BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040324
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 204 bits (520), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 202/364 (55%), Gaps = 20/364 (5%)
Query: 101 RCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVG 160
R L GS +YLG D D+L+KY SR GTL +H ELEE ++ +VG
Sbjct: 44 RVLMFGSNSYLGLTT-DTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG 102
Query: 161 KPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
K AAI+F G+ +N L LMG+ I+ D +H SI++G+R S + + + HN
Sbjct: 103 KEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGHNNM--- 159
Query: 221 EEVLREQIAEGQPRTRRPWKKI-MVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAH 279
E LR ++ +R P ++ +GI+SMEG++ LPE+ +I + A +D+AH
Sbjct: 160 -EDLRAKL------SRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAH 212
Query: 280 SIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLY 339
S+G +G G G G++ DVD++MGTFSKS S GG++AG ++I +LK+N + ++
Sbjct: 213 SLGVIGHKGAGTASHFGLN-DDVDLIMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMF 271
Query: 340 ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP 399
+ S++P + + A++++ E + + ++ +N+++ +++L GF+ LG +SP
Sbjct: 272 SASMTPASVASTLKALEIIQNE------PEHIEKLWKNTDYAKAQLLDHGFD-LGATESP 324
Query: 400 VMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEV 459
++PI + + K ++ V + V PA P + R + A+HT + + EA+E
Sbjct: 325 ILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEK 384
Query: 460 ISRI 463
+ ++
Sbjct: 385 MVKV 388
>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
pdb|3TQX|B Chain B, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
Length = 399
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 195/371 (52%), Gaps = 24/371 (6%)
Query: 103 LNLGSYNYLGFAAADEYCTPRVIDS----LKKYSHSTCSSRVDGGTLALHNELEECVARF 158
LN + NYLG A P +I + +++Y S R GT +H ELE+ ++ F
Sbjct: 46 LNFCANNYLGLAD-----HPALIKTAQTVVEQYGFGXASVRFICGTQTIHKELEKDISEF 100
Query: 159 VGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPS 218
+G I++ + N + L+G IISD LNH SI++G R A +++N
Sbjct: 101 LGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAXG 160
Query: 219 HLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEA 278
LE L+E +G + ++ +G++S +G + L I + +Y A +D++
Sbjct: 161 DLEAKLKEADEKG-------ARFKLIATDGVFSXDGIIADLKSICDLADKYNALVXVDDS 213
Query: 279 HSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSF-GSYGGYIAGSKELIQYLKYNCPAH 337
H++G +G+ GRG E GV VDI+ GT K+ G+ GGY +G KE+I++L+ +
Sbjct: 214 HAVGFIGENGRGTPEYCGV-ADRVDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPY 272
Query: 338 LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND 397
L++ +++P +I A + + E G Q +++ENS +FR+ +K+GF+++ N
Sbjct: 273 LFSNTVAP-----VIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGXEKLGFQLVPGN- 326
Query: 398 SPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEAL 457
P++P+ + + ++ + L++ + +V +P P AR R+ SA HT++ L A+
Sbjct: 327 HPIIPVXLGDAQLATNXADHLLQEGIYVVGFSYPVVPXGKARIRVQXSAVHTQQQLDRAI 386
Query: 458 EVISRIGDLVG 468
E ++G +G
Sbjct: 387 EAFGQVGKKLG 397
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 197/403 (48%), Gaps = 30/403 (7%)
Query: 72 SSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI----DS 127
S D + V+E+ + ++ + + LG+YNY+G P VI ++
Sbjct: 40 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 90
Query: 128 LKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSL 187
L+K+ TC SR+ GT H E+E+ + F G AIVF GY+ N I+ L GKG
Sbjct: 91 LEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 150
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE 247
+I D+ +H SI +G + A I F+HN+ L++ L + P K +VV+E
Sbjct: 151 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGR-------LPKEPAK--LVVLE 201
Query: 248 GIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMG 307
G+YSM G++ L E++ + K++ A +DEAHS+G G GRGV E G++ +D ++G
Sbjct: 202 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 260
Query: 308 TFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRG 367
TFS S G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 261 TFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 314
Query: 368 AQKLARIRENSNFFRSKLQKMGFEVLGDN-DSPVMPIMVYNPAKVSSFSRECLKQNVAIV 426
+K R+ N+ L+ MGF + + DS ++ +M+ + + + + L + +
Sbjct: 315 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 374
Query: 427 TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469
PATP R I A HT + L + G VG+
Sbjct: 375 MARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 197/403 (48%), Gaps = 30/403 (7%)
Query: 72 SSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI----DS 127
S D + V+E+ + ++ + + LG+YNY+G P VI ++
Sbjct: 40 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 90
Query: 128 LKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSL 187
L+K+ T SR+ GT H E+E+ + F G AIVF GY+ N I+ L GKG
Sbjct: 91 LEKFGSGTYGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 150
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE 247
+I D+ +H SI +G + A I F+HN+ L++ L + P K +VV+E
Sbjct: 151 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGR-------LPKEPAK--LVVLE 201
Query: 248 GIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMG 307
G+YSM G++ L E++ + K++ A +DEAHS+G G GRGV E G++ +D ++G
Sbjct: 202 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 260
Query: 308 TFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRG 367
TFSKS G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 261 TFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 314
Query: 368 AQKLARIRENSNFFRSKLQKMGFEVLGDN-DSPVMPIMVYNPAKVSSFSRECLKQNVAIV 426
+K R+ N+ L+ MGF + + DS ++ +M+ + + + + L + +
Sbjct: 315 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 374
Query: 427 TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469
PATP R I A HT + L + G VG+
Sbjct: 375 MARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 197/403 (48%), Gaps = 30/403 (7%)
Query: 72 SSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI----DS 127
S D + V+E+ + ++ + + LG+YNY+G P VI ++
Sbjct: 40 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 90
Query: 128 LKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSL 187
L+K+ T SR+ GT H E+E+ + F G AIVF GY+ N I+ L GKG
Sbjct: 91 LEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 150
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE 247
+I D+ +H SI +G + A I F+HN+ L++ L + P K +VV+E
Sbjct: 151 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGR-------LPKEPAK--LVVLE 201
Query: 248 GIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMG 307
G+YSM G++ L E++ + K++ A +DEAHS+G G GRGV E G++ +D ++G
Sbjct: 202 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 260
Query: 308 TFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRG 367
TFSKS G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 261 TFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 314
Query: 368 AQKLARIRENSNFFRSKLQKMGFEVLGDN-DSPVMPIMVYNPAKVSSFSRECLKQNVAIV 426
+K R+ N+ L+ MGF + + DS ++ +M+ + + + + L + +
Sbjct: 315 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 374
Query: 427 TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469
PATP R I A HT + L + G VG+
Sbjct: 375 MARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 185/370 (50%), Gaps = 26/370 (7%)
Query: 105 LGSYNYLGFAAADEYCTPRVI----DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVG 160
LG+YNY+G P VI ++L+K+ T SR+ GT H E+E+ + F G
Sbjct: 70 LGTYNYMGMT-----FDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYG 124
Query: 161 KPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
AIVF GY+ N I+ L GKG +I D+ +H SI +G + A I F+HN+ L
Sbjct: 125 TTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDL 184
Query: 221 EEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHS 280
++ L + P K +VV+EG+YSM G++ L E++ + K++ A +DEAHS
Sbjct: 185 DKRLGR-------LPKEPAK--LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHS 235
Query: 281 IGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYA 340
+G G GRGV E G++ +D ++GTFSKS G+ GG++ + + ++ C +++
Sbjct: 236 MGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFT 294
Query: 341 TSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDN-DSP 399
S+ P ++I+ ++ +K R+ N+ L+ MGF + + DS
Sbjct: 295 ASLPPSVVATATTSIRKLM------TAHEKRERLWSNARALHGGLKAMGFRLGTETCDSA 348
Query: 400 VMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEV 459
++ +M+ + + + + L + + PATP R I A HT + L +
Sbjct: 349 IVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGM 408
Query: 460 ISRIGDLVGI 469
G VG+
Sbjct: 409 FQAAGRAVGV 418
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 196/403 (48%), Gaps = 30/403 (7%)
Query: 72 SSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI----DS 127
S D + V+E+ + ++ + + LG+YNY+G P VI ++
Sbjct: 40 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 90
Query: 128 LKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSL 187
L+K+ T SR+ GT H E+E+ + F G AIVF GY+ N I+ L GKG
Sbjct: 91 LEKFGSGTWGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 150
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE 247
+I D+ +H SI +G + A I F+HN+ L++ L + P K +VV+E
Sbjct: 151 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGR-------LPKEPAK--LVVLE 201
Query: 248 GIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMG 307
G+YSM G++ L E++ + K++ A +DEAHS+G G GRGV E G++ +D ++G
Sbjct: 202 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 260
Query: 308 TFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRG 367
TFS S G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 261 TFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 314
Query: 368 AQKLARIRENSNFFRSKLQKMGFEVLGDN-DSPVMPIMVYNPAKVSSFSRECLKQNVAIV 426
+K R+ N+ L+ MGF + + DS ++ +M+ + + + + L + +
Sbjct: 315 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 374
Query: 427 TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469
PATP R I A HT + L + G VG+
Sbjct: 375 MARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 183/375 (48%), Gaps = 25/375 (6%)
Query: 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLK----KYSHSTCSSRVDGGTLALHNELEECV 155
S +N + NYLG A P +I + K + S R GT H ELE+ +
Sbjct: 45 SHVINFCANNYLGLA-----NHPDLIAAAKAGXDSHGFGXASVRFICGTQDSHKELEQKL 99
Query: 156 ARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN 215
A F+G AI++ + N + L+G IISD+LNH SI++G R A + +N
Sbjct: 100 AAFLGXEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN 159
Query: 216 TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYL 275
LE L+E G + +++ +G++S +G + L + + +Y A +
Sbjct: 160 DXQELEARLKEAREAGA-------RHVLIATDGVFSXDGVIANLKGVCDLADKYDALVXV 212
Query: 276 DEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSF-GSYGGYIAGSKELIQYLKYNC 334
D++H++G VG+ GRG E V VDI+ GT K+ G+ GGY A KE++++L+
Sbjct: 213 DDSHAVGFVGENGRGSHEYCDV-XGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRS 271
Query: 335 PAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG 394
+L++ S++P I ++ V G++ R+ N+ FR + GF + G
Sbjct: 272 RPYLFSNSLAPAIVAASIKVLEXVEA------GSELRDRLWANARQFREQXSAAGFTLAG 325
Query: 395 DNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLI 454
D ++P+ + + F+RE K+ + + +P P AR R SA+HT E +
Sbjct: 326 -ADHAIIPVXLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQXSAAHTPEQIT 384
Query: 455 EALEVISRIGDLVGI 469
A+E +RIG +G+
Sbjct: 385 RAVEAFTRIGKQLGV 399
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 196/403 (48%), Gaps = 30/403 (7%)
Query: 72 SSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI----DS 127
S D + V+E+ + ++ + + LG+YNY+G P VI ++
Sbjct: 40 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 90
Query: 128 LKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSL 187
L+K+ T SR+ GT H E+E+ + F G AIVF GY+ N I+ L GKG
Sbjct: 91 LEKFGSGTYGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 150
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE 247
+I D+ +H SI +G + A I F+HN+ L++ L + P K +VV+E
Sbjct: 151 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGR-------LPKEPAK--LVVLE 201
Query: 248 GIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMG 307
G+YSM G++ L E++ + K++ A +DEAHS+G G GRGV E G++ +D ++G
Sbjct: 202 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 260
Query: 308 TFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRG 367
TFS S G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 261 TFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 314
Query: 368 AQKLARIRENSNFFRSKLQKMGFEVLGDN-DSPVMPIMVYNPAKVSSFSRECLKQNVAIV 426
+K R+ N+ L+ MGF + + DS ++ +M+ + + + + L + +
Sbjct: 315 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 374
Query: 427 TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469
PATP R I A HT + L + G VG+
Sbjct: 375 MARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 196/403 (48%), Gaps = 30/403 (7%)
Query: 72 SSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI----DS 127
S D + V+E+ + ++ + + LG+YNY+G P VI ++
Sbjct: 41 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 91
Query: 128 LKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSL 187
L+K+ T SR+ GT H E+E+ + F G AIVF GY+ N I+ L GKG
Sbjct: 92 LEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 151
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE 247
+I D+ +H SI +G + A I F+HN+ L++ L + P K +VV+E
Sbjct: 152 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGR-------LPKEPAK--LVVLE 202
Query: 248 GIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMG 307
G+YSM G++ L E++ + K++ A +DEAHS+G G GRGV E G++ +D ++G
Sbjct: 203 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 261
Query: 308 TFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRG 367
TFS S G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 262 TFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 315
Query: 368 AQKLARIRENSNFFRSKLQKMGFEVLGDN-DSPVMPIMVYNPAKVSSFSRECLKQNVAIV 426
+K R+ N+ L+ MGF + + DS ++ +M+ + + + + L + +
Sbjct: 316 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 375
Query: 427 TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469
PATP R I A HT + L + G VG+
Sbjct: 376 MARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 418
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 194/397 (48%), Gaps = 29/397 (7%)
Query: 81 VVERYSNDNNKTLKRTN---NVSRCLNLGSYNYLGFAAADEYCTPRVI----DSLKKYSH 133
V + Y+ +K L T N + + LG+YNY+G P VI +L ++
Sbjct: 22 VRDPYAIVMDKVLSPTEAMINGRKTILLGTYNYMGMT-----FDPDVIAAGKQALDEFGS 76
Query: 134 STCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSL 193
T SRV GT H E+ + F G AIVF GY N ++ L GKG II D+
Sbjct: 77 GTTGSRVLNGTYQGHKACEDALKEFYGTEHAIVFSTGYQANLGMISTLAGKGDYIILDAD 136
Query: 194 NHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSME 253
+H SI +G A I F+HN+ L++ L AE +VV+EG+YSM
Sbjct: 137 SHASIYDGCWLGDAEIVRFRHNSVEDLDKRLGRLPAEAGK---------LVVLEGVYSMM 187
Query: 254 GELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSF 313
G++ L E++ + K++ A +DEAH +G G+ GRGV E GV+ +DVD ++GTFS S
Sbjct: 188 GDIAPLQEMVAVSKKHGAMILVDEAHGMGFFGEHGRGVFEEAGVE-ADVDFVVGTFSXSV 246
Query: 314 GSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLAR 373
G+ GG+ + + L+ C +++ S+ P ++I+ ++ K A
Sbjct: 247 GTVGGFCVSNHPKFEVLRLVCRPYVFTASLPPSVVATAATSIRKLM------HAGDKRAH 300
Query: 374 IRENSNFFRSKLQKMGFEVLGDN-DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPA 432
+ +NS L+ MG+++ + S ++ +++ + A+ + + L+ + + T PA
Sbjct: 301 LWKNSRRLHQGLRDMGYKLGTETAQSAIIAVILTDMAQAVALWQGLLEAGLYVNTARPPA 360
Query: 433 TPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469
TP + R + A H+ E + + L + G G+
Sbjct: 361 TPAGMFLLRCSLCAEHSDEQVEQILGMFESAGRATGV 397
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 173/342 (50%), Gaps = 23/342 (6%)
Query: 126 DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL--MG 183
++L+ + +R GT A H LE +A K AA+VF Y N + L L +
Sbjct: 71 EALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLF 130
Query: 184 KGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIM 243
G +I SDSLNH S++ G + + R+F+HN +HL RE IA P + +
Sbjct: 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHL----RELIAADDPAAPK-----L 181
Query: 244 VVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVD 303
+ E +YSM+G+ + EI I + + A TY+DE H++G G G GV E G+ +D
Sbjct: 182 IAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL-MHRID 240
Query: 304 IMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDG 363
I GT +K++G +GGYIA S ++ ++ P +++TS+ P A ++I + +G
Sbjct: 241 IFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEG 300
Query: 364 S-CRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQ- 421
R AQ++ ++ + +L+ +G ++ D+ S ++P+++ +P + S L
Sbjct: 301 QKLRDAQQM-----HAKVLKMRLKALGMPII-DHGSHIVPVVIGDPVHTKAVSDMLLSDY 354
Query: 422 NVAIVTVGFPATPLLLARARICISASHTK---EDLIEALEVI 460
V + + FP P R R S H + L+ A++++
Sbjct: 355 GVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 396
>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or
7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed
With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or
Kapa). The Enzyme Of Biotin Biosynthetic Pathway.
pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form Of
8-Amino-7-Oxonanoate Synthase
Length = 384
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 183/362 (50%), Gaps = 27/362 (7%)
Query: 103 LNLGSYNYLGFAAADEYCTPRVIDSLKK----YSHSTCSSRVDGGTLALHNELEECVARF 158
LN S +YLG + P++I + ++ + + S G +H LEE +A +
Sbjct: 42 LNFSSNDYLGLSH-----HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEW 96
Query: 159 VGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPS 218
+G A++F G+ N +++ +M K I +D L+H S++ A S + +R F HN +
Sbjct: 97 LGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVT 156
Query: 219 HLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEA 278
HL +L Q MVV EG++SM+G+ L EI + +++ + +D+A
Sbjct: 157 HLARLLASPCPGQQ----------MVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDA 206
Query: 279 HSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHL 338
H G +G+ GRG C L V ++++ TF K FG G + S + YL +
Sbjct: 207 HGTGVIGEQGRGSCWLQKVKP---ELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLI 263
Query: 339 YATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDS 398
Y+TS+ P A+ + +++ V+ ++G R +KLA + FR+ +Q + F L D+ S
Sbjct: 264 YSTSMPPAQAQALRASLAVIRSDEGDAR-REKLAALITR---FRAGVQDLPF-TLADSCS 318
Query: 399 PVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALE 458
+ P++V + ++ + + +Q + + P P +AR R+ ++A+H +D+ LE
Sbjct: 319 AIQPLIVGDNSRALQLAEKLRQQGCWVTGIRPPTVPAGIARLRLTLTAAHEMQDIDRLLE 378
Query: 459 VI 460
V+
Sbjct: 379 VL 380
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 172/342 (50%), Gaps = 23/342 (6%)
Query: 126 DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL--MG 183
++L+ + +R GT A H LE +A K AA+VF Y N + L L +
Sbjct: 71 EALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLF 130
Query: 184 KGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIM 243
G +I SDSLNH S++ G + + R+F+HN +HL RE IA P + +
Sbjct: 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHL----RELIAADDPAAPK-----L 181
Query: 244 VVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVD 303
+ E +YSM+G+ + EI I + + A TY+DE H++G G G GV E G+ +D
Sbjct: 182 IAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL-MHRID 240
Query: 304 IMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDG 363
I GT + ++G +GGYIA S ++ ++ P +++TS+ P A ++I + +G
Sbjct: 241 IFNGTLAXAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEG 300
Query: 364 S-CRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQ- 421
R AQ++ ++ + +L+ +G ++ D+ S ++P+++ +P + S L
Sbjct: 301 QKLRDAQQM-----HAKVLKMRLKALGMPII-DHGSHIVPVVIGDPVHTKAVSDMLLSDY 354
Query: 422 NVAIVTVGFPATPLLLARARICISASHTK---EDLIEALEVI 460
V + + FP P R R S H + L+ A++++
Sbjct: 355 GVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 396
>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase
pdb|2G6W|A Chain A, Suicide Inhibition Of A-Oxamine Synthase: Structures Of
The Covalent Adducts Of 8-Amino-7-Oxonanoate Synthase
With Trifluoroalanine
Length = 384
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 182/362 (50%), Gaps = 27/362 (7%)
Query: 103 LNLGSYNYLGFAAADEYCTPRVIDSLKK----YSHSTCSSRVDGGTLALHNELEECVARF 158
LN S +YLG + P++I + ++ + + S G +H LEE +A +
Sbjct: 42 LNFSSNDYLGLSH-----HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEW 96
Query: 159 VGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPS 218
+G A++F G+ N +++ +M K I +D L+H S++ A S + +R F HN +
Sbjct: 97 LGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVT 156
Query: 219 HLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEA 278
HL +L Q MVV EG++SM+G+ L EI + +++ + +D+A
Sbjct: 157 HLARLLASPCPGQQ----------MVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDA 206
Query: 279 HSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHL 338
H G +G+ GRG C L V ++++ TF K FG G + S + YL +
Sbjct: 207 HGTGVIGEQGRGSCWLQKVKP---ELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLI 263
Query: 339 YATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDS 398
Y+TS+ P A+ + +++ V+ ++G R +KLA + FR+ +Q + F L D+ S
Sbjct: 264 YSTSMPPAQAQALRASLAVIRSDEGDAR-REKLAALITR---FRAGVQDLPF-TLADSCS 318
Query: 399 PVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALE 458
+ P++V + ++ + + +Q + + P P AR R+ ++A+H +D+ LE
Sbjct: 319 AIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLE 378
Query: 459 VI 460
V+
Sbjct: 379 VL 380
>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase
(biof) From Francisella Tularensis
Length = 399
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 159/360 (44%), Gaps = 24/360 (6%)
Query: 103 LNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP 162
++ + +YL ++A +++ KY + S + G + E A+F+ P
Sbjct: 54 IDFTTSDYLNLSSAHN-LKHAIVNGFDKYGFGSKGSNIVCGYTDETQQFEHEFAKFINYP 112
Query: 163 AAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEE 222
AI F G++ N +I L K I +D H SI++G + S A +R ++H S L++
Sbjct: 113 RAIFFSSGFMANLAIYSTLFSKHDSIFADKYIHASIIDGIKLSQAKLRRYKHQQLSQLQD 172
Query: 223 VLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIG 282
I +G K + EG++S G + +L ++ I +DEAHS G
Sbjct: 173 -----IYDG---------KSFITTEGVFSTSGSITQLDKLAKITPE---KLIVDEAHSFG 215
Query: 283 AVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATS 342
+GK GRG + + I + K+FG G + ++ + +YL ++Y T+
Sbjct: 216 VLGKNGRGAINSFRISYKNCLICVFPLGKAFGGVGAVVCTTEAIAEYLIQFARNYIYTTA 275
Query: 343 ISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMP 402
+ P I+ A + + + + AR+++N FF E++ + SP+
Sbjct: 276 LPP----MILKAALIQLKNLENVNDNR--ARLQQNITFFNELCDAKDLELVSKDLSPIRS 329
Query: 403 IMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISR 462
I + N + + + + +P P A R + +++T + + +ALE+IS+
Sbjct: 330 IQLNNANLAIRLKDKLFENKIIVSXFRYPTVPKDQAILRFSLHSNNTFDQIQQALEIISK 389
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 128/287 (44%), Gaps = 21/287 (7%)
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIR 210
+E+ +A+F G ++ G+ N +L + + + D H S+ GAR + A
Sbjct: 89 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAH 148
Query: 211 VFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK 270
F HN HL +++ G ++VV+ IYS G + L E++ I K +
Sbjct: 149 PFMHNNCDHLRMLIQRH-GPG-----------IIVVDSIYSTLGTIAPLAELVNISKEFG 196
Query: 271 AYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYL 330
+DE+HS+G G G G+ LG+ T +V M + +K+F G I + E+ + +
Sbjct: 197 CALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCV 255
Query: 331 KYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLAR-----IRENSNFFRSKL 385
+ ++++++ P A + + ++++ D + ++AR + + RS+
Sbjct: 256 PFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSES 315
Query: 386 QKMGFEVLGD--NDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGF 430
Q +G E GD N V + N S F R +N I+ +
Sbjct: 316 QIIGLET-GDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSL 361
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 128/287 (44%), Gaps = 21/287 (7%)
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIR 210
+E+ +A+F G ++ G+ N +L + + + D H S+ GAR + A
Sbjct: 89 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAH 148
Query: 211 VFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK 270
F HN HL +++ G ++VV+ IYS G + L E++ I K +
Sbjct: 149 PFMHNNCDHLRMLIQRH-GPG-----------IIVVDSIYSTLGTIAPLAELVNISKEFG 196
Query: 271 AYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYL 330
+DE+HS+G G G G+ LG+ T +V M + +K+F G I + E+ + +
Sbjct: 197 CALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCV 255
Query: 331 KYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLAR-----IRENSNFFRSKL 385
+ ++++++ P A + + ++++ D + ++AR + + RS+
Sbjct: 256 PFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSES 315
Query: 386 QKMGFEVLGD--NDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGF 430
Q +G E GD N V + N S F R +N I+ +
Sbjct: 316 QIIGLET-GDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSL 361
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 128/287 (44%), Gaps = 21/287 (7%)
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIR 210
+E+ +A+F G ++ G+ N +L + + + D H S+ GAR + A
Sbjct: 109 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAH 168
Query: 211 VFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK 270
F HN HL +++ G ++VV+ IYS G + L E++ I K +
Sbjct: 169 PFMHNNCDHLRMLIQRH-GPG-----------IIVVDSIYSTLGTIAPLAELVNISKEFG 216
Query: 271 AYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYL 330
+DE+HS+G G G G+ LG+ T +V M + +K+F G I + E+ + +
Sbjct: 217 CALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCV 275
Query: 331 KYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLAR-----IRENSNFFRSKL 385
+ ++++++ P A + + ++++ D + ++AR + + RS+
Sbjct: 276 PFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSES 335
Query: 386 QKMGFEVLGD--NDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGF 430
Q +G E GD N V + N S F R +N I+ +
Sbjct: 336 QIIGLET-GDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSL 381
>pdb|3DR7|A Chain A, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
pdb|3DR7|B Chain B, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
pdb|3DR7|C Chain C, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
pdb|3DR7|D Chain D, Gdp-perosamine Synthase From Caulobacter Crescentus With
Bound Gdp-3-deoxyperosamine
Length = 391
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 150 ELEECVARFVGKPAAIVFGMGYVT-NSSILPVLMGKGSLIISDSLNHNSIVNGARGSGAT 208
E E+ A + G AI G + +++ + +G G +I SL + + N GAT
Sbjct: 60 EFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGAT 119
Query: 209 IRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKR 268
V N P + A PRT K IM V + G++C + I+ + +R
Sbjct: 120 -PVLVDNDPRTFNLDAAKLEALITPRT----KAIMPV-----HLYGQICDMDPILEVARR 169
Query: 269 YKAYTYLDEAHSIGA 283
+ D A ++GA
Sbjct: 170 HNLLVIEDAAEAVGA 184
>pdb|3DR4|A Chain A, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
pdb|3DR4|B Chain B, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
pdb|3DR4|C Chain C, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
pdb|3DR4|D Chain D, Gdp-Perosamine Synthase K186a Mutant From Caulobacter
Crescentus With Bound Sugar Ligand
Length = 391
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 150 ELEECVARFVGKPAAIVFGMGYVT-NSSILPVLMGKGSLIISDSLNHNSIVNGARGSGAT 208
E E+ A + G AI G + +++ + +G G +I SL + + N GAT
Sbjct: 60 EFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGAT 119
Query: 209 IRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKR 268
V N P + A PRT K IM V + G++C + I+ + +R
Sbjct: 120 -PVLVDNDPRTFNLDAAKLEALITPRT----KAIMPV-----HLYGQICDMDPILEVARR 169
Query: 269 YKAYTYLDEAHSIGA 283
+ D A ++GA
Sbjct: 170 HNLLVIEDAAEAVGA 184
>pdb|3BN1|A Chain A, Crystal Structure Of Gdp-Perosamine Synthase
pdb|3BN1|B Chain B, Crystal Structure Of Gdp-Perosamine Synthase
pdb|3BN1|C Chain C, Crystal Structure Of Gdp-Perosamine Synthase
pdb|3BN1|D Chain D, Crystal Structure Of Gdp-Perosamine Synthase
Length = 373
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 150 ELEECVARFVGKPAAIVFGMGYVT-NSSILPVLMGKGSLIISDSLNHNSIVNGARGSGAT 208
E E+ A + G AI G + +++ + +G G +I SL + + N GAT
Sbjct: 42 EFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGAT 101
Query: 209 IRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKR 268
V N P + A PRT K IM V + G++C + I+ + +R
Sbjct: 102 -PVLVDNDPRTFNLDAAKLEALITPRT----KAIMPV-----HLYGQICDMDPILEVARR 151
Query: 269 YKAYTYLDEAHSIGA 283
+ D A ++GA
Sbjct: 152 HNLLVIEDAAEAVGA 166
>pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
pdb|3QGU|B Chain B, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
Length = 449
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 375 RENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVS-SFSRECLKQNVAIVTVGFPAT 433
+EN+ ++ +MGF V G +D+P I V P K S E L++ + T G
Sbjct: 351 KENAQILKTTFTEMGFSVYGGDDAPY--IWVGFPGKPSWDVFAEILERCNIVTTPGSGYG 408
Query: 434 PLLLARARICISASHTKEDLIEAL 457
P + SA ++E+++EA+
Sbjct: 409 P--AGEGFVRASAFGSRENILEAV 430
>pdb|2CHU|A Chain A, Ceue In Complex With Mecam
pdb|2CHU|B Chain B, Ceue In Complex With Mecam
Length = 296
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 246 VEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGR-GVC-ELLGVDTSDVD 303
+E I ++ E+ K I+ K KA L ++ I A G R G+ ++LG++ D +
Sbjct: 150 LEKISDIKNEIEKAKSIVDEDK--KALIILTNSNKISAFGPQSRFGIIHDVLGINAVDEN 207
Query: 304 IMMGTFSKSFGS 315
I +GT KS S
Sbjct: 208 IKVGTHGKSINS 219
>pdb|3SU8|X Chain X, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 611
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 147 LHNELEECVARFV----GKPAAIVF-GMGYVTNSSILPVLMGKGSLIISDS--------- 192
L N + C+ FV G+P ++F G+ + + + + GK ++D+
Sbjct: 163 LTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVEY 222
Query: 193 --LNHNSIVNGARGSGAT----IRVFQHNTPSHLEEVLREQIAEGQPRTRRP 238
L N+++ G+G ++V +T S +E + +Q+ +G P T+RP
Sbjct: 223 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRP 274
>pdb|3HM6|X Chain X, Crystal Structure Of The Cytoplasmic Domain Of Human
Plexin B1
Length = 644
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 147 LHNELEECVARFV----GKPAAIVF-GMGYVTNSSILPVLMGKGSLIISDS--------- 192
L N + C+ FV G+P ++F G+ + + + + GK ++D+
Sbjct: 196 LTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVEY 255
Query: 193 --LNHNSIVNGARGSGAT----IRVFQHNTPSHLEEVLREQIAEGQPRTRRP 238
L N+++ G+G ++V +T S +E + +Q+ +G P T+RP
Sbjct: 256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRP 307
>pdb|3SUA|D Chain D, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|E Chain E, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|F Chain F, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
Length = 633
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 147 LHNELEECVARFV----GKPAAIVF-GMGYVTNSSILPVLMGKGSLIISDS--------- 192
L N + C+ FV G+P ++F G+ + + + + GK ++D+
Sbjct: 185 LTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVEY 244
Query: 193 --LNHNSIVNGARGSGAT----IRVFQHNTPSHLEEVLREQIAEGQPRTRRP 238
L N+++ G+G ++V +T S +E + +Q+ +G P T+RP
Sbjct: 245 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRP 296
>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
Length = 432
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 34/216 (15%)
Query: 258 KLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG 317
+L +++ K+ + D A+++ R + E+ G + +V + +FSK G G
Sbjct: 219 QLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAE--EVAMETASFSKYAGFTG 276
Query: 318 ---GYIAGSKELI---------QYLKYNCPAHLYATSISPPAA-----EQIISAIQVVIG 360
G+ K+L+ + + C A++IS A + + A+ VIG
Sbjct: 277 VRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIG 336
Query: 361 EDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLK 420
+EN+N +G++V G ++P + + N + F+ E L+
Sbjct: 337 ------------FYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVFA-EILE 383
Query: 421 QNVAIVTVGFPATPLLLARARICISASHTKEDLIEA 456
+ + T G P R +SA +E+++EA
Sbjct: 384 KTHVVTTPGSGFGPGGEGFVR--VSAFGHRENILEA 417
>pdb|3M5D|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302r Mutant Complexed With Palao
Length = 359
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 384 KLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSREC----LKQNVAIVTVGFPATPLLLAR 439
K K+G E+ G + + ++ +NP+ + S E L + ++ G A P+
Sbjct: 48 KRNKLGSELKGKS----IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNL 103
Query: 440 ARICISASHTKEDLIEALEVISRIGDLVGIKYFP 473
+ T+E + E V+ R DL+G++ FP
Sbjct: 104 G--TVMDGDTEEHIAEVARVLGRYVDLIGVRAFP 135
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 56/294 (19%), Positives = 118/294 (40%), Gaps = 41/294 (13%)
Query: 112 GFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGY 171
G++ D +CT +D +K T +H+ + + +F+G A V
Sbjct: 35 GYSVCD-FCTTGRLDEIK--------------TPPIHDFIHNQLPKFLGCDVARVTNGAR 79
Query: 172 VTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIR-VFQHNTPSHLEEVLREQIAE 230
+++ L K + ++ D H S A +G I V + + P + + E A+
Sbjct: 80 EAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYA--ITPENFAQ 137
Query: 231 GQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRG 290
T++ + ++ ++ G L + +I +C Y ++ A++IG +
Sbjct: 138 TIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMP----- 192
Query: 291 VCELLGVDTSDVDIMMGTFSKSFGSYGGY-IAGSKE------LIQYLKY-NCPAHLYATS 342
+ + D ++G+ KS + G + G KE L + KY N L +
Sbjct: 193 ----VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCT 248
Query: 343 ISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDN 396
++++ V + R +++ + R F ++++K+G + LGDN
Sbjct: 249 ARGATIITLMASFPHV--RERIKRWDEEVEKARR----FAAEMEKLGIKQLGDN 296
>pdb|3M5C|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302e Mutant Complexed With Palao
Length = 359
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 384 KLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSREC----LKQNVAIVTVGFPATPLLLAR 439
K K+G E+ G + + ++ +NP+ + S E L + ++ G A P+
Sbjct: 48 KRNKLGSELKGKS----IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNL 103
Query: 440 ARICISASHTKEDLIEALEVISRIGDLVGIKYFP 473
+ T+E + E V+ R DL+G++ FP
Sbjct: 104 G--TVMDGDTEEHIAEVARVLGRYVDLIGVRAFP 135
>pdb|3KZC|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
pdb|3KZK|A Chain A, Crystal Structure Of Acetylornithine Transcarbamylase
Complexed With Acetylcitrulline
pdb|3KZM|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate
pdb|3KZN|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With N-Acetyl-L-Ornirthine
pdb|3KZO|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate And
N-Acetyl-L-Norvaline
pdb|3M4J|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Palao
Length = 359
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 384 KLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSREC----LKQNVAIVTVGFPATPLLLAR 439
K K+G E+ G + + ++ +NP+ + S E L + ++ G A P+
Sbjct: 48 KRNKLGSELKGKS----IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNL 103
Query: 440 ARICISASHTKEDLIEALEVISRIGDLVGIKYFP 473
+ T+E + E V+ R DL+G++ FP
Sbjct: 104 G--TVMDGDTEEHIAEVARVLGRYVDLIGVRAFP 135
>pdb|3M4N|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302a Mutant Complexed With Palao
Length = 359
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 384 KLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSREC----LKQNVAIVTVGFPATPLLLAR 439
K K+G E+ G + + ++ +NP+ + S E L + ++ G A P+
Sbjct: 48 KRNKLGSELKGKS----IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNL 103
Query: 440 ARICISASHTKEDLIEALEVISRIGDLVGIKYFP 473
+ T+E + E V+ R DL+G++ FP
Sbjct: 104 G--TVMDGDTEEHIAEVARVLGRYVDLIGVRAFP 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,882,126
Number of Sequences: 62578
Number of extensions: 643162
Number of successful extensions: 1536
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1461
Number of HSP's gapped (non-prelim): 39
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)