Query 040323
Match_columns 228
No_of_seqs 106 out of 1042
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 11:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040323.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040323hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 31.3 23 0.0017 16.0 3.1 21 203-223 2-22 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 19.6 1.5E+02 0.011 21.3 7.1 51 15-65 4-57 (248)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 9.7 2.6E+02 0.019 18.8 7.6 50 167-216 60-109 (199)
4 d1r3jc_ f.14.1.1 (C:) Potassiu 9.0 1.2E+02 0.0087 18.2 2.9 11 218-228 93-103 (103)
5 d1iwga8 f.35.1.1 (A:513-566,A: 5.4 4.5E+02 0.032 17.8 8.6 30 184-213 95-124 (222)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 5.4 2.6E+02 0.019 16.5 3.1 13 208-220 41-53 (100)
7 d3cx5d2 f.23.11.1 (D:261-307) 5.3 2.4E+02 0.018 14.6 2.6 18 8-25 6-23 (47)
8 d2iuba2 f.17.3.1 (A:286-349) M 5.0 1.8E+02 0.013 15.7 1.9 13 210-222 51-63 (64)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 4.1 1E+02 0.0073 18.3 0.2 15 208-222 30-44 (91)
10 d1pv7a_ f.38.1.2 (A:) Lactose 4.0 6E+02 0.043 17.4 15.3 12 163-174 396-407 (417)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=31.29 E-value=23 Score=15.96 Aligned_cols=21 Identities=14% Similarity=0.255 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhh
Q 040323 203 MTEFVVTTMIAVLYSKVKKRF 223 (228)
Q Consensus 203 ~~G~~l~~~g~~~~~~~k~~~ 223 (228)
++|.+++.+|.++|...++.+
T Consensus 2 vlgli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeehHHHHHHHHHHHHHHhc
Confidence 467888878877777655443
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=19.56 E-value=1.5e+02 Score=21.29 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH---HHhHHHHHHHHHHHHHHhccccchHHHHH
Q 040323 15 KIFALSAIFCFSVVCGNTSLRY---AVGAATLFFNAISTFLLTCKKEFAEVYYA 65 (228)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~---~l~~~~Pv~~~il~~l~~~~~~~~~~~~~ 65 (228)
|+..++++..+..+.....+.. .+....-+.+.+..++++.+|.-..+++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccCccceehhh
Confidence 4566677766665544444444 55566667777888999988877666653
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.67 E-value=2.6e+02 Score=18.81 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=34.4
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHH
Q 040323 167 RKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLY 216 (228)
Q Consensus 167 ~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~ 216 (228)
.+...+.........-.+........++|.+++.....+..+.+....-+
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 34455555556666666667777778889999988888887776665433
No 4
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.00 E-value=1.2e+02 Score=18.20 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=5.2
Q ss_pred hhhhhhcccCC
Q 040323 218 KVKKRFKISTH 228 (228)
Q Consensus 218 ~~k~~~~~~~~ 228 (228)
..++++++++|
T Consensus 93 ~~~~~~~rr~h 103 (103)
T d1r3jc_ 93 FVGREQERRGH 103 (103)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhcCC
Confidence 33444455554
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.42 E-value=4.5e+02 Score=17.80 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCcccccchhHHHHHHHHH
Q 040323 184 ALAAVVLVMIFKNPVTVMGMTEFVVTTMIA 213 (228)
Q Consensus 184 v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~ 213 (228)
+.+.+.+..+.|.+++....+|.++.+.-.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~ 124 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLS 124 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhh
Confidence 456667777889999998888887765544
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.37 E-value=2.6e+02 Score=16.52 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhh
Q 040323 208 VTTMIAVLYSKVK 220 (228)
Q Consensus 208 l~~~g~~~~~~~k 220 (228)
+.+.+...|...|
T Consensus 41 ~~V~~~l~~~~~~ 53 (100)
T d3dtub2 41 IFVTLLILYAVWR 53 (100)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3345555555433
No 7
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.31 E-value=2.4e+02 Score=14.57 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=8.2
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 040323 8 LSQKQFLKIFALSAIFCF 25 (228)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (228)
+++-.++.++.+++++..
T Consensus 6 RK~mg~K~~~i~s~l~~~ 23 (47)
T d3cx5d2 6 RKRLGLKTVIILSSLYLL 23 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444544555544443
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.97 E-value=1.8e+02 Score=15.68 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhhh
Q 040323 210 TMIAVLYSKVKKR 222 (228)
Q Consensus 210 ~~g~~~~~~~k~~ 222 (228)
..+...+-+.|+|
T Consensus 51 ~~~~~~~~~f~rk 63 (64)
T d2iuba2 51 VIAVIMVVYFKKK 63 (64)
T ss_dssp HHHHHHHTTTTSC
T ss_pred HHHHHHHHHHhcc
Confidence 3344444444433
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.05 E-value=1e+02 Score=18.34 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhhhh
Q 040323 208 VTTMIAVLYSKVKKR 222 (228)
Q Consensus 208 l~~~g~~~~~~~k~~ 222 (228)
+.+.|.+.|...|.|
T Consensus 30 v~V~~~~~~~~~ryR 44 (91)
T d1fftb2 30 IPAILMAVGFAWKYR 44 (91)
T ss_dssp THHHHHHHTTTTTTT
T ss_pred HHHHHHHHhhheeee
Confidence 345556666554443
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.99 E-value=6e+02 Score=17.39 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=5.8
Q ss_pred HHHHHhccchhH
Q 040323 163 KFLVRKHTCTLT 174 (228)
Q Consensus 163 ~~~~~~~~~~~~ 174 (228)
....+++-+|..
T Consensus 396 ~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 396 SVFTLSGPGPLS 407 (417)
T ss_dssp HHHHSCCSSCTT
T ss_pred HHHhhcCCCccc
Confidence 344455555543
Done!