.0013 28.0 13.5 129 85-219 6-154 (344)
108 PRK10655 potE putrescine trans 71.5 73 0.0016 28.2 11.8 25 201-225 409-433 (438)
109 PRK11357 frlA putative fructos 70.8 76 0.0016 28.1 14.6 21 204-224 419-439 (445)
110 PF04657 DUF606: Protein of un 70.2 41 0.00088 24.9 7.8 36 40-75 99-138 (138)
111 COG3169 Uncharacterized protei 65.5 22 0.00047 24.9 5.0 30 187-216 84-113 (116)
112 COG1742 Uncharacterized conser 65.2 31 0.00068 24.3 5.8 48 32-79 57-105 (109)
113 COG3169 Uncharacterized protei 56.9 29 0.00064 24.2 4.4 29 48-76 85-113 (116)
114 KOG1444 Nucleotide-sugar trans 56.2 1.3E+02 0.0028 25.7 13.1 112 99-217 25-148 (314)
115 PF07444 Ycf66_N: Ycf66 protei 52.4 17 0.00036 24.7 2.7 29 197-225 4-32 (84)
116 PRK10644 arginine:agmatin anti 45.2 2.2E+02 0.0048 25.2 11.2 40 180-219 388-427 (445)
117 TIGR00905 2A0302 transporter, 44.1 2.4E+02 0.0052 25.3 16.6 24 200-223 416-439 (473)
118 PRK10435 cadB lysine/cadaverin 43.7 2.3E+02 0.005 25.0 13.6 29 200-228 405-433 (435)
119 PF10855 DUF2648: Protein of u 42.5 20 0.00044 19.4 1.5 21 206-226 6-26 (33)
120 TIGR02865 spore_II_E stage II 41.9 3.4E+02 0.0073 26.4 12.8 41 36-76 14-54 (764)
121 TIGR01167 LPXTG_anchor LPXTG-m 41.8 28 0.0006 18.6 2.1 11 199-209 11-21 (34)
122 KOG2766 Predicted membrane pro 40.5 2.2 4.8E-05 35.2 -3.5 64 153-216 85-148 (336)
123 COG3086 RseC Positive regulato 39.4 1.4E+02 0.003 22.5 6.0 25 170-194 72-96 (150)
124 cd01324 cbb3_Oxidase_CcoQ Cyto 35.7 30 0.00066 20.7 1.7 20 205-224 18-37 (48)
125 PF04246 RseC_MucC: Positive r 34.0 1.1E+02 0.0024 22.2 5.0 25 170-194 65-89 (135)
126 COG5070 VRG4 Nucleotide-sugar 33.6 2.7E+02 0.0059 22.9 9.4 58 165-222 87-144 (309)
127 KOG1582 UDP-galactose transpor 33.5 3E+02 0.0065 23.3 8.0 38 45-82 299-336 (367)
128 PF05545 FixQ: Cbb3-type cytoc 32.1 42 0.00092 19.9 2.0 19 205-223 17-35 (49)
129 KOG4831 Unnamed protein [Funct 29.9 1.2E+02 0.0026 21.6 4.1 39 37-75 84-122 (125)
130 PF05961 Chordopox_A13L: Chord 28.2 87 0.0019 20.2 2.9 22 202-223 6-27 (68)
131 KOG1442 GDP-fucose transporter 27.4 9.1 0.0002 32.1 -2.0 51 164-214 120-170 (347)
132 PF05297 Herpes_LMP1: Herpesvi 26.2 22 0.00048 29.9 0.0 81 53-139 71-158 (381)
133 PF08693 SKG6: Transmembrane a 26.1 41 0.00088 19.3 1.1 19 204-222 21-39 (40)
134 COG1742 Uncharacterized conser 25.8 49 0.0011 23.4 1.6 44 176-219 62-105 (109)
135 PF05977 MFS_3: Transmembrane 24.6 5.5E+02 0.012 23.6 15.7 26 168-193 342-367 (524)
136 PRK02935 hypothetical protein; 22.5 2.9E+02 0.0063 19.6 5.1 38 182-220 22-62 (110)
137 PF11628 TCR_zetazeta: T-cell 20.5 1.6E+02 0.0034 16.1 2.6 25 37-61 7-31 (33)
138 PF11384 DUF3188: Protein of u 20.3 75 0.0016 19.1 1.5 23 200-222 27-49 (49)
139 PF15055 DUF4536: Domain of un 20.0 83 0.0018 18.8 1.6 22 203-224 8-29 (47)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.98 E-value=4e-30 Score=217.26 Aligned_cols=217 Identities=21% Similarity=0.258 Sum_probs=185.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC
Q 040323 8 LSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE 80 (228)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~ 80 (228)
.++++++.+++.|++++....++|.+++| ++++++|+++.+++++++|||++++++.++.++++|+.+...+|
T Consensus 60 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~ 139 (302)
T TIGR00817 60 ISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE 139 (302)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc
Confidence 45667899999999999999999999999 89999999999999999999999999999999999999877667
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHH----------------
Q 040323 81 PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIF---------------- 144 (228)
Q Consensus 81 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------- 144 (228)
.+.+..|+++++++++++++|.++.||.++ +++.|+.+.+.|+...+++.++|.....|.++
T Consensus 140 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (302)
T TIGR00817 140 LSFNWAGFLSAMISNITFVSRNIFSKKAMT--IKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVT 217 (302)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCch
Confidence 777788999999999999999999999863 23689999999999999998888876544210
Q ss_pred -HHHHHHHHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 145 -IVYLLLGNAT-IAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 145 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
.+...+..+. .....|...+.+++++||+++++.+++||+++++.|++++||++|..+++|+++++.|+.+|++.|+|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 218 KIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 1111323333 33345556678999999999999999999999999999999999999999999999999999988877
Q ss_pred hccc
Q 040323 223 FKIS 226 (228)
Q Consensus 223 ~~~~ 226 (228)
|+..
T Consensus 298 ~~~~ 301 (302)
T TIGR00817 298 KPKP 301 (302)
T ss_pred CcCC
Confidence 6643
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.97 E-value=3.2e-29 Score=215.58 Aligned_cols=212 Identities=24% Similarity=0.305 Sum_probs=185.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCC
Q 040323 9 SQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEP 81 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~ 81 (228)
++++++++++.|+++.......+.++++ ++++++|+++++++++++|||++++++.+++++++|+.+...+|.
T Consensus 110 ~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~ 189 (350)
T PTZ00343 110 LKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL 189 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc
Confidence 4568899999999988765556666665 999999999999999999999999999999999999999988888
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhccc---ccCChHHHHHHhhHHHHHHHHHHHHHHhHH---------------
Q 040323 82 LFYLLGFLVCIGSTTRRASKYAIQQILLTSKA---EKINFMNLLVYMAPMAASIFLPFTLYIEGI--------------- 143 (228)
Q Consensus 82 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------- 143 (228)
++++.|++++++|++++++|+++.|+.+++++ ++.++.+...++.+.++++++|..+..|.+
T Consensus 190 ~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~ 269 (350)
T PTZ00343 190 HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTN 269 (350)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccc
Confidence 88899999999999999999999999876432 247788888888999999999887755431
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323 144 ----FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV 219 (228)
Q Consensus 144 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~ 219 (228)
..++.++.+++..++.|.+.+.++++++|.++++.+++||+++++.|++++||++|+.+++|.++++.|+.+|++.
T Consensus 270 ~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 270 YTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 1234566778888888888899999999999999999999999999999999999999999999999999999986
Q ss_pred h
Q 040323 220 K 220 (228)
Q Consensus 220 k 220 (228)
|
T Consensus 350 k 350 (350)
T PTZ00343 350 K 350 (350)
T ss_pred C
Confidence 4
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.97 E-value=3.3e-32 Score=227.32 Aligned_cols=225 Identities=35% Similarity=0.509 Sum_probs=206.0
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhh
Q 040323 2 SRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIV 74 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~ 74 (228)
+|.+..+++.+++.++++|++++.+..++|.++.+ ++|+++|+++.++++++.+|+++++.+.++.+++.|+.
T Consensus 72 ~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ 151 (316)
T KOG1441|consen 72 VPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVA 151 (316)
T ss_pred CCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEE
Confidence 45566667789999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHH-HHHHHHhHHH---------
Q 040323 75 LASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFL-PFTLYIEGIF--------- 144 (228)
Q Consensus 75 l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~--------- 144 (228)
+.+.+|.++|+.|.+.++.+.+..++++++.|+.+++++++.|+.++++|+.+.+...++ |.....|++.
T Consensus 152 ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~ 231 (316)
T KOG1441|consen 152 IASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPW 231 (316)
T ss_pred EeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecccc
Confidence 999999999999999999999999999999999997667899999999999999999998 7665544421
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 145 --IVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
.....++..+++++.|++.|++++++||+++++.|++|+++.++.|+++|+|+.|+.+..|++++++|+.+|++.|+|
T Consensus 232 ~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~ 311 (316)
T KOG1441|consen 232 FVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK 311 (316)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 123445555999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccc
Q 040323 223 FKIS 226 (228)
Q Consensus 223 ~~~~ 226 (228)
++.+
T Consensus 312 ~~~~ 315 (316)
T KOG1441|consen 312 EKKG 315 (316)
T ss_pred hhcc
Confidence 8765
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.94 E-value=3.8e-24 Score=180.90 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=190.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323 6 TILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN 78 (228)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~ 78 (228)
+.+++.++++..+.++++.++...+|.+++| +.|++.|+++++.+++++|||++++++.++++.++|+.+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~ 136 (303)
T PF08449_consen 57 PKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTL 136 (303)
T ss_pred cCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeee
Confidence 4556678889999999999999999999999 999999999999999999999999999999999999999754
Q ss_pred CCC----cc------hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH--H-hH---
Q 040323 79 NEP----LF------YLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY--I-EG--- 142 (228)
Q Consensus 79 ~~~----~~------~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-~~--- 142 (228)
+|. +. +..|+.+.+.+.++.+.+.++++|..++ .+.++.+.++|++..+.+..++.... . |.
T Consensus 137 ~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~--~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~ 214 (303)
T PF08449_consen 137 SDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKK--YGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSA 214 (303)
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH
Confidence 431 11 1239999999999999999999999864 56888999999999998887766655 2 21
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHH
Q 040323 143 -------IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVL 215 (228)
Q Consensus 143 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~ 215 (228)
|+.+..++..++.++..+...+.++++.||++.+++..++++.++++++++||+++++.+|+|.++++.|..+
T Consensus 215 ~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 215 IRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 3456777888888888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhc
Q 040323 216 YSKVKKRFK 224 (228)
Q Consensus 216 ~~~~k~~~~ 224 (228)
|+..|+||+
T Consensus 295 ~~~~~~k~~ 303 (303)
T PF08449_consen 295 YSYAKKKKN 303 (303)
T ss_pred HHHhhccCC
Confidence 999998875
No 5
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.92 E-value=2.8e-22 Score=172.43 Aligned_cols=211 Identities=11% Similarity=0.069 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHH------hccccchHHHHHHHHHhhhhhhh
Q 040323 10 QKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLL------TCKKEFAEVYYALMPVVLVIVLA 76 (228)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~------~~~~~~~~~~~~~~l~~~G~~l~ 76 (228)
++++......|++......+.+.+++| ++.+++|+++.++++++ +|||.++++++++.++++|+.+.
T Consensus 75 ~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll 154 (358)
T PLN00411 75 VSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVV 154 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHH
Confidence 444555666666553344466777777 88999999999999999 69999999999999999999875
Q ss_pred cc-CCC-----------------------cch-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCh-HHHHHHhhHHHH
Q 040323 77 SN-NEP-----------------------LFY-LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINF-MNLLVYMAPMAA 130 (228)
Q Consensus 77 ~~-~~~-----------------------~~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 130 (228)
.. ++. ..+ ..|+.+.+.++++|+.|++++|+..+ ++++ .....++...+.
T Consensus 155 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~----~~~~~~~~t~~~~~~~~ 230 (358)
T PLN00411 155 IFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMS----EYPAAFTVSFLYTVCVS 230 (358)
T ss_pred HHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCcHhHHHHHHHHHHH
Confidence 42 111 112 45999999999999999999999853 3433 355556666665
Q ss_pred HHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 040323 131 SIFLPFTLYIEGI----------FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTV 200 (228)
Q Consensus 131 ~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~ 200 (228)
..+.+.....|.. ...+.+++.++.....+..+++++++.+|.++++..+++|+++++.|++++||++++
T Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~ 310 (358)
T PLN00411 231 IVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYL 310 (358)
T ss_pred HHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcH
Confidence 5555444443321 011224444444444455567899999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhhhhhhc
Q 040323 201 MGMTEFVVTTMIAVLYSKVKKRFK 224 (228)
Q Consensus 201 ~~~~G~~l~~~g~~~~~~~k~~~~ 224 (228)
.+++|+++++.|+.+.++.|+||.
T Consensus 311 ~~~iG~~LIl~Gv~l~~~~~~~~~ 334 (358)
T PLN00411 311 GCLIGGILITLGFYAVMWGKANEE 334 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999988776653
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.92 E-value=2.2e-22 Score=169.52 Aligned_cols=179 Identities=11% Similarity=-0.003 Sum_probs=138.9
Q ss_pred HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCC-----------cchHHHHHHHHHHHHHHHHHHHHH
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEP-----------LFYLLGFLVCIGSTTRRASKYAIQ 105 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~-----------~~~~~G~~~~l~s~~~~a~~~v~~ 105 (228)
++.++.|+++.+++++++|||++++++.++.++++|+++...++. +.+..|+++++.++++|+.|.++.
T Consensus 96 ~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~ 175 (295)
T PRK11689 96 MVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVT 175 (295)
T ss_pred HHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999998754332 123569999999999999999999
Q ss_pred HHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 040323 106 QILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG------IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLG 179 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 179 (228)
||.. ++.++..... ..+...+.+.....+. ++.+..+++.++.+...+..+++++++.+|.+.+...
T Consensus 176 k~~~----~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~ 248 (295)
T PRK11689 176 RKYA----RGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATAS 248 (295)
T ss_pred hhcc----CCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9983 3456655432 2223333332222221 1234344455555666667778999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 180 NAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 180 ~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
+++|+++++++++++||++++.+++|+++++.|+....+.+++
T Consensus 249 ~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~ 291 (295)
T PRK11689 249 YFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRR 291 (295)
T ss_pred HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhH
Confidence 9999999999999999999999999999999999877655443
No 7
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.90 E-value=3.3e-21 Score=162.21 Aligned_cols=209 Identities=11% Similarity=-0.041 Sum_probs=158.1
Q ss_pred ccHHHHHHHHHHHHHH-HHHHHHhHHHH-HH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323 8 LSQKQFLKIFALSAIF-CFSVVCGNTSL-RY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN 78 (228)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~ 78 (228)
+++++++.....|.+. .....+.+.+. ++ ++..+.|+++.+++++ +|||+++++++++.++++|+.+...
T Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 63 PTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 3455566666667653 23333444444 22 8889999999999986 6999999999999999999988754
Q ss_pred C-CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-------HHHHHHHH
Q 040323 79 N-EPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-------IFIVYLLL 150 (228)
Q Consensus 79 ~-~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~ 150 (228)
+ +.+.+..|++++++++++|+.+.+..||.. ++ ++.....++...++..+.+.....+. .+.+..++
T Consensus 142 ~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 216 (292)
T PRK11272 142 GGNLSGNPWGAILILIASASWAFGSVWSSRLP----LP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALG 216 (292)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHhcC----CC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHH
Confidence 3 344556899999999999999999999862 22 33445567777777776666543321 12344444
Q ss_pred HHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 151 GNATIA-YLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 151 ~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
+.++.+ ...+...++++++.++.+++...+++|+++.+++++++||++|+.+++|+++++.|+...++.++|
T Consensus 217 ~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 217 YLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444443 334445678899999999999999999999999999999999999999999999999998877665
No 8
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.89 E-value=1e-20 Score=159.75 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=139.5
Q ss_pred HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC---CcchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE---PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKA 113 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~ 113 (228)
++.++.|+++.+++++++|||+++++++++.++++|+.+...++ .+.+..|+.+++.++++|+.+.+++||..++ .
T Consensus 91 ~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~-~ 169 (299)
T PRK11453 91 LVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSH-S 169 (299)
T ss_pred HHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-c
Confidence 77899999999999999999999999999999999999876432 2335679999999999999999999997421 1
Q ss_pred ccCChHHHHHHhhHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHH
Q 040323 114 EKINFMNLLVYMAPMAASIFLPFTLYIEG------------IFIVYLLLGNATIAYLVN-LTKFLVRKHTCTLTLQVLGN 180 (228)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~ 180 (228)
.+.+......++...+...+.......|. +..++.+++.++.+.... ..+++.+++.+|.+.+...+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~ 249 (299)
T PRK11453 170 TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSL 249 (299)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 12233344445554444333332222221 123455555555544433 33457899999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhh
Q 040323 181 AKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKK 221 (228)
Q Consensus 181 ~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~ 221 (228)
++|+++.+++++++||++++.+++|+++++.|+.+..+.++
T Consensus 250 l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 250 LVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999988766554
No 9
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.89 E-value=2e-20 Score=154.48 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc-CC
Q 040323 10 QKQFLKIFALSA-IFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN-NE 80 (228)
Q Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~-~~ 80 (228)
+++++.....+. .+.....+...++++ ++.++.|+++.+++++++|||+++++++++.++++|+.+... ++
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~ 122 (260)
T TIGR00950 43 LKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN 122 (260)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc
Confidence 334444555544 455666667777777 888999999999999999999999999999999999988654 33
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHH
Q 040323 81 PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-----IFIVYLLLGNATI 155 (228)
Q Consensus 81 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~ 155 (228)
.+.+..|+.+++.++++|+.+.+..|+..+ +.+.++.....+....+.+++.+.....+. +..+..+...++.
T Consensus 123 ~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (260)
T TIGR00950 123 LSINPAGLLLGLGSGISFALGTVLYKRLVK--KEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLI 200 (260)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHhh--cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 455678999999999999999999999842 222334455546677777777776654332 1233333333433
Q ss_pred -HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHH
Q 040323 156 -AYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIA 213 (228)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~ 213 (228)
....+...++++++.++.+++...+++|+++.+++++++||++++.++.|.++++.|+
T Consensus 201 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 201 GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 3445555678999999999999999999999999999999999999999999999886
No 10
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.8e-21 Score=158.97 Aligned_cols=217 Identities=18% Similarity=0.262 Sum_probs=190.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCC
Q 040323 9 SQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEP 81 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~ 81 (228)
.++..|+++|.+++|.+++..+..+++| ++|..+|+++++.+.+++|.|++++.+.++....+|......+|.
T Consensus 73 ~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~ 152 (314)
T KOG1444|consen 73 DLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL 152 (314)
T ss_pred ChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc
Confidence 4667899999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-H------------HHHHH
Q 040323 82 LFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-I------------FIVYL 148 (228)
Q Consensus 82 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~------------~~~~~ 148 (228)
+++..|+.|++...++.+.+.+..||..+ ..+.+.+++++|.+..+.+.+.....+++. + .++..
T Consensus 153 sf~~~gY~w~~~n~~~~a~~~v~~kk~vd--~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~ 230 (314)
T KOG1444|consen 153 SFNLRGYSWALANCLTTAAFVVYVKKSVD--SANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVV 230 (314)
T ss_pred eecchhHHHHHHHHHHHHHHHHHHHHhhc--cccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHH
Confidence 99988999999999999999999999876 456899999999999998887776654432 1 24678
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhcccC
Q 040323 149 LLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKIST 227 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~~~~ 227 (228)
+.++|++++..+++.++|.+..|+++.++++..+...+.+.+.+++|++.++..++|..+.++|.+.|+..++|++.++
T Consensus 231 ~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 231 MLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 8999999999999999999999999999999444455555555555788999999999999999999999987776543
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.87 E-value=8.7e-20 Score=153.85 Aligned_cols=192 Identities=8% Similarity=0.035 Sum_probs=141.6
Q ss_pred HHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCCcchHHHHHHHHH
Q 040323 21 AIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIG 93 (228)
Q Consensus 21 ~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~ 93 (228)
+.......+.+.++++ ++..+.|+++.+++++++|||++++++.++.++++|+.+...++.+. ..++++
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~ 156 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALG 156 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHH
Confidence 3444456666666666 88899999999999999999999999999999999999875332221 246888
Q ss_pred HHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH----Hh-HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 040323 94 STTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY----IE-GIF-IVYLLLGNATIAYLVNLTKFLVR 167 (228)
Q Consensus 94 s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
++++|+.|.+..|+..+ ++..+......++.+.+.....+.... .+ .+. .+..+...++.+...+.+.++.+
T Consensus 157 aa~~~a~~~i~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~ 234 (296)
T PRK15430 157 LAFSFAFYGLVRKKIAV--EAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAA 234 (296)
T ss_pred HHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988732 122333444455555555443222110 00 112 22334444445556667788999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323 168 KHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 168 ~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~ 218 (228)
++.+|.+.+...+++|+++.++|++++||++++.+++|+++++.|+.+...
T Consensus 235 ~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 235 TRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888877654
No 12
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.87 E-value=2.3e-20 Score=158.03 Aligned_cols=209 Identities=14% Similarity=0.107 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC--
Q 040323 10 QKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE-- 80 (228)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~-- 80 (228)
++++ +-+.++++=..++.+.+.+++| ++..+.-+++++++++++|+|+++.+++|+++.++|+.+...+|
T Consensus 77 ~~~w-~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 77 RPWW-KYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 4444 4566688888888889999998 77778888999999999999999999999999999998864433
Q ss_pred -------CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHH---------H
Q 040323 81 -------PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGI---------F 144 (228)
Q Consensus 81 -------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~ 144 (228)
.+....|+++++.++.+||++++++|+..+ +.+..+.++....++.++..+.....|.. +
T Consensus 156 ~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~----~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~ 231 (334)
T PF06027_consen 156 SGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVK----KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQ 231 (334)
T ss_pred ccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChh
Confidence 123479999999999999999999999863 46788899999999998888877766653 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323 145 IVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~ 223 (228)
.....+..+++-+..+...-..++..||+..++...+.+++++++++++||+++++..++|.++++.|...|+..++++
T Consensus 232 ~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 232 VIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 3334444454445554444567899999999999999999999999999999999999999999999999998765543
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.86 E-value=3.1e-19 Score=150.30 Aligned_cols=204 Identities=16% Similarity=0.057 Sum_probs=148.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc---
Q 040323 9 SQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN--- 78 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~--- 78 (228)
++++++..+..|+.+.....+...++++ ++..+.|+++.+++ +||+++.+ ++.++++|+.+...
T Consensus 67 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~~--~~~i~~~Gv~li~~~~~ 140 (293)
T PRK10532 67 AKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDFV--WVVLAVLGLWFLLPLGQ 140 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHHH--HHHHHHHHHheeeecCC
Confidence 3455666777777766666666777777 67788999998776 36665444 45677899887542
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-----HHHHHHHHHHH
Q 040323 79 NEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-----IFIVYLLLGNA 153 (228)
Q Consensus 79 ~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~ 153 (228)
++.+.+..|+++++.++++|+.|.+..||.. ++.++... .++...++..+.|.....+. +..+...+..+
T Consensus 141 ~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~----~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lg 215 (293)
T PRK10532 141 DVSHVDLTGAALALGAGACWAIYILSGQRAG----AEHGPATV-AIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVA 215 (293)
T ss_pred CcccCChHHHHHHHHHHHHHHHHHHHHHHHh----ccCCchHH-HHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHH
Confidence 2233456799999999999999999999984 23555554 45556666666666554332 11222223344
Q ss_pred HHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323 154 TIAYL-VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 154 ~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~ 223 (228)
+.+.. .+..+++.+++.+|.++++..+++|+++.+++++++||++++.+++|+++++.|+..+++.++||
T Consensus 216 v~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~ 286 (293)
T PRK10532 216 ILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE 286 (293)
T ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44333 33345788999999999999999999999999999999999999999999999999998776554
No 14
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.85 E-value=2.4e-20 Score=151.93 Aligned_cols=213 Identities=17% Similarity=0.317 Sum_probs=196.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC
Q 040323 7 ILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN 79 (228)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~ 79 (228)
..+++++|...|.|+.-+..++++|.++.| +.|+..++|+.+++..|.-||+++.-..-+.++-+|+++.++.
T Consensus 78 ~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K 157 (349)
T KOG1443|consen 78 LSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK 157 (349)
T ss_pred CcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec
Confidence 357889999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCChHHHHHHhhHHHHHHHHHHHHHHhHH---------------
Q 040323 80 EPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKA-EKINFMNLLVYMAPMAASIFLPFTLYIEGI--------------- 143 (228)
Q Consensus 80 ~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------- 143 (228)
+.+++..|..+..+++++.+++-.+.+.++++++ .+.+|...+++..+.....++|....+|++
T Consensus 158 sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~ 237 (349)
T KOG1443|consen 158 STQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTG 237 (349)
T ss_pred ccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCcc
Confidence 9999999999999999999999999999988765 678999999999999999999988887763
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323 144 ---FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV 219 (228)
Q Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~ 219 (228)
.....+.+.|..+++...+.+....+++..+.|+.+..|.+.+.+.+....+|++|..++.|..++..|+..|...
T Consensus 238 ~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~ 316 (349)
T KOG1443|consen 238 LILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNE 316 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccC
Confidence 1234677888899999999999999999999999999999999999999999999999999999999999999443
No 15
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.84 E-value=3.1e-19 Score=149.43 Aligned_cols=207 Identities=8% Similarity=-0.044 Sum_probs=143.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC-
Q 040323 9 SQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE- 80 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~- 80 (228)
+++.+......+........+.+.++++ .+..+.|+++.+++++++|||+++++++++.+++.|+.+...++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~ 138 (281)
T TIGR03340 59 PATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF 138 (281)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 3333433344444444555556666666 77788999999999999999999999999999999999865433
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHh------HH-HHHHHHHHHH
Q 040323 81 PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIE------GI-FIVYLLLGNA 153 (228)
Q Consensus 81 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~-~~~~~~~~~~ 153 (228)
.+.+..|+.+++.++++|+.|.+..|+..++.+...+......++....+..+.+.....+ .+ ..+..+...+
T Consensus 139 ~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (281)
T TIGR03340 139 AQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGG 218 (281)
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 3345678889999999999999988875321010112222222222222111111111111 11 1233344555
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHH
Q 040323 154 TIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVL 215 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~ 215 (228)
+.+...+...++.+++.++.+.+...+++|+++.+.|++++||+++..+++|+++++.|+.+
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 55555666778899999999999999999999999999999999999999999999999864
No 16
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.2e-21 Score=157.13 Aligned_cols=216 Identities=19% Similarity=0.195 Sum_probs=192.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC
Q 040323 8 LSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE 80 (228)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~ 80 (228)
-+-+..++++|+++.|.+++.++|.|++| +-|+++-+|+.++.++++|||.+.....++.+++.|--+-..-|
T Consensus 97 ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE 176 (347)
T KOG1442|consen 97 LDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE 176 (347)
T ss_pred ccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence 34567889999999999999999999999 88999999999999999999999999999999999987765433
Q ss_pred ---CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH------------HHH
Q 040323 81 ---PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG------------IFI 145 (228)
Q Consensus 81 ---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~ 145 (228)
...++.|.+++..|+++-|+..+++||.+. .....-+.+.+|++..+.++++|.....+. .++
T Consensus 177 ~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~--~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~F 254 (347)
T KOG1442|consen 177 GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLP--PVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKF 254 (347)
T ss_pred cccCccchhhhHHHHHHHHHHHHHHHhhheecc--cccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHH
Confidence 456799999999999999999999998753 345677889999999999999998765321 246
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhcc
Q 040323 146 VYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKI 225 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~~ 225 (228)
|..+.++|+++|..++...+-+|.+||+++++.+..|.+...++++.+++|.-+..-|.|-++++.|...|++.|++|++
T Consensus 255 w~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~ 334 (347)
T KOG1442|consen 255 WILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMR 334 (347)
T ss_pred HHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHH
Confidence 88999999999999998888999999999999999999999999999999999999999999999999999999877644
No 17
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.78 E-value=3.1e-16 Score=130.69 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=145.4
Q ss_pred HHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHH-HHhccccchHHHHHHHHHhhhhhhhccCCCcc---hHHHHHH
Q 040323 22 IFCFSVVCGNTSLRY-------AVGAATLFFNAISTF-LLTCKKEFAEVYYALMPVVLVIVLASNNEPLF---YLLGFLV 90 (228)
Q Consensus 22 ~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~-l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~~---~~~G~~~ 90 (228)
.+.........+.++ .+.++.|+++.++++ +++|||++++++.++.+.+.|+.+....+... +..|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~ 158 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLL 158 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHH
Confidence 333344444444554 888999999999997 77799999999999999999999987655433 3589999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCChHHHHH-HhhHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHH-HHHHHHH
Q 040323 91 CIGSTTRRASKYAIQQILLTSKAEKINFMNLLV-YMAPMAASIFLPFTLYIE----GIFIVYLLLGNATIAY-LVNLTKF 164 (228)
Q Consensus 91 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~ 164 (228)
++.++++++++.+..|+.. +.++..... ++.........+...... ....+......++.+. ..+...+
T Consensus 159 ~l~a~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (292)
T COG0697 159 ALAAALLWALYTALVKRLS-----RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWY 233 (292)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999873 345555554 333322222222222111 1123444555555555 3556667
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323 165 LVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 165 ~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k 220 (228)
...++.++...+...+.+|+.+.+++++++||+++..+++|+.+++.|+...+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~ 289 (292)
T COG0697 234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRA 289 (292)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999999999999999999999999999999999999988773
No 18
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.76 E-value=3.3e-17 Score=124.81 Aligned_cols=132 Identities=33% Similarity=0.563 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc---cccCChHHHHHHhhHHHHHHHHHHHHHHhHH------------------HH
Q 040323 87 GFLVCIGSTTRRASKYAIQQILLTSK---AEKINFMNLLVYMAPMAASIFLPFTLYIEGI------------------FI 145 (228)
Q Consensus 87 G~~~~l~s~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------~~ 145 (228)
|..+++.|.++.+++.++.|+.++++ +++.++.++++|+.+.+.++++|..+..|.+ +.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999998752 3689999999999999999999988765542 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323 146 VYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~ 218 (228)
+..++.+++.+++.|++.+.+++++||+++++.+..|.+..++.|+++|||++|..+++|.++++.|...|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5678889999999999999999999999999999999999999999999999999999999999999999974
No 19
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.3e-17 Score=130.19 Aligned_cols=206 Identities=17% Similarity=0.123 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC-------
Q 040323 15 KIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE------- 80 (228)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~------- 80 (228)
.-...++.|.+.+..+|.+++| +-+++.|+-+++++.++.+++.+|+++..++.+++|+.+..+.+
T Consensus 87 ~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e 166 (337)
T KOG1580|consen 87 MYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAE 166 (337)
T ss_pred HHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCc
Confidence 3566678888999999999999 77899999999999999999999999999999999999987653
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH----HhH-------HHHHHHH
Q 040323 81 PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY----IEG-------IFIVYLL 149 (228)
Q Consensus 81 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~-------~~~~~~~ 149 (228)
.+..-.|-++.++|....++-...++|... ..+-+.-.+|.+++..+.+.+....++ ||. |..+|-+
T Consensus 167 ~~t~g~GElLL~lSL~mDGlTg~~Qdrira--~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l 244 (337)
T KOG1580|consen 167 DKTFGFGELLLILSLAMDGLTGSIQDRIRA--SYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDL 244 (337)
T ss_pred ccccchHHHHHHHHHHhcccchhHHHHHHH--hhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHH
Confidence 122347889999999999999999988753 245677888999999998876555443 221 4567878
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 150 LGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
.+.++.+...+++.+..+...+|++.|++...++.++++.++++|+++++..||+|.++++.|...-....++
T Consensus 245 ~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 245 TLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred HHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 8888888899999999999999999999999999999999999999999999999999999998876655443
No 20
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.5e-15 Score=122.72 Aligned_cols=215 Identities=15% Similarity=0.133 Sum_probs=182.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC
Q 040323 7 ILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN 79 (228)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~ 79 (228)
.+.++++.+....++....+-.++..++.| +.|++--+-+++.+.+++|+|+++.+++...++..|+.+....
T Consensus 77 ~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~ 156 (327)
T KOG1581|consen 77 LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLF 156 (327)
T ss_pred CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEe
Confidence 444445556667788888888888999998 7788877778999999999999999999999999999875321
Q ss_pred ---C------CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHH-----------H
Q 040323 80 ---E------PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTL-----------Y 139 (228)
Q Consensus 80 ---~------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~ 139 (228)
| .+.++.|+.++.......++-+..+++..+ .-+++++.+|++++..+++....... .
T Consensus 157 ~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~--~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~ 234 (327)
T KOG1581|consen 157 PNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFK--KYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFI 234 (327)
T ss_pred cCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhc--cCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHH
Confidence 1 234689999999999999999999999986 46799999999999999887554322 2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323 140 IEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV 219 (228)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~ 219 (228)
.|.|++++-+.+.+.++...+...++.+++.+|.+.+.+..++.+++++++.+.||.+++..||.|..+++.|+.+-...
T Consensus 235 ~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~ 314 (327)
T KOG1581|consen 235 KEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILL 314 (327)
T ss_pred HcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHH
Confidence 34467788778888888889988999999999999999999999999999999999999999999999999999887776
Q ss_pred hhhh
Q 040323 220 KKRF 223 (228)
Q Consensus 220 k~~~ 223 (228)
|+|+
T Consensus 315 k~~~ 318 (327)
T KOG1581|consen 315 KKKK 318 (327)
T ss_pred HHhc
Confidence 6664
No 21
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.70 E-value=1.6e-14 Score=121.42 Aligned_cols=174 Identities=12% Similarity=0.078 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHHHhccccchHH----HHHHHHHhhhhhhhccCC-C--c----ch-HHHHHHHHHHHHHHHHHHHHHH
Q 040323 39 GAATLFFNAISTFLLTCKKEFAEV----YYALMPVVLVIVLASNNE-P--L----FY-LLGFLVCIGSTTRRASKYAIQQ 106 (228)
Q Consensus 39 ~~~~Pv~~~il~~l~~~~~~~~~~----~~~~~l~~~G~~l~~~~~-~--~----~~-~~G~~~~l~s~~~~a~~~v~~~ 106 (228)
..+.|++..+++.+++|||.++++ .+++.++++|+.+....+ . + .+ ..|+.++++|+++|+.|.+..|
T Consensus 93 ~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~ 172 (290)
T TIGR00776 93 TGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAK 172 (290)
T ss_pred HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 348888999999999999999999 999999999999865322 1 1 33 6899999999999999999999
Q ss_pred HHhhcccccCChHHHHHHh---hHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHH
Q 040323 107 ILLTSKAEKINFMNLLVYM---APMAASIFLPFT---LYIEGIFIVYLLLGNATIAYLVNLTKFLVRK-HTCTLTLQVLG 179 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~ 179 (228)
+. +.|+.+....+ ...++.+..+.. .... ++..+.....|+.....+..++...+ +.++.+.+++.
T Consensus 173 ~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls 245 (290)
T TIGR00776 173 AF------GVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLK-KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLS 245 (290)
T ss_pred Hc------CCCcceehhHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHH
Confidence 75 26666663333 333333333322 1111 22233333366665555555667788 99999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccccch----hHHHHHHHHHHHHHhh
Q 040323 180 NAKAALAAVVLVMIFKNPVTVMGM----TEFVVTTMIAVLYSKV 219 (228)
Q Consensus 180 ~~~~v~~~v~~~~~~ge~~s~~~~----~G~~l~~~g~~~~~~~ 219 (228)
+.+|+.+.+++++++||+.++.|+ +|+++++.|+.+....
T Consensus 246 ~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 246 QLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999 9999999999876554
No 22
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.70 E-value=2.2e-16 Score=123.75 Aligned_cols=214 Identities=14% Similarity=0.201 Sum_probs=187.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCC
Q 040323 9 SQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEP 81 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~ 81 (228)
|....|++.|.+++....+..+..+++| +.+.++-+.++..+.+++|.|.+.....+..+.++.-+...++|.
T Consensus 64 R~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~ 143 (309)
T COG5070 64 RLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ 143 (309)
T ss_pred ehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence 3456888999999999999999999999 888999999999999999999999999999999998888888875
Q ss_pred c--------chHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHH----------
Q 040323 82 L--------FYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGI---------- 143 (228)
Q Consensus 82 ~--------~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------- 143 (228)
+ .+ .|++|+...++..+.+....|+..+ -.+....+.++|.+..+.++++...+..|..
T Consensus 144 q~~~~~~~~lN-~GY~Wm~~NclssaafVL~mrkri~--ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~ 220 (309)
T COG5070 144 QASAFKAQILN-PGYLWMFTNCLSSAAFVLIMRKRIK--LTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLS 220 (309)
T ss_pred hHHHHHhcccC-CceEEEehhhHhHHHHHHHHHHhhc--ccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCC
Confidence 3 34 6999999999999999999988754 2346677889999999999988888776641
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 144 -FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
+....+..+|++++...++.-|+.+.++.++.|+++.+++....+.|.++|||+.+.+.+....+-.+....|...|++
T Consensus 221 ~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~ 300 (309)
T COG5070 221 VDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSK 300 (309)
T ss_pred hHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred hcc
Q 040323 223 FKI 225 (228)
Q Consensus 223 ~~~ 225 (228)
++.
T Consensus 301 k~q 303 (309)
T COG5070 301 KQQ 303 (309)
T ss_pred HHh
Confidence 544
No 23
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.68 E-value=1.4e-15 Score=127.37 Aligned_cols=210 Identities=12% Similarity=0.111 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC
Q 040323 11 KQFLKIFALSAIFCF----SVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN 79 (228)
Q Consensus 11 ~~~~~~~~~~~~~~~----~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~ 79 (228)
...++....+++||. .....|.++.+ ++-++.-+|+..++.++..||+++.+.+++++.+.|+++...+
T Consensus 153 ~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~ 232 (416)
T KOG2765|consen 153 LTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG 232 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence 345566777777775 55556666666 7778899999999999999999999999999999999998655
Q ss_pred C--------CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH--------H
Q 040323 80 E--------PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG--------I 143 (228)
Q Consensus 80 ~--------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~ 143 (228)
| .+....|+++++++++.||+|.++.||..++.+++.|--.+.++...+..+++.|...+.+. |
T Consensus 233 ~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP 312 (416)
T KOG2765|consen 233 DSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELP 312 (416)
T ss_pred cccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCC
Confidence 2 23348999999999999999999999987654468899999999999998888877665332 1
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323 144 ---FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k 220 (228)
++...+.-+.+..+...+.+.++.-.++|+++++...++...+++...++-|.++|+.+++|.+.++.|....|+..
T Consensus 313 ~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 313 SSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred CCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 22334444455566677878788889999999999999999999999999999999999999999999999988754
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.67 E-value=3e-14 Score=117.66 Aligned_cols=168 Identities=8% Similarity=-0.050 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCCcchHHHH
Q 040323 16 IFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGF 88 (228)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~ 88 (228)
....+++......+...++++ ++..++|+++++++++++|||+++++++++.++++|+.+...++.+.+
T Consensus 73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~---- 148 (256)
T TIGR00688 73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP---- 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----
Confidence 444555555555666666666 788999999999999999999999999999999999998754322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHH
Q 040323 89 LVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIE--------GIFIVYLLLGNATIAYLVN 160 (228)
Q Consensus 89 ~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 160 (228)
.+++.++++|+.|.+..|+..+ .+..+..... ........+.....+ .+..|..++..++.+...+
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~ 222 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKN-----TDLAGFCLET-LSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPL 222 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC-----CCcchHHHHH-HHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHH
Confidence 3578899999999999998731 1222222211 111111111111111 1123445555556666677
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q 040323 161 LTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMI 193 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~ 193 (228)
...+..+++.+|.+++...+++|+++.+++++.
T Consensus 223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 778899999999999999999999999999764
No 25
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.58 E-value=1.5e-12 Score=106.37 Aligned_cols=178 Identities=13% Similarity=0.052 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCh
Q 040323 39 GAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINF 118 (228)
Q Consensus 39 ~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~ 118 (228)
-...|++..+++++|+|||.++.|++++.++.+|+..-.....+.++.. +.=+++|+.|...-|+. ++|+
T Consensus 105 Y~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwva----l~la~sf~~Ygl~RK~~------~v~a 174 (293)
T COG2962 105 YFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVA----LALALSFGLYGLLRKKL------KVDA 174 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHH----HHHHHHHHHHHHHHHhc------CCch
Confidence 3668999999999999999999999999999999998776666666543 33456889998887664 5777
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 040323 119 MNLLVYMAPMAASIFLPFTLYIE---------GIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVV 189 (228)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~ 189 (228)
.+-.......-.+..+......+ .+..+.++++.|.++..-=.......|+.+=.+.++..|.+|....++
T Consensus 175 ~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fll 254 (293)
T COG2962 175 LTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLL 254 (293)
T ss_pred HHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 66665555444433333322222 123567778888777665455557788999999999999999999999
Q ss_pred HHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhccc
Q 040323 190 LVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKIS 226 (228)
Q Consensus 190 ~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~~~ 226 (228)
+++++||+++..+....+++-+|...|..+..+++.+
T Consensus 255 av~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 255 AVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999877655443
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.58 E-value=8.7e-13 Score=108.00 Aligned_cols=192 Identities=18% Similarity=0.186 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC---
Q 040323 11 KQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE--- 80 (228)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~--- 80 (228)
+...+...-+++|...+-....++++ +++.+..+++++++++++|+|.+++||.++.+.+.|+.+...++
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 33445555588899988888888888 88899999999999999999999999999999999999853211
Q ss_pred ------C--------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH----
Q 040323 81 ------P--------LFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG---- 142 (228)
Q Consensus 81 ------~--------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 142 (228)
. +....|+...+.++++.++..++.+|.+|++ +.+.+.-.......+.++.++.....+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~--~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS--NVSLWIQNMQLYLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 0 1236899999999999999999999999753 3555555444455555554444333221
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHH
Q 040323 143 ---------IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVV 208 (228)
Q Consensus 143 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l 208 (228)
+..|..+...++.+... -..+|+.|...-+.......+++.+.++.+||.++|....+|..+
T Consensus 173 ~~g~f~G~~~~~~~~i~~~a~gGllv----a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 173 ESGFFHGYSWWVWIVIFLQAIGGLLV----AFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred cCCchhhcchHHHHHHHHHHHhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 12344445555444444 345899999999999999999999999999999999999999765
No 27
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.57 E-value=8e-13 Score=105.63 Aligned_cols=213 Identities=16% Similarity=0.080 Sum_probs=155.9
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhh
Q 040323 2 SRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIV 74 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~ 74 (228)
||..+.-.+++++.+...|...++++...+.++.. .+-.+-|+.+.. +..+|. +..+-+.+.+.|+.
T Consensus 60 RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~----~~sRr~--~d~vwvaLAvlGi~ 133 (292)
T COG5006 60 RPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVAL----LSSRRL--RDFVWVALAVLGIW 133 (292)
T ss_pred hHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHH----Hhccch--hhHHHHHHHHHHHH
Confidence 45554555566777777777777777777777776 566778876543 334444 34444556778887
Q ss_pred hhccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-----HHHH
Q 040323 75 LASNN---EPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-----IFIV 146 (228)
Q Consensus 75 l~~~~---~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~ 146 (228)
+.... ..+.|+.|..+++.+..+|+.|.+..||. ....+...-+..-+.+++++.+|+...... |...
T Consensus 134 lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~----g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll 209 (292)
T COG5006 134 LLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRA----GRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLL 209 (292)
T ss_pred hheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchh----cccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHH
Confidence 75432 25678999999999999999999999987 334566666667777888888887764322 3344
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhc
Q 040323 147 YLLLGNATIAYLVNLT-KFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFK 224 (228)
Q Consensus 147 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~ 224 (228)
...+..++++....|+ -..+++|.++-++++..++||.++.+.|++++||.+|..||.|++.++.+....++..+|+.
T Consensus 210 ~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 210 PLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 4444445555444443 35679999999999999999999999999999999999999999999999988777655543
No 28
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.57 E-value=3.8e-14 Score=114.18 Aligned_cols=214 Identities=15% Similarity=0.110 Sum_probs=175.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323 5 KTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS 77 (228)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~ 77 (228)
|..++..++|.-..++.+..+.+..+|-|+.| +.+.+.-+-+++.+.++.++|..+..+++..+.++|+.+.+
T Consensus 98 ~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FT 177 (367)
T KOG1582|consen 98 QTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFT 177 (367)
T ss_pred cccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhh
Confidence 34456667888888999999999999999988 88888888889999999999999999999999999999987
Q ss_pred cCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH-Hh----------H
Q 040323 78 NNE----PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY-IE----------G 142 (228)
Q Consensus 78 ~~~----~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----------~ 142 (228)
..| +++|..|+.+.-++.++.|.-...+++.++. .+-+..++++|.-.++.+.++..... .| .
T Consensus 178 LADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~--~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaeh 255 (367)
T KOG1582|consen 178 LADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKM--NPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEH 255 (367)
T ss_pred hcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhh--CCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhC
Confidence 654 5678899999999999999999999988764 34566777777777776655433322 22 1
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323 143 IF-IVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 143 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k 220 (228)
|. .....++-+..++....+....++..+|.+...+...++..++++|+++|..|+|.+...|..++..|+++--..|
T Consensus 256 p~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 256 PVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred cHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 22 3445555566677766666778999999999999999999999999999999999999999999999998765544
No 29
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.56 E-value=8.5e-15 Score=118.13 Aligned_cols=210 Identities=16% Similarity=0.193 Sum_probs=166.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc--
Q 040323 9 SQKQFLKIFALSAIFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN-- 78 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~-- 78 (228)
++.+.|.....-..|......+|.++.+ +.|+-.++.+++.++++.|+|.+.+|+.++++..+|+.+.+.
T Consensus 60 ~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s 139 (330)
T KOG1583|consen 60 PKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFS 139 (330)
T ss_pred CCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeec
Confidence 3334444444455566677778888888 889999999999999999999999999999999999998432
Q ss_pred -CCCc------------ch----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHH--H
Q 040323 79 -NEPL------------FY----LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTL--Y 139 (228)
Q Consensus 79 -~~~~------------~~----~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 139 (228)
.|.. .+ ..|+.+...+.+..|.-.++++...++++ -++.|.++|....+.+.++...- .
T Consensus 140 ~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG--Kh~~EalFytH~LsLP~Flf~~~div 217 (330)
T KOG1583|consen 140 SKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG--KHWKEALFYTHFLSLPLFLFMGDDIV 217 (330)
T ss_pred CcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHhccchHHHhcchHH
Confidence 2210 11 36777777788888888888888766444 47889999999888666544321 0
Q ss_pred --------HhH----------HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 040323 140 --------IEG----------IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVM 201 (228)
Q Consensus 140 --------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~ 201 (228)
.|. |..|+.+.++++..+.+.-..+.+..++++++++++-.+++.++.+.|+..|+++++++
T Consensus 218 ~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~ 297 (330)
T KOG1583|consen 218 SHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW 297 (330)
T ss_pred HHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH
Confidence 110 34688899999888887776677778999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhh
Q 040323 202 GMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 202 ~~~G~~l~~~g~~~~~~~k 220 (228)
+|+|.++++.|...|+...
T Consensus 298 h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 298 HWLGAALVFFGTLLFANVW 316 (330)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997543
No 30
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.49 E-value=2.9e-14 Score=114.64 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=150.5
Q ss_pred HHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc-----cCCC---------cch
Q 040323 26 SVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS-----NNEP---------LFY 84 (228)
Q Consensus 26 ~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~-----~~~~---------~~~ 84 (228)
+.....++++| ++...+|+++.+++|.++|||+++...++..+.+.|++++. .+|. +.+
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~ 189 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYD 189 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccccc
Confidence 44445566666 77799999999999999999999999999999999999853 2221 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHH-HHh--HH---HHHHHHHHHHHHHHH
Q 040323 85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTL-YIE--GI---FIVYLLLGNATIAYL 158 (228)
Q Consensus 85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~---~~~~~~~~~~~~~~~ 158 (228)
..|...++.+.+..|.-.++.|+. +++.+....+.|-..++.+..+.... ..+ .| ..+++.+..|+.++.
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~i----Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfi 265 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYI----GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFI 265 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHh----hccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhH
Confidence 578888888888888777788777 45666666666666666555443322 122 22 346677777888999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323 159 VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~ 223 (228)
.+......+++-.|-..++..+..-+++.++.+++|||.++++.|.|+++++...++....|..+
T Consensus 266 gQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 266 GQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred HHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence 98888888888777788999999999999999999999999999999999999988877666544
No 31
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.36 E-value=5.2e-10 Score=93.97 Aligned_cols=204 Identities=16% Similarity=0.119 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc---cC--C-
Q 040323 14 LKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS---NN--E- 80 (228)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~---~~--~- 80 (228)
.+...-++.|..-+-...+++.+ +...+.-+.++++.+++++||.+++||.++.+...|+.+.- .+ +
T Consensus 93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a 172 (345)
T KOG2234|consen 93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA 172 (345)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 34444467777755455555555 56677788899999999999999999999999999999864 11 1
Q ss_pred -----CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH------------H
Q 040323 81 -----PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG------------I 143 (228)
Q Consensus 81 -----~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~ 143 (228)
.+..+.|....+.+++..++..++.+|.+++ .+.+.+.-.--...++.++.+......+. +
T Consensus 173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~--s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s 250 (345)
T KOG2234|consen 173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKG--SNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYS 250 (345)
T ss_pred cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCcccccc
Confidence 2234799999999999999999999999864 34444444333334444443332221111 1
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 144 -FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
..|..++..++.|.+..+ .+|+.|...-........+++.+.++.+||-++|....+|..+++.++..|+..+.+
T Consensus 251 ~~vw~vVl~~a~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 251 SIVWLVVLLNAVGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHHHHHhccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 235566666666665543 478888888888888899999999999999999999999999999999999977665
Q ss_pred h
Q 040323 223 F 223 (228)
Q Consensus 223 ~ 223 (228)
+
T Consensus 327 ~ 327 (345)
T KOG2234|consen 327 D 327 (345)
T ss_pred c
Confidence 4
No 32
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.35 E-value=6.4e-11 Score=96.16 Aligned_cols=180 Identities=13% Similarity=0.157 Sum_probs=146.2
Q ss_pred HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC----------CcchHHHHHHHHHHHHHHHHHHHHHH
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE----------PLFYLLGFLVCIGSTTRRASKYAIQQ 106 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~----------~~~~~~G~~~~l~s~~~~a~~~v~~~ 106 (228)
++|...-+|+.+++.-+++++.+.+||+++..++.|++.....| -+.-..|+++.+.+.+.-|.+.++.+
T Consensus 117 MlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Ee 196 (372)
T KOG3912|consen 117 MLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEE 196 (372)
T ss_pred HhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999864432 12236899999999999999999999
Q ss_pred HHhhcccccCChHHHHHHhhHHHHHHHHHHHH----HHhH------H------------------HHHHHHHHHHHHHHH
Q 040323 107 ILLTSKAEKINFMNLLVYMAPMAASIFLPFTL----YIEG------I------------------FIVYLLLGNATIAYL 158 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~------~------------------~~~~~~~~~~~~~~~ 158 (228)
|.+++ .+.+|.+..+|+..++.+++-.... ...+ + .....+....+...+
T Consensus 197 k~l~~--~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAf 274 (372)
T KOG3912|consen 197 KQLKK--SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAF 274 (372)
T ss_pred hhhhh--ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheee
Confidence 99864 5699999999999999655432221 1111 0 112222333334445
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323 159 VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~ 218 (228)
.|+......|..|+++-.+....+.....+.+.....|.+...|+.|.++.+.|+..||-
T Consensus 275 fNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 275 FNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred eeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888889999999999999999999999999999999999999999999999999973
No 33
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.16 E-value=4.2e-10 Score=91.05 Aligned_cols=170 Identities=12% Similarity=0.035 Sum_probs=117.4
Q ss_pred HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC--------------------C-------CcchHHHHH
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN--------------------E-------PLFYLLGFL 89 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~--------------------~-------~~~~~~G~~ 89 (228)
..+...|+++++.++.+.+||.+..++++.++...|+.....+ + .+....|..
T Consensus 9 ~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g~~ 88 (222)
T TIGR00803 9 IFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGLS 88 (222)
T ss_pred HHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHHHH
Confidence 5678888899999999999998899999999988888742111 1 122356777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHH-HH---HhH-------------HHHHHHHHHH
Q 040323 90 VCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFT-LY---IEG-------------IFIVYLLLGN 152 (228)
Q Consensus 90 ~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~---~~~-------------~~~~~~~~~~ 152 (228)
..+.+..+.++..+++++..+.+ +.. .|....+...+.+.. .. .+. +...+.+++.
T Consensus 89 ~~l~a~~~~~~~~~y~e~~~k~~--~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 89 AVLSALLSSGFAGVYFEKILKDG--DTM-----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred HHHHHHHHHhhhHHHHHHcccCC--CCc-----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 78888888888999999875422 122 333333322222211 11 100 1222333222
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHH
Q 040323 153 ATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLY 216 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~ 216 (228)
. ...+.+..+++|+.|+.+.++....+++.+.++++++|||+++..++.|..+++.|+..|
T Consensus 162 ~---a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 162 N---VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred H---HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 2 222233567799999999999999999999999999999999999999999999987654
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.12 E-value=7.6e-10 Score=80.64 Aligned_cols=117 Identities=17% Similarity=0.117 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHH-HHHHHHHHHHHH
Q 040323 96 TRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-------IFIVYLLLGNATI-AYLVNLTKFLVR 167 (228)
Q Consensus 96 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~ 167 (228)
++|+.+.+..|+.. ++.|+.....+....+.+ +++.....+. ++.+......+.+ ....+...+.+.
T Consensus 1 ~~~a~~~~~~k~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLL----KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHh----ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 35788899999885 349999999999998886 5555544332 1223333333444 455666778899
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 168 KHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 168 ~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
++.++...+...+++|+++.+++++++||+++..+++|+++++.|+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998754
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.09 E-value=6e-10 Score=80.33 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHH
Q 040323 87 GFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG--------IFIVYLLLGNATIAYL 158 (228)
Q Consensus 87 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~ 158 (228)
-.+++++|++.+++-.++.|-.++ +.||......-......++......... +..|..++++|+.+..
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~----~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gl 79 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE----GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHH
Confidence 357899999999999999998763 4677666665555555555444443221 2457788999988888
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 159 VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
..+++|+++|.=.+..+..+.-+.++++++++++++||++|..+++|++++.+|.++..
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 88899999999888888899999999999999999999999999999999999987543
No 36
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.07 E-value=1.8e-10 Score=92.47 Aligned_cols=177 Identities=12% Similarity=0.097 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC--------CcchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040323 40 AATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE--------PLFYLLGFLVCIGSTTRRASKYAIQQILLTS 111 (228)
Q Consensus 40 ~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~--------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~ 111 (228)
.-.|. +.+++|+++|.|.++.++.|+.+...|+++...+| .+....|+.+.+.++-+||..++.++...
T Consensus 113 waip~-v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflv-- 189 (336)
T KOG2766|consen 113 WAIPC-VLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV-- 189 (336)
T ss_pred hhhHH-HHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHH--
Confidence 33565 56999999999999999999999999999864433 22336899999999999999999999884
Q ss_pred ccccCChHHHHHHhhHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040323 112 KAEKINFMNLLVYMAPMAASIFLPFTLYIEGI--------FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKA 183 (228)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 183 (228)
++.+..+++.....+++++..+- +..|.. +.........++-|+..-..-..+|..|++.+++.-...+
T Consensus 190 --kn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsD 266 (336)
T KOG2766|consen 190 --KNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSD 266 (336)
T ss_pred --hcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHH
Confidence 56899999999999998887766 444431 1122222233333333333346788999999999999999
Q ss_pred HHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhc
Q 040323 184 ALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFK 224 (228)
Q Consensus 184 v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~ 224 (228)
.+++++ ..||-+++|...+..+.+..|.+.|..+++.++
T Consensus 267 mwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~ 305 (336)
T KOG2766|consen 267 MWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEE 305 (336)
T ss_pred HHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCcH
Confidence 999998 778888999999999999999999976655443
No 37
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.06 E-value=1.8e-08 Score=85.08 Aligned_cols=131 Identities=8% Similarity=-0.053 Sum_probs=103.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH----------HHHHHHHHH
Q 040323 82 LFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG----------IFIVYLLLG 151 (228)
Q Consensus 82 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~ 151 (228)
+....|+++.+++++.|+...+..|.. .+.++.+...+...++.+++++....... +..+.....
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-----~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-----YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAV 78 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHH
Confidence 344689999999999999999999764 35899999999999988777665433210 111222334
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 152 NATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
.+......+.+.++.++++++...++..++.|++..+.+++++||+++..+++|.++.+.|+....
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 444444456677899999999999999999999999999999999999999999999999997654
No 38
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.97 E-value=4.8e-08 Score=80.62 Aligned_cols=127 Identities=9% Similarity=0.031 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHh-------H------HHHHHHHHHH
Q 040323 86 LGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIE-------G------IFIVYLLLGN 152 (228)
Q Consensus 86 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~------~~~~~~~~~~ 152 (228)
.|..+.+.++++|+...+..|.. .+.++.+...+-..++.+++++...... . .+.+..+...
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-----~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-----KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHH
Confidence 48889999999999999999974 2499999999999988877666543211 0 1123345555
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 153 ATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
++.....+.+.++.++++++.++++..+..|+++.+++++++||+++..+++|..+.+.|+.+..
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 65555566677889999999999999999999999999999999999999999999999987653
No 39
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.91 E-value=6.3e-08 Score=81.08 Aligned_cols=125 Identities=12% Similarity=0.075 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHH------hH--HHHHHHHHHHHHHHHHH
Q 040323 88 FLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYI------EG--IFIVYLLLGNATIAYLV 159 (228)
Q Consensus 88 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~--~~~~~~~~~~~~~~~~~ 159 (228)
..+.++++++++.+.+..|+..+ +.++. ..+....+++.+.|..... .. .+.+...+..+......
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~----~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHAD----KEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC----chhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHH
Confidence 46789999999999999997742 23333 3444555666666655432 11 12344555666666667
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323 160 NLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~ 218 (228)
+.+.+...++.++...+.+.+..|+++.+++++++||+++..+++|.++.+.|+.....
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 77778889999999999999999999999999999999999999999999999987654
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.82 E-value=2.9e-06 Score=69.98 Aligned_cols=195 Identities=13% Similarity=0.054 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHH----HHHHHHhhhhhhhccCC
Q 040323 13 FLKIFALSAIFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVY----YALMPVVLVIVLASNNE 80 (228)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~----~~~~l~~~G~~l~~~~~ 80 (228)
+.--+..|++.+.+...+..++++ +-..+.-+.+.+.+.++++|..+..++ +|+++.++|+.+....|
T Consensus 45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~ 124 (269)
T PF06800_consen 45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD 124 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 334455567777777777777777 556778888999999999998876665 48889999999875433
Q ss_pred C--------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH-HhH---HHHHHH
Q 040323 81 P--------LFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY-IEG---IFIVYL 148 (228)
Q Consensus 81 ~--------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~---~~~~~~ 148 (228)
. +....|....+.+.+.|..|.+..|.. +.|++....=|.+ +..+....... .+. ....+.
T Consensus 125 ~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~------~~~~~~~~lPqai-Gm~i~a~i~~~~~~~~~~~k~~~~ 197 (269)
T PF06800_consen 125 KKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF------HVSGWSAFLPQAI-GMLIGAFIFNLFSKKPFFEKKSWK 197 (269)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc------CCChhHhHHHHHH-HHHHHHHHHhhcccccccccchHH
Confidence 1 123568999999999999999998764 4677777654432 22222111111 111 122344
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccccc----chhHHHHHHHHHH
Q 040323 149 LLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVM----GMTEFVVTTMIAV 214 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~----~~~G~~l~~~g~~ 214 (228)
-+..|++=...|.+++...++.+..+.=.++.+..+++.+.|.+++||.=+.. .++|.++++.|.+
T Consensus 198 nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 198 NILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred hhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 45556665667777788899999999999999999999999999999998766 4568887877765
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.71 E-value=1.4e-06 Score=75.50 Aligned_cols=130 Identities=12% Similarity=0.155 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH----H----HHHHHHHHHHHHHH
Q 040323 86 LGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG----I----FIVYLLLGNATIAY 157 (228)
Q Consensus 86 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~----~~~~~~~~~~~~~~ 157 (228)
.-...++...++|+.+.++.|..++ ...++..+..+-..+++++++|.....+. + ..+..+...++.++
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~---~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATS---KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH---CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 3457788888999999999999884 46899999999999998888887654332 1 12334444555554
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH------hcCcccccchhHHHHHHHHHHHHHh
Q 040323 158 LVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMI------FKNPVTVMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~------~ge~~s~~~~~G~~l~~~g~~~~~~ 218 (228)
..+...+..+++++|...+++.++.|+++.++++++ ++|+++..+++|.++.+.|+.+...
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 455566788999999999999999999999999999 6999999999999999999987654
No 42
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.61 E-value=3.2e-06 Score=62.47 Aligned_cols=124 Identities=11% Similarity=-0.008 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040323 86 LGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFL 165 (228)
Q Consensus 86 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
.|+++.+.+.++.+...++.|+-+++.+ +.+... . . .... . ...++....+..+..... ..+.+..
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~---~-~-~~~~---~--~~~~p~~~i~lgl~~~~l---a~~~w~~ 67 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAW---D-F-IAAL---L--AFGLALRAVLLGLAGYAL---SMLCWLK 67 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC-Cccchh---H-H-HHHH---H--HHhccHHHHHHHHHHHHH---HHHHHHH
Confidence 3788899999999999999998765321 111111 0 0 0000 0 011211112222222222 2233557
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHHH--HhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323 166 VRKHTCTLTLQVLGNAKAALAAVVLVM--IFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 166 ~~~~~~~~~~s~~~~~~~v~~~v~~~~--~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~ 223 (228)
++++.+...+..+-...++...+.++. +|||++|+.+++|.+++++|+...+..++|+
T Consensus 68 aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~ 127 (129)
T PRK02971 68 ALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKA 127 (129)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 799999999988888888778777875 8999999999999999999999988766554
No 43
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.53 E-value=6.7e-07 Score=64.60 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHH-HHHHHhHHHHHH------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCCc
Q 040323 13 FLKIFALSAIFC-FSVVCGNTSLRY------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPL 82 (228)
Q Consensus 13 ~~~~~~~~~~~~-~~~~~~~~~l~~------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~ 82 (228)
+..+...++... ........+.++ .+.++.|+++.+++++++|||++++++.++.++++|+.++..+|.+
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAPALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 333444444433 445555555555 8889999999999999999999999999999999999998776644
No 44
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.42 E-value=2.1e-05 Score=67.94 Aligned_cols=130 Identities=8% Similarity=-0.036 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC-hHHHHHHhhHHHHHHHHHHHHHHh--------HHHHHHHHHHHHH
Q 040323 84 YLLGFLVCIGSTTRRASKYAIQQILLTSKAEKIN-FMNLLVYMAPMAASIFLPFTLYIE--------GIFIVYLLLGNAT 154 (228)
Q Consensus 84 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~ 154 (228)
++.-..+.+..-.+...+++..|..++ ..+ |+.+..++...+.+.+.+...... .+..+..++..++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~----~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl 122 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALN----MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGL 122 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 445556666677777778888888874 367 999999999888766544433211 1224445666666
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 155 IAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
++...+...+..++++++..++++-.++|++++++++++++|+++..++.|.+++++|+.+..
T Consensus 123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 666666666788999999999999999999999999999999999999999999999998754
No 45
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.41 E-value=6.8e-06 Score=67.63 Aligned_cols=115 Identities=14% Similarity=0.024 Sum_probs=86.5
Q ss_pred HHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 040323 101 KYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGI-FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLG 179 (228)
Q Consensus 101 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 179 (228)
..+..|..++ ...++.+...+....+.+.+.+........ +..+....+++.....+...+..++++++...+++.
T Consensus 4 ~~~~~k~~~~---~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~ 80 (260)
T TIGR00950 4 TGVVIGQYLE---GQVPLYFAVFRRLIFALLLLLPLLRRRPPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLL 80 (260)
T ss_pred hHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHhccCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHH
Confidence 3445566542 357888888888888877776654332122 233444444444455556677899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323 180 NAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 180 ~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~ 218 (228)
.++|+++.+++++++||++++.+++|..+.+.|+.....
T Consensus 81 ~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 81 YLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred hhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999887643
No 46
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.39 E-value=2.3e-05 Score=64.64 Aligned_cols=131 Identities=9% Similarity=0.020 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH----------HHHHHHHHHHH
Q 040323 84 YLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG----------IFIVYLLLGNA 153 (228)
Q Consensus 84 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~ 153 (228)
+..|++.++.+.+.|+.--.+.|-. ++.++.+...+-.+.+...++........ |..+.....++
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-----~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-----EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHH
Confidence 4579999999999999999999877 57999999999999888777665544321 22233333333
Q ss_pred HHHHHHHHHHH-HHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323 154 TIAYLVNLTKF-LVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k 220 (228)
.-...|+..| ++..+-...++|+-.+++|.+.+++|.+++||++|..|++..++..+|+..-.+..
T Consensus 80 -~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 80 -LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred -HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 3334565554 77888889999999999999999999999999999999999999999998766553
No 47
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.35 E-value=1.7e-05 Score=66.96 Aligned_cols=128 Identities=7% Similarity=-0.002 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHH
Q 040323 86 LGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGI-FIVYLLLGNATIAYLVNLTKF 164 (228)
Q Consensus 86 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 164 (228)
.+++.++.+.+.|+......|... +.++|..+..+-...+++++.+.......+ +.+...+..++.....+...+
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~----~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVS----ESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLA 79 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH----ccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHH
Confidence 456788899999999999999875 358999999988888877766543111111 112222333332222222223
Q ss_pred HHH----hccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 165 LVR----KHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 165 ~~~----~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
... +..++...+++.++.|+++.++++++++|++++.+++|+++.+.|+.+..
T Consensus 80 ~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 80 LSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred HHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 333 45788888999999999999999999999999999999999999987664
No 48
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.29 E-value=6.9e-05 Score=63.09 Aligned_cols=126 Identities=11% Similarity=-0.021 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHH-HHHHH
Q 040323 88 FLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG----IFIVYLLLGNATIAY-LVNLT 162 (228)
Q Consensus 88 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~ 162 (228)
+...+.-.+.|+...+..|... ++.+|.+...+-...+++++++....... .+.+......|.... ..+..
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~----~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGV----ESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGM 85 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667789999999999764 36999999999999988887776543221 122333333443332 22334
Q ss_pred HHHHH-hccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323 163 KFLVR-KHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 163 ~~~~~-~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~ 218 (228)
.+... ++.++...++..++.|+++.+++.+ +||+++..+++|.++.+.|+.+...
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 45556 8889999999999999999999985 7999999999999999999987754
No 49
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.26 E-value=5.4e-05 Score=63.93 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 040323 88 FLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNL-TKFLV 166 (228)
Q Consensus 88 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 166 (228)
.+..+++++.|+...+..|... ++.+|.....+-..++++.+++... .+..+ +......+......++ ..+..
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~----~~~~p~~~~~~R~~~a~~~l~~~~~-~~~~~-~~~~~~~g~~~~~~~~~~~~~~ 79 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGL----HNMPPLMLAGLRFMLVAFPAIFFVA-RPKVP-LNLLLGYGLTISFGQFAFLFCA 79 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHhc-CCCCc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999998775 3589999999888777655544321 11111 1122222333222222 33455
Q ss_pred Hhc-cchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323 167 RKH-TCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 167 ~~~-~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~ 218 (228)
.++ .++...+++.++.|+++.++++++++|+++..+++|.++.+.|+.....
T Consensus 80 ~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 80 INFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 665 5778889999999999999999999999999999999999999877653
No 50
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.24 E-value=4.1e-06 Score=65.31 Aligned_cols=185 Identities=11% Similarity=0.052 Sum_probs=123.6
Q ss_pred HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE--PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAE 114 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~--~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~ 114 (228)
.+.++.-.|+.+++++++|+|+..-++++..+++.|++++.+.| ...++.|+..+..|+...++|-+.-|+.+.+.+
T Consensus 84 ai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn- 162 (290)
T KOG4314|consen 84 AIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNAN- 162 (290)
T ss_pred HHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCc-
Confidence 66678888999999999999999999999999999999988655 445689999999999999999999999874311
Q ss_pred cCChHHHHHHhhHHHHH-HHHHH-HHHH---hHHH-H----HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040323 115 KINFMNLLVYMAPMAAS-IFLPF-TLYI---EGIF-I----VYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAA 184 (228)
Q Consensus 115 ~~~~~~~~~~~~~~~~~-~l~~~-~~~~---~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v 184 (228)
--+....+.-...+-.. ...|. .+.+ |..+ + |..+...+......|+.....+..+.|...|+-......
T Consensus 163 ~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP 242 (290)
T KOG4314|consen 163 FGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIP 242 (290)
T ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCc
Confidence 11222222111111111 11111 1111 2211 2 334444444555566555555666777777766666656
Q ss_pred HHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 185 LAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 185 ~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
--..+..++-+-..+...+.|-.+++.|.++.-.-+.+
T Consensus 243 ~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 243 GNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 66677777777777888888988998888776544333
No 51
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.22 E-value=7.8e-05 Score=62.99 Aligned_cols=121 Identities=9% Similarity=-0.099 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHH--hH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040323 94 STTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYI--EG----IFIVYLLLGNATIAYLVNLTKFLVR 167 (228)
Q Consensus 94 s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
.-.+....+++.|..++ .-..|..+...+...+.+...+..... +. .+.+..++..|++....+...+..+
T Consensus 10 w~~~~~~~~~~NK~~l~---~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l 86 (302)
T TIGR00817 10 WYFLNVYFNIYNKKLLN---VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSL 86 (302)
T ss_pred HHHHHHHHHHHHHHHHh---hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777763 235677777777777766554442111 11 1234444445555555556667889
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 168 KHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 168 ~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
+++++...+++..+.|+++.++++++++|+++..++.|.++.+.|+....
T Consensus 87 ~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 87 SKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999997643
No 52
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.13 E-value=3.4e-05 Score=55.60 Aligned_cols=71 Identities=8% Similarity=0.084 Sum_probs=57.7
Q ss_pred HHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 151 GNATIAY-LVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 151 ~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
..+.++. ..+...++..++.++ .++....+.|+++.++++++++|+++..++.|.++++.|+....+.+.+
T Consensus 39 ~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 39 LAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3344443 344455677888885 7789999999999999999999999999999999999999988776543
No 53
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.07 E-value=0.00031 Score=50.52 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=50.0
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 163 KFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 163 ~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
...++++.+...+...-++.++.+.++|+++|||++|..+++|..+++.|+....
T Consensus 54 ~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 54 WLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567889999988888889999999999999999999999999999999997654
No 54
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.96 E-value=3.2e-05 Score=55.93 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHHHHH-HHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323 8 LSQKQFLKIFALSAI-FCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLA 76 (228)
Q Consensus 8 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~ 76 (228)
.+++.+......+.+ ......+.+.++++ .+..+.|+++.+++++++||++++++++++.+++.|+.+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 48 LSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred CChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334445555666655 45566677777777 8889999999999999999999999999999999999875
No 55
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.92 E-value=0.00029 Score=59.65 Aligned_cols=127 Identities=10% Similarity=-0.011 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHh-H--H-HHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040323 97 RRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIE-G--I-FIVYLLLGNATIAYLVNLTKFLVRKHTCT 172 (228)
Q Consensus 97 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
++..+.+.+++..+++..+..+..+...|....++...+...... . + .-+.-....++..+........++++++.
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~ 90 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISY 90 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 334466788887754222224777777777776665555443333 1 1 11222233344455555666788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323 173 LTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 173 ~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~ 223 (228)
.+..+.-..+++...+.+.+++|++.+..++.+.+++.+|+...+..+.++
T Consensus 91 p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 91 PTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence 999999999999999999999999999999999999999999988765443
No 56
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.91 E-value=0.00023 Score=59.90 Aligned_cols=129 Identities=12% Similarity=0.051 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHH
Q 040323 87 GFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-----IFIVYLLLGNATIAYLVNL 161 (228)
Q Consensus 87 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 161 (228)
|+++++.++++|+...+..|+. + +.++.+... ...+..++......... +..+..-..+|..=...|+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~----~-g~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~ 74 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKI----G-GGPYSQTLG--TTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQI 74 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhcc----C-CCHHHHHHH--HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhh
Confidence 6788999999999999999886 1 344544442 22333333332222221 2233334444444444667
Q ss_pred HHHHHHhccchhHHHHHHH-HHHHHHHHHHHHHhcCcccccc----hhHHHHHHHHHHHHHhhhhh
Q 040323 162 TKFLVRKHTCTLTLQVLGN-AKAALAAVVLVMIFKNPVTVMG----MTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 162 ~~~~~~~~~~~~~~s~~~~-~~~v~~~v~~~~~~ge~~s~~~----~~G~~l~~~g~~~~~~~k~~ 222 (228)
..+.++++++......+.+ +.+++..+++.++|||..+..+ .+|.++++.|+.+....|.+
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~ 140 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDK 140 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccc
Confidence 7888999999888877777 8888999999999999999999 99999999999887665433
No 57
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.87 E-value=0.00019 Score=51.59 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=40.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323 31 NTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS 77 (228)
Q Consensus 31 ~~~l~~~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~ 77 (228)
..+..|.+.++.|+++.+.+++++|||+++++++++.++++|+.+..
T Consensus 62 plg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 62 PVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33444466679999999999999999999999999999999998764
No 58
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.84 E-value=0.00091 Score=56.60 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=46.2
Q ss_pred HHHHHHHHH-HHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323 15 KIFALSAIF-CFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLA 76 (228)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~ 76 (228)
+..+.|+.. ..+...+..++.+ -+.+..-++..+++..++|||++++.+.|+.+++.|..+.
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~li 120 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLI 120 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheee
Confidence 344555432 3344455555555 4457777899999999999999999999999999999874
No 59
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.74 E-value=0.0016 Score=53.94 Aligned_cols=135 Identities=16% Similarity=0.098 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHH---hHH---HHHHHHHHHHHHHHH
Q 040323 85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYI---EGI---FIVYLLLGNATIAYL 158 (228)
Q Consensus 85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~---~~~~~~~~~~~~~~~ 158 (228)
..+....+...+.++......|+..+ ...+...........+.....+..... ..+ ..++..+..+.....
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVE---SLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLAL 82 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHH
Confidence 45777778888888888888887742 124445544444444444422222111 111 122444444545555
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH-HHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 159 VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLV-MIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~-~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
.+...+..++++++...+...+..|++..+++. ++++|+++..++.|..+.+.|+.+....+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 556667789999999999999999999999997 6669999999999999999999887765443
No 60
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.68 E-value=0.00033 Score=57.54 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 145 IVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
..+.....+++-..-|...+..+++.||.+..+....|.+.+.+++++++|++++..||.+..+...|+......+..
T Consensus 16 ~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 16 DTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 344555566667777788889999999999999999999999999999999999999999999999999988765433
No 61
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.42 E-value=0.012 Score=49.43 Aligned_cols=102 Identities=11% Similarity=-0.067 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHh--H-HHHHHHHHHHHHHHHHHHH
Q 040323 85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIE--G-IFIVYLLLGNATIAYLVNL 161 (228)
Q Consensus 85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 161 (228)
..|..+++++.++++......|...+ ..++.+...+-..++++++++...... . ++.+......+......+.
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~----~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 86 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFP----LVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNY 86 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHH----HcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999988753 489999999999999888776543221 1 1222223333344444556
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 040323 162 TKFLVRKHTCTLTLQVLGNAKAALAAVVL 190 (228)
Q Consensus 162 ~~~~~~~~~~~~~~s~~~~~~~v~~~v~~ 190 (228)
..++.++++++...+...+..|++..+++
T Consensus 87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~ 115 (293)
T PRK10532 87 LFYLSIQTVPLGIAVALEFTGPLAVALFS 115 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 66788999999999999999999998876
No 62
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.37 E-value=0.007 Score=44.06 Aligned_cols=56 Identities=11% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHhccch-hHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323 165 LVRKHTCT-LTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 165 ~~~~~~~~-~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k 220 (228)
.++++.+. ..+++..-+-.+.+.+.++++|||++|+.+++|..+++.|++..+...
T Consensus 49 ~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 49 FAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 44555443 234444556778889999999999999999999999999999988654
No 63
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.30 E-value=0.0068 Score=43.45 Aligned_cols=58 Identities=5% Similarity=0.013 Sum_probs=46.3
Q ss_pred HHHHhccchh-HHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhh
Q 040323 164 FLVRKHTCTL-TLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKK 221 (228)
Q Consensus 164 ~~~~~~~~~~-~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~ 221 (228)
..++++.+.. .+++..-+..+...+.++++|||++|+.+++|+.+++.|+...+..++
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3556665543 345555567788899999999999999999999999999999886554
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.27 E-value=0.011 Score=50.61 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323 146 VYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV 219 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~ 219 (228)
+|--++.+++=.-.|+....+.++++.+.++++.+...+++.++++++++|+.++.+++|.++++.|+......
T Consensus 79 ~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 79 WWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 33333346677778888889999999999999999999999999999999999999999999999998876544
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.25 E-value=0.11 Score=44.86 Aligned_cols=199 Identities=9% Similarity=-0.011 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhcccc---c----hHHHHHHHHHhhhhhhhcc----C
Q 040323 19 LSAIFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKE---F----AEVYYALMPVVLVIVLASN----N 79 (228)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~---~----~~~~~~~~l~~~G~~l~~~----~ 79 (228)
.|++.+.+......+.++ +-..++-+...+...++++|-. + ..-.+++++.++|+.+... .
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 344444455555555555 5556677777788888888644 2 2456888999999998654 2
Q ss_pred CC---------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cccCChHHHHHHhhH---HHHHHHHHHHHHH---
Q 040323 80 EP---------LFYLLGFLVCIGSTTRRASKYAIQQILLTSK----AEKINFMNLLVYMAP---MAASIFLPFTLYI--- 140 (228)
Q Consensus 80 ~~---------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~l~~~~~~~--- 140 (228)
|. .....|+++++.|.+.++.|......-..-+ +...++.....-+.. .+..+........
T Consensus 159 ~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~ 238 (345)
T PRK13499 159 ERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLA 238 (345)
T ss_pred ccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 1236899999999999999994333221000 122333322222211 2322222211111
Q ss_pred --hH----HH------HHHH----HHHHHHHHHHHHHHHHHHHhccchh----HHHHHHHHHHHHHHHHHHHHhcCccc-
Q 040323 141 --EG----IF------IVYL----LLGNATIAYLVNLTKFLVRKHTCTL----TLQVLGNAKAALAAVVLVMIFKNPVT- 199 (228)
Q Consensus 141 --~~----~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~~~~~~~v~~~v~~~~~~ge~~s- 199 (228)
+. .+ .++- -++.|+.=+..++.+....++.+.. ...+...+.-+++.++|. ++||.=+
T Consensus 239 k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a 317 (345)
T PRK13499 239 KNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGA 317 (345)
T ss_pred hCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCC
Confidence 11 00 1121 1344444344444444555555333 222455777799999999 4998866
Q ss_pred -----ccchhHHHHHHHHHHHHHh
Q 040323 200 -----VMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 200 -----~~~~~G~~l~~~g~~~~~~ 218 (228)
...++|+++++.|..+...
T Consensus 318 ~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 318 SRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred CccchhHHHHHHHHHHHHHHHHhh
Confidence 6778999999999877654
No 66
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.24 E-value=0.00076 Score=49.08 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323 17 FALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS 77 (228)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~ 77 (228)
...|+.-..+..+...+++. -+-.+.|+++.+++++++|||+|.++++++.++++|..+..
T Consensus 71 ilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 71 ILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 33343333444444444444 45578999999999999999999999999999999998754
No 67
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.23 E-value=0.021 Score=40.82 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=42.6
Q ss_pred HHHhccch-hHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 165 LVRKHTCT-LTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 165 ~~~~~~~~-~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
.++|+.+. +.+++..-.-.+.+.+.++++|||++|+.+++|+.+++.|+..-+
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44555443 345666667778889999999999999999999999999998764
No 68
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.20 E-value=0.004 Score=52.68 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040323 84 YLLGFLVCIGSTTRRASKYAIQQILLTSKAE-KINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLT 162 (228)
Q Consensus 84 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
...|...++.++++.+...+++|+-..+.++ +.+...- +.. ... ...|+.....-..+...+
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~-------------~~~-~l~-~~~W~~G~~~~~~g~~~~-- 67 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSG-------------GRS-YLR-RPLWWIGLLLMVLGEILN-- 67 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccch-------------hhH-HHh-hHHHHHHHHHHhcchHHH--
Confidence 3679999999999999999999986432111 1111000 000 111 112332222223344444
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 163 KFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 163 ~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
+.+....++..++.++...-++..+++..++||+++..++.|..+++.|....-
T Consensus 68 -~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 68 -FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred -HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 344677788889999999999999999999999999999999999999987643
No 69
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.99 E-value=0.022 Score=40.42 Aligned_cols=55 Identities=9% Similarity=-0.007 Sum_probs=45.7
Q ss_pred HHHhccc-hhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323 165 LVRKHTC-TLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV 219 (228)
Q Consensus 165 ~~~~~~~-~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~ 219 (228)
.++|+.+ .+.+++..-.-.+.+.+.++++|||++|+.+++|+.+++.|+..-+..
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 4566644 345677777888999999999999999999999999999999887643
No 70
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.95 E-value=0.038 Score=41.25 Aligned_cols=123 Identities=10% Similarity=0.055 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccC-ChHHHHHHhhHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHH
Q 040323 88 FLVCIGSTTRRASKYAIQQILLTSKAEKI-NFMNLLVYMAPMAASIFLPFTLYIEGI------FIVYLLLGNATIAYLVN 160 (228)
Q Consensus 88 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 160 (228)
.++++.+.+..+.+.....++- ++. |++.........+.+.+.......+.+ +..+...+.|+++...-
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~----~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLG----KALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHH
Confidence 4667778888888888887773 334 488888888888877776666554431 22333344777777777
Q ss_pred HHHHHHHhccchhHHHHHHHHH-HHHHHHHHHH-Hh---cCcccccchhHHHHHHHHHH
Q 040323 161 LTKFLVRKHTCTLTLQVLGNAK-AALAAVVLVM-IF---KNPVTVMGMTEFVVTTMIAV 214 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~s~~~~~~-~v~~~v~~~~-~~---ge~~s~~~~~G~~l~~~g~~ 214 (228)
.+....+++.++.........- -+.+.+++.+ +| ++++++...+|.++++.|+.
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 7777889999988776665544 4555666665 33 47789999999999999985
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.033 Score=39.43 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=46.7
Q ss_pred HHHhccch-hHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323 165 LVRKHTCT-LTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 165 ~~~~~~~~-~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k 220 (228)
.++|+.+- +.+++..-.-.+.+.+.|+++|||++|+..++|..++++|+..-+..+
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 45666543 456777778888899999999999999999999999999999877643
No 72
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.66 E-value=0.019 Score=41.80 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323 17 FALSAIFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN 78 (228)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~ 78 (228)
....+.+..++.+...++++ +-....-+.+.+.+.++++|+++..+++++.++++|+.....
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 33344455555555555544 444667778889999999999999999999999999988643
No 73
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.24 Score=42.35 Aligned_cols=71 Identities=18% Similarity=0.102 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323 148 LLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~ 218 (228)
-+...+++-..-|...+....+.||+++++...+|...+.+.++++++++++..||....+.+.|+.....
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 34444555566666777889999999999999999999999999999999999999999999999998873
No 74
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.50 E-value=0.034 Score=41.04 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=42.3
Q ss_pred HHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHH--HhccccchHHHHHHHHHhhhhhhhccC
Q 040323 23 FCFSVVCGNTSLRY-------AVGAATLFFNAISTFL--LTCKKEFAEVYYALMPVVLVIVLASNN 79 (228)
Q Consensus 23 ~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l--~~~~~~~~~~~~~~~l~~~G~~l~~~~ 79 (228)
+..+..+.+.+++. -+.+..|.++.+.++. +++|+++.++++++.++++|+.+...+
T Consensus 58 ~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 58 YALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 33455556665555 4446666666667764 899999999999999999999997644
No 75
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.25 E-value=0.055 Score=38.41 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=42.5
Q ss_pred HHHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323 21 AIFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS 77 (228)
Q Consensus 21 ~~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~ 77 (228)
..+..+..+...++++ +-...--+.+.+.+++++||+.|+.+++++.+.++|+....
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 3444445444444444 44456667788999999999999999999999999998763
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.23 E-value=0.049 Score=38.92 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=41.1
Q ss_pred HHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323 22 IFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLA 76 (228)
Q Consensus 22 ~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~ 76 (228)
.+..+..+...++++ +-...--+.+.+.+++++||++++.+++++.+++.|+...
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344444444444444 4445666677899999999999999999999999999864
No 77
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.21 E-value=0.095 Score=36.28 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=24.0
Q ss_pred HHHHhccchhHH-HHHHHHHHHHHHHHHHHHhcCcccccchhHHHHH
Q 040323 164 FLVRKHTCTLTL-QVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVT 209 (228)
Q Consensus 164 ~~~~~~~~~~~~-s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~ 209 (228)
..++|+.+...+ .+..-...+...+.|+++|||++|+.++.|..++
T Consensus 47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 356777655443 5555677788999999999999999999999874
No 78
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.06 E-value=0.073 Score=38.12 Aligned_cols=40 Identities=3% Similarity=0.035 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323 39 GAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN 78 (228)
Q Consensus 39 ~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~ 78 (228)
....-+.+.+.++++++|++++.+++++.++++|+.....
T Consensus 64 ~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4456667789999999999999999999999999998743
No 79
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.03 E-value=0.056 Score=38.25 Aligned_cols=56 Identities=11% Similarity=-0.037 Sum_probs=42.4
Q ss_pred HHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323 22 IFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS 77 (228)
Q Consensus 22 ~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~ 77 (228)
.+..++.+...++++ +-...--+.+.+.++++++|+.+..+++++.+.++|+...-
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 344444444444444 44466667788999999999999999999999999998754
No 80
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.00079 Score=54.44 Aligned_cols=177 Identities=14% Similarity=0.080 Sum_probs=121.4
Q ss_pred HHhHHHHHHHHHHHHHHhccccchHHH----HHHHHHhhhhhhhccCCC--------cchHHHHHHHHHHHHHHHHHHHH
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAEVY----YALMPVVLVIVLASNNEP--------LFYLLGFLVCIGSTTRRASKYAI 104 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~----~~~~l~~~G~~l~~~~~~--------~~~~~G~~~~l~s~~~~a~~~v~ 104 (228)
+-..+.-+-+.+++.+.++|..+.-+. +|+++.++|+.+....|. +..-.|....+.|.+.|..|.+.
T Consensus 91 iStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl 170 (288)
T COG4975 91 ISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVL 170 (288)
T ss_pred ccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeeeeccceeeeEee
Confidence 444667778889999999998876554 688889999999765442 12247888888899999999998
Q ss_pred HHHHhhcccccCChHHHHHHhhHHHHHHHHHH-HHHHh-H--HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 040323 105 QQILLTSKAEKINFMNLLVYMAPMAASIFLPF-TLYIE-G--IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGN 180 (228)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 180 (228)
.+-. ++|.++...-|.. +.++.... ....+ . ....+.-...|+.=...|...+.+.++.+-.+.=-++.
T Consensus 171 ~~~f------~v~g~saiLPqAi-GMv~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQ 243 (288)
T COG4975 171 FQLF------DVDGLSAILPQAI-GMVIGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQ 243 (288)
T ss_pred eccc------cccchhhhhHHHH-HHHHHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhh
Confidence 8765 3566655544432 22222222 21221 1 23345555566666667777777788877666656667
Q ss_pred HHHHHHHHHHHHHhcCcccccch----hHHHHHHHHHHHHHhhh
Q 040323 181 AKAALAAVVLVMIFKNPVTVMGM----TEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 181 ~~~v~~~v~~~~~~ge~~s~~~~----~G~~l~~~g~~~~~~~k 220 (228)
+.-+++.+-+.+++||+=|..++ +|.++++.|..+-...|
T Consensus 244 lgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 244 LGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred heeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 77889999999999999887765 67788888876655443
No 81
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.55 E-value=0.13 Score=38.53 Aligned_cols=40 Identities=5% Similarity=0.078 Sum_probs=36.8
Q ss_pred HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLA 76 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~ 76 (228)
++..+..+.+.+.+.++++|+++..++.|+.+++.|..+.
T Consensus 112 v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 112 VLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 7778888889999999999999999999999999998764
No 82
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.45 E-value=0.022 Score=46.92 Aligned_cols=131 Identities=10% Similarity=0.032 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040323 87 GFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLV 166 (228)
Q Consensus 87 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
|++.++.|+++++...+=.||. ..-|++....+++....+.-.......+.|.+.....++|.+=...|.+..-+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-----~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpi 75 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-----DTGDGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPI 75 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-----cCCCcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhH
Confidence 5677888888888888878776 23577666666655544444444444555555444444554444455555566
Q ss_pred Hhccchh-HHHHHHHHHHHHHHHHHHH-HhcCcc-----cccchhHHHHHHHHHHHHHhhhhh
Q 040323 167 RKHTCTL-TLQVLGNAKAALAAVVLVM-IFKNPV-----TVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 167 ~~~~~~~-~~s~~~~~~~v~~~v~~~~-~~ge~~-----s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
++.++=. -..+.+..+-+.+...|-+ +||++. .+.+.+|.+++++|...|..-|.+
T Consensus 76 i~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 76 IKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 6665532 2334444455555555533 566433 477899999999999998765543
No 83
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.27 E-value=0.0073 Score=49.63 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHH
Q 040323 86 LGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY--------IEGIFIVYLLLGNATIAY 157 (228)
Q Consensus 86 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~ 157 (228)
.|.++..+| ..+....+..++..+ .+|.+.-..-... .+++..+. +.++.---.+++=|+.++
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e-----~~p~e~a~~r~l~---~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~ 108 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLE-----NDPMELASFRLLV---RMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF 108 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhc-----cChhHhhhhhhhh---ehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh
Confidence 577777777 555666666666643 4455444332221 12232221 111111001222333444
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323 158 LVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~ 218 (228)
..-+..|++.++.+-..++++....|+++++.+|.+++|+.|..+.+|..+++.|+++..+
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR 169 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR 169 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence 4444456777777777888888999999999999999999999999999999999977543
No 84
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.13 Score=43.39 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=40.6
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323 29 CGNTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS 77 (228)
Q Consensus 29 ~~~~~l~~~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~ 77 (228)
+.+.++..-+.++.-+..++++..++|||.++.-.+|+.+.++|-.++.
T Consensus 87 FAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 87 FAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred hchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 3334444466788899999999999999999999999999999998754
No 85
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.13 E-value=1 Score=38.89 Aligned_cols=128 Identities=11% Similarity=0.065 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHH--HHhH----------HHHHHHHHHH
Q 040323 85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTL--YIEG----------IFIVYLLLGN 152 (228)
Q Consensus 85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~----------~~~~~~~~~~ 152 (228)
..|+++++++++|++...+-+||. ++-+.+.. .....+-.-++.|... ..++ +..+....++
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~~-----k~w~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKKV-----KKWSWETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred HHHHHHHHHHHHHhhccccccccc-----CCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 479999999999999999999874 23343333 2111111111222111 1111 1233344445
Q ss_pred HHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHHHHHhcCcc---c----ccchhHHHHHHHHHHHHHh
Q 040323 153 ATIAYLVNLTKFLVRKHTCTLT-LQVLGNAKAALAAVVLVMIFKNPV---T----VMGMTEFVVTTMIAVLYSK 218 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~v~~~v~~~~~~ge~~---s----~~~~~G~~l~~~g~~~~~~ 218 (228)
|++=...|...+..+++.+-.. ..+..-++-+.+.+++.+++||-. + ...++|.++++.|+.+-.+
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5544445566666677665443 334445667888899999998654 2 3467899999999988877
No 86
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.77 E-value=0.48 Score=34.05 Aligned_cols=105 Identities=7% Similarity=-0.102 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 040323 95 TTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLT 174 (228)
Q Consensus 95 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
++.|+.-+-+.||.-+++++.-++ . +..-.... ....+++....+++-..+.. +++.+++.+-..
T Consensus 5 g~~WG~Tnpfik~g~~~~~~~~~~---~--~~~~~~~~------Ll~n~~y~ipf~lNq~GSv~----f~~~L~~~dlSl 69 (113)
T PF10639_consen 5 GILWGCTNPFIKRGSSGLEKVKAS---L--QLLQEIKF------LLLNPKYIIPFLLNQSGSVL----FFLLLGSADLSL 69 (113)
T ss_pred hHHhcCchHHHHHHHhhcCCccch---H--HHHHHHHH------HHHhHHHHHHHHHHHHHHHH----HHHHHhcCCcee
Confidence 456777777788775543333333 1 11111111 12223344444444333222 345577766555
Q ss_pred HHHH-HHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHH
Q 040323 175 LQVL-GNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAV 214 (228)
Q Consensus 175 ~s~~-~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~ 214 (228)
+..+ |.+.-+++++.++++.+|..+...++|+++++.|+.
T Consensus 70 avPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~ 110 (113)
T PF10639_consen 70 AVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA 110 (113)
T ss_pred eehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence 5544 688889999999888888889999999999999975
No 87
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.72 E-value=1.3 Score=33.51 Aligned_cols=132 Identities=10% Similarity=0.011 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-H------H-HHHHHHHHHHHH
Q 040323 85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-I------F-IVYLLLGNATIA 156 (228)
Q Consensus 85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~------~-~~~~~~~~~~~~ 156 (228)
+...++.+.+.++.+.+.-...++-+. --+|..........+...+.......+. + . -||.. ..|+++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~---~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~-~GG~lG 79 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARY---LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAW-IGGLLG 79 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHH-Hccchh
Confidence 345677788888888888887777321 1246666666667777666655554432 1 1 23333 334555
Q ss_pred HHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHHhc----CcccccchhHHHHHHHHHHHHHhhh
Q 040323 157 YLVNLTKFLVRKHTCTLTLQ-VLGNAKAALAAVVLVMIFK----NPVTVMGMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~s-~~~~~~~v~~~v~~~~~~g----e~~s~~~~~G~~l~~~g~~~~~~~k 220 (228)
...-.......+|.++++.. +.-..+-+.+.+++.+=+. .+++..-++|.++++.|+...+..+
T Consensus 80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 55555556677787776544 4445556666777666543 5678999999999999966555443
No 88
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.63 E-value=0.2 Score=34.62 Aligned_cols=48 Identities=4% Similarity=-0.061 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 040323 22 IFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPV 69 (228)
Q Consensus 22 ~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~ 69 (228)
.++.+..+...++++ +..+...+.+.+.+..+++|+.|..++.++.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 444555555555544 556788888999999999999999999998753
No 89
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.53 E-value=0.6 Score=38.82 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH-HHHHHHHHHHHHHHhcCcccccchh----HHHHHHHHHHHHHhh
Q 040323 145 IVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLG-NAKAALAAVVLVMIFKNPVTVMGMT----EFVVTTMIAVLYSKV 219 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~v~~~v~~~~~~ge~~s~~~~~----G~~l~~~g~~~~~~~ 219 (228)
.++....+|++=...+...+...++.+..+...++ -++-+.+.++++++|||.-+..+++ +.++++.|+.+-++.
T Consensus 44 ~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~ 123 (269)
T PF06800_consen 44 SFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQ 123 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccc
Confidence 34444555554444555555666665554444444 3556678889999999998877655 788899999888877
Q ss_pred hhhhc
Q 040323 220 KKRFK 224 (228)
Q Consensus 220 k~~~~ 224 (228)
+++++
T Consensus 124 ~~~~~ 128 (269)
T PF06800_consen 124 DKKSD 128 (269)
T ss_pred ccccc
Confidence 66554
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.40 E-value=0.26 Score=35.45 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHH------hHHHHHH-HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhh
Q 040323 13 FLKIFALSAIFCFSVVC------GNTSLRY-AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVL 75 (228)
Q Consensus 13 ~~~~~~~~~~~~~~~~~------~~~~l~~-~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l 75 (228)
++-.+|+.+..+++..+ .+.|+.+ +..+++=+++.+.++++.+|..++++++++.+++.|+.+
T Consensus 42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 34445665555554433 2333333 777999999999999888888899999999999999875
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.33 E-value=0.05 Score=46.83 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhc
Q 040323 146 VYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFK 224 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~ 224 (228)
....++-|..=|..|+....++++++....+++......++..++..+-+|++|+.-+++..+.+.|++..+..+.+|+
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 4445555666677888888899999999999999999999999999999999999999999999999998888765553
No 92
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=92.64 E-value=0.66 Score=38.10 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=35.0
Q ss_pred HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhh
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIV 74 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~ 74 (228)
++.++.|.+..+.++++++|+++..||.++..++.+..
T Consensus 241 ~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 241 TLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999988777665
No 93
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.64 E-value=5.6 Score=33.62 Aligned_cols=128 Identities=9% Similarity=0.030 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhhc----ccccC-ChHHHHHHhhHHHHHHHHHHHHHH--hH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 040323 96 TRRASKYAIQQILLTS----KAEKI-NFMNLLVYMAPMAASIFLPFTLYI--EG--IFIVYLLLGNATIAYLVNLTKFLV 166 (228)
Q Consensus 96 ~~~a~~~v~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
..+-.+.++++|.++. +++++ ++..+...|...+.++.....-.+ |. ...+|---..++.......+.+.+
T Consensus 24 ~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yea 103 (327)
T KOG1581|consen 24 ATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEA 103 (327)
T ss_pred HHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHH
Confidence 4556677888877653 12334 334444455544444432222111 11 123333333344444455556788
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323 167 RKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 167 ~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~ 223 (228)
+|++|=.+..+.-+.|-+-..+++.++.+.+.++....-..++-+|+..+...++.+
T Consensus 104 LKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 104 LKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 999999999999999999999999999999999999999999999998887765443
No 94
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.48 E-value=0.12 Score=43.69 Aligned_cols=117 Identities=12% Similarity=0.191 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040323 84 YLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTK 163 (228)
Q Consensus 84 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
+..|.++++.|++..+...++.|+-..+.+ ....-+-+. +.....| +.||...+.-..+=..|++.
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~----~~~~ra~~g--------g~~yl~~--~~Ww~G~ltm~vGei~NFaA 84 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKRAG----ASGLRAGEG--------GYGYLKE--PLWWAGMLTMIVGEIANFAA 84 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHHHh----hhcccccCC--------Ccchhhh--HHHHHHHHHHHHHhHhhHHH
Confidence 467888899998888888888887643211 100000000 0011122 45666555555666677665
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 164 ~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
| ...++.-++.++.+.-+...+++..+++|.++....+|++++++|....-
T Consensus 85 Y---aFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 85 Y---AFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred H---hhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 4 34567777788888999999999999999999999999999999986543
No 95
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=88.35 E-value=0.72 Score=36.51 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 159 VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
.|+-+..++++.+|+.++-+..-+..+..+++++.+||++...-++..++.+.|++...
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia 124 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA 124 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEE
Confidence 45666778999999999999999999999999999999999888888888888876544
No 96
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=86.95 E-value=1.3 Score=35.47 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhh
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVL 75 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l 75 (228)
+...+.++++.+++.++++|+++..++.+..+++.|+.+
T Consensus 183 ~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 183 FVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 677889999999999999999999999999999988754
No 97
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=83.29 E-value=3.8 Score=34.38 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=47.0
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHH
Q 040323 163 KFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLY 216 (228)
Q Consensus 163 ~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~ 216 (228)
.+..+..++|....+..-.-.++.-+.+..+++.+++..||.|+..+.+|....
T Consensus 103 m~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviV 156 (372)
T KOG3912|consen 103 MYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIV 156 (372)
T ss_pred HHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhee
Confidence 344566678888888888889999999999999999999999999999998654
No 98
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=78.14 E-value=2.3 Score=29.99 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=24.6
Q ss_pred HHHHHHHhcCcccccchhHHHHHHHHHHH
Q 040323 187 AVVLVMIFKNPVTVMGMTEFVVTTMIAVL 215 (228)
Q Consensus 187 ~v~~~~~~ge~~s~~~~~G~~l~~~g~~~ 215 (228)
+..+++++||++++.+..|.++++.++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 44578899999999999999999888653
No 99
>PRK02237 hypothetical protein; Provisional
Probab=77.71 E-value=5.6 Score=28.21 Aligned_cols=46 Identities=7% Similarity=-0.101 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323 174 TLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV 219 (228)
Q Consensus 174 ~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~ 219 (228)
..+..+-.--+.+.++++.+-|++||...++|..+++.|+...-+.
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 3455556667778899999999999999999999999999765443
No 100
>PRK02237 hypothetical protein; Provisional
Probab=77.47 E-value=6.2 Score=28.00 Aligned_cols=47 Identities=6% Similarity=-0.036 Sum_probs=37.5
Q ss_pred HHHHH-HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323 32 TSLRY-AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN 78 (228)
Q Consensus 32 ~~l~~-~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~ 78 (228)
.+-.| .-....-+...+..+.+.|+||++..+++..+.++|+.++..
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 44444 444556666778999999999999999999999999988754
No 101
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=76.91 E-value=3.9 Score=28.91 Aligned_cols=49 Identities=8% Similarity=0.018 Sum_probs=39.2
Q ss_pred hHHHHHH-HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323 30 GNTSLRY-AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN 78 (228)
Q Consensus 30 ~~~~l~~-~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~ 78 (228)
.+.+-.| .-....-+...+..+.+.|+||++..+++..+.++|+.++..
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 3444444 445666677888999999999999999999999999988754
No 102
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=76.49 E-value=3 Score=35.57 Aligned_cols=121 Identities=7% Similarity=0.049 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHH--hHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 040323 96 TRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYI--EGI-----FIVYLLLGNATIAYLVNLTKFLVRK 168 (228)
Q Consensus 96 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
.+....+++.|+.+++. .-.-|+.+...+...+........... +++ ..+.-++-.++............++
T Consensus 27 ~~~v~~~~~nK~il~~~-~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~ 105 (316)
T KOG1441|consen 27 VLSVGVIILNKYILSKY-GFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLS 105 (316)
T ss_pred hhheeeEEeeHhhhccC-CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhh
Confidence 34444555667776421 222333333333333333333322221 111 2345555556666666666777899
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcCcccc----------------------cchhHHHHHHHHHHHHH
Q 040323 169 HTCTLTLQVLGNAKAALAAVVLVMIFKNPVTV----------------------MGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 169 ~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~----------------------~~~~G~~l~~~g~~~~~ 217 (228)
+++.....++-.++|++.+++++++.+|+.+. .++.|....+.+.....
T Consensus 106 ~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~a 176 (316)
T KOG1441|consen 106 YVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFA 176 (316)
T ss_pred ccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876 56677777777765543
No 103
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=76.39 E-value=13 Score=26.23 Aligned_cols=30 Identities=7% Similarity=0.002 Sum_probs=24.9
Q ss_pred HHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323 47 AISTFLLTCKKEFAEVYYALMPVVLVIVLA 76 (228)
Q Consensus 47 ~il~~l~~~~~~~~~~~~~~~l~~~G~~l~ 76 (228)
..++.+++||+++++...|-++.+.++.++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 467788999999999999998887776553
No 104
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=75.31 E-value=1.1 Score=36.69 Aligned_cols=128 Identities=10% Similarity=0.034 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHH
Q 040323 87 GFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGI----FIVYLLLGNATIAYLVNLT 162 (228)
Q Consensus 87 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 162 (228)
+++.+++=++.|+.--....|. .-+|.+-.--+. ++++.+....+++..| +.+..-..+|..=...+..
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~------GG~p~qQ~lGtT-~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~ 75 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF------GGKPYQQTLGTT-LGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQAN 75 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec------CCChhHhhhhcc-HHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhh
Confidence 4566677777777666655554 123333332222 3344333333322222 2222333333322223334
Q ss_pred HHHHHhccchhHHHHHH-HHHHHHHHHHHHHHhcCcccccch----hHHHHHHHHHHHHHhhhh
Q 040323 163 KFLVRKHTCTLTLQVLG-NAKAALAAVVLVMIFKNPVTVMGM----TEFVVTTMIAVLYSKVKK 221 (228)
Q Consensus 163 ~~~~~~~~~~~~~s~~~-~~~~v~~~v~~~~~~ge~~s~~~~----~G~~l~~~g~~~~~~~k~ 221 (228)
.+..++..+..++..+. -++-+-+.+++++.|+|-.++.+. +..++++.|+.+-.+.++
T Consensus 76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 45555554444443332 356677889999999999987765 456667777776666554
No 105
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=74.23 E-value=14 Score=30.30 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323 15 KIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLA 76 (228)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~ 76 (228)
++..+++.-+++-.+......+ ++..+--+|+.+.+.+++..+.+.+||++..+++.++..-
T Consensus 243 ~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 243 DLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 3444444444433333333333 4455566789999999999999999999999999988763
No 106
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=73.43 E-value=6.5 Score=27.82 Aligned_cols=46 Identities=2% Similarity=-0.162 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323 174 TLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV 219 (228)
Q Consensus 174 ~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~ 219 (228)
..+..+-.--+.+.++++.+=|++|+...++|..+++.|+...-+.
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3455555667888999999999999999999999999998765443
No 107
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=72.96 E-value=62 Score=28.00 Aligned_cols=129 Identities=11% Similarity=0.011 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHH------------HHHHHHHHH
Q 040323 85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGI------------FIVYLLLGN 152 (228)
Q Consensus 85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~ 152 (228)
..|+++..+++++.+.+.+=.||. ++.+++..=..+..++-++.-+.....+.| ..+...++.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-----k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-----KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 579999999999999999888876 456666655555555544432222222222 112222222
Q ss_pred HHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHhc-------CcccccchhHHHHHHHHHHHHHhh
Q 040323 153 ATIAYLVNLTKFLVRKHTC-TLTLQVLGNAKAALAAVVLVMIFK-------NPVTVMGMTEFVVTTMIAVLYSKV 219 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~v~~~v~~~~~~g-------e~~s~~~~~G~~l~~~g~~~~~~~ 219 (228)
..-+.. +...=..+++++ ++..++.-=+..+++.++--++.| ++-....++|.++++.|+....+.
T Consensus 81 ~lWGIG-gltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 81 VLWGIG-GLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHhcc-hhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 222211 111112344433 223334444444455555444433 233457899999999999887654
No 108
>PRK10655 potE putrescine transporter; Provisional
Probab=71.47 E-value=73 Score=28.17 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=17.7
Q ss_pred cchhHHHHHHHHHHHHHhhhhhhcc
Q 040323 201 MGMTEFVVTTMIAVLYSKVKKRFKI 225 (228)
Q Consensus 201 ~~~~G~~l~~~g~~~~~~~k~~~~~ 225 (228)
....|..+.+.|...|-...+|.+.
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (438)
T PRK10655 409 AMLYGSIVTFLGWTLYGLISPRFEL 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567899999999999665444433
No 109
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=70.84 E-value=76 Score=28.14 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhc
Q 040323 204 TEFVVTTMIAVLYSKVKKRFK 224 (228)
Q Consensus 204 ~G~~l~~~g~~~~~~~k~~~~ 224 (228)
.+..+++.|...|-..|+|++
T Consensus 419 ~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 419 CAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHHHHHhhhHHhheechhh
Confidence 578888889887765554443
No 110
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=70.21 E-value=41 Score=24.94 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHH----HhccccchHHHHHHHHHhhhhhh
Q 040323 40 AATLFFNAISTFL----LTCKKEFAEVYYALMPVVLVIVL 75 (228)
Q Consensus 40 ~~~Pv~~~il~~l----~~~~~~~~~~~~~~~l~~~G~~l 75 (228)
.-.-+...+++.+ .-|+++++++.+++.+.++|+.+
T Consensus 99 ~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 99 AGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3344556677774 45678899999999999999864
No 111
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.53 E-value=22 Score=24.85 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=25.8
Q ss_pred HHHHHHHhcCcccccchhHHHHHHHHHHHH
Q 040323 187 AVVLVMIFKNPVTVMGMTEFVVTTMIAVLY 216 (228)
Q Consensus 187 ~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~ 216 (228)
+-.|++.++|++.+.++.|..++..|+.+.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 446888999999999999999998888654
No 112
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=65.16 E-value=31 Score=24.33 Aligned_cols=48 Identities=6% Similarity=-0.053 Sum_probs=37.4
Q ss_pred HHHHH-HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC
Q 040323 32 TSLRY-AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN 79 (228)
Q Consensus 32 ~~l~~-~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~ 79 (228)
.+-.| .-....-+...+..+.+.|++|++..+++..+.++|+.++..+
T Consensus 57 ~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 57 FGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 44444 3445566677888999999999999999999999998876543
No 113
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.86 E-value=29 Score=24.20 Aligned_cols=29 Identities=3% Similarity=-0.024 Sum_probs=25.5
Q ss_pred HHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323 48 ISTFLLTCKKEFAEVYYALMPVVLVIVLA 76 (228)
Q Consensus 48 il~~l~~~~~~~~~~~~~~~l~~~G~~l~ 76 (228)
.++.+++||+.++..+.+-++...|+.++
T Consensus 85 ~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 85 PFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999888888765
No 114
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.17 E-value=1.3e+02 Score=25.74 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhcccccCCh-HHHHHHhhHHHHHHHHHHHHH--HhH-------HHHHH--HHHHHHHHHHHHHHHHHHH
Q 040323 99 ASKYAIQQILLTSKAEKINF-MNLLVYMAPMAASIFLPFTLY--IEG-------IFIVY--LLLGNATIAYLVNLTKFLV 166 (228)
Q Consensus 99 a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~ 166 (228)
.+-.+..|..+.+ .+++. ..++.+|...+++.....-.. .+. .+.|. -+++.+ .-++....
T Consensus 25 ~lm~vvNK~vls~--y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~-----~i~t~~~s 97 (314)
T KOG1444|consen 25 ILMTVVNKIVLSS--YNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVG-----MLFTGSKS 97 (314)
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHH-----HHHHcccc
Confidence 3344445555542 22333 334457887777665544332 111 11222 233322 22334566
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323 167 RKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217 (228)
Q Consensus 167 ~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~ 217 (228)
+++.....+.++....++...+...+++|..++...+.....+++|...+.
T Consensus 98 lk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 98 LKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred ccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999999999999999999976654
No 115
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=52.38 E-value=17 Score=24.67 Aligned_cols=29 Identities=10% Similarity=-0.124 Sum_probs=23.0
Q ss_pred cccccchhHHHHHHHHHHHHHhhhhhhcc
Q 040323 197 PVTVMGMTEFVVTTMIAVLYSKVKKRFKI 225 (228)
Q Consensus 197 ~~s~~~~~G~~l~~~g~~~~~~~k~~~~~ 225 (228)
..++..++|.++.+.|..+|..++.|.+.
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev 32 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPEV 32 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcch
Confidence 46788999999999999999876655443
No 116
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=45.17 E-value=2.2e+02 Score=25.20 Aligned_cols=40 Identities=20% Similarity=0.119 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323 180 NAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV 219 (228)
Q Consensus 180 ~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~ 219 (228)
..-++++.+...+..-.........+.+.+..|...|-..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 427 (445)
T PRK10644 388 LAVTLIAFVYCIWAVVGSGAKEVMWSFVTLMVITAFYALN 427 (445)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544432111223445555566666666443
No 117
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=44.07 E-value=2.4e+02 Score=25.28 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=17.5
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhh
Q 040323 200 VMGMTEFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 200 ~~~~~G~~l~~~g~~~~~~~k~~~ 223 (228)
.....|.++...|...|-+.++++
T Consensus 416 ~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 416 KYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356678999999988887655444
No 118
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=43.75 E-value=2.3e+02 Score=25.04 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=16.6
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhhcccCC
Q 040323 200 VMGMTEFVVTTMIAVLYSKVKKRFKISTH 228 (228)
Q Consensus 200 ~~~~~G~~l~~~g~~~~~~~k~~~~~~~~ 228 (228)
.+...+..+.+.+...+.+.+|+.++|+|
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T PRK10435 405 SSFELAGTFIVSLIILMFYARKMHERQSH 433 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhcc
Confidence 34455566666666666665555555544
No 119
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=42.46 E-value=20 Score=19.39 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhhhhccc
Q 040323 206 FVVTTMIAVLYSKVKKRFKIS 226 (228)
Q Consensus 206 ~~l~~~g~~~~~~~k~~~~~~ 226 (228)
+++++.|...+.+.|.+++..
T Consensus 6 i~L~l~ga~f~~fKKyQ~~vn 26 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNHVN 26 (33)
T ss_pred ehhhhhhHHHHHHHHHHHHHh
Confidence 357788888888888877653
No 120
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=41.94 E-value=3.4e+02 Score=26.41 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323 36 YAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLA 76 (228)
Q Consensus 36 ~~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~ 76 (228)
.++..+.|+-.+.++.....+|.+.+.+.+.+-.++|.+-.
T Consensus 14 ~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 14 VIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 36778899988888888877776555566555555565533
No 121
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=41.81 E-value=28 Score=18.62 Aligned_cols=11 Identities=0% Similarity=0.205 Sum_probs=5.5
Q ss_pred cccchhHHHHH
Q 040323 199 TVMGMTEFVVT 209 (228)
Q Consensus 199 s~~~~~G~~l~ 209 (228)
+...++|.+++
T Consensus 11 ~~~~~~G~~l~ 21 (34)
T TIGR01167 11 SLLLLLGLLLL 21 (34)
T ss_pred HHHHHHHHHHH
Confidence 34555666333
No 122
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=40.45 E-value=2.2 Score=35.25 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHH
Q 040323 153 ATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLY 216 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~ 216 (228)
++.-.-.|+....+-++++-+.++++.+--.+...+++|++++.+-.+.++.|.++++.|+...
T Consensus 85 a~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~Gvvmv 148 (336)
T KOG2766|consen 85 AFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMV 148 (336)
T ss_pred eEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEE
Confidence 3333445555556778899999999999999999999999999999999999999999998653
No 123
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=39.43 E-value=1.4e+02 Score=22.51 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=16.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHh
Q 040323 170 TCTLTLQVLGNAKAALAAVVLVMIF 194 (228)
Q Consensus 170 ~~~~~~s~~~~~~~v~~~v~~~~~~ 194 (228)
-|.+..+.+-|+-|.++.+++.+++
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777666663
No 124
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=35.68 E-value=30 Score=20.65 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhhhhhc
Q 040323 205 EFVVTTMIAVLYSKVKKRFK 224 (228)
Q Consensus 205 G~~l~~~g~~~~~~~k~~~~ 224 (228)
-+.++++|+++|.+.+++++
T Consensus 18 ~~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 18 YLALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHHhCCCcch
Confidence 35788899999988765543
No 125
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=33.96 E-value=1.1e+02 Score=22.24 Aligned_cols=25 Identities=16% Similarity=0.022 Sum_probs=16.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHh
Q 040323 170 TCTLTLQVLGNAKAALAAVVLVMIF 194 (228)
Q Consensus 170 ~~~~~~s~~~~~~~v~~~v~~~~~~ 194 (228)
-+....+++.|.-|++..+.+.++-
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777766653
No 126
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=33.61 E-value=2.7e+02 Score=22.87 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=50.5
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323 165 LVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 165 ~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
..++..+....+++-++..+.....-..+||.+++..+....+++++..+..+|...+
T Consensus 87 KsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q 144 (309)
T COG5070 87 KSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ 144 (309)
T ss_pred cceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhh
Confidence 4567778888888888888888888999999999999999999999999998887654
No 127
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=33.49 E-value=3e+02 Score=23.35 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCCc
Q 040323 45 FNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPL 82 (228)
Q Consensus 45 ~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~ 82 (228)
.+.+++++++.++++-...-+.++++.|+.+-.+++.+
T Consensus 299 vTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 299 VTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred HHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 56789999999999999999999999999997766543
No 128
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=32.15 E-value=42 Score=19.87 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 040323 205 EFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 205 G~~l~~~g~~~~~~~k~~~ 223 (228)
-..+++.|++++.++++++
T Consensus 17 ~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHcccch
Confidence 3455677888888776644
No 129
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=29.91 E-value=1.2e+02 Score=21.59 Aligned_cols=39 Identities=21% Similarity=0.085 Sum_probs=32.8
Q ss_pred HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhh
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVL 75 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l 75 (228)
+-.+++-.|+.+.+..+..|...++.+.+..+++.|+.+
T Consensus 84 v~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 84 VTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred ecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 666888889999998887777888999999999998765
No 130
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=28.19 E-value=87 Score=20.18 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHHhhhhhh
Q 040323 202 GMTEFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 202 ~~~G~~l~~~g~~~~~~~k~~~ 223 (228)
-++++.+++.|.++|....+++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4577788888888887654443
No 131
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.40 E-value=9.1 Score=32.08 Aligned_cols=51 Identities=8% Similarity=0.012 Sum_probs=42.9
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHH
Q 040323 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAV 214 (228)
Q Consensus 164 ~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~ 214 (228)
.+|++.++..-+.+-..+..+++++++.++++++-+..-..++.+++.|..
T Consensus 120 nlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 120 NLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred ceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhe
Confidence 466788887777777788899999999999999999888888888887754
No 132
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=26.19 E-value=22 Score=29.86 Aligned_cols=81 Identities=7% Similarity=0.123 Sum_probs=0.0
Q ss_pred Hhccc-cchHHHHHHHHHhhhhhhhcc-C-CCcchHHHHHHHHHHHHH-HHH--HHHHHHHHhhcccccCChHHHHHHhh
Q 040323 53 LTCKK-EFAEVYYALMPVVLVIVLASN-N-EPLFYLLGFLVCIGSTTR-RAS--KYAIQQILLTSKAEKINFMNLLVYMA 126 (228)
Q Consensus 53 ~~~~~-~~~~~~~~~~l~~~G~~l~~~-~-~~~~~~~G~~~~l~s~~~-~a~--~~v~~~~~~~~~~~~~~~~~~~~~~~ 126 (228)
++|+| .-..-.++++++++-..++.. . ..+.-+.|+++.+++... .++ |.-+.| +..-+.|+++++..
T Consensus 71 lF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym~lLr------~~GAs~WtiLaFcL 144 (381)
T PF05297_consen 71 LFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYMWLLR------ELGASFWTILAFCL 144 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHH
Confidence 33444 345555555555555554322 1 122235676555444322 222 222222 33467888887665
Q ss_pred HHHH-HHHHHHHHH
Q 040323 127 PMAA-SIFLPFTLY 139 (228)
Q Consensus 127 ~~~~-~~l~~~~~~ 139 (228)
.+.. +++++++..
T Consensus 145 AF~LaivlLIIAv~ 158 (381)
T PF05297_consen 145 AFLLAIVLLIIAVL 158 (381)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 5553 333444433
No 133
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=26.09 E-value=41 Score=19.34 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHhhhhh
Q 040323 204 TEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 204 ~G~~l~~~g~~~~~~~k~~ 222 (228)
+|.++.+++..++-+.|++
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 3555666666666555444
No 134
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=25.80 E-value=49 Score=23.38 Aligned_cols=44 Identities=7% Similarity=-0.146 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323 176 QVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV 219 (228)
Q Consensus 176 s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~ 219 (228)
+-.+-.-.+.+..+.+++=|..++...++|.++++.|+....+.
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 34444556677778888889999999999999999997654433
No 135
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=24.64 E-value=5.5e+02 Score=23.58 Aligned_cols=26 Identities=4% Similarity=-0.129 Sum_probs=15.2
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHH
Q 040323 168 KHTCTLTLQVLGNAKAALAAVVLVMI 193 (228)
Q Consensus 168 ~~~~~~~~s~~~~~~~v~~~v~~~~~ 193 (228)
.|.-+.......-..|+-+.++|.+.
T Consensus 342 GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 342 GRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666666767655
No 136
>PRK02935 hypothetical protein; Provisional
Probab=22.50 E-value=2.9e+02 Score=19.58 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCc---ccccchhHHHHHHHHHHHHHhhh
Q 040323 182 KAALAAVVLVMIFKNP---VTVMGMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 182 ~~v~~~v~~~~~~ge~---~s~~~~~G~~l~~~g~~~~~~~k 220 (228)
--+....+| ++|+++ .+....+|.+.++.+..+|-|.-
T Consensus 22 iG~~vMy~G-iff~~~~~~m~ifm~~G~l~~l~S~vvYFwiG 62 (110)
T PRK02935 22 IGFIVMYLG-IFFRESIIIMTIFMLLGFLAVIASTVVYFWIG 62 (110)
T ss_pred HHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445 333444 25567788888888888887753
No 137
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=20.50 E-value=1.6e+02 Score=16.13 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=15.1
Q ss_pred HHhHHHHHHHHHHHHHHhccccchH
Q 040323 37 AVGAATLFFNAISTFLLTCKKEFAE 61 (228)
Q Consensus 37 ~l~~~~Pv~~~il~~l~~~~~~~~~ 61 (228)
++-...-+...++..++.|+|++..
T Consensus 7 iLDgiL~iYgiiiT~L~~R~K~~~~ 31 (33)
T PF11628_consen 7 ILDGILFIYGIIITALYCREKFSKS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3334444555677778888887654
No 138
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=20.28 E-value=75 Score=19.11 Aligned_cols=23 Identities=9% Similarity=-0.090 Sum_probs=15.3
Q ss_pred ccchhHHHHHHHHHHHHHhhhhh
Q 040323 200 VMGMTEFVVTTMIAVLYSKVKKR 222 (228)
Q Consensus 200 ~~~~~G~~l~~~g~~~~~~~k~~ 222 (228)
+...+|..+++.|.+....+++|
T Consensus 27 P~~~~Gi~Lii~g~v~r~~~rkk 49 (49)
T PF11384_consen 27 PAILIGIGLIISGGVGRRRRRKK 49 (49)
T ss_pred HHHHHhHHHHhhhhhhhhhhccC
Confidence 34567888888887766655543
No 139
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=20.03 E-value=83 Score=18.78 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhc
Q 040323 203 MTEFVVTTMIAVLYSKVKKRFK 224 (228)
Q Consensus 203 ~~G~~l~~~g~~~~~~~k~~~~ 224 (228)
+-|..++=.|.++|...|++.+
T Consensus 8 vSG~GLig~G~Yv~~~ark~~k 29 (47)
T PF15055_consen 8 VSGGGLIGAGAYVYAQARKRMK 29 (47)
T ss_pred ecccchHHHHHHHHHHHhhccc
Confidence 3456667778888888877754
Done!