Query 040324
Match_columns 488
No_of_seqs 348 out of 3246
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w8t_A SPT, serine palmitoyltr 100.0 4E-47 1.4E-51 388.2 38.1 372 66-470 45-418 (427)
2 3kki_A CAI-1 autoinducer synth 100.0 2.4E-45 8.2E-50 372.8 33.7 363 69-468 43-405 (409)
3 4atq_A 4-aminobutyrate transam 100.0 1.4E-45 4.9E-50 375.6 29.3 358 65-467 44-455 (456)
4 3tqx_A 2-amino-3-ketobutyrate 100.0 1.2E-43 4.2E-48 358.6 41.6 373 66-469 25-398 (399)
5 4e3q_A Pyruvate transaminase; 100.0 4.1E-44 1.4E-48 366.2 33.4 352 66-468 48-469 (473)
6 4ao9_A Beta-phenylalanine amin 100.0 2.5E-45 8.6E-50 372.1 23.9 343 65-468 67-447 (454)
7 1fc4_A 2-amino-3-ketobutyrate 100.0 2.7E-42 9.2E-47 349.3 39.7 373 66-469 26-399 (401)
8 3a2b_A Serine palmitoyltransfe 100.0 3.7E-41 1.3E-45 340.7 38.9 372 65-470 24-395 (398)
9 3hmu_A Aminotransferase, class 100.0 3.1E-42 1.1E-46 355.6 31.3 352 66-468 36-453 (472)
10 1bs0_A Protein (8-amino-7-oxon 100.0 8.5E-41 2.9E-45 336.3 38.8 363 66-463 21-383 (384)
11 2oat_A Ornithine aminotransfer 100.0 7.4E-42 2.5E-46 350.1 27.9 346 66-466 57-438 (439)
12 3i5t_A Aminotransferase; pyrid 100.0 4.7E-41 1.6E-45 347.3 33.8 352 66-469 35-456 (476)
13 1z7d_A Ornithine aminotransfer 100.0 8.2E-42 2.8E-46 349.2 27.8 349 67-470 47-432 (433)
14 2bwn_A 5-aminolevulinate synth 100.0 3.2E-40 1.1E-44 334.1 35.2 354 98-467 44-400 (401)
15 3gju_A Putative aminotransfera 100.0 3E-40 1E-44 340.5 33.4 354 66-468 32-457 (460)
16 3tfu_A Adenosylmethionine-8-am 100.0 1E-40 3.4E-45 343.1 28.6 347 68-468 55-454 (457)
17 3oks_A 4-aminobutyrate transam 100.0 3.6E-40 1.2E-44 338.9 30.1 354 65-466 41-450 (451)
18 4ffc_A 4-aminobutyrate aminotr 100.0 3.5E-40 1.2E-44 339.1 29.4 355 65-468 44-450 (453)
19 4a6r_A Omega transaminase; tra 100.0 9.8E-40 3.4E-44 336.5 29.8 352 66-468 31-450 (459)
20 3nx3_A Acoat, acetylornithine 100.0 2.9E-39 9.9E-44 326.5 29.5 345 66-466 17-394 (395)
21 3n5m_A Adenosylmethionine-8-am 100.0 4.9E-39 1.7E-43 330.7 30.7 353 66-466 30-451 (452)
22 3dod_A Adenosylmethionine-8-am 100.0 3.3E-39 1.1E-43 331.6 28.8 348 67-467 26-443 (448)
23 3i4j_A Aminotransferase, class 100.0 1.7E-38 5.7E-43 324.7 31.3 357 66-467 10-428 (430)
24 3l44_A Glutamate-1-semialdehyd 100.0 8E-39 2.7E-43 327.4 26.8 345 66-468 36-431 (434)
25 3dxv_A Alpha-amino-epsilon-cap 100.0 1E-38 3.6E-43 327.0 27.3 352 66-468 24-426 (439)
26 2pb2_A Acetylornithine/succiny 100.0 1.7E-38 6E-43 323.4 27.8 346 66-467 38-418 (420)
27 3k28_A Glutamate-1-semialdehyd 100.0 1.2E-38 3.9E-43 325.7 26.4 343 66-467 34-427 (429)
28 4e77_A Glutamate-1-semialdehyd 100.0 2.9E-38 1E-42 322.7 27.6 343 66-466 34-428 (429)
29 1ohv_A 4-aminobutyrate aminotr 100.0 6.4E-39 2.2E-43 331.0 21.5 355 66-467 44-471 (472)
30 4a0g_A Adenosylmethionine-8-am 100.0 8.8E-40 3E-44 355.2 14.8 360 68-468 357-829 (831)
31 2yky_A Beta-transaminase; tran 100.0 1.4E-41 4.6E-46 347.2 0.0 341 66-467 81-460 (465)
32 3ruy_A Ornithine aminotransfer 100.0 1.2E-37 4E-42 314.3 26.1 343 64-464 15-391 (392)
33 2epj_A Glutamate-1-semialdehyd 100.0 1.5E-37 5.2E-42 317.9 27.3 344 66-467 37-431 (434)
34 3fq8_A Glutamate-1-semialdehyd 100.0 1.7E-37 5.8E-42 316.9 26.6 343 66-466 33-426 (427)
35 2cjg_A L-lysine-epsilon aminot 100.0 4.8E-37 1.6E-41 315.4 26.9 347 65-467 31-448 (449)
36 1zod_A DGD, 2,2-dialkylglycine 100.0 6.1E-36 2.1E-40 305.9 32.0 353 67-467 25-432 (433)
37 4adb_A Succinylornithine trans 100.0 2.4E-36 8.2E-41 306.0 27.7 350 61-468 15-401 (406)
38 3a8u_X Omega-amino acid--pyruv 100.0 5E-36 1.7E-40 308.0 30.2 351 67-467 32-447 (449)
39 2e7u_A Glutamate-1-semialdehyd 100.0 1.6E-36 5.5E-41 309.4 25.7 339 67-463 34-423 (424)
40 1sff_A 4-aminobutyrate aminotr 100.0 1.2E-35 4.1E-40 302.9 28.7 351 67-467 23-424 (426)
41 2eo5_A 419AA long hypothetical 100.0 2.7E-35 9.1E-40 299.9 29.9 344 67-467 24-418 (419)
42 1s0a_A Adenosylmethionine-8-am 100.0 5.9E-35 2E-39 298.2 30.5 345 71-467 29-424 (429)
43 2ord_A Acoat, acetylornithine 100.0 6.2E-36 2.1E-40 302.3 22.5 342 66-466 21-396 (397)
44 3nra_A Aspartate aminotransfer 100.0 8E-35 2.8E-39 294.8 28.8 339 101-468 40-406 (407)
45 2cy8_A D-phgat, D-phenylglycin 100.0 5.3E-35 1.8E-39 300.7 25.5 342 66-468 38-436 (453)
46 3l8a_A METC, putative aminotra 100.0 5.4E-34 1.9E-38 290.4 30.4 355 68-465 42-420 (421)
47 1vef_A Acetylornithine/acetyl- 100.0 1.6E-34 5.6E-39 291.6 25.7 341 66-464 26-394 (395)
48 3fdb_A Beta C-S lyase, putativ 100.0 1.9E-34 6.6E-39 289.0 22.8 344 73-467 11-376 (377)
49 3dzz_A Putative pyridoxal 5'-p 100.0 3.5E-33 1.2E-37 281.1 29.7 356 67-467 9-389 (391)
50 2eh6_A Acoat, acetylornithine 100.0 1.7E-33 5.9E-38 281.9 23.9 336 67-463 10-374 (375)
51 2zc0_A Alanine glyoxylate tran 100.0 1.7E-32 5.7E-37 277.9 31.0 349 99-467 33-404 (407)
52 3kax_A Aminotransferase, class 100.0 1.6E-32 5.4E-37 275.5 30.1 348 72-464 10-382 (383)
53 1c7n_A Cystalysin; transferase 100.0 2.4E-32 8.4E-37 276.0 29.7 354 67-469 5-395 (399)
54 2z61_A Probable aspartate amin 100.0 2.1E-32 7.2E-37 273.7 27.5 329 99-465 28-369 (370)
55 3aow_A Putative uncharacterize 100.0 5.5E-32 1.9E-36 277.6 30.8 350 99-467 75-445 (448)
56 4dq6_A Putative pyridoxal phos 100.0 3E-32 1E-36 274.3 27.3 351 72-464 14-390 (391)
57 2zyj_A Alpha-aminodipate amino 100.0 4.7E-32 1.6E-36 273.8 28.6 344 99-467 31-393 (397)
58 1vp4_A Aminotransferase, putat 100.0 6.8E-32 2.3E-36 275.2 28.6 353 99-468 42-419 (425)
59 1d2f_A MALY protein; aminotran 100.0 7.7E-31 2.6E-35 264.2 35.7 345 73-467 11-389 (390)
60 2dou_A Probable N-succinyldiam 100.0 1.7E-31 5.9E-36 267.6 30.2 330 99-464 24-375 (376)
61 1gd9_A Aspartate aminotransfer 100.0 5.6E-31 1.9E-35 265.1 33.2 335 100-468 26-387 (389)
62 3ly1_A Putative histidinol-pho 100.0 5.1E-31 1.7E-35 261.8 32.3 323 99-466 15-351 (354)
63 1j32_A Aspartate aminotransfer 100.0 2.5E-31 8.4E-36 267.6 30.1 333 99-467 29-387 (388)
64 2x5d_A Probable aminotransfera 100.0 2.2E-31 7.6E-36 270.2 28.7 338 99-469 36-400 (412)
65 1v2d_A Glutamine aminotransfer 100.0 4.4E-31 1.5E-35 265.1 29.6 330 100-467 25-371 (381)
66 3piu_A 1-aminocyclopropane-1-c 100.0 7.6E-31 2.6E-35 268.2 30.9 340 111-468 43-433 (435)
67 1yiz_A Kynurenine aminotransfe 100.0 1.2E-30 4.2E-35 266.2 32.1 341 100-465 37-427 (429)
68 1o4s_A Aspartate aminotransfer 100.0 3.8E-31 1.3E-35 266.5 27.7 324 99-465 40-387 (389)
69 3dyd_A Tyrosine aminotransfera 100.0 1.5E-30 5.1E-35 265.4 30.8 337 99-468 53-425 (427)
70 3h14_A Aminotransferase, class 100.0 1.3E-30 4.5E-35 262.6 30.0 330 99-468 30-383 (391)
71 2gb3_A Aspartate aminotransfer 100.0 7.1E-31 2.4E-35 266.3 27.3 332 99-468 42-403 (409)
72 2o1b_A Aminotransferase, class 100.0 7.6E-31 2.6E-35 265.7 27.1 333 99-466 46-402 (404)
73 1t3i_A Probable cysteine desul 100.0 2.5E-30 8.4E-35 262.7 30.7 340 99-468 26-414 (420)
74 1kmj_A Selenocysteine lyase; p 100.0 3.6E-30 1.2E-34 260.2 31.5 339 99-467 21-405 (406)
75 1u08_A Hypothetical aminotrans 100.0 2.8E-30 9.7E-35 259.7 30.5 330 100-462 30-385 (386)
76 1xi9_A Putative transaminase; 100.0 8.2E-31 2.8E-35 265.5 25.9 332 99-467 37-403 (406)
77 3qgu_A LL-diaminopimelate amin 100.0 4.4E-31 1.5E-35 271.1 24.0 342 99-467 68-440 (449)
78 3ffh_A Histidinol-phosphate am 100.0 1.1E-29 3.9E-34 253.0 32.6 317 99-463 31-362 (363)
79 3ezs_A Aminotransferase ASPB; 100.0 2.5E-30 8.4E-35 259.1 27.7 325 99-466 23-374 (376)
80 3fvs_A Kynurenine--oxoglutarat 100.0 1.9E-30 6.6E-35 264.0 27.1 340 99-466 27-421 (422)
81 2dr1_A PH1308 protein, 386AA l 100.0 1.3E-29 4.4E-34 254.4 32.6 297 145-469 52-381 (386)
82 3g0t_A Putative aminotransfera 100.0 2.4E-30 8.3E-35 264.5 27.3 336 99-466 43-436 (437)
83 3jtx_A Aminotransferase; NP_28 100.0 9.2E-30 3.1E-34 256.7 31.1 328 99-464 29-395 (396)
84 2o0r_A RV0858C (N-succinyldiam 100.0 4.5E-30 1.5E-34 260.5 28.6 334 101-467 26-396 (411)
85 3op7_A Aminotransferase class 100.0 4.8E-30 1.6E-34 256.9 28.2 327 100-468 27-372 (375)
86 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 2.9E-31 9.8E-36 265.2 18.4 324 114-467 19-370 (371)
87 3nnk_A Ureidoglycine-glyoxylat 100.0 1.9E-28 6.5E-33 248.1 36.2 299 145-471 45-394 (411)
88 3euc_A Histidinol-phosphate am 100.0 5.5E-29 1.9E-33 248.5 31.7 320 99-465 29-366 (367)
89 3hdo_A Histidinol-phosphate am 100.0 1.6E-29 5.6E-34 251.7 27.8 326 99-467 25-355 (360)
90 3e2y_A Kynurenine-oxoglutarate 100.0 1.3E-29 4.4E-34 256.9 27.4 336 99-462 22-408 (410)
91 3ei9_A LL-diaminopimelate amin 100.0 3.5E-30 1.2E-34 263.1 23.2 341 99-466 55-427 (432)
92 3zrp_A Serine-pyruvate aminotr 100.0 3.1E-28 1.1E-32 244.1 36.8 295 145-471 34-367 (384)
93 3ftb_A Histidinol-phosphate am 100.0 1.7E-28 6E-33 244.1 34.7 319 99-466 25-360 (361)
94 3get_A Histidinol-phosphate am 100.0 3E-29 1E-33 250.2 29.1 321 99-464 29-364 (365)
95 1b5p_A Protein (aspartate amin 100.0 4.2E-29 1.5E-33 251.1 30.5 328 99-465 30-383 (385)
96 3f9t_A TDC, L-tyrosine decarbo 100.0 2.8E-29 9.5E-34 252.6 28.8 318 116-465 42-396 (397)
97 3isl_A Purine catabolism prote 100.0 1.9E-28 6.5E-33 248.5 34.6 329 113-473 15-396 (416)
98 3ele_A Amino transferase; RER0 100.0 2.3E-29 7.9E-34 254.0 27.6 331 99-468 34-397 (398)
99 1eg5_A Aminotransferase; PLP-d 100.0 6E-29 2.1E-33 249.3 29.7 335 101-468 3-377 (384)
100 1bw0_A TAT, protein (tyrosine 100.0 8.5E-29 2.9E-33 251.4 29.8 336 100-468 33-414 (416)
101 2x5f_A Aspartate_tyrosine_phen 100.0 2E-29 6.7E-34 257.4 24.8 332 100-467 47-429 (430)
102 3cq5_A Histidinol-phosphate am 100.0 9.7E-28 3.3E-32 239.8 36.6 317 103-465 33-366 (369)
103 3b46_A Aminotransferase BNA3; 100.0 2.7E-29 9.3E-34 257.6 25.9 332 99-462 56-442 (447)
104 3kgw_A Alanine-glyoxylate amin 100.0 3.7E-28 1.3E-32 244.3 33.3 296 145-468 55-389 (393)
105 1vjo_A Alanine--glyoxylate ami 100.0 1.5E-28 5.3E-33 247.5 30.5 292 145-464 66-392 (393)
106 1m32_A 2-aminoethylphosphonate 100.0 6.7E-29 2.3E-33 247.1 27.4 294 146-467 37-365 (366)
107 1elu_A L-cysteine/L-cystine C- 100.0 7E-29 2.4E-33 249.4 27.5 319 113-462 25-387 (390)
108 1lc5_A COBD, L-threonine-O-3-p 100.0 2.4E-28 8.2E-33 243.7 30.6 326 98-467 22-360 (364)
109 2vi8_A Serine hydroxymethyltra 100.0 4.9E-29 1.7E-33 252.1 25.9 339 99-468 23-388 (405)
110 2r2n_A Kynurenine/alpha-aminoa 100.0 7.2E-28 2.5E-32 245.4 34.4 319 143-467 79-424 (425)
111 3b1d_A Betac-S lyase; HET: PLP 99.9 1.9E-32 6.6E-37 276.2 0.0 344 73-465 17-391 (392)
112 3lws_A Aromatic amino acid bet 100.0 6.9E-30 2.4E-34 254.0 18.4 332 100-464 3-356 (357)
113 3lvm_A Cysteine desulfurase; s 100.0 6.1E-29 2.1E-33 252.9 25.6 336 98-469 21-401 (423)
114 3cai_A Possible aminotransfera 100.0 2E-28 6.8E-33 247.8 28.6 335 99-462 26-404 (406)
115 2z9v_A Aspartate aminotransfer 100.0 4.2E-28 1.4E-32 244.1 30.6 332 100-471 9-375 (392)
116 1iay_A ACC synthase 2, 1-amino 100.0 1.1E-27 3.8E-32 244.2 33.0 302 148-467 85-427 (428)
117 3t18_A Aminotransferase class 100.0 4.5E-28 1.5E-32 245.9 29.7 337 99-468 36-411 (413)
118 3rq1_A Aminotransferase class 100.0 1.4E-27 4.7E-32 242.7 32.4 344 99-468 37-416 (418)
119 3fkd_A L-threonine-O-3-phospha 100.0 9.7E-28 3.3E-32 237.9 29.3 330 73-467 3-342 (350)
120 4eb5_A Probable cysteine desul 100.0 2.3E-28 7.9E-33 245.0 25.0 331 102-468 3-374 (382)
121 2huf_A Alanine glyoxylate amin 100.0 2.4E-27 8.2E-32 238.7 31.8 298 145-470 51-386 (393)
122 1iug_A Putative aspartate amin 100.0 9.1E-28 3.1E-32 237.9 28.3 310 116-467 12-348 (352)
123 3asa_A LL-diaminopimelate amin 100.0 2.1E-28 7.2E-33 247.3 23.9 341 99-468 32-394 (400)
124 4hvk_A Probable cysteine desul 100.0 8.6E-28 2.9E-32 240.4 27.4 331 102-468 3-374 (382)
125 1qz9_A Kynureninase; kynurenin 100.0 1.5E-27 5E-32 242.2 28.7 327 99-468 28-403 (416)
126 2ch1_A 3-hydroxykynurenine tra 100.0 1.1E-26 3.9E-31 233.9 34.0 297 146-471 51-387 (396)
127 3tcm_A Alanine aminotransferas 100.0 1.5E-26 5E-31 240.4 35.7 340 117-472 108-499 (500)
128 3f0h_A Aminotransferase; RER07 100.0 3E-27 1E-31 236.6 28.5 294 145-466 51-373 (376)
129 1jg8_A L-ALLO-threonine aldola 100.0 1.7E-27 5.7E-32 235.8 26.2 329 100-467 3-346 (347)
130 1svv_A Threonine aldolase; str 100.0 1E-27 3.5E-32 238.1 24.2 332 99-467 12-358 (359)
131 1v72_A Aldolase; PLP-dependent 100.0 7.5E-28 2.6E-32 238.9 22.9 332 99-467 6-353 (356)
132 2dkj_A Serine hydroxymethyltra 100.0 2.1E-27 7.3E-32 240.2 26.1 336 100-466 23-387 (407)
133 3p1t_A Putative histidinol-pho 100.0 3.1E-26 1.1E-30 225.6 33.0 310 99-465 15-335 (337)
134 2yrr_A Aminotransferase, class 100.0 1.9E-27 6.6E-32 235.4 24.1 292 145-466 32-352 (353)
135 3gbx_A Serine hydroxymethyltra 100.0 2.7E-27 9.2E-32 240.4 24.8 326 117-467 43-396 (420)
136 2rfv_A Methionine gamma-lyase; 100.0 2.7E-27 9.4E-32 239.0 24.1 286 144-463 62-396 (398)
137 3ez1_A Aminotransferase MOCR f 100.0 7.1E-27 2.4E-31 237.8 26.5 310 144-469 68-417 (423)
138 3ecd_A Serine hydroxymethyltra 100.0 2.3E-26 7.7E-31 233.9 30.0 337 101-467 33-397 (425)
139 3ppl_A Aspartate aminotransfer 100.0 3.1E-27 1.1E-31 240.9 22.7 308 143-468 75-421 (427)
140 1ax4_A Tryptophanase; tryptoph 100.0 8.9E-26 3E-30 232.7 33.7 339 99-468 42-442 (467)
141 2ez2_A Beta-tyrosinase, tyrosi 100.0 1.1E-25 3.8E-30 231.3 33.8 335 99-468 41-432 (456)
142 2bkw_A Alanine-glyoxylate amin 100.0 6.2E-26 2.1E-30 227.5 30.0 317 117-467 13-384 (385)
143 3vax_A Putative uncharacterize 100.0 1.5E-27 5.2E-32 240.7 18.0 342 90-466 11-399 (400)
144 2oga_A Transaminase; PLP-depen 99.9 8.1E-27 2.8E-31 235.6 22.9 318 100-467 30-396 (399)
145 2fnu_A Aminotransferase; prote 99.9 9.5E-26 3.2E-30 225.4 30.3 314 113-469 8-374 (375)
146 1ajs_A Aspartate aminotransfer 99.9 2E-26 6.8E-31 233.7 25.6 333 99-467 29-411 (412)
147 3n0l_A Serine hydroxymethyltra 99.9 1.1E-25 3.9E-30 228.2 31.1 336 101-467 26-389 (417)
148 1fg7_A Histidinol phosphate am 99.9 3.2E-25 1.1E-29 220.5 33.7 278 148-462 60-353 (356)
149 1mdo_A ARNB aminotransferase; 99.9 9.4E-26 3.2E-30 227.1 29.6 309 117-468 19-387 (393)
150 1b9h_A AHBA synthase, protein 99.9 6.4E-26 2.2E-30 228.0 28.1 310 117-466 16-387 (388)
151 3ke3_A Putative serine-pyruvat 99.9 1.5E-26 5.3E-31 232.0 23.5 295 146-468 35-377 (379)
152 3uwc_A Nucleotide-sugar aminot 99.9 4.1E-26 1.4E-30 228.1 26.5 318 100-467 6-371 (374)
153 1e5e_A MGL, methionine gamma-l 99.9 1.7E-25 5.7E-30 226.2 31.2 309 117-467 33-395 (404)
154 2q7w_A Aspartate aminotransfer 99.9 9.8E-27 3.3E-31 234.5 21.6 328 99-463 25-395 (396)
155 3e9k_A Kynureninase; kynurenin 99.9 2.6E-26 9E-31 236.6 25.3 322 114-467 77-461 (465)
156 3dr4_A Putative perosamine syn 99.9 7.6E-26 2.6E-30 227.8 27.7 307 117-464 35-390 (391)
157 1cs1_A CGS, protein (cystathio 99.9 1.5E-25 5E-30 225.4 29.5 284 144-463 50-383 (386)
158 3if2_A Aminotransferase; YP_26 99.9 2.5E-26 8.5E-31 235.3 24.2 343 100-468 31-441 (444)
159 3d6k_A Putative aminotransfera 99.9 2.6E-26 8.9E-31 233.7 23.8 303 147-467 77-418 (422)
160 3frk_A QDTB; aminotransferase, 99.9 1.8E-26 6E-31 230.9 21.9 304 118-466 17-367 (373)
161 1gc0_A Methionine gamma-lyase; 99.9 1.3E-25 4.5E-30 226.7 28.4 285 144-463 63-397 (398)
162 2c81_A Glutamine-2-deoxy-scyll 99.9 3.7E-25 1.3E-29 224.8 31.4 317 117-469 15-416 (418)
163 1pff_A Methionine gamma-lyase; 99.9 7.3E-26 2.5E-30 222.6 25.2 278 150-463 2-330 (331)
164 3ffr_A Phosphoserine aminotran 99.9 2.1E-25 7.3E-30 221.5 28.6 321 102-464 5-361 (362)
165 2a7v_A Serine hydroxymethyltra 99.9 7E-26 2.4E-30 232.4 25.0 334 102-466 56-440 (490)
166 2ay1_A Aroat, aromatic amino a 99.9 1.9E-26 6.6E-31 232.3 20.2 328 99-463 25-392 (394)
167 3ihj_A Alanine aminotransferas 99.9 5.3E-25 1.8E-29 228.4 31.5 332 117-471 103-497 (498)
168 3g7q_A Valine-pyruvate aminotr 99.9 7.6E-26 2.6E-30 229.6 24.7 336 99-467 30-413 (417)
169 3mad_A Sphingosine-1-phosphate 99.9 1.6E-25 5.6E-30 233.6 27.5 341 103-469 94-471 (514)
170 4eu1_A Mitochondrial aspartate 99.9 9.7E-26 3.3E-30 228.4 24.8 325 99-464 40-408 (409)
171 1uu1_A Histidinol-phosphate am 99.9 3.4E-25 1.1E-29 218.3 27.1 303 100-463 19-334 (335)
172 1yaa_A Aspartate aminotransfer 99.9 9.3E-26 3.2E-30 228.7 22.9 331 99-466 28-410 (412)
173 2oqx_A Tryptophanase; lyase, p 99.9 5.8E-25 2E-29 226.6 28.9 336 99-468 40-443 (467)
174 3nyt_A Aminotransferase WBPE; 99.9 9.7E-26 3.3E-30 225.1 21.9 282 144-462 33-359 (367)
175 3h7f_A Serine hydroxymethyltra 99.9 3E-25 1E-29 227.5 25.7 326 117-467 58-414 (447)
176 1wyu_B Glycine dehydrogenase s 99.9 4.3E-25 1.5E-29 227.9 26.3 323 115-466 77-440 (474)
177 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 1.8E-24 6.2E-29 221.1 29.5 319 99-465 30-434 (437)
178 1c4k_A Protein (ornithine deca 99.9 1.7E-26 5.7E-31 247.2 14.9 398 40-467 75-566 (730)
179 1qgn_A Protein (cystathionine 99.9 2.9E-24 9.9E-29 218.7 30.6 285 145-466 113-444 (445)
180 1o69_A Aminotransferase; struc 99.9 7.3E-24 2.5E-28 213.6 32.8 313 117-466 11-386 (394)
181 2cb1_A O-acetyl homoserine sul 99.9 6.3E-24 2.2E-28 215.3 32.2 281 144-462 54-411 (412)
182 3qhx_A Cystathionine gamma-syn 99.9 1.7E-24 5.9E-29 217.9 27.7 283 144-460 64-391 (392)
183 1rv3_A Serine hydroxymethyltra 99.9 5.6E-25 1.9E-29 227.4 24.8 321 117-466 57-430 (483)
184 3f6t_A Aspartate aminotransfer 99.9 2.4E-25 8.1E-30 232.8 22.0 335 101-471 104-529 (533)
185 4f4e_A Aromatic-amino-acid ami 99.9 6.7E-25 2.3E-29 223.1 24.6 326 100-464 49-419 (420)
186 3mc6_A Sphingosine-1-phosphate 99.9 1E-24 3.4E-29 226.7 26.1 331 115-470 75-440 (497)
187 3acz_A Methionine gamma-lyase; 99.9 9.1E-24 3.1E-28 212.5 31.6 279 145-460 58-386 (389)
188 3fsl_A Aromatic-amino-acid ami 99.9 5.4E-25 1.9E-29 221.8 22.6 326 99-463 25-396 (397)
189 2po3_A 4-dehydrase; external a 99.9 5.4E-24 1.9E-28 216.7 30.1 308 117-467 31-386 (424)
190 3meb_A Aspartate aminotransfer 99.9 1.9E-24 6.5E-29 221.6 26.3 333 101-470 50-447 (448)
191 3hbx_A GAD 1, glutamate decarb 99.9 1.3E-24 4.5E-29 225.6 25.2 328 117-469 69-446 (502)
192 3ndn_A O-succinylhomoserine su 99.9 4.7E-24 1.6E-28 215.9 27.2 283 144-464 79-413 (414)
193 3pj0_A LMO0305 protein; struct 99.9 4.5E-25 1.5E-29 219.3 19.3 294 142-463 44-358 (359)
194 2qma_A Diaminobutyrate-pyruvat 99.9 5.8E-24 2E-28 220.9 27.5 343 103-467 96-496 (497)
195 3b8x_A WBDK, pyridoxamine 5-ph 99.9 4.7E-23 1.6E-27 207.3 32.7 307 111-460 8-389 (390)
196 3vp6_A Glutamate decarboxylase 99.9 6.7E-23 2.3E-27 213.1 34.3 304 149-468 138-506 (511)
197 3cog_A Cystathionine gamma-lya 99.9 9.4E-24 3.2E-28 213.2 26.8 283 145-464 66-399 (403)
198 7aat_A Aspartate aminotransfer 99.9 4.1E-24 1.4E-28 215.8 23.4 325 101-464 29-400 (401)
199 1n8p_A Cystathionine gamma-lya 99.9 3.5E-24 1.2E-28 215.7 22.7 283 145-463 54-391 (393)
200 3ri6_A O-acetylhomoserine sulf 99.9 1.1E-23 3.6E-28 213.9 24.5 284 144-464 80-429 (430)
201 2fq6_A Cystathionine beta-lyas 99.9 3.2E-23 1.1E-27 209.6 26.7 285 144-462 80-413 (415)
202 4e1o_A HDC, histidine decarbox 99.9 1E-22 3.5E-27 210.4 30.2 304 145-467 113-478 (481)
203 3jzl_A Putative cystathionine 99.9 1E-23 3.6E-28 212.3 22.1 245 146-422 59-339 (409)
204 3a9z_A Selenocysteine lyase; P 99.9 1.3E-23 4.6E-28 214.2 22.3 335 99-468 18-429 (432)
205 3nmy_A Xometc, cystathionine g 99.9 5.8E-23 2E-27 206.9 26.2 282 144-464 65-396 (400)
206 2aeu_A Hypothetical protein MJ 99.9 1.6E-23 5.6E-28 209.5 21.8 319 99-468 26-372 (374)
207 1ibj_A CBL, cystathionine beta 99.9 3.8E-23 1.3E-27 211.9 24.6 284 145-467 132-462 (464)
208 2c0r_A PSAT, phosphoserine ami 99.9 1.7E-23 5.7E-28 208.3 20.7 312 114-467 13-361 (362)
209 2dgk_A GAD-beta, GADB, glutama 99.9 1E-22 3.4E-27 209.1 26.0 325 117-468 55-435 (452)
210 2okj_A Glutamate decarboxylase 99.9 8.8E-22 3E-26 204.8 33.5 300 148-467 134-502 (504)
211 3ju7_A Putative PLP-dependent 99.9 4.9E-22 1.7E-26 198.8 30.0 310 117-466 15-374 (377)
212 3k40_A Aromatic-L-amino-acid d 99.9 3.9E-22 1.3E-26 205.6 30.0 305 144-467 107-471 (475)
213 3hvy_A Cystathionine beta-lyas 99.9 1.1E-22 3.9E-27 205.4 25.0 245 147-421 75-355 (427)
214 3i16_A Aluminum resistance pro 99.9 9.3E-23 3.2E-27 206.0 24.0 246 146-421 73-355 (427)
215 1w23_A Phosphoserine aminotran 99.9 8.2E-24 2.8E-28 210.2 15.3 321 101-466 3-359 (360)
216 2ctz_A O-acetyl-L-homoserine s 99.9 2.6E-22 8.8E-27 204.0 26.3 285 145-464 57-420 (421)
217 2jis_A Cysteine sulfinic acid 99.9 1.4E-21 4.8E-26 203.7 32.5 303 145-466 147-514 (515)
218 1js3_A DDC;, DOPA decarboxylas 99.9 6.3E-21 2.2E-25 197.5 31.4 300 149-470 116-477 (486)
219 3ht4_A Aluminum resistance pro 99.9 5.4E-22 1.8E-26 201.4 22.9 244 146-421 65-344 (431)
220 3k7y_A Aspartate aminotransfer 99.9 1.7E-21 5.8E-26 196.3 26.1 284 148-466 74-404 (405)
221 2z67_A O-phosphoseryl-tRNA(SEC 99.9 2.4E-21 8.3E-26 198.8 27.2 297 145-464 132-455 (456)
222 2fyf_A PSAT, phosphoserine ami 99.9 9.9E-22 3.4E-26 198.2 22.6 286 146-466 78-397 (398)
223 2x3l_A ORN/Lys/Arg decarboxyla 99.9 3.5E-22 1.2E-26 204.3 19.4 284 144-468 55-354 (446)
224 2zy4_A L-aspartate beta-decarb 99.9 9.6E-22 3.3E-26 205.6 22.7 334 102-472 106-527 (546)
225 3n75_A LDC, lysine decarboxyla 99.9 4E-21 1.4E-25 204.0 26.1 298 144-467 193-560 (715)
226 2vyc_A Biodegradative arginine 99.9 2.5E-20 8.7E-25 201.2 29.1 305 144-467 203-605 (755)
227 3bwn_A AT1G70560, L-tryptophan 99.9 1.7E-21 5.8E-26 196.0 17.5 279 149-466 71-386 (391)
228 2hox_A ALLIIN lyase 1; cystein 99.8 3E-20 1E-24 189.0 18.8 279 148-465 102-423 (427)
229 1wyu_A Glycine dehydrogenase ( 99.8 1.8E-19 6.1E-24 184.0 23.3 286 143-464 105-437 (438)
230 4h51_A Aspartate aminotransfer 99.8 9.4E-19 3.2E-23 176.5 25.5 289 148-468 89-418 (420)
231 3e77_A Phosphoserine aminotran 99.8 1E-19 3.5E-24 180.5 14.3 328 103-468 11-376 (377)
232 3m5u_A Phosphoserine aminotran 99.8 5.3E-18 1.8E-22 167.5 22.4 320 100-466 4-359 (361)
233 3qm2_A Phosphoserine aminotran 99.8 3.1E-18 1.1E-22 170.7 17.3 317 112-467 34-385 (386)
234 3ou5_A Serine hydroxymethyltra 99.7 2.3E-16 8E-21 155.3 23.7 321 118-465 68-439 (490)
235 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 6.4E-15 2.2E-19 145.8 27.8 295 159-475 129-469 (501)
236 3bc8_A O-phosphoseryl-tRNA(SEC 99.7 8.1E-15 2.8E-19 147.0 27.1 302 146-469 98-445 (450)
237 3mio_A DHBP synthase, 3,4-dihy 46.5 24 0.00082 30.7 4.8 36 240-275 158-194 (206)
238 2gjh_A Designed protein; oblig 41.9 47 0.0016 21.2 4.3 31 438-469 2-32 (62)
239 1tks_A 3,4-dihydroxy-2-butanon 39.9 28 0.00095 30.2 4.1 36 240-275 159-194 (204)
240 1iv0_A Hypothetical protein; r 36.9 93 0.0032 23.3 6.3 53 216-280 39-96 (98)
241 1snn_A DHBP synthase, 3,4-dihy 35.5 35 0.0012 30.1 4.2 35 240-275 178-212 (227)
242 1nxi_A Conserved hypothetical 33.5 1.8E+02 0.0062 23.1 9.8 97 373-471 17-115 (132)
243 1g57_A DHBP synthase, 3,4-dihy 33.4 45 0.0016 29.2 4.5 35 240-275 167-201 (217)
244 1qys_A TOP7; alpha-beta, novel 31.0 88 0.003 22.1 4.8 31 438-469 46-76 (106)
245 1zco_A 2-dehydro-3-deoxyphosph 28.7 2.3E+02 0.0077 25.5 8.7 57 216-280 142-202 (262)
246 1vhx_A Putative holliday junct 28.2 67 0.0023 26.3 4.6 53 216-280 43-101 (150)
247 3m05_A Uncharacterized protein 28.2 36 0.0012 26.6 2.7 58 407-466 14-71 (114)
248 3o2i_A Uncharacterized protein 27.8 1.5E+02 0.005 22.0 5.7 38 413-460 78-116 (125)
249 3ghf_A Septum site-determining 27.6 2.2E+02 0.0074 22.2 8.4 61 207-274 17-78 (120)
250 1uta_A FTSN, MSGA, cell divisi 25.9 1.1E+02 0.0037 21.7 4.9 52 405-462 17-68 (81)
251 4gqr_A Pancreatic alpha-amylas 23.7 31 0.0011 34.2 2.0 28 253-280 73-100 (496)
252 1nu0_A Hypothetical protein YQ 21.9 1E+02 0.0035 24.8 4.4 53 216-280 41-99 (138)
253 1qyd_A Pinoresinol-lariciresin 21.7 2.4E+02 0.0084 25.3 7.8 54 205-271 55-109 (313)
254 3cf4_G Acetyl-COA decarboxylas 21.2 69 0.0024 26.7 3.4 44 216-275 23-67 (170)
255 1k4i_A 3,4-dihydroxy-2-butanon 20.7 84 0.0029 27.8 3.9 35 240-275 167-212 (233)
256 3fxd_A Protein ICMQ; helix bun 20.4 1E+02 0.0035 20.4 3.2 20 447-466 4-23 (57)
257 3bzy_B ESCU; auto cleavage pro 20.0 50 0.0017 24.1 1.9 21 259-279 29-49 (83)
No 1
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=4e-47 Score=388.17 Aligned_cols=372 Identities=29% Similarity=0.503 Sum_probs=322.2
Q ss_pred ccCCCcc-CCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLS-SAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~-~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
++...+. +++|++++| | |+++|||++++++|+. .+|.+.+++.+++++++.++++++...|.
T Consensus 45 r~~~~~~~~~~g~~~~~-~---------------g~~~id~~~~~~lg~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~G~ 107 (427)
T 2w8t_A 45 PFAIVMEQVKSPTEAVI-R---------------GKDTILLGTYNYMGMT-FDPDVIAAGKEALEKFGSGTCGSRMLNGT 107 (427)
T ss_dssp TTCCCCSEEEETTEEEE-T---------------TEEEEECSCCCTTCGG-GCHHHHHHHHHHHHHHCSCCCSCTTTTCC
T ss_pred eeeeeccccCCCceEee-C---------------CceEEEEECcccccCC-CCHHHHHHHHHHHHHhCCCCcccccccCC
Confidence 4455777 999999999 8 9999999998887764 46899999999999987766667777788
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCCHHHHHHHH
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVL 224 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d~~~Le~~l 224 (488)
.+...++++.+++++|.++++++++|++++..++++++++++.|+++.++|+++..+++..|++++.++++|+++|++.+
T Consensus 108 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~~d~~~le~~l 187 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRL 187 (427)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCCCCHHHHHHHH
Confidence 88899999999999999999999999999988888899999999999999999999999999999999999999999998
Q ss_pred HHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccE
Q 040324 225 REQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDI 304 (488)
Q Consensus 225 ~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di 304 (488)
++. ++.+..+|+++++++++|.+.++++|+++|++||++||+||+|+.+.++++|.+..+++++.+ ++|+
T Consensus 188 ~~~---------~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~-~~di 257 (427)
T 2w8t_A 188 GRL---------PKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEG-QIDF 257 (427)
T ss_dssp HTS---------CSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSE
T ss_pred Hhc---------cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCc-CCcE
Confidence 752 011456888899999999999999999999999999999999998888888888888888864 6799
Q ss_pred EEcccccccCCcccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Q 040324 305 MMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSK 384 (488)
Q Consensus 305 ~~~t~sK~~g~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (488)
+++||||++|.+|||+++++++++.+......+.++.+.++..++++.++|+.+. ..++++++++++.+++++.
T Consensus 258 ~~~s~sK~~g~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~------~~~~~~~~~~~~~~~l~~~ 331 (427)
T 2w8t_A 258 VVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TAHEKRERLWSNARALHGG 331 (427)
T ss_dssp EEEESSSTTCSCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT------SCHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhccCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHH
Confidence 9999999999888999999999888766543344556689999999999999873 3467899999999999999
Q ss_pred HHhCCCeecCCC-CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 385 LQKMGFEVLGDN-DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 385 L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
|+++|+++..+. .++++++.+.......++.+.|+++||.+.+..++..+.+.+++||+++..+|++|+++++++|+++
T Consensus 332 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 332 LKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp HHHHTCEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 999898887444 6788888887656677899999999999998777766666789999999999999999999999999
Q ss_pred HHHhCCc
Q 040324 464 GDLVGIK 470 (488)
Q Consensus 464 ~~~~~~~ 470 (488)
++++...
T Consensus 412 l~~~~~~ 418 (427)
T 2w8t_A 412 GRAVGVI 418 (427)
T ss_dssp HHHHTCC
T ss_pred HHHhCcc
Confidence 9887643
No 2
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=2.4e-45 Score=372.84 Aligned_cols=363 Identities=20% Similarity=0.277 Sum_probs=317.5
Q ss_pred CCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhH
Q 040324 69 RPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALH 148 (488)
Q Consensus 69 ~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~ 148 (488)
.+..++.+.++++.+ |++||||+||+|+|++. ||.+.+++.+++++++.....++...|..+..
T Consensus 43 ~~~~~~~~~~~~~~~---------------g~~~ld~~s~~~l~~~~-~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~ 106 (409)
T 3kki_A 43 DINKNGKHLVLGKQA---------------SPDDIILQSNDYLALAN-HPLIKARLAKSLLEEQQSLFMSASFLQNDYDK 106 (409)
T ss_dssp TTSTTSSCTTCCCCC---------------CTTSEECCCSCTTCCTT-CHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTS
T ss_pred hhccCCCeeeeCCCC---------------CCceEEeeccCccCCcC-CHHHHHHHHHHHHHcCCCCCccccccCCcHHH
Confidence 445567778887777 99999999999999985 58999999999999877666666677777888
Q ss_pred HHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCCHHHHHHHHHHHH
Q 040324 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQI 228 (488)
Q Consensus 149 ~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d~~~Le~~l~~~~ 228 (488)
.++++.++++++.+.++++++|++++..+++++++++|.|+++.++|+++..+++..|++++.++++|+++|++.+.+.
T Consensus 107 ~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~- 185 (409)
T 3kki_A 107 PMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRH- 185 (409)
T ss_dssp CHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhc-
Confidence 8999999999999999999999999998999999999999999999999999999999999999999999999999863
Q ss_pred hcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcc
Q 040324 229 AEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGT 308 (488)
Q Consensus 229 ~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t 308 (488)
+.++|+++++++++|.+.++++|+++|++||++||+||+|+.|.+|++|.+..+.+++. .++|+++.|
T Consensus 186 -----------~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s 253 (409)
T 3kki_A 186 -----------GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTAS 253 (409)
T ss_dssp -----------CSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEE
T ss_pred -----------CCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCC-CCCCEEEee
Confidence 34688889999999999999999999999999999999999777999888866777774 456899999
Q ss_pred cccccCCcccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC
Q 040324 309 FSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM 388 (488)
Q Consensus 309 ~sK~~g~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 388 (488)
+||++|++||++++++++++.+......+.++.+.++..+++++++++.+. ..++++++++++.+++++.|+++
T Consensus 254 ~sK~~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~------~~~~~~~~~~~~~~~l~~~L~~~ 327 (409)
T 3kki_A 254 LAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIE------SADNRRQHLDRMARKLRIGLSQL 327 (409)
T ss_dssp SSSTTCSSCEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHH------HCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhCCCceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHc
Confidence 999999888999999999888877665556666788999999999999874 23678889999999999999999
Q ss_pred CCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 389 GFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
|+++. ..++++++.+.......++.+.|+++||.+.+.+++..+.+.+++||+++..+|++|+++++++|+++++..+
T Consensus 328 g~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~ 405 (409)
T 3kki_A 328 GLTIR--SESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGD 405 (409)
T ss_dssp TCCCC--CSSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHSS
T ss_pred CCccC--CCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 88765 3578888888766667789999999999999888877777788999999999999999999999999987653
No 3
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=1.4e-45 Score=375.63 Aligned_cols=358 Identities=18% Similarity=0.202 Sum_probs=281.1
Q ss_pred cccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEec-cccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCC
Q 040324 65 DCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLG-SYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGG 143 (488)
Q Consensus 65 ~~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~-s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g 143 (488)
..+|..+.+++|+|+||.| |++||||. +.....+||+||++++|+++|++++.+.. ....
T Consensus 44 ~~~P~~i~~a~G~~l~D~d---------------G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~----~~~~ 104 (456)
T 4atq_A 44 SGVPVYVEDADGGIIRDVD---------------GNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTC----FMVT 104 (456)
T ss_dssp CSCSSCEEEEETTEEEETT---------------SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCT----TTTS
T ss_pred CCCCCeEEeeecCEEEeCC---------------CCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcc----cCcc
Confidence 4578888999999999999 99999995 45668899999999999999999974332 2223
Q ss_pred ChhhHHHHHHHHHHHhCC---CCeEEeCCcHHHHhhhh---hcccCCCcEEEEeCCCchHHHHHHHhcCC----------
Q 040324 144 TLALHNELEECVARFVGK---PAAIVFGMGYVTNSSIL---PVLMGKGSLIISDSLNHNSIVNGARGSGA---------- 207 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~---~~~i~~~sGs~a~~~~~---~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~---------- 207 (488)
..+...+|.++|+++.+. +++++++||++||+.++ +..+++..+|.+...+|+.+..++..++.
T Consensus 105 ~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p 184 (456)
T 4atq_A 105 PYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGP 184 (456)
T ss_dssp CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS
T ss_pred CcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCC
Confidence 456678899999999864 46888999999996655 44578888888999999998877665532
Q ss_pred ---eEEEeeCC-----------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHc
Q 040324 208 ---TIRVFQHN-----------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRY 269 (488)
Q Consensus 208 ---~v~~~~~~-----------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~ 269 (488)
.+..+|.+ +.+.+++.++..... .++.+.++||+|||++.+|.+.| |++|+++|++|
T Consensus 185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~ 259 (456)
T 4atq_A 185 FAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQ-----IGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK 259 (456)
T ss_dssp CCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHH-----TCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH
T ss_pred ccccceecccccccccCCCcccHHHHHHHHHHHHHHh-----hcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc
Confidence 23334422 344555444432211 11347899999999999998774 99999999999
Q ss_pred CcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc--cEEEeCHHHHHHHHhhCCCCcccCCCCHH
Q 040324 270 KAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG--GYIAGSKELIQYLKYNCPAHLYATSISPP 346 (488)
Q Consensus 270 g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G--g~i~~~~~~~~~~~~~~~~~~~~~~~~p~ 346 (488)
|++||+||||+ +|||+|.+ +++++|+.| ||+ |++|++|++. |++++++++++.+....+++||+ +||+
T Consensus 260 gillI~DEV~t--G~GRtG~~~a~e~~gv~P---Div--t~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~--gnpl 330 (456)
T 4atq_A 260 GIVFIADEVQS--GFCRTGEWFAVDHEGVVP---DII--TMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYG--GNPV 330 (456)
T ss_dssp TCEEEEECTTT--TTTTTSSSSGGGGTTCCC---SEE--EECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSS--SCHH
T ss_pred CCceEeccccc--ccCCccccccccccCCCC---chh--hhhhcccCcCCceeeEecHHHHhcccccCCCCCCC--CChH
Confidence 99999999999 99999998 889999998 777 9999997533 89999999999887777777777 9999
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC-------CeecCC--CCCCeEEEEeCCc-------ch
Q 040324 347 AAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG-------FEVLGD--NDSPVMPIMVYNP-------AK 410 (488)
Q Consensus 347 ~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-------~~~~~~--~~~~~~~~~~~~~-------~~ 410 (488)
+|++++++|+++ +.+++.+++++.+++|+++|+++. .+++++ ..+.++.+.+..+ ..
T Consensus 331 a~aaala~L~~i-------~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~ 403 (456)
T 4atq_A 331 ACAAALAAIDTM-------EQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAEL 403 (456)
T ss_dssp HHHHHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHH
T ss_pred HHHhhHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHH
Confidence 999999999999 445688889999999998887651 122221 1256777777432 23
Q ss_pred HHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 411 VSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 411 ~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
...+.+.|+++|+++.+.+ +. .+.+||+||+.+|++|+|+++++|+++++..
T Consensus 404 ~~~v~~~~~~~Gvl~~~~g----~~-~~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 404 TKAVAAACLKEGVIILTCG----TY-GNVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp HHHHHHHHHHTTEECEEEC----TT-SCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCEEEecC----CC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 5679999999999998543 12 3789999999999999999999999998753
No 4
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.2e-43 Score=358.57 Aligned_cols=373 Identities=29% Similarity=0.554 Sum_probs=321.9
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCCh
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL 145 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~ 145 (488)
..+.++.+++|.++++ + |++||||++++++|+ +++|.+.+++.+++++++..++.++..+|..
T Consensus 25 ~~~~~~~~~~g~~v~~-~---------------g~~~id~~~~~~~g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~ 87 (399)
T 3tqx_A 25 KSERIITSPQNAEIKV-G---------------EKEVLNFCANNYLGL-ADHPALIKTAQTVVEQYGFGMASVRFICGTQ 87 (399)
T ss_dssp CCCCCBCSCSSSEEEE-T---------------TEEEEECSSCCTTSC-TTCHHHHHHHHHHHHHHCSCCCSCCCCCCCB
T ss_pred cccccccCCCCceEee-C---------------CeeEEEeeccCcccc-cCCHHHHHHHHHHHHHhCCCCCCcCccccCc
Confidence 4466788999999999 7 999999999888886 4578999999999999877666666677888
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCCHHHHHHHHH
Q 040324 146 ALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLR 225 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d~~~Le~~l~ 225 (488)
+...++++.++++++.++.+++++|++++..++.++.++++.|+++.++|+++..+++..|.+++.++++|+++|++.++
T Consensus 88 ~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~ 167 (399)
T 3tqx_A 88 TIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLK 167 (399)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECTTCTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCCCCHHHHHHHHH
Confidence 88999999999999999999999999999888899999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEE
Q 040324 226 EQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIM 305 (488)
Q Consensus 226 ~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~ 305 (488)
+...++ .++.+|+++++++++|.+.++++|+++|++||+++|+||+|+.|.+++++.+..+.+++. .+.|++
T Consensus 168 ~~~~~~-------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~di~ 239 (399)
T 3tqx_A 168 EADEKG-------ARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVA-DRVDIL 239 (399)
T ss_dssp HHHTTT-------CSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCT-TCCSEE
T ss_pred hhhccC-------CCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCC-CCCcEE
Confidence 753211 145678888999999999999999999999999999999998666788877777777763 345899
Q ss_pred EcccccccC-CcccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Q 040324 306 MGTFSKSFG-SYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSK 384 (488)
Q Consensus 306 ~~t~sK~~g-~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (488)
++|+||++| ..|||+++++++++.+......+.++.+.++..++++.++++.+. +..++.+++++++.+++.+.
T Consensus 240 ~~s~sK~~~g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~l~~~ 314 (399)
T 3tqx_A 240 TGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-----TEGPQLRKQLQENSRYFRAG 314 (399)
T ss_dssp EEESSSSSCSSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHH
T ss_pred EecchHhcccCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHH
Confidence 999999998 778999999999999987655555555689999999999998762 15678999999999999999
Q ss_pred HHhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 385 LQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 385 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
|++.|+++. +..++++++.+.......++.++|+++||.+.+..++..+.+.+++||+++..+|++|+++++++|++++
T Consensus 315 L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 393 (399)
T 3tqx_A 315 MEKLGFQLV-PGNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVG 393 (399)
T ss_dssp HHHHTCCBC-CCSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 999998876 4456788888776667789999999999999987776666677899999998999999999999999999
Q ss_pred HHhCC
Q 040324 465 DLVGI 469 (488)
Q Consensus 465 ~~~~~ 469 (488)
++++.
T Consensus 394 ~~~~~ 398 (399)
T 3tqx_A 394 KKLGA 398 (399)
T ss_dssp HHTTC
T ss_pred HHhcC
Confidence 88753
No 5
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=4.1e-44 Score=366.22 Aligned_cols=352 Identities=14% Similarity=0.126 Sum_probs=275.8
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEec-cccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLG-SYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~-s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
..|..|++++|+|+||.| |++||||. +...+.+||+||++.+|+.+|++++..... .....
T Consensus 48 ~~P~vi~rg~G~~l~D~d---------------G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~---~~~~~ 109 (473)
T 4e3q_A 48 RGTVVVTHGEGPYIVDVN---------------GRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA---FFGRM 109 (473)
T ss_dssp HCCEEEEEEETTEEEETT---------------CCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCC---CTTEE
T ss_pred CCCEEEEeeecCEEEeCC---------------CCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccc---ccccc
Confidence 457789999999999999 99999995 456678999999999999999999743321 11124
Q ss_pred hhhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhhhhhcc---------cCCCcEEEEeCCCchHHHHHHHhcCCe-----
Q 040324 145 LALHNELEECVARFVGK--PAAIVFGMGYVTNSSILPVL---------MGKGSLIISDSLNHNSIVNGARGSGAT----- 208 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~~~~~~---------~~~~~~Vl~~~~~h~~~~~~~~~~g~~----- 208 (488)
++...+|.++|++..+. +++++.+||++||+.+++.. .++..+|.....+|+.+..++..++..
T Consensus 110 ~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~ 189 (473)
T 4e3q_A 110 SDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVF 189 (473)
T ss_dssp EHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGG
T ss_pred CHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccccccc
Confidence 56778999999999864 57999999999998777653 345567778889999998887766421
Q ss_pred ------EEEeeCC------------------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hH
Q 040324 209 ------IRVFQHN------------------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LP 260 (488)
Q Consensus 209 ------v~~~~~~------------------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~ 260 (488)
...++.. ..+++++.+.+. .+.+.++||+|||++.+|.+.| |+
T Consensus 190 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---------~~~~iAavi~EPiqg~gG~~~p~~~fl~ 260 (473)
T 4e3q_A 190 GLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQRE---------GADTIAGFFAEPVMGAGGVIPPAKGYFQ 260 (473)
T ss_dssp TCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH---------CGGGEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred CCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhh---------CCCceEEEEeCCccCCCCceeCCHHHHH
Confidence 2222211 124455555542 1347899999999999998774 99
Q ss_pred HHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhh---
Q 040324 261 EIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYN--- 333 (488)
Q Consensus 261 ~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~--- 333 (488)
+|+++|++||++||+|||++ +|||||.+ +++++|+.| ||+ |++|++++++ |++++++++++.+...
T Consensus 261 ~lr~lc~~~gilLI~DEV~t--GfGRtG~~fa~e~~gv~P---Di~--t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~ 333 (473)
T 4e3q_A 261 AILPILRKYDIPVISDEVIC--GFGRTGNTWGCVTYDFTP---DAI--ISSKNLTAGFFPMGAVILGPELSKRLETAIEA 333 (473)
T ss_dssp HHHHHHHHTTCCEEEECTTT--SSSTTSSSCHHHHTTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHhcccceEEeccCccc--cCCcccchhHHHhcCCCC---ChH--HhcccccCCCCCcccccccHHHHHHhcccccc
Confidence 99999999999999999999 99999998 789999998 777 9999997653 9999999999887542
Q ss_pred ----CCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC-CeecCC--CCCCeEEEEeC
Q 040324 334 ----CPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG-FEVLGD--NDSPVMPIMVY 406 (488)
Q Consensus 334 ----~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~~~~~~~ 406 (488)
.+++||+ +||++|++++++|+++ +.+++.+++++.+++|+++|+++. .+.+++ ..+.++.+.+.
T Consensus 334 ~~~~~hg~T~~--Gnpla~Aaala~L~~i-------~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv 404 (473)
T 4e3q_A 334 IEEFPHGFTAS--GHPVGCAIALKAIDVV-------MNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAV 404 (473)
T ss_dssp HSCCCCCCTTT--TCHHHHHHHHHHHHHH-------HHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC
T ss_pred ccccccCCCCC--CCcchhhhhhhhhhhh-------ccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEe
Confidence 4566666 9999999999999999 445788899999999999998761 111111 12456666653
Q ss_pred Cc-----------chHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 407 NP-----------AKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 407 ~~-----------~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
.+ .....+.+.|+++|+++.+.+ +.+||+||+.+|++|+|+++++++++++++.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g--------~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 405 KDKASKTPFDGNLSVSERIANTCTDLGLICRPLG--------QSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp SBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEET--------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccccccccHHHHHHHHHHHHHCCcEEEecC--------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 21 224579999999999998643 6899999999999999999999999998763
No 6
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=2.5e-45 Score=372.10 Aligned_cols=343 Identities=13% Similarity=0.117 Sum_probs=271.8
Q ss_pred cccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEe-ccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCC
Q 040324 65 DCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNL-GSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGG 143 (488)
Q Consensus 65 ~~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~-~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g 143 (488)
.+||..+.+++|+|+||+| |++|||| +++..+.+||+||+|++|+++|+++.. +.+ +
T Consensus 67 ~~~P~~i~~a~G~~l~D~d---------------G~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~-~~~------~ 124 (454)
T 4ao9_A 67 APFPLTIARGEGAALWDAD---------------GHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI-NLT------G 124 (454)
T ss_dssp SSCCCEEEEEETTEEEETT---------------CCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS-CCC------S
T ss_pred CCCCccEEEeecCEEEECC---------------CCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC-Ccc------C
Confidence 4578889999999999999 9999999 456778899999999999999998742 222 2
Q ss_pred ChhhHHHHHHHHHHHhC-CCCeEEeCCcHHHHhhhhhc---ccCCCcEEEEeCCCchHHHHHHHhc-----CCeEEEeeC
Q 040324 144 TLALHNELEECVARFVG-KPAAIVFGMGYVTNSSILPV---LMGKGSLIISDSLNHNSIVNGARGS-----GATIRVFQH 214 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g-~~~~i~~~sGs~a~~~~~~~---~~~~~~~Vl~~~~~h~~~~~~~~~~-----g~~v~~~~~ 214 (488)
.+....+++++|++.++ .++++|++||++||+.+++. .+++.++|.+...+|+.+....... ......+++
T Consensus 125 ~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~ 204 (454)
T 4ao9_A 125 HNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY 204 (454)
T ss_dssp EESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT
T ss_pred CcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC
Confidence 34556899999999885 46789999999999766554 5688888888999998765332221 234667889
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEccccccccCCCCCC
Q 040324 215 NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG 290 (488)
Q Consensus 215 ~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~ 290 (488)
||++++++.+++.. ...++||+|||+++.|.++| |++|+++|++||++||+||||+ ||+|.+
T Consensus 205 nd~~~l~~~l~~~~----------~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t----GR~G~~ 270 (454)
T 4ao9_A 205 NDAQTARAQIERHG----------PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT----SRLAPH 270 (454)
T ss_dssp TCHHHHHHHHHHTG----------GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG----GGGSTT
T ss_pred chHHHHHHHHhhcC----------CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc----CCCccc
Confidence 99999999998742 26899999999999999887 9999999999999999999998 478877
Q ss_pred -cchhcCCCCCCccEEEcccccccCCc--ccEEEeCHHHHHHHHhhC----CCCcccCCCCHHHHHHHHHHHHHHhccCC
Q 040324 291 -VCELLGVDTSDVDIMMGTFSKSFGSY--GGYIAGSKELIQYLKYNC----PAHLYATSISPPAAEQIISAIQVVIGEDG 363 (488)
Q Consensus 291 -~~~~~~v~p~~~di~~~t~sK~~g~~--Gg~i~~~~~~~~~~~~~~----~~~~~~~~~~p~~~aa~~a~L~~i~~~~~ 363 (488)
+++++|+.| |++ |++|++|++ .|++++++++++.+.... ++.||+ +||++|++++++|+++
T Consensus 271 ~a~e~~gv~P---Di~--t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~--gnPla~AAala~L~~l----- 338 (454)
T 4ao9_A 271 GLANKLGIRS---DLT--TLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFN--NNVMTMAAGYAGLTKL----- 338 (454)
T ss_dssp CHHHHHTCCC---SEE--EEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTT--TCHHHHHHHHHHHHHT-----
T ss_pred cchhccCCCC---cEE--EeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCC--CCHHHHHHHHHHHHHH-----
Confidence 789999998 777 999999763 399999999999886432 344444 9999999999999998
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCCc-------------chHHHHHHHHHHCCceEE
Q 040324 364 SCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYNP-------------AKVSSFSRECLKQNVAIV 426 (488)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~Gi~v~ 426 (488)
..+++.+++.+++++|+++|+++ ++.......+.++.+.+... .....+.+.|+++||++.
T Consensus 339 --~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~ 416 (454)
T 4ao9_A 339 --FTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSS 416 (454)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECC
T ss_pred --hccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEc
Confidence 34678899999999999999875 32211112346666665321 123468889999999886
Q ss_pred eecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 427 TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 427 ~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
|. + ++.+++.||++|||+++++|++++.+++
T Consensus 417 p~---------~--~~~~s~~~T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 417 PR---------G--FVVLSLPLTDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp TT---------C--EEECCTTCCHHHHHHHHHHHHHHHHHSG
T ss_pred CC---------C--CEEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 31 2 3456778999999999999999998865
No 7
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=2.7e-42 Score=349.30 Aligned_cols=373 Identities=30% Similarity=0.514 Sum_probs=309.2
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCCh
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL 145 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~ 145 (488)
.++..+.+++|++++|.| |++||||++++++|+. ++|.+.+++.+++++++..++.++...|..
T Consensus 26 ~~~~~~~~~~g~~~~~~~---------------g~~~id~~~~~~~g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~ 89 (401)
T 1fc4_A 26 KEERIITSAQQADITVAD---------------GSHVINFCANNYLGLA-NHPDLIAAAKAGMDSHGFGMASVRFICGTQ 89 (401)
T ss_dssp CCCCCBCSCSSSEEEBTT---------------SCEEEECCCSCTTSCT-TCHHHHHHHHHHHHHHCSCCCSCHHHHCCB
T ss_pred eeeeeeccCCCceEEeeC---------------CccEEEeeccCccccc-CCHHHHHHHHHHHHHhCCCCCCCCcccCCc
Confidence 567888999999999988 9999999888776642 468999999999998776554444444556
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCCHHHHHHHHH
Q 040324 146 ALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLR 225 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d~~~Le~~l~ 225 (488)
+...++++.+++++|.++.+++++|++++..+++++.++++.|+++.++|+++..+++..|.+++.++.+|+++|++.++
T Consensus 90 ~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~ 169 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLK 169 (401)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECCCCHHHHHHHHH
Confidence 77899999999999988899999999999888888999999999999999999999999999999999999999999987
Q ss_pred HHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEE
Q 040324 226 EQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIM 305 (488)
Q Consensus 226 ~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~ 305 (488)
+...++ .+..+|+++++++++|.+.++++|+++|++||+++|+||+|+.+..+++|++..+++++.+ ++|++
T Consensus 170 ~~~~~~-------~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~ 241 (401)
T 1fc4_A 170 EAREAG-------ARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDII 241 (401)
T ss_dssp HHHHTT-------CSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEE
T ss_pred HhhccC-------CCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEE
Confidence 632211 0245777789999999999999999999999999999999975555667776666677765 67899
Q ss_pred Eccccccc-CCcccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Q 040324 306 MGTFSKSF-GSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSK 384 (488)
Q Consensus 306 ~~t~sK~~-g~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (488)
+.|+||++ |+.||++++++++++.+......+.++.+.+++.++++.++|+.+. ..+++.++++++.+++.+.
T Consensus 242 ~~s~sK~~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~l~~~ 315 (401)
T 1fc4_A 242 TGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVE------AGSELRDRLWANARQFREQ 315 (401)
T ss_dssp EEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHH
T ss_pred EecchhhccCCCCEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHH
Confidence 99999999 6678999999999998876553333344689999999999998873 2367889999999999999
Q ss_pred HHhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 385 LQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 385 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
|++.|+++. +..++++++.+.......++.+.|.++||.+.+..++..+.+.+++||+++..+|++|+++++++|++++
T Consensus 316 L~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 394 (401)
T 1fc4_A 316 MSAAGFTLA-GADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp HHHTTCCBC-CSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCccc-CCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 999988876 4567888887755456678999999999999886655544456789999988899999999999999999
Q ss_pred HHhCC
Q 040324 465 DLVGI 469 (488)
Q Consensus 465 ~~~~~ 469 (488)
++++.
T Consensus 395 ~~~~~ 399 (401)
T 1fc4_A 395 KQLGV 399 (401)
T ss_dssp HHTTS
T ss_pred HHhCC
Confidence 88754
No 8
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=3.7e-41 Score=340.66 Aligned_cols=372 Identities=31% Similarity=0.559 Sum_probs=303.5
Q ss_pred cccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 65 DCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 65 ~~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
..++..+.+++|++++ .+ |++++||++++++++. .++.+.+++.++++++...+..++...|.
T Consensus 24 ~~~~~~~~~~~g~~~~-~~---------------g~~~idl~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~ 86 (398)
T 3a2b_A 24 YAYFRPIQSKQDTEVK-ID---------------GRRVLMFGSNSYLGLT-TDTRIIKAAQDALEKYGTGCAGSRFLNGT 86 (398)
T ss_dssp CCSSCCBCSCSSSEEE-ET---------------TEEEEECSCSCTTCGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCC
T ss_pred ccceeeecCCCCceEE-EC---------------CceEEEeecccccCCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCC
Confidence 3577889999999999 77 8999999887665553 36899999999998865544444445577
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCCHHHHHHHH
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVL 224 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d~~~Le~~l 224 (488)
.+..+++++.+++++|.++++++++|++++..+++++.++++.|+++.++|+++...++..|.+++.++..|+++|++.+
T Consensus 87 ~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l 166 (398)
T 3a2b_A 87 LDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKL 166 (398)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Confidence 78889999999999999888999999999988999999999999999999999999999999999999999999999988
Q ss_pred HHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccE
Q 040324 225 REQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDI 304 (488)
Q Consensus 225 ~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di 304 (488)
++.. +.++.+|+++++++++|.+.++++|+++|++||+++|+||+|+.+.+++++....+.+++. +.+|+
T Consensus 167 ~~~~---------~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~di 236 (398)
T 3a2b_A 167 SRLP---------EDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLN-DDVDL 236 (398)
T ss_dssp HTSC---------SSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSE
T ss_pred Hhhc---------cCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCC-cCCeE
Confidence 7520 1134577788999999999999999999999999999999999777776665555555653 33589
Q ss_pred EEcccccccCCcccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Q 040324 305 MMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSK 384 (488)
Q Consensus 305 ~~~t~sK~~g~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (488)
+++|+||++|.+|||+++++++++.+......+.++.+.++..++++.++|+.+. +.++.+++++++.+++.+.
T Consensus 237 ~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~------~~~~~~~~~~~~~~~l~~~ 310 (398)
T 3a2b_A 237 IMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQ------NEPEHIEKLWKNTDYAKAQ 310 (398)
T ss_dssp EEEESSSTTCSSCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH------HCTHHHHHHHHHHHHHHHH
T ss_pred EEecccccccCCCcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHh------hCHHHHHHHHHHHHHHHHH
Confidence 9999999999778999999999998876432233444577777777778887652 3457888999999999999
Q ss_pred HHhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 385 LQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 385 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
|+++|+++..+ .++++++.+.......++.+.|+++||.+.+..++..+.+.+++||+++..+|++|+++++++|++++
T Consensus 311 L~~~g~~~~~~-~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l 389 (398)
T 3a2b_A 311 LLDHGFDLGAT-ESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVF 389 (398)
T ss_dssp HHHTTCCBCSC-CSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcCCC-CCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99998887654 46888887765456778999999999999985544333345799999988889999999999999999
Q ss_pred HHhCCc
Q 040324 465 DLVGIK 470 (488)
Q Consensus 465 ~~~~~~ 470 (488)
++++.+
T Consensus 390 ~~~~~~ 395 (398)
T 3a2b_A 390 KQAEVE 395 (398)
T ss_dssp HHCC--
T ss_pred HHhCcc
Confidence 988654
No 9
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=3.1e-42 Score=355.60 Aligned_cols=352 Identities=17% Similarity=0.180 Sum_probs=275.3
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.+++|.++||.| |++||||+|+. ...+||+||.+.+|+.+|++++...++. ..+.
T Consensus 36 ~~p~~~~~~~G~~l~d~~---------------G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~---~~~~ 97 (472)
T 3hmu_A 36 EGTRVITRARGVWLNDSE---------------GEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTF---FKTT 97 (472)
T ss_dssp HCCEEEEEEEBTEEEETT---------------CCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSS---SSEE
T ss_pred CCCeeEEEeecCEEEECC---------------CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccc---cccC
Confidence 357788999999999999 99999997763 3567888999999999999997644332 2245
Q ss_pred hhhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhhhhhccc---------CCCcEEEEeCCCchHHHHHHHhcCC------
Q 040324 145 LALHNELEECVARFVGK--PAAIVFGMGYVTNSSILPVLM---------GKGSLIISDSLNHNSIVNGARGSGA------ 207 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~~~~~~~---------~~~~~Vl~~~~~h~~~~~~~~~~g~------ 207 (488)
.+...+|+++|+++++. ++++++++|++|+..+++.+. ++..+|..+..+|+.+..+...++.
T Consensus 98 ~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~ 177 (472)
T 3hmu_A 98 HVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQ 177 (472)
T ss_dssp CHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHT
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccc
Confidence 67789999999999864 578999999999988777764 3455666677788887776666543
Q ss_pred -----eEEEee--C----CC-----------HHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHH
Q 040324 208 -----TIRVFQ--H----NT-----------PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPE 261 (488)
Q Consensus 208 -----~v~~~~--~----~d-----------~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~ 261 (488)
.+..++ . ++ +++|++++++.. +.++++||+|++++++|.+.+ |++
T Consensus 178 ~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~---------~~~~aavi~epv~~~gG~~~~~~~~l~~ 248 (472)
T 3hmu_A 178 SGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELG---------ENRVAAFIAEPVQGAGGVIVAPDSYWPE 248 (472)
T ss_dssp TCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHC---------GGGEEEEEECSSBSTTTCBCCCTTHHHH
T ss_pred cCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcC---------CCCEEEEEEcCccCCCCcccCCHHHHHH
Confidence 233333 2 22 778888887521 236789999999999999887 999
Q ss_pred HHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhh--CC
Q 040324 262 IITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYN--CP 335 (488)
Q Consensus 262 l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~--~~ 335 (488)
|+++|++||++||+||||+ +||++|.. ..+++++.| |++ ||||++|++| |++++++++++.+... .+
T Consensus 249 l~~l~~~~gillI~DEv~~--gfgr~G~~~a~~~~~v~p---di~--t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~ 321 (472)
T 3hmu_A 249 IQRICDKYDILLIADEVIC--GFGRTGNWFGTQTMGIRP---HIM--TIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNH 321 (472)
T ss_dssp HHHHHHHTTCEEEEECTTT--TTTTTSSSCHHHHHTCCC---SEE--EECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCC
T ss_pred HHHHHHHcCCEEEEEcccc--CCcccCccchhHHhCCCC---cee--eechhhhcCCcceEEEEECHHHHHhcccCCccc
Confidence 9999999999999999999 89999965 678899987 676 8999998765 9999999999998322 33
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHH-HHHHHHHHHHHhCC-Ce--ecCCCCCCeEEEEeCCc---
Q 040324 336 AHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIR-ENSNFFRSKLQKMG-FE--VLGDNDSPVMPIMVYNP--- 408 (488)
Q Consensus 336 ~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~g-~~--~~~~~~~~~~~~~~~~~--- 408 (488)
+++++ +||+++++++++|+.+. .+++.++++ ++.+++++.|+++. .+ ......+.++.+.+...
T Consensus 322 ~~t~~--~np~a~aAa~aaL~~~~-------~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~ 392 (472)
T 3hmu_A 322 GYTYS--GHPVAAAVALENLRILE-------EENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKAS 392 (472)
T ss_dssp CCTTT--TCHHHHHHHHHHHHHHH-------HTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGG
T ss_pred cCCCC--CCHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccc
Confidence 43444 99999999999999883 346788888 99999999997752 11 11122356677766532
Q ss_pred ---------chHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 409 ---------AKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 409 ---------~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
....++++.|+++||++.+.+ +++||+||+.+|++|+++++++|+++++++.
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 393 RAKFASEPGTIGYICRERCFANNLIMRHVG--------DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp TCCBSSCTTHHHHHHHHHHHHTTBCCEEET--------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHCCcEEEecC--------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 125688999999999998632 7899999999999999999999999987764
No 10
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=8.5e-41 Score=336.31 Aligned_cols=363 Identities=26% Similarity=0.445 Sum_probs=298.7
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCCh
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL 145 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~ 145 (488)
.++..+.+++|.+++ .+ |++||||+++.++++. .+|.+.+++.+++++++..++.++..+|..
T Consensus 21 ~~~~~~~~~~g~~~~-~~---------------g~~~id~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~ 83 (384)
T 1bs0_A 21 RRRYPVAQGAGRWLV-AD---------------DRQYLNFSSNDYLGLS-HHPQIIRAWQQGAEQFGIGSGGSGHVSGYS 83 (384)
T ss_dssp CCCCCCSBCSSSEEE-ET---------------TEEEEECSCCCTTSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCC
T ss_pred cccccccCCCCceEE-EC---------------CceEEEeeccCccCCC-CCHHHHHHHHHHHHHhCCCCCCcCcccCCh
Confidence 456678899999999 56 8999999887665543 468999999999988765444445545667
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCCHHHHHHHHH
Q 040324 146 ALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLR 225 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d~~~Le~~l~ 225 (488)
+...++++.+++++|.++.+++++|++++..+++++.++++.|+++.++|+++...++..|.+++.++.+|+++|++.++
T Consensus 84 ~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~ 163 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLA 163 (384)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 88899999999999998899999999999888888899999999999999999999999999999999999999999887
Q ss_pred HHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEE
Q 040324 226 EQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIM 305 (488)
Q Consensus 226 ~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~ 305 (488)
+. +..+++|+++++++++|.+.++++|+++|++||+++|+||+|+.|.++++|....+.++.. .|++
T Consensus 164 ~~----------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~---~di~ 230 (384)
T 1bs0_A 164 SP----------CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVK---PELL 230 (384)
T ss_dssp SC----------CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCC---CSEE
T ss_pred hc----------CCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCC---CcEE
Confidence 51 1135788889999999999999999999999999999999998766666666544555543 3799
Q ss_pred EcccccccCCcccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Q 040324 306 MGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKL 385 (488)
Q Consensus 306 ~~t~sK~~g~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L 385 (488)
++|+||++|.+||++++++++++.+......+.++++.+++.++++.++|+.+... ..++..++++++.+++.+.|
T Consensus 231 ~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~~~~l~~~L 306 (384)
T 1bs0_A 231 VVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSD----EGDARREKLAALITRFRAGV 306 (384)
T ss_dssp EEESSSTTSSCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHH
T ss_pred EeeccchhhccCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHH
Confidence 99999999988899999999999887654333344458999999999999887310 34578889999999999999
Q ss_pred HhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 386 QKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 386 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
+++|+++.. ..++++++.+.......++.+.|+++||.+.+..++..+.+.+++||+++..+|++|+++++++|+++
T Consensus 307 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 307 QDLPFTLAD-SCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp TTSSCEECS-CCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred HhcCCcccC-CCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 999988764 45677777765444567899999999999998665544445679999998888999999999999864
No 11
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=7.4e-42 Score=350.08 Aligned_cols=346 Identities=14% Similarity=0.149 Sum_probs=277.9
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecc-ccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGS-YNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s-~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.+++|+++||.| |++||||++ +++++++|+||++.+|+.++++++.... +. ..
T Consensus 57 ~~~~~~~~~~G~~~~d~~---------------g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~---~~--~~ 116 (439)
T 2oat_A 57 PLPVALERGKGIYLWDVE---------------GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTS---RA--FY 116 (439)
T ss_dssp CCSCEEEEEEBTEEEETT---------------CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCC---TT--SE
T ss_pred CCCeeEEeeecCEEEECC---------------CCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCccc---Cc--cC
Confidence 345556899999999999 999999976 6778999999999999999998864321 11 13
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhccc---------CCC-cEEE-EeCCCchHHHHHHHhcC-------
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLM---------GKG-SLII-SDSLNHNSIVNGARGSG------- 206 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~---------~~~-~~Vl-~~~~~h~~~~~~~~~~g------- 206 (488)
.+...++++.++++++.++++++++|++|+..+++.+. .++ +.|+ .+..+|+.+..++..++
T Consensus 117 ~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 196 (439)
T 2oat_A 117 NNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG 196 (439)
T ss_dssp ESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTT
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccC
Confidence 56678999999999998889999999999987777653 234 4444 55567777777776665
Q ss_pred -----CeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCC----ChHHHHHHHHHcCcEEEEEc
Q 040324 207 -----ATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELC----KLPEIITICKRYKAYTYLDE 277 (488)
Q Consensus 207 -----~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~----~l~~l~~l~~~~g~~li~DE 277 (488)
..+..++++|+++|++.++. .++++|+++++++++|.+. ++++|+++|++||++||+||
T Consensus 197 ~~p~~~~v~~~~~~d~~~le~~l~~------------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE 264 (439)
T 2oat_A 197 FGPFMPGFDIIPYNDLPALERALQD------------PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADE 264 (439)
T ss_dssp SCSCCTTEEEECSSCHHHHHHHTTS------------TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCC------------CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 56788899999999998852 1567888999999999876 69999999999999999999
Q ss_pred cccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc---ccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHH
Q 040324 278 AHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY---GGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIIS 353 (488)
Q Consensus 278 ~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~---Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a 353 (488)
+|+ ++|++|.+ ..+++++.| |++ ||||++|++ +|++++++++++.+....++.+++ +||+.++++.+
T Consensus 265 v~~--g~g~~g~~~~~~~~~~~~---Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~--~~~~~~aaa~a 335 (439)
T 2oat_A 265 IQT--GLARTGRWLAVDYENVRP---DIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYG--GNPLGCRVAIA 335 (439)
T ss_dssp TTT--TTTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSST--TCHHHHHHHHH
T ss_pred ccc--CCccCCcchhHHHhCCCC---cEE--EecccccCCCCCeEEEEECHHHHhccCCCCcccCCC--cCHHHHHHHHH
Confidence 997 79999987 458888876 666 999999865 599999999988776555555555 89999999999
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeec--CCCCCCeEEEEeCCc--chHHHHHHHHHHCCceEEeec
Q 040324 354 AIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL--GDNDSPVMPIMVYNP--AKVSSFSRECLKQNVAIVTVG 429 (488)
Q Consensus 354 ~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~l~~~Gi~v~~~~ 429 (488)
+|+.+. .+++.++++++++++++.|+++++++. ....+.++++.+... ....++++.|+++||.+.+.
T Consensus 336 al~~~~-------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~- 407 (439)
T 2oat_A 336 ALEVLE-------EENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT- 407 (439)
T ss_dssp HHHHHH-------HTTHHHHHHHHHHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS-
T ss_pred HHHHHh-------hhhHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC-
Confidence 999883 235788899999999999998765431 123467888877654 34678999999999998851
Q ss_pred CCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 430 FPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 430 ~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
+.+++||+|++.+|++|+++++++|++++++
T Consensus 408 ------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 408 ------HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp ------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 2478999999999999999999999998764
No 12
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=4.7e-41 Score=347.28 Aligned_cols=352 Identities=16% Similarity=0.146 Sum_probs=276.3
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
..|..+.+++|+++||.| |++||||+|+.+ ..+||+||.+.+|+.++++++...+.. .+.
T Consensus 35 ~~p~~~~~~~G~~~~d~~---------------G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~----~~~ 95 (476)
T 3i5t_A 35 SAQPVLTHAEGIYVHTED---------------GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW----YMA 95 (476)
T ss_dssp CCCCBEEEEEBTEEEETT---------------CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT----TCB
T ss_pred CCCeeEEEeecCEEEECC---------------CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC----ccC
Confidence 357889999999999999 999999977643 567888999999999999986543321 356
Q ss_pred hhhHHHHHHHHHHHhC--CCCeEEeCCcHHHHhhhhhcc---------cCCCcEEEEeCCCchHHHHHHHhcCCe-----
Q 040324 145 LALHNELEECVARFVG--KPAAIVFGMGYVTNSSILPVL---------MGKGSLIISDSLNHNSIVNGARGSGAT----- 208 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g--~~~~i~~~sGs~a~~~~~~~~---------~~~~~~Vl~~~~~h~~~~~~~~~~g~~----- 208 (488)
.+...+|++.++++++ .++++++++|++|+..+++.+ .++..+|+.+..+|+.+..+...++..
T Consensus 96 ~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 175 (476)
T 3i5t_A 96 TSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPN 175 (476)
T ss_dssp CHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTT
T ss_pred CHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccc
Confidence 7888999999999985 467899999999998877776 445566777778888887776655432
Q ss_pred -------EEEee--C-----C-C--------HHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHH
Q 040324 209 -------IRVFQ--H-----N-T--------PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPE 261 (488)
Q Consensus 209 -------v~~~~--~-----~-d--------~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~ 261 (488)
+..++ + + | +++|++++++.. +.++++||+|++++++|.+.+ |++
T Consensus 176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~---------~~~~aavi~ep~~~~~G~~~~~~~~L~~ 246 (476)
T 3i5t_A 176 FDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG---------PDTIAAFLAEPILASGGVIIPPAGYHAR 246 (476)
T ss_dssp SCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC---------GGGEEEEEECSSBTTTTSBCCCTTHHHH
T ss_pred cCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC---------CCCEEEEEECCccCCCCcccCCHHHHHH
Confidence 22333 2 2 1 788888887521 136789999999999998776 999
Q ss_pred HHHHHHHcCcEEEEEccccccccCCCCCC-cch-hcCCCCCCccEEEcccccccCCc---ccEEEeCHHHHHHHHhh---
Q 040324 262 IITICKRYKAYTYLDEAHSIGAVGKTGRG-VCE-LLGVDTSDVDIMMGTFSKSFGSY---GGYIAGSKELIQYLKYN--- 333 (488)
Q Consensus 262 l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~-~~~v~p~~~di~~~t~sK~~g~~---Gg~i~~~~~~~~~~~~~--- 333 (488)
|+++|++||++||+||||+ +||++|.. .++ ++++.| |++ ||||++|++ .|++++++++++.+...
T Consensus 247 l~~lc~~~gillI~DEv~~--g~gr~G~~~~~~~~~~v~p---di~--t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~ 319 (476)
T 3i5t_A 247 FKAICEKHDILYISDEVVT--GFGRCGEWFASEKVFGVVP---DII--TFAKGVTSGYVPLGGLAISEAVLARISGENAK 319 (476)
T ss_dssp HHHHHHHTTCEEEEECTTT--TTTTTSSSCHHHHTTCCCC---SEE--EECGGGGTTSSCCEEEEECHHHHHTTSGGGCT
T ss_pred HHHHHHHcCCEEEEEeccc--CCccccCceeeecccCCCc---chh--hhhhhhcCCCcCeEEEEECHHHHHHHhcCCcc
Confidence 9999999999999999999 89999976 567 889987 676 899999763 28999999999988754
Q ss_pred ----CCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC-Cee--cCCCCCCeEEEEeC
Q 040324 334 ----CPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG-FEV--LGDNDSPVMPIMVY 406 (488)
Q Consensus 334 ----~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~--~~~~~~~~~~~~~~ 406 (488)
.++++++ +||+++++++++|+.+. .+++.++++++.+++++.|++++ .+. .....+.++++.+.
T Consensus 320 ~~~~~~~~t~~--~np~a~aAa~aaL~~~~-------~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~ 390 (476)
T 3i5t_A 320 GSWFTNGYTYS--NQPVACAAALANIELME-------REGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCL 390 (476)
T ss_dssp TCEECCCCTTT--TCHHHHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEEC
T ss_pred cccccccCCCC--cCHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEe
Confidence 4444554 99999999999999883 35688899999999999998763 211 11223566677665
Q ss_pred Ccc-----------hHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCC
Q 040324 407 NPA-----------KVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469 (488)
Q Consensus 407 ~~~-----------~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~ 469 (488)
... ....+++.|+++||++.+.+ +++||+||+.+|++|+++++++|+++++++..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--------~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 391 LDPTRADGTAEDKAFTLKIDERCFELGLIVRPLG--------DLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHTTEECEEET--------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccccccchhHHHHHHHHHHHHCCCEEEecC--------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 431 25678999999999998632 78999999999999999999999999877643
No 13
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=8.2e-42 Score=349.23 Aligned_cols=349 Identities=17% Similarity=0.184 Sum_probs=268.7
Q ss_pred cCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecc-ccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCCh
Q 040324 67 FGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGS-YNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL 145 (488)
Q Consensus 67 ~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s-~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~ 145 (488)
+|..+.+++|+++||.| |++||||++ ++++.++|+||.+.+|+.+++++..... + . ...
T Consensus 47 ~~~~~~~~~g~~~~d~~---------------G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~---~-~-~~~ 106 (433)
T 1z7d_A 47 IPVVLKRAKGVFVYDVN---------------DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICS---R-A-FFS 106 (433)
T ss_dssp EEEEEEEEEBTEEEETT---------------CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCC---T-T-SEE
T ss_pred CCceEEeeecCEEEECC---------------CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCcc---C-C-cCC
Confidence 34556899999999998 999999976 5678999899999999999998864321 1 1 256
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhccc---------CCC-cEEEEeC-CCchHHHHHHHhcC--------
Q 040324 146 ALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLM---------GKG-SLIISDS-LNHNSIVNGARGSG-------- 206 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~---------~~~-~~Vl~~~-~~h~~~~~~~~~~g-------- 206 (488)
+...+++++|+++++.++++++++|++|+..+++.+. .++ +.|++.. .+|+.+..++..++
T Consensus 107 ~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 186 (433)
T 1z7d_A 107 VPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186 (433)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccC
Confidence 6779999999999998889999999999977776642 244 6666555 55666655555544
Q ss_pred ----CeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCC----ChHHHHHHHHHcCcEEEEEcc
Q 040324 207 ----ATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELC----KLPEIITICKRYKAYTYLDEA 278 (488)
Q Consensus 207 ----~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~----~l~~l~~l~~~~g~~li~DE~ 278 (488)
..+..++++|+++|+++++. .++++|+++++++++|.+. ++++|+++|++||++||+||+
T Consensus 187 ~p~~~~v~~~~~~d~~~le~~l~~------------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv 254 (433)
T 1z7d_A 187 GPFAPQFSKVPYDDLEALEEELKD------------PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEV 254 (433)
T ss_dssp -----CEEEECTTCHHHHHHHHTS------------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCCeEEeCCCCHHHHHHHhCC------------CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecC
Confidence 45677888999999998852 1467899999999999876 699999999999999999999
Q ss_pred ccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc---ccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHH
Q 040324 279 HSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY---GGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISA 354 (488)
Q Consensus 279 ~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~---Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~ 354 (488)
|+ ++|++|.+ ..+++++.| |++ ||||++|++ +|++++++++++.+....++.+++ +||+.+++++++
T Consensus 255 ~~--g~g~~g~~~~~~~~~~~~---di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~--~~~~~~aaa~aa 325 (433)
T 1z7d_A 255 QT--GLGRTGKLLCVHHYNVKP---DVI--LLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYG--GNPLAASICVEA 325 (433)
T ss_dssp TT--TTTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTT--TCHHHHHHHHHH
T ss_pred cc--CCCcCCcchhhHhcCCCC---CEE--EECccccCCCCCeEEEEECHHHHhhhccccccccCC--CCHHHHHHHHHH
Confidence 98 79999987 557788876 666 999999865 599999999988776554555555 899999999999
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC--CCeec--CCCCCCeEEEEeCCc-chHHHHHHHHHHCCceEEeec
Q 040324 355 IQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM--GFEVL--GDNDSPVMPIMVYNP-AKVSSFSRECLKQNVAIVTVG 429 (488)
Q Consensus 355 L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~ 429 (488)
|+.+. .+++.++++++++++++.|+++ +++.. ....+.++++.+... ....++++.|+++||.+.+.
T Consensus 326 l~~~~-------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~- 397 (433)
T 1z7d_A 326 LNVLI-------NEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV- 397 (433)
T ss_dssp HHHHH-------HTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE-
T ss_pred HHHHH-------hccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC-
Confidence 99873 2357888899999999999876 54321 123467888877643 34678999999999999853
Q ss_pred CCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCCc
Q 040324 430 FPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGIK 470 (488)
Q Consensus 430 ~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~~ 470 (488)
+.+++||+|++.+|++|+++++++|+++++++..|
T Consensus 398 ------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 432 (433)
T 1z7d_A 398 ------HDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDER 432 (433)
T ss_dssp ------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred ------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 24789999999999999999999999999887543
No 14
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=100.00 E-value=3.2e-40 Score=334.14 Aligned_cols=354 Identities=27% Similarity=0.471 Sum_probs=286.7
Q ss_pred CcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhh
Q 040324 98 NVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSI 177 (488)
Q Consensus 98 ~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~ 177 (488)
+|++++||++|+++++++ +|.+.+++.+++++++.+...++..++..+...++++.+|++++.++.+++++|++++..+
T Consensus 44 ~g~~~i~~~~~~~~~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~ 122 (401)
T 2bwn_A 44 GKQDITVWCGNDYLGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDAT 122 (401)
T ss_dssp CEEEEEECSCSCTTSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHH
T ss_pred CCCcEEEeeCCCcccCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHH
Confidence 489999999988888876 4789999999999876554444445567778899999999999998899999999988776
Q ss_pred hhccc--CCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCC
Q 040324 178 LPVLM--GKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE 255 (488)
Q Consensus 178 ~~~~~--~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~ 255 (488)
+..+. .+|+.|+++.++|+++..+++..|++++.++++|+++|++++++. .+.++.+|+++++++++|.
T Consensus 123 ~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~le~~l~~~---------~~~~~~~v~~~~~~nptG~ 193 (401)
T 2bwn_A 123 LSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAAD---------DPAAPKLIAFESVYSMDGD 193 (401)
T ss_dssp HHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTTCHHHHHHHHHHS---------CTTSCEEEEEESBCTTTCC
T ss_pred HHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhh---------ccCCceEEEEecCcCCCCC
Confidence 66543 588999999999999999999999999999999999999988752 1114557888999999999
Q ss_pred CCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcccEEEeCHHHHHHHHhhCC
Q 040324 256 LCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCP 335 (488)
Q Consensus 256 ~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~Gg~i~~~~~~~~~~~~~~~ 335 (488)
+.++++|+++|++||+++|+||+|+.|.+|++|.+.....++. ++.|++++||||++|.+|||+++++++++.+.....
T Consensus 194 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~-~~~~i~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~ 272 (401)
T 2bwn_A 194 FGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLM-HRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAP 272 (401)
T ss_dssp BCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCG-GGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCH
T ss_pred cCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCcc-ccCcEEEeechhhccCCCCEEecCHHHHHHHHHhCc
Confidence 9999999999999999999999999888888887755555653 235889999999999888999999999988876443
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCCcchHHHHH
Q 040324 336 AHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFS 415 (488)
Q Consensus 336 ~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (488)
.+.++++.++..++++.++++.+.. ...++++++++++.+++.+.|+++|+++..+ .++++++.+.......++.
T Consensus 273 ~~~~~~~~~~~~~~a~~~al~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 347 (401)
T 2bwn_A 273 GFIFSTSLPPAIAAGAQASIAFLKT----AEGQKLRDAQQMHAKVLKMRLKALGMPIIDH-GSHIVPVVIGDPVHTKAVS 347 (401)
T ss_dssp HHHTSBCCCHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-SSSCEEEECCCHHHHHHHH
T ss_pred CceecCCCCHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHHHHCCCcccCC-CCCeEEEEeCChHHHHHHH
Confidence 3344444677888888899988731 1236788999999999999999888877654 3567888776545567899
Q ss_pred HHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 416 RECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 416 ~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+.|+ ++||.+.+..++..+.+.+++|++++..+|++|+++++++|+++++++
T Consensus 348 ~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 348 DMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp HHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred HHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 9997 679999886655444455799999998899999999999999987654
No 15
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=3e-40 Score=340.46 Aligned_cols=354 Identities=13% Similarity=0.053 Sum_probs=270.5
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
++|..+.++.|.+++|.| |++||||+++. ...+||+||.+.+|+.+++++....+. ...+.
T Consensus 32 ~~p~~~~~~~G~~~~d~~---------------G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~---~~~~~ 93 (460)
T 3gju_A 32 SPTRIMAGGEGVTVWDNN---------------GRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHA---YVGHG 93 (460)
T ss_dssp SCCCCEEEEEBTEEEETT---------------CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCC---CTTCC
T ss_pred CCceEEEEeeccEEEECC---------------CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc---ccccC
Confidence 455889999999999999 99999998763 356778899999999999998754432 22356
Q ss_pred hhhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhhhhhccc---------CCCcEEEEeCCCchHHHHHHHhcCC------
Q 040324 145 LALHNELEECVARFVGK--PAAIVFGMGYVTNSSILPVLM---------GKGSLIISDSLNHNSIVNGARGSGA------ 207 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~~~~~~~---------~~~~~Vl~~~~~h~~~~~~~~~~g~------ 207 (488)
.+...+|+++|+++++. ++++++++|++|+..+++++. ++..+|..+..+|+.+..+..+.+.
T Consensus 94 ~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 173 (460)
T 3gju_A 94 TEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNA 173 (460)
T ss_dssp CHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTT
T ss_pred CHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccc
Confidence 67788999999999853 578899999999988877764 3344555566777777766665442
Q ss_pred ------eEEEee--C----CC------------HHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----h
Q 040324 208 ------TIRVFQ--H----NT------------PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----L 259 (488)
Q Consensus 208 ------~v~~~~--~----~d------------~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l 259 (488)
.+..++ . +| +++|++++++.. +.++++|++|++++++|.+.+ |
T Consensus 174 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~---------~~~~aaii~ep~~~~~G~~~~~~~~l 244 (460)
T 3gju_A 174 FDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG---------PETIAAFIGEPILGTGGIVPPPAGYW 244 (460)
T ss_dssp TTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC---------GGGEEEEEECSSBSTTTSBCCCTTHH
T ss_pred cCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC---------CCCEEEEEECCccCCCCCccCCHHHH
Confidence 233333 2 33 688888887521 236789999999999998776 9
Q ss_pred HHHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhh--
Q 040324 260 PEIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYN-- 333 (488)
Q Consensus 260 ~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~-- 333 (488)
++|+++|++||++||+||||+ +||++|.. ..+++++.| |++ ||||++++++ |++++++++++.+...
T Consensus 245 ~~l~~l~~~~~~llI~DEv~~--g~gr~g~~~~~~~~~~~p---di~--t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~ 317 (460)
T 3gju_A 245 EKIQAVLKKYDVLLVADEVVT--GFGRLGTMFGSDHYGIKP---DLI--TIAKGLTSAYAPLSGVIVADRVWQVLVQGSD 317 (460)
T ss_dssp HHHHHHHHHTTCEEEEECTTT--TTTTTSSSCHHHHHTCCC---SEE--EECGGGTTTSSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEecccc--CCCcccccchHhhcCCCC---Cee--eeehhhcCCCCCeEEEEECHHHHHHHhcccc
Confidence 999999999999999999999 89999865 678889887 666 8999998743 9999999999998632
Q ss_pred -----CCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh----CCCeecCCCCCCeEEEE
Q 040324 334 -----CPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQK----MGFEVLGDNDSPVMPIM 404 (488)
Q Consensus 334 -----~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~ 404 (488)
.+..+++ +||+++++++++|+.+. .+++.++++++.+++++.|.+ .+........+.++++.
T Consensus 318 ~~~~~~~~~t~~--~~~~~~aaa~aal~~~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~ 388 (460)
T 3gju_A 318 KLGSLGHGWTYS--AHPICVAAGVANLELID-------EMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVE 388 (460)
T ss_dssp HHCSCSCCCTTT--TCHHHHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEE
T ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEE
Confidence 3444444 99999999999999883 245677777777777777743 22211112235677776
Q ss_pred eCCcc-----------hHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 405 VYNPA-----------KVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 405 ~~~~~-----------~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
+.... ...++.+.|+++||++.+.+ ..+++||+|++.+|++|+++++++|+++++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 389 FVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP------QGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp ECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS------SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EccCccccccccchHHHHHHHHHHHHHCCeEEecCC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 65332 25688999999999998643 247999999999999999999999999998764
No 16
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=1e-40 Score=343.07 Aligned_cols=347 Identities=16% Similarity=0.172 Sum_probs=273.3
Q ss_pred CCCccCCCCceEEEe-eccccCCcccccccCCcc--eeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCC
Q 040324 68 GRPLSSAPDAWFDVV-ERYSNDNNKTLKRTNNVS--RCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGG 143 (488)
Q Consensus 68 ~~~i~~~~G~~~~~~-dr~~~~~~~~~~~~~~g~--~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g 143 (488)
|..+.+++|+++||. | |+ +||||+|+. ...+||+||.+.+|+.+++++....+ ...+
T Consensus 55 ~~~~~~~~G~~l~d~~d---------------G~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~----~~~~ 115 (457)
T 3tfu_A 55 PVVAVAAHGAWLTLIRD---------------GQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVM----FGGL 115 (457)
T ss_dssp CEEEEEEEBTEEEEEET---------------TEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC----SSSE
T ss_pred CceEEeeecCEEEEccC---------------CCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcc----cccc
Confidence 567889999999999 9 99 999997753 35677789999999999999864332 1123
Q ss_pred ChhhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhhhhhccc---------CCCcEEEEeCCCchHHHHHHHhcC------
Q 040324 144 TLALHNELEECVARFVGK--PAAIVFGMGYVTNSSILPVLM---------GKGSLIISDSLNHNSIVNGARGSG------ 206 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~~~~~~~---------~~~~~Vl~~~~~h~~~~~~~~~~g------ 206 (488)
..+...+|+++|+++++. ++++++++|++|+..+++.+. ++..+|..+..+|+.+..+....+
T Consensus 116 ~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 195 (457)
T 3tfu_A 116 THEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMH 195 (457)
T ss_dssp ECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCccccc
Confidence 567778999999999953 678999999999988777663 344566667778887776665532
Q ss_pred -------CeEEEeeC-------CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcC-cCCCCCCCCC----hHHHHHHHH
Q 040324 207 -------ATIRVFQH-------NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEG-IYSMEGELCK----LPEIITICK 267 (488)
Q Consensus 207 -------~~v~~~~~-------~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~-v~s~~G~~~~----l~~l~~l~~ 267 (488)
..+..++. +|+++|++.+++. +.++++|++|+ +++++|.+.+ +++|+++|+
T Consensus 196 ~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~----------~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 265 (457)
T 3tfu_A 196 SLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQH----------AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR 265 (457)
T ss_dssp ------CCCCEEECCCCSSCCHHHHHHHHHHHHHH----------GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH
T ss_pred ccccCCCCCceEecCCCcccCHHHHHHHHHHHHhC----------CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 12222332 4788999988753 12678999999 9999998876 999999999
Q ss_pred HcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc---ccEEEeCHHHHHHHHhh-----CCCCc
Q 040324 268 RYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY---GGYIAGSKELIQYLKYN-----CPAHL 338 (488)
Q Consensus 268 ~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~---Gg~i~~~~~~~~~~~~~-----~~~~~ 338 (488)
+||++||+||||+ +||++|.. ..+++++.| |++ ||||+++++ .|++++++++++.+... .++.+
T Consensus 266 ~~gillI~DEv~~--g~gr~G~~~a~~~~~~~p---dii--t~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t 338 (457)
T 3tfu_A 266 RYEVLLIFDEIAT--GFGRTGALFAADHAGVSP---DIM--CVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPT 338 (457)
T ss_dssp HHTCEEEEECTTT--TTTTTSSSSTHHHHTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCT
T ss_pred HcCCEEEEEcCcc--CCccccchhHhHhcCCCc---eEE--EEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecC
Confidence 9999999999999 89999987 678889887 677 999999763 39999999999999632 34444
Q ss_pred ccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC----CeecCCCCCCeEEEEeCCcchHHHH
Q 040324 339 YATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG----FEVLGDNDSPVMPIMVYNPAKVSSF 414 (488)
Q Consensus 339 ~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (488)
++ +||+++++++++|+.+. .+++.++++++.+++++.|+++. +..+ ...+.++++.+..+....++
T Consensus 339 ~~--~n~~a~aaa~aaL~~~~-------~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~l~~~~~~~~~ 408 (457)
T 3tfu_A 339 FM--ANPLACAVSVASVELLL-------GQDWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIECDRPVDLAVA 408 (457)
T ss_dssp TT--TCHHHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEEESSCCCHHHH
T ss_pred CC--cCHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEEECCcccHHHH
Confidence 44 99999999999999884 23578888999999999998762 2221 22467788888766567889
Q ss_pred HHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 415 SRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 415 ~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
++.|+++||++.+. .+++||+|++.+|++|+++++++|++++++++
T Consensus 409 ~~~l~~~Gv~v~~~--------~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 409 TPAALDRGVWLRPF--------RNLVYAMPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHHHHHTTEECCCB--------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCeEEEec--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999998842 26899999999999999999999999998764
No 17
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=3.6e-40 Score=338.86 Aligned_cols=354 Identities=16% Similarity=0.183 Sum_probs=271.4
Q ss_pred cccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccc-cccCCCCCCccchHHHHHHHHHcCCCCCCcccCCC
Q 040324 65 DCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSY-NYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGG 143 (488)
Q Consensus 65 ~~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~-~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g 143 (488)
..+|..+.+++|.++||.| |++||||+++ ....+||+||.+.+|+.+++++... ++ ...+
T Consensus 41 ~~~p~~~~~g~G~~v~d~~---------------g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~-~~---~~~~ 101 (451)
T 3oks_A 41 TTMPVYAVRAGGGIVEDVD---------------GNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTH-TC---FMVT 101 (451)
T ss_dssp CSCSSCEEEEETTEEEETT---------------SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSC-CT---TTTS
T ss_pred CCCCceEEEeecCEEEECC---------------CCEEEEcCCCccccccCCCCHHHHHHHHHHHHhccc-cc---CCcc
Confidence 3677888999999999999 9999999765 3467888899999999999988632 22 1225
Q ss_pred ChhhHHHHHHHHHHHhC---CCCeEEeCCcHHHHhhhhhcc---cCCCcEEEEeCCCchHHHHHHHhcCC----------
Q 040324 144 TLALHNELEECVARFVG---KPAAIVFGMGYVTNSSILPVL---MGKGSLIISDSLNHNSIVNGARGSGA---------- 207 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g---~~~~i~~~sGs~a~~~~~~~~---~~~~~~Vl~~~~~h~~~~~~~~~~g~---------- 207 (488)
..+...+|+++|+++++ .++++++++|++|+..+++.+ .++..+|..+..+|+.+..+..+++.
T Consensus 102 ~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~ 181 (451)
T 3oks_A 102 PYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGP 181 (451)
T ss_dssp CCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCS
T ss_pred CCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCC
Confidence 66777899999999986 257899999999998777655 35556666677788877776666442
Q ss_pred ---eEEEeeCC------------------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHH
Q 040324 208 ---TIRVFQHN------------------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEI 262 (488)
Q Consensus 208 ---~v~~~~~~------------------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l 262 (488)
.+..++.+ +++.+++.+++.+. +.++++|++|++++++|.+.+ +++|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~--------~~~~aavi~ep~~~~gG~~~~~~~~l~~l 253 (451)
T 3oks_A 182 FAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIG--------ADNLAAVVIEPIQGEGGFIVPADGFLPTL 253 (451)
T ss_dssp CCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTC--------GGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred CCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcC--------CCCEEEEEEcCCcCCCCccCCCHHHHHHH
Confidence 35555554 13334444543221 236889999999999999887 9999
Q ss_pred HHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc--ccEEEeCHHHHHHHHhhCCCCcc
Q 040324 263 ITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY--GGYIAGSKELIQYLKYNCPAHLY 339 (488)
Q Consensus 263 ~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~--Gg~i~~~~~~~~~~~~~~~~~~~ 339 (488)
+++|++||++||+||+|+ ++|++|.. ..+++++.| |++ ||||++|++ .|++++++++++.+....+..++
T Consensus 254 ~~l~~~~g~~lI~DEv~~--g~g~~g~~~~~~~~~~~p---di~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~ 326 (451)
T 3oks_A 254 LDWCRKNDVVFIADEVQT--GFARTGAMFACEHEGIDP---DLI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTY 326 (451)
T ss_dssp HHHHHHTTCEEEEECTTT--TTTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSS
T ss_pred HHHHHHcCCEEEEEeccc--CCCccccchhhhhcCCCC---Cee--eehhhhhCCcceEEEEECHHHHhhhcCCCcCCCC
Confidence 999999999999999999 89999876 678888877 666 999999762 29999999999888765555555
Q ss_pred cCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCC-------c
Q 040324 340 ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYN-------P 408 (488)
Q Consensus 340 ~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-------~ 408 (488)
+ +||+.+++++++|+.+. .+++.++++++.+++++.|+++ +........+.++++.+.. .
T Consensus 327 ~--~~~~~~aaa~aal~~~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 397 (451)
T 3oks_A 327 G--GNPIACAAALATIETIE-------SEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDA 397 (451)
T ss_dssp S--SCHHHHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCH
T ss_pred C--CCHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCH
Confidence 5 99999999999999873 2457778888888888888764 2222222335677777732 3
Q ss_pred chHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 409 AKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 409 ~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
....++.+.|+++||++.+.+. ..+++||+|++.+|++++++++++|++++++
T Consensus 398 ~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 398 DLTKALCAGAHAAGVIVLSCGT-----YGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp HHHHHHHHHHHHTTEECEEECT-----TSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCcEEecCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 3466899999999999987431 1368999999999999999999999998763
No 18
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=3.5e-40 Score=339.05 Aligned_cols=355 Identities=17% Similarity=0.173 Sum_probs=272.5
Q ss_pred cccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCC
Q 040324 65 DCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGG 143 (488)
Q Consensus 65 ~~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g 143 (488)
..+|..+.+++|.++||.| |++||||+++. ...+||+||.+.+|+.+++++... ++ ...+
T Consensus 44 ~~~p~~~~~~~G~~v~d~~---------------G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~-~~---~~~~ 104 (453)
T 4ffc_A 44 STAPVYAVDADGGVIVDAD---------------GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH-TC---FMVT 104 (453)
T ss_dssp CSCSSCEEEEETTEEEETT---------------SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC-CT---TTTS
T ss_pred CCCCceEEeeecCEEEeCC---------------CCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc-cc---cCcC
Confidence 3677888999999999999 99999997653 356788899999999999998632 22 1225
Q ss_pred ChhhHHHHHHHHHHHhC---CCCeEEeCCcHHHHhhhhhcc---cCCCcEEEEeCCCchHHHHHHHhcCC----------
Q 040324 144 TLALHNELEECVARFVG---KPAAIVFGMGYVTNSSILPVL---MGKGSLIISDSLNHNSIVNGARGSGA---------- 207 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g---~~~~i~~~sGs~a~~~~~~~~---~~~~~~Vl~~~~~h~~~~~~~~~~g~---------- 207 (488)
..+...+|+++|+++++ .++++++++|++|+..+++.+ .++..+|..+..+|+.+..+..+++.
T Consensus 105 ~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 184 (453)
T 4ffc_A 105 PYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGP 184 (453)
T ss_dssp CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS
T ss_pred CCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCC
Confidence 67778899999999986 357899999999998777655 35566677777888888777666543
Q ss_pred ---eEEEeeCC----C------HHHHHHH---HHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHH
Q 040324 208 ---TIRVFQHN----T------PSHLEEV---LREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICK 267 (488)
Q Consensus 208 ---~v~~~~~~----d------~~~Le~~---l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~ 267 (488)
.+..++.+ | .+.++.. +++.+. +.++++|++|++++++|.+.+ +++|+++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--------~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~ 256 (453)
T 4ffc_A 185 FAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--------AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWAS 256 (453)
T ss_dssp CCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--------GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred CCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--------CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 34445543 3 2444433 222211 236889999999999998876 999999999
Q ss_pred HcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCC
Q 040324 268 RYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSI 343 (488)
Q Consensus 268 ~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~ 343 (488)
+||++||+||+|+ +||++|.. ..+++++.| |++ ||||++++ | |++++++++++.+....+..+++ +
T Consensus 257 ~~~~llI~DEv~~--g~g~~g~~~a~~~~~~~p---di~--t~sK~~~~-G~~~G~~~~~~~i~~~~~~~~~~~t~~--~ 326 (453)
T 4ffc_A 257 ENGVVFIADEVQT--GFARTGAWFASEHEGIVP---DIV--TMAKGIAG-GMPLSAVTGRAELMDAVYAGGLGGTYG--G 326 (453)
T ss_dssp HHTCEEEEECTTT--TTTTTSSSSTHHHHTCCC---SEE--EECGGGGT-TSSCEEEEEEHHHHTTSCTTSSCCSSS--S
T ss_pred HcCCEEEEecCcc--CCCcccccchhhhcCCCc---chH--hhhhhhcC-CcCeEEEEECHHHHhhhcccCcCCCCC--c
Confidence 9999999999999 89999876 678889877 666 89999976 4 99999999998887665655555 9
Q ss_pred CHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCC-------cchHH
Q 040324 344 SPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYN-------PAKVS 412 (488)
Q Consensus 344 ~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-------~~~~~ 412 (488)
||+++++++++|+.+. .+++.++++++.+++++.|+++ +........+.++++.+.. .....
T Consensus 327 ~~~~~aaa~aal~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 399 (453)
T 4ffc_A 327 NPVTCAAAVAALGVMR-------ELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTK 399 (453)
T ss_dssp CHHHHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHH
T ss_pred CHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHH
Confidence 9999999999999873 2457777888888888887764 2221112335677777732 23466
Q ss_pred HHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 413 SFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 413 ~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
++.+.|+++||++.+.+. ..+++||+|++.+|++|+++++++|+++++++.
T Consensus 400 ~~~~~l~~~Gv~v~~~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 400 SIAAEALSQGVLILTCGT-----FGNVIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp HHHHHHHHTTEECCEECT-----TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCEEecCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999986431 136899999999999999999999999998764
No 19
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=9.8e-40 Score=336.47 Aligned_cols=352 Identities=15% Similarity=0.127 Sum_probs=266.4
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
..|..+.++.|.+++|.| |++||||+|+. ...+||+||.+.+|+.+++++...+++. ..+.
T Consensus 31 ~~p~~~~~~~G~~~~d~~---------------g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~---~~~~ 92 (459)
T 4a6r_A 31 AGARVMTRGEGVYLWDSE---------------GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTF---FKTT 92 (459)
T ss_dssp ---CCEEEEEBTEEEETT---------------CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTT---SSSC
T ss_pred cCCeeEEEeecCEEEECC---------------CCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccc---cccC
Confidence 457789999999999999 99999997763 3567778999999999999987543332 2246
Q ss_pred hhhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhhhhhcccC--------CCcEEE-EeCCCchHHHHHHHhcCC------
Q 040324 145 LALHNELEECVARFVGK--PAAIVFGMGYVTNSSILPVLMG--------KGSLII-SDSLNHNSIVNGARGSGA------ 207 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~~~~~~~~--------~~~~Vl-~~~~~h~~~~~~~~~~g~------ 207 (488)
.+...++++.++++++. ++++++++|++|+..+++.+.. +++.|+ .+..+|+.+..+....+.
T Consensus 93 ~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 172 (459)
T 4a6r_A 93 HPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQ 172 (459)
T ss_dssp CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC--
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccc
Confidence 77889999999999854 5788889999999888777653 344554 556666666655555432
Q ss_pred ------eEEEee--C----C---C--------HHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hH
Q 040324 208 ------TIRVFQ--H----N---T--------PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LP 260 (488)
Q Consensus 208 ------~v~~~~--~----~---d--------~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~ 260 (488)
.+..++ . + | +++|++++.+.. +.++++|+++++++++|.+.+ |+
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~---------~~~~~~vi~ep~~~~~G~~~~~~~~l~ 243 (459)
T 4a6r_A 173 GDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIG---------ADKVAAFVGEPIQGAGGVIVPPATYWP 243 (459)
T ss_dssp -CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHC---------GGGEEEEEECSSBTTTTCBCCCTTHHH
T ss_pred cCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcC---------CCCEEEEEECCccCCCCcccCCHHHHH
Confidence 223333 2 2 2 778888887521 236789999999999999887 99
Q ss_pred HHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhh---
Q 040324 261 EIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYN--- 333 (488)
Q Consensus 261 ~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~--- 333 (488)
+|+++|++||++||+||||+ +||++|.. ..+++++.| |++ ||||+++++| |++++++++++.+...
T Consensus 244 ~l~~l~~~~~~llI~DEv~~--g~gr~G~~~~~~~~~~~p---di~--t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~ 316 (459)
T 4a6r_A 244 EIERICRKYDVLLVADEVIC--GFGRTGEWFGHQHFGFQP---DLF--TAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDF 316 (459)
T ss_dssp HHHHHHHHTTCEEEEECTTT--TTTTTSSSSHHHHHTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCEEEEecccc--CCCcccccchHhhcCCCC---Cee--ehhhhhcCCCCCccceeeCHHHHHHhhcCCCc
Confidence 99999999999999999999 89999965 678889887 666 8999998755 9999999999998732
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHH-HHHHHHHHHH-HhC---CCeecCCCCCCeEEEEeCCc
Q 040324 334 CPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIR-ENSNFFRSKL-QKM---GFEVLGDNDSPVMPIMVYNP 408 (488)
Q Consensus 334 ~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~L-~~~---g~~~~~~~~~~~~~~~~~~~ 408 (488)
.++.+++ +||+++++++++|+.+. .+++.++++ ++.+++++.| +.+ +........+.++++.+...
T Consensus 317 ~~~~t~~--~~~~~~aaa~aal~~~~-------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~ 387 (459)
T 4a6r_A 317 NHGFTYS--GHPVCAAVAHANVAALR-------DEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKN 387 (459)
T ss_dssp HHHHHHC--SCHHHHHHHHHHHHHHH-------HTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSB
T ss_pred ccCCCCC--CCHHHHHHHHHHHHHHh-------cchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecC
Confidence 2333444 99999999999999873 245677777 7778887777 443 21111122356666666432
Q ss_pred c-----------hHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 409 A-----------KVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 409 ~-----------~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
. ...++++.|+++||++.+.+ +++||+|++.+|++|+++++++|+++++++.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 388 KAKRELFPDFGEIGTLCRDIFFRNNLIMRACG--------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp TTTTBCCSSTTHHHHHHHHHHHHTTEECEEET--------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHCCeEEecCC--------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 15689999999999998632 6899999999999999999999999988764
No 20
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2.9e-39 Score=326.50 Aligned_cols=345 Identities=14% Similarity=0.155 Sum_probs=270.3
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.++.|.+++|.| |++||||+++.+ ..+||+||.+.+|+.+++++....+. .+.
T Consensus 17 ~~~~~~~~~~G~~~~d~~---------------g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~ 76 (395)
T 3nx3_A 17 RFDIVLEKGQGVYLFDDK---------------AKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN-----LYY 76 (395)
T ss_dssp SCSCBEEEEEBTEEEETT---------------CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT-----TSB
T ss_pred CCCceEEeeeeeEEEECC---------------CCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc-----ccC
Confidence 567788899999999998 999999987643 45677789999999999988644331 135
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhccc-------CCCcEEEE-eCCCchHHHHHHHhcC----------
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLM-------GKGSLIIS-DSLNHNSIVNGARGSG---------- 206 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~-------~~~~~Vl~-~~~~h~~~~~~~~~~g---------- 206 (488)
.+...++++.++++++.++++++++|++|+..+++.+. .+++.|++ +..+|+.+..+....+
T Consensus 77 ~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 156 (395)
T 3nx3_A 77 NENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKP 156 (395)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCS
T ss_pred CHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCC
Confidence 67789999999999998889999999999977776653 23455555 4555565555544433
Q ss_pred --CeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEcccc
Q 040324 207 --ATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDEAHS 280 (488)
Q Consensus 207 --~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE~~s 280 (488)
..+..++++|+++|++++++ ++++|+++++++++|.+.+ +++|+++|++||++||+||+|+
T Consensus 157 ~~~~~~~~~~~d~~~l~~~l~~-------------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~ 223 (395)
T 3nx3_A 157 LISGVKFAKYNDISSVEKLVNE-------------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC 223 (395)
T ss_dssp CCSCEEEECTTCHHHHHTTCCT-------------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred CCCCcEEeCCCCHHHHHHhccC-------------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 46778889999999988753 5678889999999999887 9999999999999999999999
Q ss_pred ccccCCCCCC-cchhcCCCCCCccEEEcccccccCC--cccEEEeCHHH-HHHHHhhCCCCcccCCCCHHHHHHHHHHHH
Q 040324 281 IGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGS--YGGYIAGSKEL-IQYLKYNCPAHLYATSISPPAAEQIISAIQ 356 (488)
Q Consensus 281 ~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~--~Gg~i~~~~~~-~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~ 356 (488)
+||++|.. ..+.+++.| |++ ||||++++ +.|++++++++ ++.+....+..+++ .+|+.++++.++|+
T Consensus 224 --~~g~~g~~~~~~~~~~~~---d~~--t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~aa~aal~ 294 (395)
T 3nx3_A 224 --GMGRSGKFFAYEHAQILP---DIM--TSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYG--GNPLVCAGVNAVFE 294 (395)
T ss_dssp --TTTTTSSSSGGGGGTCCC---SEE--EECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBS--CCHHHHHHHHHHHH
T ss_pred --CCCcCCcchhHHhcCCCC---CEE--EecccccCCCceEEEEEchhhhhhhcCCcccCCCCC--CCHHHHHHHHHHHH
Confidence 88888875 567778766 666 89999975 22999999998 88876655554555 89999999999999
Q ss_pred HHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCC
Q 040324 357 VVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPA 432 (488)
Q Consensus 357 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~ 432 (488)
.+. .+++.++++++.+++++.|+++ +........+.++++.+.......++.+.|+++||.+.+.+
T Consensus 295 ~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--- 364 (395)
T 3nx3_A 295 IFK-------EEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQENALLLISCG--- 364 (395)
T ss_dssp HHH-------HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEET---
T ss_pred HHH-------hhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCC---
Confidence 873 2456677777777777777653 22211123467788877665567889999999999998632
Q ss_pred ccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 433 TPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 433 ~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
.+++||+|++.+|++|+++++++|++++++
T Consensus 365 ----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 365 ----ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp ----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999998864
No 21
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=4.9e-39 Score=330.72 Aligned_cols=353 Identities=14% Similarity=0.138 Sum_probs=267.0
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccc-cccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSY-NYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~-~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.+++|.+++|.| |++||||+++ ....+||+||++.+|+.+++++... + ...+.
T Consensus 30 ~~p~~~~~~~G~~v~d~~---------------g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~----~~~~~ 89 (452)
T 3n5m_A 30 NSTTVGAKAEGCWVEDIQ---------------GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY-F----PMSQS 89 (452)
T ss_dssp GGCCEEEEEEBTEEEETT---------------CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC-C----CTTSE
T ss_pred CCCceEEEeeeCEEEECC---------------CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC-c----ccccC
Confidence 467788999999999999 9999999776 2345667789999999999988644 2 12246
Q ss_pred hhhHHHHHHHHHHHhCCC-CeEEeCCcHHHHhhhhhccc-----C---CCcEEEE-eCCCchHHHHHHHhcCCe------
Q 040324 145 LALHNELEECVARFVGKP-AAIVFGMGYVTNSSILPVLM-----G---KGSLIIS-DSLNHNSIVNGARGSGAT------ 208 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~-~~i~~~sGs~a~~~~~~~~~-----~---~~~~Vl~-~~~~h~~~~~~~~~~g~~------ 208 (488)
.+...++++.++++++.+ +++++++|++|+..+++.+. . +++.|++ +..+|+.+..+....+..
T Consensus 90 ~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 169 (452)
T 3n5m_A 90 HEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQY 169 (452)
T ss_dssp EHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTT
T ss_pred CHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhcccc
Confidence 678899999999998753 38888899999988877765 3 4455554 555666666555554321
Q ss_pred ------EEEee--------CCC---------HHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCc-CCCCCCCCC----hH
Q 040324 209 ------IRVFQ--------HNT---------PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGI-YSMEGELCK----LP 260 (488)
Q Consensus 209 ------v~~~~--------~~d---------~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v-~s~~G~~~~----l~ 260 (488)
+..++ +|| +++|++.+++.. +.++++|+++++ ++ +|.+.+ ++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~---------~~~~~~vi~ep~~~n-~G~~~~~~~~l~ 239 (452)
T 3n5m_A 170 EPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL---------SETIAAFIMEPIITG-GGILMAPQDYMK 239 (452)
T ss_dssp CCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC---------GGGEEEEEECSSBTT-TTCBCCCTTHHH
T ss_pred CCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC---------CCCEEEEEEccccCC-CCeeeCCHHHHH
Confidence 22332 244 899999887310 126788999999 89 998886 99
Q ss_pred HHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc----cEEEeCHHHHHHHHh---
Q 040324 261 EIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG----GYIAGSKELIQYLKY--- 332 (488)
Q Consensus 261 ~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G----g~i~~~~~~~~~~~~--- 332 (488)
+|+++|++||++||+||||+ +||++|.. ..+++++.| |++ ||||++++ | |++++++++++.+..
T Consensus 240 ~l~~l~~~~~~llI~DEv~~--g~g~~g~~~~~~~~~~~~---di~--t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~ 311 (452)
T 3n5m_A 240 AVHETCQKHGALLISDEVIC--GFGRTGKAFGFMNYDVKP---DII--TMAKGITS-AYLPLSATAVKREIYEAFKGKGE 311 (452)
T ss_dssp HHHHHHHHHTCEEEEECTTT--TTTTTSSSSGGGGTTCCC---SEE--EECGGGGT-TSSCCEEEEEEHHHHGGGCSSST
T ss_pred HHHHHHHHcCCEEEEecchh--CCCcccccchhhhcCCCC---CEE--eecccccC-CCcceEEEEECHHHHHHHhhccC
Confidence 99999999999999999999 89999876 678888877 666 89999976 4 999999999988843
Q ss_pred -h--CCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC--CCe--ecCCCCCCeEEEEe
Q 040324 333 -N--CPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM--GFE--VLGDNDSPVMPIMV 405 (488)
Q Consensus 333 -~--~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~--~~~~~~~~~~~~~~ 405 (488)
. .++.++ +++|+++++++++|+.+. .+++.++++++.+++++.|+++ .++ ......+.++++.+
T Consensus 312 ~~~~~~~~t~--~~~~~~~aaa~aal~~~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~ 382 (452)
T 3n5m_A 312 YEFFRHINTF--GGNPAACALALKNLEIIE-------NENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIEL 382 (452)
T ss_dssp TCSCCCCCSS--TTCHHHHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEE
T ss_pred CCCccccCCC--CCCHHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEE
Confidence 1 133344 489999999999999873 3457788888888888888764 221 11123355666655
Q ss_pred CCc---------chHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 406 YNP---------AKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 406 ~~~---------~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
... ....++++.|+++||++.+.+++ .+...+++||+|++.+|++|+++++++|++++++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 383 VNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMT-TAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp EEETTTTEECCHHHHHHHHHHHHHTTEECEECTTS-STTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred ecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcc-cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 221 12457899999999999986644 3444689999999999999999999999998764
No 22
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=3.3e-39 Score=331.60 Aligned_cols=348 Identities=13% Similarity=0.074 Sum_probs=257.6
Q ss_pred cCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCCh
Q 040324 67 FGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL 145 (488)
Q Consensus 67 ~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~ 145 (488)
.|..+.+++|.+++|.| |++||||+++. ...+||+||.+.+|+.+++++....+ ...+..
T Consensus 26 ~p~~~~~g~G~~v~d~~---------------g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~----~~~~~~ 86 (448)
T 3dod_A 26 NPLIIESGTGIKVKDIN---------------GKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHST----LLGMTN 86 (448)
T ss_dssp SCCEEEEEEBTEEEETT---------------SCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCC----CSSSEE
T ss_pred CCceEEEeeeCEEEECC---------------CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcc----ccccCC
Confidence 46778899999999999 99999997653 35677779999999999998863322 123566
Q ss_pred hhHHHHHHHHHHHhC--CCCeEEeCCcHHHHhhhhhcccC----C----CcEEEEeC-CCchHHHHHHHhcCCe------
Q 040324 146 ALHNELEECVARFVG--KPAAIVFGMGYVTNSSILPVLMG----K----GSLIISDS-LNHNSIVNGARGSGAT------ 208 (488)
Q Consensus 146 ~~~~~l~~~la~~~g--~~~~i~~~sGs~a~~~~~~~~~~----~----~~~Vl~~~-~~h~~~~~~~~~~g~~------ 208 (488)
+...++++.++++++ .++++++++|++|+..+++++.. + ++.|++.. .+|+.+..+...++..
T Consensus 87 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 166 (448)
T 3dod_A 87 VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVY 166 (448)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccc
Confidence 778899999999985 36789999999999887777643 2 35665555 4556555544444321
Q ss_pred ------EEEeeCC----------------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcC-CCCCCCCC----hHH
Q 040324 209 ------IRVFQHN----------------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY-SMEGELCK----LPE 261 (488)
Q Consensus 209 ------v~~~~~~----------------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~-s~~G~~~~----l~~ 261 (488)
+..++.+ |+++|++++++. +.++++|++|+++ +++|.+.+ +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~----------~~~~a~vi~ep~~~~~~G~~~~~~~~l~~ 236 (448)
T 3dod_A 167 GPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEH----------HEEIAALSIESMVQGASGMIVMPEGYLAG 236 (448)
T ss_dssp ------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHH----------GGGEEEEEEESSEESTTTCEECCTTHHHH
T ss_pred cCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhC----------CCCEEEEEEeCcccCCCCeecCCHHHHHH
Confidence 2223333 378899888732 1267899999999 99998776 999
Q ss_pred HHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc---ccEEEeCHHHHHHHHh-----
Q 040324 262 IITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY---GGYIAGSKELIQYLKY----- 332 (488)
Q Consensus 262 l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~---Gg~i~~~~~~~~~~~~----- 332 (488)
|+++|++||++||+||+|+ +||++|.. ..+++++.| |++ ||||+++++ .|++++++++++.+..
T Consensus 237 l~~l~~~~~~~lI~DEv~~--g~g~~g~~~a~~~~~~~~---di~--t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~ 309 (448)
T 3dod_A 237 VRELCTTYDVLMIVDEVAT--GFGRTGKMFACEHENVQP---DLM--AAGKGITGGYLPIAVTFATEDIYKAFYDDYENL 309 (448)
T ss_dssp HHHHHHHTTCEEEEECTTT--TTTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGC
T ss_pred HHHHHHHhCCEEEEecccc--CCCcccchhhhhhcCCCC---CEE--EecccccCCcCceEEEEECHHHHHHhhhccccC
Confidence 9999999999999999999 89999877 678889887 666 899999753 2899999999998865
Q ss_pred --hCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC---CCeecCCCCCCeEEEEeCC
Q 040324 333 --NCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM---GFEVLGDNDSPVMPIMVYN 407 (488)
Q Consensus 333 --~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~ 407 (488)
..++.+++ ++|+.+++++++|+.+. .+++.++++++.+++++.|+++ +........+.++++.+..
T Consensus 310 ~~~~~~~t~~--~~~~~~aaa~aal~~~~-------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 380 (448)
T 3dod_A 310 KTFFHGHSYT--GNQLGCAVALENLALFE-------SENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVR 380 (448)
T ss_dssp CCCCCCCTTT--TCHHHHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECS
T ss_pred CcccccCCCC--cCHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEcc
Confidence 33444444 89999999999999873 2457778888888888888763 2211112235677777754
Q ss_pred cch-----------HHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 408 PAK-----------VSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 408 ~~~-----------~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
... ..++++.|+++||.+.+. .+++||+|++.+|++|+++++++|+++++++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 381 SKETKEPYPADRRIGYKVSLKMRELGMLTRPL--------GDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp BTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE--------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccchhhHHHHHHHHHHHHCCcEEecc--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 321 468999999999999853 2789999999999999999999999999876
No 23
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=1.7e-38 Score=324.65 Aligned_cols=357 Identities=13% Similarity=0.088 Sum_probs=256.3
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
..|..+.++.|.+++|.| |++||||+++. ...+||+||.+.+|+.+++++....+. ..+.
T Consensus 10 ~~~~~~~~~~G~~~~d~~---------------g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~----~~~~ 70 (430)
T 3i4j_A 10 KPYPVAVRGEGVFLYDDA---------------GRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHG----SQFS 70 (430)
T ss_dssp SCCCEEEEEEBTEEEETT---------------SCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT----TTCE
T ss_pred CCCceEEeeecCEEEECC---------------CCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccc----cccC
Confidence 456788899999999998 99999997752 245666689999999999988643221 1246
Q ss_pred hhhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhhhhhccc--------CCCcEEEEeCCCc-hHHHHHHHhcCC------
Q 040324 145 LALHNELEECVARFVGK--PAAIVFGMGYVTNSSILPVLM--------GKGSLIISDSLNH-NSIVNGARGSGA------ 207 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~~~~~~~--------~~~~~Vl~~~~~h-~~~~~~~~~~g~------ 207 (488)
.+...++++.++++++. ++++++++|++++..+++.+. .+++.|++..+.| +.+.......+.
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 150 (430)
T 3i4j_A 71 SDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARREL 150 (430)
T ss_dssp EHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC--------------------
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccc
Confidence 67889999999999964 568888889999988777764 3355666655554 444333333321
Q ss_pred --------eEEEeeCC--------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCC-CCCCCCC----hHHHHHHH
Q 040324 208 --------TIRVFQHN--------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYS-MEGELCK----LPEIITIC 266 (488)
Q Consensus 208 --------~v~~~~~~--------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s-~~G~~~~----l~~l~~l~ 266 (488)
.+..++++ |+++|++.+++.. +.++++|+++++++ ++|.+.+ +++|+++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~---------~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~ 221 (430)
T 3i4j_A 151 YTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREG---------PETVAAFMAEPVVGASDAALAPAPGYYERVRDIC 221 (430)
T ss_dssp -----CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHC---------GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHH
T ss_pred cCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcC---------CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHH
Confidence 33344444 4488999887531 13678999999999 9998877 99999999
Q ss_pred HHcCcEEEEEccccccccCCCCCC-cchhc-CCCCCCccEEEcccccccCCc---ccEEEeCHHHHHHHHhh----CCCC
Q 040324 267 KRYKAYTYLDEAHSIGAVGKTGRG-VCELL-GVDTSDVDIMMGTFSKSFGSY---GGYIAGSKELIQYLKYN----CPAH 337 (488)
Q Consensus 267 ~~~g~~li~DE~~s~g~~g~~g~~-~~~~~-~v~p~~~di~~~t~sK~~g~~---Gg~i~~~~~~~~~~~~~----~~~~ 337 (488)
++||++||+||+|+ +||++|.. ..+++ ++.| |++ ||||+++++ .||+++++++++.+... .+..
T Consensus 222 ~~~~~~li~DEv~~--~~~~~g~~~~~~~~~~~~~---di~--t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~ 294 (430)
T 3i4j_A 222 DEAGIIFIADEVMS--GMGRCGSPLALSRWSGVTP---DIA--VLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGF 294 (430)
T ss_dssp HHHTCEEEEECTTT--TTTTTSSSSGGGGTTTCCC---SEE--EECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCC
T ss_pred HHcCCEEEEechhh--CCCcccchhhhhhhcCCCC---cEE--EEcccccCCccccEEEEECHHHHHHHhccCCcccccC
Confidence 99999999999999 88888875 56777 8776 666 899999862 18999999999999864 3444
Q ss_pred cccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-----CCeecCCCCCCeEEEEeCC-----
Q 040324 338 LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-----GFEVLGDNDSPVMPIMVYN----- 407 (488)
Q Consensus 338 ~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~----- 407 (488)
+++ .+|+++++++++|+.+. .+++.++++++.+++++.|+++ ++... ...+.++++.+.+
T Consensus 295 t~~--~~~~~~aaa~aal~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 364 (430)
T 3i4j_A 295 TYA--GHPVSVAAGLSVLDIVE-------REDLTGAAKERGAQLLAGLQALQARFPQMMQV-RGTGLLLGVVLGDLATGQ 364 (430)
T ss_dssp TTT--TCHHHHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEC------
T ss_pred CCC--CCHHHHHHHHHHHHHHH-------cccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEeccccccC
Confidence 444 89999999999999873 2456777778888888777664 22222 2235677776642
Q ss_pred ----cchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 408 ----PAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 408 ----~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+....++.+.|+++||++.+..++..+.+.+++||++++.+|++++++++++|+++++++
T Consensus 365 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 365 AFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 122367999999999999875445545556899999999999999999999999998865
No 24
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=8e-39 Score=327.38 Aligned_cols=345 Identities=15% Similarity=0.141 Sum_probs=262.3
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.++.|.++||.| |++||||+++.+ ..+||+||.+.+|+.+++++.. .+ .+.
T Consensus 36 ~~p~~~~~~~G~~~~d~~---------------g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~------~~~ 93 (434)
T 3l44_A 36 GAPIAMERGKGAYFWDVD---------------GNKYIDYLAAYGPIITGHAHPHITKAITTAAENGV-LY------GTP 93 (434)
T ss_dssp SCCCCEEEEEBTEEEETT---------------CCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCS-CC------SSC
T ss_pred CCCceEEEeecCEEEECC---------------CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc-CC------CCC
Confidence 567889999999999999 999999977643 6778889999999999998841 11 134
Q ss_pred hhhHHHHHHHHHHHhC-CCCeEEeCCcHHHHhhhhhcccC--CCcEEEE-eCCCchHHHHHHHhcC--------------
Q 040324 145 LALHNELEECVARFVG-KPAAIVFGMGYVTNSSILPVLMG--KGSLIIS-DSLNHNSIVNGARGSG-------------- 206 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g-~~~~i~~~sGs~a~~~~~~~~~~--~~~~Vl~-~~~~h~~~~~~~~~~g-------------- 206 (488)
.+...+|+++++++++ .++++++++|++|+..+++.+.. +++.|++ +..+|+.+.......+
T Consensus 94 ~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~ 173 (434)
T 3l44_A 94 TALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGV 173 (434)
T ss_dssp CHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTC
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCC
Confidence 6677899999999985 46788889999999887776543 4455555 4555554443322222
Q ss_pred -----CeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEc
Q 040324 207 -----ATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDE 277 (488)
Q Consensus 207 -----~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE 277 (488)
..+..++++|+++|++++++.. .++++|+++++++++|.+.+ +++|+++|++||++||+||
T Consensus 174 ~~~~~~~~~~~~~~d~~~le~~l~~~~----------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DE 243 (434)
T 3l44_A 174 PQSIAQEVITVPFNNVETLKEALDKWG----------HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDE 243 (434)
T ss_dssp CHHHHTTEEEECTTCHHHHHHHHHHHG----------GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEEC
T ss_pred CCcCCCceEecCcccHHHHHHHHHhCC----------CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 2567788899999999998631 26789999999999999887 9999999999999999999
Q ss_pred cccccccCCCCCC-cchhcCCCCCCccEEEcccccccCC--cccEEEeCHHHHHHHHhh---CCCCcccCCCCHHHHHHH
Q 040324 278 AHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGS--YGGYIAGSKELIQYLKYN---CPAHLYATSISPPAAEQI 351 (488)
Q Consensus 278 ~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~--~Gg~i~~~~~~~~~~~~~---~~~~~~~~~~~p~~~aa~ 351 (488)
||+ +| ++|.. ..+++++.| |++ ||||++|+ +.|++++++++++.+... .+..++ +.+|++++++
T Consensus 244 v~~--g~-~~g~~~~~~~~~~~~---di~--t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~--~~~~~a~aaa 313 (434)
T 3l44_A 244 VIT--AF-RFMYGGAQDLLGVTP---DLT--ALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTM--AGNPASMASG 313 (434)
T ss_dssp TTT--TT-TSSSSCHHHHHTCCC---SEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTT--TTCHHHHHHH
T ss_pred ccc--ce-eccccHHHHHcCCCC---Cee--ehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCC--CcCHHHHHHH
Confidence 999 78 88875 578889887 665 89999974 129999999999887652 233344 4999999999
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCC-------------cchHHHH
Q 040324 352 ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYN-------------PAKVSSF 414 (488)
Q Consensus 352 ~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 414 (488)
+++|+.+. .+++.++++++.+++++.|+++ ++.......+.++++.+.. .....++
T Consensus 314 ~aal~~~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (434)
T 3l44_A 314 IACLEVLQ-------QEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKF 386 (434)
T ss_dssp HHHHHHHT-------STTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHH
T ss_pred HHHHHHHH-------cccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHH
Confidence 99999873 2457777888888888888764 4322222345677776632 2234678
Q ss_pred HHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 415 SRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 415 ~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
.+.|+++||.+.+.+ .+.+|+ ++.+|++|+++++++|+++++++.
T Consensus 387 ~~~l~~~Gv~v~~~~-------~~~~rl--~~~~t~e~i~~~l~~l~~~l~~~~ 431 (434)
T 3l44_A 387 FKLMLQEGVNLAPSK-------YEAWFL--TTEHTKEDIEYTIEAVGRAFAALA 431 (434)
T ss_dssp HHHHHHTTEECCSST-------TCCEEC--CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEeecC-------CCcEEE--ecccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999988532 246787 468999999999999999998763
No 25
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=1e-38 Score=327.00 Aligned_cols=352 Identities=14% Similarity=0.100 Sum_probs=274.1
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.++.|.+++|.| |++||||+++.+ ..+||+||.+.+++.++++++. +++ ...+.
T Consensus 24 ~~~~~~~~~~G~~v~d~~---------------g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~ 84 (439)
T 3dxv_A 24 FFPLAISGGRGARLIEEN---------------GRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPA-GAT---ILSAS 84 (439)
T ss_dssp SSCCEEEEEEBTEEEETT---------------SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCS-CSC---SSSSE
T ss_pred CCCceEEEeeeCEEEeCC---------------CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc-Ccc---ccccC
Confidence 467788999999999998 999999987755 4566678999999999998863 222 23357
Q ss_pred hhhHHHHHHHHHHHh--CC-CCeEEeCCcHHHHhhhhhc---ccCCCcEEEEeCCCchHHHHHHHhcCCeE---------
Q 040324 145 LALHNELEECVARFV--GK-PAAIVFGMGYVTNSSILPV---LMGKGSLIISDSLNHNSIVNGARGSGATI--------- 209 (488)
Q Consensus 145 ~~~~~~l~~~la~~~--g~-~~~i~~~sGs~a~~~~~~~---~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v--------- 209 (488)
.+...++++.+++++ +. ++++++++|++|+..+++. +.+++++|+++..+|+.+..+..+++...
T Consensus 85 ~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 164 (439)
T 3dxv_A 85 NAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADG 164 (439)
T ss_dssp EHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------C
T ss_pred CHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCC
Confidence 788899999999999 44 5789999999999877776 45777788888888898887776665432
Q ss_pred -----EEeeCC----------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcC
Q 040324 210 -----RVFQHN----------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYK 270 (488)
Q Consensus 210 -----~~~~~~----------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g 270 (488)
..++++ |+++|++++++. .+.++++|+++++++++|.+.+ +++|+++|++||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---------~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 235 (439)
T 3dxv_A 165 LILLPYPDPYRPYRNDPTGDAILTLLTEKLAAV---------PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHG 235 (439)
T ss_dssp EEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTS---------CTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred CCCCcEEcCCCcccccccHHHHHHHHHHHHHhc---------CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 334554 588888888521 1236789999999999999988 999999999999
Q ss_pred cEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHH
Q 040324 271 AYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPP 346 (488)
Q Consensus 271 ~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~ 346 (488)
++||+||+|+ +||++|.. ..+++++.| |++ ||||++|+ | ||+++++++++.+....+. .+. .+|+
T Consensus 236 ~~li~DE~~~--g~g~~g~~~~~~~~~~~~---di~--s~sK~~~~-G~riG~~~~~~~~~~~~~~~~~~--~t~-~~~~ 304 (439)
T 3dxv_A 236 ILVVCDEVKV--GLARSGRLHCFEHEGFVP---DIL--VLGKGLGG-GLPLSAVIAPAEILDCASAFAMQ--TLH-GNPI 304 (439)
T ss_dssp CEEEEECTTT--CTTTTSSSSGGGGTTCCC---SEE--EECGGGGT-TSCCEEEEEEHHHHTSCSSSSCC--TTT-TCHH
T ss_pred CEEEEecccc--CCCcCchhhHHHhcCCCC---CEE--EEcchhcC-CcceEEEEECHHHHhhhcCCCcC--CCc-ccHH
Confidence 9999999999 79999885 667888776 666 99999985 4 9999999998877654333 344 8899
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEe--------CCcchHHHH
Q 040324 347 AAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMV--------YNPAKVSSF 414 (488)
Q Consensus 347 ~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~--------~~~~~~~~~ 414 (488)
.+++++++|+.+. .+++.++++++.+++++.|+++ +.....+..+.++++.+ .......++
T Consensus 305 ~~~aa~aal~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (439)
T 3dxv_A 305 SAAAGLAVLETID-------RDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKL 377 (439)
T ss_dssp HHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHH
T ss_pred HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHH
Confidence 9999999999873 2456778888888888888764 32222223466777766 333456789
Q ss_pred HHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 415 SRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 415 ~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
.+.|+++||.+.+.+. ..+++||++++.+|++|+++++++|+++++++.
T Consensus 378 ~~~l~~~Gv~v~~~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 378 IYRAYQLGLVVYYVGM-----NGNVLEFTPPLTITETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp HHHHHHHTEECEEEST-----TSCEEEECCCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHCCcEEeecCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999997431 237899999999999999999999999998774
No 26
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=1.7e-38 Score=323.41 Aligned_cols=346 Identities=15% Similarity=0.120 Sum_probs=267.0
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.+++|+++||.| |++||||+++. ...++++||.+.+++.++++++.... . . ..
T Consensus 38 ~~~~~~~~~~g~~~~d~~---------------g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~---~-~-~~ 97 (420)
T 2pb2_A 38 PADFIPVKGKGSRVWDQQ---------------GKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTS---N-V-FT 97 (420)
T ss_dssp -CCSCEEEEEBTEEEETT---------------CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC---T-T-SC
T ss_pred CCCceEEeeecCEEEECC---------------CCEEEEccccccccccCCCCHHHHHHHHHHHHhccccc---C-c-cC
Confidence 367788899999999988 99999997652 23345567999999999998864322 1 1 24
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccC-------CC-cEEEEe-CCCchHHHHHHHhcCCe-------
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMG-------KG-SLIISD-SLNHNSIVNGARGSGAT------- 208 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~-------~~-~~Vl~~-~~~h~~~~~~~~~~g~~------- 208 (488)
.+...+++++++++++.++++++++|++|+..+++++.. ++ +.|++. ..+|+.+...+...|..
T Consensus 98 ~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~ 177 (420)
T 2pb2_A 98 NEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFG 177 (420)
T ss_dssp CHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSS
T ss_pred CHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCC
Confidence 577899999999999988899999999999888777643 44 355555 55667666666666643
Q ss_pred -----EEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCC----CChHHHHHHHHHcCcEEEEEccc
Q 040324 209 -----IRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGEL----CKLPEIITICKRYKAYTYLDEAH 279 (488)
Q Consensus 209 -----v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~----~~l~~l~~l~~~~g~~li~DE~~ 279 (488)
+..++++|+++|++.+++ ++++|+++++++++|.+ .++++|+++|++||++||+||+|
T Consensus 178 p~~~~~~~~~~~d~~~le~~i~~-------------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~ 244 (420)
T 2pb2_A 178 PKPADIIHVPFNDLHAVKAVMDD-------------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQ 244 (420)
T ss_dssp SCCSCEEEECTTCHHHHHHHCCT-------------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCeEEecCCCHHHHHHHhcc-------------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 677888899999988753 46688889999887862 36999999999999999999999
Q ss_pred cccccCCCCCCc-chhcCCCCCCccEEEcccccccCCc--ccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHH
Q 040324 280 SIGAVGKTGRGV-CELLGVDTSDVDIMMGTFSKSFGSY--GGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQ 356 (488)
Q Consensus 280 s~g~~g~~g~~~-~~~~~v~p~~~di~~~t~sK~~g~~--Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~ 356 (488)
+ +++++|... .+.+++.| |++ ||||++|++ .|++++++++++.+....+..+++ ++|+.++++.++|+
T Consensus 245 ~--g~~~~g~~~~~~~~~~~~---dii--t~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~--~~~~~~aa~~a~L~ 315 (420)
T 2pb2_A 245 C--GMGRTGDLFAYMHYGVTP---DIL--TSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYG--GNPLACAVAGAAFD 315 (420)
T ss_dssp T--TTTTTSSSSHHHHHTCCC---SEE--EECGGGGTTSCCEEEEECHHHHTTCC----CCEEC--CCHHHHHHHHHHHH
T ss_pred c--CcccCCcHHHHHhcCCCC---CeE--EecccccCCCceEEEEEhHHHHHhhcCCCcCcccC--cCHHHHHHHHHHHH
Confidence 8 799998763 57778776 666 899999842 299999998887765443444555 89999999999999
Q ss_pred HHhccCCCchHHHHHHHHHHHHHHHHHHHHhC--CCeec--CCCCCCeEEEEeCCcc--hHHHHHHHHHHCCceEEeecC
Q 040324 357 VVIGEDGSCRGAQKLARIRENSNFFRSKLQKM--GFEVL--GDNDSPVMPIMVYNPA--KVSSFSRECLKQNVAIVTVGF 430 (488)
Q Consensus 357 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~l~~~Gi~v~~~~~ 430 (488)
.+. .+++.++++++++++++.|+++ +++.. ....+.++++.+.... ...++.+.|+++||.+.+.+
T Consensus 316 ~~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~- 387 (420)
T 2pb2_A 316 IIN-------TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG- 387 (420)
T ss_dssp HHS-------SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS-
T ss_pred HHH-------hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC-
Confidence 873 2578889999999999999875 22211 1224677787775432 46789999999999998632
Q ss_pred CCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 431 PATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 431 ~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
.+++||+|++.+|++|+++++++|+++++++
T Consensus 388 ------~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 388 ------ADVMRFAPSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp ------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998764
No 27
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=1.2e-38 Score=325.72 Aligned_cols=343 Identities=13% Similarity=0.108 Sum_probs=264.8
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.+++|.+++|.| |++||||+++.+ ..+||+||++.+|+.+++++.... ...
T Consensus 34 ~~p~~~~~~~G~~~~d~~---------------g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~-------~~~ 91 (429)
T 3k28_A 34 MNPLFMERGKGSKVYDID---------------GNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSF-------GAP 91 (429)
T ss_dssp CCCCCEEEEEBTEEEETT---------------CCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCC-------SSC
T ss_pred CCCceEEEeecCEEEECC---------------CCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCc-------CCC
Confidence 577889999999999999 999999977643 667888999999999999885321 134
Q ss_pred hhhHHHHHHHHHHHh-CCCCeEEeCCcHHHHhhhhhccc---CCCcEEEEeCCCchHHHHHHHhcC--------------
Q 040324 145 LALHNELEECVARFV-GKPAAIVFGMGYVTNSSILPVLM---GKGSLIISDSLNHNSIVNGARGSG-------------- 206 (488)
Q Consensus 145 ~~~~~~l~~~la~~~-g~~~~i~~~sGs~a~~~~~~~~~---~~~~~Vl~~~~~h~~~~~~~~~~g-------------- 206 (488)
.+...+|++++++++ +.++++++++|++|+..+++.+. ++..+|..+..+|+.+.......+
T Consensus 92 ~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~ 171 (429)
T 3k28_A 92 TEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGV 171 (429)
T ss_dssp CHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTC
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCC
Confidence 577789999999998 45678889999999987776653 445556666777766544332222
Q ss_pred -----CeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEc
Q 040324 207 -----ATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDE 277 (488)
Q Consensus 207 -----~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE 277 (488)
..+..++++|+++|++++++. +.++++|+++++++++|.+.+ +++|+++|++||++||+||
T Consensus 172 ~~~~~~~~~~~~~~d~~~le~~l~~~----------~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE 241 (429)
T 3k28_A 172 PEGVAKNTITVAYNDLESVKYAFEQF----------GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDE 241 (429)
T ss_dssp CHHHHTTEEEEETTCHHHHHHHHHHH----------GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred CCcccCceeecCCCCHHHHHHHHHhC----------CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 256678889999999999863 126789999999999999988 9999999999999999999
Q ss_pred cccccccCCCCCC-cchhcCCCCCCccEEEcccccccCC--cccEEEeCHHHHHHHHhhC---CCCcccCCCCHHHHHHH
Q 040324 278 AHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGS--YGGYIAGSKELIQYLKYNC---PAHLYATSISPPAAEQI 351 (488)
Q Consensus 278 ~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~--~Gg~i~~~~~~~~~~~~~~---~~~~~~~~~~p~~~aa~ 351 (488)
+|+ +| ++|.. ..+++++.| |++ ||||++|+ +.|++++++++++.+.... +..++ +.+|++++++
T Consensus 242 v~~--g~-~~g~~~~~~~~~~~~---di~--t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~a~aaa 311 (429)
T 3k28_A 242 VMT--GF-RVAYNCGQGYYGVTP---DLT--CLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTL--SGNPLAMAAG 311 (429)
T ss_dssp TTT--TT-TSSTTHHHHHHTCCC---SEE--EECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTT--TTCHHHHHHH
T ss_pred ccc--cc-ccCcchHHHHhCCCC---cee--hhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCC--CCChHHHHHH
Confidence 998 88 88876 677888877 665 89999975 2399999999998876432 33333 4899999999
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCCc-------------chHHHH
Q 040324 352 ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYNP-------------AKVSSF 414 (488)
Q Consensus 352 ~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 414 (488)
+++|+.+ . +++.++++++++++++.|+++ +........+.++++.+... ....++
T Consensus 312 ~aal~~~-------~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
T 3k28_A 312 YETLVQL-------T-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAY 383 (429)
T ss_dssp HHHHHTC-------C-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHH
T ss_pred HHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHH
Confidence 9999875 3 678889999999999998875 32211122356666665321 234688
Q ss_pred HHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 415 SRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 415 ~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
++.|+++||.+.+.+ .+.+|+ ++.+|++|+++++++|+++++++
T Consensus 384 ~~~l~~~Gv~v~~~~-------~~~~r~--~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 384 YREMVEQGVFLPPSQ-------FEGLFL--STVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp HHHHHHTTEECCSST-------TSCBCC--CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCeEEecCC-------CCCEEE--ECCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999987522 356777 56999999999999999998765
No 28
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=2.9e-38 Score=322.74 Aligned_cols=343 Identities=13% Similarity=0.162 Sum_probs=259.1
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.++.|+++||.| |++||||+++. ...+||+||++.+|+.+++++... + ...
T Consensus 34 ~~p~~~~~~~G~~~~d~~---------------g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~------~~~ 91 (429)
T 4e77_A 34 GIPLFIERADGAYLFDVD---------------GKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLS-F------GAP 91 (429)
T ss_dssp SCCCCEEEEEBTEEEETT---------------CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC-C------SSC
T ss_pred CCCceEEEeecCEEEECC---------------CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcc-c------CCC
Confidence 367788999999999999 99999997654 367888899999999999987421 1 124
Q ss_pred hhhHHHHHHHHHHHhC-CCCeEEeCCcHHHHhhhhhc---ccCCCcEEEEeCCCchHHHHHHHhc---------------
Q 040324 145 LALHNELEECVARFVG-KPAAIVFGMGYVTNSSILPV---LMGKGSLIISDSLNHNSIVNGARGS--------------- 205 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g-~~~~i~~~sGs~a~~~~~~~---~~~~~~~Vl~~~~~h~~~~~~~~~~--------------- 205 (488)
.+...+|+++++++++ .++++++++|++|+..+++. ..++..+|..+..+|+.+.......
T Consensus 92 ~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 171 (429)
T 4e77_A 92 TEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGV 171 (429)
T ss_dssp CHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTS
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCC
Confidence 5777899999999985 56789999999999777663 4566677777778887765322111
Q ss_pred ----CCeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEc
Q 040324 206 ----GATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDE 277 (488)
Q Consensus 206 ----g~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE 277 (488)
...+..++++|+++|++++++. +.++++|+++++++++|.+.+ +++|+++|++||++||+||
T Consensus 172 ~~~~~~~~~~~~~~d~~~le~~l~~~----------~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DE 241 (429)
T 4e77_A 172 PTDFAKHTLTCTYNDLASVRQAFEQY----------PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDE 241 (429)
T ss_dssp CGGGGTTEEEECTTCHHHHHHHHHHS----------TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCccCCceeecCCCCHHHHHHHHHhc----------CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1245677888999999999752 125788999999999999888 9999999999999999999
Q ss_pred cccccccCCCCCC-cchhcCCCCCCccEEEcccccccCC--cccEEEeCHHHHHHHHhhC---CCCcccCCCCHHHHHHH
Q 040324 278 AHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGS--YGGYIAGSKELIQYLKYNC---PAHLYATSISPPAAEQI 351 (488)
Q Consensus 278 ~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~--~Gg~i~~~~~~~~~~~~~~---~~~~~~~~~~p~~~aa~ 351 (488)
+|+ +| ++|.. ..+++++.| |++ ||||++|+ ++|++++++++++.+.... +..++ +++|+.++++
T Consensus 242 v~~--g~-r~g~~~~~~~~~~~p---di~--t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~--~~~~~~~aaa 311 (429)
T 4e77_A 242 VMT--GF-RVALAGAQDYYHVIP---DLT--CLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTL--SGNPIAMAAG 311 (429)
T ss_dssp TTT--BT-TTBTTCHHHHTTCCC---SEE--EEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CC--CCCHHHHHHH
T ss_pred ccc--Cc-ccCcchHHHhcCCCC---Cee--eecccccCCCCeEEEEECHHHHHHhccCCCccccCCC--CCCHHHHHHH
Confidence 999 78 77765 678888877 665 99999984 2399999999998876532 33333 4999999999
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCCc--------------chHHH
Q 040324 352 ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYNP--------------AKVSS 413 (488)
Q Consensus 352 ~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~--------------~~~~~ 413 (488)
+++|+.+. .+++.++++++.+++++.|+++ ++.......+.++++.+... ....+
T Consensus 312 ~aal~~~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (429)
T 4e77_A 312 FACLTEIS-------QVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKR 384 (429)
T ss_dssp HHHHHHHT-------STTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHH
T ss_pred HHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHH
Confidence 99999873 2456777788888888877664 44332233456777776543 23368
Q ss_pred HHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 414 FSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 414 ~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
+.+.|+++||.+.+.+ ..++| +++.+|++|+++++++|++++++
T Consensus 385 ~~~~l~~~Gi~v~~~~-------~~~~~--~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 385 FFHLMLEEGVYLAPSA-------FEAGF--MSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp HHHHHHHTTEECCSST-------TSCEE--CCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCeEEeecC-------CCCEE--EeccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999988532 13455 46799999999999999998754
No 29
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=6.4e-39 Score=330.96 Aligned_cols=355 Identities=15% Similarity=0.127 Sum_probs=255.0
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.++..+.+++|+++||.| |++||||+|+.+ +.+||+||++.+|+.+++.+....+.........
T Consensus 44 ~~~~~~~~~~G~~l~d~d---------------G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~ 108 (472)
T 1ohv_A 44 HFFCNYEESRGNYLVDVD---------------GNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPP 108 (472)
T ss_dssp CCCBCGGGCBBTEEEBTT---------------SCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCB
T ss_pred cCCceEEEEEcCEEEeCC---------------CCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccH
Confidence 455678999999999999 999999976655 6788889999999999976542222111100112
Q ss_pred hhhHHHHHHHHHHHh--CCCCeEEeCCcHHHHhhhhhccc---------------------------C--CCcEEEEeCC
Q 040324 145 LALHNELEECVARFV--GKPAAIVFGMGYVTNSSILPVLM---------------------------G--KGSLIISDSL 193 (488)
Q Consensus 145 ~~~~~~l~~~la~~~--g~~~~i~~~sGs~a~~~~~~~~~---------------------------~--~~~~Vl~~~~ 193 (488)
.++.+++++.|+++. +.+++++++||++||+.+++.+. + +..+|.++..
T Consensus 109 ~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~ 188 (472)
T 1ohv_A 109 ENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGA 188 (472)
T ss_dssp TTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTC
T ss_pred HHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCC
Confidence 334445555555565 44679999999999987776652 2 2456666778
Q ss_pred CchHHHHHHHhcCCeE-------------EEee-----------CC------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 194 NHNSIVNGARGSGATI-------------RVFQ-----------HN------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 194 ~h~~~~~~~~~~g~~v-------------~~~~-----------~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
+|+.+..++.+++... ..++ +| |+++|+++|++....+ .++++
T Consensus 189 yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~-------~~~~~ 261 (472)
T 1ohv_A 189 FHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKK-------KTVAG 261 (472)
T ss_dssp CCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTT-------CCEEE
T ss_pred cccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 8888887777765321 1221 12 5778888887532110 14678
Q ss_pred EEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCccc
Q 040324 244 VVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYGG 318 (488)
Q Consensus 244 vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~Gg 318 (488)
|+++++++++|.+.+ |++|+++|++||++||+||||+ ++|++|.+ ..+++++. ..+|++ ||||++ .+||
T Consensus 262 vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~--g~g~~g~~~~~~~~gv~-~~~Di~--t~sK~~-l~GG 335 (472)
T 1ohv_A 262 IIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT--GGGSTGKFWAHEHWGLD-DPADVM--TFSKKM-MTGG 335 (472)
T ss_dssp EEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT--TTTTTSSSSGGGGGCCS-SCCSEE--EECGGG-SSEE
T ss_pred EEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc--CCCCCCCchhccccCCC-CCCCEE--EEcccc-ccCC
Confidence 999999999999887 9999999999999999999999 79999875 67778875 123776 999994 2357
Q ss_pred EEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC--CCe----e
Q 040324 319 YIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM--GFE----V 392 (488)
Q Consensus 319 ~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~----~ 392 (488)
+++ ++++. .+....+..++ ++||+.+++++++|+.+. .+++.+++++++++|+++|+++ +++ .
T Consensus 336 ~~~-~~~~~-~~~~~~~~~T~--~~~~~~~aaa~aal~~~~-------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~ 404 (472)
T 1ohv_A 336 FFH-KEEFR-PNAPYRIFNTW--LGDPSKNLLLAEVINIIK-------REDLLSNAAHAGKVLLTGLLDLQARYPQFISR 404 (472)
T ss_dssp EEE-CGGGS-CSSSSSSCCSS--SSCHHHHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEE
T ss_pred ccC-chhhc-ccccccccCcc--CccHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 777 65542 11122233333 489999999999999884 2357788899999999999875 222 1
Q ss_pred cCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 393 LGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
.. ..+.++++.+.......++++.|+++||.+.+.+ .+++||++++.+|++||++++++|+++++++
T Consensus 405 ~~-~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g-------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 405 VR-GRGTFCSFDTPDESIRNKLISIARNKGVMLGGCG-------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp EE-EETTEEEEECSSHHHHHHHHHHHHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred ec-CCceEEEEEeCChhHHHHHHHHHHHCCeEEecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 22 2356777766544456789999999999998632 4789999999999999999999999988754
No 30
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=8.8e-40 Score=355.18 Aligned_cols=360 Identities=11% Similarity=0.039 Sum_probs=259.8
Q ss_pred CCCccCCCCc--eEEEeeccccCCcccccccCCcc----eeEEeccc-cccCCCCC-CccchHHHHHHHHHcCCCCCCcc
Q 040324 68 GRPLSSAPDA--WFDVVERYSNDNNKTLKRTNNVS----RCLNLGSY-NYLGFAAA-DEYCTPRVIDSLKKYSHSTCSSR 139 (488)
Q Consensus 68 ~~~i~~~~G~--~~~~~dr~~~~~~~~~~~~~~g~----~~ld~~s~-~~lg~~~~-~~~v~~a~~~~l~~~~~~~~~~~ 139 (488)
+.+|.+++|. |+||.| |+ +|||++|+ ...++||+ ||++++|+++|++++++..
T Consensus 357 p~~i~~a~G~g~~l~D~d---------------G~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~---- 417 (831)
T 4a0g_A 357 VTVIDSRCGENFSIYKAS---------------DNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVM---- 417 (831)
T ss_dssp CEEEEEEETTEEEEEEHH---------------HHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCC----
T ss_pred CeEEEEeeccceEEEECC---------------CCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccc----
Confidence 4567788885 889988 88 99999654 55789999 9999999999999986543
Q ss_pred cCCCChhhHHHHHHHHHHHhC---CCCeEEeCCcHHHHhhhhhccc------------------CCCcEEEEeCCCchHH
Q 040324 140 VDGGTLALHNELEECVARFVG---KPAAIVFGMGYVTNSSILPVLM------------------GKGSLIISDSLNHNSI 198 (488)
Q Consensus 140 ~~~g~~~~~~~l~~~la~~~g---~~~~i~~~sGs~a~~~~~~~~~------------------~~~~~Vl~~~~~h~~~ 198 (488)
.....++...+|+++|+++++ .++++|++||++||+.+++... ++.++|.....||+.+
T Consensus 418 ~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T 497 (831)
T 4a0g_A 418 FPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDT 497 (831)
T ss_dssp CTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSS
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCc
Confidence 111346777899999999997 4689999999999987766541 2446788889999999
Q ss_pred HHHHHhcCCe---------------E---------------EEee------------CCCH------------------H
Q 040324 199 VNGARGSGAT---------------I---------------RVFQ------------HNTP------------------S 218 (488)
Q Consensus 199 ~~~~~~~g~~---------------v---------------~~~~------------~~d~------------------~ 218 (488)
..++..++.. + +.+| ++|. +
T Consensus 498 ~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (831)
T 4a0g_A 498 LGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSA 577 (831)
T ss_dssp HHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHH
T ss_pred eeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHH
Confidence 9998887531 0 1111 2232 3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCceEEEEEcCc-CCCCCCCCC----hHHHHHHHHHcCcEEEEEccccccccCCCCCC-cc
Q 040324 219 HLEEVLREQIAEGQPRTRRPWKKIMVVVEGI-YSMEGELCK----LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG-VC 292 (488)
Q Consensus 219 ~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v-~s~~G~~~~----l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~ 292 (488)
+|++.|++.+.. .++.+.++||+||| ++.+|.+.+ |++|+++|++||++||+||||+ +|||+|++ ++
T Consensus 578 ~le~~l~~~~~~-----~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~t--GfGRtG~~fa~ 650 (831)
T 4a0g_A 578 YLSKHLQEHSGV-----RQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFT--GFWRLGVETTT 650 (831)
T ss_dssp HHHHHC--------------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTT--TTTTTSBSSTH
T ss_pred HHHHHHHhhhhh-----cCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCcc--ccccCCCchhh
Confidence 455555432100 01347899999997 888888774 9999999999999999999999 99999987 78
Q ss_pred hhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhC------CCCcccCCCCHHHHHHHHHHHHHHhccCC
Q 040324 293 ELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNC------PAHLYATSISPPAAEQIISAIQVVIGEDG 363 (488)
Q Consensus 293 ~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~------~~~~~~~~~~p~~~aa~~a~L~~i~~~~~ 363 (488)
+++|+.| ||+ |++|++|++. |++++++++++.+.... ++++|+ +||++|++++++|++++++..
T Consensus 651 e~~gv~P---Dii--tlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~--g~Pla~Aaala~L~~i~~~~l 723 (831)
T 4a0g_A 651 ELLGCKP---DIA--CFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYS--AHAMGCATAAKAIQWFKDPET 723 (831)
T ss_dssp HHHSSCC---SEE--EECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTT--TCHHHHHHHHHHHHHHHCTTT
T ss_pred HhcCCCC---cEE--EEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCc--ccHHHHHHHHHHHHHHHhhHH
Confidence 9999988 676 9999997632 99999999999886432 444554 999999999999999965432
Q ss_pred CchHHHHHHHHHH-HHHHHHHHHHhCCCeecCCCCCCeEEEEeCCc--------chHHHHHHHHHHCCceEEeecCCCcc
Q 040324 364 SCRGAQKLARIRE-NSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNP--------AKVSSFSRECLKQNVAIVTVGFPATP 434 (488)
Q Consensus 364 ~~~~~~~~~~~~~-~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~Gi~v~~~~~~~~~ 434 (488)
.+...+..+++++ ..+.+.+.+++..........+.++.+.+... ....++.+.|+++||++.+.
T Consensus 724 ~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~------ 797 (831)
T 4a0g_A 724 NHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL------ 797 (831)
T ss_dssp CTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec------
Confidence 2222111111111 01123344544432111112356777766432 34567999999999999842
Q ss_pred CCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 435 LLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 435 ~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
.+++||+||+.+|++|||+++++|++++++++
T Consensus 798 --g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 798 --GNVIYLMCGPCTSPEICRRLLTKLYKRLGEFN 829 (831)
T ss_dssp --TTEEEEECCTTCCHHHHHHHHHHHHHHHTTTC
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 27999999999999999999999999987664
No 31
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=1.4e-41 Score=347.18 Aligned_cols=341 Identities=16% Similarity=0.135 Sum_probs=264.8
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.+++|+++||+| |++||||+++.+ +.+||+||++.+|+.+|+++. .... ..
T Consensus 81 ~~p~~~~~~~G~~l~D~d---------------G~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~-~~~~------~~ 138 (465)
T 2yky_A 81 PFPLVIAQGTGSRFQDVD---------------GHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVG-LNLS------TQ 138 (465)
Confidence 457788999999999999 999999976644 678888999999999999883 2221 24
Q ss_pred hhhHHHHHHHHHHHh-CCCCeEEeCCcHHHHhhhhhcc---cCCCcEEEEeCCCchHHHHHHH---hcCC--eEEEeeCC
Q 040324 145 LALHNELEECVARFV-GKPAAIVFGMGYVTNSSILPVL---MGKGSLIISDSLNHNSIVNGAR---GSGA--TIRVFQHN 215 (488)
Q Consensus 145 ~~~~~~l~~~la~~~-g~~~~i~~~sGs~a~~~~~~~~---~~~~~~Vl~~~~~h~~~~~~~~---~~g~--~v~~~~~~ 215 (488)
.+...+|+++|++++ +.+++++++||++|++.+++.+ +++.++|.++..+|+.+...+. ..|. .+..+++|
T Consensus 139 ~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~ 218 (465)
T 2yky_A 139 TENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYN 218 (465)
Confidence 566789999999999 6778999999999998777654 5666777778888887765441 1123 45677889
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEccccccccCCCCCC-
Q 040324 216 TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG- 290 (488)
Q Consensus 216 d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~- 290 (488)
|+++|++++++. +.++++|++|++++++|.+.+ +++|+++|++||++||+||+|+ + ++|.+
T Consensus 219 d~~~l~~~l~~~----------~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~---r~g~~~ 284 (465)
T 2yky_A 219 DVEGTADLLKRH----------GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S---RLSGGG 284 (465)
Confidence 999999998752 125678889999999997776 9999999999999999999999 4 55554
Q ss_pred cchhcCCCCCCccEEEcccccccCCc--ccEEEeCHHHHHHHHh---h--CCCCcccCCCCHHHHHHHHHHHHHHhccCC
Q 040324 291 VCELLGVDTSDVDIMMGTFSKSFGSY--GGYIAGSKELIQYLKY---N--CPAHLYATSISPPAAEQIISAIQVVIGEDG 363 (488)
Q Consensus 291 ~~~~~~v~p~~~di~~~t~sK~~g~~--Gg~i~~~~~~~~~~~~---~--~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~ 363 (488)
..+++++.| |++ ||||++|++ .||+++++++++.+.. . .+..++ ++||+++++++++|++++
T Consensus 285 a~~~~gv~p---Di~--t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~--~~npla~aAa~aaL~~l~---- 353 (465)
T 2yky_A 285 AQEMLGISA---DLT--TLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTF--NNNILTMSAGHAALTQIY---- 353 (465)
Confidence 677788876 665 999999872 2999999999998876 1 233344 499999999999999883
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCC-c------------chHHHHHHHHHHCCceEE
Q 040324 364 SCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYN-P------------AKVSSFSRECLKQNVAIV 426 (488)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~l~~~Gi~v~ 426 (488)
.+++.+++++++++++++|+++ ++.......+.++++.+.. + .....+++.|+++||++.
T Consensus 354 ---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~ 430 (465)
T 2yky_A 354 ---TRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLA 430 (465)
Confidence 3467888999999999999876 2222223345777776653 1 124578999999999998
Q ss_pred eecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 427 TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 427 ~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+.+++ . +|+.+|++|||+++++|+++++++
T Consensus 431 p~~~~------~-----~s~~~t~edid~~l~~l~~~l~~~ 460 (465)
T 2yky_A 431 PRGMY------A-----LSLEIADAGRDAFAEALADFIGEQ 460 (465)
Confidence 64431 1 677899999999999999998775
No 32
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.2e-37 Score=314.31 Aligned_cols=343 Identities=16% Similarity=0.164 Sum_probs=271.7
Q ss_pred hcccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccc-cccCCCCCCccchHHHHHHHHHcCCCCCCcccCC
Q 040324 64 QDCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSY-NYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDG 142 (488)
Q Consensus 64 ~~~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~-~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~ 142 (488)
...+|..+.++.|.+++|.| |++||||+++ +.+++||+||.+.+++.++++++...+. .
T Consensus 15 ~~~~~~~~~~~~g~~~~d~~---------------g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~ 74 (392)
T 3ruy_A 15 YHPLPIVISKAEGVWVEDPE---------------GNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR-----A 74 (392)
T ss_dssp CCCCSCEECEEEBTEEECTT---------------CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT-----T
T ss_pred CCCCCceEEeeeeCEEEeCC---------------CCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccccc-----c
Confidence 34667778899999999988 9999999654 5567888899999999999988644331 1
Q ss_pred CChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccC----------CCcEEEEeCCCchHH-HHHHHhcCC----
Q 040324 143 GTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMG----------KGSLIISDSLNHNSI-VNGARGSGA---- 207 (488)
Q Consensus 143 g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~----------~~~~Vl~~~~~h~~~-~~~~~~~g~---- 207 (488)
+..+...++++.+++++|.++++++++|++|+..+++.+.. .++.|++..+.|+.. .......+.
T Consensus 75 ~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 154 (392)
T 3ruy_A 75 FHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYK 154 (392)
T ss_dssp SEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTT
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhc
Confidence 35667799999999999988899999999999777776543 266888887777544 333344322
Q ss_pred --------eEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEE
Q 040324 208 --------TIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYL 275 (488)
Q Consensus 208 --------~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~ 275 (488)
.+..++++|+++|+++++. ++.+|+++++++++|.+.+ +++|+++|++||++||+
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~-------------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~ 221 (392)
T 3ruy_A 155 RGFGPMLPGIIVIPYGDLEALKAAITP-------------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVA 221 (392)
T ss_dssp TTCCSCCSSEEEECTTCHHHHHHHCCT-------------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEE
T ss_pred cccCCCCCCCeeeCcccHHHHHHHhcc-------------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3677888999999988763 5678888999999999998 99999999999999999
Q ss_pred EccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc---ccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHH
Q 040324 276 DEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY---GGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQI 351 (488)
Q Consensus 276 DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~---Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~ 351 (488)
||+|+ +++++|.. ..+.+++.+ |++ ||||+++++ +|++++++++++.+....+..+++ .+++.++++
T Consensus 222 De~~~--~~~~~g~~~~~~~~~~~~---d~~--~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~ 292 (392)
T 3ruy_A 222 DEIQT--GLGRTGKVFACDWDNVTP---DMY--ILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFG--GNPLACAVS 292 (392)
T ss_dssp ECTTT--TTTTTSSSSGGGGGTCCC---SEE--EECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSST--TCHHHHHHH
T ss_pred eechh--CCCccccchhhhccCCCC---CEE--EEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCC--CCHHHHHHH
Confidence 99998 88888876 556677765 666 899999763 499999999988776655554554 899999999
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCee--cCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeec
Q 040324 352 ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEV--LGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVG 429 (488)
Q Consensus 352 ~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~ 429 (488)
.++|+.+. .+++.++++++.+++++.|++++.+. .....+.++++.+.. ...++.+.|+++||.+.+.
T Consensus 293 ~~~l~~~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~--~~~~l~~~l~~~gi~v~~~- 362 (392)
T 3ruy_A 293 IAALEVLE-------EEKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLFIGIELNE--PARPYCEQLKAAGLLCKET- 362 (392)
T ss_dssp HHHHHHHH-------HTTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETTEEEEEESS--CSHHHHHHHHTTTEECCCB-
T ss_pred HHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeeeEEEEEEcc--hHHHHHHHHHHCCcEEecC-
Confidence 99999873 25678889999999999999885321 112235666666644 5668999999999998842
Q ss_pred CCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 430 FPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 430 ~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
+.+++||+++..+|++|+++++++|++++
T Consensus 363 ------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 363 ------HENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp ------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 24789999999999999999999999875
No 33
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=1.5e-37 Score=317.88 Aligned_cols=344 Identities=17% Similarity=0.157 Sum_probs=263.5
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.+++|+++||.| |++||||+++.. ..++|+||.+.+|+.+++++ +..+. +.
T Consensus 37 ~~p~~~~~~~G~~~~d~~---------------g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~-~~~~~------~~ 94 (434)
T 2epj_A 37 PYPFYVKRGEGAYLYTVD---------------GARIVDLVLAYGPLILGHKHPRVLEAVEEALAR-GWLYG------AP 94 (434)
T ss_dssp SSCCCEEEEEBTEEEETT---------------CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT-CSCCS------SC
T ss_pred CCCeeEEeeecCEEEECC---------------CCEEEEcccchhcccCCCCCHHHHHHHHHHHHh-CCCCC------CC
Confidence 347788899999999998 999999976532 34555789999999999987 32221 35
Q ss_pred hhhHHHHHHHHHHHh-CCCCeEEeCCcHHHHhhhhhc---ccCCCcEEEEeCCCchHHHHHHHh-------------cC-
Q 040324 145 LALHNELEECVARFV-GKPAAIVFGMGYVTNSSILPV---LMGKGSLIISDSLNHNSIVNGARG-------------SG- 206 (488)
Q Consensus 145 ~~~~~~l~~~la~~~-g~~~~i~~~sGs~a~~~~~~~---~~~~~~~Vl~~~~~h~~~~~~~~~-------------~g- 206 (488)
.+...++++.+++++ +.++++++++|++|+..+++. +++++++|+++..+|+.+...... .|
T Consensus 95 ~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~ 174 (434)
T 2epj_A 95 GEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGV 174 (434)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTC
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCC
Confidence 667789999999999 667889999999999877776 677777777777777654422211 13
Q ss_pred -----CeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEc
Q 040324 207 -----ATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDE 277 (488)
Q Consensus 207 -----~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE 277 (488)
..+..++++|+++|++++++.. .++++|+++++++++|.+.+ +++|+++|++||++||+||
T Consensus 175 ~~~~~~~~~~~~~~d~~~le~~l~~~~----------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DE 244 (434)
T 2epj_A 175 PEAVARLTLVTPYNDVEALERVFAEYG----------DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDE 244 (434)
T ss_dssp CHHHHTTEEEEETTCHHHHHHHHHHHG----------GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCcccCceEecCCCCHHHHHHHHHhCC----------CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 2467788899999999997531 25778999999999999888 9999999999999999999
Q ss_pred cccccccCCCCCC-cchhcCCCCCCccEEEcccccccCC--cccEEEeCHHHHHHHHhhC---CCCcccCCCCHHHHHHH
Q 040324 278 AHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGS--YGGYIAGSKELIQYLKYNC---PAHLYATSISPPAAEQI 351 (488)
Q Consensus 278 ~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~--~Gg~i~~~~~~~~~~~~~~---~~~~~~~~~~p~~~aa~ 351 (488)
+|+ ++ ++|.. ..+++++.| |++ ||||++|+ ++|++++++++++.+.... +..++ ++||+.++++
T Consensus 245 v~~--g~-~~g~~~~~~~~~~~~---di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~--~~~~~~~aa~ 314 (434)
T 2epj_A 245 VVT--GF-RLGLEGAQGYFNIEG---DII--VLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTF--NAHPITMAAG 314 (434)
T ss_dssp TTT--TT-TSSTTHHHHHHTCCC---SEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTT--TTCHHHHHHH
T ss_pred chh--ce-eCCcchhhHHhCCCC---Cee--eecchhcCCcceeeeeecHHHHHhhccCCCcccCCCC--CcCHHHHHHH
Confidence 999 67 55654 567788876 665 99999987 4499999999988776422 22233 4899999999
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCC-------------cchHHHH
Q 040324 352 ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYN-------------PAKVSSF 414 (488)
Q Consensus 352 ~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 414 (488)
.++|+.+.+ +++.++++++++++++.|+++ ++.......+.++++.+.. .....++
T Consensus 315 ~a~l~~~~~-------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (434)
T 2epj_A 315 LATLKALEE-------EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKL 387 (434)
T ss_dssp HHHHHHHHH-------SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHH
Confidence 999998742 357788888999999988775 5532222346788888764 1235679
Q ss_pred HHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 415 SRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 415 ~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
.+.|+++||.+.+.++ .++ ++++.+|++|+++++++|+++++++
T Consensus 388 ~~~l~~~Gv~v~~~~~-------~~~--~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 388 HEEMLRRGVFIAPSNL-------EAV--FTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp HHHHHHTTEECCSSTT-------SCE--ECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEeccCC-------CcE--EEeccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999985321 234 4567999999999999999998765
No 34
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=1.7e-37 Score=316.87 Aligned_cols=343 Identities=20% Similarity=0.172 Sum_probs=262.3
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.++.|.++||.| |++||||+++. ...+||+||.+.+|+.+++++... +. ..
T Consensus 33 ~~p~~~~~~~G~~~~d~~---------------g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~------~~ 90 (427)
T 3fq8_A 33 GQPIVFDRVKDAYAWDVD---------------GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTS-FG------AP 90 (427)
T ss_dssp SCCCCEEEEEBTEEEETT---------------SCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC-CS------SC
T ss_pred CCCceEEEeeeCEEEECC---------------CCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCC-cC------CC
Confidence 567888999999999999 99999997663 356777889999999999987522 21 25
Q ss_pred hhhHHHHHHHHHHHhC-CCCeEEeCCcHHHHhhhh---hcccCCCcEEEEeCCCchHHHHHHHhcC--------------
Q 040324 145 LALHNELEECVARFVG-KPAAIVFGMGYVTNSSIL---PVLMGKGSLIISDSLNHNSIVNGARGSG-------------- 206 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g-~~~~i~~~sGs~a~~~~~---~~~~~~~~~Vl~~~~~h~~~~~~~~~~g-------------- 206 (488)
.+...++++.++++++ .++++++++|++|+..++ +.+.+++++|+.+..+|+.+.......+
T Consensus 91 ~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 170 (427)
T 3fq8_A 91 CALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGV 170 (427)
T ss_dssp CHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSS
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCC
Confidence 6777899999999985 457888899999997776 4456777777777878775543222111
Q ss_pred -----CeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEc
Q 040324 207 -----ATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDE 277 (488)
Q Consensus 207 -----~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE 277 (488)
..+..++++|+++|++++++. +.++++|+++++++++|.+.+ +++|+++|++||++||+||
T Consensus 171 ~~~~~~~~~~~~~~d~~~le~~l~~~----------~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE 240 (427)
T 3fq8_A 171 PKKTTANTLTTPYNDLEAVKALFAEN----------PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240 (427)
T ss_dssp CHHHHTTEEEEETTCHHHHHHHHHHS----------TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcccCceeecCCCCHHHHHHHHHhC----------CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 236788899999999999762 236789999999999999998 9999999999999999999
Q ss_pred cccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc--ccEEEeCHHHHHHHHhhC---CCCcccCCCCHHHHHHH
Q 040324 278 AHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY--GGYIAGSKELIQYLKYNC---PAHLYATSISPPAAEQI 351 (488)
Q Consensus 278 ~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~--Gg~i~~~~~~~~~~~~~~---~~~~~~~~~~p~~~aa~ 351 (488)
+|+ +| ++|.. ..+++++.| |++ ||||++|++ .|++++++++++.+.... +..++ +++|+.++++
T Consensus 241 v~~--g~-~~g~~~~~~~~~~~~---di~--t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~aa~ 310 (427)
T 3fq8_A 241 VIT--GF-RIAYGGVQEKFGVTP---DLT--TLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL--SGNPLAMTAG 310 (427)
T ss_dssp TTT--BT-TTBTTHHHHHTTCCC---SEE--EECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTT--TTCHHHHHHH
T ss_pred ccc--cc-ccCcchhhHhcCCCC---Chh--hhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCC--CcCHHHHHHH
Confidence 999 78 77765 667788877 555 999999852 399999999998876432 22233 4899999999
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCCc-------------chHHHH
Q 040324 352 ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYNP-------------AKVSSF 414 (488)
Q Consensus 352 ~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 414 (488)
+++|+.+. .+++.++++++.+++++.|+++ ++.......+.++++.+... ....++
T Consensus 311 ~aal~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 383 (427)
T 3fq8_A 311 IKTLELLR-------QPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRF 383 (427)
T ss_dssp HHHHHHHT-------STTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHH
T ss_pred HHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHH
Confidence 99999873 2456777888888888888764 33222223356666666432 124579
Q ss_pred HHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 415 SRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 415 ~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
.+.|+++||.+.+.+. . |+++++.+|++|+++++++|++++++
T Consensus 384 ~~~l~~~Gi~v~~~~~-------~--r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 384 HRGMLEQGIYLAPSQF-------E--AGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHTTEECCSSTT-------S--CEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEecCCC-------C--CEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 9999999999885321 2 56667899999999999999998865
No 35
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=4.8e-37 Score=315.40 Aligned_cols=347 Identities=12% Similarity=0.124 Sum_probs=260.7
Q ss_pred cccCCCc--cCCCCceEEE-eeccccCCcccccccCCcceeEEeccccc-cCCCCCCccch-H-HHHH---HHHHcCCCC
Q 040324 65 DCFGRPL--SSAPDAWFDV-VERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCT-P-RVID---SLKKYSHST 135 (488)
Q Consensus 65 ~~~~~~i--~~~~G~~~~~-~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~-~-a~~~---~l~~~~~~~ 135 (488)
..++.++ .++.|+++|| .| |++||||+++.+ ..+||+||.+. + |+.+ ++++... +
T Consensus 31 ~~~~~~~~~~~~~g~~~~d~~~---------------g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~-~ 94 (449)
T 2cjg_A 31 DGLDIVLDLTRSGGSYLVDAIT---------------GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKP-S 94 (449)
T ss_dssp CSCSSCBCTTTCBBTEEEBTTT---------------CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCC-C
T ss_pred cCCCeeEEEeeeeeCEEEECCC---------------CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCC-C
Confidence 3455555 5999999999 88 999999966544 67888889999 9 9999 8877532 2
Q ss_pred CCcccCCCChhhHHHHHHHHHHHhC---CCCeEEeCCcHHHHhhhhhcc---cC----------C-CcEEEEeCC-CchH
Q 040324 136 CSSRVDGGTLALHNELEECVARFVG---KPAAIVFGMGYVTNSSILPVL---MG----------K-GSLIISDSL-NHNS 197 (488)
Q Consensus 136 ~~~~~~~g~~~~~~~l~~~la~~~g---~~~~i~~~sGs~a~~~~~~~~---~~----------~-~~~Vl~~~~-~h~~ 197 (488)
+ +. +..+...+++++++++++ .++++++++|++|+..+++.+ ++ + ++.|++..+ +|+.
T Consensus 95 ~-~~---~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~ 170 (449)
T 2cjg_A 95 N-SD---VYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGR 170 (449)
T ss_dssp T-TT---CCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCS
T ss_pred C-cc---cCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCc
Confidence 2 11 355677899999999985 357888899999997766543 23 1 666666665 6665
Q ss_pred HHHHHHhcCC-------------eEEEeeCCC--HHH-------------HHHHHHHHHhcCCCCCCCCCceEEEEEcCc
Q 040324 198 IVNGARGSGA-------------TIRVFQHNT--PSH-------------LEEVLREQIAEGQPRTRRPWKKIMVVVEGI 249 (488)
Q Consensus 198 ~~~~~~~~g~-------------~v~~~~~~d--~~~-------------Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v 249 (488)
+..+...++. .+..++++| .+. |++.+++. +.++++|+++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~----------~~~~~~vi~ep~ 240 (449)
T 2cjg_A 171 SGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR----------PHDIACFVAEPI 240 (449)
T ss_dssp STTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS----------TTTEEEEEECSE
T ss_pred ccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc----------CCceEEEEEeCc
Confidence 5544343332 566777777 433 66666531 125678999999
Q ss_pred CCCCCCCCC----hHHHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcccEEEeCH
Q 040324 250 YSMEGELCK----LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSK 324 (488)
Q Consensus 250 ~s~~G~~~~----l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~Gg~i~~~~ 324 (488)
++++|.+.+ +++|+++|++||++||+||+|+ ++|++|.. ..+++++.| |++ ||||++ +.|++++++
T Consensus 241 ~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~--g~g~~g~~~~~~~~~~~~---di~--t~sK~l--~iG~~~~~~ 311 (449)
T 2cjg_A 241 QGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT--GCGLTGTAWAYQQLDVAP---DIV--AFGKKT--QVCGVMAGR 311 (449)
T ss_dssp ETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT--TTTTTSSSSTHHHHTCCC---SEE--EECGGG--SSEEEEECG
T ss_pred CCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc--CCCccCcceeecccCCCc---eEE--EecCcc--cEEEEEECH
Confidence 999998777 9999999999999999999999 89999876 567778876 666 899999 567888888
Q ss_pred HHHHHHH-----hhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----C--Ceec
Q 040324 325 ELIQYLK-----YNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----G--FEVL 393 (488)
Q Consensus 325 ~~~~~~~-----~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g--~~~~ 393 (488)
++++.+. ...+..++ ++||+.++++.++|+.+. .+++.++++++++++++.|+++ . +...
T Consensus 312 ~~~~~l~~~~~~~~~~~~t~--~~n~~~~~aa~aal~~~~-------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~ 382 (449)
T 2cjg_A 312 RVDEVADNVFAVPSRLNSTW--GGNLTDMVRARRILEVIE-------AEGLFERAVQHGKYLRARLDELAADFPAVVLDP 382 (449)
T ss_dssp GGGGSTTCTTTSTTSSCCSS--SSCHHHHHHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE
T ss_pred HHhhhhhhcccCCcccccCC--CCCHHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE
Confidence 8887532 22233344 489999999999999873 2467888999999999999865 2 2222
Q ss_pred CCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 394 GDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
. ..+.++++.+.......++++.|+++||.+.+.+ .+++||+|++.+|++|+++++++|+++++++
T Consensus 383 ~-~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 383 R-GRGLMCAFSLPTTADRDELIRQLWQRAVIVLPAG-------ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp E-EETTEEEEECSSHHHHHHHHHHHHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred e-eccEEEEEEECChHHHHHHHHHHHHCCeEEecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 2456777766554456689999999999998642 4789999999999999999999999998764
No 36
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=6.1e-36 Score=305.85 Aligned_cols=353 Identities=16% Similarity=0.132 Sum_probs=260.6
Q ss_pred cCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccc-cccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCCh
Q 040324 67 FGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSY-NYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL 145 (488)
Q Consensus 67 ~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~-~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~ 145 (488)
+|..+.++.|+++||.| |++||||+++ +...++|+||++.+|+.+++++... . . ..+..
T Consensus 25 ~~~~~~~~~g~~~~d~~---------------g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~-~---~~~~~ 84 (433)
T 1zod_A 25 EPMIIERAKGSFVYDAD---------------GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-L-F---SEMLS 84 (433)
T ss_dssp CSSCCCEEEBTEEECTT---------------CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-C-C---TTCCC
T ss_pred CCceEEEeecCEEEeCC---------------CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc-c-c---cccCC
Confidence 46678899999999988 9999999654 3356777789999999999988643 1 1 12345
Q ss_pred hhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhhhhhcc---cCCCcEEEEe-CCCchHHHHHHHhcC-----------Ce
Q 040324 146 ALHNELEECVARFVGK--PAAIVFGMGYVTNSSILPVL---MGKGSLIISD-SLNHNSIVNGARGSG-----------AT 208 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~~~~~~---~~~~~~Vl~~-~~~h~~~~~~~~~~g-----------~~ 208 (488)
+...++++.++++++. ++++++++|++|+..+++.+ .+ ++.|++. ..+|+.+......++ ..
T Consensus 85 ~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 163 (433)
T 1zod_A 85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTG-KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVG 163 (433)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHT-CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTT
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhC-CCeEEEECCCcCCCChhHHhhcCCccccccCCCCCC
Confidence 6778999999999974 56788889999997777653 34 4455554 456776665554431 12
Q ss_pred EEEee--------CC---------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHH
Q 040324 209 IRVFQ--------HN---------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICK 267 (488)
Q Consensus 209 v~~~~--------~~---------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~ 267 (488)
+..++ ++ |+++|++.+++. ++.++++|+++++++++|.+.+ +++|+++|+
T Consensus 164 ~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---------~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~ 234 (433)
T 1zod_A 164 SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ---------SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE 234 (433)
T ss_dssp EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH---------CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH
T ss_pred ceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc---------CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence 33332 23 378888888752 0125678889999999998766 999999999
Q ss_pred HcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCC
Q 040324 268 RYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSI 343 (488)
Q Consensus 268 ~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~ 343 (488)
+||++||+||+|+ +||++|.. ..+++++.| |++ ||||++|+ | |++++++++++.+.........+.++
T Consensus 235 ~~~~~li~DEv~~--~~g~~g~~~~~~~~~~~~---di~--s~sK~~~~-G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~ 306 (433)
T 1zod_A 235 ARGMLLILDEAQT--GVGRTGTMFACQRDGVTP---DIL--TLSKTLGA-GLPLAAIVTSAAIEERAHELGYLFYTTHVS 306 (433)
T ss_dssp HHTCEEEEECTTT--TTTTTSSSSTHHHHTCCC---SEE--EECHHHHT-TSSCEEEEECHHHHHHHHHTTCCCCCTTTT
T ss_pred HhCCEEEEecccc--CCCcCchHhHHhhcCCCC---CEE--EecccccC-CCCeeEEEEhHHHHHhhccCCCCCCCCCCc
Confidence 9999999999999 88888874 567778776 665 99999986 5 99999999999887643221123348
Q ss_pred CHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCCc--------chH
Q 040324 344 SPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYNP--------AKV 411 (488)
Q Consensus 344 ~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~--------~~~ 411 (488)
|++.++++.++|+.+.+ +++.++++++++++++.|+++ +........+.++++.+... ...
T Consensus 307 ~~~~~~a~~aal~~~~~-------~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~ 379 (433)
T 1zod_A 307 DPLPAAVGLRVLDVVQR-------DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLG 379 (433)
T ss_dssp CHHHHHHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHH
T ss_pred CHHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHH
Confidence 99999999999998742 346788888899998888774 32111123456777766421 236
Q ss_pred HHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 412 SSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 412 ~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
.++.+.|+++||.+.+.+. .. .++++||++++.+|++|+++++++|+++++++
T Consensus 380 ~~~~~~l~~~Gv~v~~~~~-~~--~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 380 AKITRECMNLGLSMNIVQL-PG--MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp HHHHHHHHHTTEECCEECC-TT--SCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEeccCC-CC--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999987432 11 24799999999999999999999999998764
No 37
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=2.4e-36 Score=306.01 Aligned_cols=350 Identities=16% Similarity=0.162 Sum_probs=270.2
Q ss_pred hhhhcccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccc---cccCCCCCCccchHHHHHHHHHcCCCCCC
Q 040324 61 NRVQDCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSY---NYLGFAAADEYCTPRVIDSLKKYSHSTCS 137 (488)
Q Consensus 61 ~~~~~~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~---~~lg~~~~~~~v~~a~~~~l~~~~~~~~~ 137 (488)
.+..+.++..+.++.|.+++|.+ |++||||+++ +++|+ +||.+.+++.+++++.....
T Consensus 15 ~~~~~~~~~~~~~~~g~~~~~~~---------------g~~~lD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~-- 75 (406)
T 4adb_A 15 IPVYAPAPFIPVRGEGSRLWDQQ---------------GKEYIDFAGGIAVNALGH--AHPELREALNEQASKFWHTG-- 75 (406)
T ss_dssp CSSCCCCSSCEEEEEBTEEEETT---------------CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCC--
T ss_pred hhhcCCCCceEEeeccCEEEeCC---------------CCEEEECCCchhhcccCC--CCHHHHHHHHHHHHhccccc--
Confidence 34445677788899999999998 9999999876 55554 57999999999998753222
Q ss_pred cccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccC-------CC-cEEEEeCC-CchHHHHHHHhcC--
Q 040324 138 SRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMG-------KG-SLIISDSL-NHNSIVNGARGSG-- 206 (488)
Q Consensus 138 ~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~-------~~-~~Vl~~~~-~h~~~~~~~~~~g-- 206 (488)
.. ...+...++++.++++++.++++++++|++|+..+++++.. ++ +.|++..+ +|+.........+
T Consensus 76 --~~-~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~ 152 (406)
T 4adb_A 76 --NG-YTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQP 152 (406)
T ss_dssp --TT-SCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCG
T ss_pred --CC-cCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCc
Confidence 11 24566799999999999998899999999999887777642 33 55555555 5555455555444
Q ss_pred ----------CeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCC----CChHHHHHHHHHcCcE
Q 040324 207 ----------ATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGEL----CKLPEIITICKRYKAY 272 (488)
Q Consensus 207 ----------~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~----~~l~~l~~l~~~~g~~ 272 (488)
..+..++++|+++|++.+++ ++.+|+++|+++.+|.+ .++++|+++|++||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------------~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~ 219 (406)
T 4adb_A 153 AYSQDFAPLPADIRHAAYNDINSASALIDD-------------STCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNAL 219 (406)
T ss_dssp GGTGGGCSCCSSEEEECTTCHHHHHTTCST-------------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCE
T ss_pred cccccCCCCCCCceEeCCCcHHHHHHHhcC-------------CeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 46778888999999887753 45677777888777754 3699999999999999
Q ss_pred EEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc--ccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHH
Q 040324 273 TYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY--GGYIAGSKELIQYLKYNCPAHLYATSISPPAAE 349 (488)
Q Consensus 273 li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~--Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~a 349 (488)
||+||+|+ +++++|.. ..+.+++.+ |++ ||||+++++ +|++++++++++.+....+..+++ .+++.++
T Consensus 220 li~De~~~--~~~~~g~~~~~~~~~~~~---d~~--t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 290 (406)
T 4adb_A 220 LIFDEVQT--GVGRTGELYAYMHYGVTP---DLL--TTAKALGGGFPVGALLATEECARVMTVGTHGTTYG--GNPLASA 290 (406)
T ss_dssp EEEECTTT--TTTTTSSSSHHHHHTCCC---SEE--EECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSST--TCHHHHH
T ss_pred EEEecccc--CCCccchhHHHHhcCCCC---CEE--EechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCC--CCHHHHH
Confidence 99999999 78888876 456677765 666 899999842 399999999998887655554554 8999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC----CeecCCCCCCeEEEEeCCcc--hHHHHHHHHHHCCc
Q 040324 350 QIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG----FEVLGDNDSPVMPIMVYNPA--KVSSFSRECLKQNV 423 (488)
Q Consensus 350 a~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~Gi 423 (488)
++.++|+.+. .+++.++++++.+++++.|++++ ........+.++++.+.... ...++.+.|+++||
T Consensus 291 a~~~~l~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi 363 (406)
T 4adb_A 291 VAGKVLELIN-------TPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGV 363 (406)
T ss_dssp HHHHHHHHHS-------SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCc
Confidence 9999999872 26788899999999999998762 11111223567777776532 57789999999999
Q ss_pred eEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 424 AIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 424 ~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
.+.+.+ .+++||+++..+|++|+++++++|+++++++.
T Consensus 364 ~v~~~~-------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 364 MVLIAG-------GNVVRFAPALNVSEEEVTTGLDRFAAACEHFV 401 (406)
T ss_dssp ECEESS-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecC-------CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 998622 47899999999999999999999999998764
No 38
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=5e-36 Score=308.04 Aligned_cols=351 Identities=15% Similarity=0.121 Sum_probs=264.3
Q ss_pred cCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCCh
Q 040324 67 FGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL 145 (488)
Q Consensus 67 ~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~ 145 (488)
.+..+.+++|+++||.| |++|||++++.+ ..++++||++.+|+.+++++.+ . ++...+..
T Consensus 32 ~~~~~~~~~g~~~~d~~---------------g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~---~~~~~~~~ 92 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDK---------------GRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD-Y---SPGFQYGH 92 (449)
T ss_dssp SCCCEEEEEBTEEEETT---------------CCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS-C---CCSSSCCC
T ss_pred CCceEEeeecCEEEECC---------------CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC-C---ccccccCC
Confidence 56788999999999998 999999975532 3455558999999999998754 1 11113456
Q ss_pred hhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhhhhhcccC--------CCcEEEE-eCCCchHHHHHHHhcCC-------
Q 040324 146 ALHNELEECVARFVGK--PAAIVFGMGYVTNSSILPVLMG--------KGSLIIS-DSLNHNSIVNGARGSGA------- 207 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~~~~~~~~--------~~~~Vl~-~~~~h~~~~~~~~~~g~------- 207 (488)
+...++++.++++++. ++++++++|++|+..+++++.. +++.|++ +..+|+.+..++...+.
T Consensus 93 ~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 172 (449)
T 3a8u_X 93 PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLF 172 (449)
T ss_dssp HHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhcccc
Confidence 7778999999999954 5688888999999877776542 5566666 45566666666665542
Q ss_pred -----eEEEee--C----C----C--------HHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hH
Q 040324 208 -----TIRVFQ--H----N----T--------PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LP 260 (488)
Q Consensus 208 -----~v~~~~--~----~----d--------~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~ 260 (488)
.+..++ . + | +++|++.+++.. +.++++|+++++++++|.+.+ ++
T Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~---------~~~~~~vi~~p~~~~tG~~~~~~~~l~ 243 (449)
T 3a8u_X 173 GQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD---------ASNIAAVFVEPLAGSAGVLVPPEGYLK 243 (449)
T ss_dssp CCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC---------GGGEEEEEECSSBTTTTCBCCCTTHHH
T ss_pred CCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC---------CCCEEEEEEcCccCCCCCccCCHHHHH
Confidence 233332 1 1 5 888888887521 125678899999999998888 99
Q ss_pred HHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc---ccEEEeCHHHHHHHHhhCC-
Q 040324 261 EIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY---GGYIAGSKELIQYLKYNCP- 335 (488)
Q Consensus 261 ~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~---Gg~i~~~~~~~~~~~~~~~- 335 (488)
+|+++|++||++||+||+|+ +||++|.. ..+++++.| |++ |+||+++++ .|++++++++++.+.....
T Consensus 244 ~l~~l~~~~~~~li~Dev~~--~~g~~g~~~~~~~~~~~~---di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~ 316 (449)
T 3a8u_X 244 RNREICNQHNILLVFDEVIT--GFGRTGSMFGADSFGVTP---DLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTP 316 (449)
T ss_dssp HHHHHHHHHTCEEEEECTTT--TTTTTSSSSHHHHHTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSC
T ss_pred HHHHHHHHhCCEEEEecccc--CccccCcchhhhhcCCCC---CEE--EEcccccCCCCceEEEEECHHHHHHhhccCcc
Confidence 99999999999999999998 78888864 567778776 666 999999864 4888899999998876411
Q ss_pred ------CCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC-Ceec--CCCCCCeEEEEeC
Q 040324 336 ------AHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG-FEVL--GDNDSPVMPIMVY 406 (488)
Q Consensus 336 ------~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~--~~~~~~~~~~~~~ 406 (488)
...++.++|++.++++.++|+.+. .+++.++++++.+++++.|++++ ++.. ....+.++++.+.
T Consensus 317 ~~~~~~~~~~t~~~~~~~~aa~~aal~~~~-------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~ 389 (449)
T 3a8u_X 317 EYAVEFPHGYTYSAHPVACAAGLAALCLLQ-------KENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIA 389 (449)
T ss_dssp TTSCSSCCCCTTTTCHHHHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEEC
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEe
Confidence 112333489999999999999873 23578889999999999998753 3221 1234578888876
Q ss_pred Ccc-----hHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 407 NPA-----KVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 407 ~~~-----~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
... ...++.+.|+++||.+.+. + +++||+|++.+|++|+++++++|+++++++
T Consensus 390 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 390 PRDGDAIVRPFEAGMALWKAGFYVRFG-------G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp CBTTBSSHHHHHHHHHHHHHTEECEEE-------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cCcccccccHHHHHHHHHHCCcEEecC-------C-CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 432 2236899999999999863 2 689999999999999999999999998764
No 39
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-36 Score=309.36 Aligned_cols=339 Identities=18% Similarity=0.191 Sum_probs=256.7
Q ss_pred cCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCCh
Q 040324 67 FGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL 145 (488)
Q Consensus 67 ~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~ 145 (488)
+|..+.+++|+++||.| |++||||+++.+ ..++|+||.+.+|+.+++++ +..++ +..
T Consensus 34 ~p~~~~~~~g~~~~d~~---------------g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~------~~~ 91 (424)
T 2e7u_A 34 TPPFLVRGEGAYVWDAD---------------GNRYLDYVMSWGPLILGHAHPKVLARVRETLER-GLTFG------APS 91 (424)
T ss_dssp CCCCEEEEEBTEEEETT---------------CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT-CSCCS------SCC
T ss_pred CCeeEEeeecCEEEeCC---------------CCEEEEccccccccccCCCCHHHHHHHHHHHHh-CCCCC------CCC
Confidence 46778899999999998 999999976532 34555689999999999987 33221 356
Q ss_pred hhHHHHHHHHHHHh-CCCCeEEeCCcHHHHhhhhhc---ccCCCcEEEEeCCCchHHHHHHHh-------------cC--
Q 040324 146 ALHNELEECVARFV-GKPAAIVFGMGYVTNSSILPV---LMGKGSLIISDSLNHNSIVNGARG-------------SG-- 206 (488)
Q Consensus 146 ~~~~~l~~~la~~~-g~~~~i~~~sGs~a~~~~~~~---~~~~~~~Vl~~~~~h~~~~~~~~~-------------~g-- 206 (488)
+...++++.+++++ +.++++++++|++|+..+++. +++++++|+.+..+|+.+...... .|
T Consensus 92 ~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~ 171 (424)
T 2e7u_A 92 PLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVP 171 (424)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCC
Confidence 67789999999999 566788899999999777764 677766666666666644322211 12
Q ss_pred ----CeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEcc
Q 040324 207 ----ATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDEA 278 (488)
Q Consensus 207 ----~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE~ 278 (488)
..+..++++|+++|++.+++.. .++++|+++|+++++|.+.+ +++|+++ ++||++||+||+
T Consensus 172 ~~~~~~~~~~~~~d~~~le~~l~~~~----------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv 240 (424)
T 2e7u_A 172 EEYAKLTLVLEYNDPEGLREVLKRRG----------EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEV 240 (424)
T ss_dssp HHHHTTEEEECTTCHHHHHHHHHHHG----------GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECT
T ss_pred CccCCceEeCCCCCHHHHHHHHHhCC----------CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecC
Confidence 2467788899999999997521 25778999999999998887 9999999 999999999999
Q ss_pred ccccccCCCCCC-cchhcCCCCCCccEEEcccccccCC--cccEEEeCHHHHHHHHhhC---CCCcccCCCCHHHHHHHH
Q 040324 279 HSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGS--YGGYIAGSKELIQYLKYNC---PAHLYATSISPPAAEQII 352 (488)
Q Consensus 279 ~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~--~Gg~i~~~~~~~~~~~~~~---~~~~~~~~~~p~~~aa~~ 352 (488)
|+ ++ ++|.. ..+++++.| |++ ||||++|+ ++|++++++++++.+.... +..++ ++||+.++++.
T Consensus 241 ~~--g~-~~g~~~~~~~~~~~~---di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~ 310 (424)
T 2e7u_A 241 MT--GF-RLAFGGATELLGLKP---DLV--TLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTL--SGNPLAMAAGL 310 (424)
T ss_dssp TT--TT-TSSTTHHHHHHTCCC---SEE--EECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTT--CSCHHHHHHHH
T ss_pred cc--cc-ccchhHHHHHhCCCc---chh--hhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCC--CCCHHHHHHHH
Confidence 99 77 66654 567788876 665 99999986 3499999999988776522 22233 48999999999
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCC-------------cchHHHHH
Q 040324 353 SAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYN-------------PAKVSSFS 415 (488)
Q Consensus 353 a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 415 (488)
++|+.+.+ .+++.++++++++++++.|+++ ++.......+.++++.+.. .....++.
T Consensus 311 aal~~~~~------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (424)
T 2e7u_A 311 ATLELLEE------NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFF 384 (424)
T ss_dssp HHHHHHHH------CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHH
Confidence 99998731 1568888999999999999875 5532122346788887754 12355799
Q ss_pred HHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 416 RECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 416 ~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
+.|+++||.+.+.+ ..++| +++.+|++|+++++++|+++
T Consensus 385 ~~l~~~Gv~v~~~~-------~~~~~--~~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 385 HGLLDRGIYWPPSN-------FEAAF--LSVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp HHHHTTTEECCSSS-------SSCEE--CCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEeccC-------CCceE--eeccCCHHHHHHHHHHHHHh
Confidence 99999999998532 12344 56799999999999999875
No 40
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=1.2e-35 Score=302.85 Aligned_cols=351 Identities=16% Similarity=0.184 Sum_probs=260.4
Q ss_pred cCCCccCCCCceEEEeeccccCCcccccccCCcceeEEecccc-ccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCCh
Q 040324 67 FGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYN-YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL 145 (488)
Q Consensus 67 ~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~-~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~ 145 (488)
+|..+.+++|+++||.+ |++||||+++. ...+++++|.+.+++.+++++.+... ..++..
T Consensus 23 ~~~~~~~~~g~~~~d~~---------------g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~----~~~~~~ 83 (426)
T 1sff_A 23 HPIFADRAENCRVWDVE---------------GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC----FQVLAY 83 (426)
T ss_dssp EEEEEEEEEBTEEEETT---------------CCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCC----TTTEEC
T ss_pred CCceEEecccCEEEeCC---------------CCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCcc----ccccCC
Confidence 45567889999999988 99999997654 23445567899999999987754322 123456
Q ss_pred hhHHHHHHHHHHHh-C-C-CCeEEeCCcHHHHhhhhh---cccCCCcEEEEeCCCchHHHHHHHhcCCe-----------
Q 040324 146 ALHNELEECVARFV-G-K-PAAIVFGMGYVTNSSILP---VLMGKGSLIISDSLNHNSIVNGARGSGAT----------- 208 (488)
Q Consensus 146 ~~~~~l~~~la~~~-g-~-~~~i~~~sGs~a~~~~~~---~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~----------- 208 (488)
+...+|++.|++++ + . ++++++++|++++..+++ .+.+++++|+.+..+|+.+...+...|..
T Consensus 84 ~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~ 163 (426)
T 1sff_A 84 EPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMP 163 (426)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCC
T ss_pred HHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccCCCC
Confidence 77799999999999 5 3 456777788888877766 67777755444555666666667766543
Q ss_pred --EEEeeC-----C-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcE
Q 040324 209 --IRVFQH-----N-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAY 272 (488)
Q Consensus 209 --v~~~~~-----~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~ 272 (488)
+..++. + |+++|++.+++.. .+.++++|+++++++++|.+.+ +++|+++|++||++
T Consensus 164 ~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~--------~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~ 235 (426)
T 1sff_A 164 GHVYRALYPCPLHGISEDDAIASIHRIFKNDA--------APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIM 235 (426)
T ss_dssp SSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC--------CGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCE
T ss_pred CCcEEeCCCccccccchHHHHHHHHHHHHhcc--------CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 555553 2 6778888776410 0125668888998888997777 99999999999999
Q ss_pred EEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHH
Q 040324 273 TYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAA 348 (488)
Q Consensus 273 li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 348 (488)
||+||+|+ +++++|.. ..+.+++.+ |++ ||||++|+ | ||+++++++++.+.......++ +.+++.+
T Consensus 236 li~De~~~--~~~~~g~~~~~~~~~~~~---di~--s~sK~~~~-GlriG~~~~~~~~~~~l~~~~~~~~~--~~~~~~~ 305 (426)
T 1sff_A 236 LIADEVQS--GAGRTGTLFAMEQMGVAP---DLT--TFAKSIAG-GFPLAGVTGRAEVMDAVAPGGLGGTY--AGNPIAC 305 (426)
T ss_dssp EEEECTTT--TTTTTSSSSGGGGTTSCC---SEE--EECGGGGT-SSCCEEEEEEHHHHTTSCTTSBCCSS--SSCHHHH
T ss_pred EEEechhh--ccCcccchhhhhhcCCCC---CEE--EEcccccC-CCceEEEEEcHHHHhhhccCCcCcCC--CCCHHHH
Confidence 99999999 78888765 345666554 665 99999987 6 9999999988776543333333 4899999
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC--Ce---ecCCCCCCeEEEEeCC--------cchHHHHH
Q 040324 349 EQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG--FE---VLGDNDSPVMPIMVYN--------PAKVSSFS 415 (488)
Q Consensus 349 aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~---~~~~~~~~~~~~~~~~--------~~~~~~~~ 415 (488)
+++.++|+.+.. +++.++++++.+++++.|++++ ++ ... ..+.++++.+.. .....++.
T Consensus 306 ~a~~aal~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (426)
T 1sff_A 306 VAALEVLKVFEQ-------ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVR-GLGAMIAIELFEDGDHNKPDAKLTAEIV 377 (426)
T ss_dssp HHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEE-EETTEEEEEEBGGGCTTSBCHHHHHHHH
T ss_pred HHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-EEEEEEEEEEecCccccCCChHHHHHHH
Confidence 999999998742 3467788888889988887742 22 122 236788887742 23466899
Q ss_pred HHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 416 RECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 416 ~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+.|+++||.+.+... ..+++||++++.+|++|+++++++|+++++++
T Consensus 378 ~~l~~~gi~v~~~~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 378 ARARDKGLILLSCGP-----YYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp HHHHHTTEECEEEST-----TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEecCCC-----CCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999997432 14789999999999999999999999998765
No 41
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.7e-35 Score=299.85 Aligned_cols=344 Identities=15% Similarity=0.156 Sum_probs=253.6
Q ss_pred cCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCC-CccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 67 FGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAA-DEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 67 ~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~-~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
+|..+.++.|+++||.+ |++||||+++.+ ..++++ ||.+.+|+.+++++... ++.+ .+.
T Consensus 24 ~~~~~~~~~g~~~~d~~---------------g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-~~~~---~~~ 84 (419)
T 2eo5_A 24 FPLVIDHGEGVWIYDVD---------------GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-AAAN---DFY 84 (419)
T ss_dssp CCCCEEEEEBTEEEETT---------------SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-CSCS---CSC
T ss_pred CCceEEeeecCEEEECC---------------CCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-cccc---ccC
Confidence 56678899999999988 999999976643 356666 79999999999987532 2211 134
Q ss_pred hhhHHHHHHHHHHHhCCC---CeEEeCCcHHHHhhhhhcccC-CCcEEEEeCC-CchHHHHHHHhcC-------------
Q 040324 145 LALHNELEECVARFVGKP---AAIVFGMGYVTNSSILPVLMG-KGSLIISDSL-NHNSIVNGARGSG------------- 206 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~~~~~~~~~-~~~~Vl~~~~-~h~~~~~~~~~~g------------- 206 (488)
.+...++++.++++++.+ +++++++|++++..+++.+.. +++.|++..+ +|+.+......++
T Consensus 85 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~ 164 (419)
T 2eo5_A 85 NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFM 164 (419)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCC
T ss_pred CHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCC
Confidence 566789999999999863 577778889999777765432 2566666654 5666665554433
Q ss_pred CeEEEeeCCC---------------------HHHHH-HHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hH
Q 040324 207 ATIRVFQHNT---------------------PSHLE-EVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LP 260 (488)
Q Consensus 207 ~~v~~~~~~d---------------------~~~Le-~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~ 260 (488)
..+..+++++ +++|+ +.+++. ..+.++++|+++++++++|.+.+ ++
T Consensus 165 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~--------~~~~~~~~vi~~p~~~~tG~~~~~~~~l~ 236 (419)
T 2eo5_A 165 PGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNL--------VPPEEVAGIFFEPIQGEGGYVIPPKNFFA 236 (419)
T ss_dssp TTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHT--------CCGGGEEEEEECSSBTTTTSBCCCTTHHH
T ss_pred CCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhc--------cCCCCEEEEEEeCccCCCCCccCCHHHHH
Confidence 2456666543 45676 666531 00125678889999988998776 99
Q ss_pred HHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc-c--cEEEeCHHHHHHHHhhCCC
Q 040324 261 EIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY-G--GYIAGSKELIQYLKYNCPA 336 (488)
Q Consensus 261 ~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~-G--g~i~~~~~~~~~~~~~~~~ 336 (488)
+|+++|++||++||+||+|+ +||++|.. ..+++++.| |++ ||||++|++ - ||++++++++ .+ ...+.
T Consensus 237 ~l~~l~~~~~~~li~DE~~~--~~g~~g~~~~~~~~~~~~---d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~ 307 (419)
T 2eo5_A 237 ELQKLAKKYGILLVDDEVQM--GLGRTGKLFAIENFNTVP---DVI--TLAKALGGGIMPIGATIFRKDLD-FK-PGMHS 307 (419)
T ss_dssp HHHHHHHHHTCEEEEECTTT--TTTTTSSSSGGGGGTCCC---SEE--EECGGGGTTTSCCEEEEEEGGGC-CC------
T ss_pred HHHHHHHHcCCEEEEecccc--CCccCcchhhHHhcCCCC---CEE--EecccccCCccceEEEEEchHhh-cC-CcccC
Confidence 99999999999999999999 88888764 556677766 665 899999862 1 8999998877 65 32333
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCCc-chHHHHH
Q 040324 337 HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNP-AKVSSFS 415 (488)
Q Consensus 337 ~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 415 (488)
.++ +.|+++++++.++|+.+. ++.+++++++++|.+.|+++ +... ...+.++++.+... .... ++
T Consensus 308 ~t~--~~n~~~~~aa~aal~~~~---------~~~~~~~~~~~~l~~~L~~~-~~~~-~~~g~~~~i~~~~~~~~~~-~~ 373 (419)
T 2eo5_A 308 NTF--GGNALACAIGSKVIDIVK---------DLLPHVNEIGKIFAEELQGL-ADDV-RGIGLAWGLEYNEKKVRDR-II 373 (419)
T ss_dssp -CC--CCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHTTS-SSEE-EEETTEEEEECSCHHHHHH-HH
T ss_pred CCC--CCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHh-hhhe-EeeeEEEEEEEecCccHHH-HH
Confidence 334 489999999999999762 27889999999999999886 3222 23356777766322 2345 89
Q ss_pred HHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 416 RECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 416 ~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+.|+++||.+.+.+ .+++||++++.+|++|+++++++|+++++++
T Consensus 374 ~~l~~~Gv~v~~~~-------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 374 GESFKRGLLLLPAG-------RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp HHHHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCEEecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999643 4789999999999999999999999998764
No 42
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=5.9e-35 Score=298.24 Aligned_cols=345 Identities=13% Similarity=0.074 Sum_probs=256.8
Q ss_pred ccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHH
Q 040324 71 LSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHN 149 (488)
Q Consensus 71 i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~ 149 (488)
+.++.|+++||.| |++|||++++.+ ..+++.+|.+.+|+.+++++...... +. ...+...
T Consensus 29 ~~~~~g~~~~d~~---------------g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~-~~---~~~~~~~ 89 (429)
T 1s0a_A 29 VVSAEGCELILSD---------------GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMF-GG---ITHAPAI 89 (429)
T ss_dssp EEEEEBTEEEETT---------------SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCC-SS---EECHHHH
T ss_pred EEeeeeeEEEeCC---------------CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccc-cc---cCCHHHH
Confidence 6789999999988 999999976642 34555689999999999988643211 11 2345668
Q ss_pred HHHHHHHHHhC--CCCeEEeCCcHHHHhhhhhccc---C----CCcEEEEeCC-CchHHHHHHHhcC-------------
Q 040324 150 ELEECVARFVG--KPAAIVFGMGYVTNSSILPVLM---G----KGSLIISDSL-NHNSIVNGARGSG------------- 206 (488)
Q Consensus 150 ~l~~~la~~~g--~~~~i~~~sGs~a~~~~~~~~~---~----~~~~Vl~~~~-~h~~~~~~~~~~g------------- 206 (488)
++++.++++++ .++++++++|++++..+++.+. + +++.|++..+ +|+.........+
T Consensus 90 ~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~ 169 (429)
T 1s0a_A 90 ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYL 169 (429)
T ss_dssp HHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTS
T ss_pred HHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCC
Confidence 99999999995 4568888899999977766442 3 4677777765 5665554544332
Q ss_pred --CeEEEee---------CCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCc-CCCCCCCCC----hHHHHHHHHHcC
Q 040324 207 --ATIRVFQ---------HNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGI-YSMEGELCK----LPEIITICKRYK 270 (488)
Q Consensus 207 --~~v~~~~---------~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v-~s~~G~~~~----l~~l~~l~~~~g 270 (488)
...+.++ +.|+++|++.+++. +.++++|+++++ ++++|.+.+ +++|+++|++||
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~----------~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~ 239 (429)
T 1s0a_A 170 PENLFAPAPQSRMDGEWDERDMVGFARLMAAH----------RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG 239 (429)
T ss_dssp CCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH----------TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred CCceEeCCCcccccccchHHHHHHHHHHHHhC----------CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 3344443 24788999888752 125678889999 889998776 999999999999
Q ss_pred cEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc---ccEEEeCHHHHHHHHhhC-CC--CcccCCC
Q 040324 271 AYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY---GGYIAGSKELIQYLKYNC-PA--HLYATSI 343 (488)
Q Consensus 271 ~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~---Gg~i~~~~~~~~~~~~~~-~~--~~~~~~~ 343 (488)
++||+||+|+ +||++|.. ..+++++.| |++ ||||+++++ .|++++++++++.+.... .. ...+.+.
T Consensus 240 ~~li~De~~~--~~g~~g~~~~~~~~~~~~---d~~--t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~ 312 (429)
T 1s0a_A 240 ILLIADEIAT--GFGRTGKLFACEHAEIAP---DIL--CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMG 312 (429)
T ss_dssp CEEEEECTTT--TTTTTSSSSGGGGGTCCC---SEE--EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTT
T ss_pred CEEEEeehhh--CCcccchHHHhhhcCCCC---CEE--EecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCC
Confidence 9999999998 78888764 556677765 666 899999853 299999999998887531 10 1123348
Q ss_pred CHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCCcchHHHHHHHHH
Q 040324 344 SPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYNPAKVSSFSRECL 419 (488)
Q Consensus 344 ~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 419 (488)
|++.++++.++|+.+.+ +++.++++++++++++.|+++ ++.... ..+.++++.+.......++.+.|+
T Consensus 313 n~~~~~a~~aal~~~~~-------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~l~~~l~ 384 (429)
T 1s0a_A 313 NPLACAAANASLAILES-------GDWQQQVADIEVQLREQLAPARDAEMVADVR-VLGAIGVVETTHPVNMAALQKFFV 384 (429)
T ss_dssp CHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEE-EETTEEEEEESSCBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEE-EeeEEEEEEECCcccHHHHHHHHH
Confidence 99999999999998742 357788889999999999875 222222 235677777765445678999999
Q ss_pred HCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 420 KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 420 ~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
++||.+.+. .+++||+++..+|++|+++++++|+++++++
T Consensus 385 ~~Gi~v~~~--------~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 385 EQGVWIRPF--------GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp HTTEECCCB--------TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred HCCCEEecc--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999741 2689999999999999999999999987543
No 43
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=6.2e-36 Score=302.28 Aligned_cols=342 Identities=18% Similarity=0.228 Sum_probs=264.3
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccc---cccCCCCCCccchHHHHHHHHHcCCCCCCcccCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSY---NYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDG 142 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~---~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~ 142 (488)
.+|..+.++.|+++||.+ |++||||+++ +++|+ ++|.+.+++.++++++.... + .
T Consensus 21 ~~~~~~~~~~g~~~~d~~---------------g~~~ld~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~---~-~- 78 (397)
T 2ord_A 21 RFPATFVYGKGSWIYDEK---------------GNAYLDFTSGIAVNVLGH--SHPRLVEAIKDQAEKLIHCS---N-L- 78 (397)
T ss_dssp CCSCEEEEEEBTEEEETT---------------CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCC---T-T-
T ss_pred CCCceEEeeecCEEEECC---------------CCEEEECCccccccccCC--CCHHHHHHHHHHHHhcccCc---c-c-
Confidence 567778899999999988 9999999876 55555 47899999999998864422 1 1
Q ss_pred CChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhccc--------CCCcEEEEeCCCchHHHHHHHhcCCe------
Q 040324 143 GTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLM--------GKGSLIISDSLNHNSIVNGARGSGAT------ 208 (488)
Q Consensus 143 g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~--------~~~~~Vl~~~~~h~~~~~~~~~~g~~------ 208 (488)
...+...++++.+++++|.++++++++|++|+..+++++. +++++|+.+..+|+.+...++..|.+
T Consensus 79 ~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~ 158 (397)
T 2ord_A 79 FWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPF 158 (397)
T ss_dssp SEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGG
T ss_pred cCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhcccc
Confidence 2456779999999999998888999999999987777664 23345555666777777677777776
Q ss_pred ------EEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCC-C---CChHHHHHHHHHcCcEEEEEcc
Q 040324 209 ------IRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE-L---CKLPEIITICKRYKAYTYLDEA 278 (488)
Q Consensus 209 ------v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~-~---~~l~~l~~l~~~~g~~li~DE~ 278 (488)
+..++++|+++|++.+++ ++.+|+++++++++|. + .++++|+++|++||++||+||+
T Consensus 159 ~p~~~~~~~~~~~d~~~l~~~l~~-------------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~ 225 (397)
T 2ord_A 159 EPLVPGFEYFEFNNVEDLRRKMSE-------------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEV 225 (397)
T ss_dssp CSCCTTEEEECTTCHHHHHHHCCT-------------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCCCeeEecCCCHHHHHHHhhc-------------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 788888999999888753 4567888899999998 3 4699999999999999999999
Q ss_pred ccccccCCCCCCc-chhcCCCCCCccEEEcccccccCCc--ccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHH
Q 040324 279 HSIGAVGKTGRGV-CELLGVDTSDVDIMMGTFSKSFGSY--GGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAI 355 (488)
Q Consensus 279 ~s~g~~g~~g~~~-~~~~~v~p~~~di~~~t~sK~~g~~--Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L 355 (488)
|+ +++++|+.. .+.+++.+ |++ ||||+++++ .|+++++++++ .+.......++ +.+++.++++.++|
T Consensus 226 ~~--~~~~~g~~~~~~~~~~~~---d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~--~~~~~~~~a~~~~l 295 (397)
T 2ord_A 226 QC--GMGRTGKLFAYQKYGVVP---DVL--TTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTF--GGNPLACRAGVTVI 295 (397)
T ss_dssp TT--TTTTTSSSSHHHHHTCCC---SEE--EECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSS--TTCHHHHHHHHHHH
T ss_pred cc--CCccCccchhhhhhCCCC---Cee--eeccccCCCcCeEEEEEchHhc-ccCCCCcCCCC--CCCHHHHHHHHHHH
Confidence 98 788887653 45566654 665 899999842 28888888776 54432333333 48999999999999
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC--CCeec--CCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCC
Q 040324 356 QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM--GFEVL--GDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFP 431 (488)
Q Consensus 356 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~ 431 (488)
+.+.. +++.++++++.+++.+.|+++ +++.. ....+.++++.+.......++.+.|+++||.+.+.+
T Consensus 296 ~~~~~-------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~-- 366 (397)
T 2ord_A 296 KELTK-------EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAG-- 366 (397)
T ss_dssp HHHTS-------TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEET--
T ss_pred HHHHh-------CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHHHHHHHHHCCCEEccCC--
Confidence 98731 457788899999999999876 34321 123457777777654457789999999999998632
Q ss_pred CccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 432 ATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 432 ~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
.+.+||+++..+|++|+++++++|++++++
T Consensus 367 -----~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 367 -----NNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp -----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 478999999899999999999999998764
No 44
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=8e-35 Score=294.79 Aligned_cols=339 Identities=12% Similarity=0.055 Sum_probs=260.3
Q ss_pred eeEEeccccccCCCCCCccchHHHHHHHHHcCC-CCCCcccCCCChhhHHHHHHHHHHHhCC-----CCeEEeCCcHHHH
Q 040324 101 RCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSH-STCSSRVDGGTLALHNELEECVARFVGK-----PAAIVFGMGYVTN 174 (488)
Q Consensus 101 ~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~g~-----~~~i~~~sGs~a~ 174 (488)
++|||+++++.+++ .+|.+.+|+.+++++.+. .+. ...|..+..+++++.+++++|. +.++++++|++++
T Consensus 40 ~~id~~~g~~~~~~-~~~~v~~a~~~~~~~~~~~~y~---~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~ 115 (407)
T 3nra_A 40 RPVDFSHGDVDAHE-PTPGAFDLFSAGVQSGGVQAYT---EYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL 115 (407)
T ss_dssp CCEETTSCCTTTSC-CCTTHHHHHHHHHHHTHHHHSC---CTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred ceeeecCcCCCCCC-CcHHHHHHHHHHHhcCCCCCcC---CCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence 59999998888766 458999999999986422 122 1225677778888888888886 4677777788888
Q ss_pred hhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 175 SSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-----------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 175 ~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
..++.++.++++.|+++.++|.++...++..|++++.++++ |+++|++.+++ ..+++
T Consensus 116 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------------~~~~v 183 (407)
T 3nra_A 116 FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------------GARVF 183 (407)
T ss_dssp HHHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT------------TCCEE
T ss_pred HHHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh------------CCcEE
Confidence 88888899999999999999999999999999999999872 89999998875 14444
Q ss_pred EEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCC--CCCCccEEEcccccccCCcc-
Q 040324 244 VVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGV--DTSDVDIMMGTFSKSFGSYG- 317 (488)
Q Consensus 244 vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v--~p~~~di~~~t~sK~~g~~G- 317 (488)
++ ..+.+++|.+.+ +++|+++|++||++||+||+|+ .+..+|........+ ...+.++++.||||++|.+|
T Consensus 184 ~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~--~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 260 (407)
T 3nra_A 184 LF-SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS--RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGY 260 (407)
T ss_dssp EE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT--TSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGG
T ss_pred EE-cCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccc--ccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCee
Confidence 44 455889999988 9999999999999999999999 444444432222222 12456788999999999767
Q ss_pred --cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecC
Q 040324 318 --GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLG 394 (488)
Q Consensus 318 --g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 394 (488)
||+++++++++.+......++++ .+++.++++.++|+. ..+..++.+++++++.+++++.|+++ ++.+..
T Consensus 261 r~G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 333 (407)
T 3nra_A 261 RLGVAFGSRAIIARMEKLQAIVSLR--AAGYSQAVLRGWFDE-----APGWMEDRIARHQAIRDELLHVLRGCEGVFART 333 (407)
T ss_dssp CCEEEEECHHHHHHHHHHHHHHTSS--SCHHHHGGGGGTTCC-----CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCC
T ss_pred eEEEEEcCHHHHHHHHHHHhhhccC--CChHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHhcCCCceecc
Confidence 99999999999887665543443 677766665555542 12356778889999999999999988 787766
Q ss_pred CCCCCeEEEEeCC-cchHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 395 DNDSPVMPIMVYN-PAKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 395 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
+.++.++++.+.. .....++.+.|+++ ||.+.+... +.+.+.+++||+++ .|+++|++++++|+++++++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 334 PQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTE-FSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp CSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGG-TCTTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHHB
T ss_pred CCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchh-hCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 6666777666654 34677899999875 999997432 23445689999986 499999999999999998763
No 45
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=5.3e-35 Score=300.72 Aligned_cols=342 Identities=18% Similarity=0.191 Sum_probs=246.9
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.++.|+++||.| |++||||+++.+ ..++|+||.+.+|+.+++++. ..+ .+.
T Consensus 38 ~~p~~~~~~~G~~~~d~~---------------g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~------~~~ 95 (453)
T 2cy8_A 38 PHGLFISDAQGVHKTDVD---------------GNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG-VQY------AAS 95 (453)
T ss_dssp SCCCCEEEEEBTEEEETT---------------CCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT-CSS------CSS
T ss_pred CCCceEEEeecCEEEECC---------------CCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC-CCC------CCC
Confidence 457778899999999998 999999976522 335556899999999999773 222 134
Q ss_pred hhhHHHHHHHHHHHh-CCCCeEEeCCcHHHHhhhhhc---ccCCCcEEEEeCCCchHHHHHHHh----------cCC---
Q 040324 145 LALHNELEECVARFV-GKPAAIVFGMGYVTNSSILPV---LMGKGSLIISDSLNHNSIVNGARG----------SGA--- 207 (488)
Q Consensus 145 ~~~~~~l~~~la~~~-g~~~~i~~~sGs~a~~~~~~~---~~~~~~~Vl~~~~~h~~~~~~~~~----------~g~--- 207 (488)
.+...++++.+++.+ +.++++++++|++|+..+++. +++++++|+++..+|+.+...... .|.
T Consensus 96 ~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~ 175 (453)
T 2cy8_A 96 HPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPE 175 (453)
T ss_dssp CHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC----------------------------
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCcc
Confidence 555667777777766 456788899999999887776 777776666665666554322211 122
Q ss_pred ---eEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEcccc
Q 040324 208 ---TIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDEAHS 280 (488)
Q Consensus 208 ---~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE~~s 280 (488)
.+..++++|+++|++++++.. .++++|+++++++++|.+.+ +++|+++|++||++||+||+|+
T Consensus 176 ~~~~~~~~~~~d~~~le~~l~~~~----------~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 245 (453)
T 2cy8_A 176 TTANTLLIRPDDIEGMREVFANHG----------SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS 245 (453)
T ss_dssp CGGGEEEECTTCHHHHHHHHHHHG----------GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccCceeecCCCCHHHHHHHHHhcC----------CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 356677889999999997531 15678999999988898877 9999999999999999999999
Q ss_pred ccccCCCCCC-cchhcCCCCCCccEEEcccccccCC--cccEEEeCHHHHHHHHh---h--CCCCcccCCCCHHHHHHHH
Q 040324 281 IGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGS--YGGYIAGSKELIQYLKY---N--CPAHLYATSISPPAAEQII 352 (488)
Q Consensus 281 ~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~--~Gg~i~~~~~~~~~~~~---~--~~~~~~~~~~~p~~~aa~~ 352 (488)
++ ++|.. ..+++++.| |++ ||||++++ ++|++++++++++.+.. . .+..++ ++||+.++++.
T Consensus 246 --g~-~~g~~~~~~~~~~~~---di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~--~~n~~~~aa~~ 315 (453)
T 2cy8_A 246 --GF-RVGNHGMQALLDVQP---DLT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTF--TGNPITAAAAI 315 (453)
T ss_dssp --TT-TTCTTHHHHHHTCCC---SEE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC---------C--CCCHHHHHHHH
T ss_pred --cc-ccCchhhhHHhCCCC---cEE--EEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCC--CCCHHHHHHHH
Confidence 77 66654 566778876 665 99999975 34999999999887754 1 122233 48999999999
Q ss_pred HHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCC-----c--------------
Q 040324 353 SAIQV-VIGEDGSCRGAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYN-----P-------------- 408 (488)
Q Consensus 353 a~L~~-i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-----~-------------- 408 (488)
++|+. + . +++.++++++++++++.|+++ ++....+..+.++++.+.. .
T Consensus 316 aal~~~~-~-------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (453)
T 2cy8_A 316 AAIDTIL-E-------DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDV 387 (453)
T ss_dssp HHHHHHH-H-------TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCH
T ss_pred HHHHHHh-h-------hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccH
Confidence 99987 5 2 246677888888888888764 5432223456788888764 1
Q ss_pred chHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 409 AKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 409 ~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
....++.+.|+++||.+. |. +.+| +++.+|++|+++++++|+++++++.
T Consensus 388 ~~~~~l~~~l~~~Gv~v~----~~-----~~~~--l~~~~t~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 388 KMIAAMRMALILEGVDIG----GR-----GSVF--LSAQHEREHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp HHHHHHHHHHHHTTEECB----TT-----TEEE--CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCeEEe----CC-----CCEE--eeccCCHHHHHHHHHHHHHHHHHHH
Confidence 235679999999999884 21 2355 4689999999999999999988763
No 46
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=5.4e-34 Score=290.38 Aligned_cols=355 Identities=14% Similarity=0.068 Sum_probs=267.2
Q ss_pred CCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhh
Q 040324 68 GRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLAL 147 (488)
Q Consensus 68 ~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~ 147 (488)
+....++.|+++||.+ ++|++||||+..+ ..++ .+|.+.+|+.+++++....+.. ...+.
T Consensus 42 ~~~~~~g~g~~~~d~~-------------~~g~~~i~~~~~~-~~~~-~~~~v~~a~~~~~~~~~~~y~~-----~~~~l 101 (421)
T 3l8a_A 42 TRPDRLNQFTYKWKTS-------------ENNPELLQMWVAD-MDFL-PVPEIKEAIINYGREHIFGYNY-----FNDDL 101 (421)
T ss_dssp CCCCCTTTTBTTTGGG-------------TTCTTCEECCSSC-CCSC-CCHHHHHHHHHHHHHCCSSCBC-----CCHHH
T ss_pred cccccCCCCCcccccc-------------CCCCCeeecccCC-CCCC-CCHHHHHHHHHHHhcCCcCCCC-----CCHHH
Confidence 3445678899998876 1168999997543 2333 5789999999999873332211 12455
Q ss_pred HHHHHHHHHHHhCC----CCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC--------
Q 040324 148 HNELEECVARFVGK----PAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------- 215 (488)
Q Consensus 148 ~~~l~~~la~~~g~----~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------- 215 (488)
.+++++.+++.++. +.+++.++|++|+..+++++.++++.|++..+.|+.+...+...|.+++.++.+
T Consensus 102 ~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 181 (421)
T 3l8a_A 102 YQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEI 181 (421)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEEC
T ss_pred HHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeee
Confidence 56666666666662 346666677778999999999999999999999999999999999998888753
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCC---CChHHHHHHHHHcCcEEEEEccccccccCCCCCCcc
Q 040324 216 TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGEL---CKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVC 292 (488)
Q Consensus 216 d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~---~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~ 292 (488)
|+++|++++.+. ++.+|+++++++++|.+ .++++|+++|++||++||+||+|+ +++++|....
T Consensus 182 d~~~le~~i~~~------------~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~--~~~~~g~~~~ 247 (421)
T 3l8a_A 182 DFEQLEKDIIDN------------NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQ--DLALFGNTHH 247 (421)
T ss_dssp CHHHHHHHHHHT------------TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTT--TCBCTTCCCC
T ss_pred CHHHHHHHhhcc------------CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc--ccccCCCCCc
Confidence 899999998741 45567778899999987 469999999999999999999999 7777776543
Q ss_pred hhcCCCC--CCccEEEcccccccCCcc---cEEEeC-HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCch
Q 040324 293 ELLGVDT--SDVDIMMGTFSKSFGSYG---GYIAGS-KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCR 366 (488)
Q Consensus 293 ~~~~v~p--~~~di~~~t~sK~~g~~G---g~i~~~-~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~ 366 (488)
....+.+ .++++++.|+||++|.+| |+++++ +++++.+......+++ .+.+++.++++.++++.. .++
T Consensus 248 ~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~-~~~n~~~~~a~~aal~~~-----~~~ 321 (421)
T 3l8a_A 248 SLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQ-HEVPTVGMIATQAAFQYG-----KPW 321 (421)
T ss_dssp CGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHHHC-----HHH
T ss_pred cHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhccc-CCCCHHHHHHHHHHHhcc-----HHH
Confidence 3444433 355688889999998666 999887 8998888765422222 248899999999998853 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCeEEEEeCCc-chHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEe
Q 040324 367 GAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVMPIMVYNP-AKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARIC 443 (488)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~ 443 (488)
.+++.++++++.+++++.|++. ++.+..+.++.+.++.+... ....++.+.|+++ ||.+.+.. .+.+.+.+++||+
T Consensus 322 ~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~-~f~~~~~~~iRi~ 400 (421)
T 3l8a_A 322 LEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGA-HFGKEGKYFARLN 400 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGG-GGCGGGTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECch-hhCCCCCCEEEEE
Confidence 6788889999999999999985 88887776666666776542 3456789999865 99999732 2233446899999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHH
Q 040324 444 ISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 444 ~~~~~t~edid~~l~~l~~~~~ 465 (488)
++ +++++|++++++|+++++
T Consensus 401 ~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 401 VA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp CC--SCHHHHHHHHHHHHHHC-
T ss_pred ec--CCHHHHHHHHHHHHHHHh
Confidence 85 699999999999998764
No 47
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=1.6e-34 Score=291.61 Aligned_cols=341 Identities=14% Similarity=0.104 Sum_probs=258.3
Q ss_pred ccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC
Q 040324 66 CFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT 144 (488)
Q Consensus 66 ~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~ 144 (488)
.+|..+.++.|+++||.+ |++||||+++.+ ..+++.+|.+.+++.++++++.... + .+ .
T Consensus 26 ~~~~~~~~~~g~~~~d~~---------------g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~---~-~~-~ 85 (395)
T 1vef_A 26 KHDLLIVRGQGARVWDAE---------------GNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP---Q-TL-P 85 (395)
T ss_dssp CCSSCEEEEEBTEEEETT---------------SCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC---T-TS-C
T ss_pred CCCccEEecccCEEEeCC---------------CCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCc---c-cc-C
Confidence 466678899999999988 999999976632 3344457899999999998864321 1 11 4
Q ss_pred hhhHHHHHHHHHHHhC--CCCeEEeCCcHHHHhhhhhccc--CCCcEEEEeCC-CchHHHHHHHhcCCe-----------
Q 040324 145 LALHNELEECVARFVG--KPAAIVFGMGYVTNSSILPVLM--GKGSLIISDSL-NHNSIVNGARGSGAT----------- 208 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g--~~~~i~~~sGs~a~~~~~~~~~--~~~~~Vl~~~~-~h~~~~~~~~~~g~~----------- 208 (488)
.+...++++.++++++ .+.++++++|++++..+++++. .+++.|++..+ +|+.+...+...|.+
T Consensus 86 ~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~ 165 (395)
T 1vef_A 86 TPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVE 165 (395)
T ss_dssp CHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSS
T ss_pred CHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCC
Confidence 5677999999999995 3567888889999877776652 34555555554 566666667766664
Q ss_pred -EEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEccccccc
Q 040324 209 -IRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDEAHSIGA 283 (488)
Q Consensus 209 -v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE~~s~g~ 283 (488)
+..++++|+++|++.+++ ++.+|+++++++++|.+.+ +++|+++|++||++||+||+|+ +
T Consensus 166 ~~~~~~~~d~~~l~~~i~~-------------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~--~ 230 (395)
T 1vef_A 166 PVEFIPYNDVEALKRAVDE-------------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT--G 230 (395)
T ss_dssp CEEEECTTCHHHHHHHCCT-------------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT--T
T ss_pred CeeEeCCCcHHHHHHHhcc-------------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc--C
Confidence 566777899999988753 4567788999999998877 9999999999999999999999 6
Q ss_pred cCCCCCC-cchhcCCCCCCccEEEcccccccCCc--ccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhc
Q 040324 284 VGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY--GGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIG 360 (488)
Q Consensus 284 ~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~--Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~ 360 (488)
+++.|.. ..+.+++.+ |++ ||||+++++ .|++++++++++.+...... .+.+.+++.++++.++|+.+.
T Consensus 231 ~~~~g~~~~~~~~~~~~---d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~al~~~~- 302 (395)
T 1vef_A 231 MGRTGKRFAFEHFGIVP---DIL--TLAKALGGGVPLGVAVMREEVARSMPKGGHG--TTFGGNPLAMAAGVAAIRYLE- 302 (395)
T ss_dssp TTTTSSSSTHHHHTCCC---SEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTSSC--CSSTTCHHHHHHHHHHHHHHH-
T ss_pred CccCCchhHhhhcCCCC---CEE--EEcccccCCCceEEEEehHHHHhhhccCCcC--CCcCCCHHHHHHHHHHHHHHH-
Confidence 8877765 346666655 666 899999862 28999998887766543233 233488999999999998873
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHhCCCeec--CCCCCCeEEEEeCCcchHHHHHHHHH-HCCceEEeecCCCccCCC
Q 040324 361 EDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL--GDNDSPVMPIMVYNPAKVSSFSRECL-KQNVAIVTVGFPATPLLL 437 (488)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~ 437 (488)
.++..++++++.+++++.|++++.++. .+..+.++++.+... ..++.+.|+ ++||.+.+. +.
T Consensus 303 ------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--~~~l~~~l~~~~gi~v~~~-------~~ 367 (395)
T 1vef_A 303 ------RTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEK--AAPYIARLEKEHRVLALQA-------GP 367 (395)
T ss_dssp ------HHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSC--SHHHHHHHHHHHCEECEES-------ST
T ss_pred ------hCCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcCh--HHHHHHHHHHHCCeEEecC-------CC
Confidence 245778889999999999998864321 123457777777542 567899999 889999852 24
Q ss_pred CeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 438 ARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 438 ~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
+++||+++..+|++|+++++++|++++
T Consensus 368 ~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 368 TVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 789999998999999999999998875
No 48
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.9e-34 Score=288.96 Aligned_cols=344 Identities=15% Similarity=0.075 Sum_probs=260.0
Q ss_pred CCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHH
Q 040324 73 SAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELE 152 (488)
Q Consensus 73 ~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~ 152 (488)
+++|+++||.+ |+++|||+++. ..++ .+|.+.+++.+++++....+.. .+ .+++
T Consensus 11 ~~~g~~~~d~~---------------g~~~idl~~~~-~~~~-~~~~v~~a~~~~~~~~~~~y~~----~~-----~~lr 64 (377)
T 3fdb_A 11 RARNTMKWTRY---------------GQGVLPLWVAE-SDFS-TCPAVLQAITDAVQREAFGYQP----DG-----SLLS 64 (377)
T ss_dssp HHTCCHHHHSS---------------CTTSEECCSSC-CCSC-CCHHHHHHHHHHHHTTCCSSCC----SS-----CCHH
T ss_pred cCCCCceeecc---------------CCCeeeecccC-CCCC-CCHHHHHHHHHHHHcCCCCCCC----CC-----HHHH
Confidence 57899999988 99999998654 2333 4689999999998763222221 12 4677
Q ss_pred HHHHHHhC------C--CCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC---CHHHHH
Q 040324 153 ECVARFVG------K--PAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN---TPSHLE 221 (488)
Q Consensus 153 ~~la~~~g------~--~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~---d~~~Le 221 (488)
+.++++++ . ++++++++|++++..++.++.++|+.|+++.++|+++...++..|.+++.++.+ |+++|+
T Consensus 65 ~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~l~ 144 (377)
T 3fdb_A 65 QATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGGINLHDVE 144 (377)
T ss_dssp HHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCCCCHHHHH
Confidence 77777765 2 457777778888888888889999999999999999999999999999999987 899999
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCC-CCcchhcCC
Q 040324 222 EVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTG-RGVCELLGV 297 (488)
Q Consensus 222 ~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g-~~~~~~~~v 297 (488)
+.+++ .+++++++ .+++++|.+.+ +++|+++|++||+++|+||+|+ .+.++| ........+
T Consensus 145 ~~l~~------------~~~~v~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~g~~~~~~~~~~ 209 (377)
T 3fdb_A 145 KGFQA------------GARSILLC-NPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHA--PLVFDGQHTVAAGVSD 209 (377)
T ss_dssp HHHHT------------TCCEEEEE-SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTG--GGBSSSCCCCGGGSCH
T ss_pred HHhcc------------CCCEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccc--hhhcCCCCCcccHHHc
Confidence 98875 14444444 55888998875 7788888999999999999999 566555 333333333
Q ss_pred CCCCccEEEcccccccCCcc---cEEEe-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 040324 298 DTSDVDIMMGTFSKSFGSYG---GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLAR 373 (488)
Q Consensus 298 ~p~~~di~~~t~sK~~g~~G---g~i~~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~ 373 (488)
+..+.++++.|+||++|.+| ||++. ++++++.+.......++ +.+++.++++.++|+.. .++.++.+++
T Consensus 210 ~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~-----~~~~~~~~~~ 282 (377)
T 3fdb_A 210 TAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKD--GASTLGLIAAEAAYRYG-----TDFLNQEVAY 282 (377)
T ss_dssp HHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHC--CCCHHHHHHHHHHHHHC-----HHHHHHHHHH
T ss_pred cCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHhcc-----HHHHHHHHHH
Confidence 22345688899999998776 87665 78999988775543333 48888888888888753 1246788899
Q ss_pred HHHHHHHHHHHHHhC--CCeecCCCCCCeEEEEeCCcchHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeecCCCCH
Q 040324 374 IRENSNFFRSKLQKM--GFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICISASHTK 450 (488)
Q Consensus 374 ~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~ 450 (488)
++++.+++.+.|++. |+.+..+.++.++++.+.......++.+.|+++ ||.+.+... +...+.+++||+++ .++
T Consensus 283 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-~~~~~~~~~Ris~~--~~~ 359 (377)
T 3fdb_A 283 LKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAW-FGEDGTGFCRLNFA--TSR 359 (377)
T ss_dssp HHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGG-GCGGGTTEEEEECC--SCH
T ss_pred HHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChh-ccCCCCCEEEEEeC--CCH
Confidence 999999999999985 888887766666677776532235678888887 999997332 22224589999985 489
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040324 451 EDLIEALEVISRIGDLV 467 (488)
Q Consensus 451 edid~~l~~l~~~~~~~ 467 (488)
+++++++++|+++++++
T Consensus 360 e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 360 EVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999988653
No 49
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=3.5e-33 Score=281.07 Aligned_cols=356 Identities=15% Similarity=0.028 Sum_probs=261.6
Q ss_pred cCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChh
Q 040324 67 FGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLA 146 (488)
Q Consensus 67 ~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~ 146 (488)
|+....++.|+++||.+ |+++|||+.++ ..++ .+|.+.+++.+++++...++.. ...+
T Consensus 9 f~~~~~~~~g~~~~d~~---------------g~~~i~~~~~~-~~~~-~~~~v~~a~~~~~~~~~~~y~~-----~~~~ 66 (391)
T 3dzz_A 9 FTHVPKRQGNSIKWGVL---------------KEKELPMWIAE-MDFK-IAPEIMASMEEKLKVAAFGYES-----VPAE 66 (391)
T ss_dssp CSSCCCCCTTBTTTTTC---------------CTTCEECCSSC-CSSC-CCHHHHHHHHHHHTTCCCCCBC-----CCHH
T ss_pred cchhccCCCCccceecc---------------CCCceeccccC-CCCC-CCHHHHHHHHHHHhcCcCCCCC-----CCHH
Confidence 33344578999999988 89999997553 2333 4689999999998764333321 1334
Q ss_pred hHHHHHHHHHHHhCC----CCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC--------
Q 040324 147 LHNELEECVARFVGK----PAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH-------- 214 (488)
Q Consensus 147 ~~~~l~~~la~~~g~----~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~-------- 214 (488)
..+++++.+++.+|. +.++++++|++++..++.++.++++.|+++.++|+++...++..|.+++.++.
T Consensus 67 l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 146 (391)
T 3dzz_A 67 YYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYS 146 (391)
T ss_dssp HHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEE
T ss_pred HHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCcee
Confidence 445566666666552 34566666678888888888999999999999999999999999999998886
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCC---CChHHHHHHHHHcCcEEEEEccccccccCCCCCCc
Q 040324 215 NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGEL---CKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGV 291 (488)
Q Consensus 215 ~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~---~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~ 291 (488)
.|+++|++.+++. +..+|+++.+++++|.+ .++++|+++|++||++||+||+|+ .+.+.|...
T Consensus 147 ~d~~~l~~~l~~~------------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~g~~~ 212 (391)
T 3dzz_A 147 VNWADLEEKLATP------------SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHG--DLVLTDEDI 212 (391)
T ss_dssp CCHHHHHHHHTST------------TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTT--TCBCSSCCC
T ss_pred ecHHHHHHHHhcc------------CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccc--cccCCCCCc
Confidence 4889999888631 33455566778999988 469999999999999999999999 555555432
Q ss_pred chhcCCCC--CCccEEEcccccccCCcc---cEEEeC-HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCc
Q 040324 292 CELLGVDT--SDVDIMMGTFSKSFGSYG---GYIAGS-KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSC 365 (488)
Q Consensus 292 ~~~~~v~p--~~~di~~~t~sK~~g~~G---g~i~~~-~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~ 365 (488)
.....+.. .+.++++.|+||++|.+| |+++++ +++++.+........ ..+.+++.++++.++|+.. .+
T Consensus 213 ~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~-----~~ 286 (391)
T 3dzz_A 213 TPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAG-IGEPNLLAIPAAIAAYEEG-----HD 286 (391)
T ss_dssp CCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHT-CSSCCTTHHHHHHHHHHHC-----HH
T ss_pred eehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcc-----HH
Confidence 22222221 233488999999998666 999987 999888876432111 1237777778888887752 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC--CCeecCCCCCCeEEEEeCCc-chHHHHHHHHH-HCCceEEeecCCCccCCCCeEE
Q 040324 366 RGAQKLARIRENSNFFRSKLQKM--GFEVLGDNDSPVMPIMVYNP-AKVSSFSRECL-KQNVAIVTVGFPATPLLLARAR 441 (488)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iR 441 (488)
..++..++++++.+++.+.|++. |+.+..+.++.++++.+... ....++.++|+ ++||.+.+.. .+.+.+.+++|
T Consensus 287 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~-~~~~~~~~~iR 365 (391)
T 3dzz_A 287 WLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGN-GYRGNGHEFVR 365 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESG-GGCTTGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCch-hhCCCCCCEEE
Confidence 46788889999999999999984 88887766666666666542 46778999997 7799999733 12223357999
Q ss_pred EeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 442 ICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 442 i~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
|+++ ++++++++++++|+++++++
T Consensus 366 is~~--~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 366 INLA--CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp EECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred EEec--CCHHHHHHHHHHHHHHHHHh
Confidence 9985 79999999999999998765
No 50
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=1.7e-33 Score=281.91 Aligned_cols=336 Identities=17% Similarity=0.201 Sum_probs=254.0
Q ss_pred cCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccc-cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCCh
Q 040324 67 FGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNY-LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL 145 (488)
Q Consensus 67 ~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~-lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~ 145 (488)
+|..+.+++|.++++.+ |+.||||+++.+ ..++|.+|.+.+++.+++++++... . .+ ..
T Consensus 10 ~~~~~~~~~g~~~~~~~---------------g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~--~--~y-~~ 69 (375)
T 2eh6_A 10 LPVKFVRGKGVYLYDEE---------------GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVS--N--LY-EN 69 (375)
T ss_dssp EEEEEEEEEBTEEEETT---------------CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCC--T--TB-CC
T ss_pred CCccEEeeecCEEEeCC---------------CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccC--c--cc-CC
Confidence 45567889999999988 999999987655 5677678999999999998763221 1 12 23
Q ss_pred hhHHHHHHHHHHHhCC-CCeEEeCCcHHHHhhhhhc---cc---CCC-cEEEEeCCCchH-HHHHHHhcCC---------
Q 040324 146 ALHNELEECVARFVGK-PAAIVFGMGYVTNSSILPV---LM---GKG-SLIISDSLNHNS-IVNGARGSGA--------- 207 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~-~~~i~~~sGs~a~~~~~~~---~~---~~~-~~Vl~~~~~h~~-~~~~~~~~g~--------- 207 (488)
+...++++.+++++|. ++++++++|++++..+++. +. ++| +.|++..+.|+. ........+.
T Consensus 70 ~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 149 (375)
T 2eh6_A 70 PWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEP 149 (375)
T ss_dssp HHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCS
T ss_pred HHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCC
Confidence 5668999999999998 6788888888888666643 34 667 888888876544 3433343322
Q ss_pred ---eEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcEEEEEcccc
Q 040324 208 ---TIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAYTYLDEAHS 280 (488)
Q Consensus 208 ---~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~li~DE~~s 280 (488)
.+..++++|+++|++.+++ +..+|+++++++++|.+.+ +++|+++|++||++||+||+|+
T Consensus 150 ~~~~~~~~~~~d~~~l~~~l~~-------------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~ 216 (375)
T 2eh6_A 150 LVPGFSYAKLNDIDSVYKLLDE-------------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT 216 (375)
T ss_dssp CCSSEEEECTTCHHHHHTTCCT-------------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred CCCCceeCCCchHHHHHHHhcC-------------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc
Confidence 1666777899998887653 3557777889999999877 9999999999999999999999
Q ss_pred ccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc-c-cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHH
Q 040324 281 IGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY-G-GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQV 357 (488)
Q Consensus 281 ~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~-G-g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~ 357 (488)
++++++.. ..+.++..+ |++ ||||.++++ + |++++++++++.+.......+++ .+++.++++.++|+.
T Consensus 217 --~~~~~~~~~~~~~~~~~~---d~~--s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 287 (375)
T 2eh6_A 217 --GIGRTGEFYAYQHFNLKP---DVI--ALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFG--GNPLACRAGTVVVDE 287 (375)
T ss_dssp --TTTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSST--TCHHHHHHHHHHHHH
T ss_pred --CCCCCCcchhhhhcCCCC---CEE--EEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCC--CCHHHHHHHHHHHHH
Confidence 67777654 344556444 666 899999852 2 89999988877665533333443 788888888888887
Q ss_pred HhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCC
Q 040324 358 VIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLL 437 (488)
Q Consensus 358 i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~ 437 (488)
+ . +..++++++.+++.+.|++++.... +..+.++++.+.. ...++++.|+++||.+.+. +.
T Consensus 288 ~-------~--~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~--~~~~~~~~l~~~gi~~~~~-------~~ 348 (375)
T 2eh6_A 288 V-------E--KLLPHVREVGNYFKEKLKELGKGKV-KGRGLMLGLELER--ECKDYVLKALEKGLLINCT-------AG 348 (375)
T ss_dssp H-------H--HHHHHHHHHHHHHHHHHHHTTSSEE-EEETTEEEEECSS--CCHHHHHHHHHTTEECEEE-------TT
T ss_pred H-------H--HHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEEEEEEEcC--cHHHHHHHHHHCCCEEecC-------CC
Confidence 5 2 6788889999999999998865333 2346777777653 3567899999999999863 24
Q ss_pred CeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 438 ARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 438 ~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
+.+||+++..+|++|+++++++|+++
T Consensus 349 ~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 349 KVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 78999999899999999999999875
No 51
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=1.7e-32 Score=277.89 Aligned_cols=349 Identities=16% Similarity=0.140 Sum_probs=254.8
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC----CCeEEeCCc
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK----PAAIVFGMG 170 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~~~i~~~sG 170 (488)
|+++|||+++.+-..+++++.+.+++.+++++.+.. .. ++......++++.+|+++ |. +.++++++|
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~----~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~ 107 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKS----VM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGG 107 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGG----GS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccc----cc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCH
Confidence 678999976543222345678999999998874311 11 233334578999999988 72 345555566
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEE
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVV 246 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~ 246 (488)
++++..++.++.++|+.|+++.++|+.+...++..|.+++.++.+ |+++|++.+++...++ +..++++++
T Consensus 108 t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~------~~~~~v~~~ 181 (407)
T 2zc0_A 108 TGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKG------QKVKLIYTI 181 (407)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTT------CCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhccc------CCceEEEEC
Confidence 788888888888999999999999999999999999999888763 8899999887321111 113444567
Q ss_pred cCcCCCCCCCCChH---HHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---cEE
Q 040324 247 EGIYSMEGELCKLP---EIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYI 320 (488)
Q Consensus 247 e~v~s~~G~~~~l~---~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i 320 (488)
..+++++|.+.+++ +|+++|++||++||+||+|+ .+..+|........+++.+.+++++|+||++| +| ||+
T Consensus 182 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~ 258 (407)
T 2zc0_A 182 PTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYN--FMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWI 258 (407)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT--TSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEE
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCc--ccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEE
Confidence 88899999988865 99999999999999999999 44444443222222233345788899999999 55 999
Q ss_pred EeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHHHHHHHHhC--CCeecCCCC
Q 040324 321 AGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGS-CRGAQKLARIRENSNFFRSKLQKM--GFEVLGDND 397 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 397 (488)
++++++++.+......++++ .+++.++++.++|+... .. +..++..++++++.+++.+.|++. ++.+..+.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 333 (407)
T 2zc0_A 259 IAEGEILKKVLMQKQPIDFC--APAISQYIALEYLKRGY---FEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIA 333 (407)
T ss_dssp ECCHHHHHHHHHHHTTTTSS--SCHHHHHHHHHHHHTTH---HHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSB
T ss_pred ecCHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHcCC---chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCC
Confidence 99999999888765554444 67888887777776420 01 134567788889999999999874 566665656
Q ss_pred CCeEEEEeCCcchHHHHHHHHHHC-CceEEeec-CCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 398 SPVMPIMVYNPAKVSSFSRECLKQ-NVAIVTVG-FPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~-~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+.++++.+.......++.+.|.++ ||.+.+.. |.....+.+++||+++.. |++|+++++++|+++++++
T Consensus 334 ~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 334 GMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 677788776544677899999999 99998632 211112457999999765 8999999999999998876
No 52
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=1.6e-32 Score=275.50 Aligned_cols=348 Identities=11% Similarity=0.017 Sum_probs=250.8
Q ss_pred cCCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHH
Q 040324 72 SSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNEL 151 (488)
Q Consensus 72 ~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l 151 (488)
.++.|+++||.+ +++++|||++++ .+++ .+|.+.+++.+++++....+.. ...+..+++
T Consensus 10 ~~~~g~~~~d~~--------------~~~~~i~l~~~~-~~~~-~~~~v~~a~~~~~~~~~~~y~~-----~~~~~~~~l 68 (383)
T 3kax_A 10 RRGTHSIKWDTY--------------KNEELIHAWIAD-MDFE-VPQPIQTALKKRIEHPIFGYTL-----PPENIGDII 68 (383)
T ss_dssp ---------CCC--------------SSSCCEECCCSS-CSSC-CCHHHHHHHHHHHHSCCCCCCC-----CCTTHHHHH
T ss_pred ccCCCceeeecc--------------CCCCeeeccccc-CCCC-CCHHHHHHHHHHHhcCCCCCCC-----CCHHHHHHH
Confidence 468899999843 168999998654 3444 4689999999998763233321 134556777
Q ss_pred HHHHHHHhC--C--CCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC--------CHHH
Q 040324 152 EECVARFVG--K--PAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN--------TPSH 219 (488)
Q Consensus 152 ~~~la~~~g--~--~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~--------d~~~ 219 (488)
++.+++.+| . +.++++++|++++..++.++.++++.|+++.++|+++...++..|.+++.++.+ |+++
T Consensus 69 ~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~ 148 (383)
T 3kax_A 69 CNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEH 148 (383)
T ss_dssp HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHCCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHH
T ss_pred HHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHH
Confidence 788887777 2 356677777778888888889999999999999999999999999999988752 7899
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLG 296 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~ 296 (488)
|++.+.. ..++ |++..+.+++|.+.+ +++|+++|++||++||+||+|+ .+.++|........
T Consensus 149 l~~~l~~------------~~~~-v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~g~~~~~~~~ 213 (383)
T 3kax_A 149 LEKQFQQ------------GVKL-MLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHS--DIIYADHTHTPFAS 213 (383)
T ss_dssp HHHHHTT------------TCCE-EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTT--TCBCTTCCCCCGGG
T ss_pred HHHHhCc------------CCeE-EEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEcccc--ccccCCCCceeHhh
Confidence 9988832 2444 455677888998876 6777777999999999999999 66666543333333
Q ss_pred CCC--CCccEEEcccccccCCcc---cEEEe-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHH
Q 040324 297 VDT--SDVDIMMGTFSKSFGSYG---GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQK 370 (488)
Q Consensus 297 v~p--~~~di~~~t~sK~~g~~G---g~i~~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~ 370 (488)
+.+ .+.++++.|+||.+|.+| ||+++ ++++++.+......+.+ .+.+++.++++.++|+.. .+..+++
T Consensus 214 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~-----~~~~~~~ 287 (383)
T 3kax_A 214 LSEELAARTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYRQGF-HGLNIFAYTAMQSAYTEC-----NDWLNEI 287 (383)
T ss_dssp SCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHHTTTC-----HHHHHHH
T ss_pred cCccccCcEEEEEEChhhccCcchhheEEEeCCHHHHHHHHHHHhhccc-CCCCHHHHHHHHHHHHhh-----HHHHHHH
Confidence 322 245688999999998766 99987 68888888765432222 247888888888877642 1246778
Q ss_pred HHHHHHHHHHHHHHHHhC--CCeecCCCCCCeEEEEeCCc-chHHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecC
Q 040324 371 LARIRENSNFFRSKLQKM--GFEVLGDNDSPVMPIMVYNP-AKVSSFSRECL-KQNVAIVTVGFPATPLLLARARICISA 446 (488)
Q Consensus 371 ~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~ 446 (488)
.++++++.+++.+.|++. |+.+..+.++.++++.+... ....++.+.|+ ++||.+.+.. .+.+.+.+++||+++
T Consensus 288 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~-~~~~~~~~~iRi~~~- 365 (383)
T 3kax_A 288 RFYIEDNAKFACEYIKDHIPTLSVMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGE-KYGLGGEEHIGINIG- 365 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESG-GGCTTCTTEEEEECS-
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEecCCceEEEEEEccccCCCHHHHHHHHHhhCCEEeECch-hhcCCCCCeEEEEEc-
Confidence 889999999999999985 88887766666666766542 36778999998 5799999732 222234689999985
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 040324 447 SHTKEDLIEALEVISRIG 464 (488)
Q Consensus 447 ~~t~edid~~l~~l~~~~ 464 (488)
.+++++++++++|++++
T Consensus 366 -~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 366 -CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp -SCHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHh
Confidence 69999999999999875
No 53
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=2.4e-32 Score=275.96 Aligned_cols=354 Identities=11% Similarity=0.012 Sum_probs=259.1
Q ss_pred cCCCcc-CCCCceEEEeeccccCCcccccccCCc-------ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCc
Q 040324 67 FGRPLS-SAPDAWFDVVERYSNDNNKTLKRTNNV-------SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSS 138 (488)
Q Consensus 67 ~~~~i~-~~~G~~~~~~dr~~~~~~~~~~~~~~g-------~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~ 138 (488)
|+..+. ++.|+++||.+ | ++++||+++. .+++ .+|.+.+++.+++++....+.
T Consensus 5 ~~~~~~~~~~g~~~~d~~---------------g~~~g~~~~~~i~l~~~~-~~~~-~~~~v~~a~~~~~~~~~~~y~-- 65 (399)
T 1c7n_A 5 FTTKISRKNLGSLKWDLM---------------YSQNPEVGNEVVPLSVAD-MEFK-NPPELIEGLKKYLDETVLGYT-- 65 (399)
T ss_dssp SCCCCCCTTTTBHHHHHH---------------HHHCTTCCTTCCCCCSSS-CSSC-CCHHHHHHHHHHHHHCCCSSB--
T ss_pred ccccccccCCCccccccc---------------hhhccccCCCceeeeecC-CCCC-CCHHHHHHHHHHHhcCCCCCC--
Confidence 443443 78999999987 4 3789997554 4454 468899999999876322221
Q ss_pred ccCCCChhhHHHHHHHHHHHh----C--C--CCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEE
Q 040324 139 RVDGGTLALHNELEECVARFV----G--K--PAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIR 210 (488)
Q Consensus 139 ~~~~g~~~~~~~l~~~la~~~----g--~--~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~ 210 (488)
.. ..++++.+++++ | . +.++++++|++++..++.++.++|+.|+++.++|+++...++..|.+++
T Consensus 66 -----~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~ 138 (399)
T 1c7n_A 66 -----GP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKII 138 (399)
T ss_dssp -----CC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEE
T ss_pred -----CC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEE
Confidence 11 467888888875 5 2 3466666677888888888889999999999999999999999999988
Q ss_pred EeeC--------CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccc
Q 040324 211 VFQH--------NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAH 279 (488)
Q Consensus 211 ~~~~--------~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~ 279 (488)
.++. .|+++|++.+++. +..+|++....+++|.+.+ +++|+++|++||++||+||+|
T Consensus 139 ~~~~~~~~g~~~~d~~~l~~~l~~~------------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~ 206 (399)
T 1c7n_A 139 ECELLEKDGYYTIDFQKLEKLSKDK------------NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIH 206 (399)
T ss_dssp ECCCEEETTEEECCHHHHHHHHTCT------------TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTT
T ss_pred ecccccCCCCEEEcHHHHHHHhccC------------CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 8775 3788888887631 2334555677888999888 999999999999999999999
Q ss_pred cccccCCCCCCcchhcCCCC--CCccEEEcccccccCCcc---cEEEeC-HHHHHHHHhhCCCCcccCCCCHHHHHHHHH
Q 040324 280 SIGAVGKTGRGVCELLGVDT--SDVDIMMGTFSKSFGSYG---GYIAGS-KELIQYLKYNCPAHLYATSISPPAAEQIIS 353 (488)
Q Consensus 280 s~g~~g~~g~~~~~~~~v~p--~~~di~~~t~sK~~g~~G---g~i~~~-~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a 353 (488)
+ .+.++|........+++ .+.++++.|+||++|.+| ||++++ +++++.+......+++ .+.+++.++++.+
T Consensus 207 ~--~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~a~~~ 283 (399)
T 1c7n_A 207 F--DLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSG-MPFTTLGYKACEI 283 (399)
T ss_dssp T--TCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTC-CCCCHHHHHHHHH
T ss_pred c--ccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhccc-CCCCHHHHHHHHH
Confidence 9 55555543222333322 244788899999998766 999986 6788888765443322 1368888888888
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCCCCeEEEEeCCc-chHHHHHHHHH-HCCceEEeec
Q 040324 354 AIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQK-M-GFEVLGDNDSPVMPIMVYNP-AKVSSFSRECL-KQNVAIVTVG 429 (488)
Q Consensus 354 ~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~Gi~v~~~~ 429 (488)
+|+.. .+..++..++++++.+++.+.|++ + |+.+..+.++.++++.+... ....++.+.|+ ++||.+.+..
T Consensus 284 ~l~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 358 (399)
T 1c7n_A 284 CYKEC-----GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGY 358 (399)
T ss_dssp HHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGG
T ss_pred HHhCC-----hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCcc
Confidence 87642 124677888899999999999988 5 77776655555556766532 35678999998 5799999733
Q ss_pred CCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCC
Q 040324 430 FPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469 (488)
Q Consensus 430 ~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~ 469 (488)
. +.+.+.+++||+++ .+++++++++++|.++++++..
T Consensus 359 ~-~~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 359 I-FGDGGIGFERINLA--APSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp G-GCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC-
T ss_pred c-cCCCCCCeEEEEec--cCHHHHHHHHHHHHHHHHHHHh
Confidence 1 12234579999985 4589999999999999988753
No 54
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=2.1e-32 Score=273.67 Aligned_cols=329 Identities=17% Similarity=0.125 Sum_probs=247.1
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCC--------CCeEEeCCc
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGK--------PAAIVFGMG 170 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--------~~~i~~~sG 170 (488)
|++++||+++.+ .+++ ++.+.+++.+++++....+ +......++++.+|++++. ++++++++|
T Consensus 28 g~~~i~l~~~~~-~~~~-~~~v~~a~~~~~~~~~~~y-------~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 98 (370)
T 2z61_A 28 GKKVIHLEIGEP-DFNT-PKPIVDEGIKSLKEGKTHY-------TDSRGILELREKISELYKDKYKADIIPDNIIITGGS 98 (370)
T ss_dssp TCCCEECCCCSC-SSCC-CHHHHHHHHHHHHTTCCSC-------CCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSH
T ss_pred CCCEEEccCCCC-CCCC-CHHHHHHHHHHHHcCccCC-------CCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCCh
Confidence 678899976554 4444 5789999999887632222 2222347888888888742 457777778
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcC
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY 250 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~ 250 (488)
++++..+++++.++|+.|+++.++|+++...++..|.+++.++ .|+++|++.+++ +..+|+++.+.
T Consensus 99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-~d~~~l~~~l~~-------------~~~~v~~~~p~ 164 (370)
T 2z61_A 99 SLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD-FTVESLEEALSD-------------KTKAIIINSPS 164 (370)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC-SSHHHHHHHCCS-------------SEEEEEEESSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC-CCHHHHHHhccc-------------CceEEEEcCCC
Confidence 8888888888899999999999999999999999999999988 789998887753 23345557788
Q ss_pred CCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCC-CCCccEEEcccccccCCcc---cEEEeCHHH
Q 040324 251 SMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD-TSDVDIMMGTFSKSFGSYG---GYIAGSKEL 326 (488)
Q Consensus 251 s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~-p~~~di~~~t~sK~~g~~G---g~i~~~~~~ 326 (488)
+++|.+.+++ |+++|++||++||+||+|+. +..+|.. .....++ ..+.|+++.|+||++|.+| ||+++++++
T Consensus 165 nptG~~~~~~-l~~~~~~~~~~li~De~~~~--~~~~g~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~ 240 (370)
T 2z61_A 165 NPLGEVIDRE-IYEFAYENIPYIISDEIYNG--LVYEGKC-YSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEI 240 (370)
T ss_dssp TTTCCCCCHH-HHHHHHHHCSEEEEECTTTT--CBSSSCC-CCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHH
T ss_pred CCcCcccCHH-HHHHHHHcCCEEEEEcchhh--cccCCCC-cCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHH
Confidence 8999999999 99999999999999999994 4333432 1112221 2356899999999998766 999999999
Q ss_pred HHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeC
Q 040324 327 IQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVY 406 (488)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 406 (488)
++.+......+++ +.+++.++++.++|+.+. .++.++.+++++++.+++.+.|++.|+++..+.++.++++.+.
T Consensus 241 ~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 314 (370)
T 2z61_A 241 IEAILKLQQNLFI--SAPTISQYAALKAFEKET----EREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIG 314 (370)
T ss_dssp HHHHHHHHHHHTS--SSCHHHHHHHGGGGSHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCS
T ss_pred HHHHHHHHhhccc--CCCHHHHHHHHHHHhccC----HHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCcceEEEEecC
Confidence 9888765443333 378888888777776410 1245778889999999999999998888766655565555554
Q ss_pred CcchHHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHH
Q 040324 407 NPAKVSSFSRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 407 ~~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~ 465 (488)
. ...++.++|+ ++||.+.+... +...+.+++||+++ ++++++++++++|+++++
T Consensus 315 ~--~~~~~~~~l~~~~gi~v~~g~~-f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 315 E--DGREFAYKLLKEKFVALTPGIG-FGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp S--CHHHHHHHHHHHHCEECEEGGG-GCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred C--CHHHHHHHHHHhCCEEEeCchh-hCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 3 5678999998 67999997321 11123578999996 799999999999998864
No 55
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=5.5e-32 Score=277.60 Aligned_cols=350 Identities=13% Similarity=0.125 Sum_probs=254.8
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC--CC-eEEeCCcH
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK--PA-AIVFGMGY 171 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~--~~-~i~~~sGs 171 (488)
++.+|||+++.+-....+++.+.+++.+++++.+.. ...++......+|++.+++++ |. ++ ++++++|+
T Consensus 75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~ 150 (448)
T 3aow_A 75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADK----ALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQ 150 (448)
T ss_dssp TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHH----HHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHH
T ss_pred CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHH----HhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHH
Confidence 356899975443212234578888998888763210 011222333478888898888 75 34 45555556
Q ss_pred HHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEc
Q 040324 172 VTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE 247 (488)
Q Consensus 172 ~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e 247 (488)
+++..++++++++||.|+++.|+|..+...++..|++++.++.+ |+++|++.++....++ +..++++++.
T Consensus 151 ~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~------~~~k~v~~~~ 224 (448)
T 3aow_A 151 QALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQG------KKVKVVYTVP 224 (448)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTT------CCEEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccC------CCCeEEEECC
Confidence 67788888889999999999999999999999999999888863 8999999887311110 1134444667
Q ss_pred CcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---cEEE
Q 040324 248 GIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIA 321 (488)
Q Consensus 248 ~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~ 321 (488)
...+++|.+.+ +++|+++|++||++||+||+|+. +...|........+++.+.+++++||||.+| +| ||++
T Consensus 225 ~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~--~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~ 301 (448)
T 3aow_A 225 TFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGE--LRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMV 301 (448)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTT--CBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEE
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCcc--ccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEE
Confidence 78888998876 67999999999999999999994 4444443333334444556889999999999 67 9999
Q ss_pred eCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC---CCeecCCCCC
Q 040324 322 GSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM---GFEVLGDNDS 398 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~ 398 (488)
+++++++.+......++++ .+++.++++.++|+.. ...++.++++++++++.+++.+.|++. |+.+..+.++
T Consensus 302 ~~~~l~~~l~~~~~~~~~~--~~~~~q~a~~~~L~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g 376 (448)
T 3aow_A 302 GDPGIIRKMEIAKQSTDLC--TNVFGQVVAWRYVDGG---YLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGG 376 (448)
T ss_dssp ECHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBS
T ss_pred eCHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCcc
Confidence 9999999887654433344 6788888777777631 011245677888889999999999875 7887767677
Q ss_pred CeEEEEeCCcchHHHHHHHHHHCCceEEeec-CCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 399 PVMPIMVYNPAKVSSFSRECLKQNVAIVTVG-FPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
.++++.+....+..++.++|+++||.+.+.. |...+.+.+++||+++. .|+++|++++++|.++++++
T Consensus 377 ~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 377 MFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp SEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 8888888654567789999999999999732 32222345799999865 48999999999999998765
No 56
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=3e-32 Score=274.29 Aligned_cols=351 Identities=11% Similarity=-0.003 Sum_probs=259.8
Q ss_pred cCCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHH
Q 040324 72 SSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNEL 151 (488)
Q Consensus 72 ~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l 151 (488)
.++.|+++||.+... + .++.+|||++++ .+++ .+|.+.+++.+++++....+. .+..+..+++
T Consensus 14 ~~~~g~~~~d~~~~~--------~--~~~~~i~l~~~~-~~~~-~~~~v~~a~~~~~~~~~~~y~-----~~~~~~~~~l 76 (391)
T 4dq6_A 14 RSNNFSSKWSEMEKK--------Y--GTNDLLPMWVAD-MDFK-AAPCIIDSLKNRLEQEIYGYT-----TRPDSYNESI 76 (391)
T ss_dssp CTTTTBHHHHCHHHH--------H--SCSCSEECCSSS-CSSC-CCHHHHHHHHHHHTTCCCCCB-----CCCHHHHHHH
T ss_pred cccCCceeeeecccc--------c--CCCCceeccccC-CCCC-CCHHHHHHHHHHHhCCCCCCC-----CCCHHHHHHH
Confidence 467899999887110 0 034559998654 2333 468899999999876322221 1456667788
Q ss_pred HHHHHHHhC--C--CCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC---------CHH
Q 040324 152 EECVARFVG--K--PAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN---------TPS 218 (488)
Q Consensus 152 ~~~la~~~g--~--~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~---------d~~ 218 (488)
++.+++++| . +.++++++|++++..++.++.++++.|+++.++|.++...++..|.+++.++.+ |++
T Consensus 77 ~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~ 156 (391)
T 4dq6_A 77 VNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYE 156 (391)
T ss_dssp HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHH
T ss_pred HHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHH
Confidence 888888877 2 457777777888888888889999999999999999999999999999988765 788
Q ss_pred HHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCC---ChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhc
Q 040324 219 HLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELC---KLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELL 295 (488)
Q Consensus 219 ~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~---~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~ 295 (488)
+|++.+++ ..+|++..+.+++|.+. ++++|+++|++||++||+||+|+ .+.++|.......
T Consensus 157 ~l~~~l~~--------------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~g~~~~~~~ 220 (391)
T 4dq6_A 157 DIENKIKD--------------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHS--DIILKKHKHIPMA 220 (391)
T ss_dssp HHHHHCTT--------------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTT--TCBCTTCCCCCGG
T ss_pred HHHHHhhc--------------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeecccc--ccccCCCCccCHH
Confidence 88877642 23455566788899884 58999999999999999999999 5655555433333
Q ss_pred CCCC--CCccEEEcccccccCCcc---cEEEeCH-HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHH
Q 040324 296 GVDT--SDVDIMMGTFSKSFGSYG---GYIAGSK-ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQ 369 (488)
Q Consensus 296 ~v~p--~~~di~~~t~sK~~g~~G---g~i~~~~-~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~ 369 (488)
.+.+ .+.++++.|+||++|.+| ||+++++ ++++.+......+. ..+.+++.++++.++|+... +..++
T Consensus 221 ~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~-----~~~~~ 294 (391)
T 4dq6_A 221 SISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRID-IKRNNCFSLVATEASYNNGE-----SWLES 294 (391)
T ss_dssp GSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHCH-----HHHHH
T ss_pred HcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHhchH-----HHHHH
Confidence 3332 134588899999998766 9998774 88888765432111 22478888888888887531 24677
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCeecCCCCCCeEEEEeCC-cchHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeec
Q 040324 370 KLARIRENSNFFRSKLQKM--GFEVLGDNDSPVMPIMVYN-PAKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICIS 445 (488)
Q Consensus 370 ~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~ 445 (488)
..++++++.+++.+.|++. |+.+..+.++.++++.+.. .....++.+.|+++ ||.+.+.. .+...+.+++||+++
T Consensus 295 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~-~~~~~~~~~iRis~~ 373 (391)
T 4dq6_A 295 FLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGN-SFGIGGSGYQRINLA 373 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGG-GGCTTCTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCch-hhCCCCCCeEEEEEc
Confidence 8889999999999999883 8888776666666676654 34677899999999 99999732 222234589999985
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 040324 446 ASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 446 ~~~t~edid~~l~~l~~~~ 464 (488)
++++++++++++|++++
T Consensus 374 --~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 374 --CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp --SCHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHh
Confidence 79999999999999876
No 57
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=4.7e-32 Score=273.84 Aligned_cols=344 Identities=14% Similarity=0.102 Sum_probs=251.4
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNSS 176 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~ 176 (488)
++++|||+++.+...+++++.+.+++.+++++.+... ..++......++++.+++++|.+ .++++++|++++..
T Consensus 31 ~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~ 106 (397)
T 2zyj_A 31 RPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVA----LQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDL 106 (397)
T ss_dssp STTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHH----TSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHH
T ss_pred CCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhh----hCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHH
Confidence 4568999755332123346789999999987642100 11122233489999999999863 34555555667788
Q ss_pred hhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCC
Q 040324 177 ILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSM 252 (488)
Q Consensus 177 ~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~ 252 (488)
++.++.++|+.|+++.+.|+.+...++..|.+++.++.+ |+++|++.+++. ..++++++..++++
T Consensus 107 ~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~-----------~~~~v~~~~~~~np 175 (397)
T 2zyj_A 107 VGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRE-----------RPRFLYLIPSFQNP 175 (397)
T ss_dssp HHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHC-----------CCSCEEECCBSCTT
T ss_pred HHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCCCCHHHHHHHHhhc-----------CCeEEEECCCCcCC
Confidence 888888999999999999999999999999999888753 789999888751 13445567788899
Q ss_pred CCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCC---CccEEEcccccccCCcc---cEEEeC
Q 040324 253 EGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTS---DVDIMMGTFSKSFGSYG---GYIAGS 323 (488)
Q Consensus 253 ~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~---~~di~~~t~sK~~g~~G---g~i~~~ 323 (488)
+|.+.+ +++|+++|++||++||+||+|+ .+..+|........+.++ +.++++.|+||++| +| ||++++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~ 252 (397)
T 2zyj_A 176 TGGLTPLPARKRLLQMVMERGLVVVEDDAYR--ELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAH 252 (397)
T ss_dssp TCCBCCHHHHHHHHHHHHHHTCCEEEECTTT--TCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECC
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeCCcc--cccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecC
Confidence 998876 5599999999999999999999 554444432112112122 34688899999999 66 999999
Q ss_pred HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC---CCeecCCCCCCe
Q 040324 324 KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM---GFEVLGDNDSPV 400 (488)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~ 400 (488)
+++++.+......++++ .+++.++++.++|+... . +..++..++++++.+++.+.|++. |+.+..+.++.+
T Consensus 253 ~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~---~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~ 326 (397)
T 2zyj_A 253 PEALQKLVQAKQGADLH--TPMLNQMLVHELLKEGF---S-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMF 326 (397)
T ss_dssp HHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHTTTH---H-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSE
T ss_pred HHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHhCC---H-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEE
Confidence 99998887654433344 67888777777765320 0 245677888899999999999875 788776666788
Q ss_pred EEEEeCCcchHHHHHHHHHHCCceEEeec-CCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 401 MPIMVYNPAKVSSFSRECLKQNVAIVTVG-FPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+++.+.......++.+.|.++||.+.+.. |...+.+.+++||+++.. |++|+++++++|+++++++
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 327 VWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp EEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 88877654457789999999999999732 222222457999999764 8999999999999998765
No 58
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=6.8e-32 Score=275.20 Aligned_cols=353 Identities=15% Similarity=0.120 Sum_probs=253.5
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----C---C-CC-eEEeCC
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----G---K-PA-AIVFGM 169 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g---~-~~-~i~~~s 169 (488)
++++|||+++.+-..+++++.+.+++.+++++.+... ..++......++++.+|+++ | . ++ ++++++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~----~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G 117 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYT----LQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVG 117 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHH----TSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEH
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhh----cCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEecc
Confidence 4678999765321123346789999999987642100 11122223478888888888 7 3 23 444455
Q ss_pred cHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q 040324 170 GYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVV 245 (488)
Q Consensus 170 Gs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi 245 (488)
|++++..++.+++++|+.|+++.++|+.+...++..|.+++.++.+ |+++|++.+++...+++ ++..+++++
T Consensus 118 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~----~~~~~~v~~ 193 (425)
T 1vp4_A 118 SQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGK----IKQVKFIYV 193 (425)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTC----GGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhccc----CCCceEEEE
Confidence 5667788888888999999999999999999999999999888763 89999998876321100 011344446
Q ss_pred EcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---cE
Q 040324 246 VEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GY 319 (488)
Q Consensus 246 ~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~ 319 (488)
+....+++|.+.+ +++|+++|++||++||+||+|+ .+..+|........+++.+.++++.||||++| +| ||
T Consensus 194 ~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~ 270 (425)
T 1vp4_A 194 VSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYG--ALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGM 270 (425)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSST--TCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEE
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCc--cccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEE
Confidence 7788888998876 7789999999999999999999 44444443222222223445788999999999 77 99
Q ss_pred EEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-----CCeecC
Q 040324 320 IAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-----GFEVLG 394 (488)
Q Consensus 320 i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~ 394 (488)
+++++++++.+......++++ .+++.++++.++|+.. ...+..++.+++++++.+++.+.|++. |+.+..
T Consensus 271 ~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~ 345 (425)
T 1vp4_A 271 VAGSKEFIRKIVQAKQSADLC--SPAITHRLAARYLERY---DLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVK 345 (425)
T ss_dssp EECCHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECC
T ss_pred EeeCHHHHHHHHHHhhhhcCC--CCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEec
Confidence 999999998887654433344 6888888888888752 011245677888899999999999875 688776
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeec-CCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 395 DNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVG-FPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
+.++.++++.+.......++.+.|+++||.+.+.. |...+.+.+++||+++. .|++|+++++++|+++++++.
T Consensus 346 ~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~e~i~~~l~~l~~~l~~~~ 419 (425)
T 1vp4_A 346 SEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL-PPDEKIVEGIKRLREVVLEYG 419 (425)
T ss_dssp CSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 66677888877643345678899999999999732 22222345799999975 489999999999999988764
No 59
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=7.7e-31 Score=264.18 Aligned_cols=345 Identities=13% Similarity=0.029 Sum_probs=240.4
Q ss_pred CCCCceEEEeeccccCCcccccccCCcc-----eeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhh
Q 040324 73 SAPDAWFDVVERYSNDNNKTLKRTNNVS-----RCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLAL 147 (488)
Q Consensus 73 ~~~G~~~~~~dr~~~~~~~~~~~~~~g~-----~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~ 147 (488)
++.|+++||.+ |+ ++|||+++.+ +++ .+|.+.+++.+++++....+. ..
T Consensus 11 ~~~~~~~~d~~---------------~~~~~~~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~y~-------~~-- 64 (390)
T 1d2f_A 11 HGTWCTQWDYV---------------ADRFGTADLLPFTISDM-DFA-TAPCIIEALNQRLMHGVFGYS-------RW-- 64 (390)
T ss_dssp ----------------------------------CEECCSSSC-SSC-CCHHHHHHHHHHHTTCCCCCC-------CS--
T ss_pred cCCCccchhhh---------------ccccCCCCeeEeeecCC-CCC-CCHHHHHHHHHHHhCCCCCCC-------CC--
Confidence 57899999987 54 7899975543 455 468899999998865212221 11
Q ss_pred HHH-HHHHHHHHh----C--C--CCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC----
Q 040324 148 HNE-LEECVARFV----G--K--PAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH---- 214 (488)
Q Consensus 148 ~~~-l~~~la~~~----g--~--~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~---- 214 (488)
..+ +++.+|+++ | . +.++++++|++++..+++++.++|+.|+++.++|+++...++..|.+++.++.
T Consensus 65 ~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 144 (390)
T 1d2f_A 65 KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQA 144 (390)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECS
T ss_pred ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCC
Confidence 346 888888876 4 2 34555556667778888888899999999999999999999999999988875
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCC
Q 040324 215 ----NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKT 287 (488)
Q Consensus 215 ----~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~ 287 (488)
.|+++|++.+++. ..+++++ ...++++|.+.+ +++|+++|++||++||+||+|+ .+.++
T Consensus 145 ~~~~~d~~~l~~~l~~~-----------~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~ 210 (390)
T 1d2f_A 145 DGWFCDMGKLEAVLAKP-----------ECKIMLL-CSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHM--DMVWG 210 (390)
T ss_dssp SSEECCHHHHHHHHTST-----------TEEEEEE-ESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTT--TCBCS
T ss_pred CccccCHHHHHHHhccC-----------CCeEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccc--ccccC
Confidence 3788888887531 1344444 466888898876 8999999999999999999999 55555
Q ss_pred CCCcchhcCCCCCCccEEEcccccccCCcc---cEEEeC-HHHHHHHHhhCC-CCcccCCCCHHHHHHHHHHHHHHhccC
Q 040324 288 GRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGS-KELIQYLKYNCP-AHLYATSISPPAAEQIISAIQVVIGED 362 (488)
Q Consensus 288 g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~-~~~~~~~~~~~~-~~~~~~~~~p~~~aa~~a~L~~i~~~~ 362 (488)
|........++++-.|. +.|+||++|.+| ||++++ +++++.+..... ..+++ +.+++.++++.++|+..
T Consensus 211 g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~---- 284 (390)
T 1d2f_A 211 EQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLS-SPSVLALTAHIAAYQQG---- 284 (390)
T ss_dssp SSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCC-SCCHHHHHHHHHHHHHC----
T ss_pred CCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccC-CCCHHHHHHHHHHHhcC----
Confidence 55433344443321255 789999998766 999874 788888766443 33331 37888888888888752
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCCCCeEEEEeCCc-chHHHHHHHHH-HCCceEEeecCCCccCCCC
Q 040324 363 GSCRGAQKLARIRENSNFFRSKLQK-M-GFEVLGDNDSPVMPIMVYNP-AKVSSFSRECL-KQNVAIVTVGFPATPLLLA 438 (488)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~ 438 (488)
.+..++.+++++++.+++.+.|++ + |+.+..+.++.++++.+... ....++.+.|+ ++||.+.+... +.+.+.+
T Consensus 285 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~-f~~~~~~ 362 (390)
T 1d2f_A 285 -APWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYT-YGEEGRG 362 (390)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGG-GCGGGTT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccc-cCCCCCC
Confidence 124567888899999999999988 5 77766555555556766532 35678999999 57999997332 1223357
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 439 RARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 439 ~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
++||+++. +++++++++++|+++++++
T Consensus 363 ~~Ris~~~--~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 363 FVRLNAGC--PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp EEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence 99999854 6899999999999998765
No 60
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-31 Score=267.59 Aligned_cols=330 Identities=14% Similarity=0.072 Sum_probs=245.3
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CCC-----CeEEeCC
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GKP-----AAIVFGM 169 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-----~~i~~~s 169 (488)
|+++|||+++.+ .++ .+|.+.+++.+++++.. ...++......++++.+|+++ |.+ +++++++
T Consensus 24 g~~~idl~~~~~-~~~-~~~~v~~a~~~~~~~~~------~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g 95 (376)
T 2dou_A 24 GVGLIDLSIGST-DLP-PPEAPLKALAEALNDPT------TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG 95 (376)
T ss_dssp TCCCEECSSCCC-CCC-CCHHHHHHHHHHTTCGG------GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred CCCEEeccCCCC-CCC-CCHHHHHHHHHHHhCCC------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence 788999976644 444 36788888888875421 112233345688999999988 753 4555555
Q ss_pred cHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC-----CCHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 040324 170 GYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH-----NTPSHLEEVLREQIAEGQPRTRRPWKKIMV 244 (488)
Q Consensus 170 Gs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~-----~d~~~Le~~l~~~~~~~~p~~~~~~~~~~v 244 (488)
|++++..+++++.++|+.|+++.++|+.+...++..|.+++.++. .|+++|++.+.. +..+|
T Consensus 96 ~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~-------------~~~~v 162 (376)
T 2dou_A 96 SQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWR-------------EAKVL 162 (376)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHH-------------HEEEE
T ss_pred cHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhcc-------------CceEE
Confidence 566778888888899999999999999999999999999998875 377888888864 23344
Q ss_pred EEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCC--cchhcCCCCCCccEEEcccccccCCcc--
Q 040324 245 VVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG--VCELLGVDTSDVDIMMGTFSKSFGSYG-- 317 (488)
Q Consensus 245 i~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~--~~~~~~v~p~~~di~~~t~sK~~g~~G-- 317 (488)
++...++++|.+.+ +++|+++|++||+++|+||+|+ .+..+|.. .....+ ..+.++++.|+||++|.+|
T Consensus 163 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r 238 (376)
T 2dou_A 163 LLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYV--DQVYEGEAPSPLALPG--AKERVVELFSLSKSYNLAGFR 238 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG--GGBSSSCCCCGGGSTT--GGGTEEEEEEHHHHHTCGGGC
T ss_pred EECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccch--hcccCCCCCChhhcCC--CCCcEEEEecchhhcCChhhe
Confidence 55567888998876 7899999999999999999999 44443322 233222 1345788899999998766
Q ss_pred -cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCC
Q 040324 318 -GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDN 396 (488)
Q Consensus 318 -g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 396 (488)
||+++++++++.+......++++ .+++.++++.++|+.. .+..++.+++++++.+++.+.|++. +.+..+.
T Consensus 239 ~G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 310 (376)
T 2dou_A 239 LGFALGSEEALARLERVKGVIDFN--QYAGVLRMGVEALKTP-----KEVVRGYARVYRERALGMAEALKGV-LSLLPPR 310 (376)
T ss_dssp CEEEEECHHHHHHHHHHHHHHCCC--SCHHHHHHHHHHHTSC-----HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCC
T ss_pred eEEEecCHHHHHHHHHHHHhcccC--CCHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCC
Confidence 99999999999887654433333 6888888877777542 2256778888999999999999988 7776555
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 397 DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
++.++++.+.......++.++|+++||.+.+... +.+.+.+++||+++ .+++++++++++|++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~-f~~~~~~~~Ris~~--~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 311 ATMYLWGRLPEGVDDLEFGLRLVERGVALAPGRG-FGPGGKGFVRIALV--RPLEELLEAAKRIREAL 375 (376)
T ss_dssp BSSEEEEECCTTCCHHHHHHHHHHTTEECEEGGG-GCGGGTTEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred eeEEEEEECCCCCCHHHHHHHHHHCCEEEcCchh-hCCCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 5667777776544567899999999999997321 12223579999985 48999999999998764
No 61
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=5.6e-31 Score=265.06 Aligned_cols=335 Identities=16% Similarity=0.105 Sum_probs=246.9
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC----CC-eEEeCCc
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK----PA-AIVFGMG 170 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~~-~i~~~sG 170 (488)
++++||+++.. .++ .++.+.+++.+++++....+ +......++++.+++++ |. ++ ++++++|
T Consensus 26 ~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~y-------~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~ 96 (389)
T 1gd9_A 26 KDVISLGIGEP-DFD-TPQHIKEYAKEALDKGLTHY-------GPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGA 96 (389)
T ss_dssp SSCEECCCCSC-SSC-CCHHHHHHHHHHHHTTCCSC-------CCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESST
T ss_pred cCeEecCCCCC-CCC-CCHHHHHHHHHHHhCCCCCC-------CCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCCh
Confidence 35789875542 333 46889999999887632222 12223367888888877 63 46 7777788
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
++++..++.++.++|+.|+++.++|+++...++..|.+++.++.+ |+++|++.+++ +..+
T Consensus 97 ~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------------~~~~ 163 (389)
T 1gd9_A 97 NQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD-------------KTRA 163 (389)
T ss_dssp THHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT-------------TEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc-------------CceE
Confidence 889988888888999999999999999999999999999888742 67788777643 2334
Q ss_pred EEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCC---CcchhcCCCCCCccEEEcccccccCCcc
Q 040324 244 VVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGR---GVCELLGVDTSDVDIMMGTFSKSFGSYG 317 (488)
Q Consensus 244 vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~---~~~~~~~v~p~~~di~~~t~sK~~g~~G 317 (488)
|++..+.+++|.+.+ +++|+++|++||+++|+||+|+. +..+|. ...++.+. .+.|+++.|+||++|.+|
T Consensus 164 v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~--~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G 239 (389)
T 1gd9_A 164 LIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEH--FIYDDARHYSIASLDGM--FERTITVNGFSKTFAMTG 239 (389)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT--CBCTTCCCCCGGGSTTC--GGGEEEEEESTTTTTCGG
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhh--cccCCCCCCCHhhccCC--CCCEEEEecChhhcCCcc
Confidence 555677888898874 99999999999999999999994 444443 22222121 356899999999998777
Q ss_pred ---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecC
Q 040324 318 ---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG 394 (488)
Q Consensus 318 ---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 394 (488)
||+++++++++.+.......+++ .+++.++++.++|+.... .+..++.+++++++.+++.+.|++.|+++..
T Consensus 240 ~r~G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 314 (389)
T 1gd9_A 240 WRLGFVAAPSWIIERMVKFQMYNATC--PVTFIQYAAAKALKDERS---WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVK 314 (389)
T ss_dssp GCCEEEECCHHHHHHHHHHHTTTTCS--CCHHHHHHHHHHHTCHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred cceEEEEECHHHHHHHHHHHhhhccC--CCHHHHHHHHHHHhCCCc---chHHHHHHHHHHHHHHHHHHHHHHcCCeecC
Confidence 99999999999888765544444 788888887777764310 0135677888999999999999998888776
Q ss_pred CCCCCeEEEEeCC-cchHHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 395 DNDSPVMPIMVYN-PAKVSSFSRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 395 ~~~~~~~~~~~~~-~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
+.++.++++.+.. .....++.+.|+ ++||.+.+... +.+.+.+++||+++ .+++++++++++|.+++++..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 315 PKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSA-FGKAGEGYVRISYA--TAYEKLEEAMDRMERVLKERK 387 (389)
T ss_dssp CCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGG-GCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHTT
T ss_pred CCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchh-hCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhcc
Confidence 5555555555532 235678999998 78999997332 12223578999985 499999999999999987653
No 62
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=5.1e-31 Score=261.83 Aligned_cols=323 Identities=11% Similarity=0.080 Sum_probs=249.5
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGK--PAAIVFGMGYVTNSS 176 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~ 176 (488)
|+++|||+++. ..++ .+|.+.+++.+++++. ..+ ..+...++++.+|++++. +.++++++|++++..
T Consensus 15 ~~~~i~l~~~~-~~~~-~~~~v~~a~~~~~~~~-~~y--------~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~ 83 (354)
T 3ly1_A 15 TDNPIRINFNE-NPLG-MSPKAQAAARDAVVKA-NRY--------AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRA 83 (354)
T ss_dssp SSSCEECSSCC-CSSC-CCHHHHHHHHHTGGGT-TSC--------CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHH
T ss_pred CCceEEccCCC-CCCC-CCHHHHHHHHHHHhhC-cCC--------CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHH
Confidence 89999998653 2333 4578888888887652 111 234568999999999996 356666777788888
Q ss_pred hhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCC
Q 040324 177 ILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYS 251 (488)
Q Consensus 177 ~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s 251 (488)
++.++.++|+.|+++.++|+++...++..|.+++.++.+ |+++|++.+++. +..+ +|++..+.+
T Consensus 84 ~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~----------~~~~-~v~l~~p~n 152 (354)
T 3ly1_A 84 AIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAY----------SGPS-IVYLVNPNN 152 (354)
T ss_dssp HHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTC----------SSCE-EEEEESSCT
T ss_pred HHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccC----------CCCC-EEEEeCCCC
Confidence 888889999999999999999999999999999999987 899999988731 1244 444567788
Q ss_pred CCCCCCChHHHHHHHHH--cCcEEEEEccccccccCCCCC--CcchhcCCCCCCccEEEcccccccCCcc---cEEEeCH
Q 040324 252 MEGELCKLPEIITICKR--YKAYTYLDEAHSIGAVGKTGR--GVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSK 324 (488)
Q Consensus 252 ~~G~~~~l~~l~~l~~~--~g~~li~DE~~s~g~~g~~g~--~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~ 324 (488)
++|.+.+.+++.++++. ||+++|+||+|+ .+...+. ......+.. .+.++++.|+||++|.+| ||+++++
T Consensus 153 ptG~~~~~~~l~~l~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 229 (354)
T 3ly1_A 153 PTGTITPADVIEPWIASKPANTMFIVDEAYA--EFVNDPRFRSISPMITQG-AENIILLKTFSKIHAMAGMRVGYAVAHP 229 (354)
T ss_dssp TTCCCCCHHHHHHHHHTCCTTEEEEEECTTG--GGCCCTTCCCSHHHHHTT-CSSEEEEEESSSTTCCGGGCCEEEECCH
T ss_pred CcCCCcCHHHHHHHHHhCCCCeEEEEeccHH--HhccccccCCHHHHhhhc-CCCEEEEeeChhhccChhhhheeeecCH
Confidence 99999998888888877 999999999999 5554443 222222211 145788999999998766 9999999
Q ss_pred HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEE
Q 040324 325 ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIM 404 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 404 (488)
++++.+...... + +.+++.++++.++|+.. +..++.+++++++.+++.+.|++.|+.+.. ..+.++++.
T Consensus 230 ~~~~~~~~~~~~--~--~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~ 298 (354)
T 3ly1_A 230 TVIALMGRYVAG--E--KINFSGVDAALASMNDS------AFITYSKKSNDVSRQILLKALEDLKLPYLP-SEGNFVFHQ 298 (354)
T ss_dssp HHHHHHGGGTTC--S--CCCHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CCSSEEEEE
T ss_pred HHHHHHHHhcCC--C--CCCHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHCCCeECC-CCceEEEEE
Confidence 999999876553 3 48888888888877632 256788889999999999999988887764 456677776
Q ss_pred eCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 405 VYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 405 ~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
+.. ...++.+.|.++||.+. ..++. ..+++||+++ |++|+++++++|++++++
T Consensus 299 ~~~--~~~~~~~~l~~~gi~v~-g~~~~---~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 299 LVV--PLKDYQTHMADAGVLIG-RAFPP---ADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CSS--CHHHHHHHHHHTTEECC-CCCTT---CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred CCC--CHHHHHHHHHHCCEEEe-ecCCC---CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 654 56789999999999887 33322 4579999973 899999999999998865
No 63
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=2.5e-31 Score=267.58 Aligned_cols=333 Identities=14% Similarity=0.130 Sum_probs=243.8
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC----CCeEEeCCc
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK----PAAIVFGMG 170 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~~~i~~~sG 170 (488)
|++++||+++.+ .++ .+|.+.+++.+++++....+ +......++++.+++++ |. ++++++++|
T Consensus 29 g~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~y-------~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 99 (388)
T 1j32_A 29 GIDVCSFSAGEP-DFN-TPKHIVEAAKAALEQGKTRY-------GPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG 99 (388)
T ss_dssp TCCCEECCCSSC-SSC-CCHHHHHHHHHHHHTTCCSC-------CCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred CCCEEECCCCCC-CCC-CCHHHHHHHHHHHhcCCCCC-------CCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCH
Confidence 788999976644 344 35788999998886531122 12222367777777776 32 345666667
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
++++..+++++..+|+.|+++.+.|+++...++..|.+++.++.+ |+++|++.+++ +..+
T Consensus 100 ~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------------~~~~ 166 (388)
T 1j32_A 100 KQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP-------------KTKL 166 (388)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT-------------TEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc-------------CceE
Confidence 888888888888999999999999999999999999999888753 67788777643 3345
Q ss_pred EEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC--CCccEEEcccccccCCcc-
Q 040324 244 VVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT--SDVDIMMGTFSKSFGSYG- 317 (488)
Q Consensus 244 vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p--~~~di~~~t~sK~~g~~G- 317 (488)
|+++++.+++|.+.+ +++|+++|++||+++|+||+|+ .+...|........+++ .+.|+++.|+||.+|.+|
T Consensus 167 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 167 LVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYE--KILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT--TCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccch--hcccCCCCCCCHHHccccccCCEEEEeechhccCCccc
Confidence 556677888998865 9999999999999999999999 44444432222222322 345889999999998666
Q ss_pred --cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecC
Q 040324 318 --GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLG 394 (488)
Q Consensus 318 --g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 394 (488)
|++++++++++.+.......+++ .+++.++++.++|+.. .++.++.+++++++.+++.+.|+++ |+.+..
T Consensus 245 r~G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 317 (388)
T 1j32_A 245 RVGFLAGPVPLVKAATKIQGHSTSN--VCTFAQYGAIAAYENS-----QDCVQEMLAAFAERRRYMLDALNAMPGLECPK 317 (388)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCS--CCHHHHHHHHHHHHSC-----SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCC
T ss_pred ceEEEEeCHHHHHHHHHHHhhcccC--CCHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC
Confidence 99999999998887654443444 6788777777777631 2356778889999999999999988 887766
Q ss_pred CCCCCeEEEEeCC-cchHHHHHHHHHH-CCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 395 DNDSPVMPIMVYN-PAKVSSFSRECLK-QNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 395 ~~~~~~~~~~~~~-~~~~~~~~~~l~~-~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+.++.++++.+.. .....++.+.|++ +||.+.+... +. ..+++|++++ ++++++++++++|+++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-~~--~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 318 PDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAA-FG--ADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp CCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGG-GT--CTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhh-hC--CCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 6555554444432 2356789999987 6999987321 11 1478999984 79999999999999998765
No 64
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.2e-31 Score=270.23 Aligned_cols=338 Identities=15% Similarity=0.122 Sum_probs=242.3
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC-----CCeEEeCC
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK-----PAAIVFGM 169 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~-----~~~i~~~s 169 (488)
|+++|||+++.. .++ .+|.+.+++.+++++.... .++......++++.+|+++ |. +.++++++
T Consensus 36 g~~~idl~~g~~-~~~-~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g 107 (412)
T 2x5d_A 36 GEDIIDLSMGNP-DGP-TPPHIVEKLCTVAQREDTH------GYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIG 107 (412)
T ss_dssp TCCCEECSSCCC-CSC-CCHHHHHHHHHTC---------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESC
T ss_pred CCCEEecCCCCC-CCC-CCHHHHHHHHHHHhCCCCC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCC
Confidence 788999976543 344 4678888888877653111 1122233478888888888 63 35777777
Q ss_pred cHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCC-------HHHHHHHHHHHHhcCCCCCCCCCceE
Q 040324 170 GYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNT-------PSHLEEVLREQIAEGQPRTRRPWKKI 242 (488)
Q Consensus 170 Gs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d-------~~~Le~~l~~~~~~~~p~~~~~~~~~ 242 (488)
|++++..++.+++++|+.|+++.+.|+.+...++..|.+++.++.++ +++|++.+.. ..++
T Consensus 108 ~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~------------~~~~ 175 (412)
T 2x5d_A 108 SKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIP------------KPRM 175 (412)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEES------------CCSE
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhccc------------CceE
Confidence 78888888888899999999999999999999999999999888652 3334333321 2445
Q ss_pred EEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC-CCccEEEcccccccCCcc-
Q 040324 243 MVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT-SDVDIMMGTFSKSFGSYG- 317 (488)
Q Consensus 243 ~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p-~~~di~~~t~sK~~g~~G- 317 (488)
+++ ..+.+++|.+.+ +++|+++|++||++||+||+|+ .+..+|........++. .+.|+++.|+||++|.+|
T Consensus 176 v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 252 (412)
T 2x5d_A 176 MIL-GFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYA--DIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGW 252 (412)
T ss_dssp EEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT--TCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTS
T ss_pred EEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecccc--ccccCCCCCCChhhccCccCcEEEEecCccccCCccc
Confidence 555 456788888775 7899999999999999999999 44443432111122211 346899999999998666
Q ss_pred --cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCC
Q 040324 318 --GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD 395 (488)
Q Consensus 318 --g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 395 (488)
||+++++++++.+.......++ +.+++.++++.++|+.. .++.++..++++++.+++.+.|++.|+.+..+
T Consensus 253 r~G~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 325 (412)
T 2x5d_A 253 RIGFMVGNPELVSALARIKSYHDY--GTFTPLQVAAIAALEGD-----QQCVRDIARQYQQRRDVLVKGLREAGWMVENP 325 (412)
T ss_dssp CCEEEEECHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHSC-----SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEEcCHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC
Confidence 9999999999888765432233 37888888888877642 23567888899999999999999888887665
Q ss_pred CCCCeEEEEeCCcc---hHHHHHHHHHH-CCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCC
Q 040324 396 NDSPVMPIMVYNPA---KVSSFSRECLK-QNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469 (488)
Q Consensus 396 ~~~~~~~~~~~~~~---~~~~~~~~l~~-~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~ 469 (488)
.++.++++.+.... ...++++.|++ +||.+.+.... .+.+.+++||+++. +++++++++++|.+++++++.
T Consensus 326 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f-~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 326 KASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGF-GDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp SBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGG-CGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTC
T ss_pred CeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhh-CCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCC
Confidence 55667777775332 46789999976 59999974321 22235799999964 899999999999999988653
No 65
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=4.4e-31 Score=265.12 Aligned_cols=330 Identities=18% Similarity=0.166 Sum_probs=246.1
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHhhh
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNSSI 177 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~ 177 (488)
..++||+++.+ .++ .++.+.+++.+++++ ...+ +......++++.++++++.+ +++++++|++++..+
T Consensus 25 ~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~-~~~y-------~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~ 94 (381)
T 1v2d_A 25 LGAVNLGQGFP-SNP-PPPFLLEAVRRALGR-QDQY-------APPAGLPALREALAEEFAVEPESVVVTSGATEALYVL 94 (381)
T ss_dssp HTCEECCCCSC-SSC-CCHHHHHHHHHHTTT-SCSC-------CCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred CCeEEecCCCC-CCC-CCHHHHHHHHHHHHH-hcCC-------CCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHH
Confidence 34788875433 333 467888999888865 2222 22233479999999999874 577777788888888
Q ss_pred hhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC--------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCc
Q 040324 178 LPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN--------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGI 249 (488)
Q Consensus 178 ~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~--------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v 249 (488)
+.++..+++.|+++.+.|+++...++..|.+++.++.+ |+++|++.+.+ +..+|+++.+
T Consensus 95 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-------------~~~~v~~~~~ 161 (381)
T 1v2d_A 95 LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP-------------RTRALLLNTP 161 (381)
T ss_dssp HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT-------------TEEEEEEESS
T ss_pred HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCc-------------CCEEEEECCC
Confidence 88888999999999999999998899999999888763 67888776642 3345555688
Q ss_pred CCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---cEEEeC
Q 040324 250 YSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGS 323 (488)
Q Consensus 250 ~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~ 323 (488)
.+++|.+.+ +++|+++|++||+++|+||+|+.+.+|..+.....+ ..++|+++.|++|++|.+| ||++++
T Consensus 162 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~----~~~~~~~~~s~sK~~~~~G~r~G~~~~~ 237 (381)
T 1v2d_A 162 MNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF----APERTFTVGSAGKRLEATGYRVGWIVGP 237 (381)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH----CTTTEEEEEEHHHHTTCGGGCCEEEECC
T ss_pred CCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh----cCCCEEEEeechhhcCCcccceEEEEeC
Confidence 889998876 899999999999999999999954444433333332 2356899999999998766 999999
Q ss_pred HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEE
Q 040324 324 KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPI 403 (488)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 403 (488)
+++++.+........++ .+++.++++.++|+... ..+..+++.++++++.+++.+.|++.|+++..+.++.++++
T Consensus 238 ~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 312 (381)
T 1v2d_A 238 KEFMPRLAGMRQWTSFS--APTPLQAGVAEALKLAR---REGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMA 312 (381)
T ss_dssp TTTHHHHHHHHHHHTSS--CCHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEE
T ss_pred HHHHHHHHHHHhhcccC--CCcHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCcceEEEE
Confidence 98888876543322333 77888888888887541 02256788899999999999999999998877666677777
Q ss_pred EeCCcchHHHHHHHHHHCCceEEeec-CCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 404 MVYNPAKVSSFSRECLKQNVAIVTVG-FPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 404 ~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
.+... . +.+.|.++||.+.+.. |...+.+.+++||+++. |++++++++++|++++++.
T Consensus 313 ~~~~~-~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 313 ELPGW-D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSP 371 (381)
T ss_dssp ECTTC-C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC---
T ss_pred ecChH-h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence 66543 2 6666778899999733 22212345799999864 9999999999999987664
No 66
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=7.6e-31 Score=268.25 Aligned_cols=340 Identities=13% Similarity=0.087 Sum_probs=244.0
Q ss_pred cCCCCCCccchHHHHHHHHHcCCCCC-------Ccc--cCCCChhhHHHHHHHHHHHhC----------CCCeEEeCCcH
Q 040324 111 LGFAAADEYCTPRVIDSLKKYSHSTC-------SSR--VDGGTLALHNELEECVARFVG----------KPAAIVFGMGY 171 (488)
Q Consensus 111 lg~~~~~~~v~~a~~~~l~~~~~~~~-------~~~--~~~g~~~~~~~l~~~la~~~g----------~~~~i~~~sGs 171 (488)
+|++.+ +.+.+++.+.+++...... .++ ..++......+|++++|++++ .++++++++|+
T Consensus 43 lg~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~ 121 (435)
T 3piu_A 43 MGLAEN-QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGAT 121 (435)
T ss_dssp CSSCCC-CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHH
T ss_pred eccccc-cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChH
Confidence 555544 4556777777776533111 001 112233334799999999987 35678888888
Q ss_pred HHHhhhhhcccCCCcEEEEeCCCchHHHHHHH-hcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 172 VTNSSILPVLMGKGSLIISDSLNHNSIVNGAR-GSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 172 ~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~-~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
+++..++.++.++++.|+++.++|+++...+. ..|.+++.++++ |+++|++.+++....+ .+..+
T Consensus 122 ~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~-------~~~~~ 194 (435)
T 3piu_A 122 SANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRN-------LRVKG 194 (435)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTT-------CCEEE
T ss_pred HHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcC-------CCeEE
Confidence 89999999999999999999999999988887 789999999875 7899999998743321 13445
Q ss_pred EEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC----------CCccEEEcccc
Q 040324 244 VVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT----------SDVDIMMGTFS 310 (488)
Q Consensus 244 vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p----------~~~di~~~t~s 310 (488)
|+++.+.+++|.+.+ +++|+++|++||++||+||+|+ .+++++........+.+ .+.+++++|||
T Consensus 195 v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~s 272 (435)
T 3piu_A 195 VLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYS--GTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLS 272 (435)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG--GGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESS
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccc--ccccCCCCCcCHHHhccccccccccCCCCCEEEEEeee
Confidence 666667888998875 6899999999999999999999 44444433221111111 23458889999
Q ss_pred cccCCcc---cEEEe-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Q 040324 311 KSFGSYG---GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQ 386 (488)
Q Consensus 311 K~~g~~G---g~i~~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 386 (488)
|++|.+| ||+++ ++++.+.+..... .+ ..+++.++++.+.|+... ...+..++.+++++++.+++++.|+
T Consensus 273 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~ 346 (435)
T 3piu_A 273 KDLGLPGFRVGAIYSNDDMVVAAATKMSS--FG--LVSSQTQHLLSAMLSDKK--LTKNYIAENHKRLKQRQKKLVSGLQ 346 (435)
T ss_dssp SSSCCGGGCEEEEEESCHHHHHHHHHHGG--GS--CCCHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCceeEEEEEeCCHHHHHHHHHHhh--cC--CCCHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999777 99988 5778887765433 12 256776666666655221 0011345677888999999999999
Q ss_pred hCCCeecCCCCCCeEEEEeCCcc------hHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHH
Q 040324 387 KMGFEVLGDNDSPVMPIMVYNPA------KVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICISASHTKEDLIEALEV 459 (488)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~ 459 (488)
+.|+++..+.++.++++.+.... ...+++++|+++ ||.+.+.. .+.+.+.+++||+++.. |++++++++++
T Consensus 347 ~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~-~~~~~~~~~iRi~~~~~-~~e~i~~~l~~ 424 (435)
T 3piu_A 347 KSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGS-SCHCTEPGWFRVCFANL-PERTLDLAMQR 424 (435)
T ss_dssp TTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGG-GGTCSSTTEEEEECSSS-CHHHHHHHHHH
T ss_pred hcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCc-ccCCCCCCEEEEEeeCC-CHHHHHHHHHH
Confidence 99998887766688888875432 456889999888 99999733 22234568999999544 99999999999
Q ss_pred HHHHHHHhC
Q 040324 460 ISRIGDLVG 468 (488)
Q Consensus 460 l~~~~~~~~ 468 (488)
|+++++++.
T Consensus 425 l~~~l~~~~ 433 (435)
T 3piu_A 425 LKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999998763
No 67
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=1.2e-30 Score=266.18 Aligned_cols=341 Identities=16% Similarity=0.189 Sum_probs=249.0
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC----C-CeEEeCCc
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK----P-AAIVFGMG 170 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~-~~i~~~sG 170 (488)
.++|||+++.+ .++ .+|.+.+++.+++++..... ..++......++++.+++++ |. + .++++++|
T Consensus 37 ~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~~----~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~ 110 (429)
T 1yiz_A 37 YKPLNLGQGFP-DYH-APKYALNALAAAANSPDPLA----NQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGA 110 (429)
T ss_dssp HCCEECCSSSC-SSC-CCHHHHHHHHHHHTCSCGGG----GSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHH
T ss_pred CCEEEecCCCC-CCC-CCHHHHHHHHHHHhccccCc----cCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecCh
Confidence 46899975543 444 46889999999987632110 11111122367777777775 52 3 56666666
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC---------------CCHHHHHHHHHHHHhcCCCCC
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH---------------NTPSHLEEVLREQIAEGQPRT 235 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~---------------~d~~~Le~~l~~~~~~~~p~~ 235 (488)
++++..++++++++|+.|+++.+.|+.+...++..|.+++.++. .|+++|++.+++
T Consensus 111 ~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--------- 181 (429)
T 1yiz_A 111 YEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE--------- 181 (429)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT---------
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhcc---------
Confidence 78888888888899999999999999999999999999888874 367777776642
Q ss_pred CCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCC-CCCccEEEccccc
Q 040324 236 RRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD-TSDVDIMMGTFSK 311 (488)
Q Consensus 236 ~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~-p~~~di~~~t~sK 311 (488)
+..+|+++++++++|.+.+ +++|+++|++||++||+||+|+ .+.++|.+......+. ..++|+++.|+||
T Consensus 182 ----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK 255 (429)
T 1yiz_A 182 ----KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE--HMVFEPFEHIRICTLPGMWERTITIGSAGK 255 (429)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT--TCBCTTSCCCCGGGSTTTGGGEEEEEEHHH
T ss_pred ----CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccc--ccccCCCCCcChhhccCCcCceEEEecchh
Confidence 3445555688999998885 9999999999999999999999 5555554322222231 2457899999999
Q ss_pred ccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHHHHHHHHH
Q 040324 312 SFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIG--EDGSCRGAQKLARIRENSNFFRSKLQ 386 (488)
Q Consensus 312 ~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~--~~~~~~~~~~~~~~~~~~~~l~~~L~ 386 (488)
++|.+| ||+++++++++.+.......+++ .+++.++++.++|+.... ....+..++.+++++++.+++.+.|+
T Consensus 256 ~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 333 (429)
T 1yiz_A 256 TFSLTGWKIGWAYGPEALLKNLQMVHQNCVYT--CATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLA 333 (429)
T ss_dssp HHTCGGGCCEEEESCHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcceEEEEeCHHHHHHHHHHHhhcccC--CChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999777 99999999999887654433444 788888888888876210 01134577888899999999999999
Q ss_pred hCCCeecCCCCCCeEEEEeCCc------------chHHHHHHHHH-HCCceEEee-cCCCcc---CCCCeEEEeecCCCC
Q 040324 387 KMGFEVLGDNDSPVMPIMVYNP------------AKVSSFSRECL-KQNVAIVTV-GFPATP---LLLARARICISASHT 449 (488)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~-~~Gi~v~~~-~~~~~~---~~~~~iRi~~~~~~t 449 (488)
+.|+.+..+.++.++++.+... ....++.++|+ ++||.+.+. .|...+ .+.+++||+++ .+
T Consensus 334 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~ 411 (429)
T 1yiz_A 334 EVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KK 411 (429)
T ss_dssp HHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SC
T ss_pred hCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CC
Confidence 8898887666677888877543 34568888887 679999863 222111 12579999995 59
Q ss_pred HHHHHHHHHHHHHHHH
Q 040324 450 KEDLIEALEVISRIGD 465 (488)
Q Consensus 450 ~edid~~l~~l~~~~~ 465 (488)
+++|++++++|+++++
T Consensus 412 ~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 412 DENLQKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999988753
No 68
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=3.8e-31 Score=266.46 Aligned_cols=324 Identities=20% Similarity=0.195 Sum_probs=240.6
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC----CCeEEeCCc
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK----PAAIVFGMG 170 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~~~i~~~sG 170 (488)
|++++||+++.+ .++. ++.+.+++.+++++....+ +..+...++++.+|+++ |. +.++++++|
T Consensus 40 g~~~i~l~~~~~-~~~~-~~~v~~a~~~~~~~~~~~y-------~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~ 110 (389)
T 1o4s_A 40 GEDVINLTAGEP-DFPT-PEPVVEEAVRFLQKGEVKY-------TDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGA 110 (389)
T ss_dssp TCCCEECCCSSC-SSCC-CHHHHHHHHHHHTTCCCCC-------CCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred CCCEEEccCCCC-CCCC-CHHHHHHHHHHHhcCCCCC-------CCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCH
Confidence 678899976544 3443 5788999998887632222 22223478888888887 53 356666777
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
++++..++.++.++|+.|+++.++|+++...++..|.+++.++.+ |+++|++.+++ +..+
T Consensus 111 t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------------~~~~ 177 (389)
T 1o4s_A 111 KQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG-------------KTKA 177 (389)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT-------------TEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc-------------CceE
Confidence 788888888888999999999999999999999999999988864 67777776643 2345
Q ss_pred EEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCC--cchhcCCCCCCccEEEcccccccCCcc-
Q 040324 244 VVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG--VCELLGVDTSDVDIMMGTFSKSFGSYG- 317 (488)
Q Consensus 244 vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~--~~~~~~v~p~~~di~~~t~sK~~g~~G- 317 (488)
|++..+.+++|.+.+ +++|+++|++||++||+||+|+. +...|.. ...+.+ ..+.|+++.|+||++|.+|
T Consensus 178 v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~--~~~~g~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~ 253 (389)
T 1o4s_A 178 VLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDS--LVYTDEFTSILDVSE--GFDRIVYINGFSKSHSMTGW 253 (389)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT--SBCSSCCCCHHHHCS--SSTTEEEEEESTTTTTCGGG
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc--cccCCCCCCHhhcCC--CCCcEEEEeechhhcCCccc
Confidence 556777888999877 99999999999999999999994 4433321 222211 1356899999999998766
Q ss_pred --cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCC
Q 040324 318 --GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD 395 (488)
Q Consensus 318 --g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 395 (488)
||+++++++++.+.......+++ .+++.++++.++|+. ..+++.++++++.+++.+.|+++|+++..+
T Consensus 254 r~G~l~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~--------~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 323 (389)
T 1o4s_A 254 RVGYLISSEKVATAVSKIQSHTTSC--INTVAQYAALKALEV--------DNSYMVQTFKERKNFVVERLKKMGVKFVEP 323 (389)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHTCS--CCHHHHHHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred ceEEEEeCHHHHHHHHHHhhhcccC--CCHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHhcCCeeecC
Confidence 99999999998887654432333 677777666665542 157788899999999999999988887666
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHH
Q 040324 396 NDSPVMPIMVYNPAKVSSFSRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~ 465 (488)
.++.++++.+. ....++.++|+ ++||.+.+...... .+++||+++ .+++++++++++|.++++
T Consensus 324 ~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 324 EGAFYLFFKVR--GDDVKFCERLLEEKKVALVPGSAFLK---PGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp SBSSEEEEECS--SCHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred CcceEEEEeCC--CCHHHHHHHHHHHCCEEEeCchhcCC---CCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 55566666664 34678999998 77999997321111 358999986 499999999999998764
No 69
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.98 E-value=1.5e-30 Score=265.42 Aligned_cols=337 Identities=14% Similarity=0.074 Sum_probs=252.5
Q ss_pred cceeEEeccccccC--CCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhC-------CCCeEEeCC
Q 040324 99 VSRCLNLGSYNYLG--FAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVG-------KPAAIVFGM 169 (488)
Q Consensus 99 g~~~ld~~s~~~lg--~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-------~~~~i~~~s 169 (488)
|+++|||+++.+.. -...++.+.+|+.+++++.... .++......++++.++++++ .++++++++
T Consensus 53 ~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g 126 (427)
T 3dyd_A 53 NKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN------GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSG 126 (427)
T ss_dssp TSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS------SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESS
T ss_pred CCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC------CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecC
Confidence 78899998665432 2334688999999988874211 11233345899999999998 245777777
Q ss_pred cHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceE
Q 040324 170 GYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKI 242 (488)
Q Consensus 170 Gs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~ 242 (488)
|++|+..++..+.++++.|+++.|+|..+...++..|.+++.++.+ |+++|++.+++ .++
T Consensus 127 ~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~------------~~~- 193 (427)
T 3dyd_A 127 CSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE------------KTA- 193 (427)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT------------TEE-
T ss_pred cHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc------------CCC-
Confidence 8888888888889999999999999999999999999999888753 77777776643 134
Q ss_pred EEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc--
Q 040324 243 MVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-- 317 (488)
Q Consensus 243 ~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-- 317 (488)
+|++....+++|.+.+ +++|+++|++||+++|+||+|+ .++++|........+.++...++++||||.+|.+|
T Consensus 194 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~--~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~r 271 (427)
T 3dyd_A 194 CLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYG--DMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWR 271 (427)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTT--TCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGC
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCch--hhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcc
Confidence 4445555889999998 9999999999999999999999 66666654322222223333577899999998877
Q ss_pred -cEEEeC-------HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-
Q 040324 318 -GYIAGS-------KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM- 388 (488)
Q Consensus 318 -g~i~~~-------~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 388 (488)
||++++ +++++.+...... ++ +.+++.++++.++|+... .+..++..++++++.+++.+.|+++
T Consensus 272 iG~~~~~~~~~~~~~~i~~~l~~~~~~-~~--~~~~~~~~a~~~~L~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~~ 344 (427)
T 3dyd_A 272 LGWILIHDRRDIFGNEIRDGLVKLSQR-IL--GPCTIVQGALKSILCRTP----GEFYHNTLSFLKSNADLCYGALAAIP 344 (427)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH-HC--CSCHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred eEEEEecCcchhhHHHHHHHHHHHHhc-cC--CCCHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998876 5777777654321 23 378888888888887531 1256778889999999999999998
Q ss_pred CCeecCCCCCCeEEEEeCCc-----chHHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHH
Q 040324 389 GFEVLGDNDSPVMPIMVYNP-----AKVSSFSRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISR 462 (488)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~ 462 (488)
|+.+..+.++.++++.+... ....+++++|+ ++||.+.+..... ..+++||++ .++++++++++++|++
T Consensus 345 g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~---~~~~iRis~--~~~~e~i~~~l~~l~~ 419 (427)
T 3dyd_A 345 GLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE---YPNFIRVVI--TVPEVMMLEACSRIQE 419 (427)
T ss_dssp TEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT---CTTEEEEES--CSCHHHHHHHHHHHHH
T ss_pred CceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC---CCCeEEEEE--CCCHHHHHHHHHHHHH
Confidence 88877677777777766421 34568888886 6799999733221 247999997 4899999999999999
Q ss_pred HHHHhC
Q 040324 463 IGDLVG 468 (488)
Q Consensus 463 ~~~~~~ 468 (488)
+++++.
T Consensus 420 ~l~~~~ 425 (427)
T 3dyd_A 420 FCEQHY 425 (427)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998764
No 70
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.98 E-value=1.3e-30 Score=262.59 Aligned_cols=330 Identities=15% Similarity=0.140 Sum_probs=240.8
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhC--------CCCeEEeCCc
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVG--------KPAAIVFGMG 170 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~~~i~~~sG 170 (488)
|+++|||+++. ..++. +|.+.+++.+++++....+ +......++++.++++++ .+.++++++|
T Consensus 30 g~~~i~l~~g~-~~~~~-~~~v~~a~~~~~~~~~~~y-------~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~ 100 (391)
T 3h14_A 30 GRRIIHMEVGQ-PGTGA-PRGAVEALAKSLETDALGY-------TVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGS 100 (391)
T ss_dssp TCCCEECCCSS-CSSCS-CHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred CCCeEEccCCC-CCCCC-CHHHHHHHHHHHhcCCCCC-------CCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecCh
Confidence 78999998654 23332 5778999988887632222 122223678888888763 2457777778
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
++++..++.++.++|+.|+++.++|..+...++..|.+++.++.+ |+++|++. + .+++
T Consensus 101 ~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~--~-------------~~~v 165 (391)
T 3h14_A 101 SGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL--D-------------LAGL 165 (391)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS--C-------------CSEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc--C-------------CeEE
Confidence 888888889999999999999999999999999999999999875 56665543 1 3444
Q ss_pred EEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---
Q 040324 244 VVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG--- 317 (488)
Q Consensus 244 vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G--- 317 (488)
+++.+.+++|.+.+ +++|+++|++||+++|+||+|+ .+..++... ..... .+.+++++|+||.+|.+|
T Consensus 166 -~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~~~~~-~~~~~--~~~~i~~~s~sK~~g~~G~r~ 239 (391)
T 3h14_A 166 -MVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYH--GIEYEAKAV-TALEL--TDECYVINSFSKYFSMTGWRV 239 (391)
T ss_dssp -EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT--TCBSSSCCC-CGGGT--CSSSEEEEESSSTTCCTTSCC
T ss_pred -EECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcch--hcccCCCCc-Chhhc--CCCEEEEEechhccCCcccee
Confidence 45577889999887 8999999999999999999999 444444321 11122 234788899999998666
Q ss_pred cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeec-CCC
Q 040324 318 GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL-GDN 396 (488)
Q Consensus 318 g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~ 396 (488)
||+++++++++.+......++++ .+++.++++.++|+. .+..++.+++++++.+++.+.|++.++... .+.
T Consensus 240 G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 311 (391)
T 3h14_A 240 GWMVVPEDQVRVVERIAQNMFIC--APHASQVAALAALDC------DAELQANLDVYKANRKLMLERLPKAGFTRIAPPD 311 (391)
T ss_dssp EEEECCGGGHHHHHHHHHHTTCC--CCHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCC
T ss_pred EEEEeCHHHHHHHHHHHhhhccC--CCHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 99999999998887655433344 788888777777751 125677888999999999999998876653 444
Q ss_pred CCCeEEEEeCC-cchHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 397 DSPVMPIMVYN-PAKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 397 ~~~~~~~~~~~-~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
++.++++.+.. .....++.++|+++ ||.+.+......+.+.+++||+++. +++++++++++|++++++..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 312 GAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp BTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC-
T ss_pred eeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhc
Confidence 55666776654 34677899998887 9999974322222345799999854 89999999999999988754
No 71
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.98 E-value=7.1e-31 Score=266.27 Aligned_cols=332 Identities=17% Similarity=0.117 Sum_probs=245.1
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCC--------CCeEEeCCc
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGK--------PAAIVFGMG 170 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--------~~~i~~~sG 170 (488)
|++++||+++.+ +++ .++.+.+++ +++++....+ +......++++.++++++. ++++++++|
T Consensus 42 g~~~i~l~~~~~-~~~-~~~~v~~a~-~~l~~~~~~y-------~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 111 (409)
T 2gb3_A 42 GVRIHHLNIGQP-DLK-TPEVFFERI-YENKPEVVYY-------SHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGG 111 (409)
T ss_dssp TCEEEECSSCCC-CSC-CCTHHHHHH-HHTCCSSCCC-------CCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred CCCEEeccCCCC-CCC-CCHHHHHHH-HHHhcCCCCC-------CCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence 788999986654 444 357888888 8775421122 2222347888888888742 457777788
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCC------HHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNT------PSHLEEVLREQIAEGQPRTRRPWKKIMV 244 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d------~~~Le~~l~~~~~~~~p~~~~~~~~~~v 244 (488)
++++..++.++.++|+.|+++.+.|+++...++..|.+++.++.++ +++|++.+++ +..+|
T Consensus 112 t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~-------------~~~~v 178 (409)
T 2gb3_A 112 SEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINE-------------RTKGI 178 (409)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCT-------------TEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCccHHHHHHhhCc-------------CCeEE
Confidence 8899888888889999999999999999999999999999988753 4555554432 23455
Q ss_pred EEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---c
Q 040324 245 VVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---G 318 (488)
Q Consensus 245 i~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g 318 (488)
+++.+.+++|.+.+ +++|+++|++||++||+||+|+. +..++....-..++ .+.|+++.|+||++|.+| |
T Consensus 179 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~--~~~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G 254 (409)
T 2gb3_A 179 VLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSE--IVFRGEFASALSIE--SDKVVVIDSVSKKFSACGARVG 254 (409)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT--CBCSSCCCCGGGSC--CTTEEEEEESTTTTTCGGGCCE
T ss_pred EECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccc--cccCCCCCCccccC--CCCEEEEecchhccCCccceEE
Confidence 56677888898764 89999999999999999999994 44444321112222 245899999999998766 9
Q ss_pred EEEeCH-HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCee-cCCC
Q 040324 319 YIAGSK-ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEV-LGDN 396 (488)
Q Consensus 319 ~i~~~~-~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~ 396 (488)
++++++ ++++.+......++ +.+++.++++.++|+.. .+..+++.++++++.+++.+.|++.|+.+ ..+.
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 326 (409)
T 2gb3_A 255 CLITRNEELISHAMKLAQGRL---APPLLEQIGSVGLLNLD-----DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPS 326 (409)
T ss_dssp EEECSCHHHHHHHHHHHHHSC---CCCHHHHHHHHHHHTCC-----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCS
T ss_pred EEEECcHHHHHHHHHHHhccC---CCCHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCC
Confidence 999988 89888876544322 47888888777777431 22467788889999999999999988877 6555
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHHC------CceEEeec-CCCc-cCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 397 DSPVMPIMVYNPAKVSSFSRECLKQ------NVAIVTVG-FPAT-PLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~l~~~------Gi~v~~~~-~~~~-~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
++.++++.+. .....++.+.|+++ ||.+.+.. |... +.+.+++||+++ +|++++++++++|+++++++.
T Consensus 327 ~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~ 403 (409)
T 2gb3_A 327 GAFYITAELP-VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFC 403 (409)
T ss_dssp BSSEEEEECS-SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEeC-CCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 5666666664 34567899999988 99998732 2211 234579999986 899999999999999998763
No 72
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.98 E-value=7.6e-31 Score=265.68 Aligned_cols=333 Identities=12% Similarity=0.087 Sum_probs=244.7
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcC-CCCCCcccCCCChhhHHHHHHHHHHHh----CCC-----CeEEeC
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYS-HSTCSSRVDGGTLALHNELEECVARFV----GKP-----AAIVFG 168 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~-~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-----~~i~~~ 168 (488)
|+++|||+++.+ .++ .+|.+.+++.+++++.. ..+ +......++++.+|+++ |.+ .+++++
T Consensus 46 g~~~idl~~g~~-~~~-~~~~v~~a~~~~~~~~~~~~y-------~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~ 116 (404)
T 2o1b_A 46 PLPLINMAVGIP-DGP-TPQGIIDHFQKALTIPENQKY-------GAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILY 116 (404)
T ss_dssp SSCCEECCCCSC-SSC-CCHHHHHHHHHHTTCHHHHSC-------CCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred CCCEEecCCcCC-CCC-CCHHHHHHHHHHHhCCCCCCC-------CCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcC
Confidence 678999986544 444 35788888888875420 111 12223478888888887 753 345555
Q ss_pred CcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceE
Q 040324 169 MGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKI 242 (488)
Q Consensus 169 sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~ 242 (488)
+|++++..+++++.++|+.|+++.++|+.+...++..|.+++.++.+ |+++|++.+.. +..
T Consensus 117 G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------------~~~ 183 (404)
T 2o1b_A 117 GTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIID-------------KTK 183 (404)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH-------------HEE
T ss_pred CcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhcc-------------Cce
Confidence 55677888888888999999999999999999999999999888753 67888888864 233
Q ss_pred EEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCC-CCCccEEEcccccccCCcc-
Q 040324 243 MVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD-TSDVDIMMGTFSKSFGSYG- 317 (488)
Q Consensus 243 ~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~-p~~~di~~~t~sK~~g~~G- 317 (488)
+|++....+++|.+.+ +++|+++|++||++||+||+|+. +..+|.. ....... ..+.++++.|+||++|.+|
T Consensus 184 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~--~~~~g~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 260 (404)
T 2o1b_A 184 LIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGA--FGFDAKN-PSILASENGKDVAIEIYSLSKGYNMSGF 260 (404)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTT--CBSSSCC-CCGGGSTTHHHHEEEEEESTTTTTCGGG
T ss_pred EEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchh--cccCCCC-CChhhcCCCCCCEEEEEecchhccCchh
Confidence 4555567888998875 88999999999999999999994 4433321 1112221 1246788999999998767
Q ss_pred --cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCC
Q 040324 318 --GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD 395 (488)
Q Consensus 318 --g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 395 (488)
||+++++++++.+......+++ +.+++.++++.++|+.. .+..++.+++++++.+++.+.|++.|+.+..+
T Consensus 261 r~G~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 333 (404)
T 2o1b_A 261 RVGFAVGNKDMIQALKKYQTHTNA--GMFGALQDAAIYALNHY-----DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHA 333 (404)
T ss_dssp CCEEEEECHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECC
T ss_pred heEeEecCHHHHHHHHHHHhhccC--CCCHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCC
Confidence 9999999999988765443233 37888888888888752 12567788889999999999999988887766
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHH-CCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 396 NDSPVMPIMVYNPAKVSSFSRECLK-QNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
.++.++++.+.......++.++|++ +||.+.+... +.+.+.+++||+++. +++++++++++|++++++
T Consensus 334 ~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~-f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 334 KGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKP-FGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp CBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGG-GCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchh-hCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 5556677777644456788999885 6999997321 122235799999964 889999999999887654
No 73
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.98 E-value=2.5e-30 Score=262.69 Aligned_cols=340 Identities=15% Similarity=0.145 Sum_probs=249.0
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCC--hhhHHHHHHHHHHHhCC---CCeEEeCCcHHH
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGT--LALHNELEECVARFVGK---PAAIVFGMGYVT 173 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~--~~~~~~l~~~la~~~g~---~~~i~~~sGs~a 173 (488)
|+++++|.++.+ + +.++.+.+++.++++++..........++. .+...++++.++++++. +.++++++|+++
T Consensus 26 g~~~i~l~~~~~-~--~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a 102 (420)
T 1t3i_A 26 GHPLVYLDNAAT-S--QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEA 102 (420)
T ss_dssp TEECEECBTTTC-C--CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred CCceEEecCCcc-C--CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHH
Confidence 678889875543 2 456899999999998753221111112222 35668999999999998 567788888889
Q ss_pred Hhhhhhcc----cCCCcEEEEeCCCchHH----HHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCc
Q 040324 174 NSSILPVL----MGKGSLIISDSLNHNSI----VNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWK 240 (488)
Q Consensus 174 ~~~~~~~~----~~~~~~Vl~~~~~h~~~----~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~ 240 (488)
+..++.++ .++|+.|+++.+.|++. ...++..|.+++.++.+ |+++|++.+++ +
T Consensus 103 ~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-------------~ 169 (420)
T 1t3i_A 103 INLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE-------------K 169 (420)
T ss_dssp HHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT-------------T
T ss_pred HHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC-------------C
Confidence 98888888 88999999999999984 44456778999888863 78888887753 3
Q ss_pred eEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cE
Q 040324 241 KIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GY 319 (488)
Q Consensus 241 ~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~ 319 (488)
..+|+++++.+++|.+.++++|.++|++||+++|+||+|+.|.... .. ..+ ++|+++.|++|.+|+.| |+
T Consensus 170 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~---~~-~~~-----~~di~~~s~sK~~~~~g~G~ 240 (420)
T 1t3i_A 170 TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPL---DV-QLI-----DCDWLVASGHKMCAPTGIGF 240 (420)
T ss_dssp EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC---CH-HHH-----TCSEEEEEGGGTTSCTTCEE
T ss_pred ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccC---ch-hhc-----CCCEEEEehhhhcCCCceEE
Confidence 4567788999999999999999999999999999999998543321 11 112 24899999999888766 99
Q ss_pred EEeCHHHHHHHHhhCCCC------------------cccCCCCHHHHHHHHH-HHHHHhccCCCchHHHHHHHHHHHHHH
Q 040324 320 IAGSKELIQYLKYNCPAH------------------LYATSISPPAAEQIIS-AIQVVIGEDGSCRGAQKLARIRENSNF 380 (488)
Q Consensus 320 i~~~~~~~~~~~~~~~~~------------------~~~~~~~p~~~aa~~a-~L~~i~~~~~~~~~~~~~~~~~~~~~~ 380 (488)
+++++++++.+.....+. .+..+.+++.+++++. +++.+... ..+++.++++++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~----~~~~~~~~~~~~~~~ 316 (420)
T 1t3i_A 241 LYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDL----GMENIHNYEVELTHY 316 (420)
T ss_dssp EEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHH
T ss_pred EEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHH
Confidence 999999988776443221 1222244444444444 67776321 346788899999999
Q ss_pred HHHHHHhC-CCeecCCC-----CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCc----cCC-CCeEEEeecCCCC
Q 040324 381 FRSKLQKM-GFEVLGDN-----DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPAT----PLL-LARARICISASHT 449 (488)
Q Consensus 381 l~~~L~~~-g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~----~~~-~~~iRi~~~~~~t 449 (488)
+.+.|+++ |+++..+. .+.++.+.+.. ....++.+.|.++||.+.+..++.. ..+ .+++||+++..+|
T Consensus 317 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~ 395 (420)
T 1t3i_A 317 LWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG-LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNT 395 (420)
T ss_dssp HHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT-BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCC
T ss_pred HHHHHHhCCCeEEeCCCccccccCCEEEEEECC-CCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCC
Confidence 99999998 88877654 26677666643 3466788889899999986321111 112 5789999988889
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 040324 450 KEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 450 ~edid~~l~~l~~~~~~~~ 468 (488)
++|+++++++|+++++.++
T Consensus 396 ~~~i~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 396 KEEIDLFLQSLQATIRFFS 414 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 74
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.98 E-value=3.6e-30 Score=260.19 Aligned_cols=339 Identities=14% Similarity=0.106 Sum_probs=243.7
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccC--CCChhhHHHHHHHHHHHhCC---CCeEEeCCcHHH
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVD--GGTLALHNELEECVARFVGK---PAAIVFGMGYVT 173 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~--~g~~~~~~~l~~~la~~~g~---~~~i~~~sGs~a 173 (488)
|+.+++|.++.. ++.++.+.+++.+++++........... +...+...++++.++++++. +.++++++|+++
T Consensus 21 g~~~i~l~~~~~---~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a 97 (406)
T 1kmj_A 21 GLPLAYLDSAAS---AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEG 97 (406)
T ss_dssp TEECEECCTTTC---CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred CCceEEecCCcc---CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHH
Confidence 555555543221 2457899999999998753222111111 12355678999999999998 346666777788
Q ss_pred Hhhhhhcc----cCCCcEEEEeCCCchHHHHH----HHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCc
Q 040324 174 NSSILPVL----MGKGSLIISDSLNHNSIVNG----ARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWK 240 (488)
Q Consensus 174 ~~~~~~~~----~~~~~~Vl~~~~~h~~~~~~----~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~ 240 (488)
+..++.++ .++++.|+++.+.|++.... ++..|.+++.++.+ |+++|++.+.+ +
T Consensus 98 ~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~-------------~ 164 (406)
T 1kmj_A 98 INLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE-------------K 164 (406)
T ss_dssp HHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT-------------T
T ss_pred HHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc-------------C
Confidence 88888888 78999999999999876433 55678999888864 68888887753 3
Q ss_pred eEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cE
Q 040324 241 KIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GY 319 (488)
Q Consensus 241 ~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~ 319 (488)
+.+|+++++++++|.+.++++|+++|++||+++|+||+|+.|... ..... .++|+++.|++|.+|..| |+
T Consensus 165 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~------~~~~~---~~~d~~~~s~~K~~g~~G~G~ 235 (406)
T 1kmj_A 165 TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHP------VDVQA---LDCDFYVFSGHKLYGPTGIGI 235 (406)
T ss_dssp EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSC------CCHHH---HTCSEEEEEGGGTTSCTTCEE
T ss_pred CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCC------Ccccc---cCCCEEEEEchhccCCCCcEE
Confidence 457778899999999999999999999999999999999854321 01111 134899999999998877 99
Q ss_pred EEeCHHHHHHHHhhCCCC-------------------cccCCCCHHHHHHHH-HHHHHHhccCCCchHHHHHHHHHHHHH
Q 040324 320 IAGSKELIQYLKYNCPAH-------------------LYATSISPPAAEQII-SAIQVVIGEDGSCRGAQKLARIRENSN 379 (488)
Q Consensus 320 i~~~~~~~~~~~~~~~~~-------------------~~~~~~~p~~~aa~~-a~L~~i~~~~~~~~~~~~~~~~~~~~~ 379 (488)
+++++++++.+.....+. .+..+.+++.+.+++ ++++.+... ..++..++++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~----~~~~~~~~~~~~~~ 311 (406)
T 1kmj_A 236 LYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSAL----GLNNIAEYEQNLMH 311 (406)
T ss_dssp EEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHH
T ss_pred EEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHc----CHHHHHHHHHHHHH
Confidence 999999988775433211 121223444444444 777776321 34678888999999
Q ss_pred HHHHHHHhC-CCeecCCC-CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCc----cC-CCCeEEEeecCCCCHHH
Q 040324 380 FFRSKLQKM-GFEVLGDN-DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPAT----PL-LLARARICISASHTKED 452 (488)
Q Consensus 380 ~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~----~~-~~~~iRi~~~~~~t~ed 452 (488)
++.+.|+++ |+++..+. .+.++.+.+. .....++.+.|.++||.+.+..+... .. ..+++||+++..+|++|
T Consensus 312 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~ 390 (406)
T 1kmj_A 312 YALSQLESVPDLTLYGPQNRLGVIAFNLG-KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEE 390 (406)
T ss_dssp HHHHHHTTSTTEEEESCTTCCSEEEEEET-TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHH
T ss_pred HHHHHHhcCCCeEEecCCCcCCEEEEEEC-CCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHH
Confidence 999999988 78877652 4566666653 23466788999999999986432111 01 14789999998899999
Q ss_pred HHHHHHHHHHHHHHh
Q 040324 453 LIEALEVISRIGDLV 467 (488)
Q Consensus 453 id~~l~~l~~~~~~~ 467 (488)
+++++++|+++++.+
T Consensus 391 i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 391 VDRLVTGLQRIHRLL 405 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998765
No 75
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.98 E-value=2.8e-30 Score=259.70 Aligned_cols=330 Identities=14% Similarity=0.187 Sum_probs=242.5
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC----C-CeEEeCCc
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK----P-AAIVFGMG 170 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~-~~i~~~sG 170 (488)
..+|||+++.+ .++ .+|.+.+++.+++++....+ +......++++.+++++ |. + .++++++|
T Consensus 30 ~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~y-------~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~ 100 (386)
T 1u08_A 30 HQAINLSQGFP-DFD-GPRYLQERLAHHVAQGANQY-------APMTGVQALREAIAQKTERLYGYQPDADSDITVTAGA 100 (386)
T ss_dssp TTCEECCCSSC-SSC-CCHHHHHHHHHHHHTTCCSC-------CCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSH
T ss_pred CCeEEecCCCC-CCC-CCHHHHHHHHHHHHhhccCC-------CCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCCh
Confidence 45789875543 344 46889999999887521122 11122367778887774 53 3 56666677
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMV 244 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~v 244 (488)
++++..++.++.++++.|+++.+.|+.+...++..|.+++.++.+ |+++|++.+.+ +..+|
T Consensus 101 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------------~~~~v 167 (386)
T 1u08_A 101 TEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSE-------------RTRLV 167 (386)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCT-------------TEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcc-------------cCEEE
Confidence 778888888888999999999999999999999999999888863 68888877642 23455
Q ss_pred EEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCC-CCCccEEEcccccccCCcc---
Q 040324 245 VVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD-TSDVDIMMGTFSKSFGSYG--- 317 (488)
Q Consensus 245 i~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~-p~~~di~~~t~sK~~g~~G--- 317 (488)
+++.+++++|.+.+ +++|+++|++||+++|+||+|+ .+..+|........++ ..+.|+++.|+||++|.+|
T Consensus 168 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 245 (386)
T 1u08_A 168 ILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYE--HINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKV 245 (386)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTT--TCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCC
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEcccc--ccccCCCCCcChhcccCccCcEEEEecchhhcCCcccce
Confidence 55678889998875 7999999999999999999999 5444443322222221 1345899999999999767
Q ss_pred cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCC
Q 040324 318 GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND 397 (488)
Q Consensus 318 g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 397 (488)
||+++++++++.+.......+++ .+++.++++.++|+.. .+..++.+++++++.+++.+.|++.|+.+..+.+
T Consensus 246 G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 318 (386)
T 1u08_A 246 GYCVAPAPISAEIRKVHQYLTFS--VNTPAQLALADMLRAE-----PEHYLALPDFYRQKRDILVNALNESRLEILPCEG 318 (386)
T ss_dssp EEEECCHHHHHHHHHHHHHHTSS--CCHHHHHHHHHHHHHC-----THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCB
T ss_pred EEEEcCHHHHHHHHHHHHhhccC--CChHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCc
Confidence 99999999998887654322333 6777777777787753 2256778889999999999999988988876666
Q ss_pred CCeEEEEeCCc--chHHHHHHHHH-HCCceEEee-cCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHH
Q 040324 398 SPVMPIMVYNP--AKVSSFSRECL-KQNVAIVTV-GFPATPLLLARARICISASHTKEDLIEALEVISR 462 (488)
Q Consensus 398 ~~~~~~~~~~~--~~~~~~~~~l~-~~Gi~v~~~-~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~ 462 (488)
+.++++.+... ....++.++|+ ++||.+.+. .|...+.+.+++||+++ .++++|++++++|++
T Consensus 319 g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 319 TYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp SSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 67788877543 35678888887 579999973 23332334579999995 589999999999854
No 76
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.98 E-value=8.2e-31 Score=265.53 Aligned_cols=332 Identities=15% Similarity=0.115 Sum_probs=244.2
Q ss_pred cceeEEecccccc--CCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhC------C--CCeEEeC
Q 040324 99 VSRCLNLGSYNYL--GFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVG------K--PAAIVFG 168 (488)
Q Consensus 99 g~~~ld~~s~~~l--g~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~--~~~i~~~ 168 (488)
|++++||+++.+. .++ .++.+.+++.+++++....+ +......++++.++++++ . +.+++++
T Consensus 37 g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y-------~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~ 108 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYY-------GDSEGLPELRKAIVEREKRKNGVDITPDDVRVTA 108 (406)
T ss_dssp TCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSC-------CCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCC-------CCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcC
Confidence 6789999766553 444 35788999999887632122 222233678888888772 2 3566667
Q ss_pred CcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCce
Q 040324 169 MGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKK 241 (488)
Q Consensus 169 sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~ 241 (488)
+|++++..++.++.++|+.|+++.+.|+++...++..|.+++.++.+ |+++|++.+++ +.
T Consensus 109 g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------------~~ 175 (406)
T 1xi9_A 109 AVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD-------------RT 175 (406)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT-------------TE
T ss_pred ChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc-------------Cc
Confidence 77888888888888999999999999999999999999998888753 68888877653 23
Q ss_pred EEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCc-cEEEcccccccCCc
Q 040324 242 IMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDV-DIMMGTFSKSFGSY 316 (488)
Q Consensus 242 ~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~-di~~~t~sK~~g~~ 316 (488)
.+|+++++++++|.+.+ +++|+++|++||++||+||+|+.+.+ .+.. ....++ .+. |++++|+||++|.+
T Consensus 176 ~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~--~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~ 250 (406)
T 1xi9_A 176 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY--EGEHISPGSLT---KDVPVIVMNGLSKVYFAT 250 (406)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBS--SSCCCCHHHHC---SSSCEEEEEESTTTTCCG
T ss_pred eEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccccc--CCCCCCHHHcC---CCceEEEEeccccccCCC
Confidence 44555678889998876 99999999999999999999995443 2222 122222 345 78899999999876
Q ss_pred c---cEEE--eCH----HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh
Q 040324 317 G---GYIA--GSK----ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQK 387 (488)
Q Consensus 317 G---g~i~--~~~----~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 387 (488)
| |+++ +++ ++++.+....... + +.+++.++++.++|+.. .+..++++++++++.+++.+.|++
T Consensus 251 G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~--~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~L~~ 322 (406)
T 1xi9_A 251 GWRLGYMYFVDPENKLSEVREAIDRLARIR-L--CPNTPAQFAAIAGLTGP-----MDYLKEYMKKLKERRDYIYKRLNE 322 (406)
T ss_dssp GGCCEEEEEECTTCTTHHHHHHHHHHHHHT-C--CSCSHHHHHHHHHHHSC-----CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEEecCchhHHHHHHHHHHHHHhh-c--CCCHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 9988 888 8988887543322 3 36777777777777531 224677888999999999999998
Q ss_pred C-CCeecCCCCCCeEEEEeCC--cchHHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 388 M-GFEVLGDNDSPVMPIMVYN--PAKVSSFSRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 388 ~-g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
+ ++.+..+.++.++++.+.. .....++.+.|+ ++||.+.+.... .+.+.+++||+++ ++++++++++++|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f-~~~~~~~lRis~~--~~~~~i~~~~~~l~~~ 399 (406)
T 1xi9_A 323 IPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGF-GEYGAGHFRAVFL--PPIEILEEAMDRFEKF 399 (406)
T ss_dssp STTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGG-CGGGTTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhc-CCCCCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 8 7777655555555555543 235678999998 779999873311 1223578999995 8999999999999999
Q ss_pred HHHh
Q 040324 464 GDLV 467 (488)
Q Consensus 464 ~~~~ 467 (488)
++++
T Consensus 400 l~~~ 403 (406)
T 1xi9_A 400 MKER 403 (406)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
No 77
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.98 E-value=4.4e-31 Score=271.14 Aligned_cols=342 Identities=16% Similarity=0.149 Sum_probs=245.3
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC-CCeEEeCCcHHH
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK-PAAIVFGMGYVT 173 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~-~~~i~~~sGs~a 173 (488)
|+++|||+++ +.+++ .+|.+.+++.+++++++.... ...++......+|++++++++ +. ++.+++++|+.+
T Consensus 68 ~~~~i~l~~g-~~~~~-~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~ 143 (449)
T 3qgu_A 68 DAKIISLGIG-DTTEP-LPKYIADAMAKAAAGLATREG--YSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKC 143 (449)
T ss_dssp TCCCEECSSC-CCCCC-CCHHHHHHHHHHHHGGGGSCC--CCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred CCCEEEeeCC-CCCCC-CCHHHHHHHHHHHHhhccccC--CCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHH
Confidence 7889999865 34554 368999999999987542111 112233344589999999998 43 356666666665
Q ss_pred HhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCe----------EEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 174 NSSILPVLMGKGSLIISDSLNHNSIVNGARGSGAT----------IRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 174 ~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~----------v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
+..++.++++++|.|+++.|+|+++...++..|.+ ++.+++++.+.+...+.+. +..+++
T Consensus 144 al~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v 213 (449)
T 3qgu_A 144 DIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA----------KRTDII 213 (449)
T ss_dssp HHHHHHHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC----------CCCSEE
T ss_pred HHHHHHHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc----------CCCCEE
Confidence 54333778899999999999999999999999988 8888877433322212110 124555
Q ss_pred EEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC-CCccEEEcccccccCCcc--
Q 040324 244 VVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT-SDVDIMMGTFSKSFGSYG-- 317 (488)
Q Consensus 244 vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p-~~~di~~~t~sK~~g~~G-- 317 (488)
+++ ...+++|.+.+ +++|+++|++||++||+||+|+ .+..+|........++. .++++++.||||++|.+|
T Consensus 214 ~l~-~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 290 (449)
T 3qgu_A 214 FFC-SPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYA--LYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVR 290 (449)
T ss_dssp EEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG--GGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCC
T ss_pred EEe-CCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchH--hhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccce
Confidence 554 77888998875 8899999999999999999999 55555533222222221 356788999999999777
Q ss_pred -cEEEeCHHHHH--------HHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC
Q 040324 318 -GYIAGSKELIQ--------YLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM 388 (488)
Q Consensus 318 -g~i~~~~~~~~--------~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 388 (488)
||+++++++++ .+...... .+ .+.+++.++++.++|+... .++.++++++++++.+++++.|++.
T Consensus 291 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~ 364 (449)
T 3qgu_A 291 LGWTVVPKALKYANGEPVHADWNRVMTT-CF-NGASNIVQAGGLACLQPEG----LKEMNAMIKFYKENAQILKTTFTEM 364 (449)
T ss_dssp CEEEECCTTCBCTTSCBHHHHHHHHHHH-SC-CCCCHHHHHHHHHHTSHHH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEecCHHHHhhhhhhHHHHHHHHhhc-cc-CCCCHHHHHHHHHHHhhcC----HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999887764 23222221 11 2378888888888776421 1256788899999999999999999
Q ss_pred CCeecCCCCCCeEEEEeCCcchHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 389 GFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
|+.+..+.++.++++.+. .....++++.|+++ ||.+.+.. .+.+.+.+++||++ ..|++++++++++|++++++-
T Consensus 365 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gI~v~pg~-~f~~~~~~~iRis~--~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 365 GFSVYGGDDAPYIWVGFP-GKPSWDVFAEILERCNIVTTPGS-GYGPAGEGFVRASA--FGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp TCCEEESSSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGG-GGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHC--
T ss_pred CCeeeCCCCeeEEEEECC-CCCHHHHHHHHHHHCCEEEecch-HhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHhc
Confidence 998877767888888876 45677899999987 99999733 22334568999985 569999999999999988654
No 78
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=1.1e-29 Score=253.02 Aligned_cols=317 Identities=15% Similarity=0.105 Sum_probs=242.1
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGK--PAAIVFGMGYVTNSS 176 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~ 176 (488)
++++|||+++.+ .++ .+|.+.+++.++++... .+ ..+...++++.++++++. +.++++++|++++..
T Consensus 31 ~~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~-~y--------~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~ 99 (363)
T 3ffh_A 31 LTKITKLSSNEN-PLG-TSKKVAAIQANSSVETE-IY--------PDGWASSLRKEVADFYQLEEEELIFTAGVDELIEL 99 (363)
T ss_dssp CSCCEECSSCSC-TTC-CCHHHHHHHHTCBSCCC-BC------------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred CCceEEccCCCC-CCC-CCHHHHHHHHHHHHHhh-cC--------CCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHH
Confidence 467899986532 232 34677777766554321 11 123458999999999996 356777777888888
Q ss_pred hhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCC
Q 040324 177 ILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYS 251 (488)
Q Consensus 177 ~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s 251 (488)
++.++.++++.|+++.++|..+...++..|.+++.++.+ |++++++.+.+ ++.+|+++.+.+
T Consensus 100 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------------~~~~v~~~~p~n 166 (363)
T 3ffh_A 100 LTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDE-------------KTTIVWICNPNN 166 (363)
T ss_dssp HHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT-------------TEEEEEEESSCT
T ss_pred HHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhccc-------------CCCEEEEeCCCC
Confidence 888889999999999999999999999999999999987 88998887753 344555677789
Q ss_pred CCCCCCChHHHHHHHHHc--CcEEEEEccccccccCCCCCC--cchhcCCCCCCccEEEcccccccCCcc---cEEEeCH
Q 040324 252 MEGELCKLPEIITICKRY--KAYTYLDEAHSIGAVGKTGRG--VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSK 324 (488)
Q Consensus 252 ~~G~~~~l~~l~~l~~~~--g~~li~DE~~s~g~~g~~g~~--~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~ 324 (488)
++|.+.+++++.++|+.+ |+++|+||+|+ .+.+ +.. .....+. .+.++++.|+||.+|.+| ||+++++
T Consensus 167 ptG~~~~~~~l~~l~~~~~~~~~li~De~~~--~~~~-~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 241 (363)
T 3ffh_A 167 PTGNYIELADIQAFLDRVPSDVLVVLDEAYI--EYVT-PQPEKHEKLVRT--YKNLIITRTFSKIYGLASARVGYGIADK 241 (363)
T ss_dssp TTCCCCCHHHHHHHHTTSCTTSEEEEECTTG--GGCS-SCCCCCGGGGGT--CTTEEEEEESSSTTCCSSCCCEEEEECH
T ss_pred CcCCCcCHHHHHHHHHhCCCCcEEEEeCchH--hhcC-ccccCHHHHhhc--CCCEEEEeechhhhcCchhceeeeecCH
Confidence 999999999999999888 99999999999 4444 322 2222222 344688899999998666 9999999
Q ss_pred HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh-CCCeecCCCCCCeEEE
Q 040324 325 ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQK-MGFEVLGDNDSPVMPI 403 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~ 403 (488)
++++.+..... .++ .+++.++++.++|+.. +..++..++++++.+++.+.|++ .|+.+..+ .+.++++
T Consensus 242 ~~~~~l~~~~~--~~~--~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~~~~~~ 310 (363)
T 3ffh_A 242 EIIRQLNIVRP--PFN--TTSIGQKLAIEAIKDQ------AFIGECRTSNANGIKQYEAFAKRFEKVKLYPA-NGNFVLI 310 (363)
T ss_dssp HHHHHHHHTCC--SCC--CBHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC-CSSEEEE
T ss_pred HHHHHHHHhCC--CCC--CCHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHhhCCCceECCC-CCeEEEE
Confidence 99999987655 333 8888888888888632 25678888999999999999999 78887644 4667777
Q ss_pred EeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 404 MVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 404 ~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
.+.. ...++.+.|.++||.+.+..... ..+++||+++ |++|+++++++|+++
T Consensus 311 ~~~~--~~~~~~~~l~~~gi~v~~g~~~~---~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 311 DLGI--EAGTIFSYLEKNGYITRSGAALG---FPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp ECSS--CHHHHHHHHHHTTEECEETTTTT---CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred ECCC--CHHHHHHHHHHCCeEEEeCccCC---CCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 6653 56789999999999999733221 1479999984 999999999999875
No 79
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.97 E-value=2.5e-30 Score=259.07 Aligned_cols=325 Identities=13% Similarity=0.046 Sum_probs=237.4
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC----CCeEEeCCc
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK----PAAIVFGMG 170 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~~~i~~~sG 170 (488)
| ++|||+++. ..++ .+|.+.+++.+++... ..+ +......++++.+|+++ |. +.++++++|
T Consensus 23 g-~~i~l~~~~-~~~~-~~~~v~~a~~~~~~~~-~~y-------~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~ 91 (376)
T 3ezs_A 23 K-RGLDLGIGE-PQFE-TPKFIQDALKNHTHSL-NIY-------PKSAFEESLRAAQRGFFKRRFKIELKENELISTLGS 91 (376)
T ss_dssp S-CCCBCSSCC-CCSC-CCHHHHHHHHTTGGGG-GSC-------CCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSS
T ss_pred C-CEEEeCCCC-CCCC-CCHHHHHHHHHhhhhc-CCC-------CCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCc
Confidence 6 899997654 2333 3577788877776332 122 11122356677777665 63 457777778
Q ss_pred HHHHhhhhhcccCC--CcEEEEeCCCchHHHHHHHhcCCeEEEeeCCCHH----HHHHHHHHHHhcCCCCCCCCCceEEE
Q 040324 171 YVTNSSILPVLMGK--GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPS----HLEEVLREQIAEGQPRTRRPWKKIMV 244 (488)
Q Consensus 171 s~a~~~~~~~~~~~--~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d~~----~Le~~l~~~~~~~~p~~~~~~~~~~v 244 (488)
++++..++.++.++ ++.|+++.++|+.+...++..|.+++.++.++.+ ++++.+.+. .++++
T Consensus 92 ~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~v~ 159 (376)
T 3ezs_A 92 REVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTPSLNEKELQE------------VDLVI 159 (376)
T ss_dssp HHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCCCCCHHHHHH------------CSEEE
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcchhHHhhhccC------------CCEEE
Confidence 88888888889999 9999999999999999999999999999876332 566666541 44444
Q ss_pred EEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCC--cchhcC---CCCCCccEEEcccccccCCc
Q 040324 245 VVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG--VCELLG---VDTSDVDIMMGTFSKSFGSY 316 (488)
Q Consensus 245 i~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~--~~~~~~---v~p~~~di~~~t~sK~~g~~ 316 (488)
+ ...++++|.+.+ +++|+++|++||++||+||+|+ .+..++.. .....+ .+..+.++++.|+||++|.+
T Consensus 160 ~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 160 L-NSPNNPTGRTLSLEELISWVKLALKHDFILINDECYS--EIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp E-CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT--TCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred E-cCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccch--hhccCCCCCCHHHccccccccccCcEEEEecchhccCCc
Confidence 4 466888998876 7788888999999999999999 55544432 222111 01245578899999999877
Q ss_pred c---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeec
Q 040324 317 G---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL 393 (488)
Q Consensus 317 G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 393 (488)
| ||+++++++++.+.......+++ .+++.++++.++|+.. +..++.+++++++.+++.+.|+ ++.
T Consensus 237 G~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~l~~~l~--~~~-- 304 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYKAFRAYLGYT--SANAIQKASEAAWLDD------RHAEFFRNIYANNLKLARKIFK--NTL-- 304 (376)
T ss_dssp GGCCEEEEECHHHHHHHHHHHTTTCCC--CCHHHHHHHHHHHHCS------HHHHHHHHHHHHHHHHHHHHST--TCC--
T ss_pred cceeEEEeeCHHHHHHHHHHHhhhcCC--CChHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHhc--CCC--
Confidence 7 99999999999998765544444 8888888888887742 2467788888999999999887 554
Q ss_pred CCCCCCeEEEEeCCcchHHHHHHHHHH-CCceEEeecCCCc-cCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 394 GDNDSPVMPIMVYNPAKVSSFSRECLK-QNVAIVTVGFPAT-PLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~~-~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
.+..+.++++.+. ...++.+.|++ +||.+.+...... +.+.+++||+++ .|++|+++++++|++++++
T Consensus 305 ~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 305 IYPYSFYVYLPVQ---NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp CCSBSSEEEEECS---CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHCC
T ss_pred CCCcceEEEEECC---CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence 4455677777765 46789999998 7999997432221 345689999985 4999999999999998764
No 80
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.97 E-value=1.9e-30 Score=264.00 Aligned_cols=340 Identities=13% Similarity=0.157 Sum_probs=248.0
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcC--CCCCCcccCCCChhhHHHHHHHHHHHhCC---------CCeEEe
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYS--HSTCSSRVDGGTLALHNELEECVARFVGK---------PAAIVF 167 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~--~~~~~~~~~~g~~~~~~~l~~~la~~~g~---------~~~i~~ 167 (488)
+..+|||+++. ..++ .+|.+.+++.+++++.. ..+ +......++++.++++++. ++++++
T Consensus 27 ~~~~i~l~~g~-~~~~-~~~~v~~a~~~~~~~~~~~~~y-------~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~ 97 (422)
T 3fvs_A 27 EHDVVNLGQGF-PDFP-PPDFAVEAFQHAVSGDFMLNQY-------TKTFGYPPLTKILASFFGELLGQEIDPLRNVLVT 97 (422)
T ss_dssp TSCCEECCCSS-CSSC-CCHHHHHHHHHHHHSCGGGGSC-------CCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEE
T ss_pred cCCceEeCCCC-CCCC-CCHHHHHHHHHHHhCCCccCCC-------CCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEE
Confidence 35678987554 2333 46888999999887632 122 1222235677777776652 356677
Q ss_pred CCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----------------CHHHHHHHHHHHHhc
Q 040324 168 GMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-----------------TPSHLEEVLREQIAE 230 (488)
Q Consensus 168 ~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----------------d~~~Le~~l~~~~~~ 230 (488)
++|++++..++..++.+++.|+++.++|+.+...++..|.+++.++.+ |+++|++.+++
T Consensus 98 ~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~---- 173 (422)
T 3fvs_A 98 VGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS---- 173 (422)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT----
T ss_pred CChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC----
Confidence 777778888888889999999999999999999999999999888753 67777766542
Q ss_pred CCCCCCCCCceEEEEEcCcCCCCCCCC---ChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC-CCccEEE
Q 040324 231 GQPRTRRPWKKIMVVVEGIYSMEGELC---KLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT-SDVDIMM 306 (488)
Q Consensus 231 ~~p~~~~~~~~~~vi~e~v~s~~G~~~---~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p-~~~di~~ 306 (488)
+..+|+++.+.+++|.+. ++++|+++|++||++||+||+|+ .+.++|........+.. .+.++++
T Consensus 174 ---------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (422)
T 3fvs_A 174 ---------RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ--WMVYDGHQHISIASLPGMWERTLTI 242 (422)
T ss_dssp ---------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT--TCBCTTCCCCCGGGSTTTGGGEEEE
T ss_pred ---------CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccch--hhccCCCCCCChhhcccccCcEEEE
Confidence 344556668889999988 49999999999999999999999 55555543222222221 2457889
Q ss_pred cccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHHHH
Q 040324 307 GTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIG--EDGSCRGAQKLARIRENSNFF 381 (488)
Q Consensus 307 ~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~--~~~~~~~~~~~~~~~~~~~~l 381 (488)
.|+||.+|.+| ||+++++++++.+.......+++ .+++.++++.++|+.... ....++.++++++++++.+++
T Consensus 243 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (422)
T 3fvs_A 243 GSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFH--CPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHM 320 (422)
T ss_dssp EEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred ecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCC--CCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999777 99999999999887655443444 788888888888874110 112346778899999999999
Q ss_pred HHHHHhCCCeecCCCCCCeEEEEeCCcch-------------HHHHHHHHHH-CCceEEeec-CCC---ccCCCCeEEEe
Q 040324 382 RSKLQKMGFEVLGDNDSPVMPIMVYNPAK-------------VSSFSRECLK-QNVAIVTVG-FPA---TPLLLARARIC 443 (488)
Q Consensus 382 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~-~Gi~v~~~~-~~~---~~~~~~~iRi~ 443 (488)
.+.|++.|+.+..+.++.++++.+..... ..++++.|++ +||.+.+.. |.. .+.+.+++||+
T Consensus 321 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis 400 (422)
T 3fvs_A 321 IRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC 400 (422)
T ss_dssp HHHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE
T ss_pred HHHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEE
Confidence 99999999988777777777776532110 4578888776 599999733 211 12456899998
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHH
Q 040324 444 ISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 444 ~~~~~t~edid~~l~~l~~~~~~ 466 (488)
++ .|+++|++++++|++++++
T Consensus 401 ~~--~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 401 FV--KDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHC
T ss_pred ec--CCHHHHHHHHHHHHHHHhh
Confidence 74 5999999999999998764
No 81
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.3e-29 Score=254.43 Aligned_cols=297 Identities=15% Similarity=0.195 Sum_probs=231.8
Q ss_pred hhhHHHHHHHHHHHhCCC--C-eEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchH--HHHHHHhcCCeEEEeeC-----
Q 040324 145 LALHNELEECVARFVGKP--A-AIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNS--IVNGARGSGATIRVFQH----- 214 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~--~-~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~--~~~~~~~~g~~v~~~~~----- 214 (488)
.+...++++.+++++|.+ + ++++++|++++..++.++.++++.|+++.+.|++ +...++..|.+++.++.
T Consensus 52 ~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 131 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKA 131 (386)
T ss_dssp HHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCCCC
Confidence 466789999999999976 4 5566777888888888888999999999999998 77778888999998886
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchh
Q 040324 215 NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCEL 294 (488)
Q Consensus 215 ~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~ 294 (488)
.|+++|++.+++. + +..+|+++++.+++|.+.++++|.++|++||++||+||+|+.|.+.
T Consensus 132 ~d~~~l~~~l~~~----------~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~--------- 191 (386)
T 2dr1_A 132 VKPEDLDDALRKN----------P-DVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD--------- 191 (386)
T ss_dssp CCHHHHHHHHHHC----------T-TCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBC---------
T ss_pred CCHHHHHHHHhcC----------C-CCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcc---------
Confidence 4899999988641 1 2345556689999999999999999999999999999999865442
Q ss_pred cCCCCCCccEEEcccccccCCc-c-cEEEeCHHHHHHHHh----------------h--CCCCcccCCCCHHHHHHHHHH
Q 040324 295 LGVDTSDVDIMMGTFSKSFGSY-G-GYIAGSKELIQYLKY----------------N--CPAHLYATSISPPAAEQIISA 354 (488)
Q Consensus 295 ~~v~p~~~di~~~t~sK~~g~~-G-g~i~~~~~~~~~~~~----------------~--~~~~~~~~~~~p~~~aa~~a~ 354 (488)
.++...++|+++.|++|+++++ | |++++++++++.+.. . ..... .+.++..++++.++
T Consensus 192 ~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~ 269 (386)
T 2dr1_A 192 IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTP--STPPMPQVFGINVA 269 (386)
T ss_dssp CCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCS--SCCCHHHHHHHHHH
T ss_pred ccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCC--CCCCHHHHHHHHHH
Confidence 1222234589999999999875 5 999999998877631 1 11112 24788888888888
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCC---CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCC
Q 040324 355 IQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDN---DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFP 431 (488)
Q Consensus 355 L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~ 431 (488)
|+.+... ...+++.++++++.+++.+.|++.|+++..+. .+.++++.+.......++.++|.++||.+.+...
T Consensus 270 l~~~~~~---g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~- 345 (386)
T 2dr1_A 270 LRIIEKM---GGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYG- 345 (386)
T ss_dssp HHHHHHT---TCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCG-
T ss_pred HHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCcc-
Confidence 8876321 02467889999999999999999888876653 2567777775445677899999999999986332
Q ss_pred CccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCC
Q 040324 432 ATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469 (488)
Q Consensus 432 ~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~ 469 (488)
+...+++||+++..+|++|+++++++|++++++++.
T Consensus 346 --~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 381 (386)
T 2dr1_A 346 --SVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELKK 381 (386)
T ss_dssp --GGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 123478999998889999999999999999987753
No 82
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=2.4e-30 Score=264.51 Aligned_cols=336 Identities=13% Similarity=0.026 Sum_probs=248.9
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcC-CCCCCcccCCCChhhHHHHHHHHHHHhC--------CCCeEEeCC
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYS-HSTCSSRVDGGTLALHNELEECVARFVG--------KPAAIVFGM 169 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~-~~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~~~i~~~s 169 (488)
|+++|||+++.+ .++ .+|.+.+++.+++++.. ..+ +......++++.+|++++ .++++++++
T Consensus 43 g~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~~y-------~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g 113 (437)
T 3g0t_A 43 GTKFCRMEMGVP-GLP-APQIGIETEIQKLREGVASIY-------PNLDGLPELKQEASRFAKLFVNIDIPARACVPTVG 113 (437)
T ss_dssp TCCCEECCCCSC-CSC-CCHHHHHHHHHHHHHTGGGSC-------CCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred CCCEEeccCcCC-CCC-CCHHHHHHHHHHHhCCcCcCC-------CCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCC
Confidence 788999986654 343 46889999999987622 222 122223688888888886 235666667
Q ss_pred cHHHHhhhhhccc--CCCc--EEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCC
Q 040324 170 GYVTNSSILPVLM--GKGS--LIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPW 239 (488)
Q Consensus 170 Gs~a~~~~~~~~~--~~~~--~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~ 239 (488)
|++++..++.++. ++|+ .|+++.++|.++...++..|.+++.++.+ |+++|++.+++ +.
T Consensus 114 ~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-----------~~ 182 (437)
T 3g0t_A 114 SMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQT-----------GQ 182 (437)
T ss_dssp HHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTT-----------TC
T ss_pred HHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhc-----------CC
Confidence 7778888888888 8999 99999999999999999999999998864 67888887732 12
Q ss_pred ceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCC-c-------chhcCCCCCCccEEEcc
Q 040324 240 KKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG-V-------CELLGVDTSDVDIMMGT 308 (488)
Q Consensus 240 ~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~-------~~~~~v~p~~~di~~~t 308 (488)
.++++++. +.+++|.+.+ +++|+++|++||++||+||+|+.+.++ +.. . ....+ ..+.++++.|
T Consensus 183 ~~~v~l~~-p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~i~~~s 257 (437)
T 3g0t_A 183 FCSIIYSN-PNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFR--KDYSHPGEPLYQPSVAN--YTDNYILALS 257 (437)
T ss_dssp CCEEEEES-SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTT--SCCCSTTSSCCCCCGGG--TCSCEEEEEE
T ss_pred ceEEEEeC-CCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccC--CCcCcccccchhhccCC--CCCcEEEEEc
Confidence 45555544 4888998886 788999999999999999999954444 221 2 12111 1345788999
Q ss_pred cccccCCcc---cEEEeCHHHHH-H-----------------HHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchH
Q 040324 309 FSKSFGSYG---GYIAGSKELIQ-Y-----------------LKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRG 367 (488)
Q Consensus 309 ~sK~~g~~G---g~i~~~~~~~~-~-----------------~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~ 367 (488)
+||.+|.+| ||+++++++++ . +........ .+.+++.++++.++|+.... .....
T Consensus 258 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~--~~~~~ 333 (437)
T 3g0t_A 258 SSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALS--SGATHSAQWGMAAMLKACND--GEYNF 333 (437)
T ss_dssp STTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHH--SSSCHHHHHHHHHHHHHHHT--TSCCH
T ss_pred CccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhc--CCCCHHHHHHHHHHHhCcHh--HHHHH
Confidence 999999766 99999999888 6 543322222 34888888888888887521 11126
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeec------CC-CCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeE
Q 040324 368 AQKLARIRENSNFFRSKLQKMGFEVL------GD-NDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARA 440 (488)
Q Consensus 368 ~~~~~~~~~~~~~l~~~L~~~g~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~i 440 (488)
++.+++++++.+++.+.|+++|+.+. .+ ..+.++++.+. .....++.+.|.++||.+.+.... .....+.+
T Consensus 334 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~gi~v~~~~~~-~~~~~~~i 411 (437)
T 3g0t_A 334 RDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK-GMDSSKLIEKFVRYGMCAITLKTT-GSKRNEAM 411 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET-TCCHHHHHHHHHHTTEECEESTTT-TCCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC-CCCHHHHHHHHHHcCeEEeecccc-CCCCCCEE
Confidence 78899999999999999999988877 34 56777887776 456778999999999999974322 22223679
Q ss_pred EEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 441 RICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 441 Ri~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
||+++ ..|++|+++++++|++++++
T Consensus 412 Ris~~-~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 412 RICTS-LLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp EEECS-SSCGGGHHHHHHHHHHHHHH
T ss_pred EEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 99997 44999999999999998753
No 83
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.97 E-value=9.2e-30 Score=256.72 Aligned_cols=328 Identities=17% Similarity=0.135 Sum_probs=238.1
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----C-----CC-CeEEeC
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----G-----KP-AAIVFG 168 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g-----~~-~~i~~~ 168 (488)
|+++|||+++. ..++ .+|.+.+++.++++.. ..+. ...|. .++++.+++++ | .+ .+++++
T Consensus 29 g~~~i~l~~~~-~~~~-~~~~v~~a~~~~~~~~-~~y~---~~~g~----~~lr~~la~~l~~~~g~~~~~~~~~i~~t~ 98 (396)
T 3jtx_A 29 GMEAVPLHIGE-PKHP-TPKVITDALTASLHEL-EKYP---LTAGL----PELRQACANWLKRRYDGLTVDADNEILPVL 98 (396)
T ss_dssp TCCCEECSCCS-CCSC-CCHHHHHHHHHTGGGG-GSCC---CTTCC----HHHHHHHHHHHHHHTTTCCCCTTTSEEEES
T ss_pred CCCeEEeCCcC-CCCC-CCHHHHHHHHHHhhhc-cCCC---CCCCc----HHHHHHHHHHHHHhcCCCCCCCCCeEEEcC
Confidence 89999998664 2333 3578888888877542 2221 11234 45666666554 5 23 556666
Q ss_pred CcHHHHhhhhhcccCCC-----cEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCC
Q 040324 169 MGYVTNSSILPVLMGKG-----SLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRR 237 (488)
Q Consensus 169 sGs~a~~~~~~~~~~~~-----~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~ 237 (488)
+|++++..++.++..++ +.|+++.++|+.+...++..|.+++.++.+ |+++|++.+.+
T Consensus 99 g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~----------- 167 (396)
T 3jtx_A 99 GSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWK----------- 167 (396)
T ss_dssp SHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH-----------
T ss_pred CcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc-----------
Confidence 66667788888888886 799999999999999999999999998853 77888888875
Q ss_pred CCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCC-CCc--chh---cCCCCCCccEEEcc
Q 040324 238 PWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTG-RGV--CEL---LGVDTSDVDIMMGT 308 (488)
Q Consensus 238 ~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g-~~~--~~~---~~v~p~~~di~~~t 308 (488)
..+++++ ...++++|.+.+ +++|+++|++||++||+||+|+ .+..++ ... .+. ++.+ .+.++++.|
T Consensus 168 -~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s 242 (396)
T 3jtx_A 168 -RTKLVFV-CSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYS--EIYFDGNKPLGCLQAAAQLGRS-RQKLLMFTS 242 (396)
T ss_dssp -TEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTT--TCCSTTCCCCCHHHHHHHTTCC-CTTEEEEEE
T ss_pred -CcEEEEE-ECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc--ccccCCCCCchHHhhhhhcccc-cCcEEEEec
Confidence 1444454 467889998876 5559999999999999999999 555554 221 111 1111 345788999
Q ss_pred cccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Q 040324 309 FSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKL 385 (488)
Q Consensus 309 ~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L 385 (488)
|||++|.+| ||+++++++++.+.......++ +.+++.++++.++|+. .+..++.+++++++.+++.+.|
T Consensus 243 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~------~~~~~~~~~~~~~~~~~l~~~l 314 (396)
T 3jtx_A 243 LSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGS--AMSIPVQRASIAAWDD------EQHVIDNRRLYQEKFERVIPIL 314 (396)
T ss_dssp STTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcccceEEEEeCHHHHHHHHHHHhhccc--CCCHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877 9999999999988765443233 4888888888888763 2356788889999999999999
Q ss_pred HhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHH-CCceEEeecCCCc-----cCCCCeEEEeecCCCCHHHHHHHHHH
Q 040324 386 QKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLK-QNVAIVTVGFPAT-----PLLLARARICISASHTKEDLIEALEV 459 (488)
Q Consensus 386 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~~-----~~~~~~iRi~~~~~~t~edid~~l~~ 459 (488)
++. +.+..+.++.++++.+.. ....++++.|++ +||.+.+..+... +.+.+++||+++ .|++++++++++
T Consensus 315 ~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~ 390 (396)
T 3jtx_A 315 QQV-FDVKLPDASFYIWLKVPD-GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALV--ADVATCVKAAED 390 (396)
T ss_dssp TTT-SCCCCCSSSSEEEEECTT-SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECC--SCHHHHHHHHHH
T ss_pred Hhc-CCccCCCeeEEEEEECCC-CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEc--CCHHHHHHHHHH
Confidence 876 455556666777777754 456788888966 4999998432222 234689999985 499999999999
Q ss_pred HHHHH
Q 040324 460 ISRIG 464 (488)
Q Consensus 460 l~~~~ 464 (488)
|++++
T Consensus 391 l~~~l 395 (396)
T 3jtx_A 391 IVSLY 395 (396)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98864
No 84
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.97 E-value=4.5e-30 Score=260.53 Aligned_cols=334 Identities=16% Similarity=0.114 Sum_probs=240.9
Q ss_pred eeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC----C-CeEEeCCcH
Q 040324 101 RCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK----P-AAIVFGMGY 171 (488)
Q Consensus 101 ~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~-~~i~~~sGs 171 (488)
.+|||+++.+ .++ .+|.+.+++.+++++....+ +......++++.+++++ |. + .++++++|+
T Consensus 26 ~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~y-------~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~ 96 (411)
T 2o0r_A 26 GAVNLGQGFP-DED-GPPKMLQAAQDAIAGGVNQY-------PPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGAT 96 (411)
T ss_dssp TCEESSCSSC-SSC-CCHHHHHHHHHHHHTTCCSC-------CCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHH
T ss_pred CeeeccCcCC-CCC-CCHHHHHHHHHHHhcCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHH
Confidence 4788875433 344 46889999999987621112 11222367778887776 53 3 566666777
Q ss_pred HHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC--------CCHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 172 VTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH--------NTPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 172 ~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~--------~d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
+++..++.++.++|+.|+++.+.|+++...++..|.+++.++. .|+++|++.+++ +..+
T Consensus 97 ~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-------------~~~~ 163 (411)
T 2o0r_A 97 EAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTP-------------RTRA 163 (411)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCT-------------TEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhcc-------------CceE
Confidence 8888888888899999999999999999999999999888875 378888887743 2345
Q ss_pred EEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCC-CCCccEEEcccccccCCcc--
Q 040324 244 VVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD-TSDVDIMMGTFSKSFGSYG-- 317 (488)
Q Consensus 244 vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~-p~~~di~~~t~sK~~g~~G-- 317 (488)
|+++.+.+++|.+.+ +++|+++|++||++||+||+|+ .+..+|........++ ..++|+++.|+||.+|.+|
T Consensus 164 v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 241 (411)
T 2o0r_A 164 LIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYE--HLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWK 241 (411)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT--TCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTC
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccc--ccccCCCCCcChhhccCCCCCEEEEeechhhcCCccce
Confidence 555678899998876 6999999999999999999999 4444444322222222 1356899999999998666
Q ss_pred -cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCC
Q 040324 318 -GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDN 396 (488)
Q Consensus 318 -g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 396 (488)
||+++++++++.+.......+++ .+++.++++.++|+.. .+..++.+++++++.+++.+.|++.|+.+..+.
T Consensus 242 ~G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 314 (411)
T 2o0r_A 242 IGWACGPAELIAGVRAAKQYLSYV--GGAPFQPAVALALDTE-----DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSY 314 (411)
T ss_dssp EEEEECCHHHHHHHHHHHHHHTSC--CCTTHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC
T ss_pred EEEEeeCHHHHHHHHHHHhhccCC--CChHHHHHHHHHHhCC-----hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCC
Confidence 99999999998887644322333 5566677777777652 124577888999999999999998898887665
Q ss_pred CCCeEEEEeCCc--chHHHHHHHHH-HCCceEEeec-C-CCc--------cCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 397 DSPVMPIMVYNP--AKVSSFSRECL-KQNVAIVTVG-F-PAT--------PLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 397 ~~~~~~~~~~~~--~~~~~~~~~l~-~~Gi~v~~~~-~-~~~--------~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
++.++++.+... ....++.++|+ ++||.+.+.. | +.. +.+.+++||+++ .+++|+++++++|+++
T Consensus 315 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~ 392 (411)
T 2o0r_A 315 GTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVL 392 (411)
T ss_dssp BSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGG
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 566777776531 34668888887 4699998732 2 111 113478999984 5899999999999887
Q ss_pred HHHh
Q 040324 464 GDLV 467 (488)
Q Consensus 464 ~~~~ 467 (488)
+++.
T Consensus 393 ~~~~ 396 (411)
T 2o0r_A 393 AERP 396 (411)
T ss_dssp GC--
T ss_pred Hhcc
Confidence 6554
No 85
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=4.8e-30 Score=256.92 Aligned_cols=327 Identities=14% Similarity=0.149 Sum_probs=246.5
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCC---CCeEEeCCcHHHHhh
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGK---PAAIVFGMGYVTNSS 176 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~---~~~i~~~sGs~a~~~ 176 (488)
..+.+++.+.++.++.+. .+++.+++......+ +..+...++++.++++++. ++++++++|++++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~y-------~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~ 96 (375)
T 3op7_A 27 VSISSLTLEELFALSGTN---PEDFYKKLQGTKLNY-------GWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLL 96 (375)
T ss_dssp CSCCCCCHHHHHHHHTCC---HHHHHHHHHTSCCSS-------CCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHH
T ss_pred CCCCCccHHHHHhhcccc---hHHHHHHHhcCCcCC-------CCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHH
Confidence 344455555555555332 277777776643333 3333447999999998742 567888888899999
Q ss_pred hhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCc
Q 040324 177 ILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGI 249 (488)
Q Consensus 177 ~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v 249 (488)
++.++.++||.|+++.++|+++...++..|++++.++.+ |+++|++.+++ ++.+|+++++
T Consensus 97 ~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------------~~~~v~~~~~ 163 (375)
T 3op7_A 97 VLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-------------TTKMICINNA 163 (375)
T ss_dssp HHHHHCCTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-------------TCCEEEEESS
T ss_pred HHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-------------CCeEEEEcCC
Confidence 999999999999999999999999999999999888754 88888887753 2335566788
Q ss_pred CCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCcc---cEEEe
Q 040324 250 YSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAG 322 (488)
Q Consensus 250 ~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~ 322 (488)
++++|.+.+ +++|+++|++||++||+||+|+ .++..+.. ..+. .+.+++++||||++|.+| ||+++
T Consensus 164 ~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~--~~~~~~~~~~~~~-----~~~~i~~~s~sK~~~~~G~r~G~v~~ 236 (375)
T 3op7_A 164 NNPTGAVMDRTYLEELVEIASEVGAYILSDEVYR--SFSELDVPSIIEV-----YDKGIAVNSLSKTYSLPGIRIGWVAA 236 (375)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSC--CCSSSCCCCHHHH-----CTTEEEEEESSSSSSCGGGCCEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccc--cccccCCCchhhh-----cCCEEEEeEChhhcCCcccceEEEEe
Confidence 999999999 9999999999999999999999 44433222 2222 233688889999998766 99999
Q ss_pred CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCeE
Q 040324 323 SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVM 401 (488)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 401 (488)
++++++.++.....++++ .+++.++++.++|+... ...++.+++++++.+++.+.|++. ++.+..+.++...
T Consensus 237 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 309 (375)
T 3op7_A 237 NHQVTDILRDYRDYTMIC--AGVFDDLVAQLALAHYQ-----EILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTS 309 (375)
T ss_dssp CHHHHHHHTTTGGGTTSC--CCHHHHHHHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCE
T ss_pred CHHHHHHHHHHHhhhccC--CCcHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEE
Confidence 999999987655543444 78888888888777532 145667777889999999999886 6677666666777
Q ss_pred EEEeCCcchHHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 402 PIMVYNPAKVSSFSRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
++.+.......++++.|+ ++||.+.+..... ..+++|+++ ..+++++++++++|+++++++.
T Consensus 310 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~---~~~~iRi~~--~~~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 310 FVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFE---RDGYVRLGF--ACEQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp EEEECCSSCHHHHHHHHHHHHCEECEEGGGGT---CTTEEEECC--CSCHHHHHHHHHHHHHHHGGGC
T ss_pred eEEcCCCCCHHHHHHHHHHhCCEEEeChhhhC---CCCeEEEEe--cCCHHHHHHHHHHHHHHHHHHh
Confidence 777776667788988885 6699999733221 147999987 4567999999999999998764
No 86
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.97 E-value=2.9e-31 Score=265.18 Aligned_cols=324 Identities=16% Similarity=0.206 Sum_probs=237.7
Q ss_pred CCCCccchHHHHHHHHHcCC-CCC-CcccCCCChhhHHHHHHH-HHHHhCCCCeEEeCCc-HHHHhhhhhcccCCCcEEE
Q 040324 114 AAADEYCTPRVIDSLKKYSH-STC-SSRVDGGTLALHNELEEC-VARFVGKPAAIVFGMG-YVTNSSILPVLMGKGSLII 189 (488)
Q Consensus 114 ~~~~~~v~~a~~~~l~~~~~-~~~-~~~~~~g~~~~~~~l~~~-la~~~g~~~~i~~~sG-s~a~~~~~~~~~~~~~~Vl 189 (488)
++.++.+.+++.+++..... .++ .+...++..+...++++. ++++++.+ .+++++| ++++..++.++.++++.|+
T Consensus 19 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl 97 (371)
T 2e7j_A 19 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLAKKDAWVV 97 (371)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCCCCEEE
Confidence 34467888888887765421 010 111222345667899999 99999988 6666665 6788888888889999999
Q ss_pred EeCCCchHHHHHHHhcCCeEEEee--CC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHH
Q 040324 190 SDSLNHNSIVNGARGSGATIRVFQ--HN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEI 262 (488)
Q Consensus 190 ~~~~~h~~~~~~~~~~g~~v~~~~--~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l 262 (488)
++.++|+++...++..|.+++.++ .+ |+++|++.+++.... .+..+|+++++++++|.+.++++|
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~--------~~~~~v~~~~~~nptG~~~~~~~i 169 (371)
T 2e7j_A 98 MDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR--------GEVVLALITYPDGNYGNLPDVKKI 169 (371)
T ss_dssp EETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT--------SCEEEEEEESSCTTTCCCCCHHHH
T ss_pred EccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhccc--------CCeEEEEEECCCCCCcccCCHHHH
Confidence 999999999999999999999998 65 899999998753110 145578889999999999999999
Q ss_pred HHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCc-c-cEEEeCHHHHHH-HHhhCCCCcc
Q 040324 263 ITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSY-G-GYIAGSKELIQY-LKYNCPAHLY 339 (488)
Q Consensus 263 ~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~-G-g~i~~~~~~~~~-~~~~~~~~~~ 339 (488)
+++|++||+++|+||+|+.+..+. . ...+ +.|+++.|++|+++++ + |++++++++++. +.....++..
T Consensus 170 ~~~~~~~~~~li~D~a~~~~~~~~---~-~~~~-----~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
T 2e7j_A 170 AKVCSEYDVPLLVNGAYAIGRMPV---S-LKEI-----GADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNK 240 (371)
T ss_dssp HHHHHTTTCCEEEECTTTBTTBCC---C-HHHH-----TCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTS
T ss_pred HHHHHHcCCeEEEECccccCCCCC---C-hhhc-----CCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCccc
Confidence 999999999999999999654321 1 1112 2379999999998764 3 999999888776 6543332222
Q ss_pred -----cCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHH--HHHHHHHHHHHHhCCCeecCCC--CCCeEEEEeCCcch
Q 040324 340 -----ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARI--RENSNFFRSKLQKMGFEVLGDN--DSPVMPIMVYNPAK 410 (488)
Q Consensus 340 -----~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~~~ 410 (488)
+.+.++..++++.++++.+. . +..+++ +++.+++.+.|++.|+++..+. .++++++.+. .
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~l~~~~-------~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---~ 309 (371)
T 2e7j_A 241 EVELLGCTARGATIITLMASFPHVR-------E-RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE---V 309 (371)
T ss_dssp BGGGTTCCCCSHHHHHHHHHHHHHH-------H-HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECH---H
T ss_pred ccccccCCcCHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCccCceEEEECC---C
Confidence 34467777777888888763 1 567777 8899999999998888887654 3677777664 5
Q ss_pred HHHHHHHHHHCCceEEeecCCCc---cCCCCeEE-EeecCC-CCHHHHHHHHHHHHHHHHHh
Q 040324 411 VSSFSRECLKQNVAIVTVGFPAT---PLLLARAR-ICISAS-HTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 411 ~~~~~~~l~~~Gi~v~~~~~~~~---~~~~~~iR-i~~~~~-~t~edid~~l~~l~~~~~~~ 467 (488)
..++.+.|.++||.+.+ ..... ....+.+| ++++.. +|++|+++++++|+++++++
T Consensus 310 ~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 310 LYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 67899999988999876 22111 11247899 999877 89999999999999998765
No 87
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.97 E-value=1.9e-28 Score=248.15 Aligned_cols=299 Identities=19% Similarity=0.240 Sum_probs=231.9
Q ss_pred hhhHHHHHHHHHHHhCCCC---eEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchH--HHHHHHhcCCeEEEeeCC----
Q 040324 145 LALHNELEECVARFVGKPA---AIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNS--IVNGARGSGATIRVFQHN---- 215 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~---~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~--~~~~~~~~g~~v~~~~~~---- 215 (488)
.+...++++.++++++.+. +++.++|++++..++.++.++++.|++..+.|.+ +...++..|.+++.++.+
T Consensus 45 ~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 124 (411)
T 3nnk_A 45 THYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEV 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 3566899999999999753 3455577888988888889999999999999977 777788889999998876
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchh
Q 040324 216 -TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCEL 294 (488)
Q Consensus 216 -d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~ 294 (488)
|+++|++.+++. +..+|+++++.+++|.+.++++|+++|++||+++|+||+|+.+...
T Consensus 125 ~d~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~--------- 183 (411)
T 3nnk_A 125 FTPDQVEDAVKRI------------RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNP--------- 183 (411)
T ss_dssp CCHHHHHHHHHHH------------CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBC---------
T ss_pred CCHHHHHHHHhhC------------CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcc---------
Confidence 899999998752 2346666778999999999999999999999999999999854432
Q ss_pred cCCCCCCccEEEccccccc-CCcc-cEEEeCHHHHHHHHhhC----------------------------------CCCc
Q 040324 295 LGVDTSDVDIMMGTFSKSF-GSYG-GYIAGSKELIQYLKYNC----------------------------------PAHL 338 (488)
Q Consensus 295 ~~v~p~~~di~~~t~sK~~-g~~G-g~i~~~~~~~~~~~~~~----------------------------------~~~~ 338 (488)
++....++|+++.|++|++ |..| |+++.++++++.+.... ....
T Consensus 184 ~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 263 (411)
T 3nnk_A 184 LETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERL 263 (411)
T ss_dssp CCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCC
T ss_pred cchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccC
Confidence 1222234689999999985 4455 99999999998887543 0001
Q ss_pred ccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCC---CCeEEEEeCCcchHHHHH
Q 040324 339 YATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND---SPVMPIMVYNPAKVSSFS 415 (488)
Q Consensus 339 ~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~ 415 (488)
...+.+...++++.++++.+... ..++..++++++.+++.+.|++.|+.+..+.. ..++++.+.......++.
T Consensus 264 ~~~~~~~~~~~a~~~al~~~~~~----g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 339 (411)
T 3nnk_A 264 NHHTEATTALFGARECARLILQE----GLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQAR 339 (411)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCCHHHHH
Confidence 12246777777777888876321 25688899999999999999999888765443 456666665455677899
Q ss_pred HHHHHC-CceEEeecCCCccCCCCeEEEee-cCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 040324 416 RECLKQ-NVAIVTVGFPATPLLLARARICI-SASHTKEDLIEALEVISRIGDLVGIKY 471 (488)
Q Consensus 416 ~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~-~~~~t~edid~~l~~l~~~~~~~~~~~ 471 (488)
+.|+++ ||.+.+ ++ .+...+++||++ +..+|++|+++++++|++++++++.+.
T Consensus 340 ~~l~~~~gi~v~~-g~--~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~ 394 (411)
T 3nnk_A 340 KLMLEDFGIEIGT-SF--GPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLKFPT 394 (411)
T ss_dssp HHHHHHHSEEEEE-CC--GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhcCeEEeC-cc--CCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 999988 999986 22 223457999998 777899999999999999999887553
No 88
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.97 E-value=5.5e-29 Score=248.49 Aligned_cols=320 Identities=15% Similarity=0.141 Sum_probs=243.3
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCC-CCCCcccCCCChhhHHHHHHHHHHHhCC---CCeEEeCCcHHHH
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSH-STCSSRVDGGTLALHNELEECVARFVGK---PAAIVFGMGYVTN 174 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~g~---~~~i~~~sGs~a~ 174 (488)
.+++|||+++. ..++ .+|.+.+++.+++++... .+ +. +...++++.+++++|. +.++++++|++++
T Consensus 29 ~~~~i~l~~~~-~~~~-~~~~v~~a~~~~~~~~~~~~y-------~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~ 98 (367)
T 3euc_A 29 SHGLVKLDAME-NPYR-LPPALRSELAARLGEVALNRY-------PV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEII 98 (367)
T ss_dssp CTTCEECCSSC-CCCC-CCHHHHHHHHHHHHHHHTTCS-------CC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHH
T ss_pred CCCeeEccCCC-CCCC-CCHHHHHHHHHHhhhhhhhcC-------CC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHH
Confidence 46789998654 2333 468999999999885321 12 11 2358999999999997 3456666677778
Q ss_pred hhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCc
Q 040324 175 SSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGI 249 (488)
Q Consensus 175 ~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v 249 (488)
..++.++.++|+.|+++.++|..+...++..|.+++.++.+ |+++|++.+++. ..+ +|++..+
T Consensus 99 ~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-----------~~~-~v~~~~~ 166 (367)
T 3euc_A 99 SMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEH-----------QPA-IVYLAYP 166 (367)
T ss_dssp HHHHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHH-----------CCS-EEEEESS
T ss_pred HHHHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhcc-----------CCC-EEEEcCC
Confidence 88888889999999999999999988899999999998854 899999998763 134 4444578
Q ss_pred CCCCCCCCC---hHHHHHHHHHc--CcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---cEEE
Q 040324 250 YSMEGELCK---LPEIITICKRY--KAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIA 321 (488)
Q Consensus 250 ~s~~G~~~~---l~~l~~l~~~~--g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~ 321 (488)
++++|.+.+ +++|+++|++| |+++|+||+|+ .++..+ .....+ ..+.++++.|+||. +.+| ||++
T Consensus 167 ~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~--~~~~~~--~~~~~~--~~~~~i~~~s~sK~-~~~G~r~G~~~ 239 (367)
T 3euc_A 167 NNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQ--PFAQES--WMSRLT--DFGNLLVMRTVSKL-GLAGIRLGYVA 239 (367)
T ss_dssp CTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTC--CSSSCC--SGGGGG--TCTTEEEEEECCCT-TSCSCCEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcch--hhcccc--hHHHHh--hCCCEEEEecchhh-cccccCceeee
Confidence 888998864 88888899999 99999999998 554322 222222 23457888999999 7666 9999
Q ss_pred eCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCe
Q 040324 322 GSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPV 400 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 400 (488)
+++++++.+...... ++ .+++.++++.++|+.. +..++..++++++.+++.+.|+++ |+.+. +..+.+
T Consensus 240 ~~~~~~~~~~~~~~~--~~--~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~ 308 (367)
T 3euc_A 240 GDPQWLEQLDKVRPP--YN--VNVLTEATALFALEHV------AVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANF 308 (367)
T ss_dssp ECHHHHHHHGGGCCS--SC--CCHHHHHHHHHHHTTH------HHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSE
T ss_pred eCHHHHHHHHHhCCC--CC--CCHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeE
Confidence 999999988766542 33 7888888888887652 145788889999999999999998 88864 445677
Q ss_pred EEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHH
Q 040324 401 MPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~ 465 (488)
+++.+. ...++.+.|.++||.+.+... +.+...+++||+++ |++|+++++++|+++++
T Consensus 309 ~~~~~~---~~~~l~~~l~~~gi~v~~~~~-~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 309 LLARVP---DAAQTFDRLLARKVLIKNVSK-MHPLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp EEEECS---CHHHHHHHHHTTTEECEECGG-GCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred EEEECC---CHHHHHHHHHHCCeEEEECCc-cCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 777665 567889999999999997432 12334589999974 99999999999998753
No 89
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=1.6e-29 Score=251.73 Aligned_cols=326 Identities=17% Similarity=0.190 Sum_probs=244.3
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGK--PAAIVFGMGYVTNSS 176 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~ 176 (488)
|+.+|||+++.+ .++ .+|.+.+++.+++++.+... ..++ .+...++++.+|+++|. +.++++++|++++..
T Consensus 25 ~~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~~----~~y~-~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~ 97 (360)
T 3hdo_A 25 IASWIKLNTNEN-PYP-PSPEVVKAILEELGPDGAAL----RIYP-SASSQKLREVAGELYGFDPSWIIMANGSDEVLNN 97 (360)
T ss_dssp CTTSEECSSCCC-SSC-CCHHHHHHHHHHHTTTCGGG----GSCC-CSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred ccceeeccCCCC-CCC-CCHHHHHHHHHHHhcccchh----hcCC-CCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHH
Confidence 788999986644 343 46889999999887732101 0111 11237999999999985 467777788888888
Q ss_pred hhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCC
Q 040324 177 ILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGEL 256 (488)
Q Consensus 177 ~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~ 256 (488)
++.+++++||.|+++.++|..+...++..|.+++.++.++...+++ +.+. ...+ ++++..+++++|.+
T Consensus 98 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~----------~~~~-~v~i~~p~nptG~~ 165 (360)
T 3hdo_A 98 LIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRIAG-FPER----------YEGK-VFFLTTPNAPLGPS 165 (360)
T ss_dssp HHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSBTT-CCSS----------BCSS-EEEEESSCTTTCCC
T ss_pred HHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCHHH-HHhh----------cCCC-EEEEeCCCCCCCCC
Confidence 8899999999999999999999999999999999998764222211 1110 0133 55567778999999
Q ss_pred CChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhh
Q 040324 257 CKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYN 333 (488)
Q Consensus 257 ~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~ 333 (488)
.+++++.++|+++|++||+||+|+ .+... ......+ ..+.++++.|+||++|.+| ||+++++++++.+...
T Consensus 166 ~~~~~l~~l~~~~~~~li~De~~~--~~~~~--~~~~~~~--~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~ 239 (360)
T 3hdo_A 166 FPLEYIDELARRCAGMLVLDETYA--EFAES--NALELVR--RHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKI 239 (360)
T ss_dssp CCHHHHHHHHHHBSSEEEEECTTG--GGSSC--CCTHHHH--HCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHCCCEEEEECChH--hhCCc--chhHHhc--cCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHh
Confidence 999999999999999999999999 45322 2222221 1234688899999998766 9999999999999876
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCCcchHHH
Q 040324 334 CPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSS 413 (488)
Q Consensus 334 ~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (488)
... ++ .+++.++++.++|+.. ++.++.+++++++.+++.+.|++.|+.+.. ..+.++++.+. .....+
T Consensus 240 ~~~--~~--~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 307 (360)
T 3hdo_A 240 RDH--YN--LDRLAQAACVAALRDQ------AYLSECCRRIRETREWFTTELRSIGYDVIP-SQGNYLFATPP-DRDGKR 307 (360)
T ss_dssp SCS--CC--SCHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHTTCEECC-CSSSEEEEECT-TCCHHH
T ss_pred CCC--CC--CCHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHCCCEEcC-CCccEEEEECC-CCCHHH
Confidence 543 33 8888888888888742 246788899999999999999999888764 45667776554 345678
Q ss_pred HHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 414 FSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 414 ~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+.+.|.++||.+.+.+. +...+++||+++ |++|+|+++++|+++.+..
T Consensus 308 l~~~l~~~gi~v~~~~~---~~~~~~iRis~~---~~~e~~~l~~al~~~~~~~ 355 (360)
T 3hdo_A 308 VYDGLYARKVLVRHFSD---PLLAHGMRISIG---TREEMEQTLAALKEIGEGH 355 (360)
T ss_dssp HHHHHHHTTEECBCCCS---TTTTTSEEEECC---CHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHCCEEEEECCC---CCCCCEEEEEcC---CHHHHHHHHHHHHHHhccc
Confidence 99999999999986432 334579999984 9999999999999876543
No 90
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=1.3e-29 Score=256.86 Aligned_cols=336 Identities=16% Similarity=0.169 Sum_probs=244.6
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCC-CCCCcccCCCChhhHHHHHHHHHHHhC------C---CCeEEeC
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSH-STCSSRVDGGTLALHNELEECVARFVG------K---PAAIVFG 168 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~g------~---~~~i~~~ 168 (488)
+..+|||+++. ..++ .+|.+.+++.+++++... .+ +......++++.++++++ . +++++++
T Consensus 22 ~~~~i~l~~~~-~~~~-~~~~v~~a~~~~~~~~~~~~y-------~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~ 92 (410)
T 3e2y_A 22 DPSVVNLGQGF-PDIS-PPSYVKEELSKAAFIDNMNQY-------TRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAV 92 (410)
T ss_dssp STTSEECSSCC-CCSC-CCHHHHHHHHHHHTCGGGGSC-------CCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEES
T ss_pred CCCeEEecCCC-CCCC-CCHHHHHHHHHHHhCccccCC-------CCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeC
Confidence 46789998554 2333 357889999988875311 12 122223678888888775 1 4566666
Q ss_pred CcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC----------------CHHHHHHHHHHHHhcCC
Q 040324 169 MGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN----------------TPSHLEEVLREQIAEGQ 232 (488)
Q Consensus 169 sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~----------------d~~~Le~~l~~~~~~~~ 232 (488)
+|++++..++.+++++++.|+++.++|+.+...++..|.+++.++.+ |+++|++.+++
T Consensus 93 g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~------ 166 (410)
T 3e2y_A 93 GAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS------ 166 (410)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT------
T ss_pred CcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC------
Confidence 77788888888889999999999999999999999999998888754 77888776642
Q ss_pred CCCCCCCceEEEEEcCcCCCCCCCC---ChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCC-CCCccEEEcc
Q 040324 233 PRTRRPWKKIMVVVEGIYSMEGELC---KLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD-TSDVDIMMGT 308 (488)
Q Consensus 233 p~~~~~~~~~~vi~e~v~s~~G~~~---~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~-p~~~di~~~t 308 (488)
+..+|+++.+++++|.+. ++++|+++|++||+++|+||+|+ .+.++|.......... ..+.++++.|
T Consensus 167 -------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S 237 (410)
T 3e2y_A 167 -------KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE--WLVYTGHTHVKIATLPGMWERTITIGS 237 (410)
T ss_dssp -------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT--TCBCTTCCCCCGGGSTTCGGGEEEEEE
T ss_pred -------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh--hcccCCCCCCCHHHcCCccCeEEEEec
Confidence 344556678899999885 69999999999999999999999 5555554322222221 1245688899
Q ss_pred cccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHHHHHH
Q 040324 309 FSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIG--EDGSCRGAQKLARIRENSNFFRS 383 (488)
Q Consensus 309 ~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~--~~~~~~~~~~~~~~~~~~~~l~~ 383 (488)
+||.+|.+| ||+++++++++.+.......+++ .+++.++++.++|+.... ....+..++..++++++.+++.+
T Consensus 238 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 315 (410)
T 3e2y_A 238 AGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYT--CATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVR 315 (410)
T ss_dssp HHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCCceEEEEEECHHHHHHHHHHHHhhccC--CChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999777 99999999999887655443444 788888888888874110 11234677888999999999999
Q ss_pred HHHhCCCeecCCCCCCeEEEEeCCcc-----------hHHHHHHHHHH-CCceEEeecCCCc----cCCCCeEEEeecCC
Q 040324 384 KLQKMGFEVLGDNDSPVMPIMVYNPA-----------KVSSFSRECLK-QNVAIVTVGFPAT----PLLLARARICISAS 447 (488)
Q Consensus 384 ~L~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~-~Gi~v~~~~~~~~----~~~~~~iRi~~~~~ 447 (488)
.|++.|+.+..+.++.++++.+.... ...++++.+++ +||.+.+...... +.+.+++||++ .
T Consensus 316 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~--~ 393 (410)
T 3e2y_A 316 LLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCF--I 393 (410)
T ss_dssp HHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEEC--C
T ss_pred HHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEE--c
Confidence 99999998877777777777664211 13477777764 5999997332111 12358999987 5
Q ss_pred CCHHHHHHHHHHHHH
Q 040324 448 HTKEDLIEALEVISR 462 (488)
Q Consensus 448 ~t~edid~~l~~l~~ 462 (488)
+|+++|++++++|++
T Consensus 394 ~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 394 KKDSTLDAAEEIFRA 408 (410)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 599999999999875
No 91
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.97 E-value=3.5e-30 Score=263.09 Aligned_cols=341 Identities=16% Similarity=0.167 Sum_probs=243.0
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC-CCeEEeCCcHHH
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK-PAAIVFGMGYVT 173 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~-~~~i~~~sGs~a 173 (488)
++++|||+++++. +. .+|.+.+|+.+++++++..... ..++......+|++.+++++ +. ++.+++++|+.+
T Consensus 55 ~~~~i~l~~~~~~-~~-~~~~v~~a~~~~~~~~~~~~~~--~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~ 130 (432)
T 3ei9_A 55 DAQVISLGIGDTT-EP-IPEVITSAMAKKAHELSTIEGY--SGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKC 130 (432)
T ss_dssp TCCCEECSSCCCC-SC-CCHHHHHHHHHHHHHTTSTTTC--CCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred CCCeEEccCCCCC-CC-CCHHHHHHHHHHHhcccccCCc--cCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHH
Confidence 6789999987765 43 4689999999999876542221 12233344589999999996 43 456777777776
Q ss_pred HhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCC------------eEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCce
Q 040324 174 NSSILPVLMGKGSLIISDSLNHNSIVNGARGSGA------------TIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKK 241 (488)
Q Consensus 174 ~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~------------~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~ 241 (488)
+..++..++++||.|+++.|+|+++...++..|. ++..++.++.+.+...+++ . +..+
T Consensus 131 al~~l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~-----~~~~ 200 (432)
T 3ei9_A 131 DISRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V-----GRTD 200 (432)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C-----CCCS
T ss_pred HHHHHHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C-----CCCC
Confidence 6555677889999999999999999988888774 5667776532222111211 0 1245
Q ss_pred EEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-
Q 040324 242 IMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG- 317 (488)
Q Consensus 242 ~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G- 317 (488)
+++++ ..++++|.+.+ +++|+++|++||++||+||+|+.+.++..+.....+.+. .+++++++||||++|.+|
T Consensus 201 ~v~l~-~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~G~ 277 (432)
T 3ei9_A 201 IIFFC-SPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGA--EEVAMETASFSNYAGFTGV 277 (432)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTG--GGTEEEEEESHHHHCTTTT
T ss_pred EEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCC--CCeEEEEecchhccCCccc
Confidence 55554 67889998775 778888899999999999999955454333333332221 345789999999999777
Q ss_pred --cEEEeCHHH--------HHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh
Q 040324 318 --GYIAGSKEL--------IQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQK 387 (488)
Q Consensus 318 --g~i~~~~~~--------~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 387 (488)
||+++++++ ++.+........ .+.+++.++++.+++... ..++.++++++++++.+++++.|++
T Consensus 278 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~l~~~L~~ 351 (432)
T 3ei9_A 278 RLGWTVIPKKLLYSDGFPVAKDFNRIICTCF--NGASNISQAGALACLTPE----GLEAMHKVIGFYKENTNIIIDTFTS 351 (432)
T ss_dssp CCEEEECCTTCBCTTSCBHHHHHHHHHHHSC--CCSCHHHHHHHHHHSSHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEChHHhhcchHHHHHHHHHHhcccc--CCCCHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877 666654322112 237788877777776421 0124678889999999999999999
Q ss_pred CCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 388 MGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
.|+.+..+.+++++++.+. .....++++.|+++ ||.+.+.. .+.+.+.+++||++ ..+++++++++++|++-...
T Consensus 352 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~~g~-~f~~~~~~~iRis~--~~~~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 352 LGYDVYGGKNAPYVWVHFP-NQSSWDVFAEILEKTHVVTTPGS-GFGPGGEGFVRVSA--FGHRENILEACRRFKQLYKH 427 (432)
T ss_dssp TTCCEEECSSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGG-GGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHTT
T ss_pred CCceecCCCcceEEEEECC-CCCHHHHHHHHHHHCCEEEeCch-HhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHhhh
Confidence 9988876667788888876 44566888888876 99999733 22344568999997 66999999999999876543
No 92
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.97 E-value=3.1e-28 Score=244.09 Aligned_cols=295 Identities=17% Similarity=0.206 Sum_probs=228.7
Q ss_pred hhhHHHHHHHHHHHhCCCC----eEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchH--HHHHHHhcCCeEEEeeCC---
Q 040324 145 LALHNELEECVARFVGKPA----AIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNS--IVNGARGSGATIRVFQHN--- 215 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~----~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~--~~~~~~~~g~~v~~~~~~--- 215 (488)
.+...++++.++++++.+. ++++++|++++. ++..+.+++|.|++..+.|.+ +...++..|.+++.++.+
T Consensus 34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 112 (384)
T 3zrp_A 34 VEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGD 112 (384)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCCC
Confidence 5667899999999999864 677777888888 888889999999999988866 334456779999988865
Q ss_pred --CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcch
Q 040324 216 --TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCE 293 (488)
Q Consensus 216 --d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~ 293 (488)
|+++|++.+.+. +..+|+++++.+++|.+.++++|.++|++||++||+||+|+.+...
T Consensus 113 ~~d~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-------- 172 (384)
T 3zrp_A 113 YVKPGEVEEEVRKS------------EYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEE-------- 172 (384)
T ss_dssp CCCHHHHHHHHHHS------------CEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSC--------
T ss_pred CCCHHHHHHHHHhC------------CCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCcc--------
Confidence 899999998762 3557777889999999999999999999999999999999854432
Q ss_pred hcCCCCCCccEEEcccccccC-Ccc-cEEEeCHHHHHHH-H------------hhC---------CCCcccCCCCHHHHH
Q 040324 294 LLGVDTSDVDIMMGTFSKSFG-SYG-GYIAGSKELIQYL-K------------YNC---------PAHLYATSISPPAAE 349 (488)
Q Consensus 294 ~~~v~p~~~di~~~t~sK~~g-~~G-g~i~~~~~~~~~~-~------------~~~---------~~~~~~~~~~p~~~a 349 (488)
.++...++|+++.|++|+++ +.| |++++++++++.+ . ... ....+ .+.++..++
T Consensus 173 -~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 250 (384)
T 3zrp_A 173 -VKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYF-ATPPVHVIL 250 (384)
T ss_dssp -CCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCS-SCCCHHHHH
T ss_pred -ccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcC-CCCCHHHHH
Confidence 12222346899999999985 455 9999999988776 1 110 11111 246777777
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCC----CCCeEEEEeCCcchHHHHHHHHHHCCceE
Q 040324 350 QIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDN----DSPVMPIMVYNPAKVSSFSRECLKQNVAI 425 (488)
Q Consensus 350 a~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 425 (488)
++.++++.+... ..+++.++++++.+++.+.|++.|+++..+. .+.++++.+.. ....++.+.|.++||.+
T Consensus 251 a~~~al~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v 325 (384)
T 3zrp_A 251 QLAEAFRLIEKE----GIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-ADPQKVLAGTVNEGVEF 325 (384)
T ss_dssp HHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-SCHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-CCHHHHHHHHHHCCEEE
Confidence 777888876321 3578889999999999999999988876654 34566666654 56778999999999999
Q ss_pred EeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 040324 426 VTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGIKY 471 (488)
Q Consensus 426 ~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~~~ 471 (488)
.+..+. +. +++||+++..+|++|+++++++|++++++++.+.
T Consensus 326 ~~g~~~--~~--~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~~ 367 (384)
T 3zrp_A 326 APGVHP--AF--KYFRIGHMGWVTPNDAIIAISVIERTLRKLGEPI 367 (384)
T ss_dssp EECCCT--TC--CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ecCCCC--Cc--CEEEEeccccCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 863311 11 7899999888999999999999999999987654
No 93
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.97 E-value=1.7e-28 Score=244.12 Aligned_cols=319 Identities=13% Similarity=0.108 Sum_probs=234.1
Q ss_pred cceeEEeccc-cccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHh
Q 040324 99 VSRCLNLGSY-NYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNS 175 (488)
Q Consensus 99 g~~~ld~~s~-~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~ 175 (488)
|+++|||+++ ++++ .+|.+.+++.+++++. ..+ ..+...++++.++++++.+ .++++++|++++.
T Consensus 25 ~~~~idl~~~~~~~~---~~~~v~~a~~~~~~~~-~~y--------~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~ 92 (361)
T 3ftb_A 25 GRELLDYSSNINPLG---IPKSFLNNIDEGIKNL-GVY--------PDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIE 92 (361)
T ss_dssp ---CEETTCCCCTTC---SCHHHHTTHHHHHHGG-GSC--------CCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHH
T ss_pred CCCEEEecCCCCCCC---CCHHHHHHHHHHHHHh-cCC--------CCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHH
Confidence 8999999866 4333 3588999999998874 222 1123479999999999853 4555566677777
Q ss_pred hhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcC
Q 040324 176 SILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY 250 (488)
Q Consensus 176 ~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~ 250 (488)
.++..+ +.|+++.++|..+...++..|.+++.++.+ +++++++.+++ .++++ +....
T Consensus 93 ~~~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-------------~~~v~-i~~p~ 154 (361)
T 3ftb_A 93 LSISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-------------VDSVI-IGNPN 154 (361)
T ss_dssp HHHTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-------------CSEEE-EETTB
T ss_pred HHHHHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-------------CCEEE-EeCCC
Confidence 777776 889999999999999999999999998854 56677766542 34444 45558
Q ss_pred CCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---cEEE-eC
Q 040324 251 SMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIA-GS 323 (488)
Q Consensus 251 s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~-~~ 323 (488)
+++|.+.+ +++|+++|++||+++|+||+|+.+.++ .+.......+. .+.++++.|+||.+|.+| ||++ ++
T Consensus 155 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~g~~~~~~ 231 (361)
T 3ftb_A 155 NPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKN--YSCLFIIRAMTKFFAMPGIRFGYGITNN 231 (361)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTT--CSSEEEEEESSSTTSCGGGCCEEEEESC
T ss_pred CCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhccc--CCCEEEEeeChhhcCCCCcceeEEEeCC
Confidence 88898875 778888899999999999999944443 22223333332 234688899999998766 8988 89
Q ss_pred HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCe-ecCCCCCCeE
Q 040324 324 KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFE-VLGDNDSPVM 401 (488)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~ 401 (488)
+++++.+...... + +.+++.++++.++|+.. +..++..++++++.+++.+.|+++ ++. +.. +.+.++
T Consensus 232 ~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~ 300 (361)
T 3ftb_A 232 KEIAAKIKAKQNP--W--NINCFAEMAAINCLKDT------NYIEESLLWIKKERKRFIEELNKIGFIKRVFS-PHANFV 300 (361)
T ss_dssp HHHHHHHHTTSCT--T--CSCHHHHHHHHHTSSCH------HHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEC-CSSSEE
T ss_pred HHHHHHHHhhCCC--C--CCCHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHhCCCCceecC-CCCeEE
Confidence 9999998865542 3 47888888887777531 256778889999999999999998 666 554 456677
Q ss_pred EEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 402 PIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
++.+.. ....++.+.|.++||.+.+.. .+.+.+.+++||+++ +++++++++++|+++.+.
T Consensus 301 ~~~~~~-~~~~~l~~~l~~~gi~v~~g~-~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 301 LCRLEN-ISGEKLYDSLLKEDIVIRRCC-NFIGLDDSFVRFAIK---DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp EEEESS-SCHHHHHHHHHTTTEECEECT-TSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred EEEcCC-CCHHHHHHHHHHCCeEEeeCc-cCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 776654 456789999999999998733 222344689999984 899999999999887653
No 94
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=3e-29 Score=250.25 Aligned_cols=321 Identities=16% Similarity=0.127 Sum_probs=240.9
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCC--CCeEEeCCcHHHHhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGK--PAAIVFGMGYVTNSS 176 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~ 176 (488)
.+.+|||+++.. .++ .+|.+.+++.++++.. ..+. ... ..++++.+|++++. +.++++++|++++..
T Consensus 29 ~~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~-~~y~-------~~~-~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~ 97 (365)
T 3get_A 29 VKEVIKLASNEN-PFG-TPPKAIECLRQNANKA-HLYP-------DDS-MIELKSTLAQKYKVQNENIIIGAGSDQVIEF 97 (365)
T ss_dssp CSCCEECSSCCC-TTC-SCHHHHHHHHHHGGGT-TSCC-------CTT-CHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred CCceEEecCCCC-CCC-CCHHHHHHHHHHHHhh-ccCC-------CCC-hHHHHHHHHHHhCCCcceEEECCCHHHHHHH
Confidence 367899986532 133 4588999999888742 1221 111 26999999999995 356777777778888
Q ss_pred hhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC-----CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCC
Q 040324 177 ILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH-----NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYS 251 (488)
Q Consensus 177 ~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~-----~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s 251 (488)
++.++.++++.|+++.++|..+...++..|.+++.++. .|+++|++.++. +..+|++..+.+
T Consensus 98 ~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-------------~~~~v~~~~p~n 164 (365)
T 3get_A 98 AIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKD-------------EIKLIFLCLPNN 164 (365)
T ss_dssp HHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCHHHHHHHHHHTTT-------------TEEEEEEESSCT
T ss_pred HHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHHHhCC-------------CCCEEEEcCCCC
Confidence 88888999999999999999999999999999999986 245555555532 334555567788
Q ss_pred CCCCCCChHHHHHHHH--HcCcEEEEEccccccccC-CCC--CCcchhcCCCCCCccEEEcccccccCCcc---cEEEeC
Q 040324 252 MEGELCKLPEIITICK--RYKAYTYLDEAHSIGAVG-KTG--RGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGS 323 (488)
Q Consensus 252 ~~G~~~~l~~l~~l~~--~~g~~li~DE~~s~g~~g-~~g--~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~ 323 (488)
++|.+.+++++.++++ ++|+++|+||+|+.+.++ ..+ .......+ ..+.+++++|+||.+|.+| ||++++
T Consensus 165 ptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 242 (365)
T 3get_A 165 PLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIK--EFDNVLYLGTFSKLYGLGGLRIGYGIAN 242 (365)
T ss_dssp TTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHH--HCTTEEEEEESSSTTSCTTTCCEEEEEC
T ss_pred CCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhc--cCCCEEEEeecchHhcCcchheEEEEcC
Confidence 9999999888888888 779999999999844320 111 12222222 1344788999999998666 999999
Q ss_pred HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEE
Q 040324 324 KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPI 403 (488)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 403 (488)
+++++.+...... ++ .+++.++++.++|+.. ++.++.+++++++.+++.+.|++.|+.+..+ .+.++++
T Consensus 243 ~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~~~~ 311 (365)
T 3get_A 243 ANIISAFYKLRAP--FN--VSNLALKAAVAAMDDD------EFTEKTLENNFSQMELYKEFAKKHNIKIIDS-YTNFITY 311 (365)
T ss_dssp HHHHHHHHHHSCT--TC--SCHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHHHHHHHTTCEECCC-SSSEEEE
T ss_pred HHHHHHHHHhcCC--CC--cCHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC-CCeEEEE
Confidence 9999999876553 33 7888888887877632 2567888999999999999999999887644 4566777
Q ss_pred EeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 404 MVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 404 ~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
.+... ...++.+.|.++||.+.+..... .+++||+++ |++|+++++++|++++
T Consensus 312 ~~~~~-~~~~~~~~l~~~gi~v~~g~~~~----~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 312 FFDEK-NSTDLSEKLLKKGIIIRNLKSYG----LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ECSSS-CHHHHHHHHHTTTEECEECGGGT----CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred ECCCC-CHHHHHHHHHHCCEEEEECccCC----CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 66544 67789999999999999743222 579999984 8999999999999875
No 95
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=4.2e-29 Score=251.14 Aligned_cols=328 Identities=17% Similarity=0.158 Sum_probs=236.0
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC----CCeEEeCCc
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK----PAAIVFGMG 170 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~~~i~~~sG 170 (488)
|+.++||+++.+ .++ .++.+.+++.++++.....+. ......++++.+++++ |. ++++++++|
T Consensus 30 ~~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~y~-------~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~ 100 (385)
T 1b5p_A 30 GVDLVALTAGEP-DFD-TPEHVKEAARRALAQGKTKYA-------PPAGIPELREALAEKFRRENGLSVTPEETIVTVGG 100 (385)
T ss_dssp TCCCEECCCSSC-SSC-CCHHHHHHHHHHHHTTCCSCC-------CTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHH
T ss_pred CCCEEEecCCCC-CCC-CCHHHHHHHHHHHhcCCCCCC-------CCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCCh
Confidence 456789876544 333 246788888888765211221 1122367888888877 32 345666666
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
++++..++.++.++||.|+++.|+|+.+...++..|.+++.++.+ |+++|++.+.+ ..+++
T Consensus 101 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------------~~~~v 168 (385)
T 1b5p_A 101 SQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------------RTKAL 168 (385)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT------------TEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC------------CCEEE
Confidence 777888888889999999999999999999999999999988863 56777666542 24444
Q ss_pred EEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---
Q 040324 244 VVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG--- 317 (488)
Q Consensus 244 vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G--- 317 (488)
++ ....+++|.+.+ +++|+++|++||++||+||+|+.+.+ .| .......+++ +.+++++||||.+|.+|
T Consensus 169 ~~-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~--~~-~~~~~~~~~~-~~~i~~~s~SK~~~~~G~Ri 243 (385)
T 1b5p_A 169 VV-NSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY--EG-EHFSPGRVAP-EHTLTVNGAAKAFAMTGWRI 243 (385)
T ss_dssp EE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS--SS-CCCCGGGTCT-TTEEEEEESTTTTTCGGGCC
T ss_pred EE-eCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhccc--CC-CCCCHHHcCC-CCEEEEEechhhcCCcccce
Confidence 44 456788898766 99999999999999999999994333 33 2122233333 66899999999999777
Q ss_pred cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHH---HhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecC
Q 040324 318 GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQV---VIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG 394 (488)
Q Consensus 318 g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~---i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 394 (488)
||+++++++++.+.......+.+ .+++.+.++.++|+. . .++.++.+++++++.+++.+.|+++|+.+..
T Consensus 244 G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 316 (385)
T 1b5p_A 244 GYACGPKEVIKAMASVSRQSTTS--PDTIAQWATLEALTNQEAS-----RAFVEMAREAYRRRRDLLLEGLTALGLKAVR 316 (385)
T ss_dssp EEEECCHHHHHHHHHHHHTTTCS--CCHHHHHHHHHHHHCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred EEEEeCHHHHHHHHHHHhhccCC--CCHHHHHHHHHHHhCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHCCCeecC
Confidence 99999999988887654332333 677777777777752 1 1245678889999999999999988888776
Q ss_pred CCCCCeEEEEeCC-cchHHHHHHHHHHCCceEEee-cCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHH
Q 040324 395 DNDSPVMPIMVYN-PAKVSSFSRECLKQNVAIVTV-GFPATPLLLARARICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 395 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~-~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~ 465 (488)
+.++.++++.+.. .....++.+.|+++||.+.+. .|. . .+++||++. ++++++++++++|.++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~--~--~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 317 PSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA--A--FGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp CSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGT--C--TTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred CCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccC--C--CCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 6666666666641 235678999999999999973 221 1 478999984 899999999999877653
No 96
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2.8e-29 Score=252.61 Aligned_cols=318 Identities=13% Similarity=0.056 Sum_probs=229.6
Q ss_pred CCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCC--eEEeCCcHHHHhhhhhcccCC---------
Q 040324 116 ADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPA--AIVFGMGYVTNSSILPVLMGK--------- 184 (488)
Q Consensus 116 ~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~--~i~~~sGs~a~~~~~~~~~~~--------- 184 (488)
.+|.+.+++.+++.+....+. ...+..+...++++.++++++.+. .+++++|++++..++.++..+
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~ 118 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPG---LFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGL 118 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGG---GBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHhhcCCCcc---cChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcc
Confidence 367888888887765322221 111445667889999999998753 477888888988777776554
Q ss_pred ----CcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCC
Q 040324 185 ----GSLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE 255 (488)
Q Consensus 185 ----~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~ 255 (488)
++.|+++.++|+++...++..|.+++.++.+ |+++|++.+++. ++.+|+++++.+++|.
T Consensus 119 ~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------------~~~~v~~~~~~nptG~ 186 (397)
T 3f9t_A 119 SKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDY------------DVDGIIGIAGTTELGT 186 (397)
T ss_dssp CCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHS------------CCCEEEEEBSCTTTCC
T ss_pred cCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhc------------CCeEEEEECCCCCCCC
Confidence 9999999999999999999999999999876 899999998762 2335555667789999
Q ss_pred CCChHHHHHHHHHcCcEEEEEccccccccCCCCCCc-----chhcCCCCCCccEEEcccccccCCcc--cEEEeC-HHHH
Q 040324 256 LCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGV-----CELLGVDTSDVDIMMGTFSKSFGSYG--GYIAGS-KELI 327 (488)
Q Consensus 256 ~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~-----~~~~~v~p~~~di~~~t~sK~~g~~G--g~i~~~-~~~~ 327 (488)
+.++++|+++|++||++||+||+|+.+.++.++.+. ...+++.. ++|+++.|++|.+++++ |+++.+ +.+.
T Consensus 187 ~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~ 265 (397)
T 3f9t_A 187 IDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYK 265 (397)
T ss_dssp BCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGG
T ss_pred CCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHH
Confidence 999999999999999999999999966665555310 00122222 56899999999985432 666654 4455
Q ss_pred HHHHhhCCCCcc-------cCC--CCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCC
Q 040324 328 QYLKYNCPAHLY-------ATS--ISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDS 398 (488)
Q Consensus 328 ~~~~~~~~~~~~-------~~~--~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 398 (488)
+.+......... ++. .++..+.++++.+... ..++..++++++.+++.+.|++.|+++..++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 338 (397)
T 3f9t_A 266 RYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGRE-------GQRKIVNECMENTLYLYKKLKENNFKPVIEPIL 338 (397)
T ss_dssp GGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSS
T ss_pred HhhccCCccccCCCccccccccccchHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCc
Confidence 444221111000 111 1333344444443322 457788899999999999999998887666667
Q ss_pred CeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHH
Q 040324 399 PVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~ 465 (488)
+++++.+.. ..++.+.|.++||.+.+... .+++||+++..+|++|+++++++|+++++
T Consensus 339 ~~~~~~~~~---~~~~~~~l~~~gi~v~~~~~------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 339 NIVAIEDED---YKEVCKKLRDRGIYVSVCNC------VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp SEEEEECTT---HHHHHHHHHHTTCBCEECSS------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred cEEEEEeCC---HHHHHHHHHhCCeEEeccCC------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 777665543 56899999999999986332 37899999988999999999999998764
No 97
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=1.9e-28 Score=248.53 Aligned_cols=329 Identities=15% Similarity=0.177 Sum_probs=246.8
Q ss_pred CCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCC--eE-EeCCcHHHHhhhhhcccCCCcEEE
Q 040324 113 FAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPA--AI-VFGMGYVTNSSILPVLMGKGSLII 189 (488)
Q Consensus 113 ~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~--~i-~~~sGs~a~~~~~~~~~~~~~~Vl 189 (488)
+++.+..+.+++.+++.+...+.. .....+...++++.++++++.+. .+ +.++|++++..++.++.++||.|+
T Consensus 15 ~~p~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl 90 (416)
T 3isl_A 15 MTPGPVEVDPRVLRVMSTPVVGQF----DPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVL 90 (416)
T ss_dssp CSSSSCCCCHHHHHHTTSCCCCTT----SHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEE
T ss_pred ecCCCcCcCHHHHHHhcccCCCCc----cHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEE
Confidence 344456778888888877432221 11234567899999999999753 33 556777888888888899999999
Q ss_pred EeCCCchH--HHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHH
Q 040324 190 SDSLNHNS--IVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEI 262 (488)
Q Consensus 190 ~~~~~h~~--~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l 262 (488)
+..+.|.+ +...++..|.+++.++.+ |+++|++.+++. +..+|+++.+.+++|.+.++++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i 158 (416)
T 3isl_A 91 IPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKV------------KPKIVAMVHGETSTGRIHPLKAI 158 (416)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH------------CCSEEEEESEETTTTEECCCHHH
T ss_pred EecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhC------------CCcEEEEEccCCCCceecCHHHH
Confidence 99999987 556678889999998866 899999999742 33567778899999999999999
Q ss_pred HHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEccccccc-CCcc-cEEEeCHHHHHHHHhhC------
Q 040324 263 ITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSF-GSYG-GYIAGSKELIQYLKYNC------ 334 (488)
Q Consensus 263 ~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~-g~~G-g~i~~~~~~~~~~~~~~------ 334 (488)
.++|++||+++|+||+|+.|.+. .++...++|+++.|++|++ |..| |+++.++++++.+....
T Consensus 159 ~~l~~~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw 229 (416)
T 3isl_A 159 GEACRTEDALFIVDAVATIGGCE---------VKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGI 229 (416)
T ss_dssp HHHHHHTTCEEEEECTTTTTTSC---------CCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC-------
T ss_pred HHHHHHcCCEEEEECCccccCCC---------cchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccc
Confidence 99999999999999999855442 1222234689999999985 5555 99999999988876421
Q ss_pred ------------------------------CCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Q 040324 335 ------------------------------PAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSK 384 (488)
Q Consensus 335 ------------------------------~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (488)
.......+.+...++++.++++.+... ..++..++++++.+++.+.
T Consensus 230 ~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~----g~~~~~~~~~~~~~~l~~~ 305 (416)
T 3isl_A 230 ATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEE----GLETRFERHRHHEAALAAG 305 (416)
T ss_dssp -----------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHH
Confidence 000112245777777777888876321 2578899999999999999
Q ss_pred HHhCCCeecCCCC---CCeEEEEeCCcchHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeecCCCCHHH-HHHHHHH
Q 040324 385 LQKMGFEVLGDND---SPVMPIMVYNPAKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICISASHTKED-LIEALEV 459 (488)
Q Consensus 385 L~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~ed-id~~l~~ 459 (488)
|++.|+++..+.. +.++++.+.......++.+.|+++ ||.+.+.. .+...+++||+++...|++| +++++++
T Consensus 306 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~---~~~~~~~iRi~~~~~~~~~e~i~~~~~~ 382 (416)
T 3isl_A 306 IKAMGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSF---GPLAGKIWRIGTMGYSCRKENVLFVLAG 382 (416)
T ss_dssp HHHTTCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCC---STTTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred HHHcCCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCC---CCCCCCEEEEecccCCCcHHHHHHHHHH
Confidence 9999888766543 456667665455677899999988 99988522 23345799999977677777 9999999
Q ss_pred HHHHHHHhCCccCC
Q 040324 460 ISRIGDLVGIKYFP 473 (488)
Q Consensus 460 l~~~~~~~~~~~~~ 473 (488)
|++++++++.+...
T Consensus 383 l~~~~~~~~~~~~~ 396 (416)
T 3isl_A 383 LEAVLLRHNAGIEA 396 (416)
T ss_dssp HHHHHHHTTCCCCT
T ss_pred HHHHHHHcCCCccc
Confidence 99999998765433
No 98
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=2.3e-29 Score=254.01 Aligned_cols=331 Identities=13% Similarity=0.127 Sum_probs=233.2
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----C----CCCeEEeCCc
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----G----KPAAIVFGMG 170 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g----~~~~i~~~sG 170 (488)
++++|||++++. .++ .+|.+.+++.+++++.+... ...++......++++.+++++ | .+.++++++|
T Consensus 34 ~~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~~---~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~ 108 (398)
T 3ele_A 34 KENVYDFSIGNP-SIP-APQIVNDTIKELVTDYDSVA---LHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGA 108 (398)
T ss_dssp GGGCEECCSCCC-CSC-CCHHHHHHHHHHHHHSCHHH---HHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred CCCeEEeecCCC-CCC-CCHHHHHHHHHHHhcCCccc---cCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCH
Confidence 578999986533 333 46889999999988742100 011112222256666666665 3 1356666666
Q ss_pred HHHHhhhhhcccCCC-cEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 171 YVTNSSILPVLMGKG-SLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 171 s~a~~~~~~~~~~~~-~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
++++..++.++.++| +.|+++.++|+.+...++..|.+++.++.+ |+++|++.+++ +..+
T Consensus 109 ~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------------~~~~ 175 (398)
T 3ele_A 109 AASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINA-------------HTRG 175 (398)
T ss_dssp HHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCT-------------TEEE
T ss_pred HHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCc-------------CCCE
Confidence 788888889999999 999999999999999999999999999865 78888877643 2344
Q ss_pred EEEcCcCCCCCCCCC---hHHHHHHHHH------cCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccC
Q 040324 244 VVVEGIYSMEGELCK---LPEIITICKR------YKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG 314 (488)
Q Consensus 244 vi~e~v~s~~G~~~~---l~~l~~l~~~------~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g 314 (488)
|++..+.+++|.+.+ +++|+++|++ ||++||+||+|+ .+.++|.......+. .+.+++++|+||++|
T Consensus 176 v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~ 251 (398)
T 3ele_A 176 VIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYR--EIVYDGIKVPFVTKY--YDNTLVCYSYSKSLS 251 (398)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTT--TCBCTTCCCCCGGGT--CSSEEEEEESTTTSS
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEecccc--ccccCCCCcCChHhh--cCCeEEEEehhhcCC
Confidence 555677889999887 7788899999 999999999999 555555332222222 235788999999998
Q ss_pred Ccc---cEEEeCHHH------HHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Q 040324 315 SYG---GYIAGSKEL------IQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKL 385 (488)
Q Consensus 315 ~~G---g~i~~~~~~------~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L 385 (488)
.+| ||+++++++ .+.+....... ...+.+++.++++.+.++. ...+++++++.+++.+.|
T Consensus 252 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~----------~~~~~~~~~~~~~l~~~L 320 (398)
T 3ele_A 252 LPGERIGYVLVPDEVYDKAELYAAVCGAGRAL-GYVCAPSLFQKMIVKCQGA----------TGDINAYKENRDLLYEGL 320 (398)
T ss_dssp CTTTCCEEEECCTTSTTHHHHHHHHHHHHHHT-TCCCSCHHHHHHHTTCTTC----------CCCHHHHHHHHHHHHHHH
T ss_pred CccceeEEEEEcchhhhHHHHHHHHHHHhhhc-cccCCCHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHH
Confidence 666 999988763 33333221110 1122555555554443321 114677888999999999
Q ss_pred HhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHH
Q 040324 386 QKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 386 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~ 465 (488)
+++|+.+..+.++.++++.+... ...++.+.|.++||.+.+..... ..+++||+++ ++++++++++++|+++++
T Consensus 321 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~---~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 394 (398)
T 3ele_A 321 TRIGYHCFKPDGAFYMFVKALED-DSNAFCEKAKEEDVLIVAADGFG---CPGWVRISYC--VDREMIKHSMPAFEKIYK 394 (398)
T ss_dssp HHHTCCEECCSBSSEEEEECSSS-CHHHHHHHHHTTTEECEESGGGT---CTTEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred HHcCCeecCCCeeEEEEEEcCCC-CHHHHHHHHHHCCEEEeCccccC---CCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 98898887776666677776533 56789999999999999733221 1479999984 799999999999999998
Q ss_pred HhC
Q 040324 466 LVG 468 (488)
Q Consensus 466 ~~~ 468 (488)
++.
T Consensus 395 ~~~ 397 (398)
T 3ele_A 395 KYN 397 (398)
T ss_dssp HHC
T ss_pred Hhh
Confidence 763
No 99
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=6e-29 Score=249.26 Aligned_cols=335 Identities=13% Similarity=0.171 Sum_probs=240.5
Q ss_pred eeEEeccccccCCCCCCccchHHHHHHHHHc-CCCCCCcccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHhhh
Q 040324 101 RCLNLGSYNYLGFAAADEYCTPRVIDSLKKY-SHSTCSSRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNSSI 177 (488)
Q Consensus 101 ~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~-~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~ 177 (488)
.|||+++ .++.++.+.+++.+++++. +.........++..+...++++.+++++|.+ .++++++|++++..+
T Consensus 3 ~yld~~~-----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 77 (384)
T 1eg5_A 3 VYFDNNA-----TTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWI 77 (384)
T ss_dssp EECBTTT-----CCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHH
T ss_pred EEEecCc-----cCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHH
Confidence 4677653 2355789999999998762 1111111111223456689999999999975 567777788888888
Q ss_pred hhccc----CCCcEEEEeCCCchHHHHHH---HhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q 040324 178 LPVLM----GKGSLIISDSLNHNSIVNGA---RGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVV 245 (488)
Q Consensus 178 ~~~~~----~~~~~Vl~~~~~h~~~~~~~---~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi 245 (488)
+.++. ++|+.|+++.+.|+++...+ +..|.+++.++.+ |+++|++.+++ +..+|+
T Consensus 78 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------------~~~~v~ 144 (384)
T 1eg5_A 78 LKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-------------DTFLVS 144 (384)
T ss_dssp HHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-------------TEEEEE
T ss_pred HHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-------------CCeEEE
Confidence 88877 78999999999999887665 6679999888863 78888877653 344566
Q ss_pred EcCcCCCCCCCCChHHHHHHHHHcC--cEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cEEEe
Q 040324 246 VEGIYSMEGELCKLPEIITICKRYK--AYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYIAG 322 (488)
Q Consensus 246 ~e~v~s~~G~~~~l~~l~~l~~~~g--~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i~~ 322 (488)
++++++++|.+.++++|.++|++|| ++||+||+|++|... .++...+.|+++.|++|.+|.+| |++++
T Consensus 145 ~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~---------~~~~~~~~di~~~s~sK~~g~~G~G~~~~ 215 (384)
T 1eg5_A 145 IMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIP---------FSLEKLEVDYASFSAHKFHGPKGVGITYI 215 (384)
T ss_dssp EESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSC---------CCCTTTCCSEEEEEGGGGTSCTTCEEEEE
T ss_pred EECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcc---------cCchhcCCCEEEecHHHhcCCCceEEEEE
Confidence 6789999999999999999999999 999999999843321 12222245899999999998877 99999
Q ss_pred CHHH--HHHHHhhCC-CCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCC--
Q 040324 323 SKEL--IQYLKYNCP-AHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND-- 397 (488)
Q Consensus 323 ~~~~--~~~~~~~~~-~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-- 397 (488)
++++ ...+..... ......+.+++.++++.++|+.+. +..++..++++++.+++.+.|++.|+++..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 290 (384)
T 1eg5_A 216 RKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV-----EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEIS 290 (384)
T ss_dssp CTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSB
T ss_pred cCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccC
Confidence 8865 211111000 001223478888888888888752 145788899999999999999988888765432
Q ss_pred -CCeEEEEeCCcchHHHHHHHHHHCCceEEeec-CCCc-----------c----CCCCeEEEeecCCCCHHHHHHHHHHH
Q 040324 398 -SPVMPIMVYNPAKVSSFSRECLKQNVAIVTVG-FPAT-----------P----LLLARARICISASHTKEDLIEALEVI 460 (488)
Q Consensus 398 -~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~-----------~----~~~~~iRi~~~~~~t~edid~~l~~l 460 (488)
...+++.+.. ....++.+.|.++||.+.+.. |... . ...+++||+++..+|++|+++++++|
T Consensus 291 ~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 369 (384)
T 1eg5_A 291 LPNTLSVSFPN-IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKI 369 (384)
T ss_dssp CTTEEEEECTT-CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEeCC-CCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 2455555542 356789999999999998622 1100 0 01368999998889999999999999
Q ss_pred HHHHHHhC
Q 040324 461 SRIGDLVG 468 (488)
Q Consensus 461 ~~~~~~~~ 468 (488)
++++++++
T Consensus 370 ~~~~~~~~ 377 (384)
T 1eg5_A 370 EEILSFLD 377 (384)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99998764
No 100
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.97 E-value=8.5e-29 Score=251.45 Aligned_cols=336 Identities=11% Similarity=0.076 Sum_probs=241.0
Q ss_pred ceeEEecccccc--CCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhC------------C--CC
Q 040324 100 SRCLNLGSYNYL--GFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVG------------K--PA 163 (488)
Q Consensus 100 ~~~ld~~s~~~l--g~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------------~--~~ 163 (488)
+++|||+++.+. +....++.+.+++.+++++... . .++......++++.+|++++ . ++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~-~-----~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~ 106 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQEC-N-----GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDN 106 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCS-S-----SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCcc-C-----CcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcce
Confidence 567898765432 1223468899999998876311 1 11222334789999999887 2 35
Q ss_pred eEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC-------CCHHHHHHHHHHHHhcCCCCCC
Q 040324 164 AIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH-------NTPSHLEEVLREQIAEGQPRTR 236 (488)
Q Consensus 164 ~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~-------~d~~~Le~~l~~~~~~~~p~~~ 236 (488)
++++++|++++..++.+++++|+.|+++.++|+.+...++..|.+++.++. .|+++|++.+++
T Consensus 107 v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---------- 176 (416)
T 1bw0_A 107 VVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD---------- 176 (416)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT----------
T ss_pred EEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhcc----------
Confidence 666666777788888888899999999999999999999999999888774 267888777643
Q ss_pred CCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCC----CcchhcCCCCCCccEEEccc
Q 040324 237 RPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGR----GVCELLGVDTSDVDIMMGTF 309 (488)
Q Consensus 237 ~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~----~~~~~~~v~p~~~di~~~t~ 309 (488)
.+++++++. ..+++|.+.+ +++|+++|++||++||+||+|+ .+..+|. .......+++++.+++++|+
T Consensus 177 --~~~~v~i~~-p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~ 251 (416)
T 1bw0_A 177 --KTKLLIVTN-PSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYA--GMVFKGKDPNATFTSVADFETTVPRVILGGT 251 (416)
T ss_dssp --TEEEEEEES-SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTT--TCBCCSSCTTCCCCCTTSSCCSCCEEEEEES
T ss_pred --CCeEEEEeC-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccc--ccccCCCCCCCCccCHHHccCCCcEEEEecc
Confidence 245555555 5788999888 9999999999999999999999 4544444 22233334334446888999
Q ss_pred ccccCCcc---cEEEeCHH--HHHHHH----hhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Q 040324 310 SKSFGSYG---GYIAGSKE--LIQYLK----YNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNF 380 (488)
Q Consensus 310 sK~~g~~G---g~i~~~~~--~~~~~~----~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~ 380 (488)
||+++.+| ||++++++ +++.+. ... ..++ +.+++.++++.++|+.+ ..+..++.+++++++.++
T Consensus 252 sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~ 324 (416)
T 1bw0_A 252 AKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-MLVC--GPCTVVQAALGEALLNT----PQEHLDQIVAKIEESAMY 324 (416)
T ss_dssp TTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-HHHT--CSCHHHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHh-cccc--CCCcHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHH
Confidence 99998776 89987653 333332 211 1123 37888888888888742 112457788899999999
Q ss_pred HHHHHHhC-CCeecCCCCCCeEEEEeCCc-----chHHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHH
Q 040324 381 FRSKLQKM-GFEVLGDNDSPVMPIMVYNP-----AKVSSFSRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDL 453 (488)
Q Consensus 381 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edi 453 (488)
+.+.|+++ |+.+..+.++.++++.+... ....++.+.|+ ++||.+.+..... ..+++||++ .++++++
T Consensus 325 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~---~~~~iRis~--~~~~e~l 399 (416)
T 1bw0_A 325 LYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH---APGFTRLTT--TRPVEVY 399 (416)
T ss_dssp HHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT---CTTEEEEEC--CSCHHHH
T ss_pred HHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC---CCCeEEEEe--cCCHHHH
Confidence 99999987 77776666677777766421 34668888886 6799999733111 246899998 4789999
Q ss_pred HHHHHHHHHHHHHhC
Q 040324 454 IEALEVISRIGDLVG 468 (488)
Q Consensus 454 d~~l~~l~~~~~~~~ 468 (488)
++++++|.+++++.+
T Consensus 400 ~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 400 REAVERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988754
No 101
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=2e-29 Score=257.36 Aligned_cols=332 Identities=14% Similarity=0.110 Sum_probs=242.4
Q ss_pred ceeEEeccccccCCCCCCccc--hHHHHHHHHH-cCCCCCCcccCCCChhhHHHHHHHHHHHh-----CC--CC---eEE
Q 040324 100 SRCLNLGSYNYLGFAAADEYC--TPRVIDSLKK-YSHSTCSSRVDGGTLALHNELEECVARFV-----GK--PA---AIV 166 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v--~~a~~~~l~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~-----g~--~~---~i~ 166 (488)
++++||+++.+..++. +|.+ .+++.+++++ ....+ +......++++.+|+++ +. ++ +++
T Consensus 47 ~~~i~l~~g~~~~~~~-~~~~~~~~a~~~~~~~~~~~~y-------~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~ 118 (430)
T 2x5f_A 47 STTYNATIGMATNKDG-KMFASSLDAMFNDLTPDEIFPY-------APPQGIEELRDLWQQKMLRDNPELSIDNMSRPIV 118 (430)
T ss_dssp TCSEECCCSSCEETTE-ECCCHHHHTTBSSCCGGGTSSC-------CCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEE
T ss_pred CCcEEeeeeeccCCCC-chhhHHHHHHHHhcCccccccc-------CCCCCCHHHHHHHHHHHhccCcccCCCccceEEE
Confidence 4579997654422332 4666 6666665543 11111 22223478999999998 64 35 566
Q ss_pred eCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHh-cCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCC
Q 040324 167 FGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARG-SGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPW 239 (488)
Q Consensus 167 ~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~-~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~ 239 (488)
+++|++++..++.++.++||.|+++.++|+.+...++. .|.+++.++.+ |+++|++.+++. ++.
T Consensus 119 t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~---------~~~ 189 (430)
T 2x5f_A 119 TNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSY---------NKD 189 (430)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHC---------CSS
T ss_pred cCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhc---------CCC
Confidence 66667788888888899999999999999999999998 89999888752 688898888752 112
Q ss_pred ceEEEEEcCcCCCCCCCCC---hHHHHHHHHH-----cCcEEEEEccccccccCCCCCC---cc-hhcCCCCCCc---cE
Q 040324 240 KKIMVVVEGIYSMEGELCK---LPEIITICKR-----YKAYTYLDEAHSIGAVGKTGRG---VC-ELLGVDTSDV---DI 304 (488)
Q Consensus 240 ~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~-----~g~~li~DE~~s~g~~g~~g~~---~~-~~~~v~p~~~---di 304 (488)
+++++++.+ .+++|.+.+ +++|+++|++ ||+++|+||+|+ .+...|.. .. .+.+. .+. ++
T Consensus 190 ~~~v~i~~p-~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~i 264 (430)
T 2x5f_A 190 KVIMILNYP-NNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYY--GLFYEDVYTQSLFTALTNL--HSNAILPI 264 (430)
T ss_dssp EEEEEECSS-CTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTT--TCBCSSSCCSCHHHHHHTT--CCTTEEEE
T ss_pred CEEEEEcCC-CCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcc--cccCCcccchHHHHHHhhc--cCCcceEE
Confidence 444555444 888998887 8999999999 999999999999 55444432 22 32232 233 67
Q ss_pred EEcccccccCCcc---cEEEe---CHHHHHHHHhhCCC----CcccCCCCHHHHHHHHHHHH-HHhccCCCchHHHHHHH
Q 040324 305 MMGTFSKSFGSYG---GYIAG---SKELIQYLKYNCPA----HLYATSISPPAAEQIISAIQ-VVIGEDGSCRGAQKLAR 373 (488)
Q Consensus 305 ~~~t~sK~~g~~G---g~i~~---~~~~~~~~~~~~~~----~~~~~~~~p~~~aa~~a~L~-~i~~~~~~~~~~~~~~~ 373 (488)
++.|+||++|.+| ||+++ ++++++.+...... .+++ .+++.++++.++|+ ... ..++.++..++
T Consensus 265 ~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~ 339 (430)
T 2x5f_A 265 RLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISS--GPLPTQSAVKHVLKNNKQ---FDKEIEQNIQT 339 (430)
T ss_dssp EEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSS--CCHHHHHHHHHHHHSCHH---HHHHHHHHHHH
T ss_pred EEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCC--CChHHHHHHHHHHccChH---HHHHHHHHHHH
Confidence 7899999998777 99999 99998888654322 2333 78888888888887 310 00133458888
Q ss_pred HHHHHHHHHHHHH----hCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHH-CCceEEeecCCCccCCCCeEEEeecCCC
Q 040324 374 IRENSNFFRSKLQ----KMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLK-QNVAIVTVGFPATPLLLARARICISASH 448 (488)
Q Consensus 374 ~~~~~~~l~~~L~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~~~~~~~~iRi~~~~~~ 448 (488)
++++.+++.+.|+ +.|+.+..+.++.++++.+. .....++.+.|++ +||.+.+. +.+++||+++. .
T Consensus 340 ~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g-------~~~~iRis~~~-~ 410 (430)
T 2x5f_A 340 LKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DVDPEALRKHLIDKYSIGVIAL-------NATDIRIAFSC-V 410 (430)
T ss_dssp HHHHHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SSCHHHHHHHHHHHHCEECEEC-------SSSEEEEEGGG-S
T ss_pred HHHHHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CCCHHHHHHHHHHhCCEEEecC-------CCCeEEEEEec-C
Confidence 9999999999998 66887776655666787776 4456789999998 89999862 34789999975 5
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 040324 449 TKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 449 t~edid~~l~~l~~~~~~~ 467 (488)
+++++++++++|+++++++
T Consensus 411 ~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 411 EKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp CGGGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998765
No 102
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.97 E-value=9.7e-28 Score=239.77 Aligned_cols=317 Identities=16% Similarity=0.181 Sum_probs=238.5
Q ss_pred EEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHH------hCC-CCeEEeCCc-HHHH
Q 040324 103 LNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARF------VGK-PAAIVFGMG-YVTN 174 (488)
Q Consensus 103 ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~------~g~-~~~i~~~sG-s~a~ 174 (488)
|||+++.+ .++ .+|.+.+++.+++++.+... ..++... ..++++.++++ ++. ++.+++++| ++++
T Consensus 33 idl~~~~~-~~~-~~~~v~~a~~~~~~~~~~~~----~~y~~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al 105 (369)
T 3cq5_A 33 IRLNTNEN-PYP-PSEALVADLVATVDKIATEL----NRYPERD-AVELRDELAAYITKQTGVAVTRDNLWAANGSNEIL 105 (369)
T ss_dssp EECSSCCC-CSC-CCHHHHHHHHHHHHHHGGGT----TSCCCTT-CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred eeccCCCC-CCC-CCHHHHHHHHHHHHhccccc----ccCCCcc-HHHHHHHHHHhhhhcccCCCChHhEEECCChHHHH
Confidence 89987654 444 46899999999998742111 1112222 26889999988 443 345555555 4556
Q ss_pred hhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCc
Q 040324 175 SSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGI 249 (488)
Q Consensus 175 ~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v 249 (488)
..+++++.++|+.|+++.+.|+++...++..|.+++.++.+ |+++|++.+++. ..+ +|+++++
T Consensus 106 ~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-----------~~~-~v~~~~~ 173 (369)
T 3cq5_A 106 QQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAK-----------QPD-IVFVTTP 173 (369)
T ss_dssp HHHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHH-----------CCS-EEEEESS
T ss_pred HHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhcc-----------CCC-EEEEeCC
Confidence 78888888999999999999999999999999999988854 688898888752 133 4556889
Q ss_pred CCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCC-ccEEEcccccccCCcc---cEEEeCHH
Q 040324 250 YSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSD-VDIMMGTFSKSFGSYG---GYIAGSKE 325 (488)
Q Consensus 250 ~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~-~di~~~t~sK~~g~~G---g~i~~~~~ 325 (488)
++++|.+.+++++.++|+.+++++|+||+|+. ++.. .......+ ..+ .++++.|+||++|.+| ||++++++
T Consensus 174 ~nptG~~~~~~~l~~l~~~~~~~li~De~~~~--~~~~-~~~~~~~~--~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~ 248 (369)
T 3cq5_A 174 NNPTGDVTSLDDVERIINVAPGIVIVDEAYAE--FSPS-PSATTLLE--KYPTKLVVSRTMSKAFDFAGGRLGYFVANPA 248 (369)
T ss_dssp CTTTCCCCCHHHHHHHHHHCSSEEEEECTTGG--GCCS-CCGGGGTT--TCTTTEEEEEESSSTTSCGGGCCEEEEECTH
T ss_pred CCCCCCCCCHHHHHHHHHhCCCEEEEECCchh--hcCC-cchHHHHh--hCCCCEEEEEechHhcCCcccceEEEEeCHH
Confidence 99999999999999999999999999999994 4432 11222222 123 5788999999998777 99999999
Q ss_pred HHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEe
Q 040324 326 LIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMV 405 (488)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 405 (488)
+++.+...... ++ .+++.++++.++|+.. +..++.+++++++.+++.+.|++.|+.+.. ..+.++++.+
T Consensus 249 ~~~~l~~~~~~--~~--~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~ 317 (369)
T 3cq5_A 249 FIDAVMLVRLP--YH--LSALSQAAAIVALRHS------ADTLGTVEKLSVERVRVAARLEELGYAVVP-SESNFVFFGD 317 (369)
T ss_dssp HHHHHHTTSCT--TC--SCHHHHHHHHHHHHTH------HHHHTHHHHHHHHHHHHHHHHHHHTCEEEC-CSSSEEEEEC
T ss_pred HHHHHHHcCCC--CC--CCHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHhCCCEECC-CCCeEEEEEC
Confidence 99988765442 33 7888888888888742 145678888999999999999988888764 4567777766
Q ss_pred CCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHH
Q 040324 406 YNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 406 ~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~ 465 (488)
. ....++.+.|.++||.+.+.+ ..+++||+++ |++|+++++++|+++++
T Consensus 318 ~--~~~~~l~~~l~~~gi~v~~~~------~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 318 F--SDQHAAWQAFLDRGVLIRDVG------IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp C--SSHHHHHHHHHHTTEECBCCS------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred C--CCHHHHHHHHHHCCEEEEECC------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 4 356789999999999998531 2478999985 89999999999998764
No 103
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-29 Score=257.63 Aligned_cols=332 Identities=14% Similarity=0.137 Sum_probs=240.6
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcC-CCCCCcccCCCChhhHHHHHHHHHHHh----CC----CCeEEeCC
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYS-HSTCSSRVDGGTLALHNELEECVARFV----GK----PAAIVFGM 169 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~-~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~~~i~~~s 169 (488)
++++|||+++.+ .++ .++.+.+++.+++++.+ ..+ +......++++.+++++ |. ++++++++
T Consensus 56 ~~~~i~l~~g~~-~~~-~~~~v~~a~~~~~~~~~~~~Y-------~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G 126 (447)
T 3b46_A 56 GRELINLGQGFF-SYS-PPQFAIKEAQKALDIPMVNQY-------SPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTG 126 (447)
T ss_dssp TSCCEECCCCSC-SSC-CCHHHHHHHHHHTTSGGGGSC-------CCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESH
T ss_pred CCCeEEccCCCC-CCC-CCHHHHHHHHHHHhCcCCCCC-------CCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCC
Confidence 678999975432 333 46888999988887522 122 12222368888888876 32 24566666
Q ss_pred cHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC-----------------CCHHHHHHHHHHHHhcCC
Q 040324 170 GYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH-----------------NTPSHLEEVLREQIAEGQ 232 (488)
Q Consensus 170 Gs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~-----------------~d~~~Le~~l~~~~~~~~ 232 (488)
|++++..++.+++++||.|++..++|+.+...++..|.+++.++. .|+++|++.+.+
T Consensus 127 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------ 200 (447)
T 3b46_A 127 ANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS------ 200 (447)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT------
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc------
Confidence 678888888888999999999999999999999999999887763 267777766542
Q ss_pred CCCCCCCceEEEEEcCcCCCCCCCC---ChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCC--CCCccEEEc
Q 040324 233 PRTRRPWKKIMVVVEGIYSMEGELC---KLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD--TSDVDIMMG 307 (488)
Q Consensus 233 p~~~~~~~~~~vi~e~v~s~~G~~~---~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~--p~~~di~~~ 307 (488)
+..+|+++.+.+++|.+. ++++|+++|++||++||+||+|+ .+..+|.. .....++ ..+.|+++.
T Consensus 201 -------~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~--~~~~~g~~-~~~~~~~~~~~~~~i~i~ 270 (447)
T 3b46_A 201 -------KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYE--HLYFTDSF-TRIATLSPEIGQLTLTVG 270 (447)
T ss_dssp -------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT--TCBCSSCC-CCGGGSCHHHHTTEEEEE
T ss_pred -------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccch--hcccCCCC-cCHHHcCCCCCCcEEEEe
Confidence 234455567788899875 49999999999999999999999 44444421 1111121 124589999
Q ss_pred ccccccCCcc---cEEEe-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH
Q 040324 308 TFSKSFGSYG---GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRS 383 (488)
Q Consensus 308 t~sK~~g~~G---g~i~~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (488)
|+||++|.+| ||+++ ++++++.+.......+++ .+++.++++.++|+... ..+..++++++++++.+++.+
T Consensus 271 S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~a~~~aL~~~~---~~~~~~~~~~~~~~~~~~l~~ 345 (447)
T 3b46_A 271 SAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFA--SPSPLQEACANSINDAL---KIGYFEKMRQEYINKFKIFTS 345 (447)
T ss_dssp EHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSS--CCHHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCC--CChHHHHHHHHHHhCCc---chHHHHHHHHHHHHHHHHHHH
Confidence 9999998767 99999 999998887643323344 77888888888887641 012467788899999999999
Q ss_pred HHHhCCCeecCCCCCCeEEEEeCCc---------------chHHHHHHHHHH-CCceEEee-cCCCc---cCCCCeEEEe
Q 040324 384 KLQKMGFEVLGDNDSPVMPIMVYNP---------------AKVSSFSRECLK-QNVAIVTV-GFPAT---PLLLARARIC 443 (488)
Q Consensus 384 ~L~~~g~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~-~Gi~v~~~-~~~~~---~~~~~~iRi~ 443 (488)
.|+++|+.+..+.++.++++.+... ....+++++|++ +||.+.+. .|... +.+.+++||+
T Consensus 346 ~L~~~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls 425 (447)
T 3b46_A 346 IFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFA 425 (447)
T ss_dssp HHHHHTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEE
T ss_pred HHHHCCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEE
Confidence 9999898887776677777777531 345689988875 79999873 22211 1135799999
Q ss_pred ecCCCCHHHHHHHHHHHHH
Q 040324 444 ISASHTKEDLIEALEVISR 462 (488)
Q Consensus 444 ~~~~~t~edid~~l~~l~~ 462 (488)
++ .++++|++++++|++
T Consensus 426 ~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 426 VC--KDDAYLENAVERLKL 442 (447)
T ss_dssp CC--SCHHHHHHHHHHGGG
T ss_pred Ee--CCHHHHHHHHHHHHH
Confidence 95 589999999999876
No 104
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.97 E-value=3.7e-28 Score=244.30 Aligned_cols=296 Identities=17% Similarity=0.189 Sum_probs=226.8
Q ss_pred hhhHHHHHHHHHHHhCCC---CeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchH--HHHHHHhcCCeEEEeeCC----
Q 040324 145 LALHNELEECVARFVGKP---AAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNS--IVNGARGSGATIRVFQHN---- 215 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~--~~~~~~~~g~~v~~~~~~---- 215 (488)
.+...++++.++++++.+ .++++++|++++..+++++.++|+.|++..+.|.+ +...+...|.+++.++.+
T Consensus 55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 134 (393)
T 3kgw_A 55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEH 134 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCC
Confidence 456689999999999875 25666788889988888889999999998777753 355677789998888743
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchh
Q 040324 216 -TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCEL 294 (488)
Q Consensus 216 -d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~ 294 (488)
|+++|++.+++. +..+|+++++.+++|.+.++++|+++|++||++||+||+|+.|...
T Consensus 135 ~d~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~--------- 193 (393)
T 3kgw_A 135 YTLQEVEEGLAQH------------KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVP--------- 193 (393)
T ss_dssp CCHHHHHHHHHHH------------CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSC---------
T ss_pred CCHHHHHHHHhhC------------CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcc---------
Confidence 899999998762 2345667778999999999999999999999999999999854332
Q ss_pred cCCCCCCccEEEcccccccC-Ccc-cEEEeCHHHHHHHHhhCCCC---------------------cccCCCCHHHHHHH
Q 040324 295 LGVDTSDVDIMMGTFSKSFG-SYG-GYIAGSKELIQYLKYNCPAH---------------------LYATSISPPAAEQI 351 (488)
Q Consensus 295 ~~v~p~~~di~~~t~sK~~g-~~G-g~i~~~~~~~~~~~~~~~~~---------------------~~~~~~~p~~~aa~ 351 (488)
++++..++|+++.|++|+++ +.| |++++++++++.+....... ....+.++..++++
T Consensus 194 ~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 273 (393)
T 3kgw_A 194 IYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCL 273 (393)
T ss_dssp CCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHH
T ss_pred cchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHH
Confidence 22333446899999999884 455 99999999999887532211 11234677777888
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCC----CCeEEEEeCCcchHHHHHHHHHHC-CceEE
Q 040324 352 ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND----SPVMPIMVYNPAKVSSFSRECLKQ-NVAIV 426 (488)
Q Consensus 352 ~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~ 426 (488)
.++++.+..+ ..+++.++++++.+++.+.|+++|+.+..+.. ..++++.+.......++.+.|+++ ||.+.
T Consensus 274 ~~al~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 349 (393)
T 3kgw_A 274 RESLALIAEQ----GLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEIS 349 (393)
T ss_dssp HHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECB
T ss_pred HHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEe
Confidence 8888876321 35788999999999999999999887763322 344556665555677899999998 99998
Q ss_pred eecCCCccCCCCeEEEee-cCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 427 TVGFPATPLLLARARICI-SASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 427 ~~~~~~~~~~~~~iRi~~-~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
+.. .+...+++||++ +...|++|+++++++|+++++++.
T Consensus 350 ~g~---~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 350 GGL---GPTEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp CCC---GGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred CCc---ccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 622 223457999998 666799999999999999998874
No 105
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=1.5e-28 Score=247.48 Aligned_cols=292 Identities=15% Similarity=0.188 Sum_probs=225.0
Q ss_pred hhhHHHHHHHHHHHhCCC-C--eEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchH--HHHHHHhcCCeEEEeeC-----
Q 040324 145 LALHNELEECVARFVGKP-A--AIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNS--IVNGARGSGATIRVFQH----- 214 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~-~--~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~--~~~~~~~~g~~v~~~~~----- 214 (488)
.+..+++++.+++++|.+ + ++++++|++++..++.++..+++.|+++.+.|++ +...++..|.+++.++.
T Consensus 66 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 145 (393)
T 1vjo_A 66 LALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEV 145 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCC
Confidence 356689999999999975 3 5566677788888888888999999999999998 77778888999998884
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchh
Q 040324 215 NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCEL 294 (488)
Q Consensus 215 ~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~ 294 (488)
.|+++|++.+++. +..+|+++++.+++|.+.++++|+++|++||++||+||+|++|...
T Consensus 146 ~d~~~l~~~l~~~------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~--------- 204 (393)
T 1vjo_A 146 FSLEELRTALETH------------RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVP--------- 204 (393)
T ss_dssp CCHHHHHHHHHHH------------CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSC---------
T ss_pred CCHHHHHHHHhhC------------CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcC---------
Confidence 4899999988752 2235667889999999999999999999999999999999944321
Q ss_pred cCCCCCCccEEEcccccccCCcc--cEEEeCHHHHHHHHhhC---CCC--------------cccC-CCCHHHHHHHHHH
Q 040324 295 LGVDTSDVDIMMGTFSKSFGSYG--GYIAGSKELIQYLKYNC---PAH--------------LYAT-SISPPAAEQIISA 354 (488)
Q Consensus 295 ~~v~p~~~di~~~t~sK~~g~~G--g~i~~~~~~~~~~~~~~---~~~--------------~~~~-~~~p~~~aa~~a~ 354 (488)
..+...++|+++.|++|++++++ |++++++++++.+.... .++ .+.. +.+++.++++.++
T Consensus 205 ~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~a 284 (393)
T 1vjo_A 205 IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREA 284 (393)
T ss_dssp CCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHH
T ss_pred CcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHH
Confidence 12222356899999999997655 99999999988875421 111 1122 5788888888889
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCC---CCeEEEEeCCcchHHHHHHHHHHC-CceEEeecC
Q 040324 355 IQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND---SPVMPIMVYNPAKVSSFSRECLKQ-NVAIVTVGF 430 (488)
Q Consensus 355 L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~ 430 (488)
|+.+.. ...++.+++++++.+++.+.|+++|+++..+.+ ..++++.+.......++.+.|.++ ||.+.+...
T Consensus 285 l~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 360 (393)
T 1vjo_A 285 LRLIAQ----EGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLG 360 (393)
T ss_dssp HHHHHH----HCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCG
T ss_pred HHHHHH----ccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCcc
Confidence 887631 135678899999999999999998888766543 245666664444677899999998 999987332
Q ss_pred CCccCCCCeEEEee-cCCCCHHHHHHHHHHHHHHH
Q 040324 431 PATPLLLARARICI-SASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 431 ~~~~~~~~~iRi~~-~~~~t~edid~~l~~l~~~~ 464 (488)
+ ...+++||++ +...+++++++++++|++++
T Consensus 361 ~---~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 361 E---LAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp G---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred c---cCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 1 2357899995 45667889999999999875
No 106
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.97 E-value=6.7e-29 Score=247.14 Aligned_cols=294 Identities=14% Similarity=0.190 Sum_probs=219.8
Q ss_pred hhHHHHHHHHHHHhCCC----CeEEeCCcHHHHhhhhhcccCCCcEEE-EeCCCchH-HHHHHHhcCCeEEEeeC-----
Q 040324 146 ALHNELEECVARFVGKP----AAIVFGMGYVTNSSILPVLMGKGSLII-SDSLNHNS-IVNGARGSGATIRVFQH----- 214 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~----~~i~~~sGs~a~~~~~~~~~~~~~~Vl-~~~~~h~~-~~~~~~~~g~~v~~~~~----- 214 (488)
+...++++.++++++.+ .++++++|++++..++.++..+++.|+ .+.++|++ +...+...|.+++.++.
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 116 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR 116 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSC
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCC
Confidence 55689999999999953 377778888899888888888888765 45688876 44556677888888874
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchh
Q 040324 215 NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCEL 294 (488)
Q Consensus 215 ~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~ 294 (488)
.|+++|++.+++. + +..+|++....+++|.+.++++|+++|++||++||+||+|+.+...
T Consensus 117 ~d~~~l~~~l~~~----------~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~--------- 176 (366)
T 1m32_A 117 PDVQAIDAILNAD----------P-TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP--------- 176 (366)
T ss_dssp CCHHHHHHHHHHC----------T-TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC---------
T ss_pred CCHHHHHHHHhcC----------C-CeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcC---------
Confidence 4899999988752 0 1234545666678899999999999999999999999999854332
Q ss_pred cCCCCCCccEEEccccccc-CCcc-cEEEeCHHHHHHHHhhCCCCcc----------------cCCCCHHHHHHHHHHHH
Q 040324 295 LGVDTSDVDIMMGTFSKSF-GSYG-GYIAGSKELIQYLKYNCPAHLY----------------ATSISPPAAEQIISAIQ 356 (488)
Q Consensus 295 ~~v~p~~~di~~~t~sK~~-g~~G-g~i~~~~~~~~~~~~~~~~~~~----------------~~~~~p~~~aa~~a~L~ 356 (488)
+++...+.|+++.|++|++ |+.| |++++++++++.+......+.+ ..+.++..++++.++++
T Consensus 177 ~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 256 (366)
T 1m32_A 177 MDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALK 256 (366)
T ss_dssp CCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH
T ss_pred ccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH
Confidence 1222234589999999988 5556 9999999888766432211110 13478888888888888
Q ss_pred HHhccCCCch-HHHHHHHHHHHHHHHHHHHHhCCCeecCCC---CCCeEEEEeCC--cchHHHHHHHHHHCCceEEeecC
Q 040324 357 VVIGEDGSCR-GAQKLARIRENSNFFRSKLQKMGFEVLGDN---DSPVMPIMVYN--PAKVSSFSRECLKQNVAIVTVGF 430 (488)
Q Consensus 357 ~i~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~l~~~Gi~v~~~~~ 430 (488)
.+... . .++++++++++.+++.+.|+++|+.+..+. .+.++++.+.. .....++.+.|.++||.+.+...
T Consensus 257 ~~~~~----g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~ 332 (366)
T 1m32_A 257 ELAKE----GGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKV 332 (366)
T ss_dssp HHHHH----THHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCC
T ss_pred HHHHc----cCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcC
Confidence 76321 1 467888999999999999999888776542 23467777654 34677899999999999986321
Q ss_pred CCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 431 PATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 431 ~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
.+.+++|++++..+|++|+++++++|+++++++
T Consensus 333 ----~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 333 ----SQSDCFRIGNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp ----SSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred ----CCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 135789999998899999999999999886543
No 107
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=7e-29 Score=249.44 Aligned_cols=319 Identities=17% Similarity=0.189 Sum_probs=234.9
Q ss_pred CCCCCccchHHHHHHHHHcCCCCCCcccCCC-ChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHhhhhhcc-cCCCcEE
Q 040324 113 FAAADEYCTPRVIDSLKKYSHSTCSSRVDGG-TLALHNELEECVARFVGKP--AAIVFGMGYVTNSSILPVL-MGKGSLI 188 (488)
Q Consensus 113 ~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g-~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~~~~~-~~~~~~V 188 (488)
.++.++.+.+++.+++++.......+...+. ..+...++++.+++++|.+ +++++++|++++..++.++ .++++.|
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~v 104 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEI 104 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEE
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEE
Confidence 3445678999999998774311110000111 1356789999999999975 5777788888988888888 7899999
Q ss_pred EEeCCCchHHHHH----HHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCC
Q 040324 189 ISDSLNHNSIVNG----ARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELC 257 (488)
Q Consensus 189 l~~~~~h~~~~~~----~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~ 257 (488)
+++.+.|+++... ++..|.+++.++.+ |+++|++.+.+ +..+|+++++.+++|.+.
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-------------~~~~v~~~~~~nptG~~~ 171 (390)
T 1elu_A 105 LLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-------------KTRLVILSHLLWNTGQVL 171 (390)
T ss_dssp EEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-------------TEEEEEEESBCTTTCCBC
T ss_pred EEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-------------CceEEEEeccccCCceec
Confidence 9999999997654 45668999888863 56666665532 345677889999999999
Q ss_pred ChHHHHHHHH----HcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEccccc-ccCCcc-cEEEeCHHHHHHHH
Q 040324 258 KLPEIITICK----RYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSK-SFGSYG-GYIAGSKELIQYLK 331 (488)
Q Consensus 258 ~l~~l~~l~~----~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK-~~g~~G-g~i~~~~~~~~~~~ 331 (488)
++++|+++|+ +||+++|+||+|+.|... .++...++|+++.|++| .+|+.| |++++++++++.+.
T Consensus 172 ~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~ 242 (390)
T 1elu_A 172 PLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---------LDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEIN 242 (390)
T ss_dssp CHHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---------CCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCC
T ss_pred CHHHHHHHHhhhhhhcCcEEEEEcccccCCcC---------CChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcC
Confidence 9999999999 999999999999854321 12222345899999999 556666 99999988877664
Q ss_pred hhCCCC-------------------cc-cCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CC
Q 040324 332 YNCPAH-------------------LY-ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GF 390 (488)
Q Consensus 332 ~~~~~~-------------------~~-~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 390 (488)
....++ .+ ..+.++..++++.++++.+.+. ...++..++++++.+++.+.|+++ |+
T Consensus 243 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~---~~~~~~~~~~~~~~~~l~~~L~~~~g~ 319 (390)
T 1elu_A 243 PTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQ---GTAEERYQAICQRSEFLWRGLNQLPHV 319 (390)
T ss_dssp CCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred CccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 321110 11 1235677777777888876421 136778899999999999999998 88
Q ss_pred eecCC--CCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHH
Q 040324 391 EVLGD--NDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISR 462 (488)
Q Consensus 391 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~ 462 (488)
++..+ ..+.++.+.+.......++.+.|.++||.+.+.. +.+++||+++..+|++|+++++++|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~------~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 320 HCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA------DPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp EESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET------TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred EEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecC------CCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 87653 3456777766544456789999999999998633 247899999889999999999999865
No 108
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.97 E-value=2.4e-28 Score=243.66 Aligned_cols=326 Identities=16% Similarity=0.111 Sum_probs=232.8
Q ss_pred CcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHh
Q 040324 98 NVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNS 175 (488)
Q Consensus 98 ~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~ 175 (488)
+|+++|||+++. ..++ .+|.+.+++.+++++. ..+ +. ....++++.+|++++.+ .++++++|++++.
T Consensus 22 ~~~~~idl~~~~-~~~~-~~~~v~~a~~~~~~~~-~~y-------~~-~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~ 90 (364)
T 1lc5_A 22 SPDQLLDFSANI-NPLG-MPVSVKRALIDNLDCI-ERY-------PD-ADYFHLHQALARHHQVPASWILAGNGETESIF 90 (364)
T ss_dssp CGGGSEECSSCC-CTTC-CCHHHHHHHHHTGGGG-GSC-------CC-TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHH
T ss_pred CccceEEecccc-CCCC-CCHHHHHHHHHHHHHh-hcC-------CC-CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHH
Confidence 378899997654 2344 4688888888887652 112 11 22479999999999874 4555555666777
Q ss_pred hhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCCC---HHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCC
Q 040324 176 SILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNT---PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSM 252 (488)
Q Consensus 176 ~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d---~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~ 252 (488)
.++..+ +++.|+++.++|+.+...++..|.+++.++.+. .+.+++.++. +. +..++++++. ..++
T Consensus 91 ~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~-~~--------~~~~~v~i~~-p~np 158 (364)
T 1lc5_A 91 TVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEA-LT--------PDLDCLFLCT-PNNP 158 (364)
T ss_dssp HHHHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHH-CC--------TTCCEEEEES-SCTT
T ss_pred HHHHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHh-cc--------CCCCEEEEeC-CCCC
Confidence 777777 669999999999999999999999999988752 1112333332 11 1244555444 4788
Q ss_pred CCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---cEEE-eCHH
Q 040324 253 EGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIA-GSKE 325 (488)
Q Consensus 253 ~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~-~~~~ 325 (488)
+|.+.+ +++|+++|++||+++|+||+|+ .++.++....+..+ ..+.|+++.|+||++|.+| ||++ ++++
T Consensus 159 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~ 234 (364)
T 1lc5_A 159 TGLLPERPLLQAIADRCKSLNINLILDEAFI--DFIPHETGFIPALK--DNPHIWVLRSLTKFYAIPGLRLGYLVNSDDA 234 (364)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTG--GGSTTCCCSGGGCT--TCTTEEEEEESTTTTTCTTTCCEEEECCCHH
T ss_pred CCCCCCHHHHHHHHHHhhhcCcEEEEECcCh--hhccCccchhhHhc--cCCCEEEEEECchhhcCCccceEEEEECCHH
Confidence 898887 9999999999999999999999 44443433333333 2345888999999998666 9999 9999
Q ss_pred HHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCeEEEE
Q 040324 326 LIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVMPIM 404 (488)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 404 (488)
+++.+..... .+ +.+++.++++.++|+.- +..++.+++++++.+++.+.|+++ |+.+.. ..+.++++.
T Consensus 235 ~~~~l~~~~~--~~--~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~ 303 (364)
T 1lc5_A 235 AMARMRRQQM--PW--SVNALAALAGEVALQDS------AWQQATWHWLREEGARFYQALCQLPLLTVYP-GRANYLLLR 303 (364)
T ss_dssp HHHHHHHHSC--TT--CSCHHHHHHHHHGGGCH------HHHHHHHHHHHHHHHHHHHHHHTSTTEEECC-CSSSEEEEE
T ss_pred HHHHHHHhCC--CC--CCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHhcCCCCEECC-CCCeEEEEE
Confidence 9998887654 23 37888888777776531 246778888899999999999987 777654 456777776
Q ss_pred eCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 405 VYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 405 ~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+.. ...++.+.|+++||.+.+... +.+.+.+++||++ .+++|+++++++|+++++++
T Consensus 304 ~~~--~~~~l~~~l~~~gi~v~~g~~-~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 304 CER--EDIDLQRRLLTQRILIRSCAN-YPGLDSRYYRVAI---RSAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp ESC--TTCCHHHHHHTTTEECEECTT-STTCCTTEEEEEC---CCHHHHHHHHHHHHHHC---
T ss_pred CCC--cHHHHHHHHHHCCcEEeeCcc-cCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhhcc
Confidence 653 234688889999999997331 1123457999997 37999999999999887654
No 109
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.97 E-value=4.9e-29 Score=252.05 Aligned_cols=339 Identities=17% Similarity=0.198 Sum_probs=240.6
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHH-HcCCCCCCcccCCCChhhHHH----HHHHHHHHhCCCCe-EEeCCcHH
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLK-KYSHSTCSSRVDGGTLALHNE----LEECVARFVGKPAA-IVFGMGYV 172 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~-~~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~~-i~~~sGs~ 172 (488)
++.++|+++++++ +|.+.+|+.+++. .++.++++++...|. +...+ +++.+++++|.+.. +++++|++
T Consensus 23 ~~~~~~~~~~~~~-----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~ 96 (405)
T 2vi8_A 23 HAKIELIASENFV-----SRAVMEAQGSVLTNKYAEGYPGRRYYGGC-EYVDIVEELARERAKQLFGAEHANVQPHSGAQ 96 (405)
T ss_dssp HHSEECCTTCCCC-----CHHHHHHHTSGGGGCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHHTCSEEECCCSSHHH
T ss_pred hcceeeccCcccC-----CHHHHHHHHHHhhcccccCCCCccccccc-hHHHHHHHHHHHHHHHHhCCCceEEEecCcHH
Confidence 3567888776665 6889999998885 443333333322232 22344 44699999998765 44689999
Q ss_pred HHhhhhhcccCCCcEEEEeCCCchHHHH-H--HHhcC--CeEEEeeC------CCHHHHHHHHHHHHhcCCCCCCCCCce
Q 040324 173 TNSSILPVLMGKGSLIISDSLNHNSIVN-G--ARGSG--ATIRVFQH------NTPSHLEEVLREQIAEGQPRTRRPWKK 241 (488)
Q Consensus 173 a~~~~~~~~~~~~~~Vl~~~~~h~~~~~-~--~~~~g--~~v~~~~~------~d~~~Le~~l~~~~~~~~p~~~~~~~~ 241 (488)
++..++.++.++|+.|+++.++|+++.. . +...| ..++.++. .|+++|++.+++. ..+
T Consensus 97 a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----------~~~ 165 (405)
T 2vi8_A 97 ANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLH-----------RPK 165 (405)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-----------CCS
T ss_pred HHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhc-----------CCe
Confidence 9988888888999999999999987743 1 11223 36666653 2789999988752 134
Q ss_pred EEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccC-CcccEE
Q 040324 242 IMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG-SYGGYI 320 (488)
Q Consensus 242 ~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g-~~Gg~i 320 (488)
++++.++.+ |...++++|+++|++||++||+||+|+.|..+. +. .. .++ ...|+++.|++|+++ +.||++
T Consensus 166 ~v~~~~~~~---~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~--~~-~~~--~~~di~~~s~sK~~~g~~gG~~ 236 (405)
T 2vi8_A 166 LIVAAAAAY---PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAA-GL--HP-NPV--PYAHFVTTTTHKTLRGPRGGMI 236 (405)
T ss_dssp EEEECCSSC---CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TS--SC-CST--TTCSEEEEESSSTTCCCSCEEE
T ss_pred EEEEeCCCC---CccCCHHHHHHHHHHcCCEEEEEcccccccccc-Cc--CC-Ccc--ccCCEEEEeccccCCCCCCeEE
Confidence 444434444 455589999999999999999999998544432 11 11 122 135899999999997 667999
Q ss_pred EeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCC-CCCC
Q 040324 321 AGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD-NDSP 399 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~ 399 (488)
++++++++.+......+.++ +.++..++++.++++.+.. ...++..++++++.+++.+.|+++|+++..+ ..++
T Consensus 237 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~aa~~~al~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 311 (405)
T 2vi8_A 237 LCQEQFAKQIDKAIFPGIQG-GPLMHVIAAKAVAFGEALQ----DDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNH 311 (405)
T ss_dssp EECHHHHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSS
T ss_pred EEcHHHHHHHHhhhcccccC-CCCHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCce
Confidence 99999998887654333333 2467777777788877531 2457889999999999999999999988764 3467
Q ss_pred eEEEEeCCc-chHHHHHHHHHHCCceEEeecCC---CccCCCCeEEEeecC----CCCHHHHHHHHHHHHHHHHHhC
Q 040324 400 VMPIMVYNP-AKVSSFSRECLKQNVAIVTVGFP---ATPLLLARARICISA----SHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 400 ~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~~~---~~~~~~~~iRi~~~~----~~t~edid~~l~~l~~~~~~~~ 468 (488)
++++.+... ....++.+.|.++||.+.+...| ..+...+.+|++++. .+|++|+++++++|+++++++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 312 LLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp EEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred EEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 777777532 24667888898889999874322 122234689999986 6899999999999999987653
No 110
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.97 E-value=7.2e-28 Score=245.44 Aligned_cols=319 Identities=15% Similarity=0.146 Sum_probs=225.1
Q ss_pred CChhhHHHHHHHHHHHhCCC----------CeEEeCCc-HHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEE
Q 040324 143 GTLALHNELEECVARFVGKP----------AAIVFGMG-YVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRV 211 (488)
Q Consensus 143 g~~~~~~~l~~~la~~~g~~----------~~i~~~sG-s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~ 211 (488)
|..+..+.+++.+++..|.+ +.+++++| ++++..++.+++++||.|+++.|+|+.+...++..|.+++.
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 158 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIIN 158 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEE
Confidence 56444444444444445643 35666666 55667888888999999999999999999999999999988
Q ss_pred eeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEcccccccc
Q 040324 212 FQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAV 284 (488)
Q Consensus 212 ~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~ 284 (488)
++.+ |+++|++.+++...........+..++++++...++++|.+.+ +++|+++|++||++||+||+|+ .+
T Consensus 159 v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~--~~ 236 (425)
T 2r2n_A 159 VASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYY--FL 236 (425)
T ss_dssp ECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG--GG
T ss_pred eCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcc--cc
Confidence 8753 7888988876310000000000124445555788899998886 5599999999999999999999 44
Q ss_pred CCCCCCcchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhcc
Q 040324 285 GKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGE 361 (488)
Q Consensus 285 g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~ 361 (488)
...|........+++++.+++++||||+++ +| ||+++++++++.+.......+++ .+++.++++.++|+.+..+
T Consensus 237 ~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~~~~~--~~~~~q~a~~~~l~~~~~~ 313 (425)
T 2r2n_A 237 QFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLH--PSTFNQLMISQLLHEWGEE 313 (425)
T ss_dssp BSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTTTCS--SCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcccc
Confidence 444433222333334556789999999998 67 99999999999887654433444 7888888888888753211
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhC--CC-eecCCCCCCeEEEEeCCcchHHH-HHHHHHHCCceEEeecCCCc--cC
Q 040324 362 DGSCRGAQKLARIRENSNFFRSKLQKM--GF-EVLGDNDSPVMPIMVYNPAKVSS-FSRECLKQNVAIVTVGFPAT--PL 435 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~Gi~v~~~~~~~~--~~ 435 (488)
...++.++.+++++++.+++.+.|++. |+ .+..+.++.++++.+.......+ +.+.|.++||.+.+...... ..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~ 393 (425)
T 2r2n_A 314 GFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSA 393 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSSSTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcCCCCC
Confidence 111245677888899999999999884 66 45556677888888865433445 57788889999997332111 12
Q ss_pred CCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 436 LLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 436 ~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+.+++||+++. .+++++++++++|++++++.
T Consensus 394 ~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 394 PSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp CCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 35799999863 69999999999999998764
No 111
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.94 E-value=1.9e-32 Score=276.21 Aligned_cols=344 Identities=13% Similarity=0.040 Sum_probs=248.5
Q ss_pred CCCCceEEEeeccccCCcccccccCCcc--eeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHH
Q 040324 73 SAPDAWFDVVERYSNDNNKTLKRTNNVS--RCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNE 150 (488)
Q Consensus 73 ~~~G~~~~~~dr~~~~~~~~~~~~~~g~--~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~ 150 (488)
++.|+++||.+ |+ +++||+++++ +++ .+|.+.+++.+++++....+. +...+
T Consensus 17 ~~~g~~~~d~~---------------g~~~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~y~---------~~~~~ 70 (392)
T 3b1d_A 17 LSHHTYKWKET---------------ETDPQLLPAWIADM-DFE-VMPEVKQAIHDYAEQLVYGYT---------YASDE 70 (392)
Confidence 58999999988 77 9999986654 555 368899999998865322221 11467
Q ss_pred HHHHHHHHhCC--------CCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------
Q 040324 151 LEECVARFVGK--------PAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN------- 215 (488)
Q Consensus 151 l~~~la~~~g~--------~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------- 215 (488)
+++.+++++.. +.++++++|++++..+++++..+++.|+++.+.|+.+...++..|.+++.++.+
T Consensus 71 l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~ 150 (392)
T 3b1d_A 71 LLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQ 150 (392)
Confidence 77888776531 345666666778888888888999999999999999998888888888877752
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCc
Q 040324 216 -TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGV 291 (488)
Q Consensus 216 -d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~ 291 (488)
|+++|++.+++. ..+ +|++...++++|.+.+ +++|+++|++||++||+||+|+ .+.++|...
T Consensus 151 ~d~~~l~~~l~~~-----------~~~-~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~g~~~ 216 (392)
T 3b1d_A 151 IDFEQLENDIVEN-----------DVK-LYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQ--DLTLFGHEH 216 (392)
Confidence 567777776531 133 4445677888888765 9999999999999999999999 665555443
Q ss_pred chhcCCCC--CCccEEEcccccccCCcc---cEEEeCH-HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCc
Q 040324 292 CELLGVDT--SDVDIMMGTFSKSFGSYG---GYIAGSK-ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSC 365 (488)
Q Consensus 292 ~~~~~v~p--~~~di~~~t~sK~~g~~G---g~i~~~~-~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~ 365 (488)
.....+.+ .+.++++.||||++|.+| ||+++++ ++++.+......++++ +.+++.++++.++|+.. .+
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~-----~~ 290 (392)
T 3b1d_A 217 VSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHH-EVSSLGYIATETAYRYG-----KP 290 (392)
Confidence 33444433 455788899999998666 9998864 5888887655543322 25777777777777632 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCCCCeEEEEeCCc-chHHHHHHHHH-HCCceEEeecCCCccCCCCeEE
Q 040324 366 RGAQKLARIRENSNFFRSKLQK-M-GFEVLGDNDSPVMPIMVYNP-AKVSSFSRECL-KQNVAIVTVGFPATPLLLARAR 441 (488)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iR 441 (488)
..++.+++++++.+++.+.|++ + ++.+..+.++.++++.+... ....++.+.|+ ++||.+.+.... .+.+.+++|
T Consensus 291 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f-~~~~~~~iR 369 (392)
T 3b1d_A 291 WLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDY-GSEGELHAR 369 (392)
Confidence 4567788888999999999987 4 77766655555555655432 34567889997 679999873321 223457899
Q ss_pred EeecCCCCHHHHHHHHHHHHHHHH
Q 040324 442 ICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 442 i~~~~~~t~edid~~l~~l~~~~~ 465 (488)
|++. .+++++++++++|+++++
T Consensus 370 i~~~--~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 370 LNIA--APKSLVEEICKRIVCCLP 391 (392)
Confidence 9874 578999999999988764
No 112
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.97 E-value=6.9e-30 Score=254.04 Aligned_cols=332 Identities=11% Similarity=0.039 Sum_probs=235.1
Q ss_pred ceeEE-eccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhh
Q 040324 100 SRCLN-LGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSIL 178 (488)
Q Consensus 100 ~~~ld-~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~ 178 (488)
++++| |.+++|+|++++ |.+.+++.++++.++.. .....++..+...+|++.++++++.+..+++++|++++..++
T Consensus 3 ~~~~~~~~~~~~l~~~~~-p~~~~~~~~~~~~~~~~--~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al 79 (357)
T 3lws_A 3 NRLRTSFQQTTGQISGHG-KRNVGVLKTAFAAVADE--MASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVAL 79 (357)
T ss_dssp CHHHHHHHTCSEESSBSS-CCBHHHHHHHHTTSCTT--CBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred chhhhHHHhhcccccCCC-CCCHHHHHHHHHHhhcc--cCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHH
Confidence 55676 688999999965 78889999888876521 223445666778999999999999988899999999998888
Q ss_pred hcccCCCc--EEEEeCCCchHHHH---HHHhcCCeEEEeeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCc
Q 040324 179 PVLMGKGS--LIISDSLNHNSIVN---GARGSGATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGI 249 (488)
Q Consensus 179 ~~~~~~~~--~Vl~~~~~h~~~~~---~~~~~g~~v~~~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v 249 (488)
.++..+++ .|+++.++|.+... .....|++++.++.+ |+++|+++. . ..+|+++++
T Consensus 80 ~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~--------------~-~~~v~~~~p 144 (357)
T 3lws_A 80 RIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDEIKALP--------------D-IACLLLELP 144 (357)
T ss_dssp HHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSCTTSCCCHHHHHTCC--------------S-CSEEEEESS
T ss_pred HHHhhcCCCcEEEecccceeeeeccchhhhccCcEEEEecCCCCCcCHHHHhcCc--------------C-cceEEEEcc
Confidence 88887777 88888888877654 345668888888743 677776541 1 335666777
Q ss_pred CCCC-CCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEccccccc-CCcccEEEeCH
Q 040324 250 YSME-GELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSF-GSYGGYIAGSK 324 (488)
Q Consensus 250 ~s~~-G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~-g~~Gg~i~~~~ 324 (488)
++++ |.+.+ +++|+++|++||++||+||+|..+..+..|....+.. ...|+++.|+||++ |..||++++++
T Consensus 145 ~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~sK~~~~~~gg~~~~~~ 220 (357)
T 3lws_A 145 QREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA----GLFDSIYISFYKGLGGIAGAILAGPA 220 (357)
T ss_dssp BGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH----TTSSEEEEESSSTTCCSSCEEEEECH
T ss_pred cccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH----hcCCEEEEeccccCCCCceEEEEcCH
Confidence 7665 87775 9999999999999999999987322222222222221 22367788999999 55569999999
Q ss_pred HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCCCCeEE
Q 040324 325 ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVL-GDNDSPVMP 402 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~ 402 (488)
++++.+......+..+.......++++.++|+.. .+..++..++.+++.+.|+++ |+++. .+..+++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~ 291 (357)
T 3lws_A 221 AFCQTARIWKRRYGGDLISLYPYIVSADYYYELR---------KDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFH 291 (357)
T ss_dssp HHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEE
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEE
Confidence 9988886432211112122344445555666542 122344577788999999988 78773 456678888
Q ss_pred EEeCCc--chHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCC---CCHHHHHHHHHHHHHHH
Q 040324 403 IMVYNP--AKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISAS---HTKEDLIEALEVISRIG 464 (488)
Q Consensus 403 ~~~~~~--~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~---~t~edid~~l~~l~~~~ 464 (488)
+.+... ....++.+.|.++||.+.+..++. + +..++|+++... .+++++++++++|.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~-~-~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 292 LHFDGQAADISPKLEQVQEETGLGFVGYLVDK-D-GYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEEESCHHHHHHHHHHHHHHHCEESCSCCEEC-S-SEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred EEecCChHHHHHHHHHHHHhcCeEEecccccC-C-CceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 877654 235678889999999998743222 2 345899987643 68899999999998764
No 113
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.97 E-value=6.1e-29 Score=252.95 Aligned_cols=336 Identities=14% Similarity=0.200 Sum_probs=241.5
Q ss_pred CcceeEEeccccccCCCCCCccchHHHHHHHH--H-cCCCCC-CcccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcH
Q 040324 98 NVSRCLNLGSYNYLGFAAADEYCTPRVIDSLK--K-YSHSTC-SSRVDGGTLALHNELEECVARFVGKP--AAIVFGMGY 171 (488)
Q Consensus 98 ~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~--~-~~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs 171 (488)
++.-|||+.+. ++.+|.+.+++.+++. + ++.... ......+..+...++++.++++++.+ .++++++|+
T Consensus 21 ~~~iyld~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt 95 (423)
T 3lvm_A 21 KLPIYLDYSAT-----TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGAT 95 (423)
T ss_dssp CSSEECBTTTC-----CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHH
T ss_pred CCCEeecCCCc-----CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChH
Confidence 35667776532 3456888888888776 3 221111 11111223456689999999999986 678888888
Q ss_pred HHHhhhhhccc----CCCcEEEEeCCCchHHHHHH---HhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCC
Q 040324 172 VTNSSILPVLM----GKGSLIISDSLNHNSIVNGA---RGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPW 239 (488)
Q Consensus 172 ~a~~~~~~~~~----~~~~~Vl~~~~~h~~~~~~~---~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~ 239 (488)
+|+..++.++. ++++.|+++.+.|+++...+ ...|.+++.++.+ |+++|++.+++
T Consensus 96 ~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~------------- 162 (423)
T 3lvm_A 96 ESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD------------- 162 (423)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT-------------
T ss_pred HHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC-------------
Confidence 89887777665 47999999999999988776 4459999998876 78888887754
Q ss_pred ceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-c
Q 040324 240 KKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-G 318 (488)
Q Consensus 240 ~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g 318 (488)
+..+|+++++.+++|.+.++++|+++|++||++||+||+|+.+.+. .++...++|+++.|++|.+|+.| |
T Consensus 163 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~---------~~~~~~~~di~~~s~sK~~g~~g~G 233 (423)
T 3lvm_A 163 DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP---------IDLSQLKVDLMSFSGHKIYGPKGIG 233 (423)
T ss_dssp TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTSCCSEEEEESTTTTSCSSCE
T ss_pred CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCC---------cChhhcCCCEEEechHHhcCCCCeE
Confidence 4567888999999999999999999999999999999999854332 12222345899999999888766 8
Q ss_pred EEEeCHHHHHHHHhhCCC-----CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 040324 319 YIAGSKELIQYLKYNCPA-----HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEV 392 (488)
Q Consensus 319 ~i~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 392 (488)
+++++++.++.+.....+ .....+.++..++++.++++.+.. ..+++.++++++.+++++.|+++ |+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 308 (423)
T 3lvm_A 234 ALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKE-----EMATEMERLRGLRNRLWNGIKDIEEVYL 308 (423)
T ss_dssp EEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred EEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 998887765554332211 011234677777777788887632 35778899999999999999988 7877
Q ss_pred cCCCC---CCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCcc-----------------CCCCeEEEeecCCCCHHH
Q 040324 393 LGDND---SPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATP-----------------LLLARARICISASHTKED 452 (488)
Q Consensus 393 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~-----------------~~~~~iRi~~~~~~t~ed 452 (488)
..+.. ..++.+.+ ......++.+.|.+ |.+.+.. .+.+ ...+.+||+++..+|++|
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~--i~v~~g~-~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~ 384 (423)
T 3lvm_A 309 NGDLEHGAPNILNVSF-NYVEGESLIMALKD--LAVSSGS-ACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 384 (423)
T ss_dssp ESCSTTBCTTEEEEEE-TTSCHHHHHHHTTT--EECBCCC-C-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHH
T ss_pred eCCccccCCCeEEEEe-CCCCHHHHHHHHhh--heeccCc-cccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHH
Confidence 66543 24555555 33456678777776 5555411 1111 013789999999999999
Q ss_pred HHHHHHHHHHHHHHhCC
Q 040324 453 LIEALEVISRIGDLVGI 469 (488)
Q Consensus 453 id~~l~~l~~~~~~~~~ 469 (488)
+++++++|+++++++..
T Consensus 385 i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 385 IDYTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999988753
No 114
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.97 E-value=2e-28 Score=247.75 Aligned_cols=335 Identities=11% Similarity=0.075 Sum_probs=237.7
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCC--ChhhHHHHHHHHHHHhCCC-C-eEEeCCcHHHH
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGG--TLALHNELEECVARFVGKP-A-AIVFGMGYVTN 174 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g--~~~~~~~l~~~la~~~g~~-~-~i~~~sGs~a~ 174 (488)
+..|||+.++. ..++.+.+++.+++++...... +...++ ..+...++++.+++++|.+ + ++++++|++++
T Consensus 26 ~~~~ld~~~~~-----~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM-----LIPDSVATTVSTAFRRSGASTV-GAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC-----CCCHHHHHHHHHHHHHCCSSSC-SSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC-----CCCHHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 45677766422 3468999999999987532221 111111 2456789999999999975 3 45555556566
Q ss_pred hhhhhcc---cCCCcEEEEeCCCchHHHHHHHh----cCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCce
Q 040324 175 SSILPVL---MGKGSLIISDSLNHNSIVNGARG----SGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKK 241 (488)
Q Consensus 175 ~~~~~~~---~~~~~~Vl~~~~~h~~~~~~~~~----~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~ 241 (488)
..++.++ .++++.|+++.+.|+++...+.. .|.+++.++.+ |+++|++.+.+ ++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~-------------~~ 166 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK-------------ST 166 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT-------------TE
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC-------------Cc
Confidence 6666665 68899999999999987665543 68999998875 78888887753 34
Q ss_pred EEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCccc-EE
Q 040324 242 IMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGG-YI 320 (488)
Q Consensus 242 ~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~Gg-~i 320 (488)
.+|+++++++++|.+.++++|.++|+++|+++|+||+|+.|.... . ...+ ++|+++.|++|.+|+.+| ++
T Consensus 167 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~---~-~~~~-----~~d~~~~s~~K~~g~~~G~~~ 237 (406)
T 3cai_A 167 RLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLL---D-IRET-----DADVVTVNAHAWGGPPIGAMV 237 (406)
T ss_dssp EEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCC---C-HHHH-----CCSEEEEEGGGGTSCSCEEEE
T ss_pred eEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCC---C-chhc-----CCCEEEeehhhhcCCCcCeEE
Confidence 577778999999999999999999999999999999998543211 1 1112 248999999999875457 99
Q ss_pred EeCHHHHHHHHhhCCCC------cc-cCCCCHHHHHHHHHHHHHHhccCC----------CchHHHHHHHHHHHHHHHHH
Q 040324 321 AGSKELIQYLKYNCPAH------LY-ATSISPPAAEQIISAIQVVIGEDG----------SCRGAQKLARIRENSNFFRS 383 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~~------~~-~~~~~p~~~aa~~a~L~~i~~~~~----------~~~~~~~~~~~~~~~~~l~~ 383 (488)
++++++++.+......+ .+ ..+.++..++++.++++.+..... .+..++..++++++.+++.+
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 317 (406)
T 3cai_A 238 FRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMV 317 (406)
T ss_dssp ESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99998887665432110 01 234677777777788887742100 00256788889999999999
Q ss_pred HHHhC-CCeecCCC--CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCC------CccCCCCeEEEeecCCCCHHHHH
Q 040324 384 KLQKM-GFEVLGDN--DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFP------ATPLLLARARICISASHTKEDLI 454 (488)
Q Consensus 384 ~L~~~-g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~------~~~~~~~~iRi~~~~~~t~edid 454 (488)
.|+++ |+.+..+. .++++++.+.. ....++.+.|.++||.+.+...+ ..+.+.+.+||+++..+|++|++
T Consensus 318 ~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~ 396 (406)
T 3cai_A 318 SLRSLPLVMLIGRPEAQIPVVSFAVHK-VPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVD 396 (406)
T ss_dssp HHHTCTTEEECCCCSSBCSEEEEEETT-BCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHH
T ss_pred HHhcCCCeEEcCCccccCCEEEEEECC-cCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHH
Confidence 99987 77766543 24566666643 34678999999999999863200 11112478999999889999999
Q ss_pred HHHHHHHH
Q 040324 455 EALEVISR 462 (488)
Q Consensus 455 ~~l~~l~~ 462 (488)
+++++|++
T Consensus 397 ~~~~~l~~ 404 (406)
T 3cai_A 397 QLVRALAS 404 (406)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999875
No 115
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.97 E-value=4.2e-28 Score=244.12 Aligned_cols=332 Identities=14% Similarity=0.110 Sum_probs=239.4
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHhhh
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNSSI 177 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~ 177 (488)
..|+|.. +.++.++.+.+++.+++.. .. .....+...++++.++++++.+ .++++++|++++..+
T Consensus 9 ~~yl~~~-----~~~~~~~~v~~a~~~~~~~----~~----~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~ 75 (392)
T 2z9v_A 9 PVITLTA-----GPVNAYPEVLRGLGRTVLY----DY----DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAA 75 (392)
T ss_dssp CSEECSS-----SCCCCCHHHHHHTTSCCCC----TT----SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHH
T ss_pred cceeecC-----CCcCCCHHHHHHHhccccc----cc----cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHH
Confidence 4566654 2334456666665554432 10 1123455689999999999974 566667788888888
Q ss_pred hhcccCCCcEEEEeCCCchHHH--HHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcC
Q 040324 178 LPVLMGKGSLIISDSLNHNSIV--NGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY 250 (488)
Q Consensus 178 ~~~~~~~~~~Vl~~~~~h~~~~--~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~ 250 (488)
+.++.++|+.|+++.+.|+++. ..++..|.+++.++.+ |+++|++.+++. + +..+|++++++
T Consensus 76 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~----------~-~~~~v~~~~~~ 144 (392)
T 2z9v_A 76 AASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH----------P-EITVVSVCHHD 144 (392)
T ss_dssp HHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC----------T-TCCEEEEESEE
T ss_pred HHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC----------C-CCcEEEEeccC
Confidence 8888899999999999998763 2234468888888753 789999988641 1 23466778899
Q ss_pred CCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccC-Ccc-cEEEeCHHHHH
Q 040324 251 SMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG-SYG-GYIAGSKELIQ 328 (488)
Q Consensus 251 s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g-~~G-g~i~~~~~~~~ 328 (488)
+++|.+.++++|.++|++||+++|+||+|+.|.... ++...++|+++.|++|+++ +.| |++++++++++
T Consensus 145 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~---------~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~ 215 (392)
T 2z9v_A 145 TPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKT---------HPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWA 215 (392)
T ss_dssp GGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSC---------CGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHH
T ss_pred CCCceeccHHHHHHHHHHcCCeEEEEcccccCCccc---------ccccccceEEEecCcccccCCCceeEEEECHHHHH
Confidence 999999999999999999999999999998543321 1111234899999999765 456 99999999988
Q ss_pred HHHhhC------------------CCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCC
Q 040324 329 YLKYNC------------------PAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGF 390 (488)
Q Consensus 329 ~~~~~~------------------~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 390 (488)
.++... .......+.++..++++.++++.+... ..++..++++++.+++++.|+++|+
T Consensus 216 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~----g~~~~~~~~~~~~~~l~~~L~~~g~ 291 (392)
T 2z9v_A 216 KMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNE----GPEAVWARHALTAKAMRAGVTAMGL 291 (392)
T ss_dssp HHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 886421 011122345677777777788776321 1467888999999999999998888
Q ss_pred eecCCC----CCCeEEEEeCCcchHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeecC-CCCHHHHHHHHHHHHHHH
Q 040324 391 EVLGDN----DSPVMPIMVYNPAKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICISA-SHTKEDLIEALEVISRIG 464 (488)
Q Consensus 391 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~-~~t~edid~~l~~l~~~~ 464 (488)
.+..+. .+.++++.+.......++.++|.++ ||.+.+... +...+.+||++.. .+|++|+++++++|++++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~---~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~ 368 (392)
T 2z9v_A 292 SVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRG---ETLGKLTRIGHMGPTAQPIYAIAALTALGGAM 368 (392)
T ss_dssp CBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCG---GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred eeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCC---CCCCCeEEEeCcccccCHHHHHHHHHHHHHHH
Confidence 776522 3566777765444577899999998 999986321 2235789999644 789999999999999999
Q ss_pred HHhCCcc
Q 040324 465 DLVGIKY 471 (488)
Q Consensus 465 ~~~~~~~ 471 (488)
++++.+.
T Consensus 369 ~~~~~~~ 375 (392)
T 2z9v_A 369 NAAGRKL 375 (392)
T ss_dssp HHTTCCC
T ss_pred HHcCCCc
Confidence 9887654
No 116
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.96 E-value=1.1e-27 Score=244.22 Aligned_cols=302 Identities=14% Similarity=0.124 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHhC--------C--CCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHH-hcCCeEEEeeCC-
Q 040324 148 HNELEECVARFVG--------K--PAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGAR-GSGATIRVFQHN- 215 (488)
Q Consensus 148 ~~~l~~~la~~~g--------~--~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~-~~g~~v~~~~~~- 215 (488)
..++++.+|++++ . +..+++++|++++..++.+++++|+.|+++.++|+.+...+. ..|.+++.++.+
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~ 164 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCES 164 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCT
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCC
Confidence 4789999999886 2 345555555567788888889999999999999999876554 678999888753
Q ss_pred ------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCC
Q 040324 216 ------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGK 286 (488)
Q Consensus 216 ------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~ 286 (488)
|+++|++.+++....+ + +..+|++....+++|.+.+ +++|+++|++||++||+||+|+ .+..
T Consensus 165 ~~~~~~d~~~l~~~l~~~~~~~------~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~--~~~~ 235 (428)
T 1iay_A 165 SNNFKITSKAVKEAYENAQKSN------I-KVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYA--ATVF 235 (428)
T ss_dssp TTTTCCCHHHHHHHHHHHHHTT------C-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTG--GGCC
T ss_pred ccCCcCCHHHHHHHHHHHHhcC------C-ceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccc--cccc
Confidence 7889998887632221 1 2334555666788999988 9999999999999999999999 4444
Q ss_pred CCCCc---chhc------CCCCCCccEEEcccccccCCcc---cEEEe-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHH
Q 040324 287 TGRGV---CELL------GVDTSDVDIMMGTFSKSFGSYG---GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIIS 353 (488)
Q Consensus 287 ~g~~~---~~~~------~v~p~~~di~~~t~sK~~g~~G---g~i~~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a 353 (488)
++... .... ++.+ +..+++.|+||++|.+| ||+++ ++++++.+...... + +.+++.++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~a~~~ 310 (428)
T 1iay_A 236 DTPQFVSIAEILDEQEMTYCNK-DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF--G--LVSTQTQYFLAA 310 (428)
T ss_dssp SSSCCCCHHHHHTSGGGTTSCT-TSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT--S--CCCHHHHHHHHH
T ss_pred CCCCccCHHHhccccccccCCC-CcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhc--c--cCCHHHHHHHHH
Confidence 33321 1211 1112 22378899999998777 99988 68888888754331 2 367777777767
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCCc------chHHHHHHHHHHC-CceEE
Q 040324 354 AIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNP------AKVSSFSRECLKQ-NVAIV 426 (488)
Q Consensus 354 ~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~-Gi~v~ 426 (488)
+|+... ...+..++.+++++++.+++.+.|+++|+.+..+..+.++++.+... ....++.+.|+++ ||.+.
T Consensus 311 ~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~ 388 (428)
T 1iay_A 311 MLSDEK--FVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVS 388 (428)
T ss_dssp HTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECE
T ss_pred HhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEe
Confidence 665320 00113467888889999999999999888776555667777777532 1345789999987 99999
Q ss_pred eecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 427 TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 427 ~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+... +...+.+++||+++ .+|++++++++++|++++++.
T Consensus 389 ~~~~-~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 389 PGSS-FECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp EGGG-GTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHTT
T ss_pred Cchh-hCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhcc
Confidence 7432 11122478999997 589999999999999988653
No 117
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.96 E-value=4.5e-28 Score=245.89 Aligned_cols=337 Identities=16% Similarity=0.129 Sum_probs=231.4
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcC----CCCCCcccCCCChhhHHHHHHHHHHHh----CCC---CeEEe
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYS----HSTCSSRVDGGTLALHNELEECVARFV----GKP---AAIVF 167 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~----~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~---~~i~~ 167 (488)
|+.+|||+++++++...+ ..+.+++.+++++.. ..+. ...|. .++++.+++++ +.+ +++++
T Consensus 36 ~~~~i~l~~g~~~~~~~~-~~~~~~v~~a~~~~~~~~~~~Y~---~~~g~----~~lr~~la~~~~~~~~~~~~~~i~~t 107 (413)
T 3t18_A 36 REAVINAALGTLLDDKGK-IIALPSVYDRLDEMDRSHIASYA---PIEGE----KDYRKIVIDTLFGPYKPEGYISAIAT 107 (413)
T ss_dssp GGGCEECCSCCCBCTTSC-BCCCHHHHHHHHHSCHHHHHSCC---CTTCC----HHHHHHHHHHHHGGGCCSSEEEEEEE
T ss_pred ccceEeccccCccCCCCC-cCChHHHHHHHHhcCcccccCcC---CCCCC----HHHHHHHHHHHhcccCccccCcEEEc
Confidence 678999998877665433 233344444444421 1221 11233 56777777755 334 56666
Q ss_pred CCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC------CCHHHHHHHHHHHHhcCCCCCCCCCce
Q 040324 168 GMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH------NTPSHLEEVLREQIAEGQPRTRRPWKK 241 (488)
Q Consensus 168 ~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~------~d~~~Le~~l~~~~~~~~p~~~~~~~~ 241 (488)
++|++++..++.+++++||.|+++.|+|+.+...++..|.+++.++. .|+++|++.+++.... .++
T Consensus 108 ~g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~--------~~~ 179 (413)
T 3t18_A 108 PGGTGAIRSAIFSYLDEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRD--------SDR 179 (413)
T ss_dssp SHHHHHHHHHHHHHCCSSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHH--------CSE
T ss_pred CccHHHHHHHHHHhcCCCCEEEECCCCcccHHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhc--------CCC
Confidence 77777888888999999999999999999999999999999999885 1789999998763221 145
Q ss_pred EEEEEcCc-CCCCCCCCCh---HHHHHHHH------HcCcEEEEEccccccccCCCCCCc---chh-cCCCCCCccEEEc
Q 040324 242 IMVVVEGI-YSMEGELCKL---PEIITICK------RYKAYTYLDEAHSIGAVGKTGRGV---CEL-LGVDTSDVDIMMG 307 (488)
Q Consensus 242 ~~vi~e~v-~s~~G~~~~l---~~l~~l~~------~~g~~li~DE~~s~g~~g~~g~~~---~~~-~~v~p~~~di~~~ 307 (488)
+++++++. ++++|.+.+. ++|+++|+ +||++||+||+|+ .++.+|... ... .++.++...++++
T Consensus 180 ~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (413)
T 3t18_A 180 IASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYL--EFAGDGDQQRKFFEKFSNLPRNLFVVVAF 257 (413)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTG--GGSSSSSTTTGGGGGGTTCCTTEEEEEEE
T ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccc--cccCChhhHHHHHHHHhhcCCCeeEEEEE
Confidence 56666655 8999998874 55556666 9999999999998 777666432 222 2333322237789
Q ss_pred ccccccCCcc---cEEEe---CHHHHHHHHhhCCCCccc--CCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 040324 308 TFSKSFGSYG---GYIAG---SKELIQYLKYNCPAHLYA--TSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSN 379 (488)
Q Consensus 308 t~sK~~g~~G---g~i~~---~~~~~~~~~~~~~~~~~~--~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~ 379 (488)
||||++|.+| ||+++ ++++++.+.........+ .+.++..++++.++|+...-....++.++++++++++.+
T Consensus 258 S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 337 (413)
T 3t18_A 258 SMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRAD 337 (413)
T ss_dssp EHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999877 99998 999998887643211111 236666666666555421000000134567788899999
Q ss_pred HHHHHHHhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHH
Q 040324 380 FFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEV 459 (488)
Q Consensus 380 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~ 459 (488)
++.+.|++.|+++..+.++.++++.+ ....++.+.|.++||.+.+. .+++||+++. .+++++ +++
T Consensus 338 ~l~~~l~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gv~v~~g--------~~~iRis~~~-~~~~~~---l~~ 402 (413)
T 3t18_A 338 VFVTAAKENKLTMIPYFGGFFTFIPT---DKAFDIVKDLEKENIFTIPS--------AKGIRVAICG-VGEEKI---PKL 402 (413)
T ss_dssp HHHHHHHHTTCCCBCCCSSSCEEEEC---SCHHHHHHHHHHTTEECEEC--------SSEEEECTTT-SCGGGH---HHH
T ss_pred HHHHHHHHcCCCccCCCceEEEEeCC---CCHHHHHHHHHhCCEEEecC--------CCceEEEEee-CCHHHH---HHH
Confidence 99999999998887776666666544 24567888899999999952 4789999863 455555 788
Q ss_pred HHHHHHHhC
Q 040324 460 ISRIGDLVG 468 (488)
Q Consensus 460 l~~~~~~~~ 468 (488)
|.++++++.
T Consensus 403 l~~~l~~~~ 411 (413)
T 3t18_A 403 VQRLAFYTN 411 (413)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877663
No 118
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.96 E-value=1.4e-27 Score=242.74 Aligned_cols=344 Identities=13% Similarity=0.110 Sum_probs=235.6
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CCC---CeEEeCCcH
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GKP---AAIVFGMGY 171 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~---~~i~~~sGs 171 (488)
|+.+|||+.+.|..... ++.+.+++.+++.+..... ...++......++++.+++++ +.+ .++++++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~-~~~~~~~v~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~ 112 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEG-NLVFLKTVKEEYLSLSDSE---HVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGT 112 (418)
T ss_dssp GGGCEECCSSCCBCTTS-CBCCCHHHHHHHHTCCHHH---HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHH
T ss_pred CCCeEECCCCcccCCCC-CccccHHHHHHHHHhcccc---cCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchH
Confidence 56889998665544332 2334455555554421100 001112222367888888766 344 566666777
Q ss_pred HHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q 040324 172 VTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVV 245 (488)
Q Consensus 172 ~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi 245 (488)
+++..++.+++++||.|+++.|+|+.+...++..|.+++.++.. |+++|++.+++.... .++.+++
T Consensus 113 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~--------~~~~~vi 184 (418)
T 3rq1_A 113 GGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAK--------QTNVVVI 184 (418)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHH--------CSEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhcc--------CCCEEEE
Confidence 78888888999999999999999999999999999999998742 789999998763221 1454566
Q ss_pred EcCc-CCCCCCCCC---hHHHHHHHH------HcCcEEEEEccccccccCCCCCC---cc-hhcCCCCCCccEEEccccc
Q 040324 246 VEGI-YSMEGELCK---LPEIITICK------RYKAYTYLDEAHSIGAVGKTGRG---VC-ELLGVDTSDVDIMMGTFSK 311 (488)
Q Consensus 246 ~e~v-~s~~G~~~~---l~~l~~l~~------~~g~~li~DE~~s~g~~g~~g~~---~~-~~~~v~p~~~di~~~t~sK 311 (488)
+... ++++|.+.+ +++|+++|+ +||+++|+||+|+ .++.++.. .. ...++.++...+++.||||
T Consensus 185 ~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 262 (418)
T 3rq1_A 185 FNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYL--DYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSK 262 (418)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTG--GGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTT
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccc--cccCChHHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 6555 899999887 555666666 8999999999998 77766542 11 2223332211377899999
Q ss_pred ccCCcc---cEEEe---CHHHHHHHHhhCCCCcc--cCCCCHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHH
Q 040324 312 SFGSYG---GYIAG---SKELIQYLKYNCPAHLY--ATSISPPAAEQIISAIQVVIG-EDGSCRGAQKLARIRENSNFFR 382 (488)
Q Consensus 312 ~~g~~G---g~i~~---~~~~~~~~~~~~~~~~~--~~~~~p~~~aa~~a~L~~i~~-~~~~~~~~~~~~~~~~~~~~l~ 382 (488)
++|.+| ||+++ ++++++.+......... ..+.++..++++.+.|+.... +...++.++++++++++.+++.
T Consensus 263 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (418)
T 3rq1_A 263 GFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFK 342 (418)
T ss_dssp TTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998777 99998 89999888654321111 123666666666665532100 0000123456778899999999
Q ss_pred HHHHhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHH
Q 040324 383 SKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISR 462 (488)
Q Consensus 383 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~ 462 (488)
+.|+++|+++..+.++.++++.+. ...++++.|.++||.+.+. .+++||++. .+|++++++++++|++
T Consensus 343 ~~L~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~g--------~~~iRis~~-~~~~~~i~~~~~~l~~ 410 (418)
T 3rq1_A 343 QEAAQVGLPMLPYRGGFFITIPTD---SANAICEELKKEHIYVIAL--------ANGIRIAAC-GIPKCQMTGLAEKIYN 410 (418)
T ss_dssp HHHHHHTCCCCCCCSSSEEEEECT---THHHHHHHHHHTTEECEEC--------SSEEEEEGG-GSCHHHHTTHHHHHHH
T ss_pred HHHHhcCCCCCCCCceEEEEcCCC---CHHHHHHHHHhCCEEEecC--------CCCeEEEEe-cCCHHHHHHHHHHHHH
Confidence 999988988877666666555443 4567888899999999962 368999975 5799999999999999
Q ss_pred HHHHhC
Q 040324 463 IGDLVG 468 (488)
Q Consensus 463 ~~~~~~ 468 (488)
++++++
T Consensus 411 ~l~~~~ 416 (418)
T 3rq1_A 411 AMKSLG 416 (418)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 998864
No 119
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.96 E-value=9.7e-28 Score=237.91 Aligned_cols=330 Identities=12% Similarity=0.070 Sum_probs=229.8
Q ss_pred CCCCceEEEeeccccCCcccccccCCcceeEEeccc-cccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHH
Q 040324 73 SAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSY-NYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNEL 151 (488)
Q Consensus 73 ~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~-~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l 151 (488)
++.|.++++.+ |+++|||+++ ++++ .+|.+.+++.+++... ..+ +... ..++
T Consensus 3 ~~~g~~~~~~~---------------g~~~id~~~~~~~~~---~~~~v~~a~~~~~~~~-~~y-------~~~~-~~~l 55 (350)
T 3fkd_A 3 FGHGDEGITPL---------------SSEIVNFSTTVWTDG---DKDHLEKHLVENLNCI-RHY-------PEPD-AGTL 55 (350)
T ss_dssp ----------------------------CCEECSCCSCCCS---CCHHHHHHHHHTGGGG-GSC-------CCTT-CHHH
T ss_pred ccccchHhhhc---------------cccEEEccCCCCCCC---CCHHHHHHHHHhHhHH-hcC-------CCCc-HHHH
Confidence 45677888887 8999999865 3333 3578888888877432 112 1111 2689
Q ss_pred HHHHHHHhCCC--CeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC-CCHHHHHHHHHHHH
Q 040324 152 EECVARFVGKP--AAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH-NTPSHLEEVLREQI 228 (488)
Q Consensus 152 ~~~la~~~g~~--~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~-~d~~~Le~~l~~~~ 228 (488)
++.+|++++.+ .++++++|++++..++.++. +|.|+++.++|..+...++..|.+++.++. ++.+.+.-
T Consensus 56 r~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~------ 127 (350)
T 3fkd_A 56 RQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF------ 127 (350)
T ss_dssp HHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC------
T ss_pred HHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc------
Confidence 99999999874 45555666667777777776 899999999999999999999999999998 54333211
Q ss_pred hcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcC-cEEEEEccccccccCCCCCCcchhcCCCCCCccEEEc
Q 040324 229 AEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK-AYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMG 307 (488)
Q Consensus 229 ~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g-~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~ 307 (488)
+..+ +|++....+++|.+.+++++.++++.++ .+||+||+|+ .++..+.......+ ..+.++++.
T Consensus 128 ---------~~~~-~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~--~~~~~~~~~~~~~~--~~~~~i~~~ 193 (350)
T 3fkd_A 128 ---------SNMD-FCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYV--SFTTEEVIRPADIK--GRKNLVMVY 193 (350)
T ss_dssp ---------TTCS-EEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTT--TSCSSCCCCGGGGT--TCSSEEEEE
T ss_pred ---------CCCC-EEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchh--hhccCcchhhHHhh--cCCCEEEEe
Confidence 1244 4445677899999999999999998886 7999999998 56655544332222 344578899
Q ss_pred ccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Q 040324 308 TFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSK 384 (488)
Q Consensus 308 t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (488)
||||.+|.+| ||+++++++++.+...... + +.+++.++++.++|+... ...+.. ++..++.+++.+.
T Consensus 194 S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~-----~~~~~~-~~~~~~~~~l~~~ 263 (350)
T 3fkd_A 194 SFSHAYGIPGLRIGYIVANKDFMKRVAAFSTP--W--AVNALAIEAAKFILIHPA-----QFTLPI-RKWQRNTVDFITA 263 (350)
T ss_dssp ESHHHHSCGGGCCEEEECCHHHHHHHHTTCCT--T--CSCHHHHHHHHHHHHCTT-----TTCCCH-HHHHHHHHHHHHH
T ss_pred cCchhccCcchheEeEEeCHHHHHHHHHhCCC--C--CCCHHHHHHHHHHHhCHH-----HHHHHH-HHHHHHHHHHHHH
Confidence 9999999766 9999999999999876542 3 378888888888877431 011222 2333888899999
Q ss_pred HHhC-CCeecCCCCCCeEEEEeCCcchHHHHHHHHHH-CCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHH
Q 040324 385 LQKM-GFEVLGDNDSPVMPIMVYNPAKVSSFSRECLK-QNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISR 462 (488)
Q Consensus 385 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~ 462 (488)
|+++ |+.+.. ..+.++++.+... ...++.+.|++ +||.+.+.. .+.+.+.+++||+++ +++|+++++++|++
T Consensus 264 L~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~L~~~~gi~v~~g~-~f~~~~~~~iRis~~---~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 264 LNRLDGVEVHP-SGTTFFLLRLKKG-TAAELKKYMLEEYNMLIRDAS-NFRGLDESYVRITTQ---RPAQNQLFIKALET 337 (350)
T ss_dssp HHHSTTEEECC-CSSSEEEEEESSS-CHHHHHHHHHHTTCEECEECT-TSTTCCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred HhcCCCcEECC-CCCcEEEEECCCC-CHHHHHHHHHHHCCEEEEeCc-cCCCCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 9988 777754 4566777777654 67789999999 899999743 222344689999984 89999999999988
Q ss_pred HHHHh
Q 040324 463 IGDLV 467 (488)
Q Consensus 463 ~~~~~ 467 (488)
+.++.
T Consensus 338 ~~~~~ 342 (350)
T 3fkd_A 338 FLEKY 342 (350)
T ss_dssp HHTC-
T ss_pred HHHHh
Confidence 76543
No 120
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=2.3e-28 Score=244.96 Aligned_cols=331 Identities=17% Similarity=0.139 Sum_probs=236.4
Q ss_pred eEEeccccccCCCCCCccchHHHHHHHHHcCCCCCC-cccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHhhhh
Q 040324 102 CLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCS-SRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNSSIL 178 (488)
Q Consensus 102 ~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~-~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~~ 178 (488)
|+|++++ ++.++.+.+++.+++.+......+ .....+..+...++++.+++++|.+ .++++++|++++..++
T Consensus 3 yld~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~ 77 (382)
T 4eb5_A 3 YFDYTSA-----KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAI 77 (382)
T ss_dssp BCBTTTC-----CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHH
T ss_pred eeccCCC-----CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHH
Confidence 5676532 355789999999998763211111 0000122456789999999999975 4666667788888888
Q ss_pred hccc----CCCcEEEEeCCCchHHHHHHHh---cCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEE
Q 040324 179 PVLM----GKGSLIISDSLNHNSIVNGARG---SGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVV 246 (488)
Q Consensus 179 ~~~~----~~~~~Vl~~~~~h~~~~~~~~~---~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~ 246 (488)
.++. ++|+.|+++.+.|+++...+.. .|.+++.++.+ |+++|++.+++ ++.+|++
T Consensus 78 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------------~~~~v~~ 144 (382)
T 4eb5_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-------------DTILVSV 144 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-------------TEEEEEC
T ss_pred HHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-------------CCeEEEE
Confidence 8877 8999999999999998777653 58899888863 78888877653 3456778
Q ss_pred cCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cEEEeCHH
Q 040324 247 EGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYIAGSKE 325 (488)
Q Consensus 247 e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i~~~~~ 325 (488)
+.+++++|.+.++++|.++|++||++ |+||+|++|... ... .. .+.|+++.|++|.+|..| |+++.+++
T Consensus 145 ~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~---~~~-~~-----~~~di~~~s~sK~~g~~g~G~~~~~~~ 214 (382)
T 4eb5_A 145 QHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIE---VDV-EK-----IGADMLTISSNDIYGPKGVGALWIRKE 214 (382)
T ss_dssp CSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBC---CCH-HH-----HTCSEEEEETGGGTCCSSCEEEEEETT
T ss_pred eccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcc---cCc-cc-----cCCCEEEeehHHhcCCCceEEEEEccc
Confidence 89999999999999999999999999 999999853221 111 11 134899999999988766 88887765
Q ss_pred HHHHHHhhCCC-----CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCC--
Q 040324 326 LIQYLKYNCPA-----HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDND-- 397 (488)
Q Consensus 326 ~~~~~~~~~~~-----~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-- 397 (488)
. .+.....+ .....+.++..++++.++++.+.. ..++..++++++.+++.+.|+++ |+.+..+.+
T Consensus 215 ~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 287 (382)
T 4eb5_A 215 A--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAM-----EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKR 287 (382)
T ss_dssp C--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSB
T ss_pred c--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccC
Confidence 3 11111110 011123566666777778877631 35678889999999999999987 777765432
Q ss_pred -CCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCc------------c----CCCCeEEEeecCCCCHHHHHHHHHHH
Q 040324 398 -SPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPAT------------P----LLLARARICISASHTKEDLIEALEVI 460 (488)
Q Consensus 398 -~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~------------~----~~~~~iRi~~~~~~t~edid~~l~~l 460 (488)
+.++++.+. .....++.+.|.++||.+.+..+... + .+.+.+||+++..+|++|+++++++|
T Consensus 288 ~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 366 (382)
T 4eb5_A 288 LPNNVNVRFS-YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVL 366 (382)
T ss_dssp CTTEEEEEET-TSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEeC-CcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456666665 34567899999989999986321000 0 12478999998889999999999999
Q ss_pred HHHHHHhC
Q 040324 461 SRIGDLVG 468 (488)
Q Consensus 461 ~~~~~~~~ 468 (488)
++++++++
T Consensus 367 ~~~~~~~~ 374 (382)
T 4eb5_A 367 PGVIERLR 374 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 121
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=2.4e-27 Score=238.68 Aligned_cols=298 Identities=20% Similarity=0.172 Sum_probs=221.0
Q ss_pred hhhHHHHHHHHHHHhCCCC---eEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHH--HHHHhcCCeEEEeeC-----
Q 040324 145 LALHNELEECVARFVGKPA---AIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIV--NGARGSGATIRVFQH----- 214 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~---~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~--~~~~~~g~~v~~~~~----- 214 (488)
.+...++++.+++++|.+. ++++++|++++..++.++.++|+.|+++.+.|+++. ..++..|.+++.++.
T Consensus 51 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 130 (393)
T 2huf_A 51 LKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQS 130 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCC
Confidence 4567899999999999753 445577788888888888889999999999988743 224557889888874
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchh
Q 040324 215 NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCEL 294 (488)
Q Consensus 215 ~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~ 294 (488)
.|+++|++.+++. +..+|++..+.+++|.+.++++|.++|++||+++|+||+|++|...
T Consensus 131 ~d~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~--------- 189 (393)
T 2huf_A 131 LSLDEIRDALLIH------------KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAP--------- 189 (393)
T ss_dssp CCHHHHHHHHHHH------------CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBC---------
T ss_pred CCHHHHHHHHhcc------------CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCC---------
Confidence 4899999988752 2235556788899999999999999999999999999999754321
Q ss_pred cCCCCCCccEEEcccccccC-Ccc-cEEEeCHHHHHHHHhhC---CCCc-----------------c-cCCCCHHHHHHH
Q 040324 295 LGVDTSDVDIMMGTFSKSFG-SYG-GYIAGSKELIQYLKYNC---PAHL-----------------Y-ATSISPPAAEQI 351 (488)
Q Consensus 295 ~~v~p~~~di~~~t~sK~~g-~~G-g~i~~~~~~~~~~~~~~---~~~~-----------------~-~~~~~p~~~aa~ 351 (488)
.++...++|+++.|++|+++ .+| |++++++++++.+.... .++. + ..+.+...++++
T Consensus 190 ~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 269 (393)
T 2huf_A 190 MFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGL 269 (393)
T ss_dssp CCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHH
T ss_pred cchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHH
Confidence 12222346899999999864 456 89999999999887541 1111 0 123556666666
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCC---CCCeEEEEeCCcchHHHHHHHHHHC-CceEEe
Q 040324 352 ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDN---DSPVMPIMVYNPAKVSSFSRECLKQ-NVAIVT 427 (488)
Q Consensus 352 ~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~ 427 (488)
.++++.+... ..++..++++++.+++.+.|+++|+.+..+. ...++++.+.......++.+.|+++ ||.+.+
T Consensus 270 ~~al~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~ 345 (393)
T 2huf_A 270 REAIAMACEE----GLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISG 345 (393)
T ss_dssp HHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBC
T ss_pred HHHHHHHHHh----CHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEec
Confidence 6788776311 2567888999999999999999888776553 2346667665444567899999876 999885
Q ss_pred ecCCCccCCCCeEEEee-cCCCCHHHHHHHHHHHHHHHHHhCCc
Q 040324 428 VGFPATPLLLARARICI-SASHTKEDLIEALEVISRIGDLVGIK 470 (488)
Q Consensus 428 ~~~~~~~~~~~~iRi~~-~~~~t~edid~~l~~l~~~~~~~~~~ 470 (488)
... +...+++||++ +...+++|+++++++|++++++++.+
T Consensus 346 g~~---~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 386 (393)
T 2huf_A 346 GLG---PTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPD 386 (393)
T ss_dssp CCG---GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC-
T ss_pred Ccc---cccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 221 12357899999 55568999999999999999988654
No 122
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=9.1e-28 Score=237.86 Aligned_cols=310 Identities=12% Similarity=0.095 Sum_probs=227.6
Q ss_pred CCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHhhhhhcccCCCcEEEEeCC
Q 040324 116 ADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNSSILPVLMGKGSLIISDSL 193 (488)
Q Consensus 116 ~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~ 193 (488)
.+|.+.+++.+++.. . ......+...++++.+++++|.+ .++++++|++++..++.++.++|+.|+++.+
T Consensus 12 ~~~~v~~a~~~~~~~----~----~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~ 83 (352)
T 1iug_A 12 LHPKALEALARPQLH----H----RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVY 83 (352)
T ss_dssp CCHHHHHHHHSCCCC----T----TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCHHHHHHhccCCCC----c----cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeC
Confidence 356666666554431 1 11123345689999999999985 4566668888888888888899999999999
Q ss_pred CchHHH--HHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHH
Q 040324 194 NHNSIV--NGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITIC 266 (488)
Q Consensus 194 ~h~~~~--~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~ 266 (488)
.|+++. ..++..|.+++.++.+ |++++++ + +..+|+++.+++++|.+.++++|.++|
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~ 147 (352)
T 1iug_A 84 GKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK---E-------------GYAGLLLVHSETSTGALADLPALARAF 147 (352)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC---S-------------SCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred CchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc---c-------------CCcEEEEEEecCCcceecCHHHHHHHH
Confidence 999875 2345578998888753 4555443 1 233567788999999999999999999
Q ss_pred HHc--CcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCC-cc-cEEEeCHHHHHH---------HH--
Q 040324 267 KRY--KAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS-YG-GYIAGSKELIQY---------LK-- 331 (488)
Q Consensus 267 ~~~--g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~-~G-g~i~~~~~~~~~---------~~-- 331 (488)
++| |+++|+||+|++|... +++...+.|+++.|++|++++ .| |+++.++++++. +.
T Consensus 148 ~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~ 218 (352)
T 1iug_A 148 KEKNPEGLVGADMVTSLLVGE---------VALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARE 218 (352)
T ss_dssp HHHCTTCEEEEECTTTBTTBC---------CCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHH
T ss_pred HhhCCCCEEEEECCccccCcc---------eeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHH
Confidence 999 9999999999854321 111112358999999996644 46 999999887654 21
Q ss_pred --hhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCC-CCCeEEEEeCCc
Q 040324 332 --YNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDN-DSPVMPIMVYNP 408 (488)
Q Consensus 332 --~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~ 408 (488)
..... ....+.++..++++.++++.+.. +.++..++++++.+++.+.|+++|+.+..+. .+.++++.+...
T Consensus 219 ~~~~~~~-~~~~~~~~~~~~a~~~al~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 292 (352)
T 1iug_A 219 LKAQKEG-ESAWTPAINLVLAVAAVLEEVLP-----RLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEG 292 (352)
T ss_dssp HHHHTTT-CCSSCCCHHHHHHHHHHHHHHGG-----GHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTT
T ss_pred HhhcccC-CCCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCC
Confidence 11111 12334777777888888887632 3567888999999999999999888887653 567778777544
Q ss_pred chHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 409 AKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 409 ~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
....++.+.|.++||.+.+.. .+...+.+||+++..+|++|+++++++|+++++++
T Consensus 293 ~~~~~~~~~l~~~gi~v~~~~---~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 293 VPYARVKEAFAQRGAVIAGGQ---GPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp CCHHHHHHHHHTTTEECEECC---GGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCEEEEeCC---CccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 457789999999999998633 22345789999988889999999999999998876
No 123
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.96 E-value=2.1e-28 Score=247.32 Aligned_cols=341 Identities=17% Similarity=0.152 Sum_probs=229.4
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHH--hC-C-CCeEEeCCcHH-H
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARF--VG-K-PAAIVFGMGYV-T 173 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~--~g-~-~~~i~~~sGs~-a 173 (488)
|+++|||+++.+ .++ .+|.+.+++.+++++...... ...++......++++.+|++ .| . ++.+++++|+. +
T Consensus 32 ~~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 32 QHTVINLSIGDT-TQP-LNASVAEAFASSIARLSSPTT--CRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp TSCCEECSSCCC-CCC-CCHHHHHHHHHHHHHHTSSSC--CCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred CCceEeccCCCC-CCC-CCHHHHHHHHHHHhccccccc--ccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence 577899976543 333 468899999999887532110 11122233458999999999 46 3 34555555554 5
Q ss_pred HhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCe-EEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCC
Q 040324 174 NSSILPVLMGKGSLIISDSLNHNSIVNGARGSGAT-IRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSM 252 (488)
Q Consensus 174 ~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~-v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~ 252 (488)
+..++ .+..+|+.|+++.|+|+.+...++..|.+ +..++.++-+.+...+++. +..++++++ ...++
T Consensus 108 l~~~~-~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~----------~~~~~v~l~-~p~np 175 (400)
T 3asa_A 108 LFRLL-SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED----------THIDILCLC-SPNNP 175 (400)
T ss_dssp HHHHH-HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT----------CCCSEEEEE-SSCTT
T ss_pred HHHHH-HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc----------cCccEEEEe-CCCCC
Confidence 44443 45578999999999999999888889988 8888865211111001100 124445554 77889
Q ss_pred CCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC-CCccEEEcccccccCCcc---cEEEeCHH
Q 040324 253 EGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT-SDVDIMMGTFSKSFGSYG---GYIAGSKE 325 (488)
Q Consensus 253 ~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p-~~~di~~~t~sK~~g~~G---g~i~~~~~ 325 (488)
+|.+.+ +++|+++|++||+++|+||+|+ .++..+........++. .++++++.||||++|.+| ||++++++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~ 253 (400)
T 3asa_A 176 TGTVLNKDQLRAIVHYAIEHEILILFDAAYS--TFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQE 253 (400)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTG--GGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTT
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEchhh--hhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChh
Confidence 998886 7789999999999999999999 55544432222223321 234688999999998777 99999888
Q ss_pred H-------HHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCC
Q 040324 326 L-------IQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDS 398 (488)
Q Consensus 326 ~-------~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 398 (488)
+ ++.+.......++ .+.+++.++++.++|+.. +.++.+++++++.+++.+.|++.|+.+..+.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 325 (400)
T 3asa_A 254 LTYADGHFVIQDWERFLSTTF-NGASIPAQEAGVAGLSIL-------PQLEAIHYYRENSDLLRKALLATGFEVFGGEHA 325 (400)
T ss_dssp CBCTTSCBHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHHHHHHTTCEEEECSSS
T ss_pred hccchhhhHHHHHHHHhccCc-cCCChHHHHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCc
Confidence 7 5555322111122 136788777777777652 346788889999999999999999888766567
Q ss_pred CeEEEE-eCCcchHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 399 PVMPIM-VYNPAKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 399 ~~~~~~-~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
+++++. +.......++.+.|+++ ||.+.+... +.+.+.+++||+. ..|++++++++++|++++++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~-f~~~~~~~iRis~--~~~~e~i~~~l~~l~~~~~~~~ 394 (400)
T 3asa_A 326 PYLWVKPTQANISDRDLFDFFLREYHIAITPGIG-FGRSGSGFVRFSS--LGKREDILAACERLQMAPALQS 394 (400)
T ss_dssp SEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGG-GCGGGTTCEEEEC--CSCHHHHHHHHHHHHC------
T ss_pred eEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhH-hCCCCCCEEEEEe--eCCHHHHHHHHHHHHHHHHhhh
Confidence 888887 64333445688888865 999997321 1223357899984 6899999999999999886653
No 124
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.96 E-value=8.6e-28 Score=240.42 Aligned_cols=331 Identities=17% Similarity=0.141 Sum_probs=235.9
Q ss_pred eEEeccccccCCCCCCccchHHHHHHHHHcCCCCCC-cccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHhhhh
Q 040324 102 CLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCS-SRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNSSIL 178 (488)
Q Consensus 102 ~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~-~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~~ 178 (488)
|+|+++ .+..+|.+.+++.+++.+....... .....+..+...++++.++++++.+ .++++++|++++..++
T Consensus 3 yld~~~-----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~ 77 (382)
T 4hvk_A 3 YFDYTS-----AKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAI 77 (382)
T ss_dssp BCBTTT-----CCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHH
T ss_pred eecCCC-----cCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHH
Confidence 566543 2334688999999998774221111 1111123456689999999999975 3566666777888888
Q ss_pred hccc----CCCcEEEEeCCCchHHHHHHHh---cCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEE
Q 040324 179 PVLM----GKGSLIISDSLNHNSIVNGARG---SGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVV 246 (488)
Q Consensus 179 ~~~~----~~~~~Vl~~~~~h~~~~~~~~~---~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~ 246 (488)
.++. ++|+.|+++.+.|+++...+.. .|.+++.++.+ |+++|++.+++ ++.+|++
T Consensus 78 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------------~~~~v~~ 144 (382)
T 4hvk_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-------------DTILVSV 144 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-------------TEEEEEC
T ss_pred HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-------------CceEEEE
Confidence 8777 8999999999999998876554 58999988865 78888887753 4568888
Q ss_pred cCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cEEEeCHH
Q 040324 247 EGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYIAGSKE 325 (488)
Q Consensus 247 e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i~~~~~ 325 (488)
+++++++|.+.++++|.++|++||+ +|+||+|+.+.+.. ++...++|+++.|++|.+|..| |+++.+++
T Consensus 145 ~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~---------~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~ 214 (382)
T 4hvk_A 145 QHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEV---------DVEKIGADMLTISSNDIYGPKGVGALWIRKE 214 (382)
T ss_dssp CSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCC---------CHHHHTCSEEEEESGGGTSCTTCEEEEEETT
T ss_pred ECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCC---------CchhcCCCEEEEeHHHhcCCCceEEEEEcCc
Confidence 9999999999999999999999999 99999998544321 1111234899999999888766 77777654
Q ss_pred HHHHHHhhCCCC-----cccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCC--
Q 040324 326 LIQYLKYNCPAH-----LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDND-- 397 (488)
Q Consensus 326 ~~~~~~~~~~~~-----~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-- 397 (488)
. .+.....+. ....+.++..++++.++++.+. +..++..++++++.+++.+.|+++ |+.+..+..
T Consensus 215 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 287 (382)
T 4hvk_A 215 A--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITA-----MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKR 287 (382)
T ss_dssp C--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSB
T ss_pred c--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCcccc
Confidence 3 111111100 0123357777777778877653 145788899999999999999987 777765442
Q ss_pred -CCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccC----------C------CCeEEEeecCCCCHHHHHHHHHHH
Q 040324 398 -SPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPL----------L------LARARICISASHTKEDLIEALEVI 460 (488)
Q Consensus 398 -~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~----------~------~~~iRi~~~~~~t~edid~~l~~l 460 (488)
..++.+.+. .....++.+.|.++||.+.+..+...+. + .+.+||+++..+|++|+++++++|
T Consensus 288 ~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l 366 (382)
T 4hvk_A 288 LPNNVNVRFS-YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVL 366 (382)
T ss_dssp CTTEEEEEET-TCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEEC-CCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 235555553 3456789999999999998632211110 0 478999999889999999999999
Q ss_pred HHHHHHhC
Q 040324 461 SRIGDLVG 468 (488)
Q Consensus 461 ~~~~~~~~ 468 (488)
+++++++.
T Consensus 367 ~~~~~~~~ 374 (382)
T 4hvk_A 367 PGVIERLR 374 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 125
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=1.5e-27 Score=242.21 Aligned_cols=327 Identities=14% Similarity=0.132 Sum_probs=234.8
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHc-CCCCCCcccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKY-SHSTCSSRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNS 175 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~-~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~ 175 (488)
+..|||+.++ ++.++.+.+++.+++++. +.....++...+..+...++++.+++++|.+ .++++++|++++.
T Consensus 28 ~~~yld~~~~-----~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~ 102 (416)
T 1qz9_A 28 GVIYLDGNSL-----GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLF 102 (416)
T ss_dssp TCEECCTTTS-----CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHH
T ss_pred CeEeecCCCc-----CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHH
Confidence 6778887532 345788999999999763 2111111111133466789999999999975 4555555555555
Q ss_pred hhhhccc------CCCc-EEEEeCCCchHHHHHHH----hc--CCeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceE
Q 040324 176 SILPVLM------GKGS-LIISDSLNHNSIVNGAR----GS--GATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKI 242 (488)
Q Consensus 176 ~~~~~~~------~~~~-~Vl~~~~~h~~~~~~~~----~~--g~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~ 242 (488)
.++.++. ++|+ +|+++.++|+++...+. .. |.+++.++. +++|++.+.+ ++.
T Consensus 103 ~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~l~~~i~~-------------~~~ 167 (416)
T 1qz9_A 103 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--PEELPQAIDQ-------------DTA 167 (416)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--GGGHHHHCST-------------TEE
T ss_pred HHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--HHHHHHHhCC-------------Cce
Confidence 6666654 7777 57778889998765532 23 888888887 7777776643 355
Q ss_pred EEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccC-C-cc-cE
Q 040324 243 MVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG-S-YG-GY 319 (488)
Q Consensus 243 ~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g-~-~G-g~ 319 (488)
+|+++++++++|.+.++++|+++|++||+++|+||+|++|... ... ..+ +.|+++.|++|+++ + ++ |+
T Consensus 168 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~---~~~-~~~-----~~d~~~~s~~K~l~~g~~~~g~ 238 (416)
T 1qz9_A 168 VVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP---VDL-HQA-----GADYAIGCTYKYLNGGPGSQAF 238 (416)
T ss_dssp EEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---CCH-HHH-----TCSEEEECSSSTTCCCTTCCCE
T ss_pred EEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcC---CCh-hhc-----CCCEEEecCcccCCCCCCCeEE
Confidence 7788999999999999999999999999999999999854321 111 112 24899999999973 3 45 89
Q ss_pred EEeCHHHHHHHHhhCCCC--------------------cc-cCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 040324 320 IAGSKELIQYLKYNCPAH--------------------LY-ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENS 378 (488)
Q Consensus 320 i~~~~~~~~~~~~~~~~~--------------------~~-~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~ 378 (488)
++.++++++.+.....++ .+ ..+.++..++++.++|+.+.. +..++..++++++.
T Consensus 239 l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~----~~~~~~~~~~~~~~ 314 (416)
T 1qz9_A 239 VWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQ----TDMASLRRKSLALT 314 (416)
T ss_dssp EEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHH
T ss_pred EEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHH
Confidence 999988776654322110 11 124677777788888887632 24678899999999
Q ss_pred HHHHHHHHhC----CCeecCCC----CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeec-CCCC
Q 040324 379 NFFRSKLQKM----GFEVLGDN----DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICIS-ASHT 449 (488)
Q Consensus 379 ~~l~~~L~~~----g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~-~~~t 449 (488)
+++.+.|++. |+.+..+. .++++++.+.. ..++.+.|.++||.+.. .+.+.+||+++ ..+|
T Consensus 315 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~gi~~~~-------~~~~~lRis~~~~~~t 384 (416)
T 1qz9_A 315 DLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---GYAVIQALIDRGVIGDY-------REPRIMRFGFTPLYTT 384 (416)
T ss_dssp HHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---HHHHHHHHHTTTEECEE-------ETTTEEEEECCTTTCC
T ss_pred HHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC---HHHHHHHHHhCCcEecc-------CCCCeEEEeCcccCCC
Confidence 9999999986 88887653 25677776643 56899999999998753 12478999997 5889
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 040324 450 KEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 450 ~edid~~l~~l~~~~~~~~ 468 (488)
++|+++++++|++++++..
T Consensus 385 ~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 385 FTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999999988753
No 126
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.96 E-value=1.1e-26 Score=233.95 Aligned_cols=297 Identities=15% Similarity=0.151 Sum_probs=222.5
Q ss_pred hhHHHHHHHHHHHhCCC-C--eEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHH--HHHHhcCCeEEEeeC-----C
Q 040324 146 ALHNELEECVARFVGKP-A--AIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIV--NGARGSGATIRVFQH-----N 215 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~-~--~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~--~~~~~~g~~v~~~~~-----~ 215 (488)
....++++.++++++.+ + ++++++|++++..++.++..+|+.|++..+.|+++. ..++..|.+++.++. .
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 130 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPF 130 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCC
Confidence 45689999999999975 3 445566777888888888899999999999999974 356778999988884 4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhc
Q 040324 216 TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELL 295 (488)
Q Consensus 216 d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~ 295 (488)
|+++|++.+++. +..+|++..+.+++|.+.++++|.++|++||+++|+||+|++|... .
T Consensus 131 d~~~l~~~l~~~------------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~---------~ 189 (396)
T 2ch1_A 131 SLETLARAIELH------------QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVP---------F 189 (396)
T ss_dssp CHHHHHHHHHHH------------CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBC---------C
T ss_pred CHHHHHHHHHhC------------CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCc---------c
Confidence 889999988752 2235566788899999999999999999999999999999854221 1
Q ss_pred CCCCCCccEEEcccccccCC-cc-cEEEeCHHHHHHHHhhC----------------------CCCcccCCCCHHHHHHH
Q 040324 296 GVDTSDVDIMMGTFSKSFGS-YG-GYIAGSKELIQYLKYNC----------------------PAHLYATSISPPAAEQI 351 (488)
Q Consensus 296 ~v~p~~~di~~~t~sK~~g~-~G-g~i~~~~~~~~~~~~~~----------------------~~~~~~~~~~p~~~aa~ 351 (488)
++...++|+++.|++|++++ .| |+++.++++++.+.... ... ...+.+...++++
T Consensus 190 ~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~ 268 (396)
T 2ch1_A 190 YMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKR-YHHTVASNLIFAL 268 (396)
T ss_dssp CTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCC-CCCCCCHHHHHHH
T ss_pred chhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCC-CCCCCcHHHHHHH
Confidence 22223458888999998764 45 89999998888775421 011 1123566677777
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCC----CeEEEEeCCcchHHHHHHHHHHC-CceEE
Q 040324 352 ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDS----PVMPIMVYNPAKVSSFSRECLKQ-NVAIV 426 (488)
Q Consensus 352 ~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~ 426 (488)
.++|+.+.. +..++..++++++++++.+.|+++|+.+..+.++ .++++.+.......++.++|+++ ||.+.
T Consensus 269 ~~al~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~ 344 (396)
T 2ch1_A 269 REALAQIAE----EGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQ 344 (396)
T ss_dssp HHHHHHHHH----HCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCB
T ss_pred HHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEe
Confidence 788877521 1456788899999999999999888887665431 35666664444677899999986 99997
Q ss_pred eecCCCccCCCCeEEEee-cCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 040324 427 TVGFPATPLLLARARICI-SASHTKEDLIEALEVISRIGDLVGIKY 471 (488)
Q Consensus 427 ~~~~~~~~~~~~~iRi~~-~~~~t~edid~~l~~l~~~~~~~~~~~ 471 (488)
+.. .+...+.+||++ +..+|++|+++++++|+++++++...+
T Consensus 345 ~g~---~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~~~ 387 (396)
T 2ch1_A 345 GGL---GPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHPDY 387 (396)
T ss_dssp CCC---GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCc---cccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCccE
Confidence 521 122357899999 567799999999999999999886544
No 127
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.96 E-value=1.5e-26 Score=240.42 Aligned_cols=340 Identities=12% Similarity=0.067 Sum_probs=231.1
Q ss_pred CccchHHHHHHHHHcCC-CCCCcccCCCChhhHHHHHHHHHHHhC--------CCCeEEeCCcHHHHhhhhhccc-CCCc
Q 040324 117 DEYCTPRVIDSLKKYSH-STCSSRVDGGTLALHNELEECVARFVG--------KPAAIVFGMGYVTNSSILPVLM-GKGS 186 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~~~i~~~sGs~a~~~~~~~~~-~~~~ 186 (488)
++.+.+++.+++.+... ... .++......++++.++++++ .++++++++|++++..++.++. +++|
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~----~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd 183 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATG----AYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKD 183 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSS----SCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTE
T ss_pred CHHHHHHHHHHHHcCCCCcCC----CcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCC
Confidence 45677777777776421 221 12233333677777777663 2356666677777888888887 8999
Q ss_pred EEEEeCCCchHHHHHHHhcCCeEEEee-------CCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC-
Q 040324 187 LIISDSLNHNSIVNGARGSGATIRVFQ-------HNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK- 258 (488)
Q Consensus 187 ~Vl~~~~~h~~~~~~~~~~g~~v~~~~-------~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~- 258 (488)
.|+++.|+|+.+...++..|++++.++ ..|+++|++.+++...++ +..++++++ ...+++|.+.+
T Consensus 184 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~------~~~k~ivl~-~p~NPtG~~~s~ 256 (500)
T 3tcm_A 184 GILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRG------INVRALVVI-NPGNPTGQVLAE 256 (500)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTT------CEEEEEEEE-SSCTTTCCCCCH
T ss_pred EEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcC------CCceEEEEE-CCCCCCcccCCH
Confidence 999999999999999999999999988 348999999998753322 124455555 66888898765
Q ss_pred --hHHHHHHHHHcCcEEEEEccccccccCCCCCC--cc---hhcCCCCCC-ccEEEccccccc-CCcc---cEEEe---C
Q 040324 259 --LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG--VC---ELLGVDTSD-VDIMMGTFSKSF-GSYG---GYIAG---S 323 (488)
Q Consensus 259 --l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~--~~---~~~~v~p~~-~di~~~t~sK~~-g~~G---g~i~~---~ 323 (488)
+++|+++|++||+++|+||+|..+.++..... .. ..++...++ ..++++||||+| |.+| ||+++ +
T Consensus 257 ~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 336 (500)
T 3tcm_A 257 ENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFS 336 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCC
Confidence 77888889999999999999996555432221 11 122221122 247788999999 6666 99987 8
Q ss_pred HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHh-cc----CCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCC
Q 040324 324 KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVI-GE----DGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDND 397 (488)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~-~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 397 (488)
+++++.+..... ...+.+++.++++..+++... ++ ...++.++++++++++.+++.+.|+++ |+.+..+.+
T Consensus 337 ~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g 413 (500)
T 3tcm_A 337 APVREQIYKIAS---VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEG 413 (500)
T ss_dssp TTHHHHHHHHHH---TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCB
T ss_pred HHHHHHHHHHHh---cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCe
Confidence 889888876432 122356666655555553100 00 001145678889999999999999998 888877666
Q ss_pred CCeEEEEeCCcch------------HHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 398 SPVMPIMVYNPAK------------VSSFSRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 398 ~~~~~~~~~~~~~------------~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
+.++++.+..+.. ...++..++ ++||.+++......+.+.+++|+++. ++++++++++++|.+++
T Consensus 414 ~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~ 491 (500)
T 3tcm_A 414 AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFH 491 (500)
T ss_dssp TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHH
T ss_pred EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHH
Confidence 6655544443322 123344444 55999998443333345678999985 89999999999999999
Q ss_pred HHhCCccC
Q 040324 465 DLVGIKYF 472 (488)
Q Consensus 465 ~~~~~~~~ 472 (488)
+++..+|+
T Consensus 492 ~~~~~~~~ 499 (500)
T 3tcm_A 492 EAFMSEYR 499 (500)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 88766553
No 128
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.96 E-value=3e-27 Score=236.56 Aligned_cols=294 Identities=12% Similarity=0.036 Sum_probs=213.4
Q ss_pred hhhHHHHHHHHHHHhCCC---CeEEe-CCcHHHHhhhhhcccCCCcEEEEeCCCchHHH--HHHHhcCCeEEEeeCC---
Q 040324 145 LALHNELEECVARFVGKP---AAIVF-GMGYVTNSSILPVLMGKGSLIISDSLNHNSIV--NGARGSGATIRVFQHN--- 215 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~---~~i~~-~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~--~~~~~~g~~v~~~~~~--- 215 (488)
.+...++++.++++++.+ +.+++ ++|++++..++.++.++||.|++..+.|.+.. ..+...|.++..++.+
T Consensus 51 ~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 130 (376)
T 3f0h_A 51 SSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGK 130 (376)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCCC
Confidence 356688999999999875 45553 55688888888888899999988876444432 2356668888877753
Q ss_pred --CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcch
Q 040324 216 --TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCE 293 (488)
Q Consensus 216 --d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~ 293 (488)
|+++|++.+.. +..+|++.++.+++|.+.++++|+++|++||+++|+||+|+.+... ...+
T Consensus 131 ~~d~~~l~~~~~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~ 193 (376)
T 3f0h_A 131 KLTKEKLYEYDNQ-------------NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADP----FNMN 193 (376)
T ss_dssp CCCHHHHHTTTTS-------------CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSC----CCHH
T ss_pred CCCHHHHHHhhcc-------------CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcc----cccc
Confidence 77888765432 3345667778899999999999999999999999999999854321 0112
Q ss_pred hcCCCCCCccEEEcccccccC-Ccc-cEEEeCHHHHHHHHhhCCCC---------------cccCCCCHHHHHHHHHHHH
Q 040324 294 LLGVDTSDVDIMMGTFSKSFG-SYG-GYIAGSKELIQYLKYNCPAH---------------LYATSISPPAAEQIISAIQ 356 (488)
Q Consensus 294 ~~~v~p~~~di~~~t~sK~~g-~~G-g~i~~~~~~~~~~~~~~~~~---------------~~~~~~~p~~~aa~~a~L~ 356 (488)
.+ ++|+++.|++|+++ ++| |+++.++++++.+....... ....+.+...++++.++++
T Consensus 194 ~~-----~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 268 (376)
T 3f0h_A 194 EC-----GADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLK 268 (376)
T ss_dssp HH-----TCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH
T ss_pred cc-----CccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHH
Confidence 22 24788999999998 556 89999999998887532211 0112345555566777887
Q ss_pred HHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHC-CceEEeecCCCccC
Q 040324 357 VVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQ-NVAIVTVGFPATPL 435 (488)
Q Consensus 357 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~ 435 (488)
.+... ...++..++.+++.+++.+.|+++|+++..+..+..+...........++.+.|.++ ||.+.+. + .+.
T Consensus 269 ~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g-~--~~~ 342 (376)
T 3f0h_A 269 EIKKH---GGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPN-G--GEM 342 (376)
T ss_dssp HHHHT---THHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEEC-C--GGG
T ss_pred HHHHh---cCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecC-c--ccc
Confidence 76421 125678888899999999999998877765443443333333444677899999999 9999863 1 223
Q ss_pred CCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 436 LLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 436 ~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
..+++||+++..+|++|+++++++|++++++
T Consensus 343 ~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 343 KDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp TTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 4578999999899999999999999998864
No 129
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.96 E-value=1.7e-27 Score=235.78 Aligned_cols=329 Identities=20% Similarity=0.182 Sum_probs=223.1
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhh
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILP 179 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~ 179 (488)
+++|||+++.... .++.+.+++.++. ... ..++..+...+|++++|+++|.+.++++++|++++..++.
T Consensus 3 ~~~i~~~~~~~~~---p~~~~~~a~~~~~----~~~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~ 71 (347)
T 1jg8_A 3 HMMIDLRSDTVTK---PTEEMRKAMAQAE----VGD----DVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIM 71 (347)
T ss_dssp --CEECSCGGGCC---CCHHHHHHHHTCC----CCC----GGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred ceEEEeccccCCC---CCHHHHHHHhcCC----CCC----cccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHH
Confidence 5678987654421 2344444443221 110 1234556678999999999999889999999999988888
Q ss_pred cccCCCcEEEEeCCCchHHHH---HHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCC
Q 040324 180 VLMGKGSLIISDSLNHNSIVN---GARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYS 251 (488)
Q Consensus 180 ~~~~~~~~Vl~~~~~h~~~~~---~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s 251 (488)
++.++||.|+++.++|.++.. .+...|++++.+ .+ |+++|++.+++... + ..++.+|+++++++
T Consensus 72 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~------~-~~~~~~v~~~~~~n 143 (347)
T 1jg8_A 72 AHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNI------H-FPRTSLIAIENTHN 143 (347)
T ss_dssp HHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCT------T-SCCEEEEEEESSBT
T ss_pred HhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccc------c-ccCceEEEEecccc
Confidence 888999999999999987653 466678888887 43 78888877642100 0 01345677789999
Q ss_pred CC-CCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCccc-EEEeCHHH
Q 040324 252 ME-GELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGG-YIAGSKEL 326 (488)
Q Consensus 252 ~~-G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~Gg-~i~~~~~~ 326 (488)
++ |.+.+ +++|+++|++||+++|+||+|..+.++..+....... ...|.++.|+||++|++.| ++++++++
T Consensus 144 pt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~sK~l~~~~G~~~~~~~~~ 219 (347)
T 1jg8_A 144 RSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA----GYADSVMFCLSKGLCAPVGSVVVGDRDF 219 (347)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH----HTCSEEEEESSSTTCCSSCEEEEECHHH
T ss_pred ccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhc----ccccEEEEecccccCCCceEEEEcCHHH
Confidence 88 98876 5789999999999999999986433222122111111 1236667799999986444 67789888
Q ss_pred HHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeec-CCCCCCeEEEEe
Q 040324 327 IQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL-GDNDSPVMPIMV 405 (488)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~ 405 (488)
++.+......+..+...++..++++..+|+... +. .++..++.+++.+.|++.|+.+. .+..+.++++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~----~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 290 (347)
T 1jg8_A 220 IERARKARKMLGGGMRQAGVLAAAGIIALTKMV-----DR----LKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRT 290 (347)
T ss_dssp HHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-----TT----HHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEEC
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-----HH----HHHHHHHHHHHHHHHHhcCceeccCCCcceEEEEEc
Confidence 877654322111122245566666666766531 11 23334567888888887777642 234567777776
Q ss_pred CC-cchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 406 YN-PAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 406 ~~-~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
.. .....++.++|.++||.+.+.+ .+.+|++++..+|++|+++++++|+++++++
T Consensus 291 ~~~~~~~~~~~~~l~~~gi~v~~~~-------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 291 DNLKVNAHGFIEALRNSGVLANAVS-------DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp TTSSSCHHHHHHHHHHHTEECEEEE-------TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCEEecCC-------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 53 3456789999999999998643 3689999988899999999999999988654
No 130
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.96 E-value=1e-27 Score=238.07 Aligned_cols=332 Identities=14% Similarity=0.115 Sum_probs=229.9
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP--AAIVFGMGYVTNSS 176 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~ 176 (488)
...+++|.+ ++.+ +.+|.+.+++.+++..|... .|..+..+++++.+++++|.+ .++++++|++++..
T Consensus 12 ~p~~i~l~~-~~~~--~~~~~v~~a~~~~~~~~~~~-------~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~ 81 (359)
T 1svv_A 12 KPKPYSFVN-DYSV--GMHPKILDLMARDNMTQHAG-------YGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLI 81 (359)
T ss_dssp ---CEECSC-SCSS--CCCHHHHHHHHHHTTCCCCS-------TTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHH
T ss_pred CCeeEEecC-CCcC--CCCHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHH
Confidence 455788876 4344 45788999999888754322 256778899999999999864 36777788889988
Q ss_pred hhhcccCCCcEEEEeCCCchHHHH--HHHhcCCeEEEeeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcC
Q 040324 177 ILPVLMGKGSLIISDSLNHNSIVN--GARGSGATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY 250 (488)
Q Consensus 177 ~~~~~~~~~~~Vl~~~~~h~~~~~--~~~~~g~~v~~~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~ 250 (488)
++..+.++|+.|+++.+.|+++.. .++..|.+++.++.+ |+++|++.+++.... +++ +..+|+++++
T Consensus 82 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~-----~~~-~~~~v~~~~~- 154 (359)
T 1svv_A 82 ACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSE-----HMV-IPKLVYISNT- 154 (359)
T ss_dssp HHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCST-----TSC-EEEEEEEESS-
T ss_pred HHHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhc-----cCC-CceEEEEEcC-
Confidence 888888999999999999999877 377789999999876 589999988762000 011 2445555566
Q ss_pred CCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cEEEeCHHH
Q 040324 251 SMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYIAGSKEL 326 (488)
Q Consensus 251 s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i~~~~~~ 326 (488)
+++|.+.+ +++|+++|++||++||+||+|....+|..+... ...++. ...|++..+++|..+..| |+++.++++
T Consensus 155 ~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~-~~~d~~~~s~~K~g~~~~~g~l~~~~~~ 232 (359)
T 1svv_A 155 TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL-TLADIA-RLTDMFYIGATKAGGMFGEALIILNDAL 232 (359)
T ss_dssp CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC-CHHHHH-HHCSEEEEECTTTTCSSCEEEEECSGGG
T ss_pred CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcch-hhhhhh-hcCCEEEEecccCCCCCceEEEEEcccH
Confidence 57898888 999999999999999999999421223332211 111100 123788889999865556 889989888
Q ss_pred HHHHHhhC--CCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEE
Q 040324 327 IQYLKYNC--PAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIM 404 (488)
Q Consensus 327 ~~~~~~~~--~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 404 (488)
++.+.... .+.+++ .++...++..+ .+. ....++..++++++.+++.+.|+..|+++..+.+++++++.
T Consensus 233 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~l~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 303 (359)
T 1svv_A 233 KPNARHLIKQRGALMA--KGWLLGIQFEV---LMK----DNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPI 303 (359)
T ss_dssp CTTHHHHHHHTTCCCT--TTHHHHHHHHH---HTS----TTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBE
T ss_pred HHHHHHHHhcCCcccc--cchhhHHHHHH---HHh----hhhHHHHHHHHHHHHHHHHHHhccCCeEEccCCccceEEEE
Confidence 76665431 222222 23333333222 232 12446788899999999999996668887766666665544
Q ss_pred eCCcchHHHHHHHHHHC-CceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 405 VYNPAKVSSFSRECLKQ-NVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 405 ~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+. .++.++|+++ ||.+.. ..+.+.+++||+++..+|++|+++++++|+++++++
T Consensus 304 ~~-----~~~~~~l~~~~gi~v~~----~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 304 LE-----NTMIAELNNDFDMYTVE----PLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp EE-----HHHHHHHTTTEECEEEE----EETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred cC-----HHHHHHHHHhcCEEEEe----cccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 42 4788999999 999842 112335789999988999999999999999887653
No 131
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.96 E-value=7.5e-28 Score=238.87 Aligned_cols=332 Identities=14% Similarity=0.098 Sum_probs=227.1
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCC-eEEeCCcHHHHhhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPA-AIVFGMGYVTNSSI 177 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-~i~~~sGs~a~~~~ 177 (488)
...+|||+++++ .+.+|.+.+++.+++.. + ...++..+...++++.+++++|.+. ++++++|++++..+
T Consensus 6 ~~~~id~~~~~~---~~~~~~v~~a~~~~~~~----~---~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~a 75 (356)
T 1v72_A 6 RPPALGFSSDNI---AGASPEVAQALVKHSSG----Q---AGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALC 75 (356)
T ss_dssp CCCCCBCSCGGG---CCCCHHHHHHHHHTTSS----C---CCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHH
T ss_pred CCceEeeccCCc---cCCCHHHHHHHHhhccC----c---ccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHH
Confidence 356899987654 23568888888877521 1 1233556777999999999999655 57778999999888
Q ss_pred hhcccCCCcEEEEeCCCchHHHHH--HHhc--CCeEEEeeCC----CHHHHHH-HHHHHHhcCCCCCCCCCceEEEEEcC
Q 040324 178 LPVLMGKGSLIISDSLNHNSIVNG--ARGS--GATIRVFQHN----TPSHLEE-VLREQIAEGQPRTRRPWKKIMVVVEG 248 (488)
Q Consensus 178 ~~~~~~~~~~Vl~~~~~h~~~~~~--~~~~--g~~v~~~~~~----d~~~Le~-~l~~~~~~~~p~~~~~~~~~~vi~e~ 248 (488)
+.++.++++.|+++.++|+++... +... |.+++.++.+ |+++|++ .+++.... +++ ++.+|++++
T Consensus 76 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~-----~~~-~~~~v~~~~ 149 (356)
T 1v72_A 76 LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDV-----HTT-QPACVSITQ 149 (356)
T ss_dssp HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCT-----TSC-EEEEEEEES
T ss_pred HHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhcchhh-----ccC-CceEEEEEc
Confidence 888889999999999999987765 6666 8999888865 7888887 76531000 011 345566666
Q ss_pred cCCCCCCCC---ChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCC-cc-cEEEeC
Q 040324 249 IYSMEGELC---KLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS-YG-GYIAGS 323 (488)
Q Consensus 249 v~s~~G~~~---~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~-~G-g~i~~~ 323 (488)
.. ++|.+. ++++|+++|++||++||+||+|..+.....|... ..+++. .+.|+++.|++|+ |. .| |+++++
T Consensus 150 ~~-~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~~-~~~d~~~~s~sK~-g~~~G~g~~~~~ 225 (356)
T 1v72_A 150 AT-EVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTWK-AGVDALSFGATKN-GVLAAEAIVLFN 225 (356)
T ss_dssp SC-TTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTGG-GTCCEEEECCGGG-TCSSCEEEEESS
T ss_pred CC-CCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhhh-hcCCEEEEecccC-CCcCccEEEEEC
Confidence 55 488844 5899999999999999999999743221111111 111111 1347778899999 54 34 588889
Q ss_pred HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCeEE
Q 040324 324 KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVMP 402 (488)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 402 (488)
+++++.+...... .+. .+.....++.++++.+.+ +...++.+++.++.+++++.|+++ |+++..+..+++++
T Consensus 226 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 298 (356)
T 1v72_A 226 TSLATEMSYRRKR--AGH-LSSKMRFLSAQIDAYLTD----DLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILF 298 (356)
T ss_dssp GGGHHHHHHHHHH--TTC-CCSSTHHHHHHHHHHTST----THHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEE
T ss_pred HHHHhhHHHHhhc--cCc-hhhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEE
Confidence 8888776543110 010 111112223344555421 123456778889999999999885 88876666677777
Q ss_pred EEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 403 IMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 403 ~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+.+. .++.++|.++||.+.+..|+ .+++|++++..+|++|+++++++|++++++.
T Consensus 299 ~~~~-----~~~~~~l~~~gi~v~~g~~~-----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 299 CRLD-----SAMIDALLKAGFGFYHDRWG-----PNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp EEEC-----HHHHHHHHHTTCBCBCSSSS-----TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred EEcC-----HHHHHHHHhcCeEEeccccC-----CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 6653 27889999999999852221 4789999999999999999999999886654
No 132
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.96 E-value=2.1e-27 Score=240.18 Aligned_cols=336 Identities=17% Similarity=0.173 Sum_probs=237.1
Q ss_pred ceeEEecc-ccccCCCCCCccchHHHHHHHHH-cCCCCCCcccCCCChhhHHHHH----HHHHHHhCCCCe-EEeCCcHH
Q 040324 100 SRCLNLGS-YNYLGFAAADEYCTPRVIDSLKK-YSHSTCSSRVDGGTLALHNELE----ECVARFVGKPAA-IVFGMGYV 172 (488)
Q Consensus 100 ~~~ld~~s-~~~lg~~~~~~~v~~a~~~~l~~-~~~~~~~~~~~~g~~~~~~~l~----~~la~~~g~~~~-i~~~sGs~ 172 (488)
+++||+.+ .+++ +|.+.+++.+++++ +...++.+....|.. ....++ +.+++++|.+.. +++++|++
T Consensus 23 ~~~i~~~~~~~~~-----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~-~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~ 96 (407)
T 2dkj_A 23 REGLELIASENFV-----SKQVREAVGSVLTNKYAEGYPGARYYGGCE-VIDRVESLAIERAKALFGAAWANVQPHSGSQ 96 (407)
T ss_dssp HTSEECCTTCCCC-----CHHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHHHHHHTCSEEECCCSSHHH
T ss_pred hcceeeccCCCCC-----CHHHHHHHHhhhhcCcccCCCcccccCCch-HHHHHHHHHHHHHHHHhCCCcceEEecchHH
Confidence 56788853 3333 68899999998865 333343333332332 222333 589999998755 77899999
Q ss_pred HHhhhhhcccCCCcEEEEeCCCchHHH---HHHHhcCC--eEEEee------CCCHHHHHHHHHHHHhcCCCCCCCCCce
Q 040324 173 TNSSILPVLMGKGSLIISDSLNHNSIV---NGARGSGA--TIRVFQ------HNTPSHLEEVLREQIAEGQPRTRRPWKK 241 (488)
Q Consensus 173 a~~~~~~~~~~~~~~Vl~~~~~h~~~~---~~~~~~g~--~v~~~~------~~d~~~Le~~l~~~~~~~~p~~~~~~~~ 241 (488)
++..++.++.++|+.|+++.+.|+++. ..++..|. ..+.++ ..|+++|++.+++. ..+
T Consensus 97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----------~~~ 165 (407)
T 2dkj_A 97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEH-----------RPK 165 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHH-----------CCS
T ss_pred HHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhc-----------CCe
Confidence 888888888899999999999998873 33333344 444443 13789999988742 145
Q ss_pred EEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCC-cccEE
Q 040324 242 IMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS-YGGYI 320 (488)
Q Consensus 242 ~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~-~Gg~i 320 (488)
+++++++.++ .+.++++|+++|++||++||+||+|+.|.. ..|... . .. ...|+++.|++|++++ .||++
T Consensus 166 ~v~~~~p~~~---~~~~l~~i~~l~~~~~~~li~Dea~~~g~~-~~~~~~-~--~~--~~~di~~~s~sK~l~g~~~G~~ 236 (407)
T 2dkj_A 166 VIVAGASAYP---RFWDFKAFREIADEVGAYLVVDMAHFAGLV-AAGLHP-N--PL--PYAHVVTSTTHKTLRGPRGGLI 236 (407)
T ss_dssp EEEECCSSCC---SCCCHHHHHHHHHHHTCEEEEECTTTHHHH-HTTCSC-C--CT--TTCSEEEEESSGGGCCCSCEEE
T ss_pred EEEEeccccC---CCCCHHHHHHHHHHcCCEEEEEcccccccc-ccCccC-C--cc--ccccEEEEeccccCCCCCceEE
Confidence 5555466653 667899999999999999999999985332 222211 0 11 1258999999999963 55999
Q ss_pred EeC-HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCC-CCC
Q 040324 321 AGS-KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD-NDS 398 (488)
Q Consensus 321 ~~~-~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~ 398 (488)
+++ +++++.+......+.. .+.++..++++.++++.+.. +..+++.++++++.+++.+.|++.|+++..+ ..+
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~a~~~al~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 311 (407)
T 2dkj_A 237 LSNDPELGKRIDKLIFPGIQ-GGPLEHVIAGKAVAFFEALQ----PEFKEYSRLVVENAKRLAEELARRGYRIVTGGTDN 311 (407)
T ss_dssp EESCHHHHHHHHHHHTTTTC-SSCCHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS
T ss_pred EECCHHHHHHHHhhhccccc-CCCcHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHhCCceeecCCCCc
Confidence 999 8999888765433222 23667667677788877521 2557889999999999999999999888753 456
Q ss_pred CeEEEEeCCc-chHHHHHHHHHHCCceEEeecCCC---ccCCCCeEEEeecC----CCCHHHHHHHHHHHHHHHHH
Q 040324 399 PVMPIMVYNP-AKVSSFSRECLKQNVAIVTVGFPA---TPLLLARARICISA----SHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 399 ~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~~~~---~~~~~~~iRi~~~~----~~t~edid~~l~~l~~~~~~ 466 (488)
+++++.+... ....++.+.|.++||.+.+...+. .+...+.+|++++. .+|++|+++++++|++++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 312 HLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp SEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred eEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 7888777532 256688899999999998743221 12234689999865 38999999999999999877
No 133
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=3.1e-26 Score=225.58 Aligned_cols=310 Identities=14% Similarity=0.144 Sum_probs=228.4
Q ss_pred cceeEEeccc-cccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC-CeEEeCCcHHH-Hh
Q 040324 99 VSRCLNLGSY-NYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP-AAIVFGMGYVT-NS 175 (488)
Q Consensus 99 g~~~ld~~s~-~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-~~i~~~sGs~a-~~ 175 (488)
.+++|||++| |+++. +|.+.+++.++++... .+ ..+...++++.+|++++.+ +.+++++|+.+ +.
T Consensus 15 ~~~~i~l~~n~~~~~~---~~~v~~a~~~~~~~~~-~y--------~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~ 82 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAV---EPRVQAAIAAAAARIN-RY--------PFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFD 82 (337)
T ss_dssp CCCCEECSSCCCCSCC---CHHHHHHHHHHGGGTT-SC--------CTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred CCCceEeeCCCCCCCC---CHHHHHHHHHhhhhhc-cC--------CCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHH
Confidence 5788999877 55543 4788888888776531 11 2345689999999999975 46666666654 45
Q ss_pred hhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcC
Q 040324 176 SILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY 250 (488)
Q Consensus 176 ~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~ 250 (488)
.++..+ +++.|+++.++|.++...++..|.+++.++.+ |+++|++.. ++.++++..++
T Consensus 83 ~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~---------------~~~~v~i~~p~ 145 (337)
T 3p1t_A 83 RISAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVS---------------RDDCVVLANPS 145 (337)
T ss_dssp HHHHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTCC---------------TTEEEEEESSC
T ss_pred HHHHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhhc---------------CCCEEEEeCCC
Confidence 566665 89999999999999999999999999998854 667665431 23466667778
Q ss_pred CCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHH
Q 040324 251 SMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELI 327 (488)
Q Consensus 251 s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~ 327 (488)
+++|.+.+++++.++|+++++ +|+||+|+ .++..+... ....+.+++++|+||.+|.+| ||++++++++
T Consensus 146 nptG~~~~~~~l~~l~~~~~~-~ivDea~~--~~~~~~~~~-----~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~ 217 (337)
T 3p1t_A 146 NPTGQALSAGELDQLRQRAGK-LLIDETYV--DYSSFRARG-----LAYGENELVFRSFSKSYGLAGLRLGALFGPSELI 217 (337)
T ss_dssp TTTCCCCCHHHHHHHHHHCSE-EEEECTTG--GGSSCSSSC-----CCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHH
T ss_pred CCCCCCCCHHHHHHHHHhCCc-EEEECCCh--hhccccccc-----cccCCCEEEEeeCchhccCcchheEEEEeCHHHH
Confidence 999999999999999999997 55699998 555433211 112345789999999998666 9999999999
Q ss_pred HHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCC
Q 040324 328 QYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYN 407 (488)
Q Consensus 328 ~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 407 (488)
+.+..... .+ +.+++.++++.++|+.. +..++.++++.++.+++.+.|++.|+.+..+ .+.++++....
T Consensus 218 ~~l~~~~~--~~--~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~ 286 (337)
T 3p1t_A 218 AAMKRKQW--FC--NVGTLDLHALEAALDND------RAREAHIAKTLAQRRRVADALRGLGYRVASS-EANFVLVENAA 286 (337)
T ss_dssp HHHHTTSC--TT--CSCHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC-SSSEEEEECTT
T ss_pred HHHHhhcC--CC--CCCHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHCcCEECCC-CCeEEEEEcCC
Confidence 98876533 22 36777777776666532 1345677778888899999999998877644 45666665543
Q ss_pred cchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHH
Q 040324 408 PAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 408 ~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~ 465 (488)
..++.+.|.++||.+.+...... .+++||+++ +++|+++++++|+++.+
T Consensus 287 ---~~~~~~~l~~~gi~v~~g~~~~~---~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 287 ---GERTLRFLRERGIQVKDAGQFGL---HHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp ---THHHHHHHHHTTEECEEGGGGTC---CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHCCeEEEECccCCC---CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 24677788889999997432221 479999984 89999999999988653
No 134
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=1.9e-27 Score=235.36 Aligned_cols=292 Identities=17% Similarity=0.149 Sum_probs=214.6
Q ss_pred hhhHHHHHHHHHHHhCCC---CeEE-eCCcHHHHhhhhhcccCCCcEEEEeCCCchHH--HHHHHhcCCeEEEeeC----
Q 040324 145 LALHNELEECVARFVGKP---AAIV-FGMGYVTNSSILPVLMGKGSLIISDSLNHNSI--VNGARGSGATIRVFQH---- 214 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~---~~i~-~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~--~~~~~~~g~~v~~~~~---- 214 (488)
.+...++++.+++++|.+ +.++ +++|++++..++.++.+ +.|++..+.|+++ ...++..|.+++.++.
T Consensus 32 ~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 109 (353)
T 2yrr_A 32 LRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGE 109 (353)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCCCC
Confidence 355789999999999973 4444 45667788777777766 6788888788775 3445677999988885
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcch
Q 040324 215 -NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCE 293 (488)
Q Consensus 215 -~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~ 293 (488)
.|+++|++.+++. +..+|+++++++++|.+.++++|.++|++||+++|+||+|++|... ... .
T Consensus 110 ~~d~~~l~~~l~~~------------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~---~~~-~ 173 (353)
T 2yrr_A 110 PVDPEAVARALKRR------------RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLP---FSM-R 173 (353)
T ss_dssp CCCHHHHHHHHHHS------------CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC---CCH-H
T ss_pred CCCHHHHHHHHHhC------------CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccccc---ccc-c
Confidence 3789999888751 2235667889999999999999999999999999999999744321 111 1
Q ss_pred hcCCCCCCccEEEcccccccC-Ccc-cEEEeCHHHHHHHHh-------------hCCCCcccCCCCHHHHHHHHHHHHHH
Q 040324 294 LLGVDTSDVDIMMGTFSKSFG-SYG-GYIAGSKELIQYLKY-------------NCPAHLYATSISPPAAEQIISAIQVV 358 (488)
Q Consensus 294 ~~~v~p~~~di~~~t~sK~~g-~~G-g~i~~~~~~~~~~~~-------------~~~~~~~~~~~~p~~~aa~~a~L~~i 358 (488)
.+ +.|+++.|++|+++ ++| |++++++++++.++. ......+..+.++..++++.++++.+
T Consensus 174 ~~-----~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 248 (353)
T 2yrr_A 174 AM-----GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLV 248 (353)
T ss_dssp HH-----TCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHH
T ss_pred cc-----CceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 12 23889999999775 456 999999998876641 00011222346777777777888876
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCC--CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCC
Q 040324 359 IGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDN--DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLL 436 (488)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~ 436 (488)
... ..++.+++++++.+++.+.|+++|+++..+. .+.++++.+.......++.+.|.++||.+.+... +..
T Consensus 249 ~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~---~~~ 321 (353)
T 2yrr_A 249 LEE----GVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIG---PTR 321 (353)
T ss_dssp HHH----CHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTCCHHHHHHHHHHTTEECEECCG---GGT
T ss_pred HHh----hHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCcc---ccC
Confidence 321 2567888999999999999999888877643 3456667665444577899999999999986321 123
Q ss_pred CCeEEEeecCCCCHHHHH-HHHHHHHHHHHH
Q 040324 437 LARARICISASHTKEDLI-EALEVISRIGDL 466 (488)
Q Consensus 437 ~~~iRi~~~~~~t~edid-~~l~~l~~~~~~ 466 (488)
.+.+|++++..+|++|++ +++++|+++++.
T Consensus 322 ~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 322 GQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp TTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 468999998888999999 999999988753
No 135
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.96 E-value=2.7e-27 Score=240.38 Aligned_cols=326 Identities=15% Similarity=0.177 Sum_probs=213.3
Q ss_pred CccchHHHHHHHH-HcCCCCCCcccCCCC---hhhHHHHHHHHHHHhCCCCe-EEeCCcHHHHhhhhhcccCCCcEEEEe
Q 040324 117 DEYCTPRVIDSLK-KYSHSTCSSRVDGGT---LALHNELEECVARFVGKPAA-IVFGMGYVTNSSILPVLMGKGSLIISD 191 (488)
Q Consensus 117 ~~~v~~a~~~~l~-~~~~~~~~~~~~~g~---~~~~~~l~~~la~~~g~~~~-i~~~sGs~a~~~~~~~~~~~~~~Vl~~ 191 (488)
||.+.+|+.+++. .++.++.+++...+. ....+.+++.++++++.+.. +++++|++++..++.++.++|+.|+++
T Consensus 43 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~ 122 (420)
T 3gbx_A 43 SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGM 122 (420)
T ss_dssp CHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEec
Confidence 6899999999884 443344333322221 12234455788999998754 558999999988889999999999999
Q ss_pred CCCchHHH-HH--HHhcC--CeEEEeeC-----CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHH
Q 040324 192 SLNHNSIV-NG--ARGSG--ATIRVFQH-----NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPE 261 (488)
Q Consensus 192 ~~~h~~~~-~~--~~~~g--~~v~~~~~-----~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~ 261 (488)
.++|+++. .+ ....| ...+.++. .|+++|++++++. ..++++++.+.+ |...++++
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----------~~~~v~~~~~~~---~~~~~l~~ 188 (420)
T 3gbx_A 123 NLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEH-----------KPKMIIGGFSAY---SGVVDWAK 188 (420)
T ss_dssp EEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHH-----------CCSEEEECCTTC---CSCCCHHH
T ss_pred chhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhc-----------CCeEEEEecCcc---CCccCHHH
Confidence 99998843 12 22223 23334332 4899999999763 134454445444 45778999
Q ss_pred HHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccC-CcccEEEeCH---HHHHHHHhhCCCC
Q 040324 262 IITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG-SYGGYIAGSK---ELIQYLKYNCPAH 337 (488)
Q Consensus 262 l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g-~~Gg~i~~~~---~~~~~~~~~~~~~ 337 (488)
|+++|++||++||+||+|+.|..+ ++... .. ....|+++.|+||+++ ..||++++++ ++.+.+.......
T Consensus 189 l~~l~~~~~~~li~De~~~~~~~~-~~~~~----~~-~~~~di~~~s~sK~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~ 262 (420)
T 3gbx_A 189 MREIADSIGAYLFVDMAHVAGLIA-AGVYP----NP-VPHAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAVFPS 262 (420)
T ss_dssp HHHHHHHTTCEEEEECTTTHHHHH-TTSSC----CS-TTTSSEEEEESSGGGCSCSCEEEEESSCCHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCEEEEECCcchhcee-cccCC----cc-cccCCEEEeecccCCCCCCceEEEEcCCcHHHHHHhhhhcCCC
Confidence 999999999999999999754432 22211 11 1235899999999995 4579999987 8888777654432
Q ss_pred cccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCC-CCCCeEEEEeCCc-chHHHHH
Q 040324 338 LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD-NDSPVMPIMVYNP-AKVSSFS 415 (488)
Q Consensus 338 ~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 415 (488)
..+. .+...++++..++..+. .++.+++++++.++.+++++.|++.|+++..+ ..++++++.+... .....+.
T Consensus 263 ~~~~-~~~~~~~a~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (420)
T 3gbx_A 263 AQGG-PLMHVIAGKAVALKEAM----EPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEAD 337 (420)
T ss_dssp --CC-CCHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHH
T ss_pred CCCC-cchhHHHHHHHHHHHHH----hHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCCeEEEEEcCCCCCCHHHHH
Confidence 3322 33333333333444331 22457788999999999999999999988653 3567777776542 2456777
Q ss_pred HHHHHCCceEEeecCCC---ccCCCCeEEEeecCC----CCHHHHHHHHHHHHHHHHHh
Q 040324 416 RECLKQNVAIVTVGFPA---TPLLLARARICISAS----HTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 416 ~~l~~~Gi~v~~~~~~~---~~~~~~~iRi~~~~~----~t~edid~~l~~l~~~~~~~ 467 (488)
+.|.++||.+.+.++|. .+.+.+.+||+++.. .+++|+++++++|++++++.
T Consensus 338 ~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 338 AALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp HHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 88888899999744432 233446699998754 56899999999999998764
No 136
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=2.7e-27 Score=239.03 Aligned_cols=286 Identities=15% Similarity=0.149 Sum_probs=213.1
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHH----HhcCCeEEEeeCCCHHH
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGA----RGSGATIRVFQHNTPSH 219 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~----~~~g~~v~~~~~~d~~~ 219 (488)
..+...++++.+++++|.++++++++|++++..++.++..+++.|+++.+.|+++...+ ...|.+++.++.+|+++
T Consensus 62 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 141 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEE 141 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHH
Confidence 56778999999999999989999999999998888888899999999999999988776 77899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT 299 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p 299 (488)
+++.+++ ++.+|+++++.+++|.+.++++|+++|++||+++|+||+|+.+.++. ... +
T Consensus 142 l~~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~----~~~-~---- 199 (398)
T 2rfv_A 142 IRAAMRP-------------ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ----PLQ-L---- 199 (398)
T ss_dssp HHHHCCT-------------TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC----GGG-G----
T ss_pred HHHhcCC-------------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC----chh-h----
Confidence 9887753 35677788999999999999999999999999999999998655431 111 1
Q ss_pred CCccEEEcccccccCCc----ccEEEeCHHHHH-HHHhhCCCCcc-cCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 040324 300 SDVDIMMGTFSKSFGSY----GGYIAGSKELIQ-YLKYNCPAHLY-ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLAR 373 (488)
Q Consensus 300 ~~~di~~~t~sK~~g~~----Gg~i~~~~~~~~-~~~~~~~~~~~-~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~ 373 (488)
++|+++.|++|+++++ ||++++++++++ .++..... + +.+.++..++++.++|+.+ ....++
T Consensus 200 -~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~---------~~~~~~ 267 (398)
T 2rfv_A 200 -GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD--ITGGCMSPFNAWLTLRGVKTL---------GIRMER 267 (398)
T ss_dssp -TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHH--TTCCCCCHHHHHHHHHHHTTH---------HHHHHH
T ss_pred -CCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHh--CCCCCCCHHHHHHHHhhhhhH---------HHHHHH
Confidence 3489999999999754 499999998876 55543222 2 3348888888888887643 445666
Q ss_pred HHHHHHHHHHHHHhCC---------------CeecC---CCCCCeEEEEeCCc-chHHHHHHHHHHCCceEEeecC----
Q 040324 374 IRENSNFFRSKLQKMG---------------FEVLG---DNDSPVMPIMVYNP-AKVSSFSRECLKQNVAIVTVGF---- 430 (488)
Q Consensus 374 ~~~~~~~l~~~L~~~g---------------~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~~---- 430 (488)
+.++.+.+.+.|++.+ +.+.. ...++++++.+... .....+.+.+...|+.+.+.+.
T Consensus 268 ~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li 347 (398)
T 2rfv_A 268 HCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLI 347 (398)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCSSSSCEE
T ss_pred HHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCCCcceee
Confidence 7778888888887653 11111 12467777777532 2333444444444655543211
Q ss_pred --CC--------------ccCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 431 --PA--------------TPLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 431 --~~--------------~~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
+. .....+.+||+++..++++++++++++|+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 348 QHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp ECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 10 0012589999999999999999999988764
No 137
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.95 E-value=7.1e-27 Score=237.81 Aligned_cols=310 Identities=12% Similarity=0.052 Sum_probs=217.7
Q ss_pred ChhhHHHHHHHHHHHhCCC-CeEEeCCcHH-HHh--hhhhcccC--C---------CcEEEEeCCCchHHHHHHHhcCCe
Q 040324 144 TLALHNELEECVARFVGKP-AAIVFGMGYV-TNS--SILPVLMG--K---------GSLIISDSLNHNSIVNGARGSGAT 208 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~-~~i~~~sGs~-a~~--~~~~~~~~--~---------~~~Vl~~~~~h~~~~~~~~~~g~~ 208 (488)
......+|++.+|++++.+ +.+++++|+. ++. .++.++.. + ++.|+++.|+|..+...++..|.+
T Consensus 68 ~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 147 (423)
T 3ez1_A 68 GVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFE 147 (423)
T ss_dssp CTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCE
T ss_pred CCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCE
Confidence 3344589999999999864 4555555544 554 67777766 6 599999999999999999999999
Q ss_pred EEEeeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChH---HHHHHH-HHcCcEEEEEcccc
Q 040324 209 IRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLP---EIITIC-KRYKAYTYLDEAHS 280 (488)
Q Consensus 209 v~~~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~---~l~~l~-~~~g~~li~DE~~s 280 (488)
++.++.+ |+++|++.+++. +..++++++...++++|.+.+.+ +|+++| ++||++||+||+|+
T Consensus 148 ~~~v~~~~~g~d~~~l~~~l~~~----------~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~ 217 (423)
T 3ez1_A 148 LLTVDMQSDGPDVDAVERLAGTD----------PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYR 217 (423)
T ss_dssp EEEEEEETTEECHHHHHHHHHSC----------TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTS
T ss_pred EEeccCCCCCCCHHHHHHHHhhC----------CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcc
Confidence 9888764 889999988621 12444444557888999988765 888888 99999999999998
Q ss_pred ccccCC-CCCCcchhcCC----CCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHH
Q 040324 281 IGAVGK-TGRGVCELLGV----DTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQII 352 (488)
Q Consensus 281 ~g~~g~-~g~~~~~~~~v----~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~ 352 (488)
...+.. .+......+.+ +..+.+++++||||++ .+| ||+++++++++.+........++ .+++.+.++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~ 294 (423)
T 3ez1_A 218 VHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKIT-FAGAGLGFVASSEDNIRWLSKYLGAQSIG--PNKVEQARHV 294 (423)
T ss_dssp SCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTS-CSSSSCEEEEECHHHHHHHHHHHHHSCSC--CCHHHHHHHH
T ss_pred hhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhc-cCCcceEEEEeCHHHHHHHHHHHhhhccC--CCHHHHHHHH
Confidence 544443 11112222221 1245679999999974 334 99999999999887654433333 7777777777
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh----CC--CeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEE
Q 040324 353 SAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQK----MG--FEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIV 426 (488)
Q Consensus 353 a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 426 (488)
+.|+.+. +...+...+.++.++++.+.+.+.|.+ +| +.+..+.++.++++.+... ....+.+.|.++||.+.
T Consensus 295 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-~~~~~~~~l~~~gv~v~ 372 (423)
T 3ez1_A 295 KFLTEYP-GGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-VADRVVKLAEAAGVSLT 372 (423)
T ss_dssp HHHHHST-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-CHHHHHHHHHHTTEECC
T ss_pred HHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-cHHHHHHHHHHCCcEEe
Confidence 7766410 000113345555556666666555544 55 6666666778888887654 56788888999999998
Q ss_pred eecCCCc---cCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCC
Q 040324 427 TVGFPAT---PLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469 (488)
Q Consensus 427 ~~~~~~~---~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~ 469 (488)
+.+..+. +.+.+++||+++.. |++++++++++|.++++++..
T Consensus 373 ~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 373 PAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp CTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 7332111 23468999999644 999999999999999987643
No 138
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=2.3e-26 Score=233.90 Aligned_cols=337 Identities=16% Similarity=0.189 Sum_probs=216.1
Q ss_pred eeEEec-cccccCCCCCCccchHHHHHHHH-HcCCCCCCcccCCCCh--hhHHHHH-HHHHHHhCCCCe-EEeCCcHHHH
Q 040324 101 RCLNLG-SYNYLGFAAADEYCTPRVIDSLK-KYSHSTCSSRVDGGTL--ALHNELE-ECVARFVGKPAA-IVFGMGYVTN 174 (488)
Q Consensus 101 ~~ld~~-s~~~lg~~~~~~~v~~a~~~~l~-~~~~~~~~~~~~~g~~--~~~~~l~-~~la~~~g~~~~-i~~~sGs~a~ 174 (488)
+.+++. +.+++ ||.+.+++.+++. .++.++..++...+.. +...++. +.++++++.+.. +++++|++++
T Consensus 33 ~~i~l~~~~~~~-----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~ 107 (425)
T 3ecd_A 33 SQVELIASENIV-----SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQAN 107 (425)
T ss_dssp HSEECCTTCCCC-----CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred cceeeecccCCC-----CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHH
Confidence 356664 33332 6899999998884 4444443333222221 2334444 778899998876 4588999999
Q ss_pred hhhhhcccCCCcEEEEeCCCchH-HHHHHH--hcCC--eEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 175 SSILPVLMGKGSLIISDSLNHNS-IVNGAR--GSGA--TIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 175 ~~~~~~~~~~~~~Vl~~~~~h~~-~~~~~~--~~g~--~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
..++.++.++||.|+++.+.|++ ...+.. ..|. .++.++.+ |+++|++.+.+. ..+++
T Consensus 108 ~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----------~~~~v 176 (425)
T 3ecd_A 108 GAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQH-----------KPSLI 176 (425)
T ss_dssp HHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHH-----------CCSEE
T ss_pred HHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhc-----------CCcEE
Confidence 88888889999999999999988 222322 3344 44455543 899999998752 14455
Q ss_pred EEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCC-cccEEEe
Q 040324 244 VVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS-YGGYIAG 322 (488)
Q Consensus 244 vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~-~Gg~i~~ 322 (488)
+++.+.+ |...++++|+++|++||++||+||+|+.|.+. .+... +.. ...|++++|+||++++ .||++++
T Consensus 177 ~~~~~~~---~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~-~~~~~----~~~-~~~di~~~s~sK~l~g~~~g~~~~ 247 (425)
T 3ecd_A 177 IAGFSAY---PRKLDFARFRAIADSVGAKLMVDMAHIAGVIA-AGRHA----NPV-EHAHVVTSTTHKTLRGPRGGFVLT 247 (425)
T ss_dssp EEECSCC---CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHH-TTSSC----CGG-GTCSEEEEESSGGGCCCSCEEEEE
T ss_pred EEccccC---CCcCCHHHHHHHHHHcCCEEEEECcChHhhhh-ccccc----Cch-hcCcEEEecCCcccCCCCcEEEEe
Confidence 5544444 56778999999999999999999998754432 22211 111 1247999999999954 4699988
Q ss_pred C-HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCC-CCCCe
Q 040324 323 S-KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD-NDSPV 400 (488)
Q Consensus 323 ~-~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~ 400 (488)
+ +++.+.+.........+ +.++..++++.+++..+. .+..+++.+++.++.+++++.|++.|+++..+ ..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 322 (425)
T 3ecd_A 248 NDEEIAKKINSAVFPGLQG-GPLMHVIAGKAVAFGEAL----TDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHL 322 (425)
T ss_dssp SCHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSE
T ss_pred CCHHHHHHHHhhhCccccC-CccHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCCceE
Confidence 7 67777776543322222 234444444444443321 12456888999999999999999999988754 35677
Q ss_pred EEEEeCCc-chHHHHHHHHHHCCceEEeecCCC---ccCCCCeEEEeec----CCCCHHHHHHHHHHHHHHHHHh
Q 040324 401 MPIMVYNP-AKVSSFSRECLKQNVAIVTVGFPA---TPLLLARARICIS----ASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 401 ~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~~~~---~~~~~~~iRi~~~----~~~t~edid~~l~~l~~~~~~~ 467 (488)
+++.+... .....+.+.|.++||.+.+..+|. .+...+.+|++++ ..++++++++++++|+++++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 323 LLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp EEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 77776532 245678888888899998644333 2334568999944 4456999999999999998876
No 139
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.95 E-value=3.1e-27 Score=240.88 Aligned_cols=308 Identities=13% Similarity=0.022 Sum_probs=219.0
Q ss_pred CChhhHHHHHHHHHHHhCCC-CeEEeCCcHH-HH--hhhhhcccC--C----------CcEEEEeCCCchHHHHHHHhcC
Q 040324 143 GTLALHNELEECVARFVGKP-AAIVFGMGYV-TN--SSILPVLMG--K----------GSLIISDSLNHNSIVNGARGSG 206 (488)
Q Consensus 143 g~~~~~~~l~~~la~~~g~~-~~i~~~sGs~-a~--~~~~~~~~~--~----------~~~Vl~~~~~h~~~~~~~~~~g 206 (488)
+......+|++.+|++++.+ +.+++++|+. ++ ..++.++.. + |+.|+++.|+|..+...++..|
T Consensus 75 ~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g 154 (427)
T 3ppl_A 75 GGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG 154 (427)
T ss_dssp CCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC
Confidence 33344589999999999874 4566666555 44 266677665 5 8999999999999999999999
Q ss_pred CeEEEeeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChH---HHHHHH-HHcCcEEEEEcc
Q 040324 207 ATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLP---EIITIC-KRYKAYTYLDEA 278 (488)
Q Consensus 207 ~~v~~~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~---~l~~l~-~~~g~~li~DE~ 278 (488)
.+++.++.+ |+++|++.++. +..++++++...++++|.+.+.+ +|+++| ++||+++|+||+
T Consensus 155 ~~~~~v~~~~~g~d~~~l~~~l~~-----------~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~ 223 (427)
T 3ppl_A 155 FEMISVPMNEDGPDMDAVEELVKN-----------PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNA 223 (427)
T ss_dssp CEEEEEEEETTEECHHHHHHHTTS-----------TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred CEEEEeCCCCCCCCHHHHHHHHhc-----------CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECC
Confidence 999888754 78888887742 12444444557889999998765 888898 999999999999
Q ss_pred ccccccCCCCCCcchhcCC----CCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHH
Q 040324 279 HSIGAVGKTGRGVCELLGV----DTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQI 351 (488)
Q Consensus 279 ~s~g~~g~~g~~~~~~~~v----~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~ 351 (488)
|+...++..+......+++ +..+.+++++||||+ +++| ||+++++++++.+........+ +.+++.+.++
T Consensus 224 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~--~~~~~~q~~~ 300 (427)
T 3ppl_A 224 YAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGVSFFLTSAENRKWYTGHAGIRGI--GPNKVNQLAH 300 (427)
T ss_dssp TTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHHHHCS--CCCHHHHHHH
T ss_pred CcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccEEEEEcCHHHHHHHHHHhhcccC--CCCHHHHHHH
Confidence 9954465444322222221 124568999999999 4445 9999999999888765432223 3667766666
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh----C-CCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEE
Q 040324 352 ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQK----M-GFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIV 426 (488)
Q Consensus 352 ~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 426 (488)
.+.|+... ...++..+.++.++++.+.+.+.|++ + ++.+..+.++.++++.+... ...++.+.|.++||.+.
T Consensus 301 ~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-~~~~~~~~l~~~gv~v~ 377 (427)
T 3ppl_A 301 ARYFGDAE--GVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG-TASRVAELAKEAGIALT 377 (427)
T ss_dssp HHHHCSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT-CHHHHHHHHHHTTEECC
T ss_pred HHHHhChh--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc-hHHHHHHHHHHCCCEEe
Confidence 55554210 00113456666777777777777654 3 46666666778888887654 46788899999999998
Q ss_pred eecCCCc---cCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 427 TVGFPAT---PLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 427 ~~~~~~~---~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
+.+..+. ....+++||+++.. +++++++++++|.++++++.
T Consensus 378 ~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 378 GAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp CTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 7332121 13468999999544 99999999999999988764
No 140
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=8.9e-26 Score=232.71 Aligned_cols=339 Identities=12% Similarity=0.130 Sum_probs=231.9
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSIL 178 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~ 178 (488)
|+.||||.+ +++. +.+.+++.+++...... ++..+...+|++.++++++.++++++++|++|+..++
T Consensus 42 g~~ylD~~~----~~~~--~~v~~a~~~~~~~~~~~-------y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 42 SAVYIDLLT----DSGT--NAMSDHQWAAMITGDEA-------YAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILF 108 (467)
T ss_dssp GGCSEECSC----SSSC--CCEEHHHHHHHHTCCCC-------SSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHH
T ss_pred Cceeeeccc----CcCC--HHHHHHHHHHHhhcccc-------cccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHH
Confidence 789999963 3332 68889888887642111 2345667899999999999988999999999998888
Q ss_pred hcccC----CCcE---EEEeCCCchHHHHHHHhcCCeEEEee------------C---CCHHHHHHHHHHHHhcCCCCCC
Q 040324 179 PVLMG----KGSL---IISDSLNHNSIVNGARGSGATIRVFQ------------H---NTPSHLEEVLREQIAEGQPRTR 236 (488)
Q Consensus 179 ~~~~~----~~~~---Vl~~~~~h~~~~~~~~~~g~~v~~~~------------~---~d~~~Le~~l~~~~~~~~p~~~ 236 (488)
.++.. +|+. |++..+.|+.+...+...|..++.++ . .|+++|++.+++..
T Consensus 109 ~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~-------- 180 (467)
T 1ax4_A 109 PVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG-------- 180 (467)
T ss_dssp HHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--------
T ss_pred HHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC--------
Confidence 88877 8887 77776556777777888888877542 1 27899999987631
Q ss_pred CCCceEEEEEcCcCCCC-CCCC---ChHHHHHHHHHcCcEEEEEccccc-ccc-------CCCCCCcchhc-CCCCCCcc
Q 040324 237 RPWKKIMVVVEGIYSME-GELC---KLPEIITICKRYKAYTYLDEAHSI-GAV-------GKTGRGVCELL-GVDTSDVD 303 (488)
Q Consensus 237 ~~~~~~~vi~e~v~s~~-G~~~---~l~~l~~l~~~~g~~li~DE~~s~-g~~-------g~~g~~~~~~~-~v~p~~~d 303 (488)
+.++.+|+++++++++ |.+. ++++|+++|++||++||+||+|.. +.+ +..+....+.. +. ....|
T Consensus 181 -~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d 258 (467)
T 1ax4_A 181 -ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM-YKYAD 258 (467)
T ss_dssp -GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH-GGGCS
T ss_pred -CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhh-ccccc
Confidence 0145677888888887 6654 478999999999999999999874 222 32222211110 00 01236
Q ss_pred EEEcccccccCCc-ccEEEeC-H-HHHHHHHhhC----CCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 040324 304 IMMGTFSKSFGSY-GGYIAGS-K-ELIQYLKYNC----PAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRE 376 (488)
Q Consensus 304 i~~~t~sK~~g~~-Gg~i~~~-~-~~~~~~~~~~----~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~ 376 (488)
+++.|++|++|.+ ||+++++ + ++++.+.... ....++ ..+...++++.++++... .++..++..+
T Consensus 259 ~~~~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~-------~~~~~~~~~~ 330 (467)
T 1ax4_A 259 ALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYG-GLAGRDMAAMVQGLEEGT-------EEEYLHYRIG 330 (467)
T ss_dssp EEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTT-TCCHHHHHHHHHHHHHTT-------CHHHHHHHHH
T ss_pred eEEEeccccCCCCcceEEEeCCHHHHHHHHHhhccccccccccC-CccchHHHHHHHHHHHhh-------hhhHHHHHHH
Confidence 7788999999886 7888877 6 7877665321 111222 123222222333555431 1334555567
Q ss_pred HHHHHHHHHHhCCCeecCCCCCCeEEEE-------eCC-cchHHHHHHHH-HHCCceEEeec-C--CC----c---cCCC
Q 040324 377 NSNFFRSKLQKMGFEVLGDNDSPVMPIM-------VYN-PAKVSSFSREC-LKQNVAIVTVG-F--PA----T---PLLL 437 (488)
Q Consensus 377 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~l-~~~Gi~v~~~~-~--~~----~---~~~~ 437 (488)
+.+++.+.|++.++++..+.++..+++. +.. .....++++.| .++||.+.+.+ + .. . +...
T Consensus 331 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~ 410 (467)
T 1ax4_A 331 QVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADM 410 (467)
T ss_dssp HHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred HHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccccccccccccccc
Confidence 7889999998888887766677777776 221 12456899999 77799998732 1 11 0 1124
Q ss_pred CeEEEeec-CCCCHHHHHHHHHHHHHHHHHhC
Q 040324 438 ARARICIS-ASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 438 ~~iRi~~~-~~~t~edid~~l~~l~~~~~~~~ 468 (488)
+++||+++ ..+|++|+++++++|+++++++.
T Consensus 411 ~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 411 EFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp CEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred ceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 79999998 45899999999999999988753
No 141
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.95 E-value=1.1e-25 Score=231.34 Aligned_cols=335 Identities=10% Similarity=0.066 Sum_probs=224.4
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSIL 178 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~ 178 (488)
|..|+||.++ .+ +..+.+++.+++..... .++..+...+|++.++++++.++++++++|++|+..++
T Consensus 41 ~~~ylD~~~~----~~--~~~~~~~~~~a~~~~~~-------~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al 107 (456)
T 2ez2_A 41 KDIYIDLLTD----SG--TNAMSDKQWAGMMMGDE-------AYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLS 107 (456)
T ss_dssp GGCSEECSCS----SS--CCCCCHHHHHHHTTCCC-------CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHH
T ss_pred ccceeeeccc----cC--CccCCHHHHHHhhcchh-------hcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHH
Confidence 7889998642 11 11234555555543111 12345667899999999999999999999999998888
Q ss_pred hcccCCCcEEEEeCCCc-hHHHHHHHhcCCeEEEeeCC---------------CHHHHHHHHHHHHhcCCCCCCCCCceE
Q 040324 179 PVLMGKGSLIISDSLNH-NSIVNGARGSGATIRVFQHN---------------TPSHLEEVLREQIAEGQPRTRRPWKKI 242 (488)
Q Consensus 179 ~~~~~~~~~Vl~~~~~h-~~~~~~~~~~g~~v~~~~~~---------------d~~~Le~~l~~~~~~~~p~~~~~~~~~ 242 (488)
+++.++|| +++.++| +++...+...|++++.++.+ |+++|++.+++.. +....
T Consensus 108 ~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t---------~~~~~ 176 (456)
T 2ez2_A 108 QLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG---------AENIA 176 (456)
T ss_dssp HHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC---------GGGEE
T ss_pred HHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhcc---------cccee
Confidence 88889999 4555666 88888899999998877532 7899999887631 01234
Q ss_pred EEEEc-CcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccc--------cCCCCCCcch---hcCCCCCCccEEEc
Q 040324 243 MVVVE-GIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGA--------VGKTGRGVCE---LLGVDTSDVDIMMG 307 (488)
Q Consensus 243 ~vi~e-~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~--------~g~~g~~~~~---~~~v~p~~~di~~~ 307 (488)
+|+++ +.++++|.+.+ +++|+++|++||++||+||+|+.|. +.+.|....+ ..+..+ |+++.
T Consensus 177 ~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~---d~~~~ 253 (456)
T 2ez2_A 177 YICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYA---DGCTM 253 (456)
T ss_dssp EEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTC---SEEEE
T ss_pred EEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccC---CEEEE
Confidence 55555 44448898776 9999999999999999999998541 4455543211 122222 56666
Q ss_pred ccccccCCc-ccEEEe-CHHHHHHHHhhC---CCCcccCCCCHHHHHH-HHHHHHHHhccCCCchHHHHHHHHHHHHHHH
Q 040324 308 TFSKSFGSY-GGYIAG-SKELIQYLKYNC---PAHLYATSISPPAAEQ-IISAIQVVIGEDGSCRGAQKLARIRENSNFF 381 (488)
Q Consensus 308 t~sK~~g~~-Gg~i~~-~~~~~~~~~~~~---~~~~~~~~~~p~~~aa-~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l 381 (488)
|++|.++.+ ||++++ ++++++.+.... .++....+.++..+++ +++.++.+ . ++..++..++.+++
T Consensus 254 S~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~-------~-~~~~~~~~~~~~~l 325 (456)
T 2ez2_A 254 SGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAM-------Q-YEYIEHRVKQVRYL 325 (456)
T ss_dssp ETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHT-------C-HHHHHHHHHHHHHH
T ss_pred eCcccCCCCceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHh-------H-HHHHHHHHHHHHHH
Confidence 777876544 599988 688887765421 1111111234433333 44444432 1 45667778888999
Q ss_pred HHHHHhCCCeecCCCCCCeEEEEeC---Ccch-----HHHHHHHH-HHCCceEEeecC---CC-------ccCCCCeEEE
Q 040324 382 RSKLQKMGFEVLGDNDSPVMPIMVY---NPAK-----VSSFSREC-LKQNVAIVTVGF---PA-------TPLLLARARI 442 (488)
Q Consensus 382 ~~~L~~~g~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~l-~~~Gi~v~~~~~---~~-------~~~~~~~iRi 442 (488)
++.|++.|+++..+.++.++++.+. .... ...+++.| .++||.+.+.+. +. ...+.+++||
T Consensus 326 ~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRi 405 (456)
T 2ez2_A 326 GDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRL 405 (456)
T ss_dssp HHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred HHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEE
Confidence 9999988888776666777776652 1111 33447777 467998765331 10 0122478999
Q ss_pred eecCC-CCHHHHHHHHHHHHHHHHHhC
Q 040324 443 CISAS-HTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 443 ~~~~~-~t~edid~~l~~l~~~~~~~~ 468 (488)
+++.. +|++|+++++++|++++++..
T Consensus 406 s~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 406 TIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp ECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 99876 899999999999999987753
No 142
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.95 E-value=6.2e-26 Score=227.49 Aligned_cols=317 Identities=14% Similarity=0.125 Sum_probs=222.7
Q ss_pred CccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC------CeEEeCCcHHHHhhhhhccc---CCCcE
Q 040324 117 DEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP------AAIVFGMGYVTNSSILPVLM---GKGSL 187 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~------~~i~~~sGs~a~~~~~~~~~---~~~~~ 187 (488)
+..+.+++.+++.+.......+ .......++++.++++++.. .++++++|++++..++.++. ++|+.
T Consensus 13 p~~~~~~v~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~ 88 (385)
T 2bkw_A 13 PIILSGAVQKALDVPSLGHTSP----EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKN 88 (385)
T ss_dssp SCCCCHHHHHTTSCCCCCTTSH----HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCE
T ss_pred CcCchHHHHHHHhccccccCCH----HHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCe
Confidence 3445566666665543221100 11224577889999998762 46667788889888888877 88998
Q ss_pred EEEe-CCCchHH-HHHHHhcCCeEEEeeC-C-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCCh
Q 040324 188 IISD-SLNHNSI-VNGARGSGATIRVFQH-N-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKL 259 (488)
Q Consensus 188 Vl~~-~~~h~~~-~~~~~~~g~~v~~~~~-~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l 259 (488)
|++. .++|+.. ...++..|.+++.++. + |+++|++.+++. +..+|+++++++++|.+.++
T Consensus 89 vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------------~~~~v~~~~~~nptG~~~~l 156 (385)
T 2bkw_A 89 VLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQN------------SYGAVTVTHVDTSTAVLSDL 156 (385)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHS------------CCSEEEEESEETTTTEECCH
T ss_pred EEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcC------------CCCEEEEEccCCCcCeEcCH
Confidence 8666 5555554 3567778999998887 3 789999988751 23356678899999999999
Q ss_pred HHHHHHHHHc--CcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccC-Ccc-cEEEeCHHHHH-HHH---
Q 040324 260 PEIITICKRY--KAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG-SYG-GYIAGSKELIQ-YLK--- 331 (488)
Q Consensus 260 ~~l~~l~~~~--g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g-~~G-g~i~~~~~~~~-~~~--- 331 (488)
++|.++|++| |+++|+||+|+.|... +++...++|+++.|++|+++ ..| |+++++++.++ .+.
T Consensus 157 ~~i~~~~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~ 227 (385)
T 2bkw_A 157 KAISQAIKQTSPETFFVVDAVCSIGCEE---------FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSK 227 (385)
T ss_dssp HHHHHHHHHHCTTSEEEEECTTTTTTSC---------CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHH
T ss_pred HHHHHHHHhhCCCCEEEEECccccCCcc---------ccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhcc
Confidence 9999999999 9999999999854321 12222345899999999876 456 99999988776 431
Q ss_pred -------------------hhCCC-CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH-HhCCC
Q 040324 332 -------------------YNCPA-HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKL-QKMGF 390 (488)
Q Consensus 332 -------------------~~~~~-~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g~ 390 (488)
....+ .....+.++..++++.++++.+... ..++..++++++.+++.+.| +++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~g~ 303 (385)
T 2bkw_A 228 NGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEE----GLHKRWDLHREMSDWFKDSLVNGLQL 303 (385)
T ss_dssp HCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 01000 0111246777777777888876321 24677888999999999999 88888
Q ss_pred eecCCC-----CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEe-ec---CCCCHHHHHHHHHHHH
Q 040324 391 EVLGDN-----DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARIC-IS---ASHTKEDLIEALEVIS 461 (488)
Q Consensus 391 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~-~~---~~~t~edid~~l~~l~ 461 (488)
.+..+. .+.++++.+.. ..++.+.|.++||.+.+...+ ....+.+||+ ++ ..+|++|+++++++|+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~v~~g~~~--~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~ 378 (385)
T 2bkw_A 304 TSVSRYPSNMSAHGLTAVYVAD---PPDVIAFLKSHGVVIAGGIHK--DIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 378 (385)
T ss_dssp EESSCSSSTTBCSSCEEEECSC---HHHHHHHHHHTTEECBCCCCT--TTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred eecccCcccccCCceEEEecCC---HHHHHHHHHHCCeEEeCCCCc--ccCCCEEEEEccccccccCCHHHHHHHHHHHH
Confidence 876432 35677777653 668999999999998852211 1234789999 54 2579999999999999
Q ss_pred HHHHHh
Q 040324 462 RIGDLV 467 (488)
Q Consensus 462 ~~~~~~ 467 (488)
++++++
T Consensus 379 ~~~~~~ 384 (385)
T 2bkw_A 379 LALQRK 384 (385)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 987654
No 143
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.95 E-value=1.5e-27 Score=240.70 Aligned_cols=342 Identities=16% Similarity=0.145 Sum_probs=216.6
Q ss_pred cccccccCCcceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCC-cccCCCChhhHHHHHHHHHHHhCCC--CeEE
Q 040324 90 NKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCS-SRVDGGTLALHNELEECVARFVGKP--AAIV 166 (488)
Q Consensus 90 ~~~~~~~~~g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~-~~~~~g~~~~~~~l~~~la~~~g~~--~~i~ 166 (488)
.|.+....++.-|||+.++ +..+|.+.+++.+++++....... .....+..+...++++.++++++.+ .+++
T Consensus 11 ~~~~~~~~~~~iyld~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~ 85 (400)
T 3vax_A 11 SSGLVPRGSHMTYLDAAAT-----TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIF 85 (400)
T ss_dssp -----------CCCCCCCC-----SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred ccCCCcccCCcEEecCCCC-----CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEE
Confidence 3455555667788888643 234688999999998764221111 0111123455689999999999975 4666
Q ss_pred eCCcHHHHhhhhhccc----CCCc-EEEEeCCCchHHHHHHHh---cCCeEEEeeCC-----CHHHHHHHHHHHHhcCCC
Q 040324 167 FGMGYVTNSSILPVLM----GKGS-LIISDSLNHNSIVNGARG---SGATIRVFQHN-----TPSHLEEVLREQIAEGQP 233 (488)
Q Consensus 167 ~~sGs~a~~~~~~~~~----~~~~-~Vl~~~~~h~~~~~~~~~---~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p 233 (488)
+++|++++..++.++. ++|| .|+++.+.|+++...... .|++++.++.+ |+++|++.+++
T Consensus 86 ~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~------- 158 (400)
T 3vax_A 86 TSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRP------- 158 (400)
T ss_dssp ESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCT-------
T ss_pred eCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCC-------
Confidence 6777788888888887 8899 999999999998766554 58899988865 78888877653
Q ss_pred CCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEccccccc
Q 040324 234 RTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSF 313 (488)
Q Consensus 234 ~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~ 313 (488)
++.+|+++++++++|.+.++++|.++|++||+++|+||+|+.+... .++... +|+++.|++|.+
T Consensus 159 ------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~---------~~~~~~-~d~~~~s~~K~~ 222 (400)
T 3vax_A 159 ------DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVP---------GDLTTP-IDMISISGHKIG 222 (400)
T ss_dssp ------TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSG---------GGGGSC-CSEEEEETGGGT
T ss_pred ------CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCC---------cChhhc-CcEEEEeHHHhC
Confidence 4567888999999999999999999999999999999999854332 111112 489999999987
Q ss_pred CCcc-cEEE-eCH-HHH---HHHHhhCCC-----CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Q 040324 314 GSYG-GYIA-GSK-ELI---QYLKYNCPA-----HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFR 382 (488)
Q Consensus 314 g~~G-g~i~-~~~-~~~---~~~~~~~~~-----~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~ 382 (488)
|..| |+++ .++ ++. ..+.....+ .....+.++..++++.++++.+.. ..++..++++++.+++.
T Consensus 223 g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-----~~~~~~~~~~~~~~~l~ 297 (400)
T 3vax_A 223 APKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEA-----EHAQWQVAAQDLRSRLL 297 (400)
T ss_dssp SCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHH
Confidence 7665 7777 655 111 111111110 011233567777777788887632 45788899999999999
Q ss_pred HHHHhCCCeecCCCC---CCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCC------------ccC----CCCeEEEe
Q 040324 383 SKLQKMGFEVLGDND---SPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPA------------TPL----LLARARIC 443 (488)
Q Consensus 383 ~~L~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~------------~~~----~~~~iRi~ 443 (488)
+.|+..|+.+..+.. ..++.+.+. .....++.+.|. +||.+.+..... .+. ..+++||+
T Consensus 298 ~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls 375 (400)
T 3vax_A 298 AGLASTSFQVNGDQDHVVPHILNLSFE-DVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFS 375 (400)
T ss_dssp HHHTTTTCEECSCTTSBCTTEEEEECT-TCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEE
T ss_pred HhhCCCCEEEeCCcccCCCCEEEEEeC-CCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEE
Confidence 999844788776553 245566554 345678999999 999876411000 001 13799999
Q ss_pred e-cCCCCHHHHHHHHHHHHHHHHH
Q 040324 444 I-SASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 444 ~-~~~~t~edid~~l~~l~~~~~~ 466 (488)
+ +..+|++|+++++++|++++++
T Consensus 376 ~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 376 WTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEEC--------------------
T ss_pred ccCCCCCHHHHHHHHHHHHHHhcc
Confidence 9 9999999999999999988653
No 144
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.95 E-value=8.1e-27 Score=235.63 Aligned_cols=318 Identities=15% Similarity=0.156 Sum_probs=231.6
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhh
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILP 179 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~ 179 (488)
++||||+++.. .+ ++.+.+++.++++.. .+ +..+...++++.++++++.++++++++|++++..++.
T Consensus 30 ~~~id~~~~~~-~~---~~~v~~a~~~~~~~~--~y-------~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~ 96 (399)
T 2oga_A 30 VPFLDLKAAYE-EL---RAETDAAIARVLDSG--RY-------LLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALR 96 (399)
T ss_dssp BCSCCHHHHHH-HT---HHHHHHHHHHHHHHT--CC-------SSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHH
T ss_pred CcccccCcCCC-CC---CHHHHHHHHHHHhcC--CC-------CCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHH
Confidence 57899874432 12 278888988888752 11 2346678999999999999889999999999988888
Q ss_pred cc-cCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCC
Q 040324 180 VL-MGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSM 252 (488)
Q Consensus 180 ~~-~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~ 252 (488)
++ .++++.|+++.+.|+++...++..|.+++.++.+ |+++|++.+++ +..+|+. .++
T Consensus 97 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-------------~~~~v~~---~n~ 160 (399)
T 2oga_A 97 GLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITP-------------RTRALLP---VHL 160 (399)
T ss_dssp HTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT-------------TEEEECC---BCG
T ss_pred HhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC-------------CCeEEEE---eCC
Confidence 88 8899999999999999999999999999888743 68888877653 2334443 345
Q ss_pred CCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEccc--ccccCCc--ccEEEeC-HHHH
Q 040324 253 EGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTF--SKSFGSY--GGYIAGS-KELI 327 (488)
Q Consensus 253 ~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~--sK~~g~~--Gg~i~~~-~~~~ 327 (488)
.|.+.++++|.++|+++|+++|+||+|+.|... .+.. ++.- .|+++.|+ +|.+|++ ||+++.+ ++++
T Consensus 161 tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~----~~~~---~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~ 232 (399)
T 2oga_A 161 YGHPADMDALRELADRHGLHIVEDAAQAHGARY-RGRR----IGAG---SSVAAFSFYPGKNLGCFGDGGAVVTGDPELA 232 (399)
T ss_dssp GGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTEE----TTCT---TCEEEEECCTTSSSCCSSCCEEEEESCHHHH
T ss_pred cCCccCHHHHHHHHHHcCCEEEEECcccccCcc-CCee----cccc---cCEEEEeCCCCccCCcCCceEEEEeCCHHHH
Confidence 788899999999999999999999999865332 2321 1211 27888898 7999874 4888875 8888
Q ss_pred HHHHhhCC-CC---------cccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCC
Q 040324 328 QYLKYNCP-AH---------LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDN 396 (488)
Q Consensus 328 ~~~~~~~~-~~---------~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 396 (488)
+.+..... +. .++...++..++++.++++.+ ++..++.+++.+++.+.|+++ |+.+...+
T Consensus 233 ~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~---------~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 303 (399)
T 2oga_A 233 ERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL---------DSWNGRRSALAAEYLSGLAGLPGIGLPVTA 303 (399)
T ss_dssp HHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH---------HHHHHHHHHHHHHHHHHTTTCTTCBCCCCC
T ss_pred HHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhccCCCccccCCC
Confidence 77764321 10 112246888888888888754 456677788889999999886 66654322
Q ss_pred -CC-Ce---EEEEeCCcchHHHHHHHHHHCCceEEeecCCCccC---------------------CCCeEEEeecCCCCH
Q 040324 397 -DS-PV---MPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPL---------------------LLARARICISASHTK 450 (488)
Q Consensus 397 -~~-~~---~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~---------------------~~~~iRi~~~~~~t~ 450 (488)
.+ ++ +++.. ....++.+.|.++||.+.+ +++.... ..+.+||+++..+|+
T Consensus 304 ~~~~~~~~~~~~~~---~~~~~l~~~L~~~gI~v~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~ 379 (399)
T 2oga_A 304 PDTDPVWHLFTVRT---ERRDELRSHLDARGIDTLT-HYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLER 379 (399)
T ss_dssp TTEECCCSSEEEEC---SSHHHHHHHHHHTTBCCBC-SCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCH
T ss_pred CCCcceeEEEEEEC---CCHHHHHHHHHHCCCceec-CCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCH
Confidence 22 21 33321 2466899999999999975 3321100 025799999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040324 451 EDLIEALEVISRIGDLV 467 (488)
Q Consensus 451 edid~~l~~l~~~~~~~ 467 (488)
+|+++++++|+++++++
T Consensus 380 edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 380 PQALRVIDAVREWAERV 396 (399)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 145
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.95 E-value=9.5e-26 Score=225.41 Aligned_cols=314 Identities=16% Similarity=0.122 Sum_probs=226.3
Q ss_pred CCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcc---cCCCcEEE
Q 040324 113 FAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL---MGKGSLII 189 (488)
Q Consensus 113 ~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~---~~~~~~Vl 189 (488)
.+..+|.+.+++.+++++. ..+ ..+...++++.++++++.+.++++++|++++..++.++ .++|+.|+
T Consensus 8 ~~~~~~~v~~a~~~~~~~~-~~~--------~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl 78 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSK-QLT--------QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEII 78 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSS-CCS--------SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEE
T ss_pred CCCCCHHHHHHHHHHHHcC-ccc--------CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEE
Confidence 3444788889998888652 111 23556899999999999988888999999998888888 88999999
Q ss_pred EeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHH
Q 040324 190 SDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIIT 264 (488)
Q Consensus 190 ~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~ 264 (488)
++.+.|+++...+...|.+++.++.+ |+++|++.+.+ ..++++++.+ .|.+.++++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~------------~~~~v~~~~~----tG~~~~l~~i~~ 142 (375)
T 2fnu_A 79 TTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINE------------RTKAIVSVDY----AGKSVEVESVQK 142 (375)
T ss_dssp ECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCT------------TEEEEEEECG----GGCCCCHHHHHH
T ss_pred ECCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcCc------------CceEEEEeCC----cCCccCHHHHHH
Confidence 99999999999999999999988764 67777766542 2444455443 688899999999
Q ss_pred HHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccc--cccCCcc-cEEEe-C-HHHHHHHHhhCCCC--
Q 040324 265 ICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGSYG-GYIAG-S-KELIQYLKYNCPAH-- 337 (488)
Q Consensus 265 l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~s--K~~g~~G-g~i~~-~-~~~~~~~~~~~~~~-- 337 (488)
+|++||+++|+||+|+.|... .+. ..+..+ |+++.|++ |.+|. | |+++. + +++++.+.......
T Consensus 143 l~~~~~~~li~D~a~~~~~~~-~~~----~~~~~~---~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~ 213 (375)
T 2fnu_A 143 LCKKHSLSFLSDSSHALGSEY-QNK----KVGGFA---LASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGML 213 (375)
T ss_dssp HHHHHTCEEEEECTTCTTCEE-TTE----ETTSSS---SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEE
T ss_pred HHHHcCCEEEEECccccCCeE-CCe----eccccC---CeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCc
Confidence 999999999999999865432 111 122111 56677888 99976 5 55554 4 77888776543211
Q ss_pred ------------cccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCC----CC-C
Q 040324 338 ------------LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDN----DS-P 399 (488)
Q Consensus 338 ------------~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~-~ 399 (488)
.+....++..++.++..++ ..++..++.+++.+++.+.|+++ |+.+..+. .+ .
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---------~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 284 (375)
T 2fnu_A 214 KKDFFEGEVKSIGHNFRLNEIQSALGLSQLK---------KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNH 284 (375)
T ss_dssp ESSSSCEEESSCCCBCCCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCS
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceE
Confidence 1112366766665555433 34678888999999999999987 77765431 22 4
Q ss_pred eEEEEeCCc-c-hHHHHHHHHHHCCceEEeecCCCc--------------c----CCCCeEEEeecCCCCHHHHHHHHHH
Q 040324 400 VMPIMVYNP-A-KVSSFSRECLKQNVAIVTVGFPAT--------------P----LLLARARICISASHTKEDLIEALEV 459 (488)
Q Consensus 400 ~~~~~~~~~-~-~~~~~~~~l~~~Gi~v~~~~~~~~--------------~----~~~~~iRi~~~~~~t~edid~~l~~ 459 (488)
++++.+... . ...++.+.|.++||.+.....|.. + ...+.+||+++..+|++|+++++++
T Consensus 285 ~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~ 364 (375)
T 2fnu_A 285 LYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHS 364 (375)
T ss_dssp CEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHH
T ss_pred EEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHH
Confidence 456666432 2 567899999999999883211110 0 0126799999888999999999999
Q ss_pred HHHHHHHhCC
Q 040324 460 ISRIGDLVGI 469 (488)
Q Consensus 460 l~~~~~~~~~ 469 (488)
|+++++++++
T Consensus 365 l~~~~~~~~~ 374 (375)
T 2fnu_A 365 VLKTFESFKI 374 (375)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcC
Confidence 9999988753
No 146
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.95 E-value=2e-26 Score=233.66 Aligned_cols=333 Identities=13% Similarity=0.060 Sum_probs=226.5
Q ss_pred cceeEEeccccccCC---CCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh-CC-------CCeEE-
Q 040324 99 VSRCLNLGSYNYLGF---AAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV-GK-------PAAIV- 166 (488)
Q Consensus 99 g~~~ld~~s~~~lg~---~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~-------~~~i~- 166 (488)
|+.++||+++.++.. ...+|.+.+++.+++++.+.. ..++......++++.+++++ +. +++++
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-----~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~ 103 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN-----HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGV 103 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC-----CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhc-----cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEE
Confidence 677899987766443 223467777777766321111 11223334489999999998 43 45666
Q ss_pred -eCCcHHHHhhhhh--cccCCC-----cEEEEeCCCchHHHHHHHhcCCe-EEEeeC---C----CHHHHHHHHHHHHhc
Q 040324 167 -FGMGYVTNSSILP--VLMGKG-----SLIISDSLNHNSIVNGARGSGAT-IRVFQH---N----TPSHLEEVLREQIAE 230 (488)
Q Consensus 167 -~~sGs~a~~~~~~--~~~~~~-----~~Vl~~~~~h~~~~~~~~~~g~~-v~~~~~---~----d~~~Le~~l~~~~~~ 230 (488)
+++|++++..+++ .+..+| +.|+++.++|+.+...++..|.+ ++.++. + |+++|++.+.+.
T Consensus 104 ~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~--- 180 (412)
T 1ajs_A 104 QSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA--- 180 (412)
T ss_dssp EEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS---
T ss_pred ECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhC---
Confidence 7778888866643 445688 89999999999999999999999 988886 3 789999888752
Q ss_pred CCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCC---CC-cchhcCCCCCCcc
Q 040324 231 GQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTG---RG-VCELLGVDTSDVD 303 (488)
Q Consensus 231 ~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g---~~-~~~~~~v~p~~~d 303 (488)
++ +..++++....+++|.+.+ +++|+++|++||++||+||+|+ .++.+| .. ....+... .+.+
T Consensus 181 ------~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~--~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (412)
T 1ajs_A 181 ------PE-FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQ--GFASGNLEKDAWAIRYFVSE-GFEL 250 (412)
T ss_dssp ------CT-TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT--TTTTSCHHHHTHHHHHHHHT-TCCE
T ss_pred ------CC-CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccc--cccCCcccccchHHHHHhcc-CCcE
Confidence 11 3445656777888888764 7789999999999999999999 676655 22 12212111 2335
Q ss_pred EEEcccccccCCcc---cEEEe---CHHH----HHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhc-cCCCchHHHHHH
Q 040324 304 IMMGTFSKSFGSYG---GYIAG---SKEL----IQYLKYNCPAHLYATSISPPAAEQIISAIQVVIG-EDGSCRGAQKLA 372 (488)
Q Consensus 304 i~~~t~sK~~g~~G---g~i~~---~~~~----~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~-~~~~~~~~~~~~ 372 (488)
+++.|+||++|.+| ||+++ ++++ ++.+..... .+++ +.+++.++++.++|+...- ....+..++.++
T Consensus 251 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1ajs_A 251 FCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVR-VTWS-NPPAQGARIVARTLSDPELFHEWTGNVKTMAD 328 (412)
T ss_dssp EEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHH-TTTS-SCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHh-cccC-CCChHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 88899999999877 99998 8874 444443211 1222 2467777777777764200 000114567888
Q ss_pred HHHHHHHHHHHHHHhCC----CeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCC
Q 040324 373 RIRENSNFFRSKLQKMG----FEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASH 448 (488)
Q Consensus 373 ~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~ 448 (488)
+++++.+++.+.|++++ +.+..+.++.++++.+ + ...+.+.+.++||.+.+ .+||+++. +
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~l~~~gv~v~~-----------~~Ris~~~-~ 392 (412)
T 1ajs_A 329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL--N--PKQVEYLINQKHIYLLP-----------SGRINMCG-L 392 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC--C--HHHHHHHHHTTCEECCT-----------TSEEEGGG-C
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC--C--HHHHHHHHHhCCEEecC-----------CcEEEeee-C
Confidence 99999999999999986 6665555555544322 1 33344445567999873 26999863 5
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 040324 449 TKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 449 t~edid~~l~~l~~~~~~~ 467 (488)
|++++++++++|+++++++
T Consensus 393 ~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 393 TTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 147
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.95 E-value=1.1e-25 Score=228.24 Aligned_cols=336 Identities=16% Similarity=0.170 Sum_probs=225.5
Q ss_pred eeEEe-ccccccCCCCCCccchHHHHHHH-HHcCCCCCCcccCCCChhhHHH----HHHHHHHHhCCCCe-EEeCCcHHH
Q 040324 101 RCLNL-GSYNYLGFAAADEYCTPRVIDSL-KKYSHSTCSSRVDGGTLALHNE----LEECVARFVGKPAA-IVFGMGYVT 173 (488)
Q Consensus 101 ~~ld~-~s~~~lg~~~~~~~v~~a~~~~l-~~~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~~-i~~~sGs~a 173 (488)
+.+++ +|.+++ +|.+.+++.+++ +.+..++.+++...+. ....+ +++.++++++.+.. +++++|+++
T Consensus 26 ~~i~l~~~~~~~-----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a 99 (417)
T 3n0l_A 26 EGLEMIASENFT-----LPEVMEVMGSILTNKYAEGYPGKRYYGGC-EFVDEIETLAIERCKKLFNCKFANVQPNSGSQA 99 (417)
T ss_dssp HSEECCTTCCCC-----CHHHHHHHTBGGGGCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred cCeeeecccCCC-----CHHHHHHHhhhhhccccccCCCccccccc-hHHHHHHHHHHHHHHHHhCCCCcceEeccHHHH
Confidence 44666 333442 688999998888 4443344433333332 44444 44588999998754 889999999
Q ss_pred HhhhhhcccCCCcEEEEeCCCchHHHH---HHHhc--CCeEEEeeC-----CCHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 174 NSSILPVLMGKGSLIISDSLNHNSIVN---GARGS--GATIRVFQH-----NTPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 174 ~~~~~~~~~~~~~~Vl~~~~~h~~~~~---~~~~~--g~~v~~~~~-----~d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
+..++.++.++||.|+++.+.|+++.. ..... +..++.++. .|+++|++.+++. ..+++
T Consensus 100 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----------~~~~v 168 (417)
T 3n0l_A 100 NQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE-----------KPKLI 168 (417)
T ss_dssp HHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHH-----------CCSEE
T ss_pred HHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhc-----------CCeEE
Confidence 988889999999999999999987644 22333 334455543 3899999998742 13444
Q ss_pred EEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCc-ccEEEe
Q 040324 244 VVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSY-GGYIAG 322 (488)
Q Consensus 244 vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~-Gg~i~~ 322 (488)
+++.+. .|.+.++++|+++|++||++||+||+|+.|... .+.. ... ....|+++.|++|+++++ ||++++
T Consensus 169 ~~~~~~---~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~----~~~-~~~~di~~~s~sK~l~g~~~G~~~~ 239 (417)
T 3n0l_A 169 VCGASA---YARVIDFAKFREIADEIGAYLFADIAHIAGLVV-AGEH----PSP-FPYAHVVSSTTHKTLRGPRGGIIMT 239 (417)
T ss_dssp EECCSS---CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHH-TTSS----CCC-TTTCSEEEEESSTTTCSCSCEEEEE
T ss_pred EECCcc---cCccCCHHHHHHHHHHcCCEEEEECccchhhhh-cccC----CCc-cccceEEEeeCccccCCCCeeEEEE
Confidence 433333 388889999999999999999999998754432 1111 111 123589999999999654 699999
Q ss_pred C-HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCC-CCCCe
Q 040324 323 S-KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD-NDSPV 400 (488)
Q Consensus 323 ~-~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~ 400 (488)
+ +++++.+......... .+.++..+++..+++.... .+..+++.+++.++.+++.+.|++.|+.+... ..+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~~~~~~aa~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 314 (417)
T 3n0l_A 240 NDEELAKKINSAIFPGIQ-GGPLMHVIAAKAVGFKFNL----SDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHL 314 (417)
T ss_dssp SCHHHHHHHHHHHTTTTC-SSCCHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSE
T ss_pred CCHHHHHHHhhhhCCccc-CCcHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHhCCceeccCCCCceE
Confidence 8 7888888765432222 2356666666666666532 12456888899999999999999988887652 23466
Q ss_pred EEEEeCCc-chHHHHHHHHHHCCceEEeecCCCc---cCCCCeEEEeecC----CCCHHHHHHHHHHHHHHHHHh
Q 040324 401 MPIMVYNP-AKVSSFSRECLKQNVAIVTVGFPAT---PLLLARARICISA----SHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 401 ~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~~~~~---~~~~~~iRi~~~~----~~t~edid~~l~~l~~~~~~~ 467 (488)
+++.+... .....+.+.|.++||.+.+...|.. +...+.+|++++. .+|++|+++++++|++++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 315 VLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp EEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 77766433 2566788888888999987554433 3345779998753 367999999999999998754
No 148
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.95 E-value=3.2e-25 Score=220.48 Aligned_cols=278 Identities=17% Similarity=0.194 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhCCC-CeEEeCCc-HHHHhhhhhcccCCC-cEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHH
Q 040324 148 HNELEECVARFVGKP-AAIVFGMG-YVTNSSILPVLMGKG-SLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSH 219 (488)
Q Consensus 148 ~~~l~~~la~~~g~~-~~i~~~sG-s~a~~~~~~~~~~~~-~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~ 219 (488)
..++++.+|++++.+ +.+++++| ++++..+++++.++| +.|+++.|+|+.+...++..|.+++.++.+ |+++
T Consensus 60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~ 139 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQG 139 (356)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHH
T ss_pred HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHH
Confidence 479999999999875 44555555 566778888888899 999999999999999999999999888753 5666
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLG 296 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~ 296 (488)
+++.++ ..+++++ ...++++|.+.+ +++|+++|+ +|+++|+||+|+ .+++ +.......+
T Consensus 140 l~~~i~-------------~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~--~~~~-~~~~~~~~~ 201 (356)
T 1fg7_A 140 ISDKLD-------------GVKVVYV-CSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYI--EFCP-QASLAGWLA 201 (356)
T ss_dssp HHTSCT-------------TEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTG--GGSG-GGCSGGGTT
T ss_pred HHHHhc-------------CCCEEEE-eCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccch--hhcC-CCcHHHHHh
Confidence 665543 1444444 577889998887 455566666 999999999999 4442 112222222
Q ss_pred CCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 040324 297 VDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLAR 373 (488)
Q Consensus 297 v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~ 373 (488)
..+.++++.||||++|.+| ||+++++++++.+...... + +.+++.++++.++|+... .++.++.+++
T Consensus 202 --~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~--~--~~~~~~~~a~~~~l~~~~----~~~~~~~~~~ 271 (356)
T 1fg7_A 202 --EYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAP--Y--PLSTPVADIAAQALSPQG----IVAMRERVAQ 271 (356)
T ss_dssp --TCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCS--S--CSCHHHHHHHHHHTSHHH----HHHHHHHHHH
T ss_pred --hCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCC--C--CCCHHHHHHHHHHhcCcc----HHHHHHHHHH
Confidence 2345788999999999777 9999999999998876543 3 378888888877776421 0125678888
Q ss_pred HHHHHHHHHHHHHhCC--CeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHH
Q 040324 374 IRENSNFFRSKLQKMG--FEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKE 451 (488)
Q Consensus 374 ~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~e 451 (488)
++++.+++.+.|++++ ..+ .+..+.++++.+. +..++.++|.++||.+.+.+.... ..+++||+++ +++
T Consensus 272 ~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~---~~~~l~~~L~~~gI~v~~~g~~~~--~~~~iRis~~---~~~ 342 (356)
T 1fg7_A 272 IIAEREYLIAALKEIPCVEQV-FDSETNYILARFK---ASSAVFKSLWDQGIILRDQNKQPS--LSGCLRITVG---TRE 342 (356)
T ss_dssp HHHHHHHHHHHHHHSTTEEEE-CCCSSSEEEEEET---THHHHHHHHHHTTEECEECTTSTT--CTTEEEEECC---CHH
T ss_pred HHHHHHHHHHHHHhCCCceEE-CCCCCeEEEEECC---CHHHHHHHHHHCCEEEEECCCCCC--CCCeEEEEeC---CHH
Confidence 9999999999999986 333 3455677777765 466899999999999997332222 1368999984 799
Q ss_pred HHHHHHHHHHH
Q 040324 452 DLIEALEVISR 462 (488)
Q Consensus 452 did~~l~~l~~ 462 (488)
|+++++++|++
T Consensus 343 e~~~~~~~l~~ 353 (356)
T 1fg7_A 343 ESQRVIDALRA 353 (356)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 149
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.95 E-value=9.4e-26 Score=227.06 Aligned_cols=309 Identities=17% Similarity=0.158 Sum_probs=227.8
Q ss_pred CccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcc-cCCCcEEEEeCCCc
Q 040324 117 DEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL-MGKGSLIISDSLNH 195 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~-~~~~~~Vl~~~~~h 195 (488)
++.+.+++.+++++.. + ...+...++++.+|++++.+.++++++|++++..++.++ .++|+.|+++.+.|
T Consensus 19 ~~~~~~a~~~~~~~~~--~-------~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~ 89 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGW--I-------TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTW 89 (393)
T ss_dssp CHHHHHHHHHHHHHTC--C-------SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHhcCC--c-------CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCcc
Confidence 4678888888887631 1 234667899999999999988999999999998888888 88999999999999
Q ss_pred hHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHc
Q 040324 196 NSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRY 269 (488)
Q Consensus 196 ~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~ 269 (488)
+++...++..|.+++.++.+ |+++|++.+++ +..+|++.+ +.|.+.++++|.++|++|
T Consensus 90 ~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------------~~~~v~~~~---~~G~~~~~~~i~~l~~~~ 153 (393)
T 1mdo_A 90 VSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-------------QTKAIIPVH---YAGAPADLDAIYALGERY 153 (393)
T ss_dssp HHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-------------TEEEECCBC---GGGCCCCHHHHHHHHHHH
T ss_pred HhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-------------CceEEEEeC---CCCCcCCHHHHHHHHHHc
Confidence 99999999999999988743 78888877653 233444433 468888999999999999
Q ss_pred CcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccc--cccCC-cccEEEeC-HHHHHHHHhhCCC---------
Q 040324 270 KAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGS-YGGYIAGS-KELIQYLKYNCPA--------- 336 (488)
Q Consensus 270 g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~s--K~~g~-~Gg~i~~~-~~~~~~~~~~~~~--------- 336 (488)
|+++|+||+|+.|... .++. ++. .|+++.|++ |++++ .||+++++ +++++.+......
T Consensus 154 ~~~li~D~a~~~g~~~-~~~~----~~~----~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 224 (393)
T 1mdo_A 154 GIPVIEDAAHATGTSY-KGRH----IGA----RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDR 224 (393)
T ss_dssp TCCBCEECTTCTTCEE-TTEE----TTS----SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC----
T ss_pred CCeEEEECccccCCeE-CCee----cCC----CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhh
Confidence 9999999999864332 2221 221 489999999 88864 34888886 8888887654321
Q ss_pred ------Ccc-----c--CCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCC------CC
Q 040324 337 ------HLY-----A--TSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD------ND 397 (488)
Q Consensus 337 ------~~~-----~--~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~------~~ 397 (488)
+.+ + ..++++.++.++..++.+ ++..++.+++.+++++.|++.++.+... ..
T Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~---------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 295 (393)
T 1mdo_A 225 QSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL---------DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHA 295 (393)
T ss_dssp -------CCEESSCCCBCCCCHHHHHHHHHHHHTH---------HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECC
T ss_pred hcccccccccccccCccCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCce
Confidence 111 0 225777776666666533 5677777889999999999988765432 23
Q ss_pred CCeEEEEeCC---cchHHHHHHHHHHCCceEEeecCCC--------------ccC----CCCeEEEeecCCCCHHHHHHH
Q 040324 398 SPVMPIMVYN---PAKVSSFSRECLKQNVAIVTVGFPA--------------TPL----LLARARICISASHTKEDLIEA 456 (488)
Q Consensus 398 ~~~~~~~~~~---~~~~~~~~~~l~~~Gi~v~~~~~~~--------------~~~----~~~~iRi~~~~~~t~edid~~ 456 (488)
+.++++.+.. .....++.+.|.++||.+.+...+. .+. ..+.+|++++..+|++|++++
T Consensus 296 ~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~ 375 (393)
T 1mdo_A 296 WHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRV 375 (393)
T ss_dssp CSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHH
T ss_pred eEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHH
Confidence 3567777753 2356789999999999998633220 111 135799999888999999999
Q ss_pred HHHHHHHHHHhC
Q 040324 457 LEVISRIGDLVG 468 (488)
Q Consensus 457 l~~l~~~~~~~~ 468 (488)
+++|+++++...
T Consensus 376 ~~~l~~~~~~~~ 387 (393)
T 1mdo_A 376 ITALHQIAGQGS 387 (393)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHhcCC
Confidence 999999876653
No 150
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=6.4e-26 Score=228.04 Aligned_cols=310 Identities=15% Similarity=0.114 Sum_probs=224.9
Q ss_pred CccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcc-cCCCcEEEEeCCCc
Q 040324 117 DEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL-MGKGSLIISDSLNH 195 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~-~~~~~~Vl~~~~~h 195 (488)
.+++.+++.+++++.... +...+...++++.++++++.++.+++++|++++..++.++ .++|+.|+++.+.|
T Consensus 16 ~~~~~~a~~~~l~~~~~~-------~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~ 88 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWW-------RMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTF 88 (388)
T ss_dssp CHHHHHHHHHHHHTSCCB-------TTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHHcCCee-------ecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCcc
Confidence 377888888888762111 1234567899999999999988999999999998888888 78999999999999
Q ss_pred hHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHc
Q 040324 196 NSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRY 269 (488)
Q Consensus 196 ~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~ 269 (488)
+++...++..|++++.++.+ |+++|++.+++ ++.+|+ +.++.|.+.++++|.++|++|
T Consensus 89 ~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-------------~~~~v~---~~n~tG~~~~l~~i~~la~~~ 152 (388)
T 1b9h_A 89 ISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP-------------RTKVIM---PVHMAGLMADMDALAKISADT 152 (388)
T ss_dssp THHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-------------TEEEEC---CBCGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-------------CceEEE---EeCCccCcCCHHHHHHHHHHc
Confidence 99999999999999988753 78888877743 233444 456689999999999999999
Q ss_pred CcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccc--cccCC-cccEEEeCHH-H--HHHHHhhCC-C------
Q 040324 270 KAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGS-YGGYIAGSKE-L--IQYLKYNCP-A------ 336 (488)
Q Consensus 270 g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~s--K~~g~-~Gg~i~~~~~-~--~~~~~~~~~-~------ 336 (488)
|++||+||+|+.|.. +.|..... ++ |+.+.||| |++++ .||+++++++ + ++.+..... +
T Consensus 153 ~~~li~D~a~~~g~~-~~~~~~~~-~~------~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (388)
T 1b9h_A 153 GVPLLQDAAHAHGAR-WQGKRVGE-LD------SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDR 224 (388)
T ss_dssp TCCBCEECTTCTTCE-ETTEEGGG-SS------SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCS
T ss_pred CCEEEEecchhcCCc-cCCeeccc-cc------ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCc
Confidence 999999999985432 22322111 11 46666877 76743 3488888865 6 566543221 0
Q ss_pred -C---c--ccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCC------CCCCeEEE
Q 040324 337 -H---L--YATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGD------NDSPVMPI 403 (488)
Q Consensus 337 -~---~--~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~------~~~~~~~~ 403 (488)
+ . .+..+++..++++.+.++. .++..++.+++.+++.+.|+++ |+.+..+ ..+.++++
T Consensus 225 ~~~~~~~g~~~~~~~~~~a~~~~~~~~---------l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (388)
T 1b9h_A 225 RYFHKIAGSNMRLNEFSASVLRAQLAR---------LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMF 295 (388)
T ss_dssp SCCCCSCCCBCBCBHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEE
T ss_pred cceeecccccCCcCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEE
Confidence 0 0 1112566666665555543 3567788888999999999987 7777652 23567777
Q ss_pred EeCCc--chHHHHHHHHHHCCceEEeecCCCc--c--------C----------------CCCeEEEeecCCC-CHHHHH
Q 040324 404 MVYNP--AKVSSFSRECLKQNVAIVTVGFPAT--P--------L----------------LLARARICISASH-TKEDLI 454 (488)
Q Consensus 404 ~~~~~--~~~~~~~~~l~~~Gi~v~~~~~~~~--~--------~----------------~~~~iRi~~~~~~-t~edid 454 (488)
.+... ....++.+.|.++||.+.+...|.. + . ..+.+||+++..+ |++|+|
T Consensus 296 ~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~ 375 (388)
T 1b9h_A 296 RIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELH 375 (388)
T ss_dssp ECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHH
T ss_pred EeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHH
Confidence 77542 2567899999999999986332210 0 0 0136999998889 999999
Q ss_pred HHHHHHHHHHHH
Q 040324 455 EALEVISRIGDL 466 (488)
Q Consensus 455 ~~l~~l~~~~~~ 466 (488)
+++++|++++++
T Consensus 376 ~~~~~l~~~~~~ 387 (388)
T 1b9h_A 376 ATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 151
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.95 E-value=1.5e-26 Score=231.97 Aligned_cols=295 Identities=14% Similarity=0.063 Sum_probs=211.1
Q ss_pred hhHHHHHHHHHHHhCCCCeEEe-CCcHHHHhhhhhcccCCCcEEEEeCCCchHHHH--HHHhcC--CeEEEee-------
Q 040324 146 ALHNELEECVARFVGKPAAIVF-GMGYVTNSSILPVLMGKGSLIISDSLNHNSIVN--GARGSG--ATIRVFQ------- 213 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~~~i~~-~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~--~~~~~g--~~v~~~~------- 213 (488)
+..+++++.++++++.++.+++ ++|++++..++.. ..+++.|++..+.|.+... .++..| .++..++
T Consensus 35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 113 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDT 113 (379)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccc
Confidence 4557889999999998765554 6888888766654 4688888888777765432 233334 3555554
Q ss_pred -------CCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccc
Q 040324 214 -------HNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGA 283 (488)
Q Consensus 214 -------~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~ 283 (488)
..|++++++.+++. +..+|++..+.+..|.+.| +++|+++|++||+++|+|++|+ |+
T Consensus 114 ~~~~~~~~~d~~~l~~~i~~~------------~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~ 180 (379)
T 3ke3_A 114 EAPKPFAPVDIETAVAKIKED------------KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GC 180 (379)
T ss_dssp SSCCCEECCCHHHHHHHHHHH------------TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TT
T ss_pred cccCCCCCCCHHHHHHHHhhc------------CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CC
Confidence 25889999988642 2234556667777898889 9999999999999999999997 43
Q ss_pred cCCCCCCcchhcCCCCCCccEEEcccccccCC-cc-cEEEeCHHHHHHHHhhC-CCC-------------------cccC
Q 040324 284 VGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS-YG-GYIAGSKELIQYLKYNC-PAH-------------------LYAT 341 (488)
Q Consensus 284 ~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~-~G-g~i~~~~~~~~~~~~~~-~~~-------------------~~~~ 341 (488)
.. ...+.+ ++|+++.|++|++++ .| |+++.++++++.+.... .++ .+..
T Consensus 181 ~~----~~~~~~-----~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 251 (379)
T 3ke3_A 181 VW----LDMKEL-----GIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHA 251 (379)
T ss_dssp CC----CCHHHH-----TCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSS
T ss_pred cc----cccccc-----CCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCC
Confidence 21 112222 347888999999976 34 89999999988886521 111 1223
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCC--CCeEEEEeCCcchHHHHHHHHH
Q 040324 342 SISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND--SPVMPIMVYNPAKVSSFSRECL 419 (488)
Q Consensus 342 ~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 419 (488)
+.++..++++.++|+.+..+ ..+++.++.+++.+++++.|+++|+++..+.. ++.+........ ...+.+.|.
T Consensus 252 t~~~~~~~a~~aal~~~~~~----g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~L~ 326 (379)
T 3ke3_A 252 TMPTDSLRQFRDAILEAKEI----GFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERD-DMHKGSAFA 326 (379)
T ss_dssp CCCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCH-HHHSSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCc-chHHHHHHH
Confidence 57888888888999987421 24688889999999999999999988765542 454444333222 223467888
Q ss_pred HCCceEEeecCCCc--cCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 420 KQNVAIVTVGFPAT--PLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 420 ~~Gi~v~~~~~~~~--~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
++||.+.+...+.. +...+++||+++..+|++||++++++|+++++++.
T Consensus 327 ~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 327 EAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp HTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999987432222 33468999999999999999999999999998764
No 152
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.95 E-value=4.1e-26 Score=228.14 Aligned_cols=318 Identities=14% Similarity=0.120 Sum_probs=225.5
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhh
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILP 179 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~ 179 (488)
..++|++ .+.+...+ +.+++.+.+... .++..+...++++.++++++.++++++++|++|+..++.
T Consensus 6 ~~~~~l~----~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~ 71 (374)
T 3uwc_A 6 VPYSYLE----RQFADIEP-YLNDLREFIKTA---------DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFK 71 (374)
T ss_dssp BCSCCHH----HHTSSCHH-HHHHHHHHHHHT---------CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH
T ss_pred ceeeccc----cCCCCchH-HHHHHHHHHHcC---------CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHH
Confidence 4456665 22222223 566666665542 123456779999999999999999999999999988888
Q ss_pred cc-cCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCC
Q 040324 180 VL-MGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSME 253 (488)
Q Consensus 180 ~~-~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~ 253 (488)
++ .++++.|+++.+.|+++...++..|.+++.++.+ |+++|++.+++ +..+|+ +.++.
T Consensus 72 ~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~-------------~~~~v~---~~n~~ 135 (374)
T 3uwc_A 72 MLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITD-------------KTKAIM---PVHYT 135 (374)
T ss_dssp HTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCT-------------TEEEEC---CBCGG
T ss_pred HcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCC-------------CceEEE---EeCCc
Confidence 88 8999999999999999999999999999999876 78888876643 233444 55678
Q ss_pred CCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccc--cccCCc--ccEEEeC-HHHHH
Q 040324 254 GELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGSY--GGYIAGS-KELIQ 328 (488)
Q Consensus 254 G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~s--K~~g~~--Gg~i~~~-~~~~~ 328 (488)
|.+.++++|+++|++||+++|+||+|+.|.. ..+. ..+.- .|+++.|++ |++|+. ||+++++ +++.+
T Consensus 136 G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~-~~~~----~~~~~---~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~ 207 (374)
T 3uwc_A 136 GNIADMPALAKIAKKHNLHIVEDACQTILGR-INDK----FVGSW---GQFACFSLHPLKNLNVWSDAGVIITHSDEYAE 207 (374)
T ss_dssp GCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTE----ETTSS---SSEEEEECSSSSSSCCSSCCEEEEESCHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCEEEEeCCCccCce-eCCe----ecccc---ccEEEEeCCCCCcCCccceeEEEEeCCHHHHH
Confidence 9999999999999999999999999985433 1111 12211 278888876 999873 4777764 56777
Q ss_pred HHHhhCCC----------CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC--CeecCCC
Q 040324 329 YLKYNCPA----------HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG--FEVLGDN 396 (488)
Q Consensus 329 ~~~~~~~~----------~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~ 396 (488)
.+...... ..+...+++..++..+..++ ..++..++.+++.+++++.|++++ +.+....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~---------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 278 (374)
T 3uwc_A 208 KLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMN---------QLETITEKRRGIAHLYDQSFVDLSEFIDVPVRR 278 (374)
T ss_dssp HHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGG---------GHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCC
T ss_pred HHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhccCCCeEEeccCC
Confidence 66654321 11222356666665555443 346678888899999999998875 5543222
Q ss_pred CC-----CeEEEEeCCcchHHHHHHHHHHCCceEEeec-CCCc--c-----------------CCCCeEEEeecCCCCHH
Q 040324 397 DS-----PVMPIMVYNPAKVSSFSRECLKQNVAIVTVG-FPAT--P-----------------LLLARARICISASHTKE 451 (488)
Q Consensus 397 ~~-----~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~--~-----------------~~~~~iRi~~~~~~t~e 451 (488)
.. ..+++... ...++.+.|.++||.+.+.. .+.. + ...+.+||+++..+|++
T Consensus 279 ~~~~~~~~~~~~~~~---~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~e 355 (374)
T 3uwc_A 279 EGVYHVFHIYVLRVK---YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEE 355 (374)
T ss_dssp TTEECCCSSEEEEET---THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHH
T ss_pred CCCceeeEEEEEEcC---CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHH
Confidence 11 22333332 46689999999999988632 1110 0 01168999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 040324 452 DLIEALEVISRIGDLV 467 (488)
Q Consensus 452 did~~l~~l~~~~~~~ 467 (488)
||++++++|++++++.
T Consensus 356 di~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 356 EINYIIKKVREFYLEK 371 (374)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 153
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.95 E-value=1.7e-25 Score=226.24 Aligned_cols=309 Identities=12% Similarity=0.116 Sum_probs=222.1
Q ss_pred CccchHHHHHHHHHcCC---CCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCC
Q 040324 117 DEYCTPRVIDSLKKYSH---STCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSL 193 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~---~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~ 193 (488)
++.+.+++.+.++.+.. .+..++ ...+...++++.+++++|.++++++++|++++..++.+++++||.|+++.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~ 109 (404)
T 1e5e_A 33 STFVFDNCQQGGNRFAGQESGYIYTR---LGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDEC 109 (404)
T ss_dssp SBCCCSSHHHHHHHHTTSSCSCCBTT---TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESC
T ss_pred CccccCCHHHHHHhhcCCcCCccccC---CcChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45566777666653211 111111 224566799999999999989999999999988888888899999999999
Q ss_pred CchHHHH----HHHhcCCeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHH-
Q 040324 194 NHNSIVN----GARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKR- 268 (488)
Q Consensus 194 ~h~~~~~----~~~~~g~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~- 268 (488)
.|+++.. .++..|.+++.++.+|+++|++.+++ ++.+|+++++.+++|.+.++++|.++|++
T Consensus 110 ~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-------------~t~~v~l~~p~NptG~v~~l~~i~~la~~~ 176 (404)
T 1e5e_A 110 LYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKP-------------NTKIVYFETPANPTLKIIDMERVCKDAHSQ 176 (404)
T ss_dssp CCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHTS
T ss_pred CchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-------------CCcEEEEECCCCCCCcccCHHHHHHHHHhh
Confidence 9999888 67788999999999899999887753 34567778999999999999999999999
Q ss_pred cCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCc----ccEEEeCHHHHH-HHHhhCCCCcccCCC
Q 040324 269 YKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSY----GGYIAGSKELIQ-YLKYNCPAHLYATSI 343 (488)
Q Consensus 269 ~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~----Gg~i~~~~~~~~-~~~~~~~~~~~~~~~ 343 (488)
||+++|+||+|+.+.+. . ..+ .++|+++.|+||+++++ ||++++++++++ .+......+ ++.+.
T Consensus 177 ~~~~li~De~~~~~~~~---~-~~~------~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~-~g~~~ 245 (404)
T 1e5e_A 177 EGVLVIADNTFCSPMIT---N-PVD------FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI-TGSVI 245 (404)
T ss_dssp TTCEEEEECTTTCTTTC---C-GGG------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC-CCCCC
T ss_pred cCCEEEEECCCchhhhC---C-ccc------cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC-CCCCC
Confidence 99999999999954432 1 111 23589999999999865 499999999888 777654432 13457
Q ss_pred CHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC-C--------------eecC---CCCCCeEEEEe
Q 040324 344 SPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG-F--------------EVLG---DNDSPVMPIMV 405 (488)
Q Consensus 344 ~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------------~~~~---~~~~~~~~~~~ 405 (488)
++..++++.++++.+ +.+.++..++.+.+.+.|++.. + .+.. ...+.++.+.+
T Consensus 246 ~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~ 316 (404)
T 1e5e_A 246 SPHDAWLITRGLSTL---------NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFIL 316 (404)
T ss_dssp CHHHHHHHHHHHTTH---------HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEE
T ss_pred CHHHHHHHHHhHhHH---------HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEe
Confidence 888888777777643 4566667777777777777653 1 1110 11256666665
Q ss_pred CCcchHHHHHHHHHHCCceEEeecCCC---------c------------cCC--CCeEEEeecCCCCHHHHHHHHHHHHH
Q 040324 406 YNPAKVSSFSRECLKQNVAIVTVGFPA---------T------------PLL--LARARICISASHTKEDLIEALEVISR 462 (488)
Q Consensus 406 ~~~~~~~~~~~~l~~~Gi~v~~~~~~~---------~------------~~~--~~~iRi~~~~~~t~edid~~l~~l~~ 462 (488)
... .....+.+.+.||.+....+.. . ..+ ++.+||++.. ||++++++.|++
T Consensus 317 ~~~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~ 390 (404)
T 1e5e_A 317 KSG--FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQ 390 (404)
T ss_dssp TTH--HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHH
T ss_pred CCC--HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHH
Confidence 432 2234444555598555332211 0 012 5799999965 899999999999
Q ss_pred HHHHh
Q 040324 463 IGDLV 467 (488)
Q Consensus 463 ~~~~~ 467 (488)
+++.+
T Consensus 391 al~~~ 395 (404)
T 1e5e_A 391 GLDAL 395 (404)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 154
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.95 E-value=9.8e-27 Score=234.51 Aligned_cols=328 Identities=13% Similarity=0.057 Sum_probs=222.3
Q ss_pred cceeEEeccccccCC---CCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh---C-----CCCeEE-
Q 040324 99 VSRCLNLGSYNYLGF---AAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV---G-----KPAAIV- 166 (488)
Q Consensus 99 g~~~ld~~s~~~lg~---~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~---g-----~~~~i~- 166 (488)
++++|||+++.|++. .+.+|.+.+++.+++++... ..++......++++.+++++ + .+++++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~ 98 (396)
T 2q7w_A 25 RPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT------KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA 98 (396)
T ss_dssp ---CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC------CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc------cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEE
Confidence 577899988776443 23468888888888765311 11223334589999999988 2 234555
Q ss_pred -eCCcHHHHhhhhhcc--cCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC---C----CHHHHHHHHHHHHhcCCCCCC
Q 040324 167 -FGMGYVTNSSILPVL--MGKGSLIISDSLNHNSIVNGARGSGATIRVFQH---N----TPSHLEEVLREQIAEGQPRTR 236 (488)
Q Consensus 167 -~~sGs~a~~~~~~~~--~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~---~----d~~~Le~~l~~~~~~~~p~~~ 236 (488)
+++|++++..++..+ ..+|+.|+++.|+|+.+...++..|.+++.++. + |+++|++.+++.
T Consensus 99 ~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--------- 169 (396)
T 2q7w_A 99 QTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA--------- 169 (396)
T ss_dssp EESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC---------
T ss_pred ecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhC---------
Confidence 677777887666554 368999999999999999999999999998887 4 788998887641
Q ss_pred CCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCC--CC-cchhcCCCCCCccEEEcccc
Q 040324 237 RPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTG--RG-VCELLGVDTSDVDIMMGTFS 310 (488)
Q Consensus 237 ~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g--~~-~~~~~~v~p~~~di~~~t~s 310 (488)
+.++.++++....+++|.+.+ +++|+++|++||++||+||+|+ .++.++ .. ....+... .+.++++.|+|
T Consensus 170 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~s 245 (396)
T 2q7w_A 170 -QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ--GFARGLEEDAEGLRAFAAM-HKELIVASSYS 245 (396)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT--TSSSCHHHHTHHHHHHHHH-CSCEEEEEECT
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc--cccCCccchhHHHHHHHhc-CCcEEEEEecc
Confidence 113556777888888898765 7789999999999999999999 555443 21 12212111 23468899999
Q ss_pred cccCCcc---cEEEe---CH----HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHH
Q 040324 311 KSFGSYG---GYIAG---SK----ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVI-GEDGSCRGAQKLARIRENSN 379 (488)
Q Consensus 311 K~~g~~G---g~i~~---~~----~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~-~~~~~~~~~~~~~~~~~~~~ 379 (488)
|++|.+| ||+++ ++ ++++.+...... .++ +.+++.++++.++|+... .+...++.++..++++++.+
T Consensus 246 K~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 323 (396)
T 2q7w_A 246 XNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRA-NYS-NPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQ 323 (396)
T ss_dssp TTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHT-TTS-SCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHH
T ss_pred ccccccccccceEEEEcCCHHHHHHHHHHHHHHHhh-ccC-CCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999777 99886 56 455555432211 222 247777777777765320 00001145667788899999
Q ss_pred HHHHHHHhCC----CeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHH
Q 040324 380 FFRSKLQKMG----FEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIE 455 (488)
Q Consensus 380 ~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~ 455 (488)
++.+.|++.+ +.+..+.++.++++.+ + ...+.+.|.++||.+.+ .+||+++. .|++++++
T Consensus 324 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~l~~~gv~v~~-----------~~Ris~~~-~~~e~i~~ 387 (396)
T 2q7w_A 324 LFVNTLQEKGANRDFSFIIKQNGMFSFSGL--T--KEQVLRLREEFGVYAVA-----------SGRVNVAG-MTPDNMAP 387 (396)
T ss_dssp HHHHHHHHTTCCSCCTHHHHCCSSEEECCC--C--HHHHHHHHHHHCEECCT-----------TCEEEGGG-CCTTTHHH
T ss_pred HHHHHHHhcCCCCCcceecCCCceEEEecC--C--HHHHHHHHHhcCeeecC-----------CceEEEee-cCHHHHHH
Confidence 9999999987 6655554455544332 1 23455556677999873 26999974 49999999
Q ss_pred HHHHHHHH
Q 040324 456 ALEVISRI 463 (488)
Q Consensus 456 ~l~~l~~~ 463 (488)
++++|+++
T Consensus 388 ~~~~l~~~ 395 (396)
T 2q7w_A 388 LCEAIVAV 395 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999875
No 155
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.95 E-value=2.6e-26 Score=236.62 Aligned_cols=322 Identities=11% Similarity=0.049 Sum_probs=227.9
Q ss_pred CCCCccchHHHHHHHHHcCCCCCCcc--cCCCChhhHHHHHHHHHHHhCCC-CeEEeCC-cHHHHhhhhhcccCC---Cc
Q 040324 114 AAADEYCTPRVIDSLKKYSHSTCSSR--VDGGTLALHNELEECVARFVGKP-AAIVFGM-GYVTNSSILPVLMGK---GS 186 (488)
Q Consensus 114 ~~~~~~v~~a~~~~l~~~~~~~~~~~--~~~g~~~~~~~l~~~la~~~g~~-~~i~~~s-Gs~a~~~~~~~~~~~---~~ 186 (488)
+..++.+.+++.++++.++....... ...+..+..+++++.+++++|.+ +.+++++ +++++..++.++..+ ++
T Consensus 77 g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~ 156 (465)
T 3e9k_A 77 GLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRY 156 (465)
T ss_dssp CCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSC
T ss_pred CCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCC
Confidence 34467788888888876542211111 11133455688999999999975 4455555 445556677777544 45
Q ss_pred EEEEeCCCchHHHH----HHHhcCCeE-----EEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCC
Q 040324 187 LIISDSLNHNSIVN----GARGSGATI-----RVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSM 252 (488)
Q Consensus 187 ~Vl~~~~~h~~~~~----~~~~~g~~v-----~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~ 252 (488)
.|+++.+.|++... .++..|.++ ...+.+ |++++++.++++. .++++|++++++++
T Consensus 157 ~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~----------~~~~lv~~~~~~n~ 226 (465)
T 3e9k_A 157 KILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEG----------DSIAVILFSGVHFY 226 (465)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHG----------GGEEEEEEESBCTT
T ss_pred EEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcC----------CCeEEEEEeCcccC
Confidence 69999999998654 455567764 233332 7999999997531 15678888999999
Q ss_pred CCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccC-C-cc-cEEEeCHHHHHH
Q 040324 253 EGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG-S-YG-GYIAGSKELIQY 329 (488)
Q Consensus 253 ~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g-~-~G-g~i~~~~~~~~~ 329 (488)
+|.+.++++|.++|++||+++|+|++|+.|.... ++...++|++++|++|.++ + .| |+++.++++.+.
T Consensus 227 tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~---------~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~ 297 (465)
T 3e9k_A 227 TGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVEL---------YLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHT 297 (465)
T ss_dssp TCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC---------CHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTT
T ss_pred cceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCC---------chhhcCCCEEEECcccccccCCCceEEEEEcHHHHhh
Confidence 9999999999999999999999999998554321 1111245899999999993 4 34 888888887665
Q ss_pred HHhhCCCC---------------cc--------cCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Q 040324 330 LKYNCPAH---------------LY--------ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQ 386 (488)
Q Consensus 330 ~~~~~~~~---------------~~--------~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 386 (488)
+.....++ .+ ..+.++..+++..++++.+... ..++++++..++.+++.+.|+
T Consensus 298 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~----~~~~~~~~~~~~~~~l~~~L~ 373 (465)
T 3e9k_A 298 IKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQA----TMKALRKKSVLLTGYLEYLIK 373 (465)
T ss_dssp SCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHHHH
Confidence 43221110 00 1146777888888888887421 257888999999999999998
Q ss_pred h-----------CCCeecCCC----CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEee-cCCCCH
Q 040324 387 K-----------MGFEVLGDN----DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICI-SASHTK 450 (488)
Q Consensus 387 ~-----------~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~-~~~~t~ 450 (488)
+ .|+.+..+. .+.++++.+. ....++.+.|.++||.+.. ...+++||++ +..+|+
T Consensus 374 ~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~--~~~~~l~~~L~~~Gi~v~~-------~~~~~iRis~~~~~~t~ 444 (465)
T 3e9k_A 374 HNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS--VPNKDVFQELEKRGVVCDK-------RNPNGIRVAPVPLYNSF 444 (465)
T ss_dssp HHCC---------CEEECSCSSGGGBCSCEEEEEC--CTTCCHHHHHHTTTEECEE-------ETTTEEEEBCCTTTCCH
T ss_pred hhccccccccCCCCeEEeCCCCHhhcccEEEEEec--CCHHHHHHHHHHCCEEEec-------CCCCEEEEeCcccCCCH
Confidence 8 577777654 2567777665 3345788999999999873 1237899998 899999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040324 451 EDLIEALEVISRIGDLV 467 (488)
Q Consensus 451 edid~~l~~l~~~~~~~ 467 (488)
+|+++++++|++++++.
T Consensus 445 edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 445 HDVYKFTNLLTSILDSA 461 (465)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998654
No 156
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.95 E-value=7.6e-26 Score=227.76 Aligned_cols=307 Identities=16% Similarity=0.206 Sum_probs=223.0
Q ss_pred CccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcc-cCCCcEEEEeCCCc
Q 040324 117 DEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL-MGKGSLIISDSLNH 195 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~-~~~~~~Vl~~~~~h 195 (488)
++.+.+++.+++... . + .+..+...++++.+|++++.++++++++|++|+..++.++ .++++.|+++.+.|
T Consensus 35 ~~~~~~a~~~~~~~~-~-~------~~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~ 106 (391)
T 3dr4_A 35 DGNERDYVLECMDTT-W-I------SSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTY 106 (391)
T ss_dssp CSSHHHHHHHHHHHT-C-C------SSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHHcC-C-c------cCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCch
Confidence 577788888877652 1 1 1245677999999999999999999999999998888888 89999999999999
Q ss_pred hHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHc
Q 040324 196 NSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRY 269 (488)
Q Consensus 196 ~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~ 269 (488)
+++...++..|.+++.++.+ |+++|++.+++ +..+|++ .++.|.+.++++|+++|++|
T Consensus 107 ~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~-------------~~~~v~~---~n~tG~~~~~~~i~~l~~~~ 170 (391)
T 3dr4_A 107 IASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITP-------------RTKAIMP---VHLYGQICDMDPILEVARRH 170 (391)
T ss_dssp THHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCT-------------TEEEECC---BCGGGCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCC-------------CceEEEE---ECCCCChhhHHHHHHHHHHc
Confidence 99999999999999998865 77888776643 2334443 34678889999999999999
Q ss_pred CcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccc--cccCC-cccEEEeC-HHHHHHHHhhCC-CCc------
Q 040324 270 KAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGS-YGGYIAGS-KELIQYLKYNCP-AHL------ 338 (488)
Q Consensus 270 g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~s--K~~g~-~Gg~i~~~-~~~~~~~~~~~~-~~~------ 338 (488)
|++||+||+|+.|... .+. ..+.-+ |+.+.||+ |++++ .||+++.+ +++.+.+..... +..
T Consensus 171 ~~~li~D~a~~~g~~~-~~~----~~~~~~---di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 242 (391)
T 3dr4_A 171 NLLVIEDAAEAVGATY-RGK----KSGSLG---DCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYW 242 (391)
T ss_dssp TCEEEEECTTCTTCEE-TTE----ETTSSS---SEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTC
T ss_pred CCEEEEECcccccceE-CCe----eecccC---CEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCCCccc
Confidence 9999999999854432 111 111112 56666755 99975 23777665 567666654221 100
Q ss_pred -----ccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCC--C-----CCCeEEEEeC
Q 040324 339 -----YATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD--N-----DSPVMPIMVY 406 (488)
Q Consensus 339 -----~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~-----~~~~~~~~~~ 406 (488)
+...+++..++.++..++. .++..++.+++.+++++.|+++|+.+... . ...++++.+.
T Consensus 243 ~~~~g~~~~~~~l~aa~~~~~~~~---------~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~ 313 (391)
T 3dr4_A 243 FPIVGFNYRMTNIQAAIGLAQLER---------VDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLG 313 (391)
T ss_dssp CSSCCCBCBCCHHHHHHHHHHHHT---------HHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEEC
T ss_pred ccccccccCCCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEEC
Confidence 1134677776666655543 36678888999999999999888766544 1 1235677776
Q ss_pred C--cchHHHHHHHHHHCCceEEeecCCCc--c---------------CCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 407 N--PAKVSSFSRECLKQNVAIVTVGFPAT--P---------------LLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 407 ~--~~~~~~~~~~l~~~Gi~v~~~~~~~~--~---------------~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
. .....++.+.|.++||.+.+...|.. + .....+|++++..+|+||||+++++|++++
T Consensus 314 ~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 314 EGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp SSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred CccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 5 44577899999999999986432210 0 013579999999999999999999998753
No 157
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=1.5e-25 Score=225.41 Aligned_cols=284 Identities=10% Similarity=0.116 Sum_probs=212.2
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHH----HhcCCeEEEeeCCCHHH
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGA----RGSGATIRVFQHNTPSH 219 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~----~~~g~~v~~~~~~d~~~ 219 (488)
..+...+++++++++++.++.+++++|++++..+++++.++++.|+++.+.|+++.... +..|.++..++.+|+++
T Consensus 50 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~ 129 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQA 129 (386)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHH
T ss_pred CCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHH
Confidence 34667899999999999888999999999998888888899999999999999866543 56688999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT 299 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p 299 (488)
|++.+++ +..+|+++++++++|.+.++++|+++|++||+++|+||+|+.+.+. . .. .
T Consensus 130 l~~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~---~-~~---~--- 186 (386)
T 1cs1_A 130 LRAALAE-------------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ---N-PL---A--- 186 (386)
T ss_dssp HHHHHHT-------------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC---C-GG---G---
T ss_pred HHHhhcc-------------CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC---C-cc---c---
Confidence 9998874 3456777899999999999999999999999999999999844332 1 11 1
Q ss_pred CCccEEEcccccccCCcc----cEEEeCH-HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q 040324 300 SDVDIMMGTFSKSFGSYG----GYIAGSK-ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARI 374 (488)
Q Consensus 300 ~~~di~~~t~sK~~g~~G----g~i~~~~-~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~ 374 (488)
.++|+++.|++|+++++| |++++++ ++++.+......+ +.+.++..++++.++++.+ ....+++
T Consensus 187 ~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~---------~~~~~~~ 255 (386)
T 1cs1_A 187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI--GVTGGAFDSYLLLRGLRTL---------VPRMELA 255 (386)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH--TCBCCHHHHHHHHHHHTTH---------HHHHHHH
T ss_pred cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhcccHH---------HHHHHHH
Confidence 234899999999997644 8888875 8888877654332 3347888877776666543 4566777
Q ss_pred HHHHHHHHHHHHhCCC-e-ecC----------------CCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCC-----
Q 040324 375 RENSNFFRSKLQKMGF-E-VLG----------------DNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFP----- 431 (488)
Q Consensus 375 ~~~~~~l~~~L~~~g~-~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~----- 431 (488)
.++.+.+.+.|++++. . +.. ...++++.+.+... ...+.+.|.++||.+....+.
T Consensus 256 ~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~~~~~~~g~~~sl 333 (386)
T 1cs1_A 256 QRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD--EQTLRRFLGGLSLFTLAESLGGVESL 333 (386)
T ss_dssp HHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC--HHHHHHHHHTCSSSEEBSCCCSSSCE
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC--HHHHHHHHHhCCcceEcccCCCccee
Confidence 8888888888877531 1 100 11256777776533 456777788889988742111
Q ss_pred ----C------c--------cCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 432 ----A------T--------PLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 432 ----~------~--------~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
. . ....+.+||+++...++++++.+.++|+++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 334 ISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp EEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 0 0 112479999999888888888888777664
No 158
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.95 E-value=2.5e-26 Score=235.31 Aligned_cols=343 Identities=12% Similarity=0.053 Sum_probs=228.5
Q ss_pred ceeE-EeccccccCCCCCCccchHHHHHHHHHcCCC-------CC--CcccCCCChhhHHHHHHHHHHHh------CC--
Q 040324 100 SRCL-NLGSYNYLGFAAADEYCTPRVIDSLKKYSHS-------TC--SSRVDGGTLALHNELEECVARFV------GK-- 161 (488)
Q Consensus 100 ~~~l-d~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~-------~~--~~~~~~g~~~~~~~l~~~la~~~------g~-- 161 (488)
..+| ||+ .|.+..+|.+.+++.+++.+.... .. .....++......++++.+|+++ +.
T Consensus 31 ~~~i~~l~----~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~ 106 (444)
T 3if2_A 31 DQPVNMLG----GGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTS 106 (444)
T ss_dssp SSCCEECS----CCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG
T ss_pred chhhhccC----CCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCH
Confidence 4567 876 333333466677777777664322 10 01122333344578999999987 22
Q ss_pred CCeEEeCCcHHHHhhhhhcccCCCc--------------EEEE-eCCCchHHHHH------HHhcCCeEEEeeC------
Q 040324 162 PAAIVFGMGYVTNSSILPVLMGKGS--------------LIIS-DSLNHNSIVNG------ARGSGATIRVFQH------ 214 (488)
Q Consensus 162 ~~~i~~~sGs~a~~~~~~~~~~~~~--------------~Vl~-~~~~h~~~~~~------~~~~g~~v~~~~~------ 214 (488)
++++++++|++++..++.++.++++ .|++ ..+.|..+... +...+..+..++.
T Consensus 107 ~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 186 (444)
T 3if2_A 107 ENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGF 186 (444)
T ss_dssp GGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEE
T ss_pred HHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCc
Confidence 4677777777888888888888887 6665 48888877653 2334666666662
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCC
Q 040324 215 ----NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKT 287 (488)
Q Consensus 215 ----~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~ 287 (488)
-|+++|++.+++. . + ++.+|++..+++++|.+.+ +++|+++|++||++||+||+|+.+.-+..
T Consensus 187 ~~~~~d~~~l~~~l~~~-~--------~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~ 256 (444)
T 3if2_A 187 FKYRVDFEALENLPALK-E--------G-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNII 256 (444)
T ss_dssp EEEECCHHHHHTCHHHH-T--------T-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCB
T ss_pred cccCCCHHHHHHHHHhc-C--------C-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccc
Confidence 2889998876431 0 1 3345555566788999888 89999999999999999999973211110
Q ss_pred CCCcchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCC
Q 040324 288 GRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGS 364 (488)
Q Consensus 288 g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~ 364 (488)
.... .....+.+++++||||. +.+| ||+++++++++.+.......+++ .++..++++.+.++... ..
T Consensus 257 ~~~~----~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~---~~ 326 (444)
T 3if2_A 257 YSDA----HLNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNLA--PTRFGAAIATPLVANDR---IK 326 (444)
T ss_dssp CSCC----CCCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHTSH---HH
T ss_pred cccc----cccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccCC--CChHHHHHHHHHHHcCc---hh
Confidence 0110 01124568889999997 6656 99999999999887655433333 66666666666665321 00
Q ss_pred chHHH-HHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCC-cchHHHHHHHHHHCCceEEeecCCC-c----
Q 040324 365 CRGAQ-KLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYN-PAKVSSFSRECLKQNVAIVTVGFPA-T---- 433 (488)
Q Consensus 365 ~~~~~-~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~~~~-~---- 433 (488)
....+ +.++++++.+.+.+.|++. ++.+..+..+.++++.+.. .....++.+.|.++||.+.+..... .
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~ 406 (444)
T 3if2_A 327 QLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVS 406 (444)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCc
Confidence 01122 5566777777887777653 5666666677888888765 4567789999999999999743211 1
Q ss_pred --cCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 434 --PLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 434 --~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
+...+++||+++. |+++|++++++|.++++++.
T Consensus 407 ~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 407 DYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp TCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHH
Confidence 1123689999965 99999999999999988763
No 159
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.95 E-value=2.6e-26 Score=233.69 Aligned_cols=303 Identities=13% Similarity=0.032 Sum_probs=215.0
Q ss_pred hHHHHHHHHHHHhCCC-CeEEeCCcHH-HH--hhhhhcccCC------------CcEEEEeCCCchHHHHHHHhcCCeEE
Q 040324 147 LHNELEECVARFVGKP-AAIVFGMGYV-TN--SSILPVLMGK------------GSLIISDSLNHNSIVNGARGSGATIR 210 (488)
Q Consensus 147 ~~~~l~~~la~~~g~~-~~i~~~sGs~-a~--~~~~~~~~~~------------~~~Vl~~~~~h~~~~~~~~~~g~~v~ 210 (488)
...+|++.+|++++.+ +.+++++|+. ++ ..++.++..+ ++.|+++.|+|+.+...++..|++++
T Consensus 77 G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~ 156 (422)
T 3d6k_A 77 GIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMI 156 (422)
T ss_dssp CCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEE
Confidence 3589999999999875 5566666655 44 3445555544 34799999999999999999999998
Q ss_pred EeeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChH---HHHHHHH-HcCcEEEEEcccccc
Q 040324 211 VFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLP---EIITICK-RYKAYTYLDEAHSIG 282 (488)
Q Consensus 211 ~~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~---~l~~l~~-~~g~~li~DE~~s~g 282 (488)
.++.+ |+++|++.+++. ..++++++...++++|.+.+.+ +|+++|+ +||+++|+||+|+.+
T Consensus 157 ~v~~~~~g~d~~~l~~~l~~~-----------~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~ 225 (422)
T 3d6k_A 157 NVPMTDEGPDMGVVRELVKDP-----------QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALH 225 (422)
T ss_dssp EEEEETTEECHHHHHHHHTST-----------TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTC
T ss_pred ecCCCCCCCCHHHHHHHHhcC-----------CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCcccc
Confidence 88863 788888877531 1344444678899999988755 8888888 999999999999855
Q ss_pred ccCCCCCCcchhcC----CCCCCccEEEcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHH
Q 040324 283 AVGKTGRGVCELLG----VDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAI 355 (488)
Q Consensus 283 ~~g~~g~~~~~~~~----v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L 355 (488)
.++..+........ .+..+.+++++||||. +.+| ||+++++++++.+......+++ +.+++.++++.++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~l~~~l~~~~~~~~~--~~~~~~q~a~~~~l 302 (422)
T 3d6k_A 226 TLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSKENIEWYASHANVRGI--GPNKLNQLAHAQFF 302 (422)
T ss_dssp BSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHHHHCS--CCCHHHHHHHHHHH
T ss_pred ccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHH
Confidence 56554432211111 1224458899999998 5555 9999999999988765443233 37788777777666
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHHHHHHHHh----CC-CeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeec-
Q 040324 356 QVVIGEDGSCRGAQKLARIRENSNFFRSKLQK----MG-FEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVG- 429 (488)
Q Consensus 356 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~- 429 (488)
+.. +...++.++.++.++++.+++.+.|++ .| +.+..+.++.++++.+... ....+.+.|.++||.+.+.+
T Consensus 303 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-~~~~~~~~l~~~gV~v~~~g~ 379 (422)
T 3d6k_A 303 GDV--AGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-TASRVVELAKEAGIALTGAGS 379 (422)
T ss_dssp CSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-CHHHHHHHHHHTTEECCCTTT
T ss_pred hCc--chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-CHHHHHHHHHHCCeEEEcCcc
Confidence 421 000124556677777788877777765 34 4655666678888887643 45678888889999998733
Q ss_pred -CCCcc-CCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 430 -FPATP-LLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 430 -~~~~~-~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
|+..+ .+.+++||+++. .|++++++++++|+++++++
T Consensus 380 ~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 380 SFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp TSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 32111 235799999966 89999999999999998765
No 160
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.95 E-value=1.8e-26 Score=230.93 Aligned_cols=304 Identities=16% Similarity=0.117 Sum_probs=217.6
Q ss_pred ccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcc-cCCCcEEEEeCCCch
Q 040324 118 EYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL-MGKGSLIISDSLNHN 196 (488)
Q Consensus 118 ~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~-~~~~~~Vl~~~~~h~ 196 (488)
+.+.+++.++++... ++..+...++++.+|++++.++++++++|++|+..++.++ .++|+.|+++.+.|+
T Consensus 17 ~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~ 87 (373)
T 3frk_A 17 YEIKFKFEEIYKRNW---------FILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFI 87 (373)
T ss_dssp HHHHHHHHHHHHHTC---------CSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCT
T ss_pred HHHHHHHHHHHHCCC---------ccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcH
Confidence 455555555555421 1345677999999999999999999999999998888888 899999999999999
Q ss_pred HHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcC
Q 040324 197 SIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK 270 (488)
Q Consensus 197 ~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g 270 (488)
++...++..|++++.++.+ |+++|++.+++ +..+|+ +.++.|.+.++++|.++|++||
T Consensus 88 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~-------------~~~~v~---~~n~~G~~~~l~~i~~l~~~~~ 151 (373)
T 3frk_A 88 ATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE-------------KTKAII---AVHLYGQPADMDEIKRIAKKYN 151 (373)
T ss_dssp HHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCT-------------TEEEEE---EECCTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCC-------------CCeEEE---EECCCcCcccHHHHHHHHHHcC
Confidence 9999999999999988865 78888877653 233444 4467899999999999999999
Q ss_pred cEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccc--cccCC--cccEEEeC-HHHHHHHHhhCCC---------
Q 040324 271 AYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGS--YGGYIAGS-KELIQYLKYNCPA--------- 336 (488)
Q Consensus 271 ~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~s--K~~g~--~Gg~i~~~-~~~~~~~~~~~~~--------- 336 (488)
++||+||+|+.|.. ..++ ..+.- .|+++.||+ |++|+ .||+++++ +++.+.++.....
T Consensus 152 ~~li~D~a~~~g~~-~~~~----~~~~~---~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 223 (373)
T 3frk_A 152 LKLIEDAAQAHGSL-YKGM----KVGSL---GDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHI 223 (373)
T ss_dssp CEEEEECTTCTTCE-ETTE----ETTSS---SSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCC
T ss_pred CEEEEECCcccCCE-ECCE----ecccc---ccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCccc
Confidence 99999999986544 2222 12211 378888877 99986 24787775 5676666542211
Q ss_pred -CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCC-C----CeEEEEeCCcch
Q 040324 337 -HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND-S----PVMPIMVYNPAK 410 (488)
Q Consensus 337 -~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~----~~~~~~~~~~~~ 410 (488)
..+...+++..++.++..++. .++..++.+++.+++++.|+++++.+..... + ..+++... .
T Consensus 224 ~~g~~~~~~~~~aa~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 291 (373)
T 3frk_A 224 YKGFNSRLDELQAGFLRVKLKY---------LDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE---K 291 (373)
T ss_dssp SCCCBCCCCHHHHHHHHHHHHT---------HHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES---S
T ss_pred cccccCCCCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC---C
Confidence 012234677777766665553 3567788888999999999887743322111 1 23344332 4
Q ss_pred HHHHHHHHHHCCceEEeec-CCCc--c--------C---------CCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 411 VSSFSRECLKQNVAIVTVG-FPAT--P--------L---------LLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 411 ~~~~~~~l~~~Gi~v~~~~-~~~~--~--------~---------~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
..++.+.|.++||.+.+.. .|.. + . ....+|++++..+|++|+|+++++|++...+
T Consensus 292 ~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 292 RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 6689999999999988532 1110 0 0 1168999999999999999999999876544
No 161
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.95 E-value=1.3e-25 Score=226.68 Aligned_cols=285 Identities=14% Similarity=0.168 Sum_probs=213.4
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHH----HhcCCeEEEeeCCCHHH
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGA----RGSGATIRVFQHNTPSH 219 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~----~~~g~~v~~~~~~d~~~ 219 (488)
..+...++++.+++++|.++++++++|++|+..++.++.++++.|+++.+.|+++...+ ...|.++..++.+|+++
T Consensus 63 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~ 142 (398)
T 1gc0_A 63 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQA 142 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHH
Confidence 45778999999999999999999999999998888888899999999999999987765 56689999999889999
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT 299 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p 299 (488)
+++.+++ ++.+|+++++.+++|.+.++++|+++|++||+++|+||+|+.+.++. . ..
T Consensus 143 l~~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~---~----~~--- 199 (398)
T 1gc0_A 143 LEAAMTP-------------ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR---P----LE--- 199 (398)
T ss_dssp HHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC---G----GG---
T ss_pred HHHhcCC-------------CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCC---c----hh---
Confidence 9887753 45677788999999999999999999999999999999998655431 1 11
Q ss_pred CCccEEEcccccccCCc----ccEEEeCHHHHH-HHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q 040324 300 SDVDIMMGTFSKSFGSY----GGYIAGSKELIQ-YLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARI 374 (488)
Q Consensus 300 ~~~di~~~t~sK~~g~~----Gg~i~~~~~~~~-~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~ 374 (488)
.++|+++.|++|.+|++ ||+++++++.++ .+...... .++.+.+|..+++++++++.+ ....++.
T Consensus 200 ~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~ 269 (398)
T 1gc0_A 200 LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD-MTGAVLSPHDAALLMRGIKTL---------NLRMDRH 269 (398)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH-HTCCCCCHHHHHHHHHHHTTH---------HHHHHHH
T ss_pred hCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc-cCCCCCCHHHHHHHHhccchH---------HHHHHHH
Confidence 23589999999999864 589999987765 45433221 133457888888877777643 5567777
Q ss_pred HHHHHHHHHHHHhCC---------------CeecCC---CCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecC------
Q 040324 375 RENSNFFRSKLQKMG---------------FEVLGD---NDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGF------ 430 (488)
Q Consensus 375 ~~~~~~l~~~L~~~g---------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------ 430 (488)
.++.+.+.+.|++.+ +.+..+ ..++++.+.+... .....+.+.+.|+.+....+
T Consensus 270 ~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~l~~~~i~~~~~s~G~~~sl 347 (398)
T 1gc0_A 270 CANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG--IGAGRRFMNALQLFSRAVSLGDAESL 347 (398)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH--HHHHHHHHHHCSSSEECSCCSCSSCE
T ss_pred HHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC--HHHHHHHHHhCCCceeccCCCCccee
Confidence 888888888887742 111111 2457777766432 23455556666888764221
Q ss_pred ---CC------c--------cCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 431 ---PA------T--------PLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 431 ---~~------~--------~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
|. . ....+.+||+++...++++++.+.++|+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 348 AQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp EECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 11 0 012479999999999999999999998764
No 162
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.95 E-value=3.7e-25 Score=224.80 Aligned_cols=317 Identities=16% Similarity=0.198 Sum_probs=226.8
Q ss_pred CccchHHHHHHHHHcCCC-CCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcc-cCCCcEEEEeCCC
Q 040324 117 DEYCTPRVIDSLKKYSHS-TCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL-MGKGSLIISDSLN 194 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~~-~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~-~~~~~~Vl~~~~~ 194 (488)
+|.+.+++.+++++...+ +. ...|..+...++++.+++++|.++++++++|++++..++.++ .++|+.|+++.+.
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~---~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~ 91 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISG---YWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLT 91 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTS---BCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHhcCCccccC---cccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCc
Confidence 578899999998874322 21 234566667999999999999988999999999998888888 7899999999999
Q ss_pred chHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHH
Q 040324 195 HNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKR 268 (488)
Q Consensus 195 h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~ 268 (488)
|.++...++..|.+++.++.+ |+++|++.+++ ++.+|++. ++.|.+.++++|.++|++
T Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-------------~~~~v~~~---~~~G~~~~~~~i~~~~~~ 155 (418)
T 2c81_A 92 WIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITD-------------KTKAIIPV---HLFGSMANMDEINEIAQE 155 (418)
T ss_dssp CTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT-------------TEEEECCB---CCTTCCCCHHHHHHHHHH
T ss_pred cHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC-------------CCeEEEEe---CCcCCcccHHHHHHHHHH
Confidence 999999999999999988864 67777776643 23344433 357888999999999999
Q ss_pred cCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEccc--ccccCC-cccEEEe-CHHHHHHHHhhCCC--------
Q 040324 269 YKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTF--SKSFGS-YGGYIAG-SKELIQYLKYNCPA-------- 336 (488)
Q Consensus 269 ~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~--sK~~g~-~Gg~i~~-~~~~~~~~~~~~~~-------- 336 (488)
||++||+||+|+.+.. ..+.. .+.-+ |+.+.|| +|.+|+ .||++++ ++++++.+......
T Consensus 156 ~~~~li~D~a~~~~~~-~~~~~----~~~~~---~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 227 (418)
T 2c81_A 156 HNLFVIEDCAQSHGSV-WNNQR----AGTIG---DIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDS 227 (418)
T ss_dssp TTCEEEEECTTCTTCE-ETTEE----TTSSS---SEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCG
T ss_pred CCCEEEEECcccccCc-cCCEe----ccccc---ceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccc
Confidence 9999999999996542 12221 11111 4666677 999987 3488888 47887777542211
Q ss_pred ------Cc----------ccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCC-C-
Q 040324 337 ------HL----------YATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDN-D- 397 (488)
Q Consensus 337 ------~~----------~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~- 397 (488)
+. ++..+++..++.....++ ..++..++.+++.+++.+.|+++ |+.+..+. +
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~---------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 298 (418)
T 2c81_A 228 SELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQ---------ELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQV 298 (418)
T ss_dssp GGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTE
T ss_pred cccccchhhccccccccCcCCCcCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC
Confidence 11 011134444443333333 34667788888899999999887 77776332 2
Q ss_pred ---C-CeEEEEeCC----cchHHHHHHHHHHC-Cce---EEeecCCCc--cC----------------------C-----
Q 040324 398 ---S-PVMPIMVYN----PAKVSSFSRECLKQ-NVA---IVTVGFPAT--PL----------------------L----- 436 (488)
Q Consensus 398 ---~-~~~~~~~~~----~~~~~~~~~~l~~~-Gi~---v~~~~~~~~--~~----------------------~----- 436 (488)
. +++++.+.. .....++.+.|.++ ||. +.+...|.. +. +
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (418)
T 2c81_A 299 SRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVS 378 (418)
T ss_dssp EECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHH
T ss_pred cccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHH
Confidence 2 355566643 33567899999999 999 775322211 00 0
Q ss_pred ----CCeEEEeecCCC-CHHHHHHHHHHHHHHHHHhCC
Q 040324 437 ----LARARICISASH-TKEDLIEALEVISRIGDLVGI 469 (488)
Q Consensus 437 ----~~~iRi~~~~~~-t~edid~~l~~l~~~~~~~~~ 469 (488)
.+.+||+++..+ |+||+++++++|+++++++++
T Consensus 379 ~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~~ 416 (418)
T 2c81_A 379 ERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFCV 416 (418)
T ss_dssp HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhcc
Confidence 158999999999 999999999999999887643
No 163
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.95 E-value=7.3e-26 Score=222.58 Aligned_cols=278 Identities=14% Similarity=0.164 Sum_probs=208.0
Q ss_pred HHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHH----HhcCCeEEEeeCCCHHHHHHHHH
Q 040324 150 ELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGA----RGSGATIRVFQHNTPSHLEEVLR 225 (488)
Q Consensus 150 ~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~----~~~g~~v~~~~~~d~~~Le~~l~ 225 (488)
++++.+|+++|.++++++++|++++..++.++.++++.|+++.+.|+++...+ +..|.++..++..|++++++.++
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~ 81 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK 81 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence 68999999999989999999999998888888889999999999999987765 34789999999889999888775
Q ss_pred HHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHH-cCcEEEEEccccccccCCCCCCcchhcCCCCCCccE
Q 040324 226 EQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKR-YKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDI 304 (488)
Q Consensus 226 ~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~-~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di 304 (488)
+ ++.+|+++++++++|.+.++++|.++|++ +|+++|+||+|+.|.+.. .. + .++|+
T Consensus 82 ~-------------~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~---~~-~------~~~d~ 138 (331)
T 1pff_A 82 P-------------NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN---PL-D------LGVDI 138 (331)
T ss_dssp T-------------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC---GG-G------GTCSE
T ss_pred C-------------CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC---hh-h------cCCcE
Confidence 3 34577778999999999999999999999 999999999998655421 11 1 23589
Q ss_pred EEcccccccCCc----ccEEEeCH-HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 040324 305 MMGTFSKSFGSY----GGYIAGSK-ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSN 379 (488)
Q Consensus 305 ~~~t~sK~~g~~----Gg~i~~~~-~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~ 379 (488)
++.|++|++|++ +|++++++ ++++.++.....+ ++.+.++..++++.++++.+ ....++..++.+
T Consensus 139 ~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~ 208 (331)
T 1pff_A 139 VVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI-TGAIISPHDAWLITRGTLTL---------DMRVKRAAENAQ 208 (331)
T ss_dssp EEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC-CCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred EEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh-cCCCCCHHHHHHHHcCcchH---------HHHHHHHHHHHH
Confidence 999999999864 58999998 9999888765541 23347887777766777654 334455556666
Q ss_pred HHHHHHHhC---------------CCeecC---CCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecC---------CC
Q 040324 380 FFRSKLQKM---------------GFEVLG---DNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGF---------PA 432 (488)
Q Consensus 380 ~l~~~L~~~---------------g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------~~ 432 (488)
.+.+.|++. ++.+.. ...++++.+.+. ...++.+.|.++||.+..... +.
T Consensus 209 ~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~ 285 (331)
T 1pff_A 209 KVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD---GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPA 285 (331)
T ss_dssp HHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS---SHHHHHHHHHTCSSSEECSSCCSSSCEEECHH
T ss_pred HHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC---CHHHHHHHHHhCCCceeccCCCCcceeeecch
Confidence 666666543 111111 113567777665 345677778888998875421 11
Q ss_pred c--------------cCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 433 T--------------PLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 433 ~--------------~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
. ....+.+|++++..+|++++++++++|+++
T Consensus 286 ~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 286 SMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred hhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 0 112479999999999999999999998754
No 164
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.94 E-value=2.1e-25 Score=221.54 Aligned_cols=321 Identities=9% Similarity=0.040 Sum_probs=228.6
Q ss_pred eEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC---CeEEeCCcHHHHhhhh
Q 040324 102 CLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP---AAIVFGMGYVTNSSIL 178 (488)
Q Consensus 102 ~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~~~~ 178 (488)
.++|. -|....++.+.+++.+++.+...... .......+...++++.+++++|.+ .++++++|++++..++
T Consensus 5 ~~~~~----p~p~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~ 78 (362)
T 3ffr_A 5 KIYFT----PGPSELYPTVRQHMITALDEKIGVIS--HRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERII 78 (362)
T ss_dssp CEEEC----SSSCCCCTTHHHHHHHHHHTTTTTSC--TTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHH
T ss_pred ceecc----CCCcCCCHHHHHHHHHHhcCCccCcC--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHH
Confidence 45554 33333468889888888866321111 111123356688999999999863 3666677888888888
Q ss_pred hcccCCCcEEEEeCCCchHH-HHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCC
Q 040324 179 PVLMGKGSLIISDSLNHNSI-VNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSM 252 (488)
Q Consensus 179 ~~~~~~~~~Vl~~~~~h~~~-~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~ 252 (488)
.++..+ +.+++..+.|+.. ...++..|.+++.++.+ |+++|+ +. +.++ +|++.++.++
T Consensus 79 ~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~------------~~~~-~v~~~~~~np 142 (362)
T 3ffr_A 79 QNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VP------------ADAE-IICLTHNETS 142 (362)
T ss_dssp HHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CC------------TTCC-EEEEESEETT
T ss_pred HhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--cc------------CCcc-EEEEEcCCCC
Confidence 888877 6677777766633 33556678898888754 677776 21 1234 5555577899
Q ss_pred CCCCCChHHHHHHHHHc-CcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccC-Ccc-cEEEeCHHHHHH
Q 040324 253 EGELCKLPEIITICKRY-KAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG-SYG-GYIAGSKELIQY 329 (488)
Q Consensus 253 ~G~~~~l~~l~~l~~~~-g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g-~~G-g~i~~~~~~~~~ 329 (488)
+|.+.++++|.++|++| |+++|+|++|+.+... .++ .++|+++.|++|+++ .+| |+++.++++++.
T Consensus 143 tG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~---------~~~--~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~ 211 (362)
T 3ffr_A 143 SGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPK---------FDW--TKIDSVFFSVQKCFGLPAGLGVWILNDRVIEK 211 (362)
T ss_dssp TTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSC---------CCT--TSCSEEEEETTSTTCCCSCCEEEEEEHHHHHH
T ss_pred cceeCCHHHHHHHHHhCCCCEEEEecccccCCcc---------cCh--hHCcEEEEecccccCCCCceEEEEECHHHHHH
Confidence 99999999999999999 9999999999854322 112 226899999999998 556 888999988877
Q ss_pred HHhhCC-----CC--------------cccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-C
Q 040324 330 LKYNCP-----AH--------------LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-G 389 (488)
Q Consensus 330 ~~~~~~-----~~--------------~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 389 (488)
+..... .+ ....+.+...+.++.++++.+... ..+++.++.+++.+++.+.|+++ |
T Consensus 212 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~g 287 (362)
T 3ffr_A 212 SKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQI----SADGIRKQTEEKAALINTYIESSKV 287 (362)
T ss_dssp HHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred hhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHHHHccC
Confidence 764321 00 012336666666777788766321 25778899999999999999998 8
Q ss_pred CeecCCC----CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 390 FEVLGDN----DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 390 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
+.+..+. ...++++.+.. ...++.+.|.++||.+.+. + .+.+.+++||+++..+|++|+++++++|++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g-~--~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 288 FSFGVEDAKLRSMTTIVANTTM--LPGEINKILEPFDMAVGAG-Y--GSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp EEESSSCGGGBCSSEEEEEESS--CHHHHHHHHGGGTEEEEEC-S--GGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceeccCChhhcCCceEEEecCC--CHHHHHHHHHHCCeEEecC-c--cccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 8776521 24666766655 6778999999999999862 2 22345799999988999999999999998763
No 165
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.94 E-value=7e-26 Score=232.43 Aligned_cols=334 Identities=15% Similarity=0.158 Sum_probs=213.1
Q ss_pred eEEe-ccccccCCCCCCccchHHHHHHH-HHcCCCCCCcccCCCChhhHHHHH----HHHHHHhCCCC----e-EEeCCc
Q 040324 102 CLNL-GSYNYLGFAAADEYCTPRVIDSL-KKYSHSTCSSRVDGGTLALHNELE----ECVARFVGKPA----A-IVFGMG 170 (488)
Q Consensus 102 ~ld~-~s~~~lg~~~~~~~v~~a~~~~l-~~~~~~~~~~~~~~g~~~~~~~l~----~~la~~~g~~~----~-i~~~sG 170 (488)
.|++ .|.|++ +|.|.+|+...+ ++|+.++.+++...|. +...+++ +++++++|.+. + ++++||
T Consensus 56 ~i~lias~n~~-----~~~V~eA~~~~l~~~y~~G~~g~r~~~G~-~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sG 129 (490)
T 2a7v_A 56 GLELIASENFC-----SRAALEALGSCLNNKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG 129 (490)
T ss_dssp SEECCTTCCCC-----CHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred CceEECCCCCC-----CHHHHHHHHHHHcCCCccCCCcccccCcc-HHHHHHHHHHHHHHHHHcCCCcccCceEEeCCch
Confidence 3555 555552 578888888776 4566677777766554 3334555 89999999875 3 455699
Q ss_pred HHHHhhhhhcccCCCcEEEEeCCCchHHHH--------HHHhcCCe--EEEee------CCCHHHHHHHHHHHHhcCCCC
Q 040324 171 YVTNSSILPVLMGKGSLIISDSLNHNSIVN--------GARGSGAT--IRVFQ------HNTPSHLEEVLREQIAEGQPR 234 (488)
Q Consensus 171 s~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~--------~~~~~g~~--v~~~~------~~d~~~Le~~l~~~~~~~~p~ 234 (488)
++||..++.+++++||.|+++.+.|+++.. .+..+|.. ++.++ ..|+++|++.+++.
T Consensus 130 t~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~------- 202 (490)
T 2a7v_A 130 SPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF------- 202 (490)
T ss_dssp HHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhc-------
Confidence 999999999999999999999998875421 23344543 33333 23899999998752
Q ss_pred CCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccC
Q 040324 235 TRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG 314 (488)
Q Consensus 235 ~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g 314 (488)
..+.+++..+.++ ...++++|+++|++||++|++|++|..|..+ .|..... + ..+|+++.|++|+|+
T Consensus 203 ----~~klIi~~~s~~~---~~~dl~~i~~ia~~~g~~livD~Ah~~glv~-~g~~~~~-~----~~aDiv~~S~hK~l~ 269 (490)
T 2a7v_A 203 ----RPRLIIAGTSAYA---RLIDYARMREVCDEVKAHLLADMAHISGLVA-AKVIPSP-F----KHADIVTTTTHKTLR 269 (490)
T ss_dssp ----CCSEEEECCSSCC---SCCCHHHHHHHHHHTTCEEEEECGGGHHHHH-TTSSCCG-G----GTCSEEEEESSGGGC
T ss_pred ----CCcEEEEcCCCCC---CcccHHHHHHHHHHcCCEEEEcccccccccc-CCcCCCC-C----CCCCEEEECCcccCc
Confidence 1344444455554 4558999999999999999999999765443 1211111 1 135899999999995
Q ss_pred C-cccEEEeCHH---------------HHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 040324 315 S-YGGYIAGSKE---------------LIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENS 378 (488)
Q Consensus 315 ~-~Gg~i~~~~~---------------~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~ 378 (488)
+ .||+++++++ +.+.++........+ +.++..+++..++++.+. .++.+++.+++.+++
T Consensus 270 Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qg-gp~~~~iaAla~Al~~~~----~~~~~~~~~~~~~na 344 (490)
T 2a7v_A 270 GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQG-GPHNHAIAAVAVALKQAC----TPMFREYSLQVLKNA 344 (490)
T ss_dssp SCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCC-SCCHHHHHHHHHHHHHHH----SHHHHHHHHHHHHHH
T ss_pred cccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHH
Confidence 4 5799988763 456665543322322 245555555555666552 113467889999999
Q ss_pred HHHHHHHHhCCCeecC-CCCCCeEEEEeCCcc-hHHHHHHHHHHCCceEEeecCCC--ccCCCCeEEEeecC----CCCH
Q 040324 379 NFFRSKLQKMGFEVLG-DNDSPVMPIMVYNPA-KVSSFSRECLKQNVAIVTVGFPA--TPLLLARARICISA----SHTK 450 (488)
Q Consensus 379 ~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gi~v~~~~~~~--~~~~~~~iRi~~~~----~~t~ 450 (488)
++|++.|++.|+.+.. ...++++++.+.... ...++.+.|.+.||.+.....|. .|...+.+||+.++ .+++
T Consensus 345 ~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~ 424 (490)
T 2a7v_A 345 RAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFRE 424 (490)
T ss_dssp HHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCH
T ss_pred HHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCH
Confidence 9999999999998864 234678888876543 45678888888899998643333 23445789997643 5789
Q ss_pred HHHHHHHHHHHHHHHH
Q 040324 451 EDLIEALEVISRIGDL 466 (488)
Q Consensus 451 edid~~l~~l~~~~~~ 466 (488)
+|++++++.|.+++..
T Consensus 425 ~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 425 DDFRRVVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998864
No 166
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.94 E-value=1.9e-26 Score=232.25 Aligned_cols=328 Identities=12% Similarity=0.085 Sum_probs=225.0
Q ss_pred cceeEEeccccccCC---CCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh-CC----CCeEE--eC
Q 040324 99 VSRCLNLGSYNYLGF---AAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV-GK----PAAIV--FG 168 (488)
Q Consensus 99 g~~~ld~~s~~~lg~---~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~----~~~i~--~~ 168 (488)
+++++||+++.|++. .+.++.+.+++.+++++. ... .++......++++.+|+++ +. +++++ ++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~-----~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~ 98 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE-TTK-----TYAGLSGEPEFQKAMGELILGDGLKSETTATLATV 98 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHC-CCC-----CCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEE
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCc-ccC-----CCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecC
Confidence 567899987776433 234678888888887652 111 1122233479999999987 43 34555 77
Q ss_pred CcHHHHhhhhhccc--CCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC---C----CHHHHHHHHHHHHhcCCCCCCCCC
Q 040324 169 MGYVTNSSILPVLM--GKGSLIISDSLNHNSIVNGARGSGATIRVFQH---N----TPSHLEEVLREQIAEGQPRTRRPW 239 (488)
Q Consensus 169 sGs~a~~~~~~~~~--~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~---~----d~~~Le~~l~~~~~~~~p~~~~~~ 239 (488)
+|++++..++..+. .+|+.|+++.++|+.+...++..|.+++.++. + |++++++.+++. +.
T Consensus 99 g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~----------~~ 168 (394)
T 2ay1_A 99 GGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA----------KK 168 (394)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC----------CT
T ss_pred CchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhC----------CC
Confidence 78888877766654 38899999999999999999989999988886 3 789998888641 11
Q ss_pred ceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCC--CC-cchhcCCCCCCccEEEccccccc
Q 040324 240 KKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTG--RG-VCELLGVDTSDVDIMMGTFSKSF 313 (488)
Q Consensus 240 ~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g--~~-~~~~~~v~p~~~di~~~t~sK~~ 313 (488)
.+.++++....+++|.+.+ +++|+++|++||+++|+||+|+ .++++| .. ....+... .+.+++++|+||++
T Consensus 169 ~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~ 245 (394)
T 2ay1_A 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQ--GFGDGLEEDAAGTRLIASR-IPEVLIAASCSKNF 245 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCT--TSSSCHHHHHHHHHHHHHH-CSSEEEEEECTTTT
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCcc--ccccCcccchHHHHHHhhc-CCCEEEEEeccCCC
Confidence 3567777888999998875 7789999999999999999999 555443 11 11111111 12257889999999
Q ss_pred CCcc---cEEEe---CHHHHHHH----HhhCCCCcccCCCCHHHHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHHHHH
Q 040324 314 GSYG---GYIAG---SKELIQYL----KYNCPAHLYATSISPPAAEQIISAIQVVI-GEDGSCRGAQKLARIRENSNFFR 382 (488)
Q Consensus 314 g~~G---g~i~~---~~~~~~~~----~~~~~~~~~~~~~~p~~~aa~~a~L~~i~-~~~~~~~~~~~~~~~~~~~~~l~ 382 (488)
|.+| ||+++ ++++++.+ ...... .++ +.+++.++++.++|+... .+...++.++..++++++.+++.
T Consensus 246 ~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~-~~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 323 (394)
T 2ay1_A 246 GIYRERTGCLLALCADAATRELAQGAMAFLNRQ-TYS-FPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT-TTS-SCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCccceEEEEeCCHHHHHHHHHHHHHHHhh-hcC-CCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9777 99987 67654433 221111 222 246777777777775320 00001245678888999999999
Q ss_pred HHHHhCC----CeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHH
Q 040324 383 SKLQKMG----FEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALE 458 (488)
Q Consensus 383 ~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~ 458 (488)
+.|++.+ +.+..+.++.++++.+ + ...+.+.|.++||.+.+ .+||+++ .+|++|++++++
T Consensus 324 ~~L~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~~~~l~~~gi~v~~-----------~~Ris~~-~~~~~~i~~~~~ 387 (394)
T 2ay1_A 324 GELRDLSGSDRFGFVAEHRGMFSRLGA--T--PEQVKRIKEEFGIYMVG-----------DSRINIA-GLNDNTIPILAR 387 (394)
T ss_dssp HHHHHHHTSSTTTHHHHCCSSEEECCC--C--HHHHHHHHHHHCEECCT-----------TCEEEGG-GCCTTTHHHHHH
T ss_pred HHHHhcCCCCCeeEEcCCceEEEeeCC--C--HHHHHHHHHhCCEEecC-----------CCeEEee-cCCHhhHHHHHH
Confidence 9998875 6655555555555433 2 23566666678999873 2699987 579999999999
Q ss_pred HHHHH
Q 040324 459 VISRI 463 (488)
Q Consensus 459 ~l~~~ 463 (488)
+|+++
T Consensus 388 ~l~~~ 392 (394)
T 2ay1_A 388 AIIEV 392 (394)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99875
No 167
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.94 E-value=5.3e-25 Score=228.36 Aligned_cols=332 Identities=15% Similarity=0.110 Sum_probs=220.5
Q ss_pred CccchHHHHHHHHHcCC-CCCCcccCCCChhhHHHHHHHHHHHh-----CC----CCeEEeCCcHHHHhhhhhcccCCCc
Q 040324 117 DEYCTPRVIDSLKKYSH-STCSSRVDGGTLALHNELEECVARFV-----GK----PAAIVFGMGYVTNSSILPVLMGKGS 186 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~-----g~----~~~i~~~sGs~a~~~~~~~~~~~~~ 186 (488)
+..+.+++.+++++.+. .........|. .++++.+++++ |. +++++++++++++..++.++..++|
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~----~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd 178 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGV----NCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGG 178 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSC----HHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCG
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCH----HHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCC
Confidence 45566777888877532 11111122244 56666666655 33 2455555555666778888888764
Q ss_pred ----EEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCC
Q 040324 187 ----LIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE 255 (488)
Q Consensus 187 ----~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~ 255 (488)
.|+++.|.|+.+...++..|++++.++++ |+++|++.+++.... ...++++++ ...+++|.
T Consensus 179 ~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~-------~~~k~i~l~-np~NPTG~ 250 (498)
T 3ihj_A 179 KSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-------CDPKVLCII-NPGNPTGQ 250 (498)
T ss_dssp GGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTT-------SEEEEEEEE-SSCTTTCC
T ss_pred CCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhcc-------CCCeEEEEE-CCCCCCCC
Confidence 99999999999999999999999999865 899999999864110 014555555 77889998
Q ss_pred CCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCC--cchhc-CCCC---CC-ccEEEccccccc-CCcc---cEEE
Q 040324 256 LCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRG--VCELL-GVDT---SD-VDIMMGTFSKSF-GSYG---GYIA 321 (488)
Q Consensus 256 ~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~--~~~~~-~v~p---~~-~di~~~t~sK~~-g~~G---g~i~ 321 (488)
+.+ +++|+++|++||++||+||+|..+.++..... ..... +..+ ++ ..++++||||++ |.+| ||++
T Consensus 251 v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~ 330 (498)
T 3ihj_A 251 VQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYME 330 (498)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEE
T ss_pred cCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEE
Confidence 865 78899999999999999999995555422111 11110 0100 11 147789999999 5455 9987
Q ss_pred ---eCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHH-----------HHhccCCCchHHHHHHHHHHHHHHHHHHHHh
Q 040324 322 ---GSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQ-----------VVIGEDGSCRGAQKLARIRENSNFFRSKLQK 387 (488)
Q Consensus 322 ---~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~-----------~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 387 (488)
.++++++.+..... .+ .+.+.+.++++.++++ .+ ++..+++++++++.+++.+.|++
T Consensus 331 ~~~~~~~l~~~l~~~~~--~~-~~~~~~~q~a~~~~l~~~~~g~~~~~~~~------~~~~~~~~~l~~~~~~l~~~L~~ 401 (498)
T 3ihj_A 331 VINLHPEIKGQLVKLLS--VR-LCPPVSGQAAMDIVVNPPVAGEESFEQFS------REKESVLGNLAKKAKLTEDLFNQ 401 (498)
T ss_dssp EESCCHHHHHHHHHHHH--HS-CCCCHHHHHHHHHHTCCCCTTSTTHHHHH------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EecCCHHHHHHHHHHHh--cc-CCCCHHHHHHHHHHhcCCccCcccHHHHH------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999988876532 11 2245555444434332 11 13456778899999999999999
Q ss_pred C-CCeecCCCCCCeEEEEeCCcch-----------HHHH-HHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHH
Q 040324 388 M-GFEVLGDNDSPVMPIMVYNPAK-----------VSSF-SRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDL 453 (488)
Q Consensus 388 ~-g~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edi 453 (488)
+ |+.+..+.++.++++.+..+.. ..++ +..++ ++||.+++......+.+.+++|+++ .++++++
T Consensus 402 ~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l 479 (498)
T 3ihj_A 402 VPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKL 479 (498)
T ss_dssp STTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHH
T ss_pred CCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHH
Confidence 8 8888776666665555543322 1232 45554 5699999844333334567999998 4899999
Q ss_pred HHHHHHHHHHHHHhCCcc
Q 040324 454 IEALEVISRIGDLVGIKY 471 (488)
Q Consensus 454 d~~l~~l~~~~~~~~~~~ 471 (488)
++++++|.++++++..+|
T Consensus 480 ~~~i~~L~~~~~~~~~~~ 497 (498)
T 3ihj_A 480 KTVLQKVKDFHINFLEKY 497 (498)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998876554
No 168
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.94 E-value=7.6e-26 Score=229.61 Aligned_cols=336 Identities=11% Similarity=0.029 Sum_probs=219.4
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCC--CcccCCCChhhHHHHHHHHHHHh------CC--CCeEEeC
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTC--SSRVDGGTLALHNELEECVARFV------GK--PAAIVFG 168 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~--~~~~~~g~~~~~~~l~~~la~~~------g~--~~~i~~~ 168 (488)
+..++||+ .|.+...|.+.+++.+++.+...... .....++......+|++.+|+++ +. +++++++
T Consensus 30 ~~~~i~l~----~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~ 105 (417)
T 3g7q_A 30 TPGAIMLG----GGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTN 105 (417)
T ss_dssp --CCEECS----CCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CCCceEec----CcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeC
Confidence 45678887 34443344555666666554311000 00012233444578999999987 22 3566667
Q ss_pred CcHHHHhhhhhcccCCCc-----EEEEe-CCCchHHHHHHHh------cCCeEEEeeCC------CHHHHHHHHHHHHhc
Q 040324 169 MGYVTNSSILPVLMGKGS-----LIISD-SLNHNSIVNGARG------SGATIRVFQHN------TPSHLEEVLREQIAE 230 (488)
Q Consensus 169 sGs~a~~~~~~~~~~~~~-----~Vl~~-~~~h~~~~~~~~~------~g~~v~~~~~~------d~~~Le~~l~~~~~~ 230 (488)
+|++++..+++++.++++ .|++. .|.|+.+...... .+..+..++.+ |+++|+ +.+
T Consensus 106 G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~---- 179 (417)
T 3g7q_A 106 GSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGE---- 179 (417)
T ss_dssp CHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCT----
T ss_pred CcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--ccc----
Confidence 777788888888888876 78886 8999887655422 13344444432 677766 221
Q ss_pred CCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCC--CCCCccEE
Q 040324 231 GQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGV--DTSDVDIM 305 (488)
Q Consensus 231 ~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v--~p~~~di~ 305 (488)
++.+|++...++++|.+.+ +++|+++|++||+++|+||+|+. +.. +. .+.+. ...+.+++
T Consensus 180 ---------~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~--~~~-~~---~~~~~~~~~~~~~i~ 244 (417)
T 3g7q_A 180 ---------ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGV--PFP-GI---IFSEARPLWNPNIIL 244 (417)
T ss_dssp ---------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCT--TTT-CC---BCSCCCCCCCTTEEE
T ss_pred ---------CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcc--ccc-cc---cccccccCCCCCEEE
Confidence 3445666777889999888 99999999999999999999973 211 10 01111 12356888
Q ss_pred EcccccccCCcc---cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHH-HHHHHHHHHHHH
Q 040324 306 MGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQ-KLARIRENSNFF 381 (488)
Q Consensus 306 ~~t~sK~~g~~G---g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~-~~~~~~~~~~~l 381 (488)
+.|||| ++.+| ||+++++++++.+......++++ .+++.++++.+.++.. ...+...+ +.++++++.+.+
T Consensus 245 ~~s~sK-~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 318 (417)
T 3g7q_A 245 CMSLSK-LGLPGSRCGIIIANDKTITAIANMNGIISLA--PGGMGPAMMCEMIKRN---DLLRLSETVIKPFYYQRVQQT 318 (417)
T ss_dssp EEESGG-GTCTTSCCEEEECCHHHHHHHHHHHHHHCCC--CCSHHHHHHHHHHHTT---CHHHHHHHTHHHHHHHHHHHH
T ss_pred EEechh-ccCCCcceEEEEeCHHHHHHHHHhhcceeeC--CCcHHHHHHHHHHcCc---chHHHHHHHHHHHHHHHHHHH
Confidence 999999 56666 99999999999887655433333 6677777766666532 00011222 566777788888
Q ss_pred HHHHHhC----CCeecCCCCCCeEEEEeCC-cchHHHHHHHHHHCCceEEeec-CCCccC-----CCCeEEEeecCCCCH
Q 040324 382 RSKLQKM----GFEVLGDNDSPVMPIMVYN-PAKVSSFSRECLKQNVAIVTVG-FPATPL-----LLARARICISASHTK 450 (488)
Q Consensus 382 ~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~-----~~~~iRi~~~~~~t~ 450 (488)
.+.|++. ++.+..+.++.++++.+.. .....++.+.|.++||.+.+.. |..... ..+++||+++. |+
T Consensus 319 ~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~ 396 (417)
T 3g7q_A 319 IAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EP 396 (417)
T ss_dssp HHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CH
T ss_pred HHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CH
Confidence 8888763 5777777777888887765 4567789999999999999733 211111 14799999963 99
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040324 451 EDLIEALEVISRIGDLV 467 (488)
Q Consensus 451 edid~~l~~l~~~~~~~ 467 (488)
+++++++++|.++++++
T Consensus 397 ~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 397 DKIEAGVKILAEEIERA 413 (417)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998775
No 169
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.94 E-value=1.6e-25 Score=233.59 Aligned_cols=341 Identities=12% Similarity=0.031 Sum_probs=236.0
Q ss_pred EEeccccccCCC-CCCccchHHHHHHHHHcCCCCCCc-ccCCCChhhHHHHHHHHHHHhCCC----Ce--EEeCCcHHHH
Q 040324 103 LNLGSYNYLGFA-AADEYCTPRVIDSLKKYSHSTCSS-RVDGGTLALHNELEECVARFVGKP----AA--IVFGMGYVTN 174 (488)
Q Consensus 103 ld~~s~~~lg~~-~~~~~v~~a~~~~l~~~~~~~~~~-~~~~g~~~~~~~l~~~la~~~g~~----~~--i~~~sGs~a~ 174 (488)
+++.+..++|.. +.++.+.+++.+++.......... ....+......++++.+++++|.+ .+ +++++|++++
T Consensus 94 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~ 173 (514)
T 3mad_A 94 PAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESL 173 (514)
T ss_dssp HHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHH
T ss_pred CCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHH
Confidence 344455555542 345677888888876643222111 111122334456777778888875 45 8888899999
Q ss_pred hhhhhcccCCC--------cEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCce
Q 040324 175 SSILPVLMGKG--------SLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKK 241 (488)
Q Consensus 175 ~~~~~~~~~~~--------~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~ 241 (488)
..+++++..++ +.|+++.+.|.++...++..|.+++.++.+ |+++|++++++ ++
T Consensus 174 ~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~-------------~~ 240 (514)
T 3mad_A 174 LLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITP-------------NT 240 (514)
T ss_dssp HHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCT-------------TE
T ss_pred HHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhcc-------------CC
Confidence 88888876655 899999999999999999999999999876 89999988754 45
Q ss_pred EEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEcccccccc---CCCCCCcchhcCCCCCCccEEEcccccccC-Ccc
Q 040324 242 IMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAV---GKTGRGVCELLGVDTSDVDIMMGTFSKSFG-SYG 317 (488)
Q Consensus 242 ~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~---g~~g~~~~~~~~v~p~~~di~~~t~sK~~g-~~G 317 (488)
.+|+++.+++++|.+.++++|+++|++||++||+||+|+.+.+ +..|.... .+.....++|+++.|++|.++ +.|
T Consensus 241 ~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~-~~~~~~~g~d~~~~s~~K~l~~~~~ 319 (514)
T 3mad_A 241 VVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVP-PFDFRLEGVTSVSADTHKYGYGAKG 319 (514)
T ss_dssp EEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCC-CCSTTSTTCCEEEECTTTTTCCCSS
T ss_pred EEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCC-cccccCCCCcEEEECchhccCCCCC
Confidence 6777788999999999999999999999999999999984433 23333111 122223456899999999954 334
Q ss_pred -cEEEeCHHHHHHHHhh-CCC--------CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh
Q 040324 318 -GYIAGSKELIQYLKYN-CPA--------HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQK 387 (488)
Q Consensus 318 -g~i~~~~~~~~~~~~~-~~~--------~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 387 (488)
|+++.+++........ ... .....+.+.....+..++++.+.. ...+++.+++.++++++++.|++
T Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~----~~~~~~~~~~~~~~~~l~~~L~~ 395 (514)
T 3mad_A 320 TSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGE----EGYLDATRRILQAADRLKAGVRA 395 (514)
T ss_dssp CEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 7877766554332110 000 011122344444455556655521 14577889999999999999999
Q ss_pred C-CCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeec-CCCCHHHHHHHHHHHHHHHH
Q 040324 388 M-GFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICIS-ASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 388 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~-~~~t~edid~~l~~l~~~~~ 465 (488)
+ ++++..+. ..++++.. ......++.+.|+++||.+....+ .+.+|++++ ...+++++++++++|+++++
T Consensus 396 ~~g~~~~~~~-~~~~~~~~-~~~~~~~l~~~L~~~Gi~v~g~~~------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 396 IPSLKILGDP-LWVIAVAS-DELNIYQVMEEMAGRGWRLNGLHR------PPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp STTCEESSCC-SSEEEEEC-SSSCHHHHHHHHHTTTCBCEEETT------TTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred CCCeEEeCCC-eEEEEEeC-CCCCHHHHHHHHHhcCCEeccCCC------CCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 7 78877655 34555544 334567899999999998853332 267999986 44567999999999999998
Q ss_pred HhCC
Q 040324 466 LVGI 469 (488)
Q Consensus 466 ~~~~ 469 (488)
++..
T Consensus 468 ~~~~ 471 (514)
T 3mad_A 468 QVRA 471 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8743
No 170
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.94 E-value=9.7e-26 Score=228.44 Aligned_cols=325 Identities=15% Similarity=0.079 Sum_probs=223.9
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh-CCC-------Ce--EEeC
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV-GKP-------AA--IVFG 168 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~~-------~~--i~~~ 168 (488)
...+|||++++|+++.. ++.+.+++.++...... .++......+|++.+++++ +.+ +. ..++
T Consensus 40 ~~~~i~l~~g~~~d~~~-~~~v~~a~~~a~~~~~~-------~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~ 111 (409)
T 4eu1_A 40 AKRKVNLSIGVYRDDAD-QPFVLECVKQATLGTNM-------DYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTL 111 (409)
T ss_dssp CSSCEECCCSSCCCTTS-CCCCCHHHHTCCCCSCC-------CCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEES
T ss_pred CcCceeeeeeEEECCCC-CEeecHHHHhcCccccc-------cCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecc
Confidence 35689999888877664 46788888877221111 1222333479999999987 542 23 3366
Q ss_pred CcHHHHhh---hhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCC
Q 040324 169 MGYVTNSS---ILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRP 238 (488)
Q Consensus 169 sGs~a~~~---~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~ 238 (488)
+|++++.. ++.+++++||.|+++.|+|+.+...++..|.+++.++.+ |+++|++.+++. +
T Consensus 112 ~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~----------~ 181 (409)
T 4eu1_A 112 GGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKA----------P 181 (409)
T ss_dssp HHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHS----------C
T ss_pred cchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhC----------C
Confidence 67777643 466778899999999999999999999999999998752 789999988752 1
Q ss_pred CceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCC-----CCcchhcCCCCCCccEEEcccc
Q 040324 239 WKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTG-----RGVCELLGVDTSDVDIMMGTFS 310 (488)
Q Consensus 239 ~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g-----~~~~~~~~v~p~~~di~~~t~s 310 (488)
.++.++++...++++|.+.+ +++|+++|++||+++|+||+|+ .++..+ .......+.. +..++++|||
T Consensus 182 ~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~--~~~~~~~~~~~~~~~~~~~~~--~~~i~~~S~S 257 (409)
T 4eu1_A 182 EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ--GFATGQLDYDAFVPRHLVDMV--PNLIVAQSFS 257 (409)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT--TTTTSCHHHHTHHHHHHHTTS--SCCEEEEECT
T ss_pred CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc--ccccCCcccchHHHHHHHhhC--CcEEEEecCc
Confidence 24566776777899998887 6669999999999999999999 555443 1222333432 2368889999
Q ss_pred cccCCcc---cEE---EeCHH----HHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHH
Q 040324 311 KSFGSYG---GYI---AGSKE----LIQYLKYNCPAHLYATSISPPAAEQIISAIQVVI-GEDGSCRGAQKLARIRENSN 379 (488)
Q Consensus 311 K~~g~~G---g~i---~~~~~----~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~-~~~~~~~~~~~~~~~~~~~~ 379 (488)
|++|.+| ||+ +++++ +++.+......... +.++..++++.++|+... .+...+..++.+++++++.+
T Consensus 258 K~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (409)
T 4eu1_A 258 KNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYN--NPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRK 335 (409)
T ss_dssp TTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcC--CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888 995 67777 55555543322222 256677666666665210 00001135678889999999
Q ss_pred HHHHHHHhCC----CeecCCCCCCeEEEEeCCcchHHHHHHHHHH-CCceEEeecCCCccCCCCeEEEeecCCCCHHHHH
Q 040324 380 FFRSKLQKMG----FEVLGDNDSPVMPIMVYNPAKVSSFSRECLK-QNVAIVTVGFPATPLLLARARICISASHTKEDLI 454 (488)
Q Consensus 380 ~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid 454 (488)
++.+.|++.| +.+..+.++.+.++.+ + .+++..+++ +||.+.+ . .||+++ .++++|++
T Consensus 336 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~--~---~~~~~~ll~~~gv~v~p----~-------~Ri~~~-~~~~~~i~ 398 (409)
T 4eu1_A 336 RLVSELKACGSVHDWSHIERQVGMMAYTGL--T---REQVELLRSEYHIYMTL----N-------GRAAVS-GLNSTNVE 398 (409)
T ss_dssp HHHHHHHHTTCCSCCHHHHHSCSSEEECCC--C---HHHHHHHHHHHCEECCT----T-------CEEEGG-GCCTTTHH
T ss_pred HHHHHHHhcCCCCCcceecCCceEEEEeCC--C---HHHHHHHHHcCCEEEcC----C-------CEEEEE-ecCHhhHH
Confidence 9999999987 5555555555444222 1 345667775 5999883 1 478774 46788899
Q ss_pred HHHHHHHHHH
Q 040324 455 EALEVISRIG 464 (488)
Q Consensus 455 ~~l~~l~~~~ 464 (488)
+++++|++++
T Consensus 399 ~~~~~l~~~l 408 (409)
T 4eu1_A 399 YVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 171
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.94 E-value=3.4e-25 Score=218.33 Aligned_cols=303 Identities=16% Similarity=0.120 Sum_probs=219.6
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhC---C-CC-eEEeCCcHHHH
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVG---K-PA-AIVFGMGYVTN 174 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g---~-~~-~i~~~sGs~a~ 174 (488)
.+++||.++.+ .++ .++.+.+++.+++.+.+.. .++. ....++++.+|++++ . ++ ++++++|++++
T Consensus 19 ~~~i~l~~~~~-~~~-~~~~v~~a~~~~~~~~~~~------~y~~-~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al 89 (335)
T 1uu1_A 19 RDKTYLALNEN-PFP-FPEDLVDEVFRRLNSDALR------IYYD-SPDEELIEKILSYLDTDFLSKNNVSVGNGADEII 89 (335)
T ss_dssp CCSEEESSCCC-SSC-CCHHHHHHHHHTCCGGGGG------SCCC-SSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHH
T ss_pred CcceECCCCCC-CCC-CCHHHHHHHHHHhhhhhhh------cCCC-CchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHH
Confidence 36799976543 333 4578888888877432111 1111 124899999999998 4 34 44455556666
Q ss_pred hhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCc
Q 040324 175 SSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGI 249 (488)
Q Consensus 175 ~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v 249 (488)
..++.++ |+.|+++ |+|+.+...++..|.+++.++.+ |+++| + ..++++++.+
T Consensus 90 ~~~~~~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l-----~------------~~~~v~l~~p- 147 (335)
T 1uu1_A 90 YVMMLMF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV-----G------------EGDVVFIPNP- 147 (335)
T ss_dssp HHHHHHS---SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC-----C------------TTEEEEEESS-
T ss_pred HHHHHHh---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc-----C------------CCCEEEEeCC-
Confidence 7777776 7899999 99999999888899999888764 23333 1 1455555554
Q ss_pred CCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc---cEEEeCHHH
Q 040324 250 YSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKEL 326 (488)
Q Consensus 250 ~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~ 326 (488)
.+++|.+.+.+++.++++.+| ++|+||+|+ .++.. ......+ ..+.++++.|+||++|.+| ||+++++++
T Consensus 148 ~nptG~~~~~~~l~~l~~~~~-~li~De~~~--~~~~~--~~~~~~~--~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 220 (335)
T 1uu1_A 148 NNPTGHVFEREEIERILKTGA-FVALDEAYY--EFHGE--SYVDFLK--KYENLAVIRTFSKAFSLAAQRVGYVVASEKF 220 (335)
T ss_dssp CTTTCCCCCHHHHHHHHHTTC-EEEEECTTH--HHHCC--CCGGGGG--TCSSEEEEEESTTTTTCGGGCCEEEEECHHH
T ss_pred CCCCCCCCCHHHHHHHHHhCC-EEEEECcch--hhcch--hHHHHhh--hCCCEEEEecchhhcCCcccCeEEEEeCHHH
Confidence 788999999999999999989 999999998 44321 2222222 2345788999999998777 999999999
Q ss_pred HHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeC
Q 040324 327 IQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVY 406 (488)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 406 (488)
++.+...... + +.+++.++++.++|+.. ++.++..++++++.+++.+.|++.|+.+. +.+++++++.+.
T Consensus 221 ~~~l~~~~~~--~--~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~ 289 (335)
T 1uu1_A 221 IDAYNRVRLP--F--NVSYVSQMFAKVALDHR------EIFEERTKFIVEERERMKSALREMGYRIT-DSRGNFVFVFME 289 (335)
T ss_dssp HHHHHHHSCT--T--CSCHHHHHHHHHHHHTH------HHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CCCSSEEEEECC
T ss_pred HHHHHHhcCC--C--CcCHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHCCcEEc-CCCCeEEEEECC
Confidence 9988876543 3 37888888888887642 14567888899999999999988887664 445677777664
Q ss_pred CcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 407 NPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 407 ~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
. ....++.+.|.++||.+.+ ..+++||++. +++|+++++++|+++
T Consensus 290 ~-~~~~~~~~~l~~~gi~v~~--------~~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 290 K-EEKERLLEHLRTKNVAVRS--------FREGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp T-HHHHHHHHHHHHHTEEEEE--------ETTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred C-CCHHHHHHHHHHCCEEEEE--------CCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 4 3566899999999999985 2368999983 578899999998753
No 172
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.94 E-value=9.3e-26 Score=228.74 Aligned_cols=331 Identities=13% Similarity=0.044 Sum_probs=224.3
Q ss_pred cceeEEeccccccCCCC---CCccchHHHHH-HHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh-C-------CCCeEE
Q 040324 99 VSRCLNLGSYNYLGFAA---ADEYCTPRVID-SLKKYSHSTCSSRVDGGTLALHNELEECVARFV-G-------KPAAIV 166 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~---~~~~v~~a~~~-~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g-------~~~~i~ 166 (488)
|+.++||+++.|+.... .++.+.+++.+ +++. +.. ..++......++++.+++++ + .+++++
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-~~~-----~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~ 101 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-SYN-----HEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVIS 101 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-TCC-----CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc-ccc-----cCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEE
Confidence 57789999877755532 24556666665 5432 110 11223334578999999988 3 235566
Q ss_pred --eCCcHHHHhhh--hhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC-C------CHHHHHHHHHHHHhcCCCCC
Q 040324 167 --FGMGYVTNSSI--LPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH-N------TPSHLEEVLREQIAEGQPRT 235 (488)
Q Consensus 167 --~~sGs~a~~~~--~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~-~------d~~~Le~~l~~~~~~~~p~~ 235 (488)
+++|++++..+ +.....+|+.|+++.|+|+.+...++..|.+++.++. + |+++|++.+++.
T Consensus 102 ~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-------- 173 (412)
T 1yaa_A 102 VQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA-------- 173 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS--------
T ss_pred EeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC--------
Confidence 66777777555 2334468999999999999999999999999988886 1 789999888752
Q ss_pred CCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCC---CC--cchhcCCCCCC--ccEE
Q 040324 236 RRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTG---RG--VCELLGVDTSD--VDIM 305 (488)
Q Consensus 236 ~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g---~~--~~~~~~v~p~~--~di~ 305 (488)
+..++++++....+++|.+.+ +++|+++|++||+++|+||+|+ .++..+ .. ........ ++ .+++
T Consensus 174 --~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 248 (412)
T 1yaa_A 174 --PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ--GFATGDLDKDAYAVRLGVEKL-STVSPVFV 248 (412)
T ss_dssp --CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT--TTSSSCHHHHTHHHHHHHHHT-TTTCCEEE
T ss_pred --CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc--cccCCcccchhHHHHHHHhcC-CCCcceEE
Confidence 113566666888899998865 7789999999999999999998 554443 11 21221111 21 4788
Q ss_pred EcccccccCCcc---cEEE--e-----CHH----HHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHh-ccCCCchHHHH
Q 040324 306 MGTFSKSFGSYG---GYIA--G-----SKE----LIQYLKYNCPAHLYATSISPPAAEQIISAIQVVI-GEDGSCRGAQK 370 (488)
Q Consensus 306 ~~t~sK~~g~~G---g~i~--~-----~~~----~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~-~~~~~~~~~~~ 370 (488)
++|+||.+|.+| ||++ + +++ +++.+...... .+ .+.+++.++++.++|+... .+...++.++.
T Consensus 249 ~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 326 (412)
T 1yaa_A 249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRS-EV-SNPPAYGAKIVAKLLETPELTEQWHKDMVTM 326 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHT-TT-SSCCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred EeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhh-cc-CCCChHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999867 9987 7 666 77777653221 12 2257777777777776430 00001145678
Q ss_pred HHHHHHHHHHHHHHHHhCC----CeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecC
Q 040324 371 LARIRENSNFFRSKLQKMG----FEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISA 446 (488)
Q Consensus 371 ~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~ 446 (488)
+++++++.+++.+.|++.+ +.+..+.++.++++.+ ....+.+.+.++||.+.+ .+||+++.
T Consensus 327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~-----------~~Ris~~~ 391 (412)
T 1yaa_A 327 SSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL----TPQMVKRLEETHAVYLVA-----------SGRASIAG 391 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC----CHHHHHHHHHHHCEECCT-----------TSEEEGGG
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC----CHHHHHHHHHhCCEEecc-----------CcEEEEcc
Confidence 8889999999999999876 6665555554443322 233454444467998873 47999863
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 040324 447 SHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 447 ~~t~edid~~l~~l~~~~~~ 466 (488)
+|++++++++++|+++++.
T Consensus 392 -~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 392 -LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp -CCTTTHHHHHHHHHHHHHH
T ss_pred -CCHhHHHHHHHHHHHHHHh
Confidence 5999999999999998865
No 173
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.94 E-value=5.8e-25 Score=226.63 Aligned_cols=336 Identities=14% Similarity=0.113 Sum_probs=217.9
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSIL 178 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~ 178 (488)
|+.||||.+ +++. |.+.+++.+++... . ..++..+...+|+++++++++.++++++++|++|+..++
T Consensus 40 ~~~ylD~~~----~~~~--~~v~~a~~~~l~~~-~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 40 EDVFIDLLT----DSGT--GAVTQSMQAAMMRG-D------EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp GGCSEECSC----CSSC--SCCCHHHHHHTTSC-C------CCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHH
T ss_pred CCeeEeccc----CCCc--HHHHHHHHHHhccC-c------ceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHH
Confidence 788999974 3332 78899998887532 1 123455667899999999999989999999999998888
Q ss_pred hcccCC-----C----cEEEEeCCCchHH-HHHHHhcCCeEEEe------e------C---CCHHHHHHHHHHHHhcCCC
Q 040324 179 PVLMGK-----G----SLIISDSLNHNSI-VNGARGSGATIRVF------Q------H---NTPSHLEEVLREQIAEGQP 233 (488)
Q Consensus 179 ~~~~~~-----~----~~Vl~~~~~h~~~-~~~~~~~g~~v~~~------~------~---~d~~~Le~~l~~~~~~~~p 233 (488)
+++.++ | |.|++. .+|..+ .......++.+... + . .|+++|++.+++..
T Consensus 107 ~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~----- 180 (467)
T 2oqx_A 107 PVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG----- 180 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC-----
T ss_pred HHHhccccccCCCCccceEEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC-----
Confidence 877766 6 777777 566443 33344455554431 1 1 18899999997521
Q ss_pred CCCCCCceEEEEEcCcCCCC-CCCC---ChHHHHHHHHHcCcEEEEEccccc-ccc-------CCCCCCcchhc--CCCC
Q 040324 234 RTRRPWKKIMVVVEGIYSME-GELC---KLPEIITICKRYKAYTYLDEAHSI-GAV-------GKTGRGVCELL--GVDT 299 (488)
Q Consensus 234 ~~~~~~~~~~vi~e~v~s~~-G~~~---~l~~l~~l~~~~g~~li~DE~~s~-g~~-------g~~g~~~~~~~--~v~p 299 (488)
+.++++|++++++++. |.+. ++++|+++|++||++||+|++|.. +.+ +..|.....+. ..
T Consensus 181 ----~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-- 254 (467)
T 2oqx_A 181 ----PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-- 254 (467)
T ss_dssp ----GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG--
T ss_pred ----CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh--
Confidence 0134567777877775 7655 488999999999999999999875 332 33443222211 00
Q ss_pred CCccEEEcccccccCCc-ccEEEeCHH-HHH---HHHhh---CCC-CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHH
Q 040324 300 SDVDIMMGTFSKSFGSY-GGYIAGSKE-LIQ---YLKYN---CPA-HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQK 370 (488)
Q Consensus 300 ~~~di~~~t~sK~~g~~-Gg~i~~~~~-~~~---~~~~~---~~~-~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~ 370 (488)
...|+++.|++|++|.+ ||+++++++ +++ .++.. ..+ ..++ ..+...+++....++.. ..++.
T Consensus 255 ~~~d~~~~s~sK~~g~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~l~~~-------~~~~~ 326 (467)
T 2oqx_A 255 KYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG-GLEGGAMERLAVGLYDG-------MNLDW 326 (467)
T ss_dssp GGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC-CCCHHHHHHHHHHHHHT-------TCHHH
T ss_pred ccCCeEEEecccccCCCCceEEEecChhHHHHHHHHHHhhhccCCccccc-chhhhHHHHHHHhhHhh-------hhHHH
Confidence 11356778999999876 788888766 433 33322 111 1122 12222222211222221 11245
Q ss_pred HHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCC---cch-----HHHHHHHH-HHCCceEEeecC---CC------
Q 040324 371 LARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYN---PAK-----VSSFSREC-LKQNVAIVTVGF---PA------ 432 (488)
Q Consensus 371 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~l-~~~Gi~v~~~~~---~~------ 432 (488)
+++..++.+++.+.|++.|+++. +.++.++++.+.. ... ..++++.| .++||.+.+.+. ..
T Consensus 327 ~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~ 405 (467)
T 2oqx_A 327 LAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGK 405 (467)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCS
T ss_pred HHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccc
Confidence 56667889999999998888777 6667777776631 111 45668888 778999987431 10
Q ss_pred -ccCCCCeEEEeecCC-CCHHHHHHHHHHHHHHHHHhC
Q 040324 433 -TPLLLARARICISAS-HTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 433 -~~~~~~~iRi~~~~~-~t~edid~~l~~l~~~~~~~~ 468 (488)
.+.+.+++||+++.. +|++||++++++|++++++..
T Consensus 406 ~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp BCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred cccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 111247999999988 999999999999999987653
No 174
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.94 E-value=9.7e-26 Score=225.11 Aligned_cols=282 Identities=16% Similarity=0.187 Sum_probs=211.9
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcc-cCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC------C
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL-MGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN------T 216 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~-~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d 216 (488)
..+...++++.+|++++.++++++++|++|+..++.++ .++|+.|+++.+.|+++...++..|.+++.++.+ |
T Consensus 33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d 112 (367)
T 3nyt_A 33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLD 112 (367)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcC
Confidence 45667899999999999999999999999998888888 8899999999999999999999999999988754 7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcC
Q 040324 217 PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLG 296 (488)
Q Consensus 217 ~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~ 296 (488)
+++|++.+++ ++.+|+.. ++.|...++++|.++|++||++||+||+|+.|.. ..++. .+
T Consensus 113 ~~~l~~~i~~-------------~~~~v~~~---~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~-~~~~~----~~ 171 (367)
T 3nyt_A 113 PQLLEAAITP-------------RTKAIIPV---SLYGQCADFDAINAIASKYGIPVIEDAAQSFGAS-YKGKR----SC 171 (367)
T ss_dssp GGGTGGGCCT-------------TEEEECCB---CGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCE-ETTEE----TT
T ss_pred HHHHHHhcCc-------------CCcEEEee---CCccChhhHHHHHHHHHHcCCEEEEECccccCCe-ECCee----cc
Confidence 8888877643 34455533 4568888999999999999999999999986544 22221 11
Q ss_pred CCCCCccEEEccc--ccccCCc--ccEEEe-CHHHHHHHHhhCCCC----------cccCCCCHHHHHHHHHHHHHHhcc
Q 040324 297 VDTSDVDIMMGTF--SKSFGSY--GGYIAG-SKELIQYLKYNCPAH----------LYATSISPPAAEQIISAIQVVIGE 361 (488)
Q Consensus 297 v~p~~~di~~~t~--sK~~g~~--Gg~i~~-~~~~~~~~~~~~~~~----------~~~~~~~p~~~aa~~a~L~~i~~~ 361 (488)
.-. |+++.|| +|.+|+. ||++++ ++++.+.++...... .++..+++..++++++.++.+
T Consensus 172 ~~~---di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--- 245 (367)
T 3nyt_A 172 NLS---TVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--- 245 (367)
T ss_dssp SSS---SEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH---
T ss_pred CCC---CEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH---
Confidence 111 7888887 8999873 488877 578888776543210 123458888888888887754
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCC----C-CeEEEEeCCcchHHHHHHHHHHCCceEEeecCC-Cc--
Q 040324 362 DGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND----S-PVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFP-AT-- 433 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~-~~-- 433 (488)
++..++.+++.+++++.|++.++.+..... . ..+++.+. ...++.+.|.++||.+.+ +|+ ..
T Consensus 246 ------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~L~~~GI~~~~-~~~~~~~~ 315 (367)
T 3nyt_A 246 ------EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---NRESVQASLKAAGVPTAV-HYPIPLNK 315 (367)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS---SHHHHHHHHHHHTCCCBC-SCSSCGGG
T ss_pred ------HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC---CHHHHHHHHHHCCCceec-cCCCcccc
Confidence 567778888899999999998765432211 1 23444443 466889999999998875 333 10
Q ss_pred --cC-------------CCCeEEEeecCCCCHHHHHHHHHHHHH
Q 040324 434 --PL-------------LLARARICISASHTKEDLIEALEVISR 462 (488)
Q Consensus 434 --~~-------------~~~~iRi~~~~~~t~edid~~l~~l~~ 462 (488)
+. ....+|+.++...|++|+++++++|.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 316 QPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp SGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred ChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 00 125799999999999999999999865
No 175
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.94 E-value=3e-25 Score=227.47 Aligned_cols=326 Identities=15% Similarity=0.149 Sum_probs=221.4
Q ss_pred CccchHHHHHHHH-HcCCCCCCcccCCCChhhH--HHHH-HHHHHHhCCCCeEE-eCCcHHHHhhhhhcccCCCcEEEEe
Q 040324 117 DEYCTPRVIDSLK-KYSHSTCSSRVDGGTLALH--NELE-ECVARFVGKPAAIV-FGMGYVTNSSILPVLMGKGSLIISD 191 (488)
Q Consensus 117 ~~~v~~a~~~~l~-~~~~~~~~~~~~~g~~~~~--~~l~-~~la~~~g~~~~i~-~~sGs~a~~~~~~~~~~~~~~Vl~~ 191 (488)
+|.+.+|+.+++. .+..++.+++...|..... ++++ +.+++++|.+.+.+ ++||++|+..++.++.++||.|++.
T Consensus 58 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~ 137 (447)
T 3h7f_A 58 PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGL 137 (447)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEec
Confidence 6889999988885 5555555555444443322 4555 89999999987766 8999999999999999999999999
Q ss_pred CCCchHH-HHHH--Hh--cCCeEEEeeC------CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChH
Q 040324 192 SLNHNSI-VNGA--RG--SGATIRVFQH------NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLP 260 (488)
Q Consensus 192 ~~~h~~~-~~~~--~~--~g~~v~~~~~------~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~ 260 (488)
.+.|+++ ..+. .. .+..+..++. .|+++|++.+++. ..+++++..+.++..+ +++
T Consensus 138 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----------~~~~i~~~~~~~~~~~---~l~ 203 (447)
T 3h7f_A 138 DLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEF-----------RPKVIIAGWSAYPRVL---DFA 203 (447)
T ss_dssp CGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHH-----------CCSEEEEECSSCCSCC---CHH
T ss_pred CcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhc-----------CCeEEEEcCCCCCCcc---CHH
Confidence 9998762 1111 11 2345555552 3899999988652 1344555466664433 999
Q ss_pred HHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCC-cccEEEeCHHHHHHHHhhCCCCcc
Q 040324 261 EIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS-YGGYIAGSKELIQYLKYNCPAHLY 339 (488)
Q Consensus 261 ~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~-~Gg~i~~~~~~~~~~~~~~~~~~~ 339 (488)
+|+++|++||++||+||+|+.|.. ..|.. .+.. ...|+++.|++|++++ .||++++++++++.+......+.+
T Consensus 204 ~i~~l~~~~g~lli~Dea~~~g~~-~~g~~----~~~~-~~~di~~~s~sK~l~G~~gG~i~~~~~~~~~l~~~~~~~~~ 277 (447)
T 3h7f_A 204 AFRSIADEVGAKLLVDMAHFAGLV-AAGLH----PSPV-PHADVVSTTVHKTLGGGRSGLIVGKQQYAKAINSAVFPGQQ 277 (447)
T ss_dssp HHHHHHHHHTCEEEEECTTTHHHH-HTTSS----CCST-TTCSEEEEESSGGGCCCSCEEEEECGGGHHHHHHHHTTTTC
T ss_pred HHHHHHHHcCCEEEEECCchhhhh-cCCCC----CCCC-CCCcEEEecCCcCCCCCCeEEEEECHHHHHHHhhhcCCccc
Confidence 999999999999999999864322 22221 1111 2458999999999974 469999999998888765444444
Q ss_pred cCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-----CCeecCC-CCCCeEEEEeCCcc-hHH
Q 040324 340 ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-----GFEVLGD-NDSPVMPIMVYNPA-KVS 412 (488)
Q Consensus 340 ~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~-~~~~~~~~~~~~~~-~~~ 412 (488)
++ .+...++++.+++..+. .++.+++.+++.++.+++.+.|++. |+++... ..++++++.+.... ...
T Consensus 278 ~~-~~~~~~~a~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (447)
T 3h7f_A 278 GG-PLMHVIAGKAVALKIAA----TPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQ 352 (447)
T ss_dssp SS-CCHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCCHH
T ss_pred CC-ccHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCCHH
Confidence 32 33444445455555542 2245678899999999999999988 8888642 34567777664433 344
Q ss_pred HHHHHHHHCCceEEeecCC---CccCCCCeEEEeecCC----CCHHHHHHHHHHHHHHHHHh
Q 040324 413 SFSRECLKQNVAIVTVGFP---ATPLLLARARICISAS----HTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 413 ~~~~~l~~~Gi~v~~~~~~---~~~~~~~~iRi~~~~~----~t~edid~~l~~l~~~~~~~ 467 (488)
.+.+.|.++||.+.....| ..+...+.+||+++.. +|++|+++++++|++++++.
T Consensus 353 ~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 353 AAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp HHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 5556666669998721111 1233357799988654 68999999999999988654
No 176
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.94 E-value=4.3e-25 Score=227.93 Aligned_cols=323 Identities=17% Similarity=0.143 Sum_probs=223.2
Q ss_pred CCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEe-CCcHHHHhhhhhcc----cCCCc---
Q 040324 115 AADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVF-GMGYVTNSSILPVL----MGKGS--- 186 (488)
Q Consensus 115 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~-~sGs~a~~~~~~~~----~~~~~--- 186 (488)
+.+|.+.+++.+++..+.. +.......|..+...++++.+++++|.+.++++ ++|++++..++.++ ..+||
T Consensus 77 ~~~p~v~~~~~~~~~~~~~-~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~ 155 (474)
T 1wyu_B 77 KYNPKLHEEAARLFADLHP-YQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRT 155 (474)
T ss_dssp CCCCHHHHHHHHTTSSCCT-TSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cCCHHHHHHHHHHHHhcCC-CCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 4457777777665222211 110001234456778999999999998766545 67777776544332 34665
Q ss_pred --EEEEeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCC-CC
Q 040324 187 --LIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGEL-CK 258 (488)
Q Consensus 187 --~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~-~~ 258 (488)
.|+++.++|+++...++..|.+++.++.+ |+++|++++.+ ++++|++... +..|.+ .+
T Consensus 156 r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~-------------~t~~v~~~~p-n~~G~~~~~ 221 (474)
T 1wyu_B 156 RRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGP-------------HVAALMLTNP-NTLGLFERR 221 (474)
T ss_dssp CCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCST-------------TEEEEEECSS-CTTSCCCTT
T ss_pred CCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCC-------------CceEEEEECC-CCCcccCCC
Confidence 89999999999999999999999999876 88999888753 3455666655 458988 69
Q ss_pred hHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCc------c-cEEEeCHHHHHHHH
Q 040324 259 LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSY------G-GYIAGSKELIQYLK 331 (488)
Q Consensus 259 l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~------G-g~i~~~~~~~~~~~ 331 (488)
+++|+++|++||+++|+||+|+.+.+|.. ....++ .|+++.|++|+|+.+ | |++++++++++.+.
T Consensus 222 l~~i~~l~~~~g~~li~Dea~~~~~~g~~---~~~~~g-----~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~ 293 (474)
T 1wyu_B 222 ILEISRLCKEAGVQLYYDGANLNAIMGWA---RPGDMG-----FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLP 293 (474)
T ss_dssp HHHHHHHHHHHTCEEEEEGGGGGGTTTTC---CHHHHT-----CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCC
T ss_pred HHHHHHHHHHcCCEEEEeCchhhhhccCC---CcccCC-----CcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCC
Confidence 99999999999999999999985554321 111122 489999999999643 3 89999988876654
Q ss_pred h-h----CCCC------------cccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecC
Q 040324 332 Y-N----CPAH------------LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG 394 (488)
Q Consensus 332 ~-~----~~~~------------~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 394 (488)
. . ...+ ..+.+.++..++++++.++.+. .+..++..+++.++++++.+.|++.|+++..
T Consensus 294 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g----~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~ 369 (474)
T 1wyu_B 294 VPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG----LEGLKKAAALAVLNARYLKELLKEKGYRVPY 369 (474)
T ss_dssp SCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSS
T ss_pred CCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCcEecC
Confidence 1 0 0000 0112367777777777776541 1245666888999999999999998877633
Q ss_pred CCCC-CeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 395 DNDS-PVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 395 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
+... ..+.+.+.......++.++|+++||.+....|+. ...+.+||+++..+|++|+++++++|++++++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~~~--~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 370 DGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPL--IVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCST--TSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHHCCcccccccccc--ccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 2211 1133433223457789999999999864334432 12478999998888999999999999998866
No 177
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.94 E-value=1.8e-24 Score=221.05 Aligned_cols=319 Identities=15% Similarity=0.142 Sum_probs=223.5
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhh
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSIL 178 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~ 178 (488)
|+.+|+|+++.+ ++++.+++.+++.+. .. ...+...++++.+|++++.++++++++|++++..++
T Consensus 30 ~~~~i~~~~~~~------~~~~~~a~~~~~~~~-~~--------~~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~al 94 (437)
T 3bb8_A 30 GKSVVPPSGKVI------GTKELQLMVEASLDG-WL--------TTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLAL 94 (437)
T ss_dssp TTSCBCSCCCCC------CHHHHHHHHHHHHHC-CC--------BSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred CCccccCCCCCC------CHHHHHHHHHHHHcC-Cc--------CCChHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHHH
Confidence 667777753322 578889998888763 11 234567899999999999989999999999998877
Q ss_pred hcc---------cCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 040324 179 PVL---------MGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIM 243 (488)
Q Consensus 179 ~~~---------~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~ 243 (488)
.++ .++++.|+++.+.|+++...+...|++++.++.+ |+++|++.+.+ .++++
T Consensus 95 ~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~------------~~~~v 162 (437)
T 3bb8_A 95 TALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSD------------KTKAI 162 (437)
T ss_dssp HHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEETTTTEECGGGHHHHCCT------------TEEEE
T ss_pred HHhhhcccccccCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccCccCCcCHHHHHHhcCC------------CCeEE
Confidence 776 7889999999999999999999999999888754 78888887643 24555
Q ss_pred EEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCC---cccEE
Q 040324 244 VVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS---YGGYI 320 (488)
Q Consensus 244 vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~---~Gg~i 320 (488)
+++. ..|.+.++++|.++|+++|+++|+||+|+.|... .+. .++.. .|+++.||+|+.+. .||++
T Consensus 163 ~~~~----~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~----~~~~~---~d~~~~s~~~~k~l~~g~gg~~ 230 (437)
T 3bb8_A 163 MIAH----TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTY-DGK----MAGTF---GDIGTVSFYPAKHITMGEGGAV 230 (437)
T ss_dssp EEEC----GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE-TTE----ETTSS---SSEEEEECSTTSSSCCSSCEEE
T ss_pred EEeC----CCCChhcHHHHHHHHHHcCCEEEEECccccCceE-CCe----ecccc---cCEEEEECcCCcCCCCCCeEEE
Confidence 5554 2356679999999999999999999999965443 222 12211 26777787555433 34888
Q ss_pred EeCHHH-HHHHHh---hCCC----------------------------------CcccCCCCHHHHHHHHHHHHHHhccC
Q 040324 321 AGSKEL-IQYLKY---NCPA----------------------------------HLYATSISPPAAEQIISAIQVVIGED 362 (488)
Q Consensus 321 ~~~~~~-~~~~~~---~~~~----------------------------------~~~~~~~~p~~~aa~~a~L~~i~~~~ 362 (488)
+++++. .+.+.. .... ..+...++++.+++++++|+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~---- 306 (437)
T 3bb8_A 231 FTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERI---- 306 (437)
T ss_dssp EESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHH----
T ss_pred EeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHH----
Confidence 888544 333221 1110 0111235678888888887754
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCC-----C-CeEEEEeCCc--chHHHHHHHHHHCCceEEeecCCCc
Q 040324 363 GSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDND-----S-PVMPIMVYNP--AKVSSFSRECLKQNVAIVTVGFPAT 433 (488)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-----~-~~~~~~~~~~--~~~~~~~~~l~~~Gi~v~~~~~~~~ 433 (488)
++..++.+++.+++++.|+++ |+.+..... + ..+.+.+..+ ....++.+.|.++||.+.....+..
T Consensus 307 -----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~ 381 (437)
T 3bb8_A 307 -----EEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNL 381 (437)
T ss_dssp -----HHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSG
T ss_pred -----HHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCccc
Confidence 456666688889999999987 665543211 2 2344444332 3567899999999999886432211
Q ss_pred ---cCC------------------CCeEEEeecCCCCHHHHHHHHHHHHHHHH
Q 040324 434 ---PLL------------------LARARICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 434 ---~~~------------------~~~iRi~~~~~~t~edid~~l~~l~~~~~ 465 (488)
|.. .+.+||+++..+|++|+|+++++|+++++
T Consensus 382 ~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 382 TRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp GGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 110 12599999999999999999999988753
No 178
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.94 E-value=1.7e-26 Score=247.22 Aligned_cols=398 Identities=14% Similarity=0.085 Sum_probs=248.3
Q ss_pred CCCCCccc-ccCcHHHHHHHHHhhhhcccCCCccCCCCceEEEeeccccCCcccccccCCcceeEEeccccccCCCCCCc
Q 040324 40 NLQGYAPI-CLGLEDFYIRRLYNRVQDCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADE 118 (488)
Q Consensus 40 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~~~~dr~~~~~~~~~~~~~~g~~~ld~~s~~~lg~~~~~~ 118 (488)
..++|.++ +++|+.||.+++++++.+++++ .+...+..+.+...+.+..+...++.. .-|+.. +|
T Consensus 75 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~----~~~pi~~al~~~~~~~~~~~~~Pgh~~---------g~~~~~-~p 140 (730)
T 1c4k_A 75 KIFHIIDLENKFDATVNAREIETAVNNYEDS----ILPPFFKSLKEYVSRYLIQFDCPGHQG---------GQYYRK-HP 140 (730)
T ss_dssp TCCEEEECC--CCSTTHHHHHHHHHHHHHHH----HSCHHHHHHHHHHTSCCCCCSSSTTTT---------TTTGGG-SH
T ss_pred hcCeeEecccCCcHHHHHHHHHHHHHHHHhc----CCchHHHHHHHHHhcCCcccccCcccc---------ccccCC-cc
Confidence 45688998 9999999999999999998864 233444333333333222222211000 000000 01
Q ss_pred cchHHHHHHH----HHcCCCC--CCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcH-HHHhhhhhcccCCCcEEEEe
Q 040324 119 YCTPRVIDSL----KKYSHST--CSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGY-VTNSSILPVLMGKGSLIISD 191 (488)
Q Consensus 119 ~v~~a~~~~l----~~~~~~~--~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs-~a~~~~~~~~~~~~~~Vl~~ 191 (488)
+-+...+.+ -+..... ...-...+....+.++++.+|+++|.+.++++++|+ ++|..++.+++++||.|+++
T Consensus 141 -~g~~~~~~~g~~~~~~di~~~~~~l~~l~~~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~ 219 (730)
T 1c4k_A 141 -AGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFD 219 (730)
T ss_dssp -HHHHHHHHHCSHHHHSCCCTTSGGGCBTTTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred -hhhHHHhhcchhhhhHHhhhhhccCCCccCChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 011222222 0111111 000112244567799999999999999888898887 67888899999999999999
Q ss_pred CCCchHHHHH-HHhcCCeEEEeeC--C--------CHHHH-HHHHHHHHhcCCCC-CCCCCc-eEEEEEcCcCCCCCCCC
Q 040324 192 SLNHNSIVNG-ARGSGATIRVFQH--N--------TPSHL-EEVLREQIAEGQPR-TRRPWK-KIMVVVEGIYSMEGELC 257 (488)
Q Consensus 192 ~~~h~~~~~~-~~~~g~~v~~~~~--~--------d~~~L-e~~l~~~~~~~~p~-~~~~~~-~~~vi~e~v~s~~G~~~ 257 (488)
.++|.++..+ ++++|++++.++. + |+++| ++.|++.+.+.+|+ .+.++. ++++++.+. ..|.+.
T Consensus 220 ~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~ 297 (730)
T 1c4k_A 220 RNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIY 297 (730)
T ss_dssp TTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEE
T ss_pred CCchHHHHHHHHHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeec
Confidence 9999999998 8889999877652 1 77888 33333332221010 001112 566666653 479999
Q ss_pred ChHHHHHHHHHcCcEEEEEcccccc-ccCCCCCC--cc--hhcCCCCCCccEEEcccccccCCc--ccEEEeCHHH----
Q 040324 258 KLPEIITICKRYKAYTYLDEAHSIG-AVGKTGRG--VC--ELLGVDTSDVDIMMGTFSKSFGSY--GGYIAGSKEL---- 326 (488)
Q Consensus 258 ~l~~l~~l~~~~g~~li~DE~~s~g-~~g~~g~~--~~--~~~~v~p~~~di~~~t~sK~~g~~--Gg~i~~~~~~---- 326 (488)
++++|.++|++||++|++||+|+.+ .+++.+++ .. +.++++ +..++++.|++|++++. ||++..+++.
T Consensus 298 dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D-~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~ 376 (730)
T 1c4k_A 298 NAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPE-DPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQ 376 (730)
T ss_dssp CHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTT-SCEEEEEECHHHHSSCCTTCEEEEEECGGGTTS
T ss_pred CHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCC-CCCEEEEECCCCCCCCCCCEEEEEecchhhcCc
Confidence 9999999999999999999999742 34332221 11 112332 11238899999999864 3666333221
Q ss_pred ---H--HHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh--CCCeecCCCC--
Q 040324 327 ---I--QYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQK--MGFEVLGDND-- 397 (488)
Q Consensus 327 ---~--~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~-- 397 (488)
+ ..+..... ...+++.++..+++..++++.+.. +...+.++++.++.+++++.|++ .|+.+..+..
T Consensus 377 ~~~i~~~~~~~~~~-~~~stsp~~~~iaal~aA~~~l~~----~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~ 451 (730)
T 1c4k_A 377 LRYCDHKHFNNSFN-LFMSTSPFYPMYAALDVNAAMQEG----EAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVN 451 (730)
T ss_dssp TTCCCHHHHHHHHH-HHSCSSCCHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEET
T ss_pred ccccCHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccc
Confidence 1 12221111 122345677777777778777631 13467788999999999999998 4777654321
Q ss_pred -----------------------------------CC--e----EEEEeCC-----------cchHHHHHHHHHHCCceE
Q 040324 398 -----------------------------------SP--V----MPIMVYN-----------PAKVSSFSRECLKQNVAI 425 (488)
Q Consensus 398 -----------------------------------~~--~----~~~~~~~-----------~~~~~~~~~~l~~~Gi~v 425 (488)
+. + +.+..+. ......+.+.|.++||.+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v 531 (730)
T 1c4k_A 452 GKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIP 531 (730)
T ss_dssp TEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCC
T ss_pred cccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEE
Confidence 10 1 2232211 135678999999999988
Q ss_pred EeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 426 VTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 426 ~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
... +...+|++++..+|++|+++++++|.++.+.+
T Consensus 532 ~~~-------~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 532 EKS-------DLNSILFLMTPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp SEE-------CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEC-------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 643 24689999999999999999999999988765
No 179
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.94 E-value=2.9e-24 Score=218.68 Aligned_cols=285 Identities=15% Similarity=0.144 Sum_probs=213.0
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHH----HHhcCCeEEEeeCCCHHHH
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNG----ARGSGATIRVFQHNTPSHL 220 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~----~~~~g~~v~~~~~~d~~~L 220 (488)
.+...++++.+++++|.++++++++|++|+..++.++.++||.|++..+.|+++... ++..|.++..++.+|+++|
T Consensus 113 ~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l 192 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGAL 192 (445)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHH
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHH
Confidence 466789999999999998999999999999888888889999999999999987764 4456899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCC
Q 040324 221 EEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTS 300 (488)
Q Consensus 221 e~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~ 300 (488)
++.+++ ++..+|+++++.++.|.+.++++|.++|++||++||+||+|+.+... . ... .
T Consensus 193 ~~ai~~------------~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~---~----~~~---~ 250 (445)
T 1qgn_A 193 ELALNQ------------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ---K----ALA---L 250 (445)
T ss_dssp HHHHHH------------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC---C----TTT---T
T ss_pred HHHhcc------------CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC---C----ccc---c
Confidence 999975 13267788999999999999999999999999999999999843321 1 111 2
Q ss_pred CccEEEcccccccCCc----ccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 040324 301 DVDIMMGTFSKSFGSY----GGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRE 376 (488)
Q Consensus 301 ~~di~~~t~sK~~g~~----Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~ 376 (488)
++|+++.|++|.+|+. +|++++++++++.+..... .++...+|..+..++..++.+ ..+.++..+
T Consensus 251 g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~--~~g~~~~~~~a~~~~~~l~~l---------~~r~~~~~~ 319 (445)
T 1qgn_A 251 GADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHH--ILGGALNPNAAYLIIRGMKTL---------HLRVQQQNS 319 (445)
T ss_dssp TCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHGGGH---------HHHHHHHHH
T ss_pred CCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHH--HhCCCCCHHHHHHHHHhHHHH---------HHHHHHHHH
Confidence 3589999999999874 5999999999888765432 244446777766666666543 456677778
Q ss_pred HHHHHHHHHHhCC-C-eecCC----------------CCCCeEEEEeCCc-chHHHHHHHHHHCCceEEeecCCC-----
Q 040324 377 NSNFFRSKLQKMG-F-EVLGD----------------NDSPVMPIMVYNP-AKVSSFSRECLKQNVAIVTVGFPA----- 432 (488)
Q Consensus 377 ~~~~l~~~L~~~g-~-~~~~~----------------~~~~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~~~~----- 432 (488)
+.+++.+.|++.. + .+..+ ..+.++.+.+... .....+.+.|...++.++..++..
T Consensus 320 ~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p 399 (445)
T 1qgn_A 320 TALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQP 399 (445)
T ss_dssp HHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECH
T ss_pred HHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeecc
Confidence 8889999998863 3 23322 1457888887643 235566666543344433211100
Q ss_pred ---------------ccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 433 ---------------TPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 433 ---------------~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
....++.+||++. .||+|.+++.|+++++.
T Consensus 400 ~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 400 AIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp HHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 0122479999985 57899999999998864
No 180
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.94 E-value=7.3e-24 Score=213.61 Aligned_cols=313 Identities=14% Similarity=0.184 Sum_probs=222.7
Q ss_pred CccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcc-cCCCcEEEEeCCCc
Q 040324 117 DEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL-MGKGSLIISDSLNH 195 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~-~~~~~~Vl~~~~~h 195 (488)
++++.+++.+++++. +.. ...+...++++.+|++++.+.++++++|++++..++.++ .++|+.|+++.+.|
T Consensus 11 ~~~v~~a~~~~~~~~---~~~-----~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~ 82 (394)
T 1o69_A 11 GGNELKYIEEVFKSN---YIA-----PLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTF 82 (394)
T ss_dssp -CCHHHHHHHHHHHT---TTS-----CTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHHcC---Ccc-----CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCcc
Confidence 578889999988762 110 112456899999999999988999999999998888888 88999999999999
Q ss_pred hHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcC
Q 040324 196 NSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK 270 (488)
Q Consensus 196 ~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g 270 (488)
+++...++..|++++.++.+ |+++|++.+++.. ...++++++ + +.|...++++|.++|++||
T Consensus 83 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~---------~~~~~v~~~-~---~~G~~~~l~~i~~l~~~~~ 149 (394)
T 1o69_A 83 IASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECE---------KKPKALILT-H---LYGNAAKMDEIVEICKEND 149 (394)
T ss_dssp GGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCS---------SCCCEEEEE-C---GGGCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhccc---------CCceEEEEE-C---CCCChhhHHHHHHHHHHcC
Confidence 99999999999999988853 7899998887510 013444444 3 4678889999999999999
Q ss_pred cEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cEEEeC-HHHHHHHHhhCCCCc-----c----
Q 040324 271 AYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYIAGS-KELIQYLKYNCPAHL-----Y---- 339 (488)
Q Consensus 271 ~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i~~~-~~~~~~~~~~~~~~~-----~---- 339 (488)
++||+||+|+.|.. +.+.....+ .++|+...|.+|.+++.+ |+++++ +++++.+........ +
T Consensus 150 ~~li~Dea~~~g~~-~~~~~~~~~-----~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 223 (394)
T 1o69_A 150 IVLIEDAAEALGSF-YKNKALGTF-----GEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLD 223 (394)
T ss_dssp CEEEEECTTCTTCE-ETTEETTSS-----SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSS
T ss_pred CEEEEECcCcccce-eCCcccccc-----cCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccc
Confidence 99999999985432 223211111 235677555589887544 999995 888888865432110 1
Q ss_pred ---cCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCC----CC-CeEEEEeCCc---
Q 040324 340 ---ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDN----DS-PVMPIMVYNP--- 408 (488)
Q Consensus 340 ---~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~-~~~~~~~~~~--- 408 (488)
...+++..++.++..++.+ ++..++++++.+++.+.|+++ +.+..+. .+ +++++.+...
T Consensus 224 ~g~~~~~~~~~aa~~l~~l~~l---------~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~ 293 (394)
T 1o69_A 224 YGYNYRLSNVLGAIGVAQMEVL---------EQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNE 293 (394)
T ss_dssp CCCBCBCCHHHHHHHHHHHTTH---------HHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGG
T ss_pred cCcccCcCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhc
Confidence 0115666666666655543 567888999999999999987 6554432 12 2566766532
Q ss_pred ------------------chHHHHHHHHHHCCceEEeecCCC--ccCCC---------------CeEEEeecCCCCHHHH
Q 040324 409 ------------------AKVSSFSRECLKQNVAIVTVGFPA--TPLLL---------------ARARICISASHTKEDL 453 (488)
Q Consensus 409 ------------------~~~~~~~~~l~~~Gi~v~~~~~~~--~~~~~---------------~~iRi~~~~~~t~edi 453 (488)
....++.+.|.++||.+.+...|. .|... ..+++..+..+|++|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi 373 (394)
T 1o69_A 294 LNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDV 373 (394)
T ss_dssp SCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHH
T ss_pred cccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHH
Confidence 256689999999999998643221 11100 3456666788999999
Q ss_pred HHHHHHHHHHHHH
Q 040324 454 IEALEVISRIGDL 466 (488)
Q Consensus 454 d~~l~~l~~~~~~ 466 (488)
++++++|+++++.
T Consensus 374 ~~~~~~l~~~~~~ 386 (394)
T 1o69_A 374 YEISKLILKSIKA 386 (394)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987643
No 181
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.93 E-value=6.3e-24 Score=215.33 Aligned_cols=281 Identities=17% Similarity=0.196 Sum_probs=207.5
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHH----HhcCCeEEEeeCCCHHH
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGA----RGSGATIRVFQHNTPSH 219 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~----~~~g~~v~~~~~~d~~~ 219 (488)
..+...++++.++++++.++++++++|++|+..++.++.++++.|+++.+.|+++...+ +..|.+++.++.+ +++
T Consensus 54 ~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 132 (412)
T 2cb1_A 54 KDPTAKALEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEA 132 (412)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHH
Confidence 34677999999999999988999999999998888888899999999999999877654 3468888888765 788
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT 299 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p 299 (488)
|++.+++ ++.+|+++++.++.|.+.++++|+++|++||+++|+||+|+.+++. ... .+
T Consensus 133 l~~~i~~-------------~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~--~~~----~~--- 190 (412)
T 2cb1_A 133 VREALSA-------------KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL--CRP----LA--- 190 (412)
T ss_dssp HHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTS--CCG----GG---
T ss_pred HHHHhcc-------------CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccc--CCc----cc---
Confidence 8777643 4557778999999999999999999999999999999999844221 111 11
Q ss_pred CCccEEEcccccccCCcc----cEEEeCH---------------------------HHHHHHHhhC-CCCcccCCCCHHH
Q 040324 300 SDVDIMMGTFSKSFGSYG----GYIAGSK---------------------------ELIQYLKYNC-PAHLYATSISPPA 347 (488)
Q Consensus 300 ~~~di~~~t~sK~~g~~G----g~i~~~~---------------------------~~~~~~~~~~-~~~~~~~~~~p~~ 347 (488)
.+.|+++.|++|.++++| |+++.++ ++.+.++... .. ++..++|..
T Consensus 191 ~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~--~g~~~~~~~ 268 (412)
T 2cb1_A 191 WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSL--CGMALSPFN 268 (412)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTT--TCCCCCHHH
T ss_pred cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHh--cCCCCChHH
Confidence 235899999999997643 4444552 4445555432 21 233467887
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeec-CC----------------CCCCeEEEEeCCcc
Q 040324 348 AEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVL-GD----------------NDSPVMPIMVYNPA 409 (488)
Q Consensus 348 ~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~----------------~~~~~~~~~~~~~~ 409 (488)
++.++..++.+ +...++..++.+++.+.|.+. ++..+ .+ ..+.++.+.+ .
T Consensus 269 a~~~~~~l~~l---------~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-- 336 (412)
T 2cb1_A 269 AYLLFQGLETV---------ALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-- 336 (412)
T ss_dssp HHHHHHHGGGH---------HHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S--
T ss_pred hHHHHcCCchH---------HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C--
Confidence 77777666544 456667788999999999886 66532 22 2346777777 3
Q ss_pred hHHHHHHHHHHCCceEEeec---------CCCcc--------------CCCCeEEEeecCCCCHHHHHHHHHHHHH
Q 040324 410 KVSSFSRECLKQNVAIVTVG---------FPATP--------------LLLARARICISASHTKEDLIEALEVISR 462 (488)
Q Consensus 410 ~~~~~~~~l~~~Gi~v~~~~---------~~~~~--------------~~~~~iRi~~~~~~t~edid~~l~~l~~ 462 (488)
....+.+.|.+.||.+ ... +|... ...+.+|++++..+|+++++.++++|++
T Consensus 337 ~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 337 DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 4455666677779988 532 33211 1157999999999999999999999864
No 182
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.93 E-value=1.7e-24 Score=217.95 Aligned_cols=283 Identities=13% Similarity=0.119 Sum_probs=211.8
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHH----HhcCCeEEEeeCCCHHH
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGA----RGSGATIRVFQHNTPSH 219 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~----~~~g~~v~~~~~~d~~~ 219 (488)
..+...++++.+|++++.++++++++|++|+..++..+..+++.|++..+.|+++...+ +..|.++..++.+|+++
T Consensus 64 ~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 143 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDA 143 (392)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHH
Confidence 34667899999999999999999999999998888888899999999999999887665 56789999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT 299 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p 299 (488)
|++.+++ ++.+|+++++.++.|.+.++++|+++|++||++||+||+|+.+... . ..+
T Consensus 144 l~~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~---~----~~~--- 200 (392)
T 3qhx_A 144 VRAAIRP-------------TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ---Q----PLS--- 200 (392)
T ss_dssp HHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC---C----GGG---
T ss_pred HHHhhCC-------------CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccC---C----hHH---
Confidence 9988764 4567778999999999999999999999999999999999843221 1 112
Q ss_pred CCccEEEcccccccCCc----ccEEEeC-HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q 040324 300 SDVDIMMGTFSKSFGSY----GGYIAGS-KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARI 374 (488)
Q Consensus 300 ~~~di~~~t~sK~~g~~----Gg~i~~~-~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~ 374 (488)
.++|+++.|++|.+|++ +|+++++ +++.+.+...... ++...+|..+++++..++.+ ....++.
T Consensus 201 ~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~l---------~~~~~~~ 269 (392)
T 3qhx_A 201 LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG--AGAVPGPFDAYLTMRGLKTL---------VLRMQRH 269 (392)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTH---------HHHHHHH
T ss_pred hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhhHH---------HHHHHHH
Confidence 23489999999999874 4888887 6888877654432 33447888888777777654 4567778
Q ss_pred HHHHHHHHHHHHhCC-Ce-ecCC----------------CCCCeEEEEeCC-cchHHHHHHHHHHCCceEEeecC-----
Q 040324 375 RENSNFFRSKLQKMG-FE-VLGD----------------NDSPVMPIMVYN-PAKVSSFSRECLKQNVAIVTVGF----- 430 (488)
Q Consensus 375 ~~~~~~l~~~L~~~g-~~-~~~~----------------~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~~----- 430 (488)
.++.+.+.+.|++.. +. +..+ ..+.++.+.+.. ......+.+.|...|+.+...+.
T Consensus 270 ~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~ 349 (392)
T 3qhx_A 270 SENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIE 349 (392)
T ss_dssp HHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEE
T ss_pred HHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceee
Confidence 888888999888752 21 2111 125678888865 24556777777666665543211
Q ss_pred -CCc-----------cCCCCeEEEeecCCCCHHHHHHHHHHH
Q 040324 431 -PAT-----------PLLLARARICISASHTKEDLIEALEVI 460 (488)
Q Consensus 431 -~~~-----------~~~~~~iRi~~~~~~t~edid~~l~~l 460 (488)
|.. ....+.+||++....++++++.+.++|
T Consensus 350 ~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 350 HPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp CGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 111 123578999998777777777666654
No 183
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.93 E-value=5.6e-25 Score=227.38 Aligned_cols=321 Identities=15% Similarity=0.129 Sum_probs=217.7
Q ss_pred CccchHHHHHHHHH-cCCCCCCcccCCCChhhH----HHHHHHHHHHhCCCC-----eEEeCCcHHHHhhhhhcccCCCc
Q 040324 117 DEYCTPRVIDSLKK-YSHSTCSSRVDGGTLALH----NELEECVARFVGKPA-----AIVFGMGYVTNSSILPVLMGKGS 186 (488)
Q Consensus 117 ~~~v~~a~~~~l~~-~~~~~~~~~~~~g~~~~~----~~l~~~la~~~g~~~-----~i~~~sGs~a~~~~~~~~~~~~~ 186 (488)
++.+.+|+.+.+.. +..++.+++.. +..+.. +.+++.+++++|.+. .++++||+++|..++.+++++||
T Consensus 57 ~~~V~eA~~~~l~~~~~~g~p~~~~y-~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD 135 (483)
T 1rv3_A 57 SRAVLEALGSCLNNKYSLGYPGQRYY-GGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHG 135 (483)
T ss_dssp CHHHHHHHTSGGGTCCCCEETTEESS-SCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTC
T ss_pred CHHHHHHHHHHHhccCcccCCCcccc-CcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCC
Confidence 57777777777654 22233333322 222333 345588899999862 48999999888888888899999
Q ss_pred EEEEeCCCchHHHH--------HHHhcC--CeEEEeeC------CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcC
Q 040324 187 LIISDSLNHNSIVN--------GARGSG--ATIRVFQH------NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY 250 (488)
Q Consensus 187 ~Vl~~~~~h~~~~~--------~~~~~g--~~v~~~~~------~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~ 250 (488)
.|++..+.|+++.. ++..+| ...+.++. .|+++|++.+.+. .+++ |++ +..
T Consensus 136 ~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~-----------~tkl-Ii~-~~s 202 (483)
T 1rv3_A 136 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLF-----------HPKL-IIA-GTS 202 (483)
T ss_dssp EEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-----------CCSE-EEE-CCS
T ss_pred EEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhc-----------CCcE-EEE-eCC
Confidence 99999998887653 222333 45555532 2899999998742 1344 444 554
Q ss_pred CCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCC---CccEEEcccccccC-CcccEEEeCHH-
Q 040324 251 SMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTS---DVDIMMGTFSKSFG-SYGGYIAGSKE- 325 (488)
Q Consensus 251 s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~---~~di~~~t~sK~~g-~~Gg~i~~~~~- 325 (488)
+.. .+.++++|+++|+++|++||+|++|+.|.... ++.+. ..|+++.|++|+|+ ..||+++++++
T Consensus 203 n~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~---------~~~~~p~~~~div~~s~~K~l~GprgG~i~~~~~~ 272 (483)
T 1rv3_A 203 CYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVA---------GVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGV 272 (483)
T ss_dssp SCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHH---------TSSCCGGGTCSEEEEESSGGGCCCSCEEEEEECSB
T ss_pred cCC-CcCCHHHHHHHHHHcCCEEEEEccchhccccc---------CCCCCCCCCCcEEEecCcccCCCCCceEEEEcchh
Confidence 444 77799999999999999999999998554321 11111 45899999999994 45699988763
Q ss_pred --------------HHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCe
Q 040324 326 --------------LIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFE 391 (488)
Q Consensus 326 --------------~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 391 (488)
+.+.+........ ..+.+....++..++++.+. .+..+++.+++.++++++.+.|++.|+.
T Consensus 273 ~~~~~~~g~~~~y~~~~~~~~~~~~~~-~g~~~~~~iaal~~Al~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 347 (483)
T 1rv3_A 273 RSVDPKTGKEILYNLESLINSAVFPGL-QGGPHNHAIAGVAVALKQAM----TPEFKEYQRQVVANCRALSAALVELGYK 347 (483)
T ss_dssp CC-------CCBCCHHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hhhccccCcchhhHHHHHhhhhcCCcc-cCCccHHHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 4444443222112 22244555555566777652 2245778899999999999999999998
Q ss_pred ecCCC-CCCeEEEEeCCc-chHHHHHHHHHHCCceEEeecCC--CccCCCCeEEEeecCCCC----HHHHHHHHHHHHHH
Q 040324 392 VLGDN-DSPVMPIMVYNP-AKVSSFSRECLKQNVAIVTVGFP--ATPLLLARARICISASHT----KEDLIEALEVISRI 463 (488)
Q Consensus 392 ~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~~~--~~~~~~~~iRi~~~~~~t----~edid~~l~~l~~~ 463 (488)
+..+. .+.++++.+... ....++.+.|.+.||.+.....| ..+.+.+.+||+++..+| ++|+++++++|+++
T Consensus 348 ~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~ 427 (483)
T 1rv3_A 348 IVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRG 427 (483)
T ss_dssp EGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHH
Confidence 87653 235666666432 24567778888889999831111 123456799999976556 99999999999999
Q ss_pred HHH
Q 040324 464 GDL 466 (488)
Q Consensus 464 ~~~ 466 (488)
++.
T Consensus 428 l~~ 430 (483)
T 1rv3_A 428 IEL 430 (483)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 184
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.93 E-value=2.4e-25 Score=232.83 Aligned_cols=335 Identities=14% Similarity=0.065 Sum_probs=222.1
Q ss_pred eeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh----CC-------CCeEEeCC
Q 040324 101 RCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV----GK-------PAAIVFGM 169 (488)
Q Consensus 101 ~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~-------~~~i~~~s 169 (488)
.++||+.+.+ ++ .+|.+++++.+++... .+. ....|. .++++.+++++ +. ++++++++
T Consensus 104 ~~i~l~~g~~-~~--~~~~~v~a~~~~~~~~--~y~--~~~~g~----~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G 172 (533)
T 3f6t_A 104 DAVNYCHTEL-GL--NRDKVVAEWVNGAVAN--NYP--VPDRCL----VNTEKIINYFLQELSYKDANLAEQTDLFPTEG 172 (533)
T ss_dssp HHHHHHHHTT-CC--CHHHHHHHHHHHHHTC--SCC--SSSSCC----HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEH
T ss_pred hheeccCCCC-Cc--CCcHHHHHHHHHHHhC--CCC--CCcccH----HHHHHHHHHHHHHhcCCCCCCCCcceEEEECC
Confidence 4677764433 22 2577888888877652 111 011244 46666666655 32 23455555
Q ss_pred cHHHHhhhhhc-----ccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC---------CHHHHHHHHHHHHhcCCCCC
Q 040324 170 GYVTNSSILPV-----LMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN---------TPSHLEEVLREQIAEGQPRT 235 (488)
Q Consensus 170 Gs~a~~~~~~~-----~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~---------d~~~Le~~l~~~~~~~~p~~ 235 (488)
|++++..++.+ ++++||.|+++.|+|.++...++..|+.+..++.+ |+++|++.+..
T Consensus 173 ~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~--------- 243 (533)
T 3f6t_A 173 GTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP--------- 243 (533)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT---------
T ss_pred HHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC---------
Confidence 56666666665 78999999999999999999888899998888753 78888877642
Q ss_pred CCCCceEEEEEcCcCCCCCCCCCh---HHHHHHHH-HcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEccccc
Q 040324 236 RRPWKKIMVVVEGIYSMEGELCKL---PEIITICK-RYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSK 311 (488)
Q Consensus 236 ~~~~~~~~vi~e~v~s~~G~~~~l---~~l~~l~~-~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK 311 (488)
..++++++ ...+++|.+.+. ++|+++|+ +||+++|+||+|+ .+...+...... . .+.+++++||||
T Consensus 244 ---~~k~v~l~-~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~--~~~~~~~~~~~~---~-~~~~i~~~S~SK 313 (533)
T 3f6t_A 244 ---SIKALIVV-NPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYG--AFVPNFKSIYSV---V-PYNTMLVYSYSK 313 (533)
T ss_dssp ---TEEEEEEE-SSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTG--GGSTTCCCHHHH---S-GGGEEEEEESHH
T ss_pred ---CCeEEEEe-CCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcc--ccccCccCHhhc---C-CCCEEEEecCcc
Confidence 24545544 678889988875 48888888 6899999999998 555433332222 1 245799999999
Q ss_pred ccCCcc---cEEEeCHH-----HHHHH--------------------------------HhhCCCCcccCCCCHHHHHH-
Q 040324 312 SFGSYG---GYIAGSKE-----LIQYL--------------------------------KYNCPAHLYATSISPPAAEQ- 350 (488)
Q Consensus 312 ~~g~~G---g~i~~~~~-----~~~~~--------------------------------~~~~~~~~~~~~~~p~~~aa- 350 (488)
.+|.+| ||++++++ +++.+ ..... ..+.+.+++.+.+
T Consensus 314 ~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~--~~~~~~~~~~q~a~ 391 (533)
T 3f6t_A 314 LFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGL--YHTAGLSTPQQIME 391 (533)
T ss_dssp HHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTT--GGGCSCCHHHHHHH
T ss_pred cCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHH--hcccCCChHHHHHH
Confidence 999888 99988765 33321 11111 1222345544443
Q ss_pred HHHHHHHHhc----cCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCCc----------------ch
Q 040324 351 IISAIQVVIG----EDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNP----------------AK 410 (488)
Q Consensus 351 ~~a~L~~i~~----~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~----------------~~ 410 (488)
++.++..+.. +....+.++.+++++++.+++.+.|. +++.+..+.++.++++.+... ..
T Consensus 392 a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~ 470 (533)
T 3f6t_A 392 ALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFE 470 (533)
T ss_dssp HHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCC
Confidence 2224444430 12334667888899999999999997 777766666666666655321 13
Q ss_pred HHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 040324 411 VSSFSRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGIKY 471 (488)
Q Consensus 411 ~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~~~ 471 (488)
..+++..++ ++||.+.+...... +.+++||++ ..++++++++++++|.++++++..++
T Consensus 471 ~~~~~~~ll~~~GV~v~pg~~f~~--~~~~iRls~-a~~~~e~i~~~i~~L~~~l~~~~~~~ 529 (533)
T 3f6t_A 471 QVDFLLKLAEKNGVVLVDGVGFGA--KPGELRVSQ-ANLPTEDYALIGKQVLELLKEYYEEF 529 (533)
T ss_dssp HHHHHHHHHHHTTSSSCTTEEECS--STTEEEEES-SSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeCCcccCC--CCCEEEEEE-eeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666 56999987332222 257999998 34799999999999999998875444
No 185
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.93 E-value=6.7e-25 Score=223.11 Aligned_cols=326 Identities=13% Similarity=0.074 Sum_probs=217.1
Q ss_pred ceeEEecccccc---CCCCCCccchHHHHHHHHHcC-CCCCCcccCCCChhhHHHHHHHHHHHhCC-------C---CeE
Q 040324 100 SRCLNLGSYNYL---GFAAADEYCTPRVIDSLKKYS-HSTCSSRVDGGTLALHNELEECVARFVGK-------P---AAI 165 (488)
Q Consensus 100 ~~~ld~~s~~~l---g~~~~~~~v~~a~~~~l~~~~-~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~---~~i 165 (488)
..+|||+.+.|+ +....++.+.+|+.+++++.. ..+. ......++++.+++++.. + .++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-------~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 121 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYL-------PIDGIAAYDASVQKLLLGDDSPLIAAGRVVTA 121 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCC-------CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCC-------CCCCcHHHHHHHHHHhcCCCccccccCceEEE
Confidence 467999866332 323234688888888887621 1221 222236888888887743 2 345
Q ss_pred EeCCcHHHHhhh--hhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC----C---CHHHHHHHHHHHHhcCCCCCC
Q 040324 166 VFGMGYVTNSSI--LPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH----N---TPSHLEEVLREQIAEGQPRTR 236 (488)
Q Consensus 166 ~~~sGs~a~~~~--~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~----~---d~~~Le~~l~~~~~~~~p~~~ 236 (488)
++++|++++..+ +.++.++||.|+++.|+|.++...++..|.+++.++. + |+++|++.+++.
T Consensus 122 ~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~--------- 192 (420)
T 4f4e_A 122 QALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY--------- 192 (420)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC---------
T ss_pred ECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC---------
Confidence 555666666666 3455789999999999999999999999999999887 3 789999888642
Q ss_pred CCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCC--C--cchhcCCCCCCccEEEccc
Q 040324 237 RPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGR--G--VCELLGVDTSDVDIMMGTF 309 (488)
Q Consensus 237 ~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~--~--~~~~~~v~p~~~di~~~t~ 309 (488)
+.++.++++....+++|.+.+ +++|+++|++||+++|+||+|+ .+...+. . .....+. .+.+++++||
T Consensus 193 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~--~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~ 267 (420)
T 4f4e_A 193 -EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQ--GFGESIEADAAAVRLFAAA--NLNVFVSSSF 267 (420)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT--TSSSCTTGGGHHHHHHHHT--TCCEEEEEEC
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccc--cccCCcchhhHHHHHHHhc--CCCEEEEEeC
Confidence 114567888889999998865 7799999999999999999998 5554431 1 1222222 3347889999
Q ss_pred ccccCCcc---cEEEe---CHHHHHHH----HhhCCCCcccCCCCHHHHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHH
Q 040324 310 SKSFGSYG---GYIAG---SKELIQYL----KYNCPAHLYATSISPPAAEQIISAIQVVI-GEDGSCRGAQKLARIRENS 378 (488)
Q Consensus 310 sK~~g~~G---g~i~~---~~~~~~~~----~~~~~~~~~~~~~~p~~~aa~~a~L~~i~-~~~~~~~~~~~~~~~~~~~ 378 (488)
||.+|.+| ||++. ++++++.+ ...... ++. +.++..++++.+.|+... .+...++.++++++++++.
T Consensus 268 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 345 (420)
T 4f4e_A 268 SKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRT-NYS-NPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMR 345 (420)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT-TTS-SCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhc-ccC-CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877 88753 56655443 221111 111 134444444444443210 0000124577888999999
Q ss_pred HHHHHHHHhC----CCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHH
Q 040324 379 NFFRSKLQKM----GFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLI 454 (488)
Q Consensus 379 ~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid 454 (488)
+++.+.|++. |+.+..+.++.++++.+ ....+.+.|.++||.+.+ . .||+++ .+|+++++
T Consensus 346 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~l~~~gI~v~~----~-------~Ris~~-~~~~~~i~ 409 (420)
T 4f4e_A 346 NGLVERLKAAGIERDFSFINAQRGMFSYSGL----TSAQVDRLREEFGIYAVS----T-------GRICVA-ALNTRNLD 409 (420)
T ss_dssp HHHHHHHHHTTCSSCCTHHHHSCSSEEECCC----CHHHHHHHHHHHCEECCT----T-------SEEEGG-GCCTTTHH
T ss_pred HHHHHHHHhcCCCCCceeECCCccEEEEeCC----CHHHHHHHHHhCCEEecC----C-------CeEEEe-cCCHHHHH
Confidence 9999999987 56665555555544333 234555666677999884 1 288884 45888899
Q ss_pred HHHHHHHHHH
Q 040324 455 EALEVISRIG 464 (488)
Q Consensus 455 ~~l~~l~~~~ 464 (488)
+++++|++++
T Consensus 410 ~~~~~l~~~l 419 (420)
T 4f4e_A 410 VVANAIAAVL 419 (420)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 186
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1e-24 Score=226.70 Aligned_cols=331 Identities=13% Similarity=0.094 Sum_probs=230.9
Q ss_pred CCCccchHHHHHHHHHcCCCCCCc-ccCCCChhhHHHHHHHHHHHhCCC----CeEEeCCcHHHHhhhhhcccC-----C
Q 040324 115 AADEYCTPRVIDSLKKYSHSTCSS-RVDGGTLALHNELEECVARFVGKP----AAIVFGMGYVTNSSILPVLMG-----K 184 (488)
Q Consensus 115 ~~~~~v~~a~~~~l~~~~~~~~~~-~~~~g~~~~~~~l~~~la~~~g~~----~~i~~~sGs~a~~~~~~~~~~-----~ 184 (488)
+.++.+.+++.+++.++....... ....+..+...++++.+++++|.+ ..+++++|++++..++.++.. +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 345788899999998854322111 111133445567778888888876 477778888888777776643 3
Q ss_pred C---cEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCC
Q 040324 185 G---SLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE 255 (488)
Q Consensus 185 ~---~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~ 255 (488)
| +.|+++.+.|+++..+++..|.+++.++.+ |+++|++++.+ ++.+|+++.+.++.|.
T Consensus 155 g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-------------~~~~v~~~~p~nptG~ 221 (497)
T 3mc6_A 155 GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINK-------------NTVLLVGSAPNFPHGI 221 (497)
T ss_dssp CCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCS-------------SEEEEEEETTCTTTCC
T ss_pred CCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhh-------------CCEEEEEECCCCCCCc
Confidence 4 799999999999999999999999998754 47777776643 4567788888899999
Q ss_pred CCChHHHHHHHHHcCcEEEEEccccccccC---CCCCCcchhcCCCCCCccEEEccccccc-CCcc-cEEEeCHHHHHHH
Q 040324 256 LCKLPEIITICKRYKAYTYLDEAHSIGAVG---KTGRGVCELLGVDTSDVDIMMGTFSKSF-GSYG-GYIAGSKELIQYL 330 (488)
Q Consensus 256 ~~~l~~l~~l~~~~g~~li~DE~~s~g~~g---~~g~~~~~~~~v~p~~~di~~~t~sK~~-g~~G-g~i~~~~~~~~~~ 330 (488)
+.++++|+++|++||++||+||+|+.+... ..|.+....+.....++|+++.+++|.+ ++.| |+++.+++.+...
T Consensus 222 ~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~ 301 (497)
T 3mc6_A 222 ADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMH 301 (497)
T ss_dssp CCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTT
T ss_pred CCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhh
Confidence 999999999999999999999999832211 0122211112222345689999999996 4444 8888776554433
Q ss_pred HhhC-CC--------CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC--CCeecCCCCCC
Q 040324 331 KYNC-PA--------HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM--GFEVLGDNDSP 399 (488)
Q Consensus 331 ~~~~-~~--------~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~ 399 (488)
.... .. .....+.+....++..++++.+.. ....++.++..++.+++++.|++. |+.+..++...
T Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~----~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~ 377 (497)
T 3mc6_A 302 QYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE----NGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYS 377 (497)
T ss_dssp TSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSS
T ss_pred hhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCee
Confidence 1110 00 011112233334455566665521 145678889999999999999995 88887665566
Q ss_pred eEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCCc
Q 040324 400 VMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGIK 470 (488)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~~ 470 (488)
++.+... .....++.+.|.++||.+....+| +.+|++++ .+|++|+++++++|+++++++..+
T Consensus 378 ~v~~~~~-~~~~~~l~~~L~~~Gi~v~~~~~~------~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 378 VISFSSK-TLNIHELSDRLSKKGWHFNALQKP------VALHMAFT-RLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp EEEEECT-TTTHHHHHHHHHTTTCBCEECCSS------CCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred EEEEeCC-CCCHHHHHHHHHhCCEEEecCCCC------CeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 6655432 345778999999999988753332 35899998 789999999999999999887643
No 187
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.93 E-value=9.1e-24 Score=212.48 Aligned_cols=279 Identities=15% Similarity=0.175 Sum_probs=204.5
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHH----HHhcCCeEEEeeCCCHHHH
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNG----ARGSGATIRVFQHNTPSHL 220 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~----~~~~g~~v~~~~~~d~~~L 220 (488)
.+...++++.+|+++|.++++++++|++|+..++.++.++|+.|+++.+.|+++... ++..|.++..++.+|++++
T Consensus 58 ~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 137 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKV 137 (389)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHH
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHH
Confidence 567789999999999998999999999999888888889999999999999987766 4678999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCC
Q 040324 221 EEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTS 300 (488)
Q Consensus 221 e~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~ 300 (488)
++.+++ ++.+|+++++.++.|.+.++++|+++|++||+++|+||+|+.+.++ .. .+ .
T Consensus 138 ~~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~---~~----~~---~ 194 (389)
T 3acz_A 138 KAAWKP-------------NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL---KP----LE---L 194 (389)
T ss_dssp HHTCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC---CG----GG---T
T ss_pred HHhcCC-------------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccc---Cc----cc---c
Confidence 887753 3557778999999999999999999999999999999999854332 11 12 2
Q ss_pred CccEEEcccccccCCc----ccEEEeCH-HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 040324 301 DVDIMMGTFSKSFGSY----GGYIAGSK-ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIR 375 (488)
Q Consensus 301 ~~di~~~t~sK~~g~~----Gg~i~~~~-~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~ 375 (488)
++|+++.|++|.+|++ ||++++++ ++++.++..... ++.+.+|..++++++.|+.+ ....++..
T Consensus 195 ~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~l---------~~r~~~~~ 263 (389)
T 3acz_A 195 GADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKD--AGSLMAPMDAFLCARGMKTL---------PIRMQIHM 263 (389)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTH---------HHHHHHHH
T ss_pred CCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHcCccHH---------HHHHHHHH
Confidence 3589999999999875 58999988 888887654321 33447888777777777643 44566677
Q ss_pred HHHHHHHHHHHhCCC---------------eecC---CCCCCeEEEEeCCcchHHHHHHHHHHCCceEEee---------
Q 040324 376 ENSNFFRSKLQKMGF---------------EVLG---DNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTV--------- 428 (488)
Q Consensus 376 ~~~~~l~~~L~~~g~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~--------- 428 (488)
++...+.+.|++.+. .+.. ...+.++.+.+.. ..+..+.|.+.|+.+...
T Consensus 264 ~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~---~~~~~~~l~~~~i~~~~~s~G~~~sl~ 340 (389)
T 3acz_A 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS---FEAAKKLMEHLKVCTLAVSLGCVDTLI 340 (389)
T ss_dssp HHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---HHHHHHHHTTCSSSEEBSCCCCSSCEE
T ss_pred HHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC---HHHHHHHHHhCCCcEECcCCCCcccEe
Confidence 778888888876521 1100 1125677777643 334555565669988763
Q ss_pred cCCCcc--------------CCCCeEEEeecCCCCHHHHHHHHHHH
Q 040324 429 GFPATP--------------LLLARARICISASHTKEDLIEALEVI 460 (488)
Q Consensus 429 ~~~~~~--------------~~~~~iRi~~~~~~t~edid~~l~~l 460 (488)
.++..+ ...+.+|++++...+++.++.+.++|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al 386 (389)
T 3acz_A 341 EHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQAL 386 (389)
T ss_dssp ECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred eCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHH
Confidence 122111 12479999997665444444444443
No 188
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.93 E-value=5.4e-25 Score=221.80 Aligned_cols=326 Identities=14% Similarity=0.068 Sum_probs=214.1
Q ss_pred cceeEEecccccc---CCCCCCccchHHHHH-HHHHcCC-CCCCcccCCCChhhHHHHHHHHHHHhCC-------C---C
Q 040324 99 VSRCLNLGSYNYL---GFAAADEYCTPRVID-SLKKYSH-STCSSRVDGGTLALHNELEECVARFVGK-------P---A 163 (488)
Q Consensus 99 g~~~ld~~s~~~l---g~~~~~~~v~~a~~~-~l~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~---~ 163 (488)
...++||+.+.|+ +....++.+.+++.+ +++..+. .+ +......++++.++++++. + +
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y-------~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~ 97 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLY-------LPMEGLNCYRHAIAPLLFGADHPVLKQQRVA 97 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCC-------CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccC-------CCCCchHHHHHHHHHHHhcCCcccccccceE
Confidence 3457999866432 223223677778777 7664322 12 1222336888888888743 2 3
Q ss_pred eEEeCCcHHHHhhhh--hcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC----C---CHHHHHHHHHHHHhcCCCC
Q 040324 164 AIVFGMGYVTNSSIL--PVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH----N---TPSHLEEVLREQIAEGQPR 234 (488)
Q Consensus 164 ~i~~~sGs~a~~~~~--~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~----~---d~~~Le~~l~~~~~~~~p~ 234 (488)
++++++|++++..++ .++.+++|.|+++.|+|..+...++..|.+++.++. + |+++|++.+++.
T Consensus 98 i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~------- 170 (397)
T 3fsl_A 98 TIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL------- 170 (397)
T ss_dssp EEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC-------
T ss_pred EEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC-------
Confidence 455555666666663 445689999999999999999999999999999987 3 889999888642
Q ss_pred CCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCC--CC--cchhcCCCCCCccEEEc
Q 040324 235 TRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTG--RG--VCELLGVDTSDVDIMMG 307 (488)
Q Consensus 235 ~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g--~~--~~~~~~v~p~~~di~~~ 307 (488)
+.++.++++....+++|.+.+ +++|+++|++||++||+||+|+ .+...+ .. .....+ ..+.+++++
T Consensus 171 ---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~--~~~~~~~~~~~~~~~~~~--~~~~~i~~~ 243 (397)
T 3fsl_A 171 ---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ--GFGAGMEEDAYAIRAIAS--AGLPALVSN 243 (397)
T ss_dssp ---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT--TSSSCTTGGGHHHHHHHH--TTCCEEEEE
T ss_pred ---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCch--hhccCcccccHHHHHHHh--cCCCEEEEe
Confidence 114567778888999998865 6699999999999999999998 444332 11 122212 234478899
Q ss_pred ccccccCCcc---cEEEe---CHHHHHHHHhhC----CCCcccCCCCHHHHHHHHHHHHHHh-ccCCCchHHHHHHHHHH
Q 040324 308 TFSKSFGSYG---GYIAG---SKELIQYLKYNC----PAHLYATSISPPAAEQIISAIQVVI-GEDGSCRGAQKLARIRE 376 (488)
Q Consensus 308 t~sK~~g~~G---g~i~~---~~~~~~~~~~~~----~~~~~~~~~~p~~~aa~~a~L~~i~-~~~~~~~~~~~~~~~~~ 376 (488)
||||.+|.+| ||++. +++.++.+.... .. .+. +.++..++++.+.++.-. .....++.++.++++++
T Consensus 244 S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 321 (397)
T 3fsl_A 244 SFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRR-NYS-SPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILA 321 (397)
T ss_dssp ECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHT-TTS-SCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHh-ccC-CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999777 88863 566665442211 11 111 134444444433333100 00001245678889999
Q ss_pred HHHHHHHHHHhC----CCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHH
Q 040324 377 NSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKED 452 (488)
Q Consensus 377 ~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~ed 452 (488)
+.+++.+.|++. |+.+..+.++.++++.+ ....+.+.|.++||.+.+ . + ||+++ .+|+++
T Consensus 322 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~----g-----~--Ris~~-~~~~~~ 385 (397)
T 3fsl_A 322 MRQELVKVLSTEMPERNFDYLLNQRGMFSYTGL----SAAQVDRLREEFGVYLIA----S-----G--RMCVA-GLNTAN 385 (397)
T ss_dssp HHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCC----CHHHHHHHHHTTCEECCT----T-----C--EEEGG-GCCTTT
T ss_pred HHHHHHHHHHhcCCCCCceeecCCceEEEecCC----CHHHHHHHHHhCCEEECC----C-----C--eEEEE-ecCHhh
Confidence 999999999987 56665555555544433 234456666777999984 1 1 88884 457888
Q ss_pred HHHHHHHHHHH
Q 040324 453 LIEALEVISRI 463 (488)
Q Consensus 453 id~~l~~l~~~ 463 (488)
|++++++|+++
T Consensus 386 i~~~~~~l~~~ 396 (397)
T 3fsl_A 386 VQRVAKAFAAV 396 (397)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 189
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.93 E-value=5.4e-24 Score=216.65 Aligned_cols=308 Identities=16% Similarity=0.147 Sum_probs=218.9
Q ss_pred CccchHHHHHHHHHcCCCCCCcccCCCC-hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCc
Q 040324 117 DEYCTPRVIDSLKKYSHSTCSSRVDGGT-LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNH 195 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~~~~~~~~~~g~-~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h 195 (488)
++.+.+++.++++.. . ++. .+...++++.++++++.+.++++++|++++..++.++. +++.|+++.+.|
T Consensus 31 p~~~~~a~~~~~~~~-~--------y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~ 100 (424)
T 2po3_A 31 RARLYERLDRALDSQ-W--------LSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTF 100 (424)
T ss_dssp HHHHHHHHHHHHHHT-C--------CSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSC
T ss_pred hHHHHHHHHHHHhcC-C--------cccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCcc
Confidence 357788888887652 1 123 46678999999999999888889999999988777764 679999999999
Q ss_pred hHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHc
Q 040324 196 NSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRY 269 (488)
Q Consensus 196 ~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~ 269 (488)
+++...++..|.+++.++.+ |+++|++.+++ ..++++++. +.|.+.++++|.++|++|
T Consensus 101 ~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------------~~~~v~~~~----~tG~~~~l~~i~~la~~~ 164 (424)
T 2po3_A 101 AATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTP------------RTSAVVGVH----LWGRPCAADQLRKVADEH 164 (424)
T ss_dssp THHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCT------------TEEEEEEEC----GGGCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCc------------CCcEEEEEC----CCCCcCCHHHHHHHHHHc
Confidence 99999999999999998864 67777766542 244555442 467888999999999999
Q ss_pred CcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccc--cccCC-cccEEEeC-HHHHHHHHhhCC-CC----c--
Q 040324 270 KAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGS-YGGYIAGS-KELIQYLKYNCP-AH----L-- 338 (488)
Q Consensus 270 g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~s--K~~g~-~Gg~i~~~-~~~~~~~~~~~~-~~----~-- 338 (488)
|++||+||+|+.|.. ..+... +.-+ |+++.||+ |++++ .||+++++ +++++.+..... +. .
T Consensus 165 ~~~li~Dea~~~g~~-~~~~~~----~~~~---di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~ 236 (424)
T 2po3_A 165 GLRLYFDAAHALGCA-VDGRPA----GSLG---DAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSP 236 (424)
T ss_dssp TCEEEEECTTCTTCE-ETTEET----TSSS---SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCT
T ss_pred CCEEEEECccccCCe-ECCeec----cccc---CEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcccccccc
Confidence 999999999985432 333221 1112 68888998 87765 34999998 888887764321 10 0
Q ss_pred ---ccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecC-CCCC----CeEEEEeCC--
Q 040324 339 ---YATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLG-DNDS----PVMPIMVYN-- 407 (488)
Q Consensus 339 ---~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~----~~~~~~~~~-- 407 (488)
....+++..+++++..++. .++..++.+++.+++++.|+++ |+.+.. +.++ .++++.+..
T Consensus 237 ~~g~~~~~~~~~aa~~l~~~~~---------~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 307 (424)
T 2po3_A 237 AGGTNAKMSEAAAAMGLTSLDA---------FPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEAT 307 (424)
T ss_dssp TCCCBCCCCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHH
T ss_pred ccCcCCCcCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCcc
Confidence 1113566766666655543 3567788888899999999887 777765 2221 455565542
Q ss_pred -cchHHHHHHHHHHCCceEEeecCCCcc-------C----C-------CCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 408 -PAKVSSFSRECLKQNVAIVTVGFPATP-------L----L-------LARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 408 -~~~~~~~~~~l~~~Gi~v~~~~~~~~~-------~----~-------~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
.....++.+.|.++||.+.+...+... . . ...+|++++..+|++|+++++++|+++++..
T Consensus 308 ~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 308 TGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp HSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 234668889999999999862211100 0 0 1127777678999999999999999987654
No 190
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.93 E-value=1.9e-24 Score=221.57 Aligned_cols=333 Identities=14% Similarity=0.057 Sum_probs=222.2
Q ss_pred eeEEeccccccCCCCCCccchHHHHHHHHHcC----CCCCCcccCCCChhhHHHHHHHHHHHh-CCC-------CeEE--
Q 040324 101 RCLNLGSYNYLGFAAADEYCTPRVIDSLKKYS----HSTCSSRVDGGTLALHNELEECVARFV-GKP-------AAIV-- 166 (488)
Q Consensus 101 ~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~----~~~~~~~~~~g~~~~~~~l~~~la~~~-g~~-------~~i~-- 166 (488)
..|||+.+.|+.+.. ++.+.+++.+++.+.. .... .+.......++++.+++++ |.+ ++++
T Consensus 50 ~~i~l~~g~~~d~~~-~~~v~~av~~a~~~~~~~~~~~~~----~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~ 124 (448)
T 3meb_A 50 KKVNLGVGAYRDESG-KPWILPAVKEAEAIISSDLSKYNK----EYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQ 124 (448)
T ss_dssp TCEEESSCCCCCTTS-CCCCCHHHHHHHHHHHHCTTTTCC----SCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CeEEeecccccCCCC-CEechHHHHHHHHHHhhcccCCCC----CCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEE
Confidence 469998777766553 4678888888855432 1111 1122233478999999987 654 4555
Q ss_pred eCCcHHHHhh--hhhcccCCCcEEEEeCCCchHHHHHHH----hcCCeEEEeeC---C-----CHHHHHHHHHHHHhcCC
Q 040324 167 FGMGYVTNSS--ILPVLMGKGSLIISDSLNHNSIVNGAR----GSGATIRVFQH---N-----TPSHLEEVLREQIAEGQ 232 (488)
Q Consensus 167 ~~sGs~a~~~--~~~~~~~~~~~Vl~~~~~h~~~~~~~~----~~g~~v~~~~~---~-----d~~~Le~~l~~~~~~~~ 232 (488)
+++|++++.. .+.++..+++.|+++.|+|..+...++ ..|.+++.++. + |+++|++.+++.
T Consensus 125 t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~----- 199 (448)
T 3meb_A 125 SLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSA----- 199 (448)
T ss_dssp ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHS-----
T ss_pred CCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhC-----
Confidence 6777778744 455667899999999999999999999 88999888876 2 788888888752
Q ss_pred CCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCC----C-cchhcCCCCCCccE
Q 040324 233 PRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGR----G-VCELLGVDTSDVDI 304 (488)
Q Consensus 233 p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~----~-~~~~~~v~p~~~di 304 (488)
+.++.++++....+++|.+.+ +++|+++|++||+++|+||+|. .++..+. . .....+. .+..+
T Consensus 200 -----~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~--~~~~~~~~~~~~~~~~~~~~--~~~~i 270 (448)
T 3meb_A 200 -----PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQ--GFATGSFEADAFAVRMFVDA--GVEVL 270 (448)
T ss_dssp -----CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT--TTSSSCHHHHTHHHHHHHHT--TCCEE
T ss_pred -----CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccc--cccCCCcccCchhHHHHhhc--CCcEE
Confidence 124567777788899998876 6679999999999999999999 5554431 1 1111122 22357
Q ss_pred EEcccccccCCcc---cEE--Ee---------CH----HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHh-ccCCCc
Q 040324 305 MMGTFSKSFGSYG---GYI--AG---------SK----ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVI-GEDGSC 365 (488)
Q Consensus 305 ~~~t~sK~~g~~G---g~i--~~---------~~----~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~-~~~~~~ 365 (488)
++.||||.+|.+| ||+ ++ ++ ++++.+......... +.+...+.++.+.|+... ...-.+
T Consensus 271 ~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~l~~~~~~ 348 (448)
T 3meb_A 271 VAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWS--MSAIHGAYIVQVIVHDKRLLQMFYD 348 (448)
T ss_dssp EEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTS--SCCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred EEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccC--CccHHHHHHHHHHhcChHHHHHHHH
Confidence 7899999999877 887 55 45 566655543222111 245555555555543210 000001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC---------eecCCCCCCeEEEEeCCcchHHHHHHHHHH-CCceEEeecCCCccC
Q 040324 366 RGAQKLARIRENSNFFRSKLQKMGF---------EVLGDNDSPVMPIMVYNPAKVSSFSRECLK-QNVAIVTVGFPATPL 435 (488)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~L~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~~~~ 435 (488)
..++.+++++++++++.+.|++.|+ .+..+..+.+.+..+ + .+++..|++ +||.+.+. .
T Consensus 349 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~---~~~~~~ll~~~gV~v~~G----~-- 417 (448)
T 3meb_A 349 NVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGL--T---PEHVDYLKEKWSIYLVKA----G-- 417 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCC--C---HHHHHHHHHHHCEEECSG----G--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCC--C---HHHHHHHHHhCCEEEeCC----C--
Confidence 3567788899999999999998843 333344444433322 1 356666755 59999841 1
Q ss_pred CCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCCc
Q 040324 436 LLARARICISASHTKEDLIEALEVISRIGDLVGIK 470 (488)
Q Consensus 436 ~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~~ 470 (488)
.||++. .+++++|++++++|++++++++.+
T Consensus 418 ----gRis~a-~~~~~~i~~~~~~l~~~l~~~~~~ 447 (448)
T 3meb_A 418 ----GRMSMC-GLTESNCDYVAEAIHDAVTKLPFK 447 (448)
T ss_dssp ----GEEEGG-GCCTTTHHHHHHHHHHHHHHSCCC
T ss_pred ----cEEEEe-cCCHHHHHHHHHHHHHHHHhcccC
Confidence 389884 458888999999999999876543
No 191
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.93 E-value=1.3e-24 Score=225.58 Aligned_cols=328 Identities=13% Similarity=0.056 Sum_probs=227.3
Q ss_pred CccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCC-------CeEEeCCcHHHHhhhhhcccCC-----
Q 040324 117 DEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP-------AAIVFGMGYVTNSSILPVLMGK----- 184 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-------~~i~~~sGs~a~~~~~~~~~~~----- 184 (488)
+|.+.+++.+++.+....+..+ .+......++++.+++++|.+ ..+++++|++++..++.++..+
T Consensus 69 ~~~v~~~l~~~~~~~~~~~~~~---p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~ 145 (502)
T 3hbx_A 69 EPECDKLIMSSINKNYVDMDEY---PVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (502)
T ss_dssp CHHHHHHHHHTTTCBTTCTTTC---HHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCChhcC---hhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHH
Confidence 5677777777766543322111 123345567778889999876 2346788999987666655433
Q ss_pred ---Cc-----EEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcC
Q 040324 185 ---GS-----LIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY 250 (488)
Q Consensus 185 ---~~-----~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~ 250 (488)
|+ .|+++.+.|.++...++..|..++.++.+ |+++|++.+.+ ++.+|++....
T Consensus 146 ~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-------------~t~~v~~~~~~ 212 (502)
T 3hbx_A 146 KAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDE-------------NTICVAAILGS 212 (502)
T ss_dssp HHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCT-------------TEEEEEEEBSC
T ss_pred HhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhh-------------CCEEEEEecCC
Confidence 54 89999999999999999999999988743 78888887754 34556666667
Q ss_pred CCCCCCCChHHHHHHHHHc------CcEEEEEcccccccc---CCCCCCcchhcCCCCCCccEEEcccccccCC-cc-cE
Q 040324 251 SMEGELCKLPEIITICKRY------KAYTYLDEAHSIGAV---GKTGRGVCELLGVDTSDVDIMMGTFSKSFGS-YG-GY 319 (488)
Q Consensus 251 s~~G~~~~l~~l~~l~~~~------g~~li~DE~~s~g~~---g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~-~G-g~ 319 (488)
++.|.+.|+++|.++|+++ |++|++|++|+.+.. .+... +.+...++|++..+.+|.+++ .| |+
T Consensus 213 n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~-----~~~~~~~~D~v~~s~hK~l~~p~g~G~ 287 (502)
T 3hbx_A 213 TLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE-----WDFRLPLVKSINVSGHKYGLVYAGIGW 287 (502)
T ss_dssp TTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-----CSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred CCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc-----cccCCCCceEEEECcccccCCCCCeEE
Confidence 7789999999999999999 999999999984331 22211 112224679999999999854 34 66
Q ss_pred EEe-CHHHH-HHHHhhCC-------CCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC-
Q 040324 320 IAG-SKELI-QYLKYNCP-------AHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG- 389 (488)
Q Consensus 320 i~~-~~~~~-~~~~~~~~-------~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 389 (488)
++. +++.+ +.+..... .+.+..+.+.....+..++++.+. .+...++.++..++.++|.+.|++++
T Consensus 288 ~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg----~~g~~~~~~~~~~~a~~l~~~L~~~~~ 363 (502)
T 3hbx_A 288 VIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG----HEGYRNVMENCRENMIVLREGLEKTER 363 (502)
T ss_dssp EEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 554 44433 21111000 001111122223344455555542 11456788889999999999999986
Q ss_pred CeecCC-CCCCeEEEEeCCc--chHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 390 FEVLGD-NDSPVMPIMVYNP--AKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 390 ~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
+++..+ ...+++.+.+... ....++.+.|.++|+.+.....|....+..++||++...+|++|+|.+++.|+++++.
T Consensus 364 ~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~ 443 (502)
T 3hbx_A 364 FNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRE 443 (502)
T ss_dssp EEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 888765 5668888777543 3455899999999999876555655556679999999999999999999999999987
Q ss_pred hCC
Q 040324 467 VGI 469 (488)
Q Consensus 467 ~~~ 469 (488)
+..
T Consensus 444 l~~ 446 (502)
T 3hbx_A 444 LDE 446 (502)
T ss_dssp HHT
T ss_pred HHh
Confidence 743
No 192
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.93 E-value=4.7e-24 Score=215.88 Aligned_cols=283 Identities=17% Similarity=0.132 Sum_probs=208.6
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHHh----cCCeEEEeeCCCHHH
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARG----SGATIRVFQHNTPSH 219 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~----~g~~v~~~~~~d~~~ 219 (488)
..+...+|++.++++.|.++++++++|++|+..++.+++++||.|+++.+.|+.+...+.. .|.+++.++.+|+++
T Consensus 79 ~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 158 (414)
T 3ndn_A 79 GNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQ 158 (414)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHH
T ss_pred CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHH
Confidence 4567799999999999999999999999999888889999999999999999998776644 799999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT 299 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p 299 (488)
|++++++ ++.+|+++++.++.|.+.++++|+++|++||++||+||+|+.+.+.. . . .
T Consensus 159 l~~ai~~-------------~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~---~-~-~----- 215 (414)
T 3ndn_A 159 WERALSV-------------PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ---G-F-P----- 215 (414)
T ss_dssp HHHHTSS-------------CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC---C-G-G-----
T ss_pred HHHhcCC-------------CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC---c-h-h-----
Confidence 9988753 34467779999999999999999999999999999999998443321 0 0 1
Q ss_pred CCccEEEcccccccCCcc----cEEEeCHHHHH-HHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q 040324 300 SDVDIMMGTFSKSFGSYG----GYIAGSKELIQ-YLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARI 374 (488)
Q Consensus 300 ~~~di~~~t~sK~~g~~G----g~i~~~~~~~~-~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~ 374 (488)
.++|+++.|++|.+|+.| |+++++++.+. .++.... .++...+|..++.++..++.+ ..+.++.
T Consensus 216 ~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~--~~g~~~~~~~a~~~~~~l~~l---------~~r~~~~ 284 (414)
T 3ndn_A 216 LGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR--HTGPAMSAFNAWVLLKGLETL---------AIRVQHS 284 (414)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHH--HHCCCCCHHHHHHHHHHGGGH---------HHHHHHH
T ss_pred cCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHHH---------HHHHHHH
Confidence 234788999999998744 99999987765 5543222 233446777776666665543 5667788
Q ss_pred HHHHHHHHHHHHhCC-Ce-ecCC----------------CCCCeEEEEeCC-----cchHHHHHHHHHHCCceEEeecC-
Q 040324 375 RENSNFFRSKLQKMG-FE-VLGD----------------NDSPVMPIMVYN-----PAKVSSFSRECLKQNVAIVTVGF- 430 (488)
Q Consensus 375 ~~~~~~l~~~L~~~g-~~-~~~~----------------~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gi~v~~~~~- 430 (488)
.++.+++.+.|++.. +. +.-+ ..+.++++.+.. ......|.+.|...++.+...+.
T Consensus 285 ~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~ 364 (414)
T 3ndn_A 285 NASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAK 364 (414)
T ss_dssp HHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSS
T ss_pred HHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCC
Confidence 888999999998762 22 2111 135788888854 34566777777766655543221
Q ss_pred -----CC--------------ccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 431 -----PA--------------TPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 431 -----~~--------------~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
|. ....++.+||++.. |+.+.+++.|++++
T Consensus 365 sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 365 SLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp CEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred ceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 10 11235789999854 55666666666654
No 193
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.93 E-value=4.5e-25 Score=219.31 Aligned_cols=294 Identities=16% Similarity=0.125 Sum_probs=202.3
Q ss_pred CCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcE--EEEeCCCchHHHH--H-HHhcCCeEEEeeCC-
Q 040324 142 GGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSL--IISDSLNHNSIVN--G-ARGSGATIRVFQHN- 215 (488)
Q Consensus 142 ~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~--Vl~~~~~h~~~~~--~-~~~~g~~v~~~~~~- 215 (488)
++..+...++++.++++++.+..+++++|++++..++.++..+++. |+++.++|..... . ....|.+++.++.+
T Consensus 44 ~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 123 (359)
T 3pj0_A 44 YGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTAN 123 (359)
T ss_dssp TTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCTT
T ss_pred ccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCcC
Confidence 3566778999999999999988899999999998888888777664 7777777766532 1 24568998888764
Q ss_pred ---CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCC-CCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCC
Q 040324 216 ---TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSM-EGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTG 288 (488)
Q Consensus 216 ---d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~-~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g 288 (488)
|+++|++. . + +..+|++++++++ +|.+.+ +++|+++|++||++||+||+|..+.....+
T Consensus 124 ~~~d~~~l~~~-~------------~-~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~ 189 (359)
T 3pj0_A 124 QLLTIDDIKSL-R------------E-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQ 189 (359)
T ss_dssp SCCCHHHHHTC-S------------S-CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHT
T ss_pred CCcCHHHHHhc-c------------C-CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhC
Confidence 77777765 1 1 2345556666555 477776 555599999999999999998754432222
Q ss_pred CCcchhcCCCCCCccEEEcccccccCCcc-cEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchH
Q 040324 289 RGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRG 367 (488)
Q Consensus 289 ~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~ 367 (488)
....+.. ...|+++.|+||++++++ |++++++++++.++.....+..+.......++++..+++..
T Consensus 190 ~~~~~~~----~~~d~~~~s~sK~~~~~~gg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--------- 256 (359)
T 3pj0_A 190 KSAEEIC----ALFDSVYVSFYKGIGGIAGAILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKR--------- 256 (359)
T ss_dssp CCHHHHH----TTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHH---------
T ss_pred CCHHHhh----ccCCEEEEeccccCCCcceEEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHH---------
Confidence 2222221 234788889999997654 78889999998886532111111112334444445555542
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCeec-CCCCCCeEEEEeCCcc--hHHHHHHHHHHCCceEEeecCCCccCCCCeEEEe
Q 040324 368 AQKLARIRENSNFFRSKLQKM-GFEVL-GDNDSPVMPIMVYNPA--KVSSFSRECLKQNVAIVTVGFPATPLLLARARIC 443 (488)
Q Consensus 368 ~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~ 443 (488)
.+..++..++.+++.+.|+++ |+.+. .+..+.++++.+..+. ...++.+.|.++||.+.+...+.. .+.+++|++
T Consensus 257 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~-~~~~~~r~~ 335 (359)
T 3pj0_A 257 IGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS-ADVCAFEVS 335 (359)
T ss_dssp GGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE-TTEEEEEEE
T ss_pred HHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC-CCceEEEEE
Confidence 134456778889999999998 88774 4556778888776542 356888999999999987432222 345789998
Q ss_pred ecCC---CCHHHHHHHHHHHHHH
Q 040324 444 ISAS---HTKEDLIEALEVISRI 463 (488)
Q Consensus 444 ~~~~---~t~edid~~l~~l~~~ 463 (488)
+... .+.+++++++++|.++
T Consensus 336 i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 336 VGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp CCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ecCccccCCHHHHHHHHHHHHhc
Confidence 7533 6789999999888765
No 194
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.93 E-value=5.8e-24 Score=220.89 Aligned_cols=343 Identities=14% Similarity=0.087 Sum_probs=220.8
Q ss_pred EEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHH----HHHHHHHHhCC---CCeEEeCCcHHHHh
Q 040324 103 LNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNE----LEECVARFVGK---PAAIVFGMGYVTNS 175 (488)
Q Consensus 103 ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~---~~~i~~~sGs~a~~ 175 (488)
+++.|..|+++.... ....++.+.+.....+.. ...++..+...+ +++.+++++|. +..+++++|+++|.
T Consensus 96 ~~~~~~~yl~~~~~~-~~~~~v~~~~~~~~~n~~--~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~ 172 (497)
T 2qma_A 96 IFTQHPDCIAHLHTP-PLMPAVAAEAMIAALNQS--MDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQ 172 (497)
T ss_dssp CCTTSTTBCSSSCCC-CBHHHHHHHHHHHHHCCC--TTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHH
T ss_pred CCCCCCCeeEeCCCC-CcHHHHHHHHHHHhhccc--ccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHH
Confidence 455666677766553 344444444433222211 112233334444 45558899986 35777888899986
Q ss_pred hhhhcc----c---------CC------Cc-EEEEeCCCchHHHHHHHhcCC---eEEEeeCC-----CHHHHHHHHHHH
Q 040324 176 SILPVL----M---------GK------GS-LIISDSLNHNSIVNGARGSGA---TIRVFQHN-----TPSHLEEVLREQ 227 (488)
Q Consensus 176 ~~~~~~----~---------~~------~~-~Vl~~~~~h~~~~~~~~~~g~---~v~~~~~~-----d~~~Le~~l~~~ 227 (488)
.++.++ . .+ ++ .|+++...|.++..+++..|. +++.++.+ |+++|++.|++.
T Consensus 173 ~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~ 252 (497)
T 2qma_A 173 MGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQA 252 (497)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHH
Confidence 655542 2 11 35 899999999999999888866 78888876 899999999864
Q ss_pred HhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEc
Q 040324 228 IAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMG 307 (488)
Q Consensus 228 ~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~ 307 (488)
...+ ....+|++....+.+|.+.|+++|.++|++||++|++|++|+.+.+... ......++ .++|+++.
T Consensus 253 ~~~~-------~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~~~~~~gi--~~~D~i~~ 321 (497)
T 2qma_A 253 KAEG-------LIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS--HKSRLKGV--ERAHSISV 321 (497)
T ss_dssp HHTT-------CEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST--TGGGGTTG--GGCSEEEE
T ss_pred HHCC-------CcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc--chHhhcCc--ccCCEEEE
Confidence 3321 1233555566677789999999999999999999999999985444222 11112344 24588888
Q ss_pred ccccccCCcc--cEEEeC-HHHHHHHHhhCCCCcccCC---CCHHH----------HHHHHHHHHHHhccCCCchHHHHH
Q 040324 308 TFSKSFGSYG--GYIAGS-KELIQYLKYNCPAHLYATS---ISPPA----------AEQIISAIQVVIGEDGSCRGAQKL 371 (488)
Q Consensus 308 t~sK~~g~~G--g~i~~~-~~~~~~~~~~~~~~~~~~~---~~p~~----------~aa~~a~L~~i~~~~~~~~~~~~~ 371 (488)
+++|+++++. |+++.+ +..++.+... ..+.++.. .++.. +....++++.+ +.+..+++.
T Consensus 322 s~hK~l~~p~~~G~l~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l----g~~g~~~~~ 396 (497)
T 2qma_A 322 DFHKLFYQTISCGALLVNDKSNFKFLLHH-ADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV----GPKALGDMY 396 (497)
T ss_dssp ETTTTTCCCSSCEEEEESCGGGGGGGCC---------------------CCSCCCTHHHHHHHHHHT----CHHHHHHHH
T ss_pred cchhccCCCcceEEEEEeCHHHHHHhcCC-chhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh----CHHHHHHHH
Confidence 9999987643 777665 4433333211 11111100 11111 11233455554 223456788
Q ss_pred HHHHHHHHHHHHHHHhC-CCeecCCCCCCeEEEEeCCcc-----hHHHHHHHHHHCCceEEeecCCCccCCCCeEEEee-
Q 040324 372 ARIRENSNFFRSKLQKM-GFEVLGDNDSPVMPIMVYNPA-----KVSSFSRECLKQNVAIVTVGFPATPLLLARARICI- 444 (488)
Q Consensus 372 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~- 444 (488)
+++.+++++|.+.|++. ++++..++..+++.+.+.... ...++.+.|.++|+.+.+. ....+.+++|+++
T Consensus 397 ~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~---~~~~g~~~lRis~~ 473 (497)
T 2qma_A 397 DHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGE---TIVDGKTALKFTIL 473 (497)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEE---EEETTEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEe---eEECCEEEEEEEec
Confidence 89999999999999987 888766666677777765431 1346778888999988641 1123346899998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Q 040324 445 SASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 445 ~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+..+|++|+++++++|+++++++
T Consensus 474 ~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 474 NPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999988764
No 195
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.93 E-value=4.7e-23 Score=207.31 Aligned_cols=307 Identities=15% Similarity=0.150 Sum_probs=220.5
Q ss_pred cCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcc-------cC
Q 040324 111 LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL-------MG 183 (488)
Q Consensus 111 lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~-------~~ 183 (488)
++...-++++.+++.+++++. . + ...+...++++.+|++++.++++++++|++++..++.++ .+
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~-~-~-------~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~ 78 (390)
T 3b8x_A 8 LASSTWDDLEYKAIQSVLDSK-M-F-------TMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLK 78 (390)
T ss_dssp SCCCCCCHHHHHHHHHHHHHT-C-C-------SSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHcC-C-C-------CCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCC
Confidence 344444678888988888762 1 1 235667899999999999989999999999998888877 78
Q ss_pred CCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCC
Q 040324 184 KGSLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELC 257 (488)
Q Consensus 184 ~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~ 257 (488)
+++.|+++.+.|+++...++..|++++.++.+ |+++|++.+++ .+++++++. +.|.+.
T Consensus 79 ~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~------------~~~~v~~~~----~~g~~~ 142 (390)
T 3b8x_A 79 KGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD------------STKAILTVN----LLGNPN 142 (390)
T ss_dssp TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT------------TEEEEEEEC----GGGCCC
T ss_pred CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc------------CCeEEEEEC----CccChh
Confidence 89999999999999999999999999988865 78888887753 245555543 346677
Q ss_pred ChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcc--cccccCC-cccEEEeCH-HHHHHHHhh
Q 040324 258 KLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGT--FSKSFGS-YGGYIAGSK-ELIQYLKYN 333 (488)
Q Consensus 258 ~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t--~sK~~g~-~Gg~i~~~~-~~~~~~~~~ 333 (488)
++++|.++|++||++||+||+|+.|... .+ ..+|..+ |+...| .+|.+++ .||++++++ ++.+.++..
T Consensus 143 ~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~----~~~g~~~---~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~ 214 (390)
T 3b8x_A 143 NFDEINKIIGGRDIILLEDNCESMGATF-NN----KCAGTFG---LMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCI 214 (390)
T ss_dssp CHHHHHHHHTTSCCEEEEECTTCTTCEE-TT----EETTSSS---SEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEECcCcccCEE-CC----ccccccc---ceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHH
Confidence 9999999999999999999999965543 22 1234433 444323 2455543 458888875 676655432
Q ss_pred CC-C-----------------------C-----cccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Q 040324 334 CP-A-----------------------H-----LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSK 384 (488)
Q Consensus 334 ~~-~-----------------------~-----~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (488)
.. + + .+...++++.++++++.|+.+ ++..++.+++.+++.+.
T Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l---------~~~~~~~~~~~~~l~~~ 285 (390)
T 3b8x_A 215 RAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL---------PRFISVRRKNAEYFLDK 285 (390)
T ss_dssp TBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 21 1 0 112237788888888877654 57888889999999999
Q ss_pred HHhC-CCeecCCC-CC--CeEEEEeCC--cchHHHHHHHHHHCCceEEeecCCC----c-cCC-----------------
Q 040324 385 LQKM-GFEVLGDN-DS--PVMPIMVYN--PAKVSSFSRECLKQNVAIVTVGFPA----T-PLL----------------- 436 (488)
Q Consensus 385 L~~~-g~~~~~~~-~~--~~~~~~~~~--~~~~~~~~~~l~~~Gi~v~~~~~~~----~-~~~----------------- 436 (488)
|+++ |+.+..+. .+ ..+++.+.. .....++.+.|.++||.+.+. |+. . |..
T Consensus 286 L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (390)
T 3b8x_A 286 FKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPI-VTGNFLKNTDVLKYFDYTVHNNVDNAEYL 364 (390)
T ss_dssp HTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCS-TTSSGGGCHHHHTTCEEEESSCCHHHHHH
T ss_pred hcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeee-cCCchhhcchhhhcCCCCCcCCChHHHHH
Confidence 9887 66665432 22 235666653 235678999999999998852 221 1 110
Q ss_pred -CCeEEEeecCCCCHHHHHHHHHHH
Q 040324 437 -LARARICISASHTKEDLIEALEVI 460 (488)
Q Consensus 437 -~~~iRi~~~~~~t~edid~~l~~l 460 (488)
.+.+||+++..+|++|+|+++++|
T Consensus 365 ~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 365 DKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 136999999999999999999876
No 196
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.93 E-value=6.7e-23 Score=213.15 Aligned_cols=304 Identities=15% Similarity=0.173 Sum_probs=206.8
Q ss_pred HHHHHHHHHHhCCC----CeEEeCCcHHHHhhhhhcccC--------------CCcEEEEeCCCchHHHHHHHhcCC---
Q 040324 149 NELEECVARFVGKP----AAIVFGMGYVTNSSILPVLMG--------------KGSLIISDSLNHNSIVNGARGSGA--- 207 (488)
Q Consensus 149 ~~l~~~la~~~g~~----~~i~~~sGs~a~~~~~~~~~~--------------~~~~Vl~~~~~h~~~~~~~~~~g~--- 207 (488)
.++.+.+++++|.+ ..+++++|+++|..++.++.. +++.|+++...|.++..+++..|.
T Consensus 138 ~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~ 217 (511)
T 3vp6_A 138 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTD 217 (511)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCCC
Confidence 34444556667765 467788889998665554432 577999999999999999999988
Q ss_pred eEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEcccccc
Q 040324 208 TIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIG 282 (488)
Q Consensus 208 ~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g 282 (488)
+++.++.+ |+++|+++|++...+| ....+|++....++.|.+.||++|.++|++||+++++|++|+.+
T Consensus 218 ~~~~v~~d~~~~~d~~~Le~~i~~~~~~g-------~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~ 290 (511)
T 3vp6_A 218 NVILIKCNERGKIIPADFEAKILEAKQKG-------YVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGG 290 (511)
T ss_dssp GEEEECBCTTSCBCHHHHHHHHHHHHHTT-------CEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred cEEEeecCCCCccCHHHHHHHHHHHHhcC-------CCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhh
Confidence 88888866 8999999998754432 23556777788889999999999999999999999999999865
Q ss_pred ccCCCCCCcchhcCCCCCCccEEEcccccccCCc-c-cEEEe-CHHHHHHHHhhCCCCcccCC----------------C
Q 040324 283 AVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSY-G-GYIAG-SKELIQYLKYNCPAHLYATS----------------I 343 (488)
Q Consensus 283 ~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~-G-g~i~~-~~~~~~~~~~~~~~~~~~~~----------------~ 343 (488)
.+... .......|+ ...|+++.+.+|+++.+ | |+++. +++...........+.+... .
T Consensus 291 ~~~~~-~~~~~~~g~--~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~ 367 (511)
T 3vp6_A 291 LLMSR-KHRHKLNGI--ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCG 367 (511)
T ss_dssp GGGCT-TTGGGGTTG--GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSS
T ss_pred HhhCh-hhhhhccCC--ccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCC
Confidence 55211 101111133 24589999999999754 3 55554 55555554322222221100 1
Q ss_pred CHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecC--CCCCCeEEEEeCCcc-----------
Q 040324 344 SPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLG--DNDSPVMPIMVYNPA----------- 409 (488)
Q Consensus 344 ~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~~~----------- 409 (488)
.+..+....++|+.+ +.+..++++++..++++++++.|++. |+++.. ++..+++.+.+....
T Consensus 368 r~~~al~~~~al~~~----g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~ 443 (511)
T 3vp6_A 368 RHVDIFKFWLMWKAK----GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRR 443 (511)
T ss_dssp CCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHH
T ss_pred CchHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHH
Confidence 111223344455544 12256788999999999999999987 888876 345566655543221
Q ss_pred -----hHHHHHHHHHHCCceEEeecCCCccCCCCeEEEee-cCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 410 -----KVSSFSRECLKQNVAIVTVGFPATPLLLARARICI-SASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 410 -----~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~-~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
...++.+.|+++|+.+.. +...+.+.+++|+++ +..+|++||++++++|+++.+.+.
T Consensus 444 ~~l~~~~~~l~~~L~~~G~~~~~--~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 444 EKLHKVAPKIKALMMESGTTMVG--YQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 506 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEE--EEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcCCEEEE--EEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 133688999999977663 112222235799998 788999999999999999887653
No 197
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.93 E-value=9.4e-24 Score=213.23 Aligned_cols=283 Identities=14% Similarity=0.122 Sum_probs=204.5
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHH----HhcCCeEEEeeCCCHHHH
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGA----RGSGATIRVFQHNTPSHL 220 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~----~~~g~~v~~~~~~d~~~L 220 (488)
.+...+|++.+|++++.++++++++|++|+..++. +.++|+.|+++.+.|+++...+ +..|.++..++.+|++++
T Consensus 66 ~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l 144 (403)
T 3cog_A 66 NPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLL 144 (403)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHH
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHH
Confidence 35668999999999999899999999998888888 8899999999999999866543 457999999999899999
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcC-cEEEEEccccccccCCCCCCcchhcCCCC
Q 040324 221 EEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK-AYTYLDEAHSIGAVGKTGRGVCELLGVDT 299 (488)
Q Consensus 221 e~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g-~~li~DE~~s~g~~g~~g~~~~~~~~v~p 299 (488)
++.+++ ++.+|+++++.+++|.+.++++|.++|+++| +++|+||+|+.+.+.. . ++
T Consensus 145 ~~~i~~-------------~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~---~----~~--- 201 (403)
T 3cog_A 145 EAAITP-------------ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQR---P----LA--- 201 (403)
T ss_dssp HHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCC---T----TT---
T ss_pred HHhcCc-------------CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCC---c----cc---
Confidence 887753 3456777999999999999999999999999 9999999998544321 1 11
Q ss_pred CCccEEEcccccccCCcc----cEEEe-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q 040324 300 SDVDIMMGTFSKSFGSYG----GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARI 374 (488)
Q Consensus 300 ~~~di~~~t~sK~~g~~G----g~i~~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~ 374 (488)
.+.|+++.|++|.+|++| |++++ ++++++.++..... ++...+|..+++++.+++.+ ..+.++.
T Consensus 202 ~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~l---------~~r~~~~ 270 (403)
T 3cog_A 202 LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS--LGAVPSPIDCYLCNRGLKTL---------HVRMEKH 270 (403)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTH---------HHHHHHH
T ss_pred cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhhHH---------HHHHHHH
Confidence 245899999999998643 88888 47888887654332 33447888777777776643 4455666
Q ss_pred HHHHHHHHHHHHhC---------------CCeecCC---CCCCeEEEEeCCcchHHHHHHHHHHCCceEEee--c-----
Q 040324 375 RENSNFFRSKLQKM---------------GFEVLGD---NDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTV--G----- 429 (488)
Q Consensus 375 ~~~~~~l~~~L~~~---------------g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~--~----- 429 (488)
.++...+.+.|++. ++.+..+ ..+.++.+.+... ..+..+.|.+.||.+... |
T Consensus 271 ~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~l~~~~i~~~~~s~G~~~sl 348 (403)
T 3cog_A 271 FKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT--LQHAEIFLKNLKLFTLAESLGGFESL 348 (403)
T ss_dssp HHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC--HHHHHHHHHHCSSSEECSCCSSSSCE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC--HHHHHHHHHhCCcceEccCCCCccee
Confidence 66666666666553 2222111 1256676666432 234555566668876542 1
Q ss_pred --CCCc--------------cCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 430 --FPAT--------------PLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 430 --~~~~--------------~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
+|.. ....+.+||++....++++|+.+.++|++++
T Consensus 349 ~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 349 AELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp EECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred eecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 1211 1125799999988888888777777776543
No 198
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.92 E-value=4.1e-24 Score=215.77 Aligned_cols=325 Identities=13% Similarity=0.067 Sum_probs=206.9
Q ss_pred eeEEeccccccCCCCCCccchHHHHHHHHHcCC--CCCCcccCCCChhhHHHHHHHHHHHhCC--------CCeEE--eC
Q 040324 101 RCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSH--STCSSRVDGGTLALHNELEECVARFVGK--------PAAIV--FG 168 (488)
Q Consensus 101 ~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~--~~~~~~~~~g~~~~~~~l~~~la~~~g~--------~~~i~--~~ 168 (488)
..|||+.+.|+.... +|.+.+++.+++.+... ... .+.......++++.+|++++. ++.++ ++
T Consensus 29 ~~i~l~~g~~~d~~~-~~~~~~~v~~a~~~~~~~~~~~----~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~ 103 (401)
T 7aat_A 29 KKMNLGVGAYRDDNG-KPYVLNCVRKAEAMIAAKKMDK----EYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGI 103 (401)
T ss_dssp TCEECCCCSCCCTTS-CCCCCHHHHHHHHHHHHTTCCC----CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred CceeeeeeeEECCCC-CEechHHHHHHHHHhccccccc----CCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecC
Confidence 478998766655443 34554555554443211 111 111222347899999998853 34444 56
Q ss_pred CcHHHHhhhhhcc---cCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCC
Q 040324 169 MGYVTNSSILPVL---MGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRP 238 (488)
Q Consensus 169 sGs~a~~~~~~~~---~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~ 238 (488)
+|++++..++..+ +++||.|+++.|+|..+...++..|.+++.++.+ |++++++.+++ ..
T Consensus 104 G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~--------- 173 (401)
T 7aat_A 104 SGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK-IP--------- 173 (401)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT-SC---------
T ss_pred cchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHh-CC---------
Confidence 6777776555444 4899999999999999999999999999888753 67777777764 11
Q ss_pred CceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccCCCCC----C-cchhcCCCCCCccEEEcccc
Q 040324 239 WKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVGKTGR----G-VCELLGVDTSDVDIMMGTFS 310 (488)
Q Consensus 239 ~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~----~-~~~~~~v~p~~~di~~~t~s 310 (488)
.++.+|++...++++|.+.+ +++|+++|++||+++|+||+|. .++..+. . ...+.+. .+..++++|||
T Consensus 174 ~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~--~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~s 249 (401)
T 7aat_A 174 EKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ--GFASGDINRDAWALRHFIEQ--GIDVVLSQSYA 249 (401)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT--TTTTSCHHHHTHHHHHHHHT--TCCCEEEEECT
T ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccc--cccCCCccccHHHHHHHHhc--CCcEEEEecCC
Confidence 14557777888999997664 8899999999999999999998 5544332 1 1111122 23478889999
Q ss_pred cccCCcc---cEEEe---CHH----HHHHHHhhCCCCcccCCCCHHHHHHHHHHHHH--HhccCCCchHHHHHHHHHHHH
Q 040324 311 KSFGSYG---GYIAG---SKE----LIQYLKYNCPAHLYATSISPPAAEQIISAIQV--VIGEDGSCRGAQKLARIRENS 378 (488)
Q Consensus 311 K~~g~~G---g~i~~---~~~----~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~--i~~~~~~~~~~~~~~~~~~~~ 378 (488)
|.+|.+| ||++. +++ +.+.+...... ...+.+...++++...++. +.. .-.++.++.+++++++.
T Consensus 250 K~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~r 326 (401)
T 7aat_A 250 KNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRP--MYSNPPMNGARIASLILNTPELRK-EWLVEVKGMADRIISMR 326 (401)
T ss_dssp TTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHH--HHSSCCHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHh--ccCCCChHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999888 88765 666 33444332221 1112333333333333321 000 00114567788999999
Q ss_pred HHHHHHHHhCC----CeecCCCCCCeEEEEeCCcchHHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecCCCCHHHH
Q 040324 379 NFFRSKLQKMG----FEVLGDNDSPVMPIMVYNPAKVSSFSRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDL 453 (488)
Q Consensus 379 ~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edi 453 (488)
+++.+.|++.+ +.+..+.++.++++.+ . .++...++ ++||.+.+ .+||+++. +|+++|
T Consensus 327 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~ll~~~gi~v~~-----------~~Ris~~~-~~~~~i 389 (401)
T 7aat_A 327 TQLVSNLKKEGSSHNWQHITDQIGMFCFTGL----K-PEQVERLTKEFSIYMTK-----------DGRISVAG-VASSNV 389 (401)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHCCSSEEECCC----C-HHHHHHHHHHHCEECCT-----------TCEEEGGG-CCTTTH
T ss_pred HHHHHHHHhcCCCCCCceecCCcceEEecCC----C-HHHHHHHHHhCCEeccC-----------CCeEEecc-CChhhH
Confidence 99999999886 4444454555444322 1 23445554 55998862 27999864 566669
Q ss_pred HHHHHHHHHHH
Q 040324 454 IEALEVISRIG 464 (488)
Q Consensus 454 d~~l~~l~~~~ 464 (488)
++++++|++++
T Consensus 390 ~~~~~~l~~~~ 400 (401)
T 7aat_A 390 GYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 199
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=3.5e-24 Score=215.69 Aligned_cols=283 Identities=16% Similarity=0.137 Sum_probs=206.1
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHH----HHhcCCeEEEeeCCCHHHH
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNG----ARGSGATIRVFQHNTPSHL 220 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~----~~~~g~~v~~~~~~d~~~L 220 (488)
.+...++++.+|++++.++++++++|++|+..++. +.++|+.|+++.+.|+++... ++..|.++..++.+| ++|
T Consensus 54 ~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l 131 (393)
T 1n8p_A 54 NPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDL 131 (393)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHH
T ss_pred ChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHH
Confidence 45678999999999999899999999999988888 888999999999999876553 345688888998877 777
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHc----CcEEEEEccccccccCCCCCCcchhcC
Q 040324 221 EEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRY----KAYTYLDEAHSIGAVGKTGRGVCELLG 296 (488)
Q Consensus 221 e~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~----g~~li~DE~~s~g~~g~~g~~~~~~~~ 296 (488)
++.+++ ++.+|+++++.++.|.+.++++|.++|++| |+++|+||+|+.+.+. . ..+ +
T Consensus 132 ~~~i~~-------------~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~---~-~~~-~- 192 (393)
T 1n8p_A 132 PQLIKE-------------NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS---N-PLN-F- 192 (393)
T ss_dssp HHHSCS-------------SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC---C-GGG-G-
T ss_pred HHhccc-------------CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC---C-HHH-c-
Confidence 776642 456777899999999999999999999999 9999999999955442 1 111 1
Q ss_pred CCCCCccEEEcccccccCCcc----cEEEeC-HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHH
Q 040324 297 VDTSDVDIMMGTFSKSFGSYG----GYIAGS-KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKL 371 (488)
Q Consensus 297 v~p~~~di~~~t~sK~~g~~G----g~i~~~-~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~ 371 (488)
++|+++.|++|.+|++| |+++++ +++++.+...... ++...++..++++..+++.+ ....
T Consensus 193 ----~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~~---------~~~~ 257 (393)
T 1n8p_A 193 ----GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA--IGAIPSPFDAWLTHRGLKTL---------HLRV 257 (393)
T ss_dssp ----TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTH---------HHHH
T ss_pred ----CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhccchH---------HHHH
Confidence 35899999999999755 999884 8888877654321 23346777766666666543 4566
Q ss_pred HHHHHHHHHHHHHHHhCCC--e-ecCC----------------C-C-CCeEEEEeCCc-chHHHHHHHHHHCCceEEee-
Q 040324 372 ARIRENSNFFRSKLQKMGF--E-VLGD----------------N-D-SPVMPIMVYNP-AKVSSFSRECLKQNVAIVTV- 428 (488)
Q Consensus 372 ~~~~~~~~~l~~~L~~~g~--~-~~~~----------------~-~-~~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~- 428 (488)
++..++.+.+.+.|++.+. . +..+ . . +.++++.+... .....+.+.|...++.+...
T Consensus 258 ~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~ 337 (393)
T 1n8p_A 258 RQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGG 337 (393)
T ss_dssp HHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCC
Confidence 7777888888888877632 1 1111 1 2 66788887532 34556666554334433211
Q ss_pred -----cCCCc--------------cCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 429 -----GFPAT--------------PLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 429 -----~~~~~--------------~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
..|.. ....+.+||+++...++++++.+.++|+++
T Consensus 338 ~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 338 IESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp SSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 11111 112479999999999999999999998865
No 200
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.92 E-value=1.1e-23 Score=213.86 Aligned_cols=284 Identities=14% Similarity=0.121 Sum_probs=205.7
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHH----HHHhcCCeEEEeeCCCHHH
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVN----GARGSGATIRVFQHNTPSH 219 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~----~~~~~g~~v~~~~~~d~~~ 219 (488)
..+...+|++.+|++.|.+.+++++||++|+..++.+++++||.|+++.+.|+++.. .+...|.+++.++.+|+++
T Consensus 80 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~ 159 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLA 159 (430)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHH
Confidence 356779999999999999999999999999988888889999999999999999887 5667899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT 299 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p 299 (488)
+++.+++ ++.+|+++++.++.|.+.++++|+++|+++|++||+|++|+.+.+. + . . .
T Consensus 160 l~~ai~~-------------~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~---~-~-~-----~ 216 (430)
T 3ri6_A 160 VEHACDE-------------TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLL---E-A-K-----R 216 (430)
T ss_dssp HHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTC---C-G-G-----G
T ss_pred HHHhhCC-------------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC---C-h-H-----H
Confidence 9988754 4557778999999999999999999999999999999999854431 1 1 1 1
Q ss_pred CCccEEEcccccccCCc----ccEEEe--CHHH------------------HHHHHhhCCCCcccCCCCHHHHHHHHHHH
Q 040324 300 SDVDIMMGTFSKSFGSY----GGYIAG--SKEL------------------IQYLKYNCPAHLYATSISPPAAEQIISAI 355 (488)
Q Consensus 300 ~~~di~~~t~sK~~g~~----Gg~i~~--~~~~------------------~~~~~~~~~~~~~~~~~~p~~~aa~~a~L 355 (488)
.+.|+++.|++|.+|+. ||+++. +... ++.++... ...++..++|..++.++..+
T Consensus 217 ~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~-~~~~g~~~~~~~a~l~l~~l 295 (430)
T 3ri6_A 217 LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEV-FQNLGPSLSPHNAYLQSLGL 295 (430)
T ss_dssp GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTH-HHHHCCCCCHHHHHHHHHHH
T ss_pred cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHH-HHhcCCCCCHHHHHHHHhhh
Confidence 23489999999999864 477773 3111 22222111 11234457888877777777
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCe-ecCCC---------------CCC-eEEEEeCCcchHHHHHHH
Q 040324 356 QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFE-VLGDN---------------DSP-VMPIMVYNPAKVSSFSRE 417 (488)
Q Consensus 356 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---------------~~~-~~~~~~~~~~~~~~~~~~ 417 (488)
+.+ ..+.++..+++..+.+.|++. ++. +..+. .+. ++++.+.......+|.+.
T Consensus 296 ~~l---------~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~ 366 (430)
T 3ri6_A 296 ETM---------ALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDA 366 (430)
T ss_dssp HHH---------HHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHH
T ss_pred hhH---------HHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHh
Confidence 765 456778889999999999876 443 32222 134 889988755566677776
Q ss_pred HHHCCceEEeecC------CC--------------ccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 418 CLKQNVAIVTVGF------PA--------------TPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 418 l~~~Gi~v~~~~~------~~--------------~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
|...++.+...+. |. ....++.+||++. .|+.+.+++.|++++
T Consensus 367 l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG----~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 367 LKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG----IEEIEDLKEDILQAL 429 (430)
T ss_dssp CSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC----SSCHHHHHHHHHHHH
T ss_pred CCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHhh
Confidence 6654444332111 10 1124578999984 455666666666654
No 201
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.92 E-value=3.2e-23 Score=209.59 Aligned_cols=285 Identities=13% Similarity=0.151 Sum_probs=208.8
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHH----HhcCCeEEEeeCCCHHH
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGA----RGSGATIRVFQHNTPSH 219 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~----~~~g~~v~~~~~~d~~~ 219 (488)
..+..+++|+++|++.|.++++++++|++|+..++.+++++||.|+++.+.|+++...+ +..|.++..++.+|+++
T Consensus 80 ~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~ 159 (415)
T 2fq6_A 80 GTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGAD 159 (415)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGG
T ss_pred CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHH
Confidence 45677899999999999988999999999998888888899999999999999887654 34689999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHH--cCcEEEEEccccccccCCCCCCcchhcCC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKR--YKAYTYLDEAHSIGAVGKTGRGVCELLGV 297 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~--~g~~li~DE~~s~g~~g~~g~~~~~~~~v 297 (488)
|++++++ ++.+|+++.+.++.|.+.++++|.++|++ ||+++|+|++|+.+... . ..+
T Consensus 160 le~ai~~-------------~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~---~-p~~---- 218 (415)
T 2fq6_A 160 IVKHLQP-------------NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLF---K-ALD---- 218 (415)
T ss_dssp GGGGCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSS---C-GGG----
T ss_pred HHHhhcc-------------CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccC---C-ccc----
Confidence 9887753 34577789999999999999999999999 99999999999844221 1 111
Q ss_pred CCCCccEEEcccccccCCc----ccEEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 040324 298 DTSDVDIMMGTFSKSFGSY----GGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLAR 373 (488)
Q Consensus 298 ~p~~~di~~~t~sK~~g~~----Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~ 373 (488)
.++|+++.|++|.+|+. ||++++++++++.+..... .++..++|..++.++..++.+ ..+.++
T Consensus 219 --~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~--~~G~~~~~~~a~~~~~~l~~l---------~~r~~~ 285 (415)
T 2fq6_A 219 --FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY--LMGQMVDADTAYITSRGLRTL---------GVRLRQ 285 (415)
T ss_dssp --GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHH---------HHHHHH
T ss_pred --cCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHH--hcCCCCCHHHHHHHHhhhhHH---------HHHHHH
Confidence 23589999999999874 4899998888777765432 133446777666666666654 456777
Q ss_pred HHHHHHHHHHHHHhCC-Ce-ecCC----------------CCCCeEEEEeCC---cchHHHHHHHHHHCCceEEeec---
Q 040324 374 IRENSNFFRSKLQKMG-FE-VLGD----------------NDSPVMPIMVYN---PAKVSSFSRECLKQNVAIVTVG--- 429 (488)
Q Consensus 374 ~~~~~~~l~~~L~~~g-~~-~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~l~~~Gi~v~~~~--- 429 (488)
..++...+.+.|++.. +. +.-+ ..+.++++.+.. ......+.+.|...++.++..+
T Consensus 286 ~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s 365 (415)
T 2fq6_A 286 HHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYES 365 (415)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSC
T ss_pred HHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCce
Confidence 7888888888888752 21 1111 235788888865 2345555554432233322100
Q ss_pred ---C--C----------CccCCCCeEEEeecCCCCHHHHHHHHHHHHH
Q 040324 430 ---F--P----------ATPLLLARARICISASHTKEDLIEALEVISR 462 (488)
Q Consensus 430 ---~--~----------~~~~~~~~iRi~~~~~~t~edid~~l~~l~~ 462 (488)
+ | ......+.+||++....++++++.+.++|++
T Consensus 366 ~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 366 LILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp EEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred eEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 1 1 0112247999999999999999999888864
No 202
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.92 E-value=1e-22 Score=210.36 Aligned_cols=304 Identities=17% Similarity=0.121 Sum_probs=205.4
Q ss_pred hhhHHHHHHHH----HHHhCCC------------CeEEeCCcHHHHhhhhhccc-------------------CCCcEEE
Q 040324 145 LALHNELEECV----ARFVGKP------------AAIVFGMGYVTNSSILPVLM-------------------GKGSLII 189 (488)
Q Consensus 145 ~~~~~~l~~~l----a~~~g~~------------~~i~~~sGs~a~~~~~~~~~-------------------~~~~~Vl 189 (488)
.+...++|+.+ ++.+|.+ ..+++++||++|..++.+.. .+++.|+
T Consensus 113 ~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~ 192 (481)
T 4e1o_A 113 SPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAY 192 (481)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEE
T ss_pred CcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEE
Confidence 44445555555 5566765 24788889999966554432 2567999
Q ss_pred EeCCCchHHHHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHH
Q 040324 190 SDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIIT 264 (488)
Q Consensus 190 ~~~~~h~~~~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~ 264 (488)
++...|.++..+++..|.+++.++.+ |+++|++.|++....+ ....+|+.....++.|.+.|+++|.+
T Consensus 193 ~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g-------~~~~~vv~~~~~t~~G~id~l~~I~~ 265 (481)
T 4e1o_A 193 ASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRG-------LVPVFVCATLGTTGVCAFDCLSELGP 265 (481)
T ss_dssp EETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTT-------CEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred EcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCC-------CCcEEEEEecCCCCCcCcCCHHHHHH
Confidence 99999999999999999999999865 8999999998754322 12344555556677899999999999
Q ss_pred HHHHcCcEEEEEcccccccc-CCCCCCcchhcCCCCCCccEEEcccccccCCc-c-cEE-EeCHHHHHHHHhhCCCCccc
Q 040324 265 ICKRYKAYTYLDEAHSIGAV-GKTGRGVCELLGVDTSDVDIMMGTFSKSFGSY-G-GYI-AGSKELIQYLKYNCPAHLYA 340 (488)
Q Consensus 265 l~~~~g~~li~DE~~s~g~~-g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~-G-g~i-~~~~~~~~~~~~~~~~~~~~ 340 (488)
+|++||+++++|++|+.+.+ .+..+.. ..|+ ...|.+..+.+|+++.+ | |++ +.+++...........+...
T Consensus 266 la~~~~~~lhvDaA~g~~~~~~~~~~~~--~~gi--~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~ 341 (481)
T 4e1o_A 266 ICAREGLWLHIDAAYAGTAFLCPEFRGF--LKGI--EYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH 341 (481)
T ss_dssp HHHHHTCEEEEECTTGGGGGGSGGGGGG--GTTG--GGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCC
T ss_pred HHHHcCCeEEeehhhHHHHHhChhhHHH--hcCc--ccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccC
Confidence 99999999999999985433 2111111 1233 23488888999999864 3 444 44555432211111111100
Q ss_pred ---------------CCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCeEEEE
Q 040324 341 ---------------TSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVMPIM 404 (488)
Q Consensus 341 ---------------~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 404 (488)
.+.. ..+....++|+.+. .+..++++++..++++++++.|++. |+++..++..+++++.
T Consensus 342 ~~~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~ 416 (481)
T 4e1o_A 342 ANSGVATDFMHWQIPLSRR-FRSVKLWFVIRSFG----VKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFR 416 (481)
T ss_dssp TTTTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEE
T ss_pred cccCCCCCcccccccCCCC-ccHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE
Confidence 0111 11223334444431 1256778899999999999999997 8888777677888777
Q ss_pred eCC-cchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCC-CCHHHHHHHHHHHHHHHHHh
Q 040324 405 VYN-PAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISAS-HTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 405 ~~~-~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~-~t~edid~~l~~l~~~~~~~ 467 (488)
+.. .....++.++|.++|+.+.. |....+..++|+++... .|++||++++++|+++.+++
T Consensus 417 ~~~~~~~~~~l~~~L~~~g~~~~~---~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 417 LKGPNSLTENVLKEIAKAGRLFLI---PATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLI 478 (481)
T ss_dssp ESSCHHHHHHHHHHHHHHCSSBCE---EEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCchHHHHHHHHHHHhCCeEEEE---eeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 743 34466899999999854432 22233457899997644 48999999999999998765
No 203
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.92 E-value=1e-23 Score=212.26 Aligned_cols=245 Identities=16% Similarity=0.152 Sum_probs=189.6
Q ss_pred hhHHHHHHHHHHHhCCCCeEE---eCCcHHHHhhhhhcccCCCcEEEEeC-CCchHHHHH----------HHhcCCeEEE
Q 040324 146 ALHNELEECVARFVGKPAAIV---FGMGYVTNSSILPVLMGKGSLIISDS-LNHNSIVNG----------ARGSGATIRV 211 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~~~i~---~~sGs~a~~~~~~~~~~~~~~Vl~~~-~~h~~~~~~----------~~~~g~~v~~ 211 (488)
....+|++.+|+++|.+.+++ ++||++|+..++.+++++||.|+++. +.|+.+... ++..|.++..
T Consensus 59 ~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~ 138 (409)
T 3jzl_A 59 EGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSS 138 (409)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEE
T ss_pred hHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEE
Confidence 346889999999999998888 88999999888889999999999998 888887643 3456888888
Q ss_pred eeC-----CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcC----cCCCCCCCCChHHHHHHHHH--cCcEEEEEcccc
Q 040324 212 FQH-----NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEG----IYSMEGELCKLPEIITICKR--YKAYTYLDEAHS 280 (488)
Q Consensus 212 ~~~-----~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~----v~s~~G~~~~l~~l~~l~~~--~g~~li~DE~~s 280 (488)
++. .|++++++.+++ ++.+|++++ +.++.|.+.++++|+++|++ ||+++|+||+|+
T Consensus 139 v~~~~~g~~d~e~l~~ai~~-------------~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~ 205 (409)
T 3jzl_A 139 VPLLENGDVDFPRIAKKMTP-------------KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYG 205 (409)
T ss_dssp CCCCTTSCCCHHHHHHHCCT-------------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred eCCCCCCCcCHHHHHHhccC-------------CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcc
Confidence 887 488998887753 345677777 99999999999999999999 999999999998
Q ss_pred ccccCCCCCCcchhcCCCCCCccEEEcccccccCCc----ccEEEeCHHHHHHHHhhC--CCCcccCCCCHHHHHHHHHH
Q 040324 281 IGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSY----GGYIAGSKELIQYLKYNC--PAHLYATSISPPAAEQIISA 354 (488)
Q Consensus 281 ~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~----Gg~i~~~~~~~~~~~~~~--~~~~~~~~~~p~~~aa~~a~ 354 (488)
.+.++.. .. ..++|++++|++|.+|+. ||++++++++++.++... .+.....+..+..+.+++..
T Consensus 206 ~~~~~~~---p~------~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~g 276 (409)
T 3jzl_A 206 EFVEYQE---PP------EVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQG 276 (409)
T ss_dssp TTTSSCC---SG------GGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHH
T ss_pred cccccCC---cc------ccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHHHHH
Confidence 5443211 11 123589999999999753 599999999999987632 22222222222223445555
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCC-----eEEEEeCCcchHHHHHHHHHHCC
Q 040324 355 IQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP-----VMPIMVYNPAKVSSFSRECLKQN 422 (488)
Q Consensus 355 L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~G 422 (488)
++.+ ..++++..+++.++.+.|+++|+++... .++ ++++.+.+.....+|++.|.+..
T Consensus 277 l~~~---------~~r~~~~~~~a~~la~~L~~~g~~v~p~-~~~~~~~~i~~i~l~~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 277 FFLA---------PHVTAQAIKGARFTAAMLAEFGVEADPV-WDAPRTDLIQSVSFHNKEKMVAFAQAIQAAS 339 (409)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHHHHHHTTCEEESC-TTSCCSSSCCEEECSCHHHHHHHHHHHHHTS
T ss_pred HhhH---------HHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCCccEEEEEEeCCHHHHHHHHHHHHhcC
Confidence 5543 5678889999999999999999988433 444 88999988888889999999873
No 204
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.91 E-value=1.3e-23 Score=214.16 Aligned_cols=335 Identities=13% Similarity=0.130 Sum_probs=217.7
Q ss_pred cceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccC--CCChhhHHHHHHHHHHHhCCC--CeEEeCCcHHHH
Q 040324 99 VSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVD--GGTLALHNELEECVARFVGKP--AAIVFGMGYVTN 174 (488)
Q Consensus 99 g~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~--~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~ 174 (488)
+..|||++++. +.+|.+.+++.+++.+.. .+..+... .+..+...++++.+++++|.+ .++++++|++++
T Consensus 18 ~~~~Ld~~~~~-----~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~ 91 (432)
T 3a9z_A 18 RKVYMDYNATT-----PLEPEVIQAVTEAMKEAW-GNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESN 91 (432)
T ss_dssp CCEECBTTTCC-----CCCHHHHHHHHHHHHHCC-SCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CcEEeeCCccC-----CCCHHHHHHHHHHHHHhc-CCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHH
Confidence 56777765432 457899999999987631 12111110 012345689999999999974 455555668888
Q ss_pred hhhhhccc--------CCCc-------------EEEEeCCCchHHHHHH----HhcCCeEEEeeCC------CHHHHHHH
Q 040324 175 SSILPVLM--------GKGS-------------LIISDSLNHNSIVNGA----RGSGATIRVFQHN------TPSHLEEV 223 (488)
Q Consensus 175 ~~~~~~~~--------~~~~-------------~Vl~~~~~h~~~~~~~----~~~g~~v~~~~~~------d~~~Le~~ 223 (488)
..++.++. ++|+ .|+++...|+++..++ +..|.+++.++.+ |+++|++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~ 171 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAA 171 (432)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHT
T ss_pred HHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHh
Confidence 77776664 3664 5566666677765543 3358888888753 67777776
Q ss_pred HHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcC----------cEEEEEccccccccCCCCCCcch
Q 040324 224 LREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK----------AYTYLDEAHSIGAVGKTGRGVCE 293 (488)
Q Consensus 224 l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g----------~~li~DE~~s~g~~g~~g~~~~~ 293 (488)
+++ ++.+|+++++.+++|.+.++++|.++|+++| +++|+||+|+.|.. . .+
T Consensus 172 i~~-------------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~---~---~~ 232 (432)
T 3a9z_A 172 VRP-------------TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR---R---VD 232 (432)
T ss_dssp CCT-------------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS---C---CC
T ss_pred ccC-------------CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc---c---cC
Confidence 642 3457778899999999999999999999999 99999999974321 1 11
Q ss_pred hcCCCCCCccEEEcccccccCCcccEEEeCHHH-HHHHHhhCCC-----CcccCCCCHHHHHHHHHHHHHHhccCCCchH
Q 040324 294 LLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKEL-IQYLKYNCPA-----HLYATSISPPAAEQIISAIQVVIGEDGSCRG 367 (488)
Q Consensus 294 ~~~v~p~~~di~~~t~sK~~g~~Gg~i~~~~~~-~~~~~~~~~~-----~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~ 367 (488)
.... +.|+++.|++|.+|...|+++++++. ...+.....+ .....+.++..++++.++++.+.. ..
T Consensus 233 ~~~~---~~d~~~~s~~K~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~-----~~ 304 (432)
T 3a9z_A 233 VEDL---GVDFLTIVGHKFYGPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSE-----NC 304 (432)
T ss_dssp HHHH---CCSEEEEEGGGTTCCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHH-----HH
T ss_pred hhhc---CCCEEEEehhHhcCCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHh-----hH
Confidence 1111 23788899999987556999988765 2222111000 001123677777788888887631 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCeec--CC----C-CCCeEEEEeCC-cchHHHHHHHHHHCCceEEee-cC-C-----
Q 040324 368 AQKLARIRENSNFFRSKLQKM-GFEVL--GD----N-DSPVMPIMVYN-PAKVSSFSRECLKQNVAIVTV-GF-P----- 431 (488)
Q Consensus 368 ~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~----~-~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~-~~-~----- 431 (488)
++..++++++.+++.+.|+++ |+.+. .+ . ...++++.+.. .....++.+.+ +|+.+... .+ +
T Consensus 305 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~ 382 (432)
T 3a9z_A 305 ETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDR 382 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh--cCeEEeccccccCCCCCC
Confidence 778889999999999999884 65432 32 1 12355665643 22344555544 24444320 00 0
Q ss_pred --------Ccc--CCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 432 --------ATP--LLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 432 --------~~~--~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
..+ ...+++||+++..+|++|+++++++|+++++++.
T Consensus 383 ~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 383 PSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 000 0137899999888899999999999999987653
No 205
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.91 E-value=5.8e-23 Score=206.92 Aligned_cols=282 Identities=16% Similarity=0.188 Sum_probs=200.7
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHHH-----hcCCeEEEeeCCCHH
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGAR-----GSGATIRVFQHNTPS 218 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~-----~~g~~v~~~~~~d~~ 218 (488)
..+...+|++++|++.|.+++++++||++|+.. +..+.++++.|++..+.|+++...+. ..|.++..++.+|++
T Consensus 65 ~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 143 (400)
T 3nmy_A 65 HNPTRFAYERCVAALEGGTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPA 143 (400)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHH
Confidence 456778999999999999999999999988876 56678899999999999997665543 359999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCC
Q 040324 219 HLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD 298 (488)
Q Consensus 219 ~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~ 298 (488)
++++.+++ ++.+|+++++.+++|.+.++++|+++|++||++||+||+|+.+.+.. . ..
T Consensus 144 ~l~~~i~~-------------~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~----~---~~-- 201 (400)
T 3nmy_A 144 AFKAAIRA-------------DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQR----P---LS-- 201 (400)
T ss_dssp HHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC----G---GG--
T ss_pred HHHHHhcc-------------CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCC----h---hh--
Confidence 99988754 45678889999999999999999999999999999999997433321 0 11
Q ss_pred CCCccEEEcccccccCCc----cc--EEEeCHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 040324 299 TSDVDIMMGTFSKSFGSY----GG--YIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLA 372 (488)
Q Consensus 299 p~~~di~~~t~sK~~g~~----Gg--~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~ 372 (488)
.++|+++.|++|.+|++ || ++..++++.+.+...... ++..++|..++.++..++.+ ..+.+
T Consensus 202 -~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~--~g~~~~~~~a~~~l~~l~~l---------~~r~~ 269 (400)
T 3nmy_A 202 -LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS--IGGVQGPFDSFLALRGLKTL---------PLRMR 269 (400)
T ss_dssp -GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHH--HCCBCCHHHHHHHHHHHTTH---------HHHHH
T ss_pred -cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHhHhHH---------HHHHH
Confidence 23489999999999865 36 344578888887765443 33448888887777777654 56777
Q ss_pred HHHHHHHHHHHHHHhCC-Ce-ecC----------------CCCCCeEEEEeCCc-chHHHHHHHHHHCCceEEeec----
Q 040324 373 RIRENSNFFRSKLQKMG-FE-VLG----------------DNDSPVMPIMVYNP-AKVSSFSRECLKQNVAIVTVG---- 429 (488)
Q Consensus 373 ~~~~~~~~l~~~L~~~g-~~-~~~----------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~---- 429 (488)
+..++...+.+.|++.. +. +.- ...+.++++.+... .....|.+.|.--++.+...+
T Consensus 270 ~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl 349 (400)
T 3nmy_A 270 AHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESL 349 (400)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCE
T ss_pred HHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcce
Confidence 88889999999998753 22 211 12357888888543 334456555543332222111
Q ss_pred --CCCc--------------cCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 430 --FPAT--------------PLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 430 --~~~~--------------~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
.|.. ...++.+|+++....+++. ++.|++++
T Consensus 350 ~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dl----i~dl~~al 396 (400)
T 3nmy_A 350 VNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDL----RGDLERAL 396 (400)
T ss_dssp EECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHH----HHHHHHHH
T ss_pred eeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHH----HHHHHHHH
Confidence 1111 1235789999966554444 44455444
No 206
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.91 E-value=1.6e-23 Score=209.47 Aligned_cols=319 Identities=14% Similarity=0.148 Sum_probs=206.8
Q ss_pred cc-eeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCC---CCeEEeCCcHHHH
Q 040324 99 VS-RCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGK---PAAIVFGMGYVTN 174 (488)
Q Consensus 99 g~-~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~---~~~i~~~sGs~a~ 174 (488)
|+ .++|++. +-+ +..+.+++.+++..+ . ++.....++++.+++++|. ++++++++|++++
T Consensus 26 g~~~v~~~~~----~~~--~~~~~~~v~~a~~~~----~------~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~ 89 (374)
T 2aeu_A 26 GRDALYDLSG----LSG--GFLIDEKDKALLNTY----I------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAI 89 (374)
T ss_dssp CGGGCEECSS----CCC--CCCCCHHHHHHHTST----T------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHH
T ss_pred Cccceeeecc----cCC--CCCCCHHHHHHHHHh----c------CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHH
Confidence 44 5667652 212 344556666666522 1 1233446788888888898 6788889999999
Q ss_pred hhhhhcccCCCcEEEEeCCCchH---HHHHHHhcCCeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCC
Q 040324 175 SSILPVLMGKGSLIISDSLNHNS---IVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYS 251 (488)
Q Consensus 175 ~~~~~~~~~~~~~Vl~~~~~h~~---~~~~~~~~g~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s 251 (488)
..++.++ +||.|+++.+.|+. ....++..|++++.+ .|++++++. .+ ..+++|+++++++
T Consensus 90 ~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--~d~~~l~~~-~~------------~~~~~v~~~~p~n 152 (374)
T 2aeu_A 90 LATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES--DKVGEILNK-ID------------KDTLVIITGSTMD 152 (374)
T ss_dssp HHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--SCHHHHHTT-CC------------TTEEEEEECBCTT
T ss_pred HHHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe--CCHHHHHhc-CC------------CccEEEEEccCCC
Confidence 8888777 89999999995544 333677789998888 688887765 21 2343277788889
Q ss_pred CCC-CCCChHHHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCccEEEcccccccCCc-ccEEEeCHHHHH
Q 040324 252 MEG-ELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSY-GGYIAGSKELIQ 328 (488)
Q Consensus 252 ~~G-~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~di~~~t~sK~~g~~-Gg~i~~~~~~~~ 328 (488)
++| ...++++|.++|++||++||+||+|+.+..++.... ... + +.|+++.|++|++++. +||+++++++++
T Consensus 153 ptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~-----~~di~~~S~sK~l~g~~~G~~~~~~~~~~ 226 (374)
T 2aeu_A 153 LKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK-L-----GADLVVTSTDKLMEGPRGGLLAGKKELVD 226 (374)
T ss_dssp SCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH-H-----TCSEEEEETTSSSSSCSCEEEEEEHHHHH
T ss_pred CCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccc-c-----CCcEEEecCcccccCcceEEEEECHHHHH
Confidence 999 788999999999999999999999974421111111 111 1 2379999999998754 499999999999
Q ss_pred HHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH--------HHHHHHHHhC----CCeecCCC
Q 040324 329 YLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENS--------NFFRSKLQKM----GFEVLGDN 396 (488)
Q Consensus 329 ~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~--------~~l~~~L~~~----g~~~~~~~ 396 (488)
.++..... ++.+.+++.++++.++|+.+ . .+..+++.++. +.+.+.|..+ |+.+...+
T Consensus 227 ~l~~~~~~--~~~~~~~~~~~a~~~al~~~-------~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~ 296 (374)
T 2aeu_A 227 KIYIEGTK--FGLEAQPPLLAGIYRALKNF-------N-LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTP 296 (374)
T ss_dssp HHHHHHHT--TTCBCCHHHHHHHHHHHHHC-------C-HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECS
T ss_pred HHHHhhcc--ccCCCCHHHHHHHHHHHHHH-------h-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCC
Confidence 88764432 33347888888888888874 1 11233333333 4445555443 44443333
Q ss_pred CCCeEEEEeCCcc-h---HHHHHHHHH-HCCceEEeecCCCccCCCCeEEEeecC-CCCHHHHHHHHHHHHHHHHHhC
Q 040324 397 DSPVMPIMVYNPA-K---VSSFSRECL-KQNVAIVTVGFPATPLLLARARICISA-SHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 397 ~~~~~~~~~~~~~-~---~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~~iRi~~~~-~~t~edid~~l~~l~~~~~~~~ 468 (488)
.+.+++..-.... . ..+++..++ ++||.+.+.. . .+.+.+++||+++. ..+++++++++++++++++++.
T Consensus 297 ~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~-~-~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 297 TGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVA-G-MPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTS-S-SCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeecccccccccchHHHHHHHHHhCCEEEecCC-C-CCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 3333332211111 1 123665565 4699998621 1 13345689999853 2334459999999999988875
No 207
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.91 E-value=3.8e-23 Score=211.94 Aligned_cols=284 Identities=15% Similarity=0.153 Sum_probs=200.5
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHH----HHhcCCeEEEeeCCCHHHH
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNG----ARGSGATIRVFQHNTPSHL 220 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~----~~~~g~~v~~~~~~d~~~L 220 (488)
.+...++++.+++++|.++++++++|++++..++. +.++||.|+++.+.|+++... ++..|.+++.++.+|+++|
T Consensus 132 ~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l 210 (464)
T 1ibj_A 132 NPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEV 210 (464)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHH
Confidence 34678999999999999889999999998866665 678999999999999998754 4567999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCC
Q 040324 221 EEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTS 300 (488)
Q Consensus 221 e~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~ 300 (488)
++.+.+ ++.+|+++++.+++|.+.++++|+++|++||+++|+||+|+.|... . ..+ .
T Consensus 211 ~~~i~~-------------~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~---~-~~~------~ 267 (464)
T 1ibj_A 211 AAAIGP-------------QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS---R-PLE------L 267 (464)
T ss_dssp HHHCCS-------------SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC---C-GGG------T
T ss_pred HHHhcc-------------CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC---C-hhh------c
Confidence 887753 4567778999999999999999999999999999999999843221 1 111 2
Q ss_pred CccEEEcccccccCCc-c---cEEEeC-HHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 040324 301 DVDIMMGTFSKSFGSY-G---GYIAGS-KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIR 375 (488)
Q Consensus 301 ~~di~~~t~sK~~g~~-G---g~i~~~-~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~ 375 (488)
++|+++.|++|+++++ | |+++++ +++++.+..... .++.+.++..+.+++++|+.+ ....++..
T Consensus 268 ~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~--~~g~~~~~~~~~a~~~al~~~---------~~r~~~~~ 336 (464)
T 1ibj_A 268 GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN--SEGSGLAPFDCWLCLRGIKTM---------ALRIEKQQ 336 (464)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHH--HTTCBCCHHHHHHHHHHHTTH---------HHHHHHHH
T ss_pred CCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHH--hcCCCCCHHHHHHHHhchhhH---------HHHHHHHH
Confidence 3589999999999753 3 888888 578887765432 122336788777777776543 22233333
Q ss_pred HHHHHHHHHHHhC---------------CCeecCCC---CCCeEEEEeCCcchHHHHHHHHHHCCceEEeec------CC
Q 040324 376 ENSNFFRSKLQKM---------------GFEVLGDN---DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVG------FP 431 (488)
Q Consensus 376 ~~~~~l~~~L~~~---------------g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~ 431 (488)
++...+.+.|++. ++.+..+. .+.++++.+........+.+.|...||.+...+ .|
T Consensus 337 ~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p 416 (464)
T 1ibj_A 337 ENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMP 416 (464)
T ss_dssp HHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECT
T ss_pred HHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecc
Confidence 3333344444332 23333322 246777776432223457777776787776422 01
Q ss_pred C------c--------cCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 432 A------T--------PLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 432 ~------~--------~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
. . ...++.+||+++. ||++++++.|+++++++
T Consensus 417 ~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 417 CFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp TTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred cccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhhc
Confidence 0 0 1225789999965 89999999999998653
No 208
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.91 E-value=1.7e-23 Score=208.32 Aligned_cols=312 Identities=12% Similarity=0.104 Sum_probs=209.9
Q ss_pred CCCCccchHHHHHHHHHcCCCCCCc-----ccCCCChhhHHHHHHHHHHHhCCC---CeEEe-CCcHHHHhhhhhcccCC
Q 040324 114 AAADEYCTPRVIDSLKKYSHSTCSS-----RVDGGTLALHNELEECVARFVGKP---AAIVF-GMGYVTNSSILPVLMGK 184 (488)
Q Consensus 114 ~~~~~~v~~a~~~~l~~~~~~~~~~-----~~~~g~~~~~~~l~~~la~~~g~~---~~i~~-~sGs~a~~~~~~~~~~~ 184 (488)
...++.+.+++.+.+.++. +.+++ .......+..+++++.+++++|.+ +++++ ++|++++..++.++.++
T Consensus 13 ~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~ 91 (362)
T 2c0r_A 13 AALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKE 91 (362)
T ss_dssp CCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCT
T ss_pred CCCCHHHHHHHHHHHhhhh-hcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCC
Confidence 3446788888888776542 11111 011112345689999999999986 34556 56677788888888899
Q ss_pred CcEEEEeCCCchHH--HHHHHhcCCeEEEeeCC---------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCC
Q 040324 185 GSLIISDSLNHNSI--VNGARGSGATIRVFQHN---------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSME 253 (488)
Q Consensus 185 ~~~Vl~~~~~h~~~--~~~~~~~g~~v~~~~~~---------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~ 253 (488)
||.|++..+.|.+. ...++..| +++.++.+ |.++++ +. +.++ +|++..+.+++
T Consensus 92 gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~------------~~t~-~v~~~~~~n~t 155 (362)
T 2c0r_A 92 GQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ------------DNAA-YLHLTSNETIE 155 (362)
T ss_dssp TCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC------------TTEE-EEEEESEETTT
T ss_pred CCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC------------CCcC-EEEEeCCcCcc
Confidence 99988765554442 34556667 87777642 222221 11 1234 45555557788
Q ss_pred CC-CCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cEEEeCHHHHHHHH
Q 040324 254 GE-LCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYIAGSKELIQYLK 331 (488)
Q Consensus 254 G~-~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i~~~~~~~~~~~ 331 (488)
|. +.++++| +|+++|+||+|+.|... .++ .+.|+++.|++|++|..| ||+++++++++.+.
T Consensus 156 G~~~~~l~~i------~~~~vivD~a~~~~~~~---------~~~--~~~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~ 218 (362)
T 2c0r_A 156 GAQFKAFPDT------GSVPLIGDMSSDILSRP---------FDL--NQFGLVYAGAQKNLGPSGVTVVIVREDLVAESP 218 (362)
T ss_dssp TEECSSCCCC------TTSCEEEECTTTTTSSC---------CCG--GGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCC
T ss_pred ceeccccccc------CCCEEEEEChhhccCCc---------cch--hHCcEEEEeccccccCcCcEEEEEcHHHHhhcc
Confidence 88 4677776 89999999999854321 122 223889999999999878 99999988765553
Q ss_pred hhCC----------CCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC-C-eecCC---C
Q 040324 332 YNCP----------AHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG-F-EVLGD---N 396 (488)
Q Consensus 332 ~~~~----------~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~---~ 396 (488)
.... ......+.++..++++.++|+.+... ...++..++++++++++.+.|+++| + ++..+ .
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 295 (362)
T 2c0r_A 219 KHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEER---GGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSR 295 (362)
T ss_dssp TTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGB
T ss_pred ccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHc
Confidence 2110 00112346777778888888876321 0247788999999999999999997 6 76432 1
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 397 DSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
...++++.+.......++++.|.++||.+.+ +++. .+.+||++...+|+||+++++++|++++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~-g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 296 SDMNITFRLASEELEKEFVKASEQEGFVGLK-GHRS----VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp CSSEEEEECSCHHHHHHHHHHHHHTTEESCB-CCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCcchHHHHHHHHHHCCCeecc-CCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3456666665444567899999999997653 3222 2569999988889999999999999987654
No 209
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.91 E-value=1e-22 Score=209.05 Aligned_cols=325 Identities=13% Similarity=0.003 Sum_probs=218.5
Q ss_pred CccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHhCCCC-------eEEeCCcHHHHhhhhhcccC------
Q 040324 117 DEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPA-------AIVFGMGYVTNSSILPVLMG------ 183 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGs~a~~~~~~~~~~------ 183 (488)
+|.+.+++.+++.+....+..+ .+......++++.+++++|.+. .+++++|++++..++.++..
T Consensus 55 ~~~v~e~~~~a~~~~~~~~~~~---~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~ 131 (452)
T 2dgk_A 55 DENVHKLMDLSINKNWIDKEEY---PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131 (452)
T ss_dssp CHHHHHHHHHTTTCBTTCTTTC---HHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCChhhC---hhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777765543332211 1344556777888899998752 67888888888766655532
Q ss_pred --CC-----cEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcC
Q 040324 184 --KG-----SLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY 250 (488)
Q Consensus 184 --~~-----~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~ 250 (488)
+| +.|+++. .|.++...++..|.+++.++.+ |+++|++.|++ ++.+|++....
T Consensus 132 ~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-------------~t~~v~~~~~~ 197 (452)
T 2dgk_A 132 EAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE-------------NTIGVVPTFGV 197 (452)
T ss_dssp HHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT-------------TEEEEECBBSC
T ss_pred HhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhh-------------CCEEEEEEcCC
Confidence 33 5888888 9999999999999999998853 78888887754 34455556666
Q ss_pred CCCCCCCChHHHHHHHHHc------CcEEEEEcccccccc---CCCCCCcchhcCCCCCCccEEEcccccccCC-cc-cE
Q 040324 251 SMEGELCKLPEIITICKRY------KAYTYLDEAHSIGAV---GKTGRGVCELLGVDTSDVDIMMGTFSKSFGS-YG-GY 319 (488)
Q Consensus 251 s~~G~~~~l~~l~~l~~~~------g~~li~DE~~s~g~~---g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~-~G-g~ 319 (488)
++.|.+.|+++|.++|++| |+++++|++|+.+.. ..... +.+...++|+++.+++|.+.+ .+ |+
T Consensus 198 n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~hK~~~~~~~~G~ 272 (452)
T 2dgk_A 198 TYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV-----WDFRLPRVKSISASGHKFGLAPLGCGW 272 (452)
T ss_dssp TTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-----CSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred cCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch-----hhcCCCCCcEEEECcccccCCCCCeEE
Confidence 6789999999999999996 999999999984432 22111 112224578888899996633 33 88
Q ss_pred EEeCH-HHH-HHHHhhCCCCc------c--cCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC
Q 040324 320 IAGSK-ELI-QYLKYNCPAHL------Y--ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG 389 (488)
Q Consensus 320 i~~~~-~~~-~~~~~~~~~~~------~--~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 389 (488)
++.++ +.. +.+... ..+. + ..+.+.....+..++++.+. .+..++..++..++++++.+.|++.+
T Consensus 273 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg----~~g~~~~~~~~~~~a~~l~~~L~~~~ 347 (452)
T 2dgk_A 273 VIWRDEEALPQELVFN-VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG----REGYTKVQNASYQVAAYLADEIAKLG 347 (452)
T ss_dssp EEESSGGGSCGGGCEE-ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCHHHHHHHhccC-ccccCCCCCCcccCCCChhHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88754 332 333211 1111 0 11122212333344455441 12456788889999999999999984
Q ss_pred -CeecCC----CCCCeEEEEeCCc----chHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHH
Q 040324 390 -FEVLGD----NDSPVMPIMVYNP----AKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVI 460 (488)
Q Consensus 390 -~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l 460 (488)
+++..+ ...+++.+.+... ....++.+.|.++|+.+.....|....+.+.+|+++...+|++|+|++++.|
T Consensus 348 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l 427 (452)
T 2dgk_A 348 PYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDY 427 (452)
T ss_dssp SEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHH
Confidence 777643 3446666666532 1346899999999997654332333234568999999889999999999999
Q ss_pred HHHHHHhC
Q 040324 461 SRIGDLVG 468 (488)
Q Consensus 461 ~~~~~~~~ 468 (488)
+++++.++
T Consensus 428 ~~~~~~~~ 435 (452)
T 2dgk_A 428 KASLKYLS 435 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 210
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.91 E-value=8.8e-22 Score=204.78 Aligned_cols=300 Identities=16% Similarity=0.185 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHhCCC----CeEEeCCcHHHHhhhhhcccC--------CC-----c-EEEEeCCCchHHHHHHHhcCC--
Q 040324 148 HNELEECVARFVGKP----AAIVFGMGYVTNSSILPVLMG--------KG-----S-LIISDSLNHNSIVNGARGSGA-- 207 (488)
Q Consensus 148 ~~~l~~~la~~~g~~----~~i~~~sGs~a~~~~~~~~~~--------~~-----~-~Vl~~~~~h~~~~~~~~~~g~-- 207 (488)
..++.+.+++++|.+ ..+++++|+++|..++.++.. +| + .|+++.+.|.++..+++..|.
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~ 213 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT 213 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCc
Confidence 345556678888865 467778889998766655531 34 5 788999999999999888776
Q ss_pred -eEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccc
Q 040324 208 -TIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSI 281 (488)
Q Consensus 208 -~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~ 281 (488)
+++.++.+ |+++|++.|++...+| .++.+|++....+..|.+.|+++|.++|++||+++++|++|+.
T Consensus 214 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g-------~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~ 286 (504)
T 2okj_A 214 DNVILIKCNERGKIIPADFEAKILEAKQKG-------YVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGG 286 (504)
T ss_dssp GGEEEECBCTTSCBCHHHHHHHHHHHHHTT-------CEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGG
T ss_pred ccEEEEecCCCCCCCHHHHHHHHHHHHHCC-------CCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhh
Confidence 78888875 8999999998754332 1345666777778889999999999999999999999999985
Q ss_pred cccCCCCCCcchhcCCCCCCccEEEcccccccCCc-c-cEEEeCH-HHHHHHHhhCCCCcccC-----------------
Q 040324 282 GAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSY-G-GYIAGSK-ELIQYLKYNCPAHLYAT----------------- 341 (488)
Q Consensus 282 g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~-G-g~i~~~~-~~~~~~~~~~~~~~~~~----------------- 341 (488)
+.+.... ......++ ..+|+++.+++|.++.+ | |+++.++ ++++........+.++.
T Consensus 287 ~~~~~~~-~~~~~~g~--~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 363 (504)
T 2okj_A 287 GLLMSRK-HRHKLNGI--ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQC 363 (504)
T ss_dssp GGGGCTT-TGGGGTTG--GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCS
T ss_pred HHHhCHh-hHhhcCCc--ccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCC
Confidence 5542111 01111223 24589989999999853 3 8887765 46554322222222110
Q ss_pred --CCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecC--CCCCCeEEEEeCCcc-------
Q 040324 342 --SISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLG--DNDSPVMPIMVYNPA------- 409 (488)
Q Consensus 342 --~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~~~------- 409 (488)
....+.+.++++++.. +..+++.++..++++++.+.|++. |+++.. ++...++.+......
T Consensus 364 ~rr~~~l~~~a~l~~lg~-------~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~ 436 (504)
T 2okj_A 364 GRHVDIFKFWLMWKAKGT-------VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDS 436 (504)
T ss_dssp SCBCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCC
T ss_pred CCCccHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccc
Confidence 1134444444444432 145678889999999999999987 888875 233444444432211
Q ss_pred ---------hHHHHHHHHHHCCceEEe-ecCCCccCCCCeEEEeec-CCCCHHHHHHHHHHHHHHHHHh
Q 040324 410 ---------KVSSFSRECLKQNVAIVT-VGFPATPLLLARARICIS-ASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 410 ---------~~~~~~~~l~~~Gi~v~~-~~~~~~~~~~~~iRi~~~-~~~t~edid~~l~~l~~~~~~~ 467 (488)
...++.+.|.++|+.+.. ..+. ...+++|+++. ..+|++||++++++|+++++++
T Consensus 437 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~---~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 437 PQRREKLHKVAPKIKALMMESGTTMVGYQPQG---DKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTSCEEEEEEET---TEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred hhhHHHHHHHHHHHHHHHHhCCcEEEEeeEEC---CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 135788899999965542 1111 11258999995 7899999999999999987654
No 211
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.91 E-value=4.9e-22 Score=198.84 Aligned_cols=310 Identities=18% Similarity=0.133 Sum_probs=217.6
Q ss_pred CccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHH-HHHhC-CCCeEEeCCcHHHHhhhhhcc-cCCCcEEEEeCC
Q 040324 117 DEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECV-ARFVG-KPAAIVFGMGYVTNSSILPVL-MGKGSLIISDSL 193 (488)
Q Consensus 117 ~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~l-a~~~g-~~~~i~~~sGs~a~~~~~~~~-~~~~~~Vl~~~~ 193 (488)
++.+.+++.+.++.. ..+ ...+...+|++++ |+++| .+.++++++|++|+..++.++ .++||.|+++.+
T Consensus 15 ~~~i~~a~~~~~~~~-~~~-------~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~ 86 (377)
T 3ju7_A 15 VIEYLDELKEIDASH-IYT-------NYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSF 86 (377)
T ss_dssp GGGGHHHHHHHHHHT-CCS-------SSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESS
T ss_pred cHHHHHHHHHHHHcC-Ccc-------cCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCC
Confidence 467889999988773 111 1245668999999 99999 788999999999998888777 899999999999
Q ss_pred CchHHHHHHHhcCCeEEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCC-ceEEEEEcCcCCCCCCCCChHHHHHHH
Q 040324 194 NHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTRRPW-KKIMVVVEGIYSMEGELCKLPEIITIC 266 (488)
Q Consensus 194 ~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~-~~~~vi~e~v~s~~G~~~~l~~l~~l~ 266 (488)
.|.++...+...|++++.++.+ |++++++++... . ++.+|+. .++.|.+.++++|.++|
T Consensus 87 ~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~-----------~~~tk~v~~---~~~~G~~~~~~~i~~la 152 (377)
T 3ju7_A 87 TFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEEL-----------KEEVAIVVP---YATFGSWMNLEEYEELE 152 (377)
T ss_dssp SCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHH-----------GGGEEEECC---BCGGGBCCCCHHHHHHH
T ss_pred CcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcC-----------CCCceEEEE---ECCCCCccCHHHHHHHH
Confidence 9999999999999999988753 899999988431 1 1334442 34568888999999999
Q ss_pred HHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEccc--ccccCCc-ccEEEe-CHHHHHHHHhhCCC------
Q 040324 267 KRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTF--SKSFGSY-GGYIAG-SKELIQYLKYNCPA------ 336 (488)
Q Consensus 267 ~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~--sK~~g~~-Gg~i~~-~~~~~~~~~~~~~~------ 336 (488)
+ ||+++|+|++|++|... .++. .|-... |+.+.|| +|.++++ ||+++. ++++.+.++.....
T Consensus 153 ~-~~~~vi~D~a~a~g~~~-~~~~----~g~~~~--d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~ 224 (377)
T 3ju7_A 153 K-KGVPVVVDAAPGFGLMN-GGMH----YGQDFS--GMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNR 224 (377)
T ss_dssp H-TTCCBEEECTTCTTCEE-TTEE----TTTTCS--SEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTS
T ss_pred h-cCCEEEEECCCccCCeE-CCEe----ccCCCC--cEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCC
Confidence 9 99999999999866532 1111 110012 4444454 6999862 366665 57777777654321
Q ss_pred ----CcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC---CeecCCCCC----CeEEEEe
Q 040324 337 ----HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG---FEVLGDNDS----PVMPIMV 405 (488)
Q Consensus 337 ----~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~~~~~----~~~~~~~ 405 (488)
..+...+++..++.+++.++.+ +...++.+++.+++.+.|++++ +.+...... .++++.+
T Consensus 225 ~~~~~g~~~~~~~~~aa~~~~~l~~l---------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (377)
T 3ju7_A 225 ECTMMGFNCKMSEYAAAIGIATMKKW---------DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILC 295 (377)
T ss_dssp CBCSSCCBCCCCHHHHHHHHHHHHTH---------HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEEC
T ss_pred ceeeccccCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEe
Confidence 1123447888877777777644 5677888888899999998874 222221111 2335554
Q ss_pred CCcchHHHHHHHHHHCCceEEeecCC-Cc---c------C---------CCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 406 YNPAKVSSFSRECLKQNVAIVTVGFP-AT---P------L---------LLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 406 ~~~~~~~~~~~~l~~~Gi~v~~~~~~-~~---~------~---------~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
.......++.+.|.++||.+.. +|+ .. + . ....+||.++..+|++|+++++++|.+++..
T Consensus 296 ~~~~~~~~l~~~L~~~gI~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 296 PEEVRNKQVIEDLKKQKIEARL-YFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp CTTSCHHHHHHHHHTTTBCCBC-TTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred CChhhHHHHHHHHHHCCCceec-ccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 4333467899999999998875 331 10 0 0 1257999999999999999999999887654
No 212
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.91 E-value=3.9e-22 Score=205.60 Aligned_cols=305 Identities=13% Similarity=0.065 Sum_probs=204.7
Q ss_pred ChhhHHHHHHH----HHHHhCCC-----------CeEEeCCcHHHHhhhhhccc-------------------CCCcEEE
Q 040324 144 TLALHNELEEC----VARFVGKP-----------AAIVFGMGYVTNSSILPVLM-------------------GKGSLII 189 (488)
Q Consensus 144 ~~~~~~~l~~~----la~~~g~~-----------~~i~~~sGs~a~~~~~~~~~-------------------~~~~~Vl 189 (488)
..+...++|+. +++++|.+ ..+++++||++|..++.+.. .+++.|+
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi 186 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence 34555556655 46666765 36888899999966554431 1346899
Q ss_pred EeCCCchHHHHHHHhcCCeEEEeeCC----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHH
Q 040324 190 SDSLNHNSIVNGARGSGATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITI 265 (488)
Q Consensus 190 ~~~~~h~~~~~~~~~~g~~v~~~~~~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l 265 (488)
++...|.++..+++..|.+++.++.+ |+++|++.|++....+ ....+|++....+..|.+.|+++|.++
T Consensus 187 ~s~~~H~s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~-------~~~~~v~~~~~~t~~G~~~~l~~I~~l 259 (475)
T 3k40_A 187 CSDQAHSSVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEG-------LIPFYAVVTLGTTNSCAFDYLDECGPV 259 (475)
T ss_dssp EETTSCHHHHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTT-------CEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred ECCCchHHHHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCC-------CccEEEEEEecCCCCcCcCCHHHHHHH
Confidence 99999999999999999999999874 8999999998754322 123344444455678999999999999
Q ss_pred HHHcCcEEEEEcccccccc-CCCCCCcchhcCCCCCCccEEEcccccccCCc-c-cEEEeC-HHHH-HHHHhhCCCCc--
Q 040324 266 CKRYKAYTYLDEAHSIGAV-GKTGRGVCELLGVDTSDVDIMMGTFSKSFGSY-G-GYIAGS-KELI-QYLKYNCPAHL-- 338 (488)
Q Consensus 266 ~~~~g~~li~DE~~s~g~~-g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~-G-g~i~~~-~~~~-~~~~~~~~~~~-- 338 (488)
|++||+++++|++|+.+.+ .+..+.. ..++ ...|.+..+++|+++.+ | |+++.+ ++.. +.+.... .+.
T Consensus 260 a~~~~~~lhvD~A~~~~~~~~~~~~~~--~~gi--~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~-~yl~~ 334 (475)
T 3k40_A 260 GNKHNLWIHVDAAYAGSAFICPEYRHL--MKGI--ESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDP-LYLKH 334 (475)
T ss_dssp HHHTTCEEEEECTTGGGGGGSGGGGGG--GTTG--GGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------
T ss_pred HHHhCCeEEEeHHhHHHHHhCHhhHHH--hcCc--ccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCc-cccCC
Confidence 9999999999999985433 1111111 1233 23588889999998753 3 555544 4332 2221110 000
Q ss_pred -----------ccC-CCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCeEEEEe
Q 040324 339 -----------YAT-SISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVMPIMV 405 (488)
Q Consensus 339 -----------~~~-~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 405 (488)
++. ...+..+....++|+.+. .+..++++++..++++++++.|++. |+++..++..+++++.+
T Consensus 335 ~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~ 410 (475)
T 3k40_A 335 DMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG----VENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRL 410 (475)
T ss_dssp --------------CCCGGGTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEE
T ss_pred CcCCCCCCcccccccCCCcccHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEe
Confidence 000 011112233444555441 1256788899999999999999998 88888776678887776
Q ss_pred CC-cchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecC-CCCHHHHHHHHHHHHHHHHHh
Q 040324 406 YN-PAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISA-SHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 406 ~~-~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~-~~t~edid~~l~~l~~~~~~~ 467 (488)
.. .....++.++|.++|..... |....+..++|+++.. ..|++||++++++|+++.+++
T Consensus 411 ~~~~~~~~~l~~~L~~~g~~~~~---~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 411 KGSNERNEALLKRINGRGHIHLV---PAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp SSCHHHHHHHHHHHHHHTSCBCE---EEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCcEEEE---eeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 43 34467899999999765432 2333455799999753 458999999999999998876
No 213
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.91 E-value=1.1e-22 Score=205.38 Aligned_cols=245 Identities=16% Similarity=0.223 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHHhCCCCeEE---eCCcHHHHhhhhhcccCCCcEEEEeC-CCchHHHH-----------HHHhcCCeEEE
Q 040324 147 LHNELEECVARFVGKPAAIV---FGMGYVTNSSILPVLMGKGSLIISDS-LNHNSIVN-----------GARGSGATIRV 211 (488)
Q Consensus 147 ~~~~l~~~la~~~g~~~~i~---~~sGs~a~~~~~~~~~~~~~~Vl~~~-~~h~~~~~-----------~~~~~g~~v~~ 211 (488)
...+|++.+|+++|.+.+++ ++||++|+..++.+++++||.|+++. +.|+.+.. .++..|.+++.
T Consensus 75 g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~ 154 (427)
T 3hvy_A 75 GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKM 154 (427)
T ss_dssp HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEE
T ss_pred hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEE
Confidence 46899999999999998888 89999999999999999999999998 88876652 34456889988
Q ss_pred eeC----CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcC----cCCCCCCCCChHHHHHHHHH--cCcEEEEEccccc
Q 040324 212 FQH----NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEG----IYSMEGELCKLPEIITICKR--YKAYTYLDEAHSI 281 (488)
Q Consensus 212 ~~~----~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~----v~s~~G~~~~l~~l~~l~~~--~g~~li~DE~~s~ 281 (488)
++. .|++++++++++. + ++.+|++++ +.++.|.+.++++|+++|++ +|+++++|++|+.
T Consensus 155 v~~~~~~~d~e~l~~~i~~~----------~-~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~ 223 (427)
T 3hvy_A 155 VDLKDGKVDINTVKEELKKD----------D-SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGE 223 (427)
T ss_dssp CCCBTTBCCHHHHHHHHHHC----------T-TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCT
T ss_pred ecCCCCCcCHHHHHHHhhCC----------C-CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccc
Confidence 887 6899999998741 0 345667777 88999999999999999999 8999999999985
Q ss_pred cccCCCCCCcchhcCCCCCCccEEEcccccccCC----cccEEEeCHHHHHHHHhh--CCCCcccCCCCHHHHHHHHHHH
Q 040324 282 GAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS----YGGYIAGSKELIQYLKYN--CPAHLYATSISPPAAEQIISAI 355 (488)
Q Consensus 282 g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~----~Gg~i~~~~~~~~~~~~~--~~~~~~~~~~~p~~~aa~~a~L 355 (488)
+.++.. . . +.+.|++++|++|.+|+ .||++++++++++.++.. ..+.....+.++..+..++..+
T Consensus 224 ~~~~~~--p-~------~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl 294 (427)
T 3hvy_A 224 FVEEKE--P-T------DVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGL 294 (427)
T ss_dssp TTSSSC--G-G------GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH
T ss_pred cccCCC--C-c------ccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhH
Confidence 443211 1 1 12358999999999986 359999999999998873 2322222222222234444555
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCC-----eEEEEeCCcchHHHHHHHHHHC
Q 040324 356 QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP-----VMPIMVYNPAKVSSFSRECLKQ 421 (488)
Q Consensus 356 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 421 (488)
+.+ +.+.++..+++.++.+.|++.|+.+.+. .++ ++++.+.++..+.+|++.|...
T Consensus 295 ~~~---------~~r~~~~~~~a~~la~~L~~~g~~V~p~-~~~~~~~li~~~~l~~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 295 FMA---------PHVTIEAVKGAVFCARIMELAGFDVLPK-YNDKRTDIIQAIKFNDEKKLIDFIKGIQTA 355 (427)
T ss_dssp HHH---------HHHHHHHHHHHHHHHHHHHHTTCEEESC-TTSCCSSSEEEEECSSHHHHHHHHHHHHHT
T ss_pred hHH---------HHHHHHHHHHHHHHHHHHHhCCCeecCC-CCCCCceEEEEEeCCCHHHHHHHHHHhccc
Confidence 543 5688889999999999999999988543 444 8899998888888999999875
No 214
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.91 E-value=9.3e-23 Score=206.02 Aligned_cols=246 Identities=16% Similarity=0.202 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHHHhCCCCeEE---eCCcHHHHhhhhhcccCCCcEEEEeC-CCchHHHHH-----------HHhcCCeEE
Q 040324 146 ALHNELEECVARFVGKPAAIV---FGMGYVTNSSILPVLMGKGSLIISDS-LNHNSIVNG-----------ARGSGATIR 210 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~~~i~---~~sGs~a~~~~~~~~~~~~~~Vl~~~-~~h~~~~~~-----------~~~~g~~v~ 210 (488)
....+|++.+|+++|.+.+++ ++||++|+..++.+++++||.|+++. +.|+.+... ++..|.+++
T Consensus 73 ~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~ 152 (427)
T 3i16_A 73 IGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYK 152 (427)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEE
T ss_pred HHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEE
Confidence 346899999999999998888 89999999989999999999999998 888876633 345688888
Q ss_pred EeeC-----CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcC----cCCCCCCCCChHHHHHHHHH--cCcEEEEEccc
Q 040324 211 VFQH-----NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEG----IYSMEGELCKLPEIITICKR--YKAYTYLDEAH 279 (488)
Q Consensus 211 ~~~~-----~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~----v~s~~G~~~~l~~l~~l~~~--~g~~li~DE~~ 279 (488)
.++. .|++++++.+++. .++.+|++++ +.++.|.+.++++|+++|++ +|+++++|++|
T Consensus 153 ~v~~~~~g~~D~e~l~~~l~~~-----------~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~ 221 (427)
T 3i16_A 153 QVDLKEDGKPNLEEIEKVLKED-----------ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCY 221 (427)
T ss_dssp ECCCCTTSSCCHHHHHHHHHTC-----------TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred EecCccCCCcCHHHHHHHhhCC-----------CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 8887 4899999988731 0345666777 88999999999999999999 99999999999
Q ss_pred cccccCCCCCCcchhcCCCCCCccEEEcccccccCC----cccEEEeCHHHHHHHHhhCCCCcccCCCCH-HH-HHHHHH
Q 040324 280 SIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS----YGGYIAGSKELIQYLKYNCPAHLYATSISP-PA-AEQIIS 353 (488)
Q Consensus 280 s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~----~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~p-~~-~aa~~a 353 (488)
+.+.+... .. ..++|++++|++|.+|+ .||++++++++++.++........+....| .. +..++.
T Consensus 222 ~~~~~~~~---p~------~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~ 292 (427)
T 3i16_A 222 GEFMDTKE---PT------DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQ 292 (427)
T ss_dssp TTTSSSSC---GG------GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHH
T ss_pred ccccccCC---cc------ccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHH
Confidence 85442211 11 12358999999999986 359999999999998873221122222222 22 334444
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCC-----eEEEEeCCcchHHHHHHHHHHC
Q 040324 354 AIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP-----VMPIMVYNPAKVSSFSRECLKQ 421 (488)
Q Consensus 354 ~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 421 (488)
.++. ...+.+++.+++.++.+.|++.|+.+.+. .++ ++++.+.+...+.+|++.|...
T Consensus 293 gl~~---------~~~r~~~~~~~a~~la~~L~~~g~~V~p~-~~~~~~~~i~~i~l~~~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 293 GLFL---------APHISMEALKGAILCSRIMELAGFEVMPK-YDEKRSDIIQSIKFNDKDKLIEFCKGIQTG 355 (427)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHHHHHHHTTCEEESC-TTSCCSSSCEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHH---------HHHHHHHHHHHHHHHHHHHHhCCCeecCC-CCCCCccEEEEEEECCHHHHHHHHHHHhhc
Confidence 4443 36788899999999999999999988543 455 8999998888888999999886
No 215
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.91 E-value=8.2e-24 Score=210.18 Aligned_cols=321 Identities=14% Similarity=0.160 Sum_probs=212.1
Q ss_pred eeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCc-----ccCCCChhhHHHHHHHHHHHhCCC--CeEEeCCc--H
Q 040324 101 RCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSS-----RVDGGTLALHNELEECVARFVGKP--AAIVFGMG--Y 171 (488)
Q Consensus 101 ~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~-----~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sG--s 171 (488)
+++++. .|....++.+.+++.+.++++ ...+.. ....+..+..+++++.+++++|.+ +.+++++| +
T Consensus 3 ~~~~~~----~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt 77 (360)
T 1w23_A 3 QVFNFN----AGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGAS 77 (360)
T ss_dssp CCEECC----SSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred ceEeec----CCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcch
Confidence 445554 233344677888887777553 111110 001233446789999999999975 35666554 5
Q ss_pred HHHhhhhhcccC---CCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC------CHHHHHH-HHHHHHhcCCCCCCCCCce
Q 040324 172 VTNSSILPVLMG---KGSLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEE-VLREQIAEGQPRTRRPWKK 241 (488)
Q Consensus 172 ~a~~~~~~~~~~---~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------d~~~Le~-~l~~~~~~~~p~~~~~~~~ 241 (488)
+++..++..+.. +++.|+++.++|.+.. .++..| +++.++.+ |+++|++ .+.+ ++
T Consensus 78 ~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~-------------~~ 142 (360)
T 1w23_A 78 LQFTMLPMNLLTKGTIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNE-------------ND 142 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCT-------------TE
T ss_pred HHHHHHHHHhcCCCCcccEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccCC-------------CC
Confidence 666666666654 4677888877777643 356668 88887742 5566665 4421 33
Q ss_pred EEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cEE
Q 040324 242 IMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYI 320 (488)
Q Consensus 242 ~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i 320 (488)
.+|++..+.+++|.+.+ +++++||+++|+||+|+.+... .++ .+.|+++.|++|.+|.+| |++
T Consensus 143 k~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~---------~~~--~~~di~~~s~sK~~~~~G~G~~ 206 (360)
T 1w23_A 143 AYLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRP---------LKV--NQFGMIYAGAQKNLGPSGVTVV 206 (360)
T ss_dssp EEEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSC---------CCG--GGCSEEEEETTTTTSCTTCEEE
T ss_pred CEEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCC---------cCc--ccCCEEEEEcccccCCCCcEEE
Confidence 45556678888998765 3334899999999999854321 111 122789999999999777 999
Q ss_pred EeCHHHHHHHHhhCC-----------CCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC
Q 040324 321 AGSKELIQYLKYNCP-----------AHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG 389 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~-----------~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 389 (488)
++++++++.+..... .+.+ .+.+...++++.++++.+... ...+++.++++++.+++.+.|++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~ 282 (360)
T 1w23_A 207 IVKKDLLNTKVEQVPTMLQYATHIKSDSLY-NTPPTFSIYMLRNVLDWIKDL---GGAEAIAKQNEEKAKIIYDTIDESN 282 (360)
T ss_dssp EEEHHHHCSCCTTCCGGGCHHHHHHTTTCS-SCCCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEcHHHHhhcccCCcchhhhhhhhhccCCC-CCCCHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999888765543221 1111 235666666777788766311 1346788899999999999999886
Q ss_pred -C-eecC-CC-CC-CeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 390 -F-EVLG-DN-DS-PVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 390 -~-~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
+ .... +. .+ .++++.+.......++.++|.++||.+.+ +.. ..+++||+++..+|++|+++++++|++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~~~----~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 283 GFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLN-GHR----SVGGCRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp TSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCB-CCT----TTCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcccccCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeec-CCC----CCCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4 4431 21 23 47777765544566888999999998864 211 13689999988889999999999999887
Q ss_pred HH
Q 040324 465 DL 466 (488)
Q Consensus 465 ~~ 466 (488)
++
T Consensus 358 ~~ 359 (360)
T 1w23_A 358 EN 359 (360)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 216
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.90 E-value=2.6e-22 Score=203.97 Aligned_cols=285 Identities=15% Similarity=0.112 Sum_probs=200.3
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHHHH----HhcCCeEEEe-eCCCHHH
Q 040324 145 LALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGA----RGSGATIRVF-QHNTPSH 219 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~----~~~g~~v~~~-~~~d~~~ 219 (488)
.+...++++++|++++.++++++++|++|+..++.++.++++.|+++.+.|+++...+ +..|.++..+ +.+|+++
T Consensus 57 ~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 136 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEE 136 (421)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHH
T ss_pred ChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHH
Confidence 4667899999999999988999999999998888888899999999999999987765 6779999999 8889999
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCC
Q 040324 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDT 299 (488)
Q Consensus 220 Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p 299 (488)
+++.+++ ++.+|+++++.++.|.+.++++|+++|++||+++|+||+|+ ++|..+... +.
T Consensus 137 l~~~i~~-------------~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~--~~g~~~~~~----~~-- 195 (421)
T 2ctz_A 137 FLALTDE-------------KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFG--MGGYLLRPL----AW-- 195 (421)
T ss_dssp HHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGG--GGGTSCCGG----GG--
T ss_pred HHHhhcc-------------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcc--cccccCCcc----cc--
Confidence 9888754 45677789999999999999999999999999999999993 233333221 22
Q ss_pred CCccEEEcccccccCCcc----cEEEeC--HHH----HHHHHhh---CC---------------------CCcccCCCCH
Q 040324 300 SDVDIMMGTFSKSFGSYG----GYIAGS--KEL----IQYLKYN---CP---------------------AHLYATSISP 345 (488)
Q Consensus 300 ~~~di~~~t~sK~~g~~G----g~i~~~--~~~----~~~~~~~---~~---------------------~~~~~~~~~p 345 (488)
+.|+++.|++|.+|++| |+++.+ +++ .+.+... .+ ...++..++|
T Consensus 196 -~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~ 274 (421)
T 2ctz_A 196 -GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGP 274 (421)
T ss_dssp -TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCH
T ss_pred -CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCH
Confidence 24899999999998643 455542 111 1222210 00 0113345788
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecC------------------CCCCCeEEEEeC
Q 040324 346 PAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLG------------------DNDSPVMPIMVY 406 (488)
Q Consensus 346 ~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~------------------~~~~~~~~~~~~ 406 (488)
..+++++..++.+ ..+.++..++.+++.+.|++. ++..+. ...+.++.+.+.
T Consensus 275 ~~a~~~~~~l~~l---------~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~ 345 (421)
T 2ctz_A 275 FEAWVVLLGMETL---------SLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLK 345 (421)
T ss_dssp HHHHHHHHHHTTH---------HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEET
T ss_pred HHHHHHHcCcchH---------HHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeC
Confidence 8888777777654 456667778999999999886 555431 123578888876
Q ss_pred Cc-chHHHHHHHHHHCCceEEee------cCCCc--------------cCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 407 NP-AKVSSFSRECLKQNVAIVTV------GFPAT--------------PLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 407 ~~-~~~~~~~~~l~~~Gi~v~~~------~~~~~--------------~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
.. .....+.+.|...++.+... .+|.. ...++.+|+++.. ||+|.+++.|++++
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e~~~~li~~l~~al 420 (421)
T 2ctz_A 346 GGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp THHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHh
Confidence 43 33445555543333333211 11111 0124799999854 57777777777764
No 217
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.90 E-value=1.4e-21 Score=203.74 Aligned_cols=303 Identities=16% Similarity=0.155 Sum_probs=204.8
Q ss_pred hhhHHHHHHHHHHHhCCC--CeEEeCCcHHHHhhhhhccc-------C-CCc------EEEEeCCCchHHHHHHHhcCC-
Q 040324 145 LALHNELEECVARFVGKP--AAIVFGMGYVTNSSILPVLM-------G-KGS------LIISDSLNHNSIVNGARGSGA- 207 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~~~~~~-------~-~~~------~Vl~~~~~h~~~~~~~~~~g~- 207 (488)
.....++++.+++++|.+ ..+++++|+++|..++.++. + +|+ .|+++...|+++..+++..|.
T Consensus 147 ~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g 226 (515)
T 2jis_A 147 VLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLG 226 (515)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCC
Confidence 345567788899999975 57778888999876665542 1 354 899999999999999988887
Q ss_pred --eEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEcccc
Q 040324 208 --TIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHS 280 (488)
Q Consensus 208 --~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s 280 (488)
+++.++.+ |+++|++.|++...++ .++.+|++....+..|.+.|+++|.++|++||++|++|++|+
T Consensus 227 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g-------~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~ 299 (515)
T 2jis_A 227 TDSVRVVKADERGKMVPEDLERQIGMAEAEG-------AVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWG 299 (515)
T ss_dssp GGGEEEECBCTTSCBCHHHHHHHHHHHHHTT-------CEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTG
T ss_pred CCcEEEEecCCCCcCCHHHHHHHHHHHHhCC-------CCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhh
Confidence 88888865 8999999998654332 134567777778889999999999999999999999999998
Q ss_pred ccccCCCCCCcchhcCCCCCCccEEEcccccccCCc-c-cEEEeCHH--HHHHHHhhCCCCc------------cc----
Q 040324 281 IGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSY-G-GYIAGSKE--LIQYLKYNCPAHL------------YA---- 340 (488)
Q Consensus 281 ~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~-G-g~i~~~~~--~~~~~~~~~~~~~------------~~---- 340 (488)
.+.+... .......++ .++|+++.+++|+++++ | |+++.+++ +++........+. ++
T Consensus 300 ~~~~~~~-~~~~~~~g~--~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 376 (515)
T 2jis_A 300 GSVLLSQ-THRHLLDGI--QRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVV 376 (515)
T ss_dssp GGGGGCT-TTGGGGTTG--GGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCS
T ss_pred hHHHhCh-hhHhhcCCC--ccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCC
Confidence 5554211 111112233 24589999999999753 4 88877755 6554211000000 00
Q ss_pred ---CCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCeEEEEeCCc--------
Q 040324 341 ---TSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVMPIMVYNP-------- 408 (488)
Q Consensus 341 ---~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-------- 408 (488)
.......+.++++++.. +..+++.++..++++++.+.|++. |+++..++....+.+.....
T Consensus 377 ~~~rr~~al~~~~~l~~lg~-------~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~ 449 (515)
T 2jis_A 377 QCGRRVDCLKLWLMWKAQGD-------QGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQES 449 (515)
T ss_dssp CSSCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTS
T ss_pred CCCCcccHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccc
Confidence 01112333333344332 145678889999999999999987 88887655445554433211
Q ss_pred ch--------HHHHHHHHHHCCceEEeecCCCccCCCCeEEEee-cCCCCHHHHHHHHHHHHHHHHH
Q 040324 409 AK--------VSSFSRECLKQNVAIVTVGFPATPLLLARARICI-SASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 409 ~~--------~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~-~~~~t~edid~~l~~l~~~~~~ 466 (488)
.. ...+.+.|.++|+.+.... ......+++|+++ +..+|++|+++++++|++++++
T Consensus 450 ~~~~~~l~~~~~~l~~~l~~~G~~~~~~~--~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 450 PDYHERLSKVAPVLKERMVKEGSMMIGYQ--PHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp TTHHHHHHTHHHHHHHHHHHHTSCEEEEE--EETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCEEEEEE--EECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 11 1136777888897764211 1111236899999 8899999999999999988754
No 218
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.89 E-value=6.3e-21 Score=197.47 Aligned_cols=300 Identities=13% Similarity=0.044 Sum_probs=199.5
Q ss_pred HHHHHHHHHHhCCCC-----------eEEeCCcHHHHhhhhhcccCC---------C---------c-EEEEeCCCchHH
Q 040324 149 NELEECVARFVGKPA-----------AIVFGMGYVTNSSILPVLMGK---------G---------S-LIISDSLNHNSI 198 (488)
Q Consensus 149 ~~l~~~la~~~g~~~-----------~i~~~sGs~a~~~~~~~~~~~---------~---------~-~Vl~~~~~h~~~ 198 (488)
.++.+.+++++|.+. .+++++||+||..++.++..+ + + .|+++.+.|.++
T Consensus 116 ~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~ 195 (486)
T 1js3_A 116 TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSV 195 (486)
T ss_dssp HHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHH
T ss_pred HHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHH
Confidence 345555677778753 578889999986655443210 2 3 488899999999
Q ss_pred HHHHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEE
Q 040324 199 VNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYT 273 (488)
Q Consensus 199 ~~~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~l 273 (488)
..+++..|.+++.++.+ |+++|++.|++....| ....+|++....++.|.+.|+++|.++|++||+++
T Consensus 196 ~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g-------~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~l 268 (486)
T 1js3_A 196 ERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAG-------LIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWL 268 (486)
T ss_dssp HHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTT-------CEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEE
T ss_pred HHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCC-------CCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEE
Confidence 99999999999999864 8999999998753321 12235555555678899999999999999999999
Q ss_pred EEEccccccccC-CCCCCcchhcCCCCCCccEEEcccccccCCc-c-cEEEeC-HHH-HHHHH-------hhCC----CC
Q 040324 274 YLDEAHSIGAVG-KTGRGVCELLGVDTSDVDIMMGTFSKSFGSY-G-GYIAGS-KEL-IQYLK-------YNCP----AH 337 (488)
Q Consensus 274 i~DE~~s~g~~g-~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~-G-g~i~~~-~~~-~~~~~-------~~~~----~~ 337 (488)
++|++|+.+.+- +..+.. ..++ .++|+++.+++|.++.+ | |+++.+ ++. .+.+. .... ..
T Consensus 269 hvD~a~g~~~~~~~~~~~~--~~g~--~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~ 344 (486)
T 1js3_A 269 HVDAAYAGSAFICPEFRHL--LNGV--EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLIT 344 (486)
T ss_dssp EEECTTGGGGGGSTTTGGG--GTTG--GGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCC
T ss_pred EEehhhHHHHHHCHHHHHH--hcCc--cccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCC
Confidence 999999854432 122211 1233 24588888999999753 3 777775 433 33221 1000 00
Q ss_pred -------cccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCeEEEEeCCc-
Q 040324 338 -------LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVMPIMVYNP- 408 (488)
Q Consensus 338 -------~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~- 408 (488)
..+...... +..++++.+. .+...++.++..++++++.+.|++. |+++..++...++.+.+...
T Consensus 345 ~~~~~~~~~~rr~~~~---~~~~al~~~g----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~ 417 (486)
T 1js3_A 345 DYRHWQLPLGRRFRSL---KMWFVFRMYG----VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSD 417 (486)
T ss_dssp CGGGSSSCSCCCCTHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCH
T ss_pred CccccCCCCCCchhHH---HHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChH
Confidence 001112223 3334444331 1256778888999999999999987 88887655556666666432
Q ss_pred chHHHHHHHHHHCCceEEe-ecCCCccCCCCeEEEee-cCCCCHHHHHHHHHHHHHHHHHhCCc
Q 040324 409 AKVSSFSRECLKQNVAIVT-VGFPATPLLLARARICI-SASHTKEDLIEALEVISRIGDLVGIK 470 (488)
Q Consensus 409 ~~~~~~~~~l~~~Gi~v~~-~~~~~~~~~~~~iRi~~-~~~~t~edid~~l~~l~~~~~~~~~~ 470 (488)
....++.+.|.++|+.+.. ..+ .+.+++|+++ +...|++|+++++++|+++++++..+
T Consensus 418 ~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~ 477 (486)
T 1js3_A 418 GLNEALLERINSARKIHLVPCRL----RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLAA 477 (486)
T ss_dssp HHHHHHHHHHHHHTSCBCEEEEE----TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCEEEEEEEE----CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 2346788999988865432 111 2346899996 44578999999999999998877443
No 219
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.89 E-value=5.4e-22 Score=201.38 Aligned_cols=244 Identities=14% Similarity=0.180 Sum_probs=184.8
Q ss_pred hhHHHHHHHHHHHhCCCCeEE---eCCcHHHHhhhhhcccCCCcEEEEeC-CCchHHHHHHHh----------cCCeEEE
Q 040324 146 ALHNELEECVARFVGKPAAIV---FGMGYVTNSSILPVLMGKGSLIISDS-LNHNSIVNGARG----------SGATIRV 211 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~~~i~---~~sGs~a~~~~~~~~~~~~~~Vl~~~-~~h~~~~~~~~~----------~g~~v~~ 211 (488)
...+++++.+++++|.+.+.+ ++||++|+..++.+++++||.|+++. +.|+++...+.+ .|.+++.
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~ 144 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNA 144 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEE
T ss_pred hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEE
Confidence 456889999999999987665 88999999999999999999999998 999988866543 5889999
Q ss_pred eeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcC----cCCCCCCCCChHHHHHHHHH--cCcEEEEEcccc
Q 040324 212 FQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEG----IYSMEGELCKLPEIITICKR--YKAYTYLDEAHS 280 (488)
Q Consensus 212 ~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~----v~s~~G~~~~l~~l~~l~~~--~g~~li~DE~~s 280 (488)
++.+ |+++|++.+++ ++.+|++++ +.++.|.+.++++|+++|++ +|++||+||+|+
T Consensus 145 v~~~~~~~~d~e~l~~~l~~-------------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~ 211 (431)
T 3ht4_A 145 VPLTEGGLVDFEAVAAAIHS-------------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYG 211 (431)
T ss_dssp CCBCTTSSBCHHHHHHHCCT-------------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred eCCCCCCCcCHHHHHhhcCC-------------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCCh
Confidence 9874 89999888753 345666665 66777778889999999999 999999999998
Q ss_pred ccccCCCCCCcchhcCCCCCCccEEEcccccccCC----cccEEEeCHHHHHHHHhhC--CCCcccCCCCHHHHHHHHHH
Q 040324 281 IGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS----YGGYIAGSKELIQYLKYNC--PAHLYATSISPPAAEQIISA 354 (488)
Q Consensus 281 ~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~----~Gg~i~~~~~~~~~~~~~~--~~~~~~~~~~p~~~aa~~a~ 354 (488)
.+.++ ... .+ .++|++++|++|.+|+ +||++++++++++.++... .+.....+.++..+.+++..
T Consensus 212 ~~~~~--~~~-~~------~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 282 (431)
T 3ht4_A 212 EFIEE--QEP-CH------VGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQG 282 (431)
T ss_dssp TTSSS--CCG-GG------TTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHH
T ss_pred hhccC--CCc-cc------cCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhH
Confidence 54432 221 11 1348999999999754 4699999999999887632 22222111222223445555
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCC-----eEEEEeCCcchHHHHHHHHHHC
Q 040324 355 IQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP-----VMPIMVYNPAKVSSFSRECLKQ 421 (488)
Q Consensus 355 L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 421 (488)
++.+ +.+.++..+++.++.+.|+++|+++.+. .+. ++++.+.++....++++.|.+.
T Consensus 283 l~~~---------~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 283 FFLA---------PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFDDKDRMIAFCQAIQYA 344 (431)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECCCHHHHHHHHHHHHHT
T ss_pred hhhH---------HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeCCHHHHHHHHHHHHhc
Confidence 5543 5677888999999999999999877433 333 7888888777888999999986
No 220
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.89 E-value=1.7e-21 Score=196.31 Aligned_cols=284 Identities=17% Similarity=0.134 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHh-CC-------CC-eEEeC-CcHHHHhhhhhcccC--CCcEEEEeCCCchHHHHHHHhcCCeEEEeeC-
Q 040324 148 HNELEECVARFV-GK-------PA-AIVFG-MGYVTNSSILPVLMG--KGSLIISDSLNHNSIVNGARGSGATIRVFQH- 214 (488)
Q Consensus 148 ~~~l~~~la~~~-g~-------~~-~i~~~-sGs~a~~~~~~~~~~--~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~- 214 (488)
..+|++.+++++ +. +. .++++ +|++|...++.++.. + |.|+++.|+|+.+...++..|++++.++.
T Consensus 74 ~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 152 (405)
T 3k7y_A 74 TEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFF 152 (405)
T ss_dssp CHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCE
T ss_pred cHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEecc
Confidence 378999999987 22 12 23444 455566666677766 8 99999999999999999999999998874
Q ss_pred --C----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccC
Q 040324 215 --N----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVG 285 (488)
Q Consensus 215 --~----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g 285 (488)
+ |+++|++.+.+. +.+++++++.+.++++|...+ +++|+++|++||+++|+||+|. .+.
T Consensus 153 ~~~~~~~d~~~l~~~l~~~----------~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~--~l~ 220 (405)
T 3k7y_A 153 DYNLIDINYDLFLNDLRNI----------PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ--GFG 220 (405)
T ss_dssp ETTTTEECHHHHHHHHHHS----------CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCT--TTS
T ss_pred ccccCCcCHHHHHHHHHhC----------CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcc--ccc
Confidence 1 788999888752 124556666677899998875 7889999999999999999998 554
Q ss_pred CCCC--C---cchhcCCCCCCccEEEcccccccCCcc---cEEE---eCHHHHHHHHh----hCCCCcccCCCCHHHHHH
Q 040324 286 KTGR--G---VCELLGVDTSDVDIMMGTFSKSFGSYG---GYIA---GSKELIQYLKY----NCPAHLYATSISPPAAEQ 350 (488)
Q Consensus 286 ~~g~--~---~~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~---~~~~~~~~~~~----~~~~~~~~~~~~p~~~aa 350 (488)
..+. . ....... .+..|++.||||+||.+| ||++ .++++++.+.. ... ..++ +.+...+++
T Consensus 221 ~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~~~~~q~~ 296 (405)
T 3k7y_A 221 HTNLEEDVLLIRKFEEK--NIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVR-KFYS-SPVIHTNRI 296 (405)
T ss_dssp SSSTTGGGHHHHHHHTT--TCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHH-TTTS-SCCHHHHHH
T ss_pred CCCcccchHHHHHHHhc--CCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHh-cccC-CCcHHHHHH
Confidence 3221 1 1111121 234688899999999888 9975 36776654432 111 1122 134444444
Q ss_pred HHHHHHH--HhccCCCchHHHHHHHHHHHHHHHHHHHH----hCC----CeecCCCCCCeEEEEeCCcchHHHHHHHHHH
Q 040324 351 IISAIQV--VIGEDGSCRGAQKLARIRENSNFFRSKLQ----KMG----FEVLGDNDSPVMPIMVYNPAKVSSFSRECLK 420 (488)
Q Consensus 351 ~~a~L~~--i~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 420 (488)
+.++|.. +.+ ...++..+.+++++++++.+.+.|+ ++| +.+..+.++.++++.+. . +++++|.+
T Consensus 297 ~~~~l~~~~l~~-~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~--~---~~~~~L~~ 370 (405)
T 3k7y_A 297 LCQLLNNQNLKL-NWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLL--A---KIAEHLKT 370 (405)
T ss_dssp HHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGG--G---GGTTTTTT
T ss_pred HHHHhCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCC--H---HHHHHHHH
Confidence 4444431 000 0011345667789999999999999 876 45666666665554332 1 45667766
Q ss_pred CCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 421 QNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 421 ~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
+||.+.| . + ||+++ ..+++++++++++|+++++.
T Consensus 371 ~gV~v~p----~-----~--Ris~a-~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 371 HHIYIIN----N-----G--RINVS-GITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp TTEECCT----T-----S--EEEGG-GCCTTHHHHHHHHHHHHHHC
T ss_pred CCEeecC----C-----C--eEEEe-ccCHHHHHHHHHHHHHHHhh
Confidence 6999884 1 1 89883 46889999999999998764
No 221
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.89 E-value=2.4e-21 Score=198.84 Aligned_cols=297 Identities=14% Similarity=0.168 Sum_probs=198.9
Q ss_pred hhhHHHHHHHHHHHhCCCC-eEEeCCcHH-HHhhhhhcccC--CCcEEEEeCCCchHHHHHHHhcCCeEEEeeC------
Q 040324 145 LALHNELEECVARFVGKPA-AIVFGMGYV-TNSSILPVLMG--KGSLIISDSLNHNSIVNGARGSGATIRVFQH------ 214 (488)
Q Consensus 145 ~~~~~~l~~~la~~~g~~~-~i~~~sGs~-a~~~~~~~~~~--~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~------ 214 (488)
....+++++.+++++|.+. ++++++|++ +|..++.++.. +++.|++..+.|+++...++..|.+++.++.
T Consensus 132 ~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~ 211 (456)
T 2z67_A 132 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDR 211 (456)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCC
Confidence 3455789999999999864 566666773 45544444322 6778888888999999999999999888764
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcc
Q 040324 215 --NTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVC 292 (488)
Q Consensus 215 --~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~ 292 (488)
.|+++|++.|++.... .+..+|++....++.|.+.|+++|.++|+++|+++++||+|+...+|.... ..
T Consensus 212 ~~~d~~~l~~~i~~~~~~--------~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~-~~ 282 (456)
T 2z67_A 212 VYVPVEDIENAIKKEIEL--------GNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEK-LK 282 (456)
T ss_dssp EECCHHHHHHHHHHHHHT--------TCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH-HH
T ss_pred CCcCHHHHHHHHHHHhhC--------CCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHH-HH
Confidence 2899999998321111 134455556666788999999999999999999999999997333321000 00
Q ss_pred hhcCCCCCCccEEEcccccccCC-cc-cEEEe-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHH
Q 040324 293 ELLGVDTSDVDIMMGTFSKSFGS-YG-GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQ 369 (488)
Q Consensus 293 ~~~~v~p~~~di~~~t~sK~~g~-~G-g~i~~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~ 369 (488)
..+ . .++|+++.|++|.+++ .| |+++. ++++++.+.....+ ..+.++ ..++.+++..+. .+..++
T Consensus 283 ~~~--~-~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g---~~~~~~--~~~~~aal~~l~----~~~~~~ 350 (456)
T 2z67_A 283 KAF--K-YRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPG---RASATP--VVNTLVSLLSMG----SKNYLE 350 (456)
T ss_dssp HHH--T-SCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCS---CBCSHH--HHHHHHHHHHHH----HHHHHH
T ss_pred Hhh--C-CCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCC---CCCCCH--HHHHHHHHHHHH----HHHHHH
Confidence 111 1 1458899999998653 44 88888 57888877543222 111232 233444454442 124567
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCce-EEee-------cCCCccCCC
Q 040324 370 KLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVA-IVTV-------GFPATPLLL 437 (488)
Q Consensus 370 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-v~~~-------~~~~~~~~~ 437 (488)
+.++..++++++.+.|+++ |+.+..+. +++++.+..+....++.+.|.++|+. +... |........
T Consensus 351 ~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~ 428 (456)
T 2z67_A 351 LVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTH 428 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccccCc
Confidence 8889999999999999987 87666554 45555442112246789999999862 2222 111112224
Q ss_pred CeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 438 ARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 438 ~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
+++|++++..+|++|+|+++++|++++
T Consensus 429 ~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 429 DYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred chhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 689999988899999999999998653
No 222
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.89 E-value=9.9e-22 Score=198.21 Aligned_cols=286 Identities=12% Similarity=0.060 Sum_probs=195.4
Q ss_pred hhHHHHHHHHHHHhCCC---CeEE-eCCcHHHHhhhhhcccCCCcEEEEeCCCchHHHH-HHHhc--CCeEEEeeCCCHH
Q 040324 146 ALHNELEECVARFVGKP---AAIV-FGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVN-GARGS--GATIRVFQHNTPS 218 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~---~~i~-~~sGs~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~-~~~~~--g~~v~~~~~~d~~ 218 (488)
+..+++++.+++++|.+ ++++ +++|++++..++.++.+++ .+.+..+.|+.... .+... |+.++.++.++-.
T Consensus 78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~ 156 (398)
T 2fyf_A 78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGS 156 (398)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCCCC
Confidence 45689999999999975 3455 5677778888888888776 23335666653222 23444 6777777654100
Q ss_pred HHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCC
Q 040324 219 HLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD 298 (488)
Q Consensus 219 ~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~ 298 (488)
.....+ . +.++ +|++..+.+++|.+.++++|.++ +|+++|+||+|+.+... .++
T Consensus 157 ~~~~~i-------~-----~~~~-~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~---------~~~- 210 (398)
T 2fyf_A 157 APEPQT-------D-----PSVD-VIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLP---------VDI- 210 (398)
T ss_dssp CCCCCC-------C-----TTCS-EEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSC---------CCG-
T ss_pred CCCccc-------c-----CCCC-EEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcc---------cCc-
Confidence 000001 1 1234 45455778889999998888877 89999999999854321 111
Q ss_pred CCCccEEEcccccccCCcc--cEEEeCHHHHHHHHhhC--------------------CCCcccCCCCHHHHHHHHHHHH
Q 040324 299 TSDVDIMMGTFSKSFGSYG--GYIAGSKELIQYLKYNC--------------------PAHLYATSISPPAAEQIISAIQ 356 (488)
Q Consensus 299 p~~~di~~~t~sK~~g~~G--g~i~~~~~~~~~~~~~~--------------------~~~~~~~~~~p~~~aa~~a~L~ 356 (488)
.++|+++.|++|.+|++| |+++.++++++.++... ....+ .+.+...++++.++|+
T Consensus 211 -~~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~a~~~al~ 288 (398)
T 2fyf_A 211 -AETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTY-NTPAIATLALLAEQID 288 (398)
T ss_dssp -GGCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCS-SCCCHHHHHHHHHHHH
T ss_pred -ccCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCC-CCCCHHHHHHHHHHHH
Confidence 235899999999998864 88899999888764310 01122 2356666667777887
Q ss_pred HHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecC--C-CCCC-eEEEEeCCcchHHHHHHHHHHCCceEEeecCC
Q 040324 357 VVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLG--D-NDSP-VMPIMVYNPAKVSSFSRECLKQNVAIVTVGFP 431 (488)
Q Consensus 357 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~-~~~~-~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~ 431 (488)
.+.+. ...++..++++++.+++.+.|+++ |+.+.. + ..++ ++++.+.......++.+.|.++||.+.+ ++.
T Consensus 289 ~~~~~---g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~-g~~ 364 (398)
T 2fyf_A 289 WLVGN---GGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTE-PYR 364 (398)
T ss_dssp HHHHH---TSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCS-CCT
T ss_pred HHHHc---cCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEec-Ccc
Confidence 65321 015678889999999999999998 787763 3 1245 7777775444677899999999999975 221
Q ss_pred CccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 432 ATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 432 ~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
..+.+.+||+++..+|++|+++++++|++++++
T Consensus 365 --~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 365 --KLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp --TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred --cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 223578999998888999999999999998764
No 223
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.89 E-value=3.5e-22 Score=204.33 Aligned_cols=284 Identities=15% Similarity=0.086 Sum_probs=197.3
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcH-HHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC--C-----
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGY-VTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQH--N----- 215 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs-~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~--~----- 215 (488)
......++++.+|+ +|.++.+++++|+ +++..++.+++++|+.|+++.++|.++..++...|++++.++. +
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~ 133 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTNH 133 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSS
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCc
Confidence 34456899999999 9987666766665 6788888888999999999999999999999999999888775 3
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCc
Q 040324 216 ----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGV 291 (488)
Q Consensus 216 ----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~ 291 (488)
|+++| +. +..++++++. .+..|.+.++++|+++|++||++||+||+|+. .++..+. .
T Consensus 134 ~~~~d~~~l---~~------------~~~~~v~~~~--~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~-~ 194 (446)
T 2x3l_A 134 YNKVNLSRL---NN------------DGHKLVVLTY--PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGF-P 194 (446)
T ss_dssp EEEEEC----------------------CCEEEEES--SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTS-C
T ss_pred CCCCCHHHH---cC------------CCceEEEEEC--CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCC-C
Confidence 23443 11 1245555555 34489999999999999999999999999984 2333232 1
Q ss_pred chhcCCCCCCccEEEcccccccCC-cc-cEEEeCHHHHH--HHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchH
Q 040324 292 CELLGVDTSDVDIMMGTFSKSFGS-YG-GYIAGSKELIQ--YLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRG 367 (488)
Q Consensus 292 ~~~~~v~p~~~di~~~t~sK~~g~-~G-g~i~~~~~~~~--~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~ 367 (488)
...... +.|+++.|++|++++ .| |++++++++++ .+...... ..+++.+...+++..++++.+... ..
T Consensus 195 ~~~~~~---g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~-~~~~s~~~~~~aal~~a~~~l~~~----g~ 266 (446)
T 2x3l_A 195 DSTLNY---QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSY-FQTSSPSYLIMASLESAAQFYKTY----DS 266 (446)
T ss_dssp CCGGGG---TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHH-HSCSSCCHHHHHHHHHHHHHHHHC----CC
T ss_pred CChHHc---CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHh----CH
Confidence 111111 237999999997654 34 88888776544 33221110 112335666666666677776421 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCC
Q 040324 368 AQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISAS 447 (488)
Q Consensus 368 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~ 447 (488)
+++.++..++.+++++. |+.+..+.+...+++.+. .....++.+.|.++||.+...+ .+.+|++++..
T Consensus 267 ~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~-~~~~~~l~~~L~~~GI~v~~~g-------~~~iRi~~~~~ 334 (446)
T 2x3l_A 267 TLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYE-GFTGHDIQNWFMNAHIYLELAD-------DYQALAILPLW 334 (446)
T ss_dssp HHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECT-TSCHHHHHHHHHHTTEEESEEC-------SSCEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeC-CcCHHHHHHHHHHCCCEEEecC-------CCEEEEEeecC
Confidence 33667777777777776 777765543345566554 3456789999999999886222 26799999988
Q ss_pred CCHHHHHHHHHHHHHHHHHhC
Q 040324 448 HTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 448 ~t~edid~~l~~l~~~~~~~~ 468 (488)
+|++|+ +++++|+++++.+.
T Consensus 335 ~t~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 335 HHDDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp CTTCCC-CHHHHHHHHHTCCC
T ss_pred CCHHHH-HHHHHHHHHHHhhc
Confidence 999999 99999999987663
No 224
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.89 E-value=9.6e-22 Score=205.63 Aligned_cols=334 Identities=12% Similarity=0.073 Sum_probs=210.8
Q ss_pred eEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcccCCCChhhHHHHHHHHHHHh-------CC----CCeEEeCCc
Q 040324 102 CLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV-------GK----PAAIVFGMG 170 (488)
Q Consensus 102 ~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-------g~----~~~i~~~sG 170 (488)
++||+.+.+ ++ .++.+.+++.+++.. ..|..+ .|. .++++.+++.+ +. ++.+++++|
T Consensus 106 ~i~l~~g~~-~~--~~~~~~~al~~~~~~--~~Y~~~---~g~----~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G 173 (546)
T 2zy4_A 106 SLSYVRDQL-GL--DPAAFLHEMVDGILG--CNYPVP---PRM----LNISEKIVRQYIIREMGADAIPSESVNLFAVEG 173 (546)
T ss_dssp HHHHHHHTS-CC--CHHHHHHHHHHHHHT--CSCCSS---SSC----CHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEH
T ss_pred hhecccCCC-CC--CChHHHHHHHHhhhc--CCCCCC---cCC----HHHHHHHHHHHHHHhccCCCCCCCcceEEEECC
Confidence 677764432 33 345667777766632 223211 133 35555555433 11 245666666
Q ss_pred HHH-Hhhhhhc-----ccCCCcEEEEeCCCchHHHHHHHhc--CCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCC
Q 040324 171 YVT-NSSILPV-----LMGKGSLIISDSLNHNSIVNGARGS--GATIRVFQHN-------TPSHLEEVLREQIAEGQPRT 235 (488)
Q Consensus 171 s~a-~~~~~~~-----~~~~~~~Vl~~~~~h~~~~~~~~~~--g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~ 235 (488)
+.. +..++.+ ++++||.|+++.|+|+.+...+.+. |.+++.++.+ |+++|++.+..
T Consensus 174 ~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~--------- 244 (546)
T 2zy4_A 174 GTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP--------- 244 (546)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST---------
T ss_pred HHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC---------
Confidence 554 4555554 5789999999999999998876654 5777777742 66776654321
Q ss_pred CCCCceEEEEEcCcCCCCCCCCC---hHHHHHHH--HHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccc
Q 040324 236 RRPWKKIMVVVEGIYSMEGELCK---LPEIITIC--KRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS 310 (488)
Q Consensus 236 ~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~--~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~s 310 (488)
..++++++ ...+++|.+.+ +++|+++| +++|++||+||+|+ .+........+. . .+.+|++.|||
T Consensus 245 ---~~k~v~l~-~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~--~~~~~~~s~~~~---~-~~~~i~~~S~S 314 (546)
T 2zy4_A 245 ---AIKIFFCV-NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG--TFADDFQSLFAI---C-PENTLLVYSFS 314 (546)
T ss_dssp ---TEEEEEEE-SSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG--GGSTTCCCHHHH---C-GGGEEEEEEST
T ss_pred ---CCeEEEEE-CCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcch--hhcccCcCHHHh---C-CCCEEEEEeCc
Confidence 24555555 77899998876 77788998 78999999999999 554332223222 1 24678999999
Q ss_pred cccCCcc---cEEEeCHH-HHHHHHhh-------------CC---------------------CCcccCCCCHHHHHH-H
Q 040324 311 KSFGSYG---GYIAGSKE-LIQYLKYN-------------CP---------------------AHLYATSISPPAAEQ-I 351 (488)
Q Consensus 311 K~~g~~G---g~i~~~~~-~~~~~~~~-------------~~---------------------~~~~~~~~~p~~~aa-~ 351 (488)
|.+|.+| ||++++++ +++.+... .. ....+.+.+.+...+ +
T Consensus 315 K~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a 394 (546)
T 2zy4_A 315 KYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMA 394 (546)
T ss_dssp TTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHH
T ss_pred cccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHH
Confidence 9999888 99998875 77766321 00 001122345554433 2
Q ss_pred HHHH-HHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCCc-----------------chHHH
Q 040324 352 ISAI-QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNP-----------------AKVSS 413 (488)
Q Consensus 352 ~a~L-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 413 (488)
+.++ ..+.+ ...+.++.++.++++.+.+.+.|. .++.+..+.++.++++.+... .....
T Consensus 395 ~~a~~all~~--~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~ 471 (546)
T 2zy4_A 395 LFSLFALMDE--ADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDM 471 (546)
T ss_dssp HHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHH
Confidence 2122 23321 233566778888888888888885 555544555566667765321 11223
Q ss_pred HHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCCccC
Q 040324 414 FSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGIKYF 472 (488)
Q Consensus 414 ~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~~~~ 472 (488)
+.+.|.++||.+.|... +.. +++++||++. ..+++++++++++|+++++++..++.
T Consensus 472 l~~ll~~~gV~v~pG~~-F~~-~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~~~~ 527 (546)
T 2zy4_A 472 LFRIADETGIVLLPGRG-FGS-NRPSGRASLA-NLNEYEYAAIGRALRKMADELYAEYS 527 (546)
T ss_dssp HHHHHHHHSCCCEESSC-TTC-SSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCEEEeCccc-cCC-CCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777999998332 221 3578999995 56899999999999999887755543
No 225
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.88 E-value=4e-21 Score=204.00 Aligned_cols=298 Identities=15% Similarity=0.142 Sum_probs=211.1
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcH-HHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGY-VTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN------- 215 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs-~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------- 215 (488)
....+.++++.+|+++|.++++++++|+ .+|..++.+++++||.|+++.++|.++..++.++|++++.++..
T Consensus 193 ~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~ 272 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGIL 272 (715)
T ss_dssp TBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCB
T ss_pred CcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEeccccccccc
Confidence 3445689999999999999999999995 78888999999999999999999999999999999999888632
Q ss_pred --------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccc-cCC
Q 040324 216 --------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGA-VGK 286 (488)
Q Consensus 216 --------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~-~g~ 286 (488)
|++++++++++. |++.+ .+++|++.+ ++.|.+.++++|.++|++++ +++||+|+.+. +++
T Consensus 273 ~~i~~~~~d~e~Le~~l~~~-----~~~k~--p~~vivt~p--n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~ 341 (715)
T 3n75_A 273 GGIPQSEFQHATIAKRVKET-----PNATW--PVHAVITNS--TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSP 341 (715)
T ss_dssp CCCCGGGGSHHHHHHHHHHS-----TTCCS--CSEEEEESS--CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSG
T ss_pred cCcccccCCHHHHHHHHhhC-----cCccC--ceEEEEECC--CCCCccCCHHHHHHHhCcCc--EEEccccccccccCC
Confidence 789999999863 11111 136777777 78899999999999998774 79999998543 443
Q ss_pred CCCCcchhcCCCC-CCccEE---EcccccccCC--cccEEEeCHHHH-HHHHhhCCCCcccCCCCHHHHHHHHHHHHHHh
Q 040324 287 TGRGVCELLGVDT-SDVDIM---MGTFSKSFGS--YGGYIAGSKELI-QYLKYNCPAHLYATSISPPAAEQIISAIQVVI 359 (488)
Q Consensus 287 ~g~~~~~~~~v~p-~~~di~---~~t~sK~~g~--~Gg~i~~~~~~~-~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~ 359 (488)
.+.+.. .+.. .+.|++ +.|++|++++ .||++..+.++. +.+... ....++++.+++.+++..++++.+.
T Consensus 342 ~~~~~~---al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~-~~~~~STSpsy~~~AsldaA~~~~~ 417 (715)
T 3n75_A 342 IYEGKC---GMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEA-YMMHTTTSPHYGIVASTETAAAMMK 417 (715)
T ss_dssp GGTTSS---TTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHH-HHHTSCSSCCHHHHHHHHHHHHHHS
T ss_pred cccccc---ccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHH-HHhhcCCCchHHHHHHHHHHHHHHH
Confidence 322111 1111 113444 8999999987 358887754421 122211 1123456788999999888998873
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHhCC-------CeecCCCC-----------------------C-----C-eEEE
Q 040324 360 GEDGSCRGAQKLARIRENSNFFRSKLQKMG-------FEVLGDND-----------------------S-----P-VMPI 403 (488)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-------~~~~~~~~-----------------------~-----~-~~~~ 403 (488)
+ ...+++++++.++.++|+++|+++. +.+..+.. . | -+.+
T Consensus 418 ~----~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i 493 (715)
T 3n75_A 418 G----NAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTL 493 (715)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEE
T ss_pred h----hccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEE
Confidence 1 1356788999999999999998762 33332210 0 0 1112
Q ss_pred EeCC----------cchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 404 MVYN----------PAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 404 ~~~~----------~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
.... ......+.+.|.++||.+.-.. .+.+-+.++...|++++++++++|.++-+.+
T Consensus 494 ~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d-------~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~ 560 (715)
T 3n75_A 494 LTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG-------PYNLLFLFSIGIDKTKALSLLRALTDFKRAF 560 (715)
T ss_dssp ECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE-------TTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC-------CCcEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2211 1234577888888899886422 2567777788999999999999998876543
No 226
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.87 E-value=2.5e-20 Score=201.18 Aligned_cols=305 Identities=15% Similarity=0.118 Sum_probs=212.9
Q ss_pred ChhhHHHHHHHHHHHhCCCCeEEeCCcH-HHHhhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeCC-------
Q 040324 144 TLALHNELEECVARFVGKPAAIVFGMGY-VTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHN------- 215 (488)
Q Consensus 144 ~~~~~~~l~~~la~~~g~~~~i~~~sGs-~a~~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~------- 215 (488)
......++++.+++++|.++.+++++|+ ++|..++.+++++||.|+++.++|.++..++..+|++++.++..
T Consensus 203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~ 282 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGII 282 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCB
T ss_pred CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCccccc
Confidence 4456689999999999998888888886 56788899999999999999999999999999999999887632
Q ss_pred --------CHHHHHHHHHHHHhcCCCCC---CCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEcccccc-c
Q 040324 216 --------TPSHLEEVLREQIAEGQPRT---RRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIG-A 283 (488)
Q Consensus 216 --------d~~~Le~~l~~~~~~~~p~~---~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g-~ 283 (488)
|+++|++++++. |++ ++++.++++++.+ +..|.+.++++|.++|++||++|++||+|+.+ .
T Consensus 283 g~i~~~~~d~e~le~~i~~~-----~~~k~~~~~~~klvil~~p--n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~ 355 (755)
T 2vyc_A 283 GPIYPQEMQPETLQKKISES-----PLTKDKAGQKPSYCVVTNC--TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_dssp CCCCGGGGSHHHHHHHHHHC-----TTTGGGTTCCCSCEEEESS--CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGG
T ss_pred cccCcCCCCHHHHHHHHHhC-----ccccccccCCCeEEEEECC--CCCceecCHHHHHHHHHHcCCEEEEECcCchhcc
Confidence 789999988752 111 1122346666665 35799999999999999999999999999742 2
Q ss_pred cCCCCCCcchhcC--CC-CCCccEEEcccccccCCc--ccEEEeCHH--HH--HHHHhhCCCCcccCCCCHHHHHHHHHH
Q 040324 284 VGKTGRGVCELLG--VD-TSDVDIMMGTFSKSFGSY--GGYIAGSKE--LI--QYLKYNCPAHLYATSISPPAAEQIISA 354 (488)
Q Consensus 284 ~g~~g~~~~~~~~--v~-p~~~di~~~t~sK~~g~~--Gg~i~~~~~--~~--~~~~~~~~~~~~~~~~~p~~~aa~~a~ 354 (488)
++..+++.....+ .+ .++.++++.|++|++++. ||++..+++ .+ ..+..... ...+++.+.+.+++..++
T Consensus 356 ~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~-~~~s~sp~~~~iaal~aA 434 (755)
T 2vyc_A 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYM-MHATTSPLYAICASNDVA 434 (755)
T ss_dssp GCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHH-HTSCSSCCHHHHHHHHHH
T ss_pred cCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Confidence 3322111111123 22 133456889999999763 477765433 11 12221111 012344677777777788
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-C---------CeecCCC----------------------------
Q 040324 355 IQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-G---------FEVLGDN---------------------------- 396 (488)
Q Consensus 355 L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g---------~~~~~~~---------------------------- 396 (488)
++.+.. +..++..+++.++.++++++|+++ | +.+..+.
T Consensus 435 ~~~l~~----~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (755)
T 2vyc_A 435 VSMMDG----NSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCW 510 (755)
T ss_dssp HHHHST----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGT
T ss_pred HHHHHh----hhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhh
Confidence 887732 125678889999999999999875 4 4443321
Q ss_pred ---------------CC------CeEEEEeCC----------cchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeec
Q 040324 397 ---------------DS------PVMPIMVYN----------PAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICIS 445 (488)
Q Consensus 397 ---------------~~------~~~~~~~~~----------~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~ 445 (488)
.+ ..+.+.+.. ......+.+.|.++||.+... +.+.+|++++
T Consensus 511 ~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~-------~~~~v~~~~~ 583 (755)
T 2vyc_A 511 VMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT-------TDFQIMFLFS 583 (755)
T ss_dssp BCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE-------CSSEEEEECC
T ss_pred ccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec-------CCCeEEEEEC
Confidence 11 123333321 123467888888889887532 2478999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q 040324 446 ASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 446 ~~~t~edid~~l~~l~~~~~~~ 467 (488)
...|++++++++++|.++.+.+
T Consensus 584 ~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 584 MGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp TTCCTTTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987655
No 227
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.87 E-value=1.7e-21 Score=196.01 Aligned_cols=279 Identities=14% Similarity=0.103 Sum_probs=191.2
Q ss_pred HHHHHHHHHHhCC-------CCeEEeCCcHH-HHhhhhhcccCCCc----EEEEeCCCchHHHHHHHhcCCeEEEeeCCC
Q 040324 149 NELEECVARFVGK-------PAAIVFGMGYV-TNSSILPVLMGKGS----LIISDSLNHNSIVNGARGSGATIRVFQHNT 216 (488)
Q Consensus 149 ~~l~~~la~~~g~-------~~~i~~~sGs~-a~~~~~~~~~~~~~----~Vl~~~~~h~~~~~~~~~~g~~v~~~~~~d 216 (488)
.+|++.+|++++. ++.+++++|+. ++..++.++..+|| .|+++.|+|+.+...++..|++++.++.+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d- 149 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGD- 149 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEE-
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCC-
Confidence 8999999999872 34677776665 55777888888999 99999999999999999999888877753
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcC--cEEEEEccccccccCCCCCCcchh
Q 040324 217 PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK--AYTYLDEAHSIGAVGKTGRGVCEL 294 (488)
Q Consensus 217 ~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g--~~li~DE~~s~g~~g~~g~~~~~~ 294 (488)
.+.++ . +..++ |++....+++|.+.+ +|++ ++|+ +++|+||+|.. +. ....
T Consensus 150 ~~~l~----~-----------~~~k~-v~l~~p~NPtG~~~~--~l~~--~~~~~~~~ii~De~y~~---~~-~~~l--- 202 (391)
T 3bwn_A 150 AWGFD----K-----------KGPYI-ELVTSPNNPDGTIRE--TVVN--RPDDDEAKVIHDFAYYW---PH-YTPI--- 202 (391)
T ss_dssp STTCC----C-----------CSCEE-EEEESSCTTTCCCCC--CCC-------CCCEEEEECTTCS---TT-TSCC---
T ss_pred HHHcC----C-----------CCCEE-EEECCCCCCCchhHH--HHHH--HhhcCCCEEEEeCCCCC---CC-CCcc---
Confidence 22222 0 12444 445677888998774 4444 2255 99999999972 21 1111
Q ss_pred cCCCCCCccEEEcccccccCCcc---cEEEe-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhcc-----CCCc
Q 040324 295 LGVDTSDVDIMMGTFSKSFGSYG---GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGE-----DGSC 365 (488)
Q Consensus 295 ~~v~p~~~di~~~t~sK~~g~~G---g~i~~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~-----~~~~ 365 (488)
.. ..+.+|+++||||.+|.+| ||+++ ++++++.+........ .+.+++.+.++.++|+.-... ...+
T Consensus 203 -~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~--~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 278 (391)
T 3bwn_A 203 -TR-RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNS--IGVSKESQVRTAKILNVLKETCKSESESEN 278 (391)
T ss_dssp -CC-CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHTTCCCTTTS
T ss_pred -cc-CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccc--cCCCHHHHHHHHHHHhCcchhccccccHHH
Confidence 11 2346899999999999888 99987 8999888876443212 336777777777777642100 0133
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CCeecCC-------------CCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCC
Q 040324 366 RGAQKLARIRENSNFFRSKLQKM-GFEVLGD-------------NDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFP 431 (488)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~ 431 (488)
+.++.+++++++.+++.+.|++. ++.+..+ .++.++++.+... ..+.+.|.++||.+.+...
T Consensus 279 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~---~~~~~~l~~~gV~v~pg~~- 354 (391)
T 3bwn_A 279 FFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE---TDLVSELRRHKVMSRAGER- 354 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS---CCHHHHHHHTTEECEEGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH---HHHHHHHHHCCEEEccCCC-
Confidence 67788999999999999999987 5555432 2233567766532 2455667788999997332
Q ss_pred CccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 432 ATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 432 ~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
+.. +.+++||++. .+++++++++++|++++++
T Consensus 355 fg~-~~~~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 355 CGS-DKKHVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp GTC-CTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred CCC-CCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 111 3579999985 4899999999999887654
No 228
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.84 E-value=3e-20 Score=188.95 Aligned_cols=279 Identities=15% Similarity=0.106 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHhC------C-CCeEEeCCc-HHHHhhhhhcc--------cCCCcEEEEeCCCchHHHHHHHhcCCeEEE
Q 040324 148 HNELEECVARFVG------K-PAAIVFGMG-YVTNSSILPVL--------MGKGSLIISDSLNHNSIVNGARGSGATIRV 211 (488)
Q Consensus 148 ~~~l~~~la~~~g------~-~~~i~~~sG-s~a~~~~~~~~--------~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~ 211 (488)
..+|++.+|++++ . ++.+++++| ++++..++.++ .++||.|+++.|+|+.+...++..|.+++.
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~ 181 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV 181 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeee
Confidence 4789999999985 2 345555555 44667788888 889999999999999999999999988776
Q ss_pred eeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCc
Q 040324 212 FQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGV 291 (488)
Q Consensus 212 ~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~ 291 (488)
+.. |+++|++.+.+ ..++++ +....+++|.+.+ + +++ ++..+.|+++- . . ....
T Consensus 182 ~~~-d~~~l~~~~~~------------~~k~v~-l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~--~--~-~~s~ 235 (427)
T 2hox_A 182 WAG-NAANYVNVSNP------------EQYIEM-VTSPNNPEGLLRH-A----VIK--GCKSIYDMVYY--W--P-HYTP 235 (427)
T ss_dssp EEE-EGGGGTTCSCG------------GGEEEE-EESSCTTTCCCCC-C----SST--TCEEEEECTTC--S--T-TTSC
T ss_pred ecC-CHHHHHHhhcC------------CceEEE-EcCCCCCcccccH-H----HHc--CCCEEEeeccc--C--C-CCCc
Confidence 543 67777765543 145444 4477888998887 3 233 56788888874 1 1 1111
Q ss_pred chhcCCCCCCccEEEcccccccCCcc---cEEEe-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhcc------
Q 040324 292 CELLGVDTSDVDIMMGTFSKSFGSYG---GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGE------ 361 (488)
Q Consensus 292 ~~~~~v~p~~~di~~~t~sK~~g~~G---g~i~~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~------ 361 (488)
..+. .+.+|+++||||.+|.+| ||+++ ++++++.+........ .+.+++.+.++.++|+.....
T Consensus 236 ---~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~--~~~~~~~q~a~~~~L~~~~~~l~~~~~ 309 (427)
T 2hox_A 236 ---IKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNT--EGTPRETQLRSLKVLKEVVAMVKTQKG 309 (427)
T ss_dssp ---CCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---cccC-CCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhhcchhhhccccc
Confidence 1222 456899999999999877 99999 5899888876543212 236677666666666542100
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhC-CCee--c------------CCCCCCeEEEEeCCcchHHHHHHHHH-HCCceE
Q 040324 362 DGSCRGAQKLARIRENSNFFRSKLQKM-GFEV--L------------GDNDSPVMPIMVYNPAKVSSFSRECL-KQNVAI 425 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v 425 (488)
...+..++.+++++++.+++.+.|++. |+.+ . .+.++.++++.+.. ...++++.|+ ++||.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--~~~~~~~~ll~~~gI~v 387 (427)
T 2hox_A 310 TMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--EEDKDCYQTFQNGRINT 387 (427)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--GGGCSHHHHHHHTTEEC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--cHHHHHHHHHHHCCEEE
Confidence 122355677888999999999999987 6554 1 23346777777754 2346777776 679999
Q ss_pred Eee-cCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHH
Q 040324 426 VTV-GFPATPLLLARARICISASHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 426 ~~~-~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~ 465 (488)
.+. .|+. +.+++|+++. .+++++++++++|.++++
T Consensus 388 ~pg~~f~~---~~~~~Ris~~--~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 388 QNGVGFEA---SSRYVRLSLI--KTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp EEGGGGTS---CTTEEEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred cCCCccCC---CCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 973 3322 4579999985 489999999999998864
No 229
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.84 E-value=1.8e-19 Score=184.05 Aligned_cols=286 Identities=16% Similarity=0.118 Sum_probs=181.8
Q ss_pred CChhhHHHHHHHHHHHhCCCCe--EEeCCcHHHHhhhhhc-ccCCCcEEEEeCCCchHHHHHH----HhcCCeEEEeeCC
Q 040324 143 GTLALHNELEECVARFVGKPAA--IVFGMGYVTNSSILPV-LMGKGSLIISDSLNHNSIVNGA----RGSGATIRVFQHN 215 (488)
Q Consensus 143 g~~~~~~~l~~~la~~~g~~~~--i~~~sGs~a~~~~~~~-~~~~~~~Vl~~~~~h~~~~~~~----~~~g~~v~~~~~~ 215 (488)
|..+...++++.+++++|.+.. +++++|+.++..+..+ ..++++.|+++.+.|+++...+ +..|++++.++..
T Consensus 105 g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~ 184 (438)
T 1wyu_A 105 GVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE 184 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred hHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc
Confidence 5566778999999999998632 4444444232222222 2478999999999999998665 3479999888742
Q ss_pred C-HHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEcc-ccccccCCCCCCcch
Q 040324 216 T-PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEA-HSIGAVGKTGRGVCE 293 (488)
Q Consensus 216 d-~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~-~s~g~~g~~g~~~~~ 293 (488)
+ .-++++ +. +.++ +|++... ++.|.+.++++|.++|+++|+++|+|.. ++.|.+... .
T Consensus 185 ~~~~d~~~-i~------------~~t~-~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-----~ 244 (438)
T 1wyu_A 185 GGRTPLPE-VG------------EEVG-AVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-----G 244 (438)
T ss_dssp TTBCCCCC-CC------------TTEE-EEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-----H
T ss_pred CCccCHHH-hC------------CCeE-EEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-----c
Confidence 1 111121 21 1244 4444445 8899999999999999999999997743 544444321 1
Q ss_pred hcCCCCCCccEEEccccccc------CCcc-cEEEeCHHHHHHHHhhCC----------CCc-------------ccC-C
Q 040324 294 LLGVDTSDVDIMMGTFSKSF------GSYG-GYIAGSKELIQYLKYNCP----------AHL-------------YAT-S 342 (488)
Q Consensus 294 ~~~v~p~~~di~~~t~sK~~------g~~G-g~i~~~~~~~~~~~~~~~----------~~~-------------~~~-~ 342 (488)
.++ .|++++| +|.| +++| |++++++++++.+..... .+. .++ +
T Consensus 245 ~~g-----~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~ 318 (438)
T 1wyu_A 245 AYG-----ADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSN 318 (438)
T ss_dssp HHT-----CSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCC
T ss_pred cCC-----CCEEEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCC
Confidence 222 3788777 6643 3344 899999887665421100 000 011 1
Q ss_pred C---CHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCC-CeEEEEeCCcchHHHHHHH
Q 040324 343 I---SPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDS-PVMPIMVYNPAKVSSFSRE 417 (488)
Q Consensus 343 ~---~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 417 (488)
. +...+.++...+..+.. +..++..++..++++++.+.|+++ |+++..+... ..+.+.. +....++.++
T Consensus 319 ~~~~~~~~a~~aa~~l~~~~~----~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 392 (438)
T 1wyu_A 319 ITTNAQLTALMGAMYLAALGP----EGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALAL--PKDPEAVRRA 392 (438)
T ss_dssp CCSCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEEC--SSCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeC--CCCHHHHHHH
Confidence 1 22222222122444311 135678888999999999999998 8988764211 2222322 2356789999
Q ss_pred HHHCCceE--EeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 418 CLKQNVAI--VTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 418 l~~~Gi~v--~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
|.++||.+ .+..+ ...+.+||+++..+|++|+++++++|++++
T Consensus 393 L~~~gi~v~~~~~~~----~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 393 LAERGFHGATPVPRE----YGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp HHHTTCCCCEECCTT----SCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHCCceeccccccc----cCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 99999998 43211 114789999988899999999999998763
No 230
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.83 E-value=9.4e-19 Score=176.46 Aligned_cols=289 Identities=12% Similarity=0.061 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHh-CCC----C--eEEeCCcHHHH----hhhhhcccCCCcEEEEeCCCchHHHHHHHhcCCe-EEEeeCC
Q 040324 148 HNELEECVARFV-GKP----A--AIVFGMGYVTN----SSILPVLMGKGSLIISDSLNHNSIVNGARGSGAT-IRVFQHN 215 (488)
Q Consensus 148 ~~~l~~~la~~~-g~~----~--~i~~~sGs~a~----~~~~~~~~~~~~~Vl~~~~~h~~~~~~~~~~g~~-v~~~~~~ 215 (488)
..+|++.+++++ |.. . .+...+|+.+. ..+.+.+.++||.|++++|+|+++...++..|.+ +..++..
T Consensus 89 ~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~ 168 (420)
T 4h51_A 89 YQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYY 168 (420)
T ss_dssp CHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECE
T ss_pred hHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccc
Confidence 378999999875 321 2 23344566654 2345566789999999999999999999999986 4444422
Q ss_pred -------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC---hHHHHHHHHHcCcEEEEEccccccccC
Q 040324 216 -------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK---LPEIITICKRYKAYTYLDEAHSIGAVG 285 (488)
Q Consensus 216 -------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~---l~~l~~l~~~~g~~li~DE~~s~g~~g 285 (488)
|.+.+.+.+... +.+..+++.....+++|.... +++|.++|+++++++|+||+|. +|.
T Consensus 169 ~~~~~~~d~~~~~~~l~~~----------~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~--~~~ 236 (420)
T 4h51_A 169 DPKTVSLNFEGMKKDILAA----------PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQ--GYA 236 (420)
T ss_dssp EGGGTEECHHHHHHHHHHS----------CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT--TTT
T ss_pred cccccCCCHHHHHHHHhcc----------CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhh--hhc
Confidence 667777766642 224566777788899998774 8899999999999999999998 665
Q ss_pred CCCCC--cch-hcCCCCCCccEEEcccccccCCcc---cEEEeCHHHHH-------HHHhhCCCCcccCCCCHHHHHHHH
Q 040324 286 KTGRG--VCE-LLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQ-------YLKYNCPAHLYATSISPPAAEQII 352 (488)
Q Consensus 286 ~~g~~--~~~-~~~v~p~~~di~~~t~sK~~g~~G---g~i~~~~~~~~-------~~~~~~~~~~~~~~~~p~~~aa~~ 352 (488)
..+.. ... ....+..+.-+++.||||.|+..| ||+++..+..+ .+...... +++ +.+...+.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~-~~s-~~p~~~a~~~~ 314 (420)
T 4h51_A 237 SGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIRE-EYT-CPPAHGARLAH 314 (420)
T ss_dssp TSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHT-TTS-SCCHHHHHHHH
T ss_pred cCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhc-ccC-cchHHHHHHHH
Confidence 43211 110 000111223577899999999988 98876533222 22211111 122 12333333332
Q ss_pred HHHHH--HhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCe----ecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEE
Q 040324 353 SAIQV--VIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFE----VLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIV 426 (488)
Q Consensus 353 a~L~~--i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 426 (488)
..+.- +.. ...++.+..+++++++++.|.+.|++.|.+ .+.+..+.+.+ +... .+.++.|.++||+++
T Consensus 315 ~~l~d~~l~~-~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~--~gls---~e~v~~L~e~~Vy~~ 388 (420)
T 4h51_A 315 LILSNNELRK-EWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF--LGLS---KAQCEYCQNHNIFIT 388 (420)
T ss_dssp HHHHSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE--CCCC---HHHHHHHHHTTEECC
T ss_pred HHhcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe--cCcC---HHHHHHHHhCCEEEc
Confidence 23220 000 001145667888899999999999998643 23334444322 2221 245677888899887
Q ss_pred eecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhC
Q 040324 427 TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468 (488)
Q Consensus 427 ~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~ 468 (488)
+ . -||++. ..++++|++++++|.++++++.
T Consensus 389 ~----~-------gRis~A-gl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 389 V----S-------GRANMA-GLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp T----T-------CEEEGG-GCCHHHHHHHHHHHHHHHC---
T ss_pred C----C-------CEEEec-cCCHHHHHHHHHHHHHHHHHhh
Confidence 3 1 289884 5799999999999999998875
No 231
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=180.49 Aligned_cols=328 Identities=17% Similarity=0.131 Sum_probs=205.8
Q ss_pred EEeccccccCCCCCCccchHHHHHHHHHcCCCCCC----cccCCCChhhHHHHHHHHHHHhCCCC---eEEe-CCcHHHH
Q 040324 103 LNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCS----SRVDGGTLALHNELEECVARFVGKPA---AIVF-GMGYVTN 174 (488)
Q Consensus 103 ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~----~~~~~g~~~~~~~l~~~la~~~g~~~---~i~~-~sGs~a~ 174 (488)
+|++.-|....+.-+++|.+++.+.+.++.....+ +....-.....++.++.++++++.++ ++|+ ++||+++
T Consensus 11 ~~~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~ 90 (377)
T 3e77_A 11 VDLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQF 90 (377)
T ss_dssp ----CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred cCcccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHH
Confidence 45544444455556788888888877654322111 11001124566899999999999852 4554 4678888
Q ss_pred hhhhhcccCC--CcEEEEeCCCchHHHH--HHHhcCCeEEEeeCC-----CHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q 040324 175 SSILPVLMGK--GSLIISDSLNHNSIVN--GARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVV 245 (488)
Q Consensus 175 ~~~~~~~~~~--~~~Vl~~~~~h~~~~~--~~~~~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi 245 (488)
..++..+..+ ||.|+.-...|.+... .++..|..+..++.+ ++++++..++ +.++ +|.
T Consensus 91 n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~------------~~t~-lV~ 157 (377)
T 3e77_A 91 SAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLN------------PDAS-YVY 157 (377)
T ss_dssp HHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCC------------TTCS-CEE
T ss_pred HHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccC------------CCcc-EEE
Confidence 7777766644 7887766555554322 233346555554432 3343332221 1233 334
Q ss_pred EcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cEEEeCH
Q 040324 246 VEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYIAGSK 324 (488)
Q Consensus 246 ~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i~~~~ 324 (488)
+...-+..|.+.|+ +|+++|+++++|.+|++|... ++.++.+++..|..|.+|..| |+++.++
T Consensus 158 ~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~-----------id~~~~~~~~~s~~K~~gp~G~g~l~~~~ 221 (377)
T 3e77_A 158 YCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKP-----------VDVSKFGVIFAGAQKNVGSAGVTVVIVRD 221 (377)
T ss_dssp EESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSC-----------CCGGGCSEEEEEGGGTTSCTTCEEEEEET
T ss_pred EeCccCchheEchh-----hhccCCCEEEEEcccccCCCC-----------CchhhcCEEEEecccccCCCccEEEEEcH
Confidence 43444456888887 478999999999999966553 222334567789999999888 8888776
Q ss_pred HHHHHHH-----------hhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 040324 325 ELIQYLK-----------YNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEV 392 (488)
Q Consensus 325 ~~~~~~~-----------~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 392 (488)
++.+.+. .......++ +.+.....+..++|+.+... ...+.+.++.+++.++++++|+++ |+.+
T Consensus 222 ~~l~~~~~~~p~~~~~~~~~~~~~~~~-Tp~v~~i~~l~~al~~l~~~---GG~~~i~~~~~~l~~~l~~~L~~~~g~~~ 297 (377)
T 3e77_A 222 DLLGFALRECPSVLEYKVQAGNSSLYN-TPPCFSIYVMGLVLEWIKNN---GGAAAMEKLSSIKSQTIYEIIDNSQGFYV 297 (377)
T ss_dssp TSCSCCCTTSCGGGCHHHHHTTTTCSS-CCCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTSTTSEE
T ss_pred HHHhhccCCCCchhhHHHHhhcCCCCC-CchHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 6532211 111111222 35566667777888887431 035778889999999999999998 7765
Q ss_pred cCC---CCCC-eEEEEeCCc---chH-HHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHH
Q 040324 393 LGD---NDSP-VMPIMVYNP---AKV-SSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464 (488)
Q Consensus 393 ~~~---~~~~-~~~~~~~~~---~~~-~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~ 464 (488)
... ..++ ++.+.+... ... ..+.+.|.++||.+.+ ++.. .+.+|+++...+|+||||+++++|+++.
T Consensus 298 ~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~-g~~~----~g~iRiS~~~~~t~edId~l~~al~~~~ 372 (377)
T 3e77_A 298 CPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLK-GHRS----VGGIRASLYNAVTIEDVQKLAAFMKKFL 372 (377)
T ss_dssp CCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCB-CCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeC-CCCc----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 321 1344 466666541 222 4678888889998864 3221 2459999999999999999999999998
Q ss_pred HHhC
Q 040324 465 DLVG 468 (488)
Q Consensus 465 ~~~~ 468 (488)
++.+
T Consensus 373 ~~~~ 376 (377)
T 3e77_A 373 EMHQ 376 (377)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 7754
No 232
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.80 E-value=5.3e-18 Score=167.53 Aligned_cols=320 Identities=13% Similarity=0.098 Sum_probs=204.3
Q ss_pred ceeEEeccccccCCCCCCccchHHHHHHHHHcCCCCCCcc--cCCC--ChhhHHHHHHHHHHHhCCC---CeEE-eCCcH
Q 040324 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSR--VDGG--TLALHNELEECVARFVGKP---AAIV-FGMGY 171 (488)
Q Consensus 100 ~~~ld~~s~~~lg~~~~~~~v~~a~~~~l~~~~~~~~~~~--~~~g--~~~~~~~l~~~la~~~g~~---~~i~-~~sGs 171 (488)
++.++|+ -|...-+++|.+++.+.+.++.....+.. ...+ .....++.++.++++++.+ +++| .++||
T Consensus 4 ~~~~~f~----pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T 79 (361)
T 3m5u_A 4 MRKINFS----AGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGAS 79 (361)
T ss_dssp CCCEECC----SSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred cceEeec----CCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHH
Confidence 4566776 45555578888888877654322211100 0111 2356789999999999984 3455 45677
Q ss_pred HHHhhhhhcccCCCcEE-EEeCCCchH-HHHHHHhcCCeEEEeeCC-------CHHHHHHHHHHHHhcCCCCCCCCCceE
Q 040324 172 VTNSSILPVLMGKGSLI-ISDSLNHNS-IVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTRRPWKKI 242 (488)
Q Consensus 172 ~a~~~~~~~~~~~~~~V-l~~~~~h~~-~~~~~~~~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~p~~~~~~~~~ 242 (488)
+++..++..+. +++.+ .+....|.. ....++..|.++..++.+ +++. + |++ .++
T Consensus 80 ~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~------------~t~- 142 (361)
T 3m5u_A 80 LQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSD------------NAD- 142 (361)
T ss_dssp HHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCT------------TSS-
T ss_pred HHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCC------------CCC-
Confidence 78776666666 56633 222222222 122344457888777643 2222 1 221 234
Q ss_pred EEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cEEE
Q 040324 243 MVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYIA 321 (488)
Q Consensus 243 ~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i~ 321 (488)
+|.+...-+..|.+.|. +++ +|+++++|.+|++|... ++.++.|+++.|..|.+|..| |+++
T Consensus 143 lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~-----------id~~~~d~~~~s~~K~~gp~G~g~l~ 205 (361)
T 3m5u_A 143 YAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRK-----------VDFSNIALFYGGVQKNAGISGLSCIF 205 (361)
T ss_dssp EEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSC-----------CCCTTEEEEEEETTTTSSCTTCEEEE
T ss_pred EEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCC-----------CCcccCCEEEEechhccCCCccEEEE
Confidence 34443444455776441 344 49999999999966543 333457999999999999888 9999
Q ss_pred eCHHHHHHHHh-hC-----------CCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCC
Q 040324 322 GSKELIQYLKY-NC-----------PAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG 389 (488)
Q Consensus 322 ~~~~~~~~~~~-~~-----------~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 389 (488)
.++++.+.+.. .. ....+ .+.+.....+..++|+.+... ...+++.++.+++.++++++|++++
T Consensus 206 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~Tp~v~~i~~l~~al~~l~~~---gG~~~i~~~~~~l~~~l~~~L~~~~ 281 (361)
T 3m5u_A 206 IRKDMLERSKNKQIPSMLNYLTHAENQSLF-NTPPTFAIYMFNLEMDWLLNQ---GGLDKVHEKNSQKATMLYECIDLSN 281 (361)
T ss_dssp EEHHHHHHHHTCCCCGGGCHHHHHHTTTCS-SCCCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHHHTST
T ss_pred EcHHHHhhhcCCCCCceeehHHHhhcCCCC-CCccHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99988876653 11 11122 235666667777889988531 0357788899999999999999986
Q ss_pred -C-eecCCC--CC-CeEEEEeCC-cchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHH
Q 040324 390 -F-EVLGDN--DS-PVMPIMVYN-PAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRI 463 (488)
Q Consensus 390 -~-~~~~~~--~~-~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~ 463 (488)
+ ....+. .+ .++.+.+.. .....++...|.++||.+.. ++.. .+.+|+++...+|++|||+++++|+++
T Consensus 282 g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~-g~~~----~g~iRiS~~~~~t~edId~l~~al~~~ 356 (361)
T 3m5u_A 282 GFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLK-GHRI----LGGIRASIYNALNLDQVKTLCEFMKEF 356 (361)
T ss_dssp TSEEESSCGGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCB-CCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeeeccCCHHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEec-CCCc----cCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 5 443322 23 366666654 22224788888889998764 2211 145999999999999999999999998
Q ss_pred HHH
Q 040324 464 GDL 466 (488)
Q Consensus 464 ~~~ 466 (488)
.++
T Consensus 357 ~~~ 359 (361)
T 3m5u_A 357 QGK 359 (361)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 233
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.78 E-value=3.1e-18 Score=170.74 Aligned_cols=317 Identities=12% Similarity=0.060 Sum_probs=192.7
Q ss_pred CCCCCCccchHHHHHHHHHcCCCCCC----cccCCCChhhHHHHHHHHHHHhCCCC---eEEe-CCcHHHHhhhhhcccC
Q 040324 112 GFAAADEYCTPRVIDSLKKYSHSTCS----SRVDGGTLALHNELEECVARFVGKPA---AIVF-GMGYVTNSSILPVLMG 183 (488)
Q Consensus 112 g~~~~~~~v~~a~~~~l~~~~~~~~~----~~~~~g~~~~~~~l~~~la~~~g~~~---~i~~-~sGs~a~~~~~~~~~~ 183 (488)
|...-+++|.+++.+.+.++....++ +....-.....++.++.++++++.++ ++|+ ++||+++..++..+..
T Consensus 34 gpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~ 113 (386)
T 3qm2_A 34 GPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLG 113 (386)
T ss_dssp SSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccC
Confidence 44444677777777766543221111 00011123556899999999999852 5553 6888898887777778
Q ss_pred CCcEEEEeCCCchHHH--HHHHhcCCeEEEeeCC--------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCC
Q 040324 184 KGSLIISDSLNHNSIV--NGARGSGATIRVFQHN--------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSME 253 (488)
Q Consensus 184 ~~~~Vl~~~~~h~~~~--~~~~~~g~~v~~~~~~--------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~ 253 (488)
+++.|+.-...|.+.. ..++..| .+..++.+ +++++++.+++ ++.+|.+...-+..
T Consensus 114 ~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~-------------~t~lV~~~h~et~t 179 (386)
T 3qm2_A 114 DKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSD-------------NAAYLHYCPNETID 179 (386)
T ss_dssp TCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCT-------------TCSCEEECSEETTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCC-------------CCcEEEEECCcCCc
Confidence 8887654433333322 2233446 67666543 23444433321 23345555555666
Q ss_pred CCC-CChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCCcc-cEEEeCHHHHHHHH
Q 040324 254 GEL-CKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-GYIAGSKELIQYLK 331 (488)
Q Consensus 254 G~~-~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~~G-g~i~~~~~~~~~~~ 331 (488)
|.+ .|+++|. +|+++++|.+|++|... .++ ++.|+++.|..|.+|..| |+++.++++.+.+.
T Consensus 180 G~~i~pi~~i~-----~g~~~~vDa~qs~g~~p---------idv--~~~~~~~~s~hK~lGP~G~g~l~v~~~~~~~~~ 243 (386)
T 3qm2_A 180 GIAIDETPDFG-----PEVVVTADFSSTILSAP---------LDV--SRYGVIYAGAQKNIGPAGLTLVIVREDLLGKAH 243 (386)
T ss_dssp TEECCCCCCCC-----TTCCEEEECTTTTTSSC---------CCG--GGCSEEEEETTTTTCCTTEEEEEEEGGGCSCCC
T ss_pred CEecCchhhhc-----CCCEEEEEcccccCCCC---------CCc--cccCEEEEecccccCCCccEEEEECHHHHhhhc
Confidence 885 7888885 89999999999966553 233 333566779999999878 88888876632111
Q ss_pred h-----------hCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCee-cCC--CC
Q 040324 332 Y-----------NCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEV-LGD--ND 397 (488)
Q Consensus 332 ~-----------~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~--~~ 397 (488)
. ...+..++ +.|.....+..++++.+... ...+++.++.+++.++++++|+++++.. ..+ ..
T Consensus 244 ~~~p~~~~~~~~~~~~~~~g-Tp~v~~i~~l~~Al~~~~~~---gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~r 319 (386)
T 3qm2_A 244 ESCPSILDYTVLNDNDSMFN-TPPTFAWYLSGLVFKWLKAQ---GGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANR 319 (386)
T ss_dssp TTSCGGGCHHHHHHC--------CCSHHHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGB
T ss_pred ccCCcHHHHHHHhhcCCCCC-CCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHc
Confidence 1 01111222 23444555666778877421 0256788889999999999999987622 111 12
Q ss_pred C-CeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHh
Q 040324 398 S-PVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467 (488)
Q Consensus 398 ~-~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~ 467 (488)
+ .++.+.+.......++...|.++||.+.. ++.. .+.+|+++...+|++|||+++++|+++.++.
T Consensus 320 s~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~-g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 320 SRMNVPFQLADNTLDKVFLEESFAAGLHALK-GHRV----VGGMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp CSSEEEEEESSGGGHHHHHHHHHHTTEECCB-CCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCccccHHHHHHHHHCCCEEeC-CCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3 36667676432236788888889998763 2221 1349999999999999999999999988763
No 234
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.74 E-value=2.3e-16 Score=155.27 Aligned_cols=321 Identities=14% Similarity=0.134 Sum_probs=194.1
Q ss_pred ccchHHHHHHH-HHcCCCCCCcccCCCChhhHHH---HH-HHHHHHhCCCC-----eEEeCCcHHHHhhhhhcccCCCcE
Q 040324 118 EYCTPRVIDSL-KKYSHSTCSSRVDGGTLALHNE---LE-ECVARFVGKPA-----AIVFGMGYVTNSSILPVLMGKGSL 187 (488)
Q Consensus 118 ~~v~~a~~~~l-~~~~~~~~~~~~~~g~~~~~~~---l~-~~la~~~g~~~-----~i~~~sGs~a~~~~~~~~~~~~~~ 187 (488)
|.+.+|.-..+ .+|..++.+.|++.|. +..++ |. ++..++++.+. .+-.-||+.||.++..++++|||.
T Consensus 68 ~aV~~a~gS~ltnKYaEGyPg~RyYgGc-e~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ 146 (490)
T 3ou5_A 68 RAALEALGSCLNNKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDR 146 (490)
T ss_dssp HHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCC
T ss_pred HHHHHHhcCcccccccCCCCCccccCCC-hHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCE
Confidence 44444444333 3466677777766554 33333 33 34556888874 467779999999999999999999
Q ss_pred EEEeCCCchHHHHH--------HHhcCCe--EEEeeCC------CHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-cCcC
Q 040324 188 IISDSLNHNSIVNG--------ARGSGAT--IRVFQHN------TPSHLEEVLREQIAEGQPRTRRPWKKIMVVV-EGIY 250 (488)
Q Consensus 188 Vl~~~~~h~~~~~~--------~~~~g~~--v~~~~~~------d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~-e~v~ 250 (488)
|+.-+..|+....- ...+|.- ...++.+ |.+.+++..++. +.+ +||+ .+.|
T Consensus 147 ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~-----------kPk-lIi~G~SaY 214 (490)
T 3ou5_A 147 IMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF-----------RPR-LIIAGTSAY 214 (490)
T ss_dssp EECBC----------------------------CBCEETTTTEECHHHHHHHHHHH-----------CCS-EEEECCSSC
T ss_pred EEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhc-----------CCC-eEEECCccC
Confidence 99887776654321 1222221 2222211 899999988874 134 4555 5666
Q ss_pred CCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCCcchhcCCCCCCccEEEcccccccCC-cccEEEeCH-----
Q 040324 251 SMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS-YGGYIAGSK----- 324 (488)
Q Consensus 251 s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~~~~~~~v~p~~~di~~~t~sK~~g~-~Gg~i~~~~----- 324 (488)
+.. .++++++++|++.|++|++|-+|-.|-.. .|.. ..- + +..|++.+|.+|+|.+ -||.|+.++
T Consensus 215 ~r~---id~~~~reIAd~vGA~Lm~DmAHiaGLVA-~g~~-psP--~--~~ADvVTtTTHKTLrGPrGG~Il~~~~~~~~ 285 (490)
T 3ou5_A 215 ARL---IDYARMREVCDEVKAHLLADMAHISGLVA-AKVI-PSP--F--KHADIVTTTTHKTLRGARSGLIFYRKGVKAV 285 (490)
T ss_dssp CSC---CCHHHHHHHHHHHTCEEEEECGGGHHHHH-TTSS-CCG--G--GTCSEEEEESSSTTCSCSCEEEEEECSEEEE
T ss_pred ccc---cCHHHHHHHHhhcccEEEechhhhhhhhc-cccc-CCc--c--ccceEEeccccccccCCCceEEEeccccccc
Confidence 543 58999999999999999999999755442 1211 111 1 1258999999999955 578888765
Q ss_pred ----------HHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCeecC
Q 040324 325 ----------ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG 394 (488)
Q Consensus 325 ----------~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 394 (488)
++.+.+...-.+...+. ......|+-..++... ..++..+..+++.+|++.|.+.|.+.|+.++.
T Consensus 286 ~~k~~~~~~~~~~kkin~aVFPg~qgg-p~~h~IAAkAVaf~Ea----~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvs 360 (490)
T 3ou5_A 286 DPKTGREIPYTFEDRINFAVFPSLQGG-PHNHAIAAVAVALKQA----CTPMFREYSLQVLKNARAMADALLERGYSLVS 360 (490)
T ss_dssp CC--CCEEECCCHHHHHHHHTTTTCSS-CCHHHHHHHHHHHHHH----HSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred cccccchhHHHHHHHHHhhcCcccccc-chHHHHHHHHHHHHHH----HhHhHHHHHHHHHHHHHHHHHHHHhCCCeeec
Confidence 45566655433333332 2233333322234332 12367889999999999999999999999864
Q ss_pred -CCCCCeEEEEeCCcc-hHHHHHHHHHHCCceEEeecCCC--ccCCCCeEEEeecC----CCCHHHHHHHHHHHHHHHH
Q 040324 395 -DNDSPVMPIMVYNPA-KVSSFSRECLKQNVAIVTVGFPA--TPLLLARARICISA----SHTKEDLIEALEVISRIGD 465 (488)
Q Consensus 395 -~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gi~v~~~~~~~--~~~~~~~iRi~~~~----~~t~edid~~l~~l~~~~~ 465 (488)
...++++.+.+.... ...+..+.|.+.||.+..-.-|. .|...+.|||..+. ...++|++++.+.|.+++.
T Consensus 361 GgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 361 GGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp GSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 334577777775443 33455555556699987633332 23345679999654 3678999999999998875
No 235
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.70 E-value=6.4e-15 Score=145.76 Aligned_cols=295 Identities=15% Similarity=0.158 Sum_probs=187.8
Q ss_pred hCCCC--eEEeCCcHH-HHhhhhhcccCC----CcEEEEeCCCchHHHHHHHhcCCeEEEeeC---C-----CHHHHHHH
Q 040324 159 VGKPA--AIVFGMGYV-TNSSILPVLMGK----GSLIISDSLNHNSIVNGARGSGATIRVFQH---N-----TPSHLEEV 223 (488)
Q Consensus 159 ~g~~~--~i~~~sGs~-a~~~~~~~~~~~----~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~---~-----d~~~Le~~ 223 (488)
+|.+. ..|+.+|++ .+.+++.+.+++ ++.|+++...|.|...++.++|+.++.++. . |+++++++
T Consensus 129 ~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~a 208 (501)
T 3hl2_A 129 AGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAK 208 (501)
T ss_dssp TTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHH
T ss_pred cCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHH
Confidence 36553 344444444 565555555443 489999999999999999999999888764 1 89999999
Q ss_pred HHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCC-cchhcCCCCCCc
Q 040324 224 LREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDV 302 (488)
Q Consensus 224 l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~-~~~~~~v~p~~~ 302 (488)
|+++. +..+++|++.+.+...+.+.++++|.++|++||+++++||||.. .-..... ..+.+.. ...
T Consensus 209 I~e~g---------a~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGa--h~~~~~~lp~sA~~~--GrA 275 (501)
T 3hl2_A 209 VQELG---------PDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGV--QSSKCMHLIQQGARV--GRI 275 (501)
T ss_dssp HHHHC---------GGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCT--TCHHHHHHHHHHHHH--SCC
T ss_pred HHhcC---------CCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchh--hhhhhhhhHHHHHhc--CCC
Confidence 99851 23566666655444445667999999999999999999999973 2110010 1111111 125
Q ss_pred cEEEcccccccCC-cccEEE-e-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 040324 303 DIMMGTFSKSFGS-YGGYIA-G-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSN 379 (488)
Q Consensus 303 di~~~t~sK~~g~-~Gg~i~-~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~~~~~~~~~~~~~~ 379 (488)
|+++.|.+|.+-. .||.++ . ++++++.+.....+ +. +.+|.. ..+.++..+ +.+...+++++..++.+
T Consensus 276 D~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yPG-r~--S~Spsl--dl~~tLL~l----Gr~Gy~~ll~e~~ela~ 346 (501)
T 3hl2_A 276 DAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPG-RA--SASPSL--DVLITLLSL----GSNGYKKLLKERKEMFS 346 (501)
T ss_dssp CEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSCS-CB--CSHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred cEEEecccccceeecCceEEEeCCHHHHHHHHHhCCC-CC--CCcHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 8889999999854 344443 3 56777776543321 11 233332 233444443 22356788899999999
Q ss_pred HHHHHHHhC----CCeecCCCCCCeEEE-EeCC-----cchHHHHHHHHHHCCc---eEEeecC------------CC--
Q 040324 380 FFRSKLQKM----GFEVLGDNDSPVMPI-MVYN-----PAKVSSFSRECLKQNV---AIVTVGF------------PA-- 432 (488)
Q Consensus 380 ~l~~~L~~~----g~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~Gi---~v~~~~~------------~~-- 432 (488)
+|+++|+++ |-++...+..++-.. .+.. ......+.-.|..++| -+++.+- ..
T Consensus 347 ~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~ 426 (501)
T 3hl2_A 347 YLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHT 426 (501)
T ss_dssp HHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTS
T ss_pred HHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCC
Confidence 999999885 555555444554433 2221 1236688888888854 4544221 11
Q ss_pred ccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCCccCCCC
Q 040324 433 TPLLLARARICISASHTKEDLIEALEVISRIGDLVGIKYFPAE 475 (488)
Q Consensus 433 ~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~~~~~~~ 475 (488)
......++-......++++|+|.++++|++++.++..+..+..
T Consensus 427 ~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 469 (501)
T 3hl2_A 427 NNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKES 469 (501)
T ss_dssp SCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 0111357778777889999999999999999999876654433
No 236
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.69 E-value=8.1e-15 Score=147.02 Aligned_cols=302 Identities=17% Similarity=0.199 Sum_probs=185.4
Q ss_pred hhHHHHHHHHHHHhCCCCe---EEeCCcHHHH-hhhhhcc---cCCCcEEEEeCCCchHHHHHHHhcCCeEEEeeC---C
Q 040324 146 ALHNELEECVARFVGKPAA---IVFGMGYVTN-SSILPVL---MGKGSLIISDSLNHNSIVNGARGSGATIRVFQH---N 215 (488)
Q Consensus 146 ~~~~~l~~~la~~~g~~~~---i~~~sGs~a~-~~~~~~~---~~~~~~Vl~~~~~h~~~~~~~~~~g~~v~~~~~---~ 215 (488)
...+.+...+.+.+|.++. ++++++|..+ .+++.++ ..+++.|+++...|.|+..++.+.|..++.++. +
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~ 177 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEG 177 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEET
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecC
Confidence 3445777777777787643 6666665344 3333332 223688998999999999999999998887753 1
Q ss_pred -----CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEEEccccccccCCCCCC
Q 040324 216 -----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRG 290 (488)
Q Consensus 216 -----d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~DE~~s~g~~g~~g~~ 290 (488)
|++.|+++|+++. +..+++|++.+.+...|.+.++++|.++|++||++|++|+||. +.-+....
T Consensus 178 ~~~~id~~~le~aI~~~~---------~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G--~~~~~~~~ 246 (450)
T 3bc8_A 178 DELRTDLKAVEAKIQELG---------PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYG--LQSSKCMH 246 (450)
T ss_dssp TEEECCHHHHHHHHHHHC---------GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTT--TTCHHHHH
T ss_pred ccCCcCHHHHHHHHHhcC---------CCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCc--hhhhhhHh
Confidence 8999999998752 1256777776666656688899999999999999999999998 32111110
Q ss_pred cc-hhcCCCCCCccEEEcccccccCCc-c-cEEEe-CHHHHHHHHhhCCCCcccCCCCHHHHHHHHHHHHHHhccCCCch
Q 040324 291 VC-ELLGVDTSDVDIMMGTFSKSFGSY-G-GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCR 366 (488)
Q Consensus 291 ~~-~~~~v~p~~~di~~~t~sK~~g~~-G-g~i~~-~~~~~~~~~~~~~~~~~~~~~~p~~~aa~~a~L~~i~~~~~~~~ 366 (488)
.. +.+.. ...|+++.|.+|.+..+ | +++.. +++..+.+...-.+ . . +.+|. + ....++..+ +.+.
T Consensus 247 l~~~a~~~--~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g-~-~-s~Sps-L-~l~~~l~~~----G~~g 315 (450)
T 3bc8_A 247 LIQQGARV--GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG-R-A-SASPS-L-DVLITLLSL----GCSG 315 (450)
T ss_dssp HHHHHHHH--SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS-C-B-CSHHH-H-HHHHHHHHH----HHHH
T ss_pred HHHHHhcc--cCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhc-C-C-cccHH-H-HHHHHHHHH----HHHH
Confidence 00 11111 23488888999999753 4 55553 66666666543221 1 1 13332 1 122232222 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCeEEEE-eCC-----cchHHHHHHHHHHCC---ceEEe------
Q 040324 367 GAQKLARIRENSNFFRSKLQKM----GFEVLGDNDSPVMPIM-VYN-----PAKVSSFSRECLKQN---VAIVT------ 427 (488)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~l~~~G---i~v~~------ 427 (488)
..+.+++..++.+++++.|+++ |..+...+..++-... +.. ..+...+.-.+...| .-+.+
T Consensus 316 ~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~ 395 (450)
T 3bc8_A 316 YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQT 395 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccc
Confidence 4455666678888888888764 5555543322211111 111 223445666666654 33330
Q ss_pred ------ecCCC--ccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHHhCC
Q 040324 428 ------VGFPA--TPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469 (488)
Q Consensus 428 ------~~~~~--~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~ 469 (488)
-.|.. .-.....+=+..+...|++|+++++++|+++.+++..
T Consensus 396 ~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 396 VSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp ETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 01111 1123457778888899999999999999998876643
No 237
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=46.49 E-value=24 Score=30.70 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=30.2
Q ss_pred ceEEEEEcCc-CCCCCCCCChHHHHHHHHHcCcEEEE
Q 040324 240 KKIMVVVEGI-YSMEGELCKLPEIITICKRYKAYTYL 275 (488)
Q Consensus 240 ~~~~vi~e~v-~s~~G~~~~l~~l~~l~~~~g~~li~ 275 (488)
..+.||+|-+ .+.+|....++++.+++++||+.+|.
T Consensus 158 ~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 158 QPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp CSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 4578888874 56789999999999999999998873
No 238
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=41.94 E-value=47 Score=21.18 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=26.1
Q ss_pred CeEEEeecCCCCHHHHHHHHHHHHHHHHHhCC
Q 040324 438 ARARICISASHTKEDLIEALEVISRIGDLVGI 469 (488)
Q Consensus 438 ~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~ 469 (488)
.++||++. +-|+.+.+++..++-+++.+++-
T Consensus 2 ervrisit-artkkeaekfaailikvfaelgy 32 (62)
T 2gjh_A 2 ERVRISIT-ARTKKEAEKFAAILIKVFAELGY 32 (62)
T ss_dssp CEEEEEEE-CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEE-ecchhHHHHHHHHHHHHHHHhCc
Confidence 36899985 57899999999999999998863
No 239
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=39.93 E-value=28 Score=30.24 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=30.0
Q ss_pred ceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEE
Q 040324 240 KKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYL 275 (488)
Q Consensus 240 ~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~ 275 (488)
..+.||+|-+-+.+|....++++.+++++||+.+|.
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 457888886646789999999999999999987763
No 240
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=36.86 E-value=93 Score=23.34 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC----hHHHHHHHHHcCcE-EEEEcccc
Q 040324 216 TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK----LPEIITICKRYKAY-TYLDEAHS 280 (488)
Q Consensus 216 d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~----l~~l~~l~~~~g~~-li~DE~~s 280 (488)
+.+.|++++++. ....|+++-..+++|+..+ .++..+..++.++. ..+||-.|
T Consensus 39 ~~~~l~~li~e~------------~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERlT 96 (98)
T 1iv0_A 39 DVEALLDFVRRE------------GLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHH------------TCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSCC
T ss_pred HHHHHHHHHHHc------------CCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 456677777663 4557778877888887665 33444333333654 46898765
No 241
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=35.54 E-value=35 Score=30.15 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=29.5
Q ss_pred ceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEE
Q 040324 240 KKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYL 275 (488)
Q Consensus 240 ~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~ 275 (488)
..+.||+|-+ +.+|....++++.+++++||+.+|.
T Consensus 178 ~Pa~VicEi~-~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 178 VPITTICEMM-GDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp CSEEEEEEEB-CTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 5678888766 5679999999999999999988763
No 242
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=33.46 E-value=1.8e+02 Score=23.10 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhCCCeecCCCCCCeEEEEeCCcchHHHHHHHHHHCCceEEeecCCCccCCCC--eEEEeecCCCCH
Q 040324 373 RIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLA--RARICISASHTK 450 (488)
Q Consensus 373 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~--~iRi~~~~~~t~ 450 (488)
+..++.+ +.+.|.+-|.....+ ..--+++.+.+...+..++..+.+.|.-+...-......+.. .+.++.....+.
T Consensus 17 q~~~n~~-Vl~~L~e~Gddl~~~-r~IEH~~~F~de~~~e~~a~~~~~~Gy~v~~~~~~e~e~g~~~~~~~i~~~~~l~~ 94 (132)
T 1nxi_A 17 QKEETRD-IIQALLEDGSDPDAL-YEIEHHLFAEDFDKLEKAAVEAFKMGFEVLEAEETEDEDGNKLLCFDATMQSALDA 94 (132)
T ss_dssp HHHHHHH-HHHHHHHHTCCTTSC-EEEEEEEEESCHHHHHHHHHHHHHHTCCCBCCCCBCCSSCSSBEEEEEEEEECSCH
T ss_pred HHHHHHH-HHHHHHhCCCCcCCC-eEEEEEEEeCCHHHHHHHHHHHHHCCCEEEecccccCCCCceeEEEEEEEeccCCH
Confidence 3344444 445566656544222 111235567777888899999999888775211101111112 567776667889
Q ss_pred HHHHHHHHHHHHHHHHhCCcc
Q 040324 451 EDLIEALEVISRIGDLVGIKY 471 (488)
Q Consensus 451 edid~~l~~l~~~~~~~~~~~ 471 (488)
++|+.....|.+..++++-.|
T Consensus 95 ~~I~~~~~~L~~lA~~~~G~Y 115 (132)
T 1nxi_A 95 KLIDEQVEKLVNLAEKFDIIY 115 (132)
T ss_dssp HHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHhCcEe
Confidence 999999999999999987655
No 243
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=33.41 E-value=45 Score=29.23 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=28.9
Q ss_pred ceEEEEEcCcCCCCCCCCChHHHHHHHHHcCcEEEE
Q 040324 240 KKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYL 275 (488)
Q Consensus 240 ~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g~~li~ 275 (488)
..+.||+|-+ +.+|....++++.+++++||+.+|.
T Consensus 167 ~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 167 KPAGVLCELT-NDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp CSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEEE
Confidence 4567777755 6779999999999999999998763
No 244
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=31.00 E-value=88 Score=22.08 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=26.5
Q ss_pred CeEEEeecCCCCHHHHHHHHHHHHHHHHHhCC
Q 040324 438 ARARICISASHTKEDLIEALEVISRIGDLVGI 469 (488)
Q Consensus 438 ~~iRi~~~~~~t~edid~~l~~l~~~~~~~~~ 469 (488)
.++||++. +-|+.+.+++..++-+++.+++-
T Consensus 46 krvrisit-artkkeaekfaailikvfaelgy 76 (106)
T 1qys_A 46 KRVRISIT-ARTKKEAEKFAAILIKVFAELGY 76 (106)
T ss_dssp SEEEEEEE-CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEEE-ecchhHHHHHHHHHHHHHHHhCC
Confidence 57999985 57899999999999999998863
No 245
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=28.67 E-value=2.3e+02 Score=25.53 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEc-C--cC-CCCCCCCChHHHHHHHHHcCcEEEEEcccc
Q 040324 216 TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE-G--IY-SMEGELCKLPEIITICKRYKAYTYLDEAHS 280 (488)
Q Consensus 216 d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e-~--v~-s~~G~~~~l~~l~~l~~~~g~~li~DE~~s 280 (488)
+++++..+++.....|. .. +++++ + .+ +-.-...+|..+..+.+.++..+|.|-.|+
T Consensus 142 t~~e~~~Av~~i~~~Gn-------~~-i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~ 202 (262)
T 1zco_A 142 TIQELLYSAEYIMAQGN-------EN-VILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHP 202 (262)
T ss_dssp CHHHHHHHHHHHHTTTC-------CC-EEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTT
T ss_pred CHHHHHHHHHHHHHCCC-------Ce-EEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCC
Confidence 57777777665444332 22 33333 2 11 111123368899998888899999999998
No 246
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=28.21 E-value=67 Score=26.31 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCC-h---HHHH-HHHHHcCcE-EEEEcccc
Q 040324 216 TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCK-L---PEII-TICKRYKAY-TYLDEAHS 280 (488)
Q Consensus 216 d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~-l---~~l~-~l~~~~g~~-li~DE~~s 280 (488)
+.+.|.+++++ +..-.|++|-+++++|+..+ . ++++ .+++++++. .++||.++
T Consensus 43 ~~~~l~~li~~------------~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKD------------YTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTT------------SEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHH------------cCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 57778777776 35667777777888887664 2 2333 444556764 56899987
No 247
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=28.19 E-value=36 Score=26.55 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=38.3
Q ss_pred CcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 040324 407 NPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 407 ~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~~~~~ 466 (488)
.+.+..++.+.|.+.|+......-..+-...+..++-+ ...++++|+.+++|.+..+.
T Consensus 14 rp~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~lei--vV~De~Vd~vi~~I~~~a~T 71 (114)
T 3m05_A 14 QDKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMI--GIEEERVPEVLEIIKKASHT 71 (114)
T ss_dssp EHHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEE--EEEGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEE--EEcHHHHHHHHHHHHHHcCC
Confidence 56778899999999988764321000001112455544 67899999999999987643
No 248
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=27.77 E-value=1.5e+02 Score=21.98 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=29.0
Q ss_pred HHHHHHHHC-CceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHH
Q 040324 413 SFSRECLKQ-NVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVI 460 (488)
Q Consensus 413 ~~~~~l~~~-Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l 460 (488)
+.+++|... |+.-. .+.+||+.|...++.++...++.+
T Consensus 78 E~srYLi~~HGF~~A----------GGL~~I~~P~E~SK~~V~~~i~~~ 116 (125)
T 3o2i_A 78 EVSKYLVTAHGFVEA----------GGLQEIGFPGELSKTEVRRRINAF 116 (125)
T ss_dssp HHHHHHHHHHCCEEE----------CCEEEEEEETTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccc----------CCeEEecCchhhhHHHHHHHHHHH
Confidence 566666665 65333 268999999999999999988876
No 249
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=27.58 E-value=2.2e+02 Score=22.16 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=37.3
Q ss_pred CeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEE-EcCcCCCCCCCCChHHHHHHHHHcCcEEE
Q 040324 207 ATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVV-VEGIYSMEGELCKLPEIITICKRYKAYTY 274 (488)
Q Consensus 207 ~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi-~e~v~s~~G~~~~l~~l~~l~~~~g~~li 274 (488)
..+...+..|++.+.+.|.+.+.+. |.=- ....+|+ ++.+-. ..++.+|.++|+++|+.+|
T Consensus 17 l~vl~l~~~d~~~l~~~L~~ki~~a-P~FF--~~aPVVlDl~~l~~----~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 17 LSVVHLHEAEPEVIRQALEDKIAQA-PAFL--KHAPVVINVSGLES----PVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHHHS-HHHH--TTCEEEEEEEECCS----SCCHHHHHHHHHTTTCEEE
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHhC-hHhh--CCCcEEEEccccCC----hHHHHHHHHHHHHcCCEEE
Confidence 4456666778888888877654331 0000 0222333 344432 2479999999999999875
No 250
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=25.95 E-value=1.1e+02 Score=21.74 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=37.3
Q ss_pred eCCcchHHHHHHHHHHCCceEEeecCCCccCCCCeEEEeecCCCCHHHHHHHHHHHHH
Q 040324 405 VYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISR 462 (488)
Q Consensus 405 ~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~iRi~~~~~~t~edid~~l~~l~~ 462 (488)
+.+...+..+...|...|+-..... +..+.|+.+....++++.+.+++.|++
T Consensus 17 F~~~~~A~~l~~~L~~~G~~a~i~~------~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 17 FRGAEQAETVRAQLAFEGFDSKITT------NNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp ESCHHHHHHHHHHHHHHTCCEEEEE------CSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEEe------CCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 4566778889999988887554321 234566666667889999999888876
No 251
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=23.66 E-value=31 Score=34.18 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCCCChHHHHHHHHHcCcEEEEEcccc
Q 040324 253 EGELCKLPEIITICKRYKAYTYLDEAHS 280 (488)
Q Consensus 253 ~G~~~~l~~l~~l~~~~g~~li~DE~~s 280 (488)
-|+...++++++-|+++|+-||+|-|..
T Consensus 73 ~Gt~~df~~lv~~aH~~Gi~VilD~V~N 100 (496)
T 4gqr_A 73 SGNEDEFRNMVTRCNNVGVRIYVDAVIN 100 (496)
T ss_dssp TBCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 3555579999999999999999999964
No 252
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=21.88 E-value=1e+02 Score=24.78 Aligned_cols=53 Identities=23% Similarity=0.205 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChH-HHHH----HHHHcCc-EEEEEcccc
Q 040324 216 TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLP-EIIT----ICKRYKA-YTYLDEAHS 280 (488)
Q Consensus 216 d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~-~l~~----l~~~~g~-~li~DE~~s 280 (488)
+.+.|++++++. ....|+++-..+++|+..+.. .+.+ |.+++++ +..+||-.|
T Consensus 41 ~~~~l~~li~e~------------~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERlT 99 (138)
T 1nu0_A 41 DWNIIERLLKEW------------QPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLS 99 (138)
T ss_dssp CHHHHHHHHHHH------------CCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_pred HHHHHHHHHHHc------------CCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 688999998874 455777887788888777522 2222 3344565 457999987
No 253
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=21.68 E-value=2.4e+02 Score=25.31 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=32.9
Q ss_pred cCCeEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcCcCCCCCCCCChHHHHHHHHHcC-c
Q 040324 205 SGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK-A 271 (488)
Q Consensus 205 ~g~~v~~~~~~d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~v~s~~G~~~~l~~l~~l~~~~g-~ 271 (488)
.+..++..+..|.++++++++. ..++|.+-+.......+.....+.+.|++.| +
T Consensus 55 ~~~~~~~~D~~d~~~l~~~~~~-------------~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v 109 (313)
T 1qyd_A 55 LGAKLIEASLDDHQRLVDALKQ-------------VDVVISALAGGVLSHHILEQLKLVEAIKEAGNI 109 (313)
T ss_dssp TTCEEECCCSSCHHHHHHHHTT-------------CSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCC
T ss_pred CCeEEEeCCCCCHHHHHHHHhC-------------CCEEEECCccccchhhHHHHHHHHHHHHhcCCC
Confidence 4666666666788888887753 2234433333322212335678999999988 5
No 254
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=21.24 E-value=69 Score=26.69 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCceEEEEEcC-cCCCCCCCCChHHHHHHHHHcCcEEEE
Q 040324 216 TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEG-IYSMEGELCKLPEIITICKRYKAYTYL 275 (488)
Q Consensus 216 d~~~Le~~l~~~~~~~~p~~~~~~~~~~vi~e~-v~s~~G~~~~l~~l~~l~~~~g~~li~ 275 (488)
+++.+.+.|.++ ++-+|++++ +...+ -.+++++++++.|+.++.
T Consensus 23 ~v~~aa~~L~~A------------krPvil~G~g~~~~~----a~~~l~~lae~~~iPV~~ 67 (170)
T 3cf4_G 23 SPEMAAKIISKA------------KRPLLMVGTLALDPE----LLDRVVKISKAANIPIAA 67 (170)
T ss_dssp CHHHHHHHHHHC------------SSEEEEECSTTCCHH----HHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHcC------------CCCEEEECCCccchh----HHHHHHHHHHHhCCCEEE
Confidence 467777777663 445666654 33222 367899999999999875
No 255
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=20.75 E-value=84 Score=27.77 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=28.4
Q ss_pred ceEEEEEcCcCCC-----------CCCCCChHHHHHHHHHcCcEEEE
Q 040324 240 KKIMVVVEGIYSM-----------EGELCKLPEIITICKRYKAYTYL 275 (488)
Q Consensus 240 ~~~~vi~e~v~s~-----------~G~~~~l~~l~~l~~~~g~~li~ 275 (488)
..+.||+|-+ +. +|....++++.+++++||+.++.
T Consensus 167 ~PagVicEi~-~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 167 RPVAVISEIV-DDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCT 212 (233)
T ss_dssp CSBEEEEEBE-ECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEeC-CCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 4577888755 44 68888999999999999998774
No 256
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=20.37 E-value=1e+02 Score=20.43 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 040324 447 SHTKEDLIEALEVISRIGDL 466 (488)
Q Consensus 447 ~~t~edid~~l~~l~~~~~~ 466 (488)
..|+|+.+.++++|+++++.
T Consensus 4 ~lt~eq~~aILkaLdeaIe~ 23 (57)
T 3fxd_A 4 QLSDEQKETILKALNDAIEK 23 (57)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHc
Confidence 36899999999999999875
No 257
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=20.02 E-value=50 Score=24.06 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.5
Q ss_pred hHHHHHHHHHcCcEEEEEccc
Q 040324 259 LPEIITICKRYKAYTYLDEAH 279 (488)
Q Consensus 259 l~~l~~l~~~~g~~li~DE~~ 279 (488)
-.+|+++++++|+.++.|.--
T Consensus 29 A~~I~~~A~e~~VPi~e~~~L 49 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIPL 49 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHH
Confidence 479999999999999999753
Done!