Query 040323
Match_columns 228
No_of_seqs 106 out of 1042
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 11:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 1.5E-07 5.3E-12 69.2 7.6 62 159-220 43-105 (137)
2 3b5d_A Multidrug transporter E 98.5 3.8E-06 1.3E-10 59.4 13.1 60 161-220 45-105 (110)
3 3b5d_A Multidrug transporter E 97.8 0.00019 6.4E-09 50.6 9.2 59 21-79 38-104 (110)
4 2i68_A Protein EMRE; transmemb 97.5 0.00016 5.5E-09 52.9 5.7 58 21-78 38-103 (137)
5 3l1l_A Arginine/agmatine antip 55.6 42 0.0014 28.1 7.9 23 201-223 409-431 (445)
6 2h3o_A MERF; membrane protein, 46.2 6.1 0.00021 24.0 0.7 45 180-224 11-57 (61)
7 2l2t_A Receptor tyrosine-prote 38.6 31 0.0011 19.4 2.9 14 212-225 28-41 (44)
8 2ks1_B Epidermal growth factor 32.8 43 0.0015 18.8 2.8 11 214-224 31-41 (44)
9 2hac_A T-cell surface glycopro 12.8 1.4E+02 0.0048 15.6 2.0 23 38-60 8-30 (33)
10 4dve_A Biotin transporter BIOY 12.1 4.7E+02 0.016 19.6 7.8 132 5-140 9-150 (198)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.58 E-value=1.5e-07 Score=69.15 Aligned_cols=62 Identities=5% Similarity=-0.059 Sum_probs=43.9
Q ss_pred HHHHHHHHHhccchhHHHHH-HHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323 159 VNLTKFLVRKHTCTLTLQVL-GNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~s~~-~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k 220 (228)
..+....++++.++..+..+ ..+.|++++++|+++|||++|+.+++|+++++.|++..+..+
T Consensus 43 s~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33445678999999988887 899999999999999999999999999999999999988654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.51 E-value=3.8e-06 Score=59.36 Aligned_cols=60 Identities=5% Similarity=-0.038 Sum_probs=53.2
Q ss_pred HHHHHHHhccchhHHHHH-HHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323 161 LTKFLVRKHTCTLTLQVL-GNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~s~~-~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k 220 (228)
+....++|+.+...+..+ ..+.|+.+.+.++++|||++|+.+++|..+++.|+...+..+
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334567899998888777 899999999999999999999999999999999999988754
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.78 E-value=0.00019 Score=50.56 Aligned_cols=59 Identities=10% Similarity=0.149 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHHHHHH-------HH-hHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC
Q 040323 21 AIFCFSVVCGNTSLRY-------AV-GAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN 79 (228)
Q Consensus 21 ~~~~~~~~~~~~~l~~-------~l-~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~ 79 (228)
+.+..+..+.+.++++ .+ .++.|+++.+.+++++||++++.+++++.+++.|+......
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445555555555555 44 79999999999999999999999999999999999987543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.50 E-value=0.00016 Score=52.91 Aligned_cols=58 Identities=10% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHHHHHHHHhHHHHHH-------HH-hHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323 21 AIFCFSVVCGNTSLRY-------AV-GAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN 78 (228)
Q Consensus 21 ~~~~~~~~~~~~~l~~-------~l-~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~ 78 (228)
+.++.+..+.+.++++ .+ .++.|+++.++++++++|++++.+++++.++++|+.+...
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3455555555666655 44 7999999999999999999999999999999999998754
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=55.60 E-value=42 Score=28.09 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=17.0
Q ss_pred cchhHHHHHHHHHHHHHhhhhhh
Q 040323 201 MGMTEFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 201 ~~~~G~~l~~~g~~~~~~~k~~~ 223 (228)
....|.++++.|...|...++|+
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 45668888899998887665544
No 6
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=46.21 E-value=6.1 Score=24.03 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhcCcccccc--hhHHHHHHHHHHHHHhhhhhhc
Q 040323 180 NAKAALAAVVLVMIFKNPVTVMG--MTEFVVTTMIAVLYSKVKKRFK 224 (228)
Q Consensus 180 ~~~~v~~~v~~~~~~ge~~s~~~--~~G~~l~~~g~~~~~~~k~~~~ 224 (228)
+..|+.+++.|..=+....++.. ++=..-.+.|..+|...|+|++
T Consensus 11 C~tPvLvil~G~~Glsa~~~wLd~vl~P~l~~figl~~Y~~~r~~~~ 57 (61)
T 2h3o_A 11 SFTPVLVILLGVVGLSALTGYLDYVLLPALAIFIGLTIYAIQRKRQA 57 (61)
T ss_dssp -----CHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34455555555444433333332 1122333448889988777764
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=38.63 E-value=31 Score=19.42 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=5.7
Q ss_pred HHHHHHhhhhhhcc
Q 040323 212 IAVLYSKVKKRFKI 225 (228)
Q Consensus 212 g~~~~~~~k~~~~~ 225 (228)
+..++-++++|++.
T Consensus 28 ~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 28 LTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHTTCSSC
T ss_pred HHHHHHhhhhhhhh
Confidence 33334444444433
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.81 E-value=43 Score=18.82 Aligned_cols=11 Identities=0% Similarity=-0.064 Sum_probs=4.4
Q ss_pred HHHHhhhhhhc
Q 040323 214 VLYSKVKKRFK 224 (228)
Q Consensus 214 ~~~~~~k~~~~ 224 (228)
.++-++++|++
T Consensus 31 ~~~~~RRr~~~ 41 (44)
T 2ks1_B 31 IGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHTTTCC
T ss_pred HHHHhhhhHhh
Confidence 33444444433
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=12.82 E-value=1.4e+02 Score=15.56 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=13.9
Q ss_pred HhHHHHHHHHHHHHHHhccccch
Q 040323 38 VGAATLFFNAISTFLLTCKKEFA 60 (228)
Q Consensus 38 l~~~~Pv~~~il~~l~~~~~~~~ 60 (228)
+-...-+...++..++.|+|+++
T Consensus 8 LDgiL~iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 8 LDGILFIYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444445556677777777764
No 10
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=12.12 E-value=4.7e+02 Score=19.58 Aligned_cols=132 Identities=8% Similarity=-0.051 Sum_probs=0.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHhHH-HHHH----HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC
Q 040323 5 KTILSQKQFLKIFALSAIFCFSVVCGNT-SLRY----AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN 79 (228)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~----~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~ 79 (228)
|..++++..|++...+++-+........ +..- +=..++.+.+++.+.++..++=.....+-++++.+|+=+...+
T Consensus 9 ~am~~~~k~r~l~~~alfaAliavla~i~~Ipip~~pVPiTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg 88 (198)
T 4dve_A 9 HAMTNNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGG 88 (198)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCBCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTT
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCC
Q ss_pred CCcch-----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHH
Q 040323 80 EPLFY-----LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYI 140 (228)
Q Consensus 80 ~~~~~-----~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (228)
..... ..|++++..-+....-+..-..+. +.+.+...........+....-.....|
T Consensus 89 ~gG~~~l~gPTgGYLiGF~~aA~v~G~l~~~~~~----~~~~~~~~~~~~~~l~G~~~iy~~G~~w 150 (198)
T 4dve_A 89 NGGAASFLGPSGGYRIAWLFTPFLIGFFLKKLKI----TTSQNWFGELIIVLLFGVIFVDFVGAIW 150 (198)
T ss_dssp BCCSGGGGSTTHHHHHHHHHHHHHHHHHHHHTTG----GGSSCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCchhHHhcchhHHHHHHHHHHHHHHHHHHHccc----cchhhHHHHHHHHHHHHHHHHHHHHHHH
Done!