RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 040324
(488 letters)
>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase.
Length = 489
Score = 1016 bits (2628), Expect = 0.0
Identities = 419/489 (85%), Positives = 452/489 (92%), Gaps = 1/489 (0%)
Query: 1 MIAIPYFTALTTYFSYGLLFVFGQFRDFFRKILDWWSTDNLQGYAPICLGLEDFYIRRLY 60
MI IPY TALTTYFSYGLLF FGQ RDFFR ILDWW T NLQGYAPICLGLEDFYIRRLY
Sbjct: 1 MITIPYLTALTTYFSYGLLFAFGQLRDFFRAILDWWKTSNLQGYAPICLGLEDFYIRRLY 60
Query: 61 NRVQDCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYC 120
R+QDCF RP++SAPDAWFDVVER SNDNNKTLKRT RCLNLGSYNYLGFAAADEYC
Sbjct: 61 LRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRCLNLGSYNYLGFAAADEYC 120
Query: 121 TPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPV 180
TPRVI+SLKKYS STCSSRVDGGT LH ELEE VARFVGKPAAIVFGMGY TNS+I+P
Sbjct: 121 TPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPA 180
Query: 181 LMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWK 240
L+GKG LIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRT RPWK
Sbjct: 181 LIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWK 240
Query: 241 KIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTS 300
KI+V+VEGIYSMEGELCKLPEI+ +CK+YKAY YLDEAHSIGAVGKTGRGVCELLGVD +
Sbjct: 241 KIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPA 300
Query: 301 DVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIG 360
DVDIMMGTF+KSFGS GGYIAGSKELIQYLK CPAHLYATS+SPPA +Q+ISAI+V++G
Sbjct: 301 DVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILG 360
Query: 361 EDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLK 420
EDG+ RGAQKLA+IRENSNFFRS+LQKMGFEVLGDNDSPVMPIM+YNPAK+ +FSRECLK
Sbjct: 361 EDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLK 420
Query: 421 QNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGIKYFPAEPKKQQ 480
QNVA+V VGFPATPLLLARARICISASH++EDLI+ALEVIS +GDLVGIKYFPAEPKKQ+
Sbjct: 421 QNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVGIKYFPAEPKKQE 480
Query: 481 QV-GMLKLE 488
QV +KLE
Sbjct: 481 QVKKFIKLE 489
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 469 bits (1210), Expect = e-165
Identities = 154/365 (42%), Positives = 219/365 (60%), Gaps = 16/365 (4%)
Query: 100 SRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFV 159
+ LN S +YLG A ++L KY SR+ GT LH ELEE +A F
Sbjct: 1 KKVLNFCSNDYLGLAN-HPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFH 59
Query: 160 GKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSH 219
GK AA+VF GY N +L L GKG LIISDSLNH SI++G R SGA R+F+HN
Sbjct: 60 GKEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMED 119
Query: 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAH 279
LE++LRE RRP+ K ++V EG+YSM+G++ LPE++ + K+Y A ++DEAH
Sbjct: 120 LEKLLREA--------RRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAH 171
Query: 280 SIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLY 339
S+G G GRGV E G T DVDI+MGT K+FG+ GGYIAGSKELI YL+ ++
Sbjct: 172 SVGVYGPHGRGVEE-FGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIF 230
Query: 340 ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP 399
+TS+ P A ++A++V+ G ++ R++EN + R L+++GF V G
Sbjct: 231 STSLPPAVAAAALAALEVLQGGP------ERRERLQENVRYLRRGLKELGFPVGGSPSHI 284
Query: 400 VMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEV 459
+ P++ +PAK +FS L++ + + + +P P AR RI +SA+HTKED+ LE
Sbjct: 285 IPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEA 344
Query: 460 ISRIG 464
+ +G
Sbjct: 345 LKEVG 349
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 363 bits (935), Expect = e-123
Identities = 133/367 (36%), Positives = 217/367 (59%), Gaps = 15/367 (4%)
Query: 98 NVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVAR 157
+ + LN S +YLG A+ E ++++Y SR+ GT LH ELEE +A
Sbjct: 37 DGRKVLNFCSNDYLGLASHPE-LIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELAD 95
Query: 158 FVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTP 217
F+G AA++F G+V N +L L+ KG LI SD LNH SI++G R S A +R F+HN
Sbjct: 96 FLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDL 155
Query: 218 SHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDE 277
HLE +L E G R ++V EG++SM+G++ LPE++ + ++Y A Y+DE
Sbjct: 156 DHLEALLEEARENGARR-------KLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDE 208
Query: 278 AHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAH 337
AH++G +G GRG+ E G++ +VDI++GT K+ GS GGYIAGS LI YL+
Sbjct: 209 AHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPF 268
Query: 338 LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND 397
+++T++ P A ++A++++ G ++ R++E + FFRS L+ +G VL ++
Sbjct: 269 IFSTALPPAVAAAALAALRILE------EGPERRERLQELAAFFRSLLKALGL-VLLPSE 321
Query: 398 SPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEAL 457
SP++P+++ + + SR L++ + + + P P AR RI ++A+HT+ED+
Sbjct: 322 SPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLA 381
Query: 458 EVISRIG 464
E +S +G
Sbjct: 382 EALSEVG 388
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 303 bits (778), Expect = 1e-99
Identities = 126/396 (31%), Positives = 214/396 (54%), Gaps = 41/396 (10%)
Query: 69 RPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDS- 127
RPL P V R + + L LN S +YLG A+ P VI +
Sbjct: 1 RPLDRGPGPE---VVR----DGRRL---------LNFSSNDYLGLAS-----HPEVIQAA 39
Query: 128 ---LKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGK 184
++Y + +SR+ G LH ELEE +A + G AA++F GY+ N ++ L+GK
Sbjct: 40 QQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGK 99
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMV 244
G LI+SD+LNH S+++G R SGA +R ++HN HLE +L + E + ++
Sbjct: 100 GDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKNRGERR---------KLI 150
Query: 245 VVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDI 304
V +G++SM+G++ LP+++ + +RY A+ +D+AH G +G+ GRG E G+ VDI
Sbjct: 151 VTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDI 210
Query: 305 MMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGS 364
+GT SK+ GSYG Y+AGS+ LI YL +++T++ P A ++A++ +I E+
Sbjct: 211 QVGTLSKALGSYGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALE-LIQEEPW 269
Query: 365 CRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVA 424
R ++ R+ L+ +GF L + +P++P+++ + A + + E +Q +
Sbjct: 270 RR-----EKLLALIARLRAGLEALGF-TLMPSCTPIVPVIIGDNASALALAEELQQQGIF 323
Query: 425 IVTVGFPATPLLLARARICISASHTKEDLIEALEVI 460
+ + P P +R R+ +SA+HT D+ E +
Sbjct: 324 VGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEAL 359
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 292 bits (749), Expect = 6e-95
Identities = 117/400 (29%), Positives = 193/400 (48%), Gaps = 42/400 (10%)
Query: 69 RPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI--- 125
RP W V R R LN S +YLG A PR+I
Sbjct: 24 RPREGGAGRWLVVDGR----------------RMLNFASNDYLGLARH-----PRLIAAA 62
Query: 126 -DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGK 184
+ ++Y + SR+ G H LEE +A + G A++F GY N ++L L GK
Sbjct: 63 QQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGK 122
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMV 244
G LI+SD LNH S+++GAR S A +R + HN LE +L + R R +
Sbjct: 123 GDLIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEALLA------KWRAGRAL----I 172
Query: 245 VVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDI 304
V E ++SM+G+L L E++ + +R+ A+ +DEAH G +G GRG+ G+ I
Sbjct: 173 VTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVI 232
Query: 305 MMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGS 364
++GT K+ GS G + GS+ LI YL ++ T++ P A +A++++ E
Sbjct: 233 LVGTLGKALGSSGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREP-- 290
Query: 365 CRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVA 424
++ R+ R+ L+ +GF+ L D+ S + P++V + + + + +Q
Sbjct: 291 ----ERRERLAALIARLRAGLRALGFQ-LMDSQSAIQPLIVGDNERALALAAALQEQGFW 345
Query: 425 IVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464
+ + P P +R RI ++A+HT+ D+ LE ++
Sbjct: 346 VGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385
>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
acyltransferase, putative. This model represents an
enzyme subfamily related to three known enzymes; it
appears closest to glycine C-acteyltransferase, shows no
overlap with it in species distribution, and may share
that function. The three closely related enzymes are
glycine C-acetyltransferase (2-amino-3-ketobutyrate
coenzyme A ligase), 5-aminolevulinic acid synthase, and
8-amino-7-oxononanoate synthase. All transfer the
R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
coenzyme A to an amino acid (Gly, Gly, Ala,
respectively), with release of CO2 for the latter two
reactions.
Length = 385
Score = 290 bits (744), Expect = 3e-94
Identities = 129/372 (34%), Positives = 210/372 (56%), Gaps = 18/372 (4%)
Query: 98 NVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVAR 157
N +NL S NYLGFA ++++Y + R GTL LH ELEE +A+
Sbjct: 31 NGKEVINLSSNNYLGFAD-HPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAK 89
Query: 158 FVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTP 217
F AA+VF G+ TN +L L+ KG +++SD LNH SI++G R + AT ++++H
Sbjct: 90 FKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYKHADM 149
Query: 218 SHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDE 277
L+ VLRE + G K ++V +G++SM+G++ LPEI+ + +RY A TY+D+
Sbjct: 150 DDLDRVLRENPSYG---------KKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDD 200
Query: 278 AHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAH 337
AH G +G+ GRG G++ VDI +GT SK+ G GGY AG KELI+YLK
Sbjct: 201 AHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARPF 259
Query: 338 LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND 397
L++T+ P + +A+ + + + R+ +N+ FF++ L K+G++ G ++
Sbjct: 260 LFSTAQPPAVVAALAAAVDELQRSP------ELMERLWDNTRFFKAGLGKLGYD-TGGSE 312
Query: 398 SPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEAL 457
+P+ P+++ + FSR + + ++ FP P AR R +A HTK+DL +AL
Sbjct: 313 TPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQAL 372
Query: 458 EVISRIGDLVGI 469
+ ++G +G+
Sbjct: 373 DAYEKVGKELGL 384
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 275 bits (706), Expect = 2e-88
Identities = 120/372 (32%), Positives = 195/372 (52%), Gaps = 25/372 (6%)
Query: 103 LNLGSYNYLGFAAADEYCTPRVI----DSLKKYSHSTCSSRVDGGTLALHNELEECVARF 158
+N + NYLG A P +I +L + S R GT LH ELEE +A+F
Sbjct: 45 INFCANNYLGLAN-----HPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKF 99
Query: 159 VGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPS 218
+G AI++ + N + L+GK IISD+LNH SI++G R A + +N +
Sbjct: 100 LGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYANNDMA 159
Query: 219 HLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEA 278
LE L+E G + ++ +G++SM+G++ LPEI + +Y A +D++
Sbjct: 160 DLEAQLKEAKEAGA-------RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDS 212
Query: 279 HSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSF-GSYGGYIAGSKELIQYLKYNCPAH 337
H++G VG+ GRG E GV VDI+ GT K+ G+ GGY AG KE+I +L+ +
Sbjct: 213 HAVGFVGENGRGTVEHFGVM-DRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPY 271
Query: 338 LYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND 397
L++ S++P I ++++ E R R+ EN+ +FR + GF LG +
Sbjct: 272 LFSNSLAPAIVAASIKVLELLE-ESDELR-----DRLWENARYFREGMTAAGFT-LGPGE 324
Query: 398 SPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEAL 457
P++P+M+ + F+ L++ V ++ FP P AR R +SA+HTKE L A+
Sbjct: 325 HPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAI 384
Query: 458 EVISRIGDLVGI 469
+ ++G +G+
Sbjct: 385 DAFEKVGKELGV 396
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 221 bits (566), Expect = 1e-67
Identities = 121/380 (31%), Positives = 200/380 (52%), Gaps = 25/380 (6%)
Query: 95 RTNNVSRCLNLGSYNYLGFAAADEYCTPRVI----DSLKKYSHSTCSSRVDGGTLALHNE 150
R + LN + NYLG ++ P +I D+L ++ S R GT +H E
Sbjct: 33 RVADGREVLNFCANNYLGLSSH-----PDLIQAAKDALDEHGFGMSSVRFICGTQDIHKE 87
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIR 210
LE +A F+G I++ + N + L+G IISD+LNH SI++G R A
Sbjct: 88 LEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRY 147
Query: 211 VFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK 270
+ +N + LE L+E A G R R ++ +G++SM+G + L EI + +Y
Sbjct: 148 RYANNDMADLEAQLKEARAAG-ARHR------LIATDGVFSMDGVIAPLDEICDLADKYD 200
Query: 271 AYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSF-GSYGGYIAGSKELIQY 329
A +DE H+ G +G TGRG EL GV VDI+ GT K+ G+ GG+ KE+++
Sbjct: 201 ALVMVDECHATGFLGPTGRGSHELCGV-MGRVDIITGTLGKALGGASGGFTTARKEVVEL 259
Query: 330 LKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMG 389
L+ +L++ S+ PPA + ++I+V+ + S +L N+ +FR +++ G
Sbjct: 260 LRQRSRPYLFSNSL-PPAV--VGASIKVLEMLEASNELRDRLW---ANTRYFRERMEAAG 313
Query: 390 FEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHT 449
F++ D P++P+M+Y+ F+R L++ + + +P P AR R+ ISA+HT
Sbjct: 314 FDIKP-ADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHT 372
Query: 450 KEDLIEALEVISRIGDLVGI 469
+E L A+E +RIG +G+
Sbjct: 373 EEQLDRAVEAFTRIGRELGV 392
>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.
Length = 407
Score = 215 bits (551), Expect = 3e-65
Identities = 114/353 (32%), Positives = 183/353 (51%), Gaps = 36/353 (10%)
Query: 125 IDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTN-------SSI 177
I++L + +R GT H ELE +A GK AA+VF GYV+N + +
Sbjct: 70 IEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKL 129
Query: 178 LPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRR 237
+P +I SD LNH S++ G R S +F+HN +HLEE+L + R
Sbjct: 130 IP-----DCVIFSDELNHASMIEGIRRSRCEKHIFRHNDVAHLEELLAAADPD------R 178
Query: 238 PWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGV 297
P K+ + E +YSM+G++ + EI + +Y A TYLDE H++G G G G+ E G+
Sbjct: 179 P--KL-IAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGL 235
Query: 298 DTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQV 357
+DI+ GT +K+FG GGYIAGS L+ ++ P ++ TS+ P A +++I+
Sbjct: 236 MD-RIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRH 294
Query: 358 VIGEDGSCRGAQKL-ARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSR 416
+ + + + R +E + ++ L G V+ N+S ++P+MV +P K S
Sbjct: 295 L-------KESNEERERHQERAAKLKAALDAAGIPVM-PNESHIVPVMVGDPEKCKKASD 346
Query: 417 ECLKQ-NVAIVTVGFPATPLLLARARICISASHTKED---LIEAL-EVISRIG 464
L++ + + + +P P R RI + HT E L+EAL EV +R+G
Sbjct: 347 MLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLG 399
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 197 bits (503), Expect = 3e-58
Identities = 116/341 (34%), Positives = 179/341 (52%), Gaps = 27/341 (7%)
Query: 125 IDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGK 184
++L KY +R GT H ELE +A GK +A+VF GYV N + L L
Sbjct: 69 HETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKI 128
Query: 185 --GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKI 242
G +I SD LNH S++ G R SGA +F+HN +HLE++L P RP KI
Sbjct: 129 IPGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLEKLL----QSVDPN--RP--KI 180
Query: 243 MVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDV 302
+ E +YSM+G++ + EI + +Y A TYLDE H++G G G G+ E G+ +
Sbjct: 181 -IAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGL-MHRI 238
Query: 303 DIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGED 362
DI+ GT +K+FG GGYIA S++LI ++ P ++ TS+ P A ++I+ +
Sbjct: 239 DIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL---- 294
Query: 363 GSCRGAQKLARIR--ENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECL- 419
+ +Q L R EN ++ L+ +G V+ N S ++P+++ + A S L
Sbjct: 295 ---KESQDL-RRAHQENVKRLKNLLEALGIPVI-PNPSHIVPVIIGDAALCKKVSDLLLN 349
Query: 420 KQNVAIVTVGFPATPLLLARARICISASHTK---EDLIEAL 457
K + + + +P P R RI + +HT +DL+EAL
Sbjct: 350 KHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEAL 390
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 188 bits (480), Expect = 6e-55
Identities = 114/363 (31%), Positives = 185/363 (50%), Gaps = 36/363 (9%)
Query: 107 SYNYLGFAAADEYCTPRVI----DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP 162
S +YLG P VI D+L +Y +R GT H LE +A GK
Sbjct: 53 SNDYLGMGQH-----PDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKE 107
Query: 163 AAIVFGMGYVTNSSILPVLMGK--GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
+A++F GYV+N + L L G +I+SD+LNH S++ G R SGA +VF+HN + L
Sbjct: 108 SALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHNDLADL 167
Query: 221 EEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHS 280
EE L + +P+ ++ E +YSM+G++ + I + RY A TY+DE H+
Sbjct: 168 EEQL-ASVDPDRPK--------LIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHA 218
Query: 281 IGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYA 340
+G G G G+ E G+ +D++ GT +K+FG GGYIA S +LI +++ P ++
Sbjct: 219 VGLYGARGGGIAERDGL-MDRIDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFT 277
Query: 341 TSISPPAAEQIISAIQVVIGEDGSCRGA--QKLARIRENSNFFRSKLQKMGFEVLGDNDS 398
T++ P A +AI+ + + R A ++A + ++KL G V+ + S
Sbjct: 278 TALPPAVAAGATAAIR-HLKTSQTERDAHQDRVAAL-------KAKLNANGIPVM-PSPS 328
Query: 399 PVMPIMVYNPAKVSSFSRECLKQN-VAIVTVGFPATPLLLARARICISASHTKED---LI 454
++P+MV +P + S + ++ + I + +P P R RI + H ED L+
Sbjct: 329 HIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALV 388
Query: 455 EAL 457
AL
Sbjct: 389 AAL 391
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 188 bits (479), Expect = 1e-54
Identities = 122/373 (32%), Positives = 183/373 (49%), Gaps = 41/373 (10%)
Query: 107 SYNYLGFAAADEYCTPRVI----DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP 162
S +YLG P V+ ++L +R GT H LE +A GK
Sbjct: 52 SNDYLGMGQ-----HPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKE 106
Query: 163 AAIVFGMGYVTNSSILPVLMGK--GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
AA++F GYV+N + L L + G +I+SD LNH S++ G R S A R+F+HN P+ L
Sbjct: 107 AALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRHNDPADL 166
Query: 221 EEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHS 280
E L + RP K+ V E +YSM+G++ + EI + +++ A TYLDE H+
Sbjct: 167 ERKLSDLDPH------RP--KL-VAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHA 217
Query: 281 IGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYA 340
+G G G G+ E G+ + I+ GT +K+FG GGYI GS L +++ ++
Sbjct: 218 VGLYGPRGGGIAEREGL-ADRLTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIFT 276
Query: 341 TSISPPAAEQIISAIQVVIGEDGSCR----GAQKLARIRENSNFFRSKLQKMGFEVLGDN 396
TS+ PPA V G S R + + R ++ R++L K G L N
Sbjct: 277 TSL-PPA---------VAAGALASVRHLKASSAERERHQDRVARLRARLDKAGIPHL-PN 325
Query: 397 DSPVMPIMVYNPAKVSSFSRECLKQNVAIVT-VGFPATPLLLARARICISASHTKED--- 452
S ++P+MV +P S E L + V + +P P R RI S HT D
Sbjct: 326 PSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEH 385
Query: 453 LIEAL-EVISRIG 464
L++AL E+ +R+G
Sbjct: 386 LVQALSEIWARLG 398
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 176 bits (449), Expect = 6e-51
Identities = 90/382 (23%), Positives = 151/382 (39%), Gaps = 50/382 (13%)
Query: 102 CLNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGK 161
+NLGS YLG D P V + K +R G EL E +A+F+G+
Sbjct: 3 KINLGSNEYLG----DSGTLPAVAKAEKD--ALAGGTRNLYGPTDGLPELREALAKFLGR 56
Query: 162 P--------AAIVFGMGYVTNSSILPVLMG--KGSLIISDSLNHNSIVNGARGSGATIRV 211
AA+VFG G N L L+ G I+ + + S + R +G +
Sbjct: 57 SPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVR 116
Query: 212 F-------QHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPE--- 261
+ H LE L+E +V+ ++ G + L E
Sbjct: 117 YPLYSSNDFHLDFDALEAALKEA----------TEGNKVVLHTSPHNPTGTVATLEELEK 166
Query: 262 IITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---G 318
++ + K + +DEA++ G + V + +++G+FSK+FG G G
Sbjct: 167 LLDLAKEHNILLLVDEAYAGFVFG-SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVG 225
Query: 319 YIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENS 378
YI G+ +I L+ Y+++ AA +S +V E + RI+E
Sbjct: 226 YILGNAAVISQLR-KLARPFYSSTHLQAAAAAALSDPLLVASE-----LEEMRQRIKERR 279
Query: 379 NFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLA 438
++ R L+ G VL + + + +P + ++ L++ VT G
Sbjct: 280 DYLRDGLEAAGLSVL-PSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSS--FGGPG 336
Query: 439 RARICISASHTKEDLIEALEVI 460
RI + A T+E+L E LE I
Sbjct: 337 WLRITV-AGGTEEELEELLEAI 357
>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
Length = 481
Score = 164 bits (418), Expect = 2e-45
Identities = 106/378 (28%), Positives = 185/378 (48%), Gaps = 24/378 (6%)
Query: 103 LNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP 162
+N S NYLG +E +L+KY +C R GT+ +H + E +A+F+G P
Sbjct: 112 VNFASANYLGLIG-NEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTP 170
Query: 163 AAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEE 222
+I++ G T S++P KG +I++D H I NG S +TI F+HN L
Sbjct: 171 DSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRN 230
Query: 223 VLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIG 282
L E++ R ++ + I VVE IY G++ L EI+ + ++Y+ LDE++S G
Sbjct: 231 TL-EKLTAENKRKKKLRRYI--VVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFG 287
Query: 283 AVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATS 342
+GK+GRG+ E GV +DI+ + + GG+ GS ++ + + + ++++ S
Sbjct: 288 VLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSAS 347
Query: 343 ISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVM 401
+ P A I+AI V+ ED LA+++EN L + G + + SP++
Sbjct: 348 LPPYLASAAITAIDVL--EDNP----SVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIV 401
Query: 402 PIMVYNPAKVSS--------FSRECLKQNVAIVTVGFPATPL----LLARARICISASHT 449
+ + + + LK++ +V V + L L R+ +SA HT
Sbjct: 402 FLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVS-KRSTLDKCRLPVGIRLFVSAGHT 460
Query: 450 KEDLIEALEVISRIGDLV 467
+ D+++A E + R+ V
Sbjct: 461 ESDILKASESLKRVAASV 478
>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein;
Provisional.
Length = 392
Score = 156 bits (396), Expect = 4e-43
Identities = 98/391 (25%), Positives = 178/391 (45%), Gaps = 34/391 (8%)
Query: 103 LNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP 162
LN ++++L ++ ++SL Y +C R GT+ H ELE+C+A F+G
Sbjct: 1 LNFATHDFLS-TSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTE 59
Query: 163 AAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEE 222
+AI++ G T SS + +G L++ D + +++ G S A +R F+HN L
Sbjct: 60 SAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRR 119
Query: 223 VLREQIAEG--QPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHS 280
VL EQ+ + + ++ +VVEG+Y G L L E++ + + + LDE+ S
Sbjct: 120 VL-EQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFS 178
Query: 281 IGAVGKTGRGVCELLGVD-TSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLY 339
G +GK+GRG E G+ +I+ + +FGS GG GS+E++ + + + + +
Sbjct: 179 FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCF 238
Query: 340 ATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQ----------KMG 389
+ S P A+ +A G G Q L R+ ++ S L +
Sbjct: 239 SASAPPFLAKADATATA------GELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNR 292
Query: 390 FEVLGDNDSPVMPIMVYNPAK---------VSSFSRECLKQNVAIVTVGFPATPLLLARA 440
+ D SP++ + + + + + L + VA+V+ G L
Sbjct: 293 LVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVP 352
Query: 441 ----RICISASHTKEDLIEALEVISRIGDLV 467
R+ +ASHT+ED+ + L V+ + +
Sbjct: 353 PPCLRVVANASHTREDIDKLLTVLGEAVEAI 383
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 125 bits (315), Expect = 1e-31
Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 26/332 (7%)
Query: 147 LHNE-----LEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNG 201
LH++ E+ +A F G + ++ G+ N +L + + + D H S+ G
Sbjct: 95 LHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEG 154
Query: 202 ARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPE 261
R +GA F+HN HL R QI P ++VV+ +YS G + L +
Sbjct: 155 VRAAGAQAHPFRHNDVDHL----RRQIERHGPG--------IIVVDSVYSTTGTIAPLAD 202
Query: 262 IITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIA 321
I+ I + + +DE+HS+G G G G+ LG+ TS V + + +K+F G I
Sbjct: 203 IVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGL-TSRVHFITASLAKAFAGRAGIIT 261
Query: 322 GSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFF 381
+EL +Y+ + ++++++ P + + ++V+ D + AR+ N+ F
Sbjct: 262 CPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESAD------DRRARLHANARFL 315
Query: 382 RSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARAR 441
R L ++G+ + +S ++ + + ++NV PATP R
Sbjct: 316 REGLSELGYNIRS--ESQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIR 373
Query: 442 ICISASHTKEDLIEALEVISRIGDLVGIKYFP 473
+ ++A T DL LEV D V + ++
Sbjct: 374 LSLNADLTASDLDRVLEVCREARDEVDLWFWK 405
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 123 bits (310), Expect = 1e-30
Identities = 103/392 (26%), Positives = 173/392 (44%), Gaps = 54/392 (13%)
Query: 103 LNLGSYNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKP 162
L L S+ + AAA+ + K+Y S + G H LE +A K
Sbjct: 113 LGLSSHPTISNAAAN---------AAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKE 163
Query: 163 AAIVFGMGYVTNSSILPVLMGKGSL--------------IISDSLNHNSIVNGAR----G 204
+V G+ N + + + SL I SD+LNH SI++G R
Sbjct: 164 DCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQ 223
Query: 205 SGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIIT 264
+ V++H HL +L + K+ +VV + ++SM+G+ + E+
Sbjct: 224 GNVEVFVYRHCDMYHLNSLL----------SSCKMKRKVVVTDSLFSMDGDFAPMEELSQ 273
Query: 265 ICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSK 324
+ K+Y +D+AH G+ G GV E + +DVD+ +GT SK+ G +GG+IA SK
Sbjct: 274 LRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCHGGFIACSK 332
Query: 325 ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSK 384
+ Q ++ + +++T+I P A +A VV+ R R++E F+
Sbjct: 333 KWKQLIQSRGRSFIFSTAIPVPMAAAAYAA--VVVARKEKWRRKAIWERVKE----FK-- 384
Query: 385 LQKMGFEVLG-DNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARIC 443
+ G D SP++ ++V N K SR LK ++ + P P R R+
Sbjct: 385 ------ALSGVDISSPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVT 438
Query: 444 ISASHTKEDLIEALEVISRIGDLVGIK-YFPA 474
+SA+HT ED+ + + +S D Y P+
Sbjct: 439 LSAAHTTEDVKKLITALSSCLDFDNTATYIPS 470
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 106 bits (266), Expect = 3e-25
Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 11/241 (4%)
Query: 136 CSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNH 195
SR G +L ++LE +A F G P A + GY+ N + L ++ D H
Sbjct: 46 GGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQVH 105
Query: 196 NSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE 255
S+V + F+HN HLE +L R I + V +YS +G
Sbjct: 106 ISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQRSFGR-------IFIFVCSVYSFKGT 158
Query: 256 LCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS 315
L L +II + K+Y A+ +DEAH++G G G+G C LG + + ++ T+SK+ GS
Sbjct: 159 LAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYE--NFYAVLVTYSKALGS 216
Query: 316 YGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIR 375
G + S E+ Q L N P Y+T + P I A + E R ++L R++
Sbjct: 217 MGAALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELAR--KQLFRLK 274
Query: 376 E 376
E
Sbjct: 275 E 275
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 92.4 bits (230), Expect = 3e-20
Identities = 84/370 (22%), Positives = 154/370 (41%), Gaps = 49/370 (13%)
Query: 103 LNLGSYNYLGFAAADEYCTPRVI----DSLKKYS---HSTCSSRVDGGTLALHNELEECV 155
+N S +YLG D + P +I D+LK+ S+ +RV + +LEE +
Sbjct: 49 VNFVSCSYLGL---DTH--PAIIEGAVDALKRTGSLHLSSSRTRVR---SQILKDLEEAL 100
Query: 156 ARFVGKPAAIVFGMGYVTNSSILPVLM------GKGSLIISDSLNHNSIVNGARGSGAT- 208
+ G + + F + ILP+L G ++ D H S+ N +G A
Sbjct: 101 SELFG-ASVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASL-NILKGICADE 158
Query: 209 --IRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITIC 266
+ HN LE++ + K + V +G+YSM G + + E++ +
Sbjct: 159 TEVETIDHNDLDALEDICKTN------------KTVAYVADGVYSM-GGIAPVKELLRLQ 205
Query: 267 KRYKAYTYLDEAHSIGAVGKTGRG-VCELLGVDTSDVDIMMGTFSKSFGSYGGYIA-GSK 324
++Y + Y+D+AH + GK G G V L ++ I+ + K+FG+ GG I G
Sbjct: 206 EKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVIMLGDA 265
Query: 325 ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSK 384
E I+ + ++ S++ A I+++ + I Q+ +++ N F S
Sbjct: 266 EQIELILRYAGPLAFSQSLNVAALGAILASAE--IHLSEELDQLQQ--KLQNNIALFDSL 321
Query: 385 LQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICI 444
+ + P+ I + + +++ L + V FP A RI
Sbjct: 322 IPTEQSG----SFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMF 377
Query: 445 SASHTKEDLI 454
ASHT +++
Sbjct: 378 RASHTNDEIK 387
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 68.1 bits (167), Expect = 2e-12
Identities = 81/402 (20%), Positives = 148/402 (36%), Gaps = 79/402 (19%)
Query: 110 YLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGG-TLALH-----NELEECVARFVG--K 161
YL AA V+D++ +Y ++ G TLA E VARF+
Sbjct: 25 YLDNAAT-SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADS 83
Query: 162 PAAIVFGMGYVTNSSI------LPVLMGKGSLIISDSLNHNSIV----NGARGSGATIRV 211
IVF G T ++ L + G I+ L H+S + A+ +GA +RV
Sbjct: 84 SDEIVFTRG--TTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRV 141
Query: 212 FQ-HNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYK 270
+ + L + I P+T+ +V + + ++ G + + EI + +
Sbjct: 142 IPLDDDGLLDLDALEKLI---TPKTK------LVALSHVSNVTGTVNPVKEIAELAHEHG 192
Query: 271 AYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG----GYIAGSKEL 326
A +D A + G + + V D + + K G G + KEL
Sbjct: 193 ALVLVDAAQAAGHL---------PIDVQELGCDFLAFSGHKWL--LGPTGIGVLYVRKEL 241
Query: 327 IQYLKYNCPAHLYATSISPPAAEQIIS-------------AIQVVIGEDGSCRGAQKL-- 371
++ L+ P I + ++ ++ I IG + ++
Sbjct: 242 LEELE---PFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGM 298
Query: 372 ----ARIRENSNFFRSKLQKM-GFEVLGDNDSPVMPIMVYNPAKVSS--FSRECLKQNVA 424
A RE + + L ++ G E+ G D+ I+ +N + + ++ +A
Sbjct: 299 EAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIA 358
Query: 425 IVTVGFPATPLLL-----ARARICISASHTKED---LIEALE 458
+ A PL A R + +T+ED L+EAL+
Sbjct: 359 VRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALK 400
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 60.4 bits (147), Expect = 6e-10
Identities = 69/336 (20%), Positives = 120/336 (35%), Gaps = 52/336 (15%)
Query: 150 ELEECVARFVG-------KPAAIVFGMGYVTN--SSILPVLMGKGSLIISDSLNHNSIVN 200
EL E +A ++G P IV G S +L L+ G ++ +
Sbjct: 40 ELREAIAEWLGRRGGVDVPPEEIVVTNG-AQEALSLLLRALLNPGDEVLVPDPTYPGYEA 98
Query: 201 GARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVV-----EG-IYSMEG 254
AR +GA + + L A P+T K++ + G + S E
Sbjct: 99 AARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKT-----KLLYLNNPNNPTGAVLSEE- 152
Query: 255 ELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG 314
+L E+ + K++ DEA++ + G L +D + I++ +FSK+FG
Sbjct: 153 ---ELEELAELAKKHGILIISDEAYA--ELVYDGEPPPALALLDAYERVIVLRSFSKTFG 207
Query: 315 SYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKL 371
G GY+ E + L+ Y TS ++ +A +DG +
Sbjct: 208 LPGLRIGYLIAPPEEL--LERLKKLLPYTTSGPSTLSQAAAAAAL----DDGEEHLEELR 261
Query: 372 ARIRENSNFFRSKLQKMGFEVLGDNDSPVMP-----IMVYNPAKVSS--FSRECLKQNVA 424
R R + L+++G V V P + + P R L+ V
Sbjct: 262 ERYRRRRDALLEALKELGPLV------VVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVV 315
Query: 425 IVTVGFPATPLLLARARICISASHTKEDLIEALEVI 460
+ R+ + +E+L EALE +
Sbjct: 316 VRPGSAFG-EGGEGFVRLSFATP--EEELEEALERL 348
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 53.5 bits (129), Expect = 2e-08
Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 16/172 (9%)
Query: 147 LHNELEECVARF--VGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNH-NSIVNGAR 203
ELEE +AR G A+ G N + L L+G G +I D+ H + A
Sbjct: 1 KLEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAE 60
Query: 204 GSGATIRVFQHNTPSHLEEVLREQI-AEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEI 262
+GA + + + + +P ++V+ + G L L EI
Sbjct: 61 LAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVA------LIVITPNTTSGGVLVPLKEI 114
Query: 263 ITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG 314
I K Y +D A + GA + + D++ + K+ G
Sbjct: 115 RKIAKEYGILLLVDAASAGGASP------APGVLIPEGGADVVTFSLHKNLG 160
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 52.2 bits (126), Expect = 2e-07
Identities = 48/198 (24%), Positives = 72/198 (36%), Gaps = 31/198 (15%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHN--------SIVN 200
N LE+ VA GK AA+ G + N L +G +I H + +
Sbjct: 35 NRLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELG 94
Query: 201 GARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE--------GIYSM 252
GA+ LE +R P T ++ +E + S+
Sbjct: 95 GAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTG------LISLENTHNSAGGQVVSL 148
Query: 253 EGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKS 312
E +L EI I + + +LD A A G V E+ TS D + + SK
Sbjct: 149 E----ELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEI----TSYADSVSMSLSKG 200
Query: 313 FGSY-GGYIAGSKELIQY 329
G+ G +AGS + I Y
Sbjct: 201 LGAPVGSVLAGSDDFIAY 218
>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 45.7 bits (109), Expect = 3e-05
Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 37/181 (20%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVL-MGKGSLIISDSLNHNSIVNGARGSGA 207
E+ A ++G A+ G L L +G G +I S + N GA
Sbjct: 37 RRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGA 96
Query: 208 T-----IRVFQHN-TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPE 261
I N P +E + PRT K I+ V + G+ C +
Sbjct: 97 KPVFVDIDPDTLNIDPDLIEAAIT-------PRT----KAIIPV-----HLAGQPCDMDA 140
Query: 262 IITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS----KSFGSYG 317
I+ + KR+ D A + GA K G+ V D+ G FS K+ +
Sbjct: 141 IMALAKRHGLPVIEDAAQAHGATYK-GKKVGSF-----GDI----GAFSFHATKNLTTGE 190
Query: 318 G 318
G
Sbjct: 191 G 191
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 44.6 bits (106), Expect = 8e-05
Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 15/168 (8%)
Query: 304 IMMGTFSKSF--GSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGE 361
I +G+FSK+ G GY+ ELI+ L A + P + Q +A+ +
Sbjct: 292 IYLGSFSKTLAPGLRLGYVVAPPELIEKLL----RLKQAADLGPSSLSQ--AALAAFLLS 345
Query: 362 DGSCRGAQKLARI-RENSNFFRSKLQK---MGFEVLGDNDSPVMPIMVYNPAKVSSFSRE 417
R ++L R + L + + + +
Sbjct: 346 GHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDARELLAA 405
Query: 418 CLKQNVAIVTVG--FPATPLLLARARICISASHTKEDLIEALEVISRI 463
L++ V + +G F A R+ S+ ++E++ E ++ ++ +
Sbjct: 406 ALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP-SEEEIEEGIKRLAAL 452
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 44.2 bits (105), Expect = 9e-05
Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 19/211 (9%)
Query: 261 EIITICKRYKAYTYLDEA-HSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG-- 317
I+ + + + DE + G + EL G D I + +FSK++G G
Sbjct: 187 AIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGAR--DRTITINSFSKTYGMTGWR 244
Query: 318 -GYIAG-SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIR 375
G++ G +ELI L+ Y + P Q AI + G + R
Sbjct: 245 IGWVVGPPEELIAALRK---LKSY-LTSCAPTPAQYA-AIAALNGPQSDEVVEEMREEYR 299
Query: 376 ENSNFFRSKLQKM-GFEVLGDND-SPVMPIMVYNPAKVSSFSRECLKQ-NVAIVT-VGFP 431
E + L ++ G V+ + + + + F+++ L++ VA+V GF
Sbjct: 300 ERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFG 359
Query: 432 ATPLLLARARICISASHTKEDLIEALEVISR 462
P + +S + ++E L EAL ++R
Sbjct: 360 EPP---GEGYVRLSLATSEETLEEALRRLAR 387
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 42.6 bits (101), Expect = 3e-04
Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 52/236 (22%)
Query: 122 PRVIDSLKKYS-------HSTCSSRVDGGTLALHNELEECVARFVGKPAA--IVFGMGYV 172
V+D+L++Y H T A E E VA F+ P+ I+F G
Sbjct: 13 QAVLDALQEYYTDYNGNVHRGVHHLGKEATQAY-EEAREKVAEFINAPSDEEIIFTSG-T 70
Query: 173 TNS------SILPVLMGKGSLIISDS---LNHNSIVNGARGSGATIRVF-----QHNTPS 218
T + S+ L +++++ N A+ +GAT+RV
Sbjct: 71 TEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNGLLDLD 130
Query: 219 HLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEA 278
LE++L PRT+ +V + + ++ G + + EI + Y A +D A
Sbjct: 131 ALEKLLT-------PRTK------LVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAA 177
Query: 279 HSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGSYG-GYIAGSKELIQYLK 331
++G +D + + FS K +G G G + G ++L++ L
Sbjct: 178 QAVGH-----------RPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLP 222
>gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid
transport and metabolism].
Length = 557
Score = 39.6 bits (93), Expect = 0.003
Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 43/154 (27%)
Query: 148 HNELEECVARFVGKPAAIVFGMGY---VTN---SSILPVLM---GKGSLIISDSLNHNSI 198
E +E AR VFG + V N ++ V+ G ++ D H SI
Sbjct: 72 IKEAQELAAR--------VFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSI 123
Query: 199 VNGARGSGATIRVFQHNTPSHL-------------EEVLREQIAEGQPRTRRPWKKIMVV 245
+G +GAT V+ + + L E +L AE K+ V+
Sbjct: 124 HHGLILAGAT-PVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE----------KLAVI 172
Query: 246 VEGIYSMEGELCKLPEIITICKRYKAYTYLDEAH 279
Y +G L +I+ + Y A+ DEAH
Sbjct: 173 TNPTY--DGVCYNLRKIVELLHHYGAWVLYDEAH 204
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 39.5 bits (93), Expect = 0.003
Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 46/225 (20%)
Query: 259 LPEIITICKRYKAYTYLDEAHSIGAVGKTGR-GVCELLGVDTSDVDIMMGTFSKSFGSYG 317
L + +C+++ DE + G+TG+ E GV+ DI+ T K G G
Sbjct: 214 LKALRELCRKHGILLIADEVQT--GFGRTGKMFAFEHFGVE---PDIV--TLGKGLG--G 264
Query: 318 GY----IAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLAR 373
G + G +E++ H +P A ++ ++V+ E L
Sbjct: 265 GLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEG-------LLEN 317
Query: 374 IRENSNFFRSKLQKM--GFEVLGD-------------NDSPVMPIMVYNPAKVSSFSREC 418
E + R +L+++ ++GD D P + + +
Sbjct: 318 AAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKP---PDKELAAKIIKAA 374
Query: 419 LKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRI 463
L++ + + G R+ T+E++ E L+ +
Sbjct: 375 LERGLLLRPSGGNVI-------RLLPPLIITEEEIDEGLDALDEA 412
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life.
Length = 294
Score = 38.4 bits (90), Expect = 0.006
Identities = 35/144 (24%), Positives = 49/144 (34%), Gaps = 28/144 (19%)
Query: 150 ELEECVARFVGKPAAIVFGMGYVTNSSILPVLM---GKGSLIISDSLNHNSIVNGARGSG 206
E +E AR G G T+SS V++ G G I+ D H S++NG SG
Sbjct: 63 EAQELAARAFGAKHTFFLVNG--TSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSG 120
Query: 207 AT-----------IRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE 255
A + P ++ L E P K V+ Y G
Sbjct: 121 AVPVYLKPERNPYYGIAGGIPPETFKKALIE----------HPDAKAAVITNPTY--YGI 168
Query: 256 LCKLPEIITICKRYKAYTYLDEAH 279
L +I+ +DEAH
Sbjct: 169 CYNLRKIVEEAHHRGLPVLVDEAH 192
>gnl|CDD|201705 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain.
Length = 417
Score = 38.2 bits (89), Expect = 0.008
Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 23/161 (14%)
Query: 136 CSSRVDGGTLALHN----ELEECVAR-FVGKPAAIVFGMGYVTNSSILPVLMGKGSLIIS 190
C + V+ G L H+ E ++ AR F + V N ++ + G ++
Sbjct: 52 CIADVELGDLLDHSGPIKEAQKYAARVFGADKSYFVVNGTSGANKTVGMAVCTPGDTVLI 111
Query: 191 DSLNHNSIVNGARGSGATIRVFQHNT----------PSH--LEEVLREQIAEGQPRTRRP 238
D H SI + SGAT V+ T P H EE ++E +AE P
Sbjct: 112 DRNCHKSIHHALMMSGAT-PVYLEPTRNAYGIIGGIPLHEFQEETIKEALAEVPPAK--- 167
Query: 239 WKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAH 279
++ V+ G Y +G + EI+ Y D A
Sbjct: 168 GPRLAVITNGTY--DGTIYNAKEIVDTLGHLSDYILFDSAW 206
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 38.1 bits (89), Expect = 0.009
Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 49/229 (21%)
Query: 254 GELCKLPEIITICKRYKAYTYL--DEAHSIGAVGKTGRGVCELLGVDTSDVD------IM 305
G L E+ + + + DEA+ E + ++ I+
Sbjct: 159 GTLLPREELRALLEALPEGGLVVIDEAY------------IEFSPESSLELLKYPPNLIV 206
Query: 306 MGTFSKSFGSYG---GYIAGSKELIQYLK-----YNCPAHLYATSISPPAAEQIISAIQV 357
+ TFSK+FG G GY + ELI L +N + A +I+ +
Sbjct: 207 LRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYL----- 261
Query: 358 VIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNP-AKVSSFSR 416
+ + RIRE + L+ +G + S ++V P A+ ++ +
Sbjct: 262 ----------EESVERIREERERLYAALKALGLFGV--FPSQANFVLVRVPDAEAAALAE 309
Query: 417 ECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEAL-EVISRIG 464
LK+ I+ + LL RI + + L+ AL EV+ +G
Sbjct: 310 ALLKKG--ILVRDCSSVGLLPGYLRITVGTPEENDRLLAALREVLKGLG 356
>gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
family. The members of this family are probably all
pyridoxal-phosphate-dependent aminotransferase enzymes
with a variety of molecular functions. The family
includes StsA, StsC and StsS. The aminotransferase
activity was demonstrated for purified StsC protein as
the L-glutamine:scyllo-inosose aminotransferase
EC:2.6.1.50, which catalyzes the first amino transfer in
the biosynthesis of the streptidine subunit of
streptomycin.
Length = 362
Score = 38.0 bits (89), Expect = 0.009
Identities = 41/170 (24%), Positives = 59/170 (34%), Gaps = 35/170 (20%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVL-MGKGSLIISDSLNHNSIVNGARGSGA 207
E+ A ++G A+ G L L +G G +I + + N GA
Sbjct: 27 RAFEKAFAAYLGVKHALAVSSGTSALHLALRALGIGPGDEVIVPAFTFVATANAVLQLGA 86
Query: 208 TIRVF------QHN-TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLP 260
T VF +N P+ +E + PRT K IM V + G+ +
Sbjct: 87 TP-VFVDVDPDTYNIDPAAIEAAI-------TPRT----KAIMPV-----HLYGQPADMD 129
Query: 261 EIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS 310
I I + D AH+ GA K G+ V D TFS
Sbjct: 130 AIRAIAAEHGLPVIEDAAHAHGATYK-GKRVGTF-----GD----AATFS 169
>gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase.
Aminoacylation of tRNA(Cys) with Cys, and cysteine
biosynthesis in the process, happens in
Methanocaldococcus jannaschii and several other archaea
by misacylation of tRNA(Cys) with O-phosphoserine (Sep),
followed by modification of the phosphoserine to
cysteine. In some species, direct tRNA-cys
aminoacylation also occurs but this pathway is required
for Cys biosynthesis. Members of this protein catalyze
the second step in this two step pathway, using
pyridoxal phosphate and a sulfur donor to synthesize Cys
from Sep while attached to the tRNA.
Length = 370
Score = 36.7 bits (85), Expect = 0.020
Identities = 56/278 (20%), Positives = 107/278 (38%), Gaps = 44/278 (15%)
Query: 136 CSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNH 195
C R+D T ++ E +A F+G A V +++ L +G ++ D L H
Sbjct: 41 CGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAH 100
Query: 196 NSIVNGARGSGATIRVFQH-NTPSHL--EEVLREQIAEGQPRTRRPWKKIMVV-VEGIYS 251
+ A +G ++ H P + E E I E + + +P ++ V+G Y
Sbjct: 101 YTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEY- 159
Query: 252 MEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSK 311
G L ++ +C+ L+ A+++G + + + + D ++G+ K
Sbjct: 160 --GNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEI---------GADFIVGSGHK 208
Query: 312 SFGSYG--GYIAGSKEL-------IQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGED 362
S + G G + S+E +Y L TS P + S VV
Sbjct: 209 SMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVV---- 264
Query: 363 GSCRGAQKLARIR------ENSNFFRSKLQKMGFEVLG 394
R++ + + +F ++L+ +GF LG
Sbjct: 265 ---------ERVKRWDEEVKKTRWFVAELEDIGFIQLG 293
>gnl|CDD|239509 cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and
sirohydrochlorin iron chelatase (SirB), N-terminal
domain. SirB catalyzes the ferro-chelation of
sirohydrochlorin to siroheme, the prosthetic group of
sulfite and nitrite reductases. CbiX is a
cobaltochelatase, responsible for the chelation of Co2+
into sirohydrochlorin, an important step in the vitamin
B12 biosynthetic pathway. CbiX often contains a
C-terminal histidine-rich region that may be important
for metal delivery and/or storage, and may also contain
an iron-sulfur center. Both are found in a wide range of
bacteria. This subgroup also contains single domain
proteins from archaea and bacteria which may represent
the ancestral form of class II chelatases before domain
duplication occurred.
Length = 101
Score = 32.5 bits (75), Expect = 0.091
Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 416 RECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGIKYFPA 474
E Q + V PL L H KED+ AL V I+Y P
Sbjct: 51 DELAAQGATRIVV----VPLFLLAGG------HVKEDIPAALAAARARHPGVRIRYAPP 99
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 33.8 bits (78), Expect = 0.18
Identities = 51/231 (22%), Positives = 96/231 (41%), Gaps = 51/231 (22%)
Query: 124 VIDSLKKYSHSTCSSRVDGG--TLA-----LHNELEECVARFVGKPAA--IVF------G 168
VID++ +Y + ++ V G TL+ + + E VA+F+ + IVF
Sbjct: 34 VIDAVAEY-YRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTES 92
Query: 169 MGYVTNSSILPVLMGKGSLIISDSLNHNSIVN---GARGSGATIRVFQHNTP-----SHL 220
+ V S L ++IS+ +H +IV A +GAT++ + L
Sbjct: 93 INLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDL 152
Query: 221 EEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHS 280
E++L E +T+ +V + + ++ G + + EI + + A +D A +
Sbjct: 153 EKLLTE-------KTK------LVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQA 199
Query: 281 IGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGSYG-GYIAGSKELIQ 328
+ + VD +D FS K +G G G + G +EL++
Sbjct: 200 VPH-----------MPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLE 239
>gnl|CDD|234269 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
4-aminotransferase. This family of enzymes are
aminotransferases of the pfam01041 family involved in
the biosynthesis of pseudaminic acid. They convert
UDP-4-keto-6-deoxy-N-acetylglucosamine into
UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
acid has a role in surface polysaccharide in Pseudomonas
as well as in the modification of flagellin in
Campylobacter and Helicobacter species.
Length = 380
Score = 33.5 bits (77), Expect = 0.22
Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 19/143 (13%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVLM-----GKGSLIISDSLNHNSIVNGAR 203
EE +A +VG A+ F +S L + G G + + + + N A
Sbjct: 32 PAFEEALAEYVGAKYAVAFNSA----TSALHIACLALGVGPGDRVWTTPITFVATANCAL 87
Query: 204 GSGATIRVFQHNTPS--HLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPE 261
GA + F P +++E E+ K +V V+ G+ +
Sbjct: 88 YCGAKV-DFVDIDPDTGNIDEDALEKKLAAAKGKL---PKAIVPVD----FAGKSVDMQA 139
Query: 262 IITICKRYKAYTYLDEAHSIGAV 284
I + K++ D +H++GA
Sbjct: 140 IAALAKKHGLKIIEDASHALGAE 162
>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The members of this CD are
involved in various biosynthetic pathways for secondary
metabolites. Some well studied proteins in this CD are
AHBA_synthase, protein product of pleiotropic regulatory
gene degT, Arnb aminotransferase and pilin
glycosylation protein. The prototype of this family, the
AHBA_synthase, is a dimeric PLP dependent enzyme.
AHBA_syn is the terminal enzyme of
3-amino-5-hydroxybenzoic acid (AHBA) formation which is
involved in the biosynthesis of ansamycin antibiotics,
including rifamycin B. Some members of this CD are
involved in 4-amino-6-deoxy-monosaccharide D-perosamine
synthesis. Perosamine is an important element in the
glycosylation of several cell products, such as
antibiotics and lipopolysaccharides of gram-positive and
gram-negative bacteria. The pilin glycosylation protein
encoded by gene pglA, is a galactosyltransferase
involved in pilin glycosylation. Additionally, this CD
consists of ArnB (PmrH) aminotransferase, a
4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying
enzyme. This CD also consists of several predicted
pyridoxal phosphate-dependent enzymes apparently
involved in regulation of cell wall biogenesis. The
catalytic lysine which is present in all characterized
PLP dependent enzymes is replaced by histidine in some
members of this CD.
Length = 352
Score = 33.3 bits (77), Expect = 0.23
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 26/95 (27%)
Query: 216 TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYL 275
P +E + PRT K I+ V + G + I+ I KR+
Sbjct: 95 DPELIEAAIT-------PRT----KAIIPV-----HLYGNPADMDAIMAIAKRHGLPVIE 138
Query: 276 DEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS 310
D A ++GA K GR V D G FS
Sbjct: 139 DAAQALGATYK-GRKVGTF-----GD----AGAFS 163
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 33.4 bits (77), Expect = 0.24
Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 40/235 (17%)
Query: 259 LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGG 318
L EI K + A +D S+G L VD +D+ + K+ G+ G
Sbjct: 150 LKEIAKAAKEHGALLIVDAVSSLGGEP---------LKVDEWGIDVAITGSQKALGAPPG 200
Query: 319 --YIAGSKELIQYLKYNCPAHLY--------------ATSISPPAAEQIISAIQVV---I 359
++A S+ ++ ++ Y +T +PP +I A++ I
Sbjct: 201 LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPV--NLIYALREALDLI 258
Query: 360 GEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIM--VYNPAKVSS--FS 415
E+G ++AR R + R+ L+ +G E+ D P + + P V
Sbjct: 259 LEEGL---EARIARHRRLAEALRAGLEALGLELFAD-PERRSPTVTAIKVPEGVDDKKVR 314
Query: 416 RECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGIK 470
R LK+ + G PL RI + ED++ AL + +G+K
Sbjct: 315 RALLKEYGVEIAGGQG--PLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGVK 367
>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase.
This family includes a number of 2-aminoethylphosphonate
aminotransferases, some of which are indicated to
operate in the catabolism of 2-aminoethylphosphonate
(AEP) and others which are involved in the biosynthesis
of the same compound. The catabolic enzyme (PhnW, ) is
known to use pyruvate:alanine as the transfer partner
and is modeled by the equivalog-level TIGR02326. The
PhnW family is apparently a branch of a larger tree
including genes (AepZ) adjacent to others responsible
for the biosynthesis of phosphonoacetaldehyde. The
identity of the transfer partner is unknown for these
enzymes and considering the reversed flux compared to
PhnW, it may very well be different.
Length = 355
Score = 33.5 bits (77), Expect = 0.25
Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 49/176 (27%)
Query: 254 GELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSF 313
G L L I + + + A +D S GA+ + ++ DVD ++ + +K
Sbjct: 139 GILNPLEAIAKVARSHGAVLIVDAMSSFGAIP---------IDIEELDVDALIASANKCL 189
Query: 314 -GSYG-GYIAGSKELIQ-------------YLKYNC-----------PAHLYATSISPPA 347
G G G++ ++L++ Y ++ P H A
Sbjct: 190 EGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVY------A 243
Query: 348 AEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND--SPVM 401
Q + ++ G ++AR R N L+ +GF+ L SP++
Sbjct: 244 FAQALEELEAEGGVPA------RIARYRRNRELLVDGLRALGFQPLLPERWQSPII 293
>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase. Alternate
names: histidinol-phosphate transaminase; imidazole
acetol-phosphate transaminase Histidinol-phosphate
aminotransferase is a pyridoxal-phosphate dependent
enzyme [Amino acid biosynthesis, Histidine family].
Length = 346
Score = 33.0 bits (76), Expect = 0.32
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 254 GELCKLPEIITICKR--YKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSK 311
G L +I + +R A +DEA+ + + LL + ++ I++ T SK
Sbjct: 156 GNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPS---TLPLLA-EYPNL-IVLRTLSK 210
Query: 312 SFGSYG---GYIAGSKELIQYLK-----YNCP 335
+FG G GY + E+I L +N
Sbjct: 211 AFGLAGLRIGYAIANAEIIDALNKVRAPFNLS 242
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 32.6 bits (75), Expect = 0.37
Identities = 40/206 (19%), Positives = 65/206 (31%), Gaps = 43/206 (20%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGAT 208
N LE+ +A GK AA+ G N L G +I H GA
Sbjct: 38 NALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYT----DECGA- 92
Query: 209 IRVFQHNTPSH----------LEEVLREQIAEGQPRTRRPWKKIMVVVEG-------IYS 251
F E+V + P + V+E +Y
Sbjct: 93 PEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTP----LAVLENTATEGGTVYP 148
Query: 252 MEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSD----VDIMMG 307
++ +L I +CK + ++D A A+ LGV VD +
Sbjct: 149 LD----ELEAISAVCKEHGLPLHMDGARLANALVA--------LGVALKTIKSYVDSVSF 196
Query: 308 TFSKSFGSYGGYI-AGSKELIQYLKY 332
+K G+ G I G+++ + +
Sbjct: 197 CLTKGGGAPVGAIVFGNRDFAKRARR 222
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 32.7 bits (75), Expect = 0.40
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 303 DIMMGTFSKSFGSYGGY----IAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVV 358
D+M +F KS G I G KE+++ L PAHL+ T +P + ++ I ++
Sbjct: 270 DLM--SFGKSLAG--GMPMSAIVGRKEIMESL--EAPAHLFTTGANPVSCAAALATIDMI 323
Query: 359 IGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD 395
E R A+K R+ F + K + +GD
Sbjct: 324 EDESLLQRSAEKGEYARK---RFDQWVSK--YNFVGD 355
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 32.7 bits (76), Expect = 0.41
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 19/46 (41%)
Query: 357 VVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
VVIG DGS GA++L + G V+G DND
Sbjct: 98 VVIGGDGSYMGAKRLT--------------EHGIPVIGLPGTIDND 129
>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium
transferase] [Amino acid transport and metabolism].
Length = 395
Score = 32.7 bits (75), Expect = 0.45
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 242 IMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSD 301
++ V Y G L E++ I +D A + LG D
Sbjct: 160 LLKVHSSNYGFTGML-SEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGAD--- 215
Query: 302 VDIMMGTFS--KSFGS-YGGYIAGSKELIQYLKYNC 334
+ +FS K G G I G KELI+ L+ +
Sbjct: 216 ----LVSFSGDKLLGGPQAGIIVGKKELIEKLQSHP 247
>gnl|CDD|215718 pfam00103, Hormone_1, Somatotropin hormone family.
Length = 198
Score = 31.2 bits (71), Expect = 0.81
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 51 LEDFYIRRLYNRVQDCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCL 103
L + I R++++V D R ++ AW + S+D ++ L N+ CL
Sbjct: 124 LLEG-IERIFSKVIDS-ERTINEYYPAWSGLGSLKSSDEDRRLFAFYNLFSCL 174
>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. This group contains proteins that
share the characteristic catalytic and structural
zinc-binding sites of the zinc-dependent alcohol
dehydrogenase family. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine
(His-51), the ribose of NAD, a serine (Ser-48), then the
alcohol, which allows the transfer of a hydride to NAD+,
creating NADH and a zinc-bound aldehyde or ketone. In
yeast and some bacteria, the active site zinc binds an
aldehyde, polarizing it, and leading to the reverse
reaction.
Length = 332
Score = 31.5 bits (72), Expect = 0.82
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 422 NVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVIS--RIGDLVGIKY 471
NV L+L RI S S TK D+ EAL+++ +I ++
Sbjct: 257 NVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKIKPVIDRVV 308
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine.
Length = 373
Score = 31.7 bits (73), Expect = 0.85
Identities = 49/196 (25%), Positives = 77/196 (39%), Gaps = 46/196 (23%)
Query: 153 ECVARFVGKPAA--IVFGMGYVTNSSI------LPVLMGKGSLIISDSLNHNS-IVNG-- 201
E VARF+ P+ I+F T +I L G I++ + H+S IV
Sbjct: 50 EKVARFINAPSPDEIIFTRN--TTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQ 107
Query: 202 -ARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE 255
A +GA ++V + LE++L E RT+ +V V + ++ G
Sbjct: 108 LAERTGAKLKVVPVDDDGQLDLEALEKLLTE-------RTK------LVAVTHVSNVLGT 154
Query: 256 LCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSF 313
+ + EI I +D A S G + VD D+ FS K
Sbjct: 155 INPVKEIGEIAHEAGVPVLVDGAQSAGH-----------MPVDVQDLGCDFLAFSGHKML 203
Query: 314 GSYG-GYIAGSKELIQ 328
G G G + G +EL++
Sbjct: 204 GPTGIGVLYGKEELLE 219
>gnl|CDD|213914 TIGR04301, ODC_inducible, ornithine decarboxylase SpeF. Members of
this family are known or trusted examples of ornithine
decarboxylase, all encoded in the immediate vicinity of
an ornithine-putrescine antiporter. Decarboxylation of
ornithine to putrescine, followed by exchange of a
putrescine for a new ornithine, is a proton-motive cycle
that can be induced by low pH and protect a bacterium
against transient exposure to acidic conditions.
Length = 719
Score = 31.2 bits (71), Expect = 1.5
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 44/137 (32%)
Query: 136 CSSRVDGGTLALHNELEECVARFVGKPAAIVFGMG---YVTNSS------ILPVLMGKGS 186
C++ V G L +H E C A+ + AA VF +V N + +L L+ G
Sbjct: 160 CNADVALGDLLIH-EGAPCDAQ---QHAAKVFNADKTYFVLNGTSASNKVVLNALLTPGD 215
Query: 187 LIISDSLNHNSIVNGAR-GSGATIRVFQHNTPSHL-------------------EEVLRE 226
L++ D NH S +GA +GA TP +L EE LRE
Sbjct: 216 LVLFDRNNHKSNHHGALIQAGA--------TPVYLETARNPFGFIGGIDEHCFEEEYLRE 267
Query: 227 QIAEGQP---RTRRPWK 240
I E P + +RP++
Sbjct: 268 LIREVAPERAKEKRPFR 284
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional.
Length = 585
Score = 31.1 bits (70), Expect = 1.7
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 448 HTKEDLIEALEVISRIGDLVGIKYFPAEPKK 478
HTK + E + I R GD+VGI FP + KK
Sbjct: 174 HTKSNFAECYDKIRR-GDIVGIVGFPGKSKK 203
>gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase;
Validated.
Length = 409
Score = 30.6 bits (70), Expect = 1.7
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 22/99 (22%)
Query: 375 RENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSS--FSRECLKQ-NVAIVT-VGF 430
EN+ R L+ GFEV G ++P I V P +SS F + L++ NV GF
Sbjct: 322 MENAKIIREGLESAGFEVYGGVNAPY--IWVKTPDGMSSWDFFDKLLQEANVVGTPGSGF 379
Query: 431 PATPLLLARARIC------ISASHTKEDLIEALEVISRI 463
+SA ++E+++EA+E I +
Sbjct: 380 GP----------SGEGYFRLSAFGSRENVLEAMERIKKA 408
>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase;
Provisional.
Length = 380
Score = 30.8 bits (70), Expect = 1.7
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYL-----KYNCPAHLYATSISPPAAEQIISAI 355
I++ TFSK G G GY A +I+YL YN A ++ AA +
Sbjct: 233 IVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSV---AAEVAACAALSNPKYL 289
Query: 356 QVVIGE 361
+ V
Sbjct: 290 EDVKNA 295
>gnl|CDD|224446 COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large
subunit CoxL/CutL homologs [Energy production and
conversion].
Length = 731
Score = 30.8 bits (70), Expect = 2.0
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 290 GVCELLGVDTSDVDIMMG------TFSKSFGSYGGYIAGS 323
E LG+ DV+++ G S GS G +AGS
Sbjct: 476 IAAEELGIPPDDVEVVHGDTDVPVGGWGSVGSRGTAVAGS 515
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 30.1 bits (68), Expect = 2.8
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 19/48 (39%)
Query: 357 VVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DNDSP 399
VVIG DGS GA +L GF +G DND P
Sbjct: 97 VVIGGDGSYMGAMRLTE--------------HGFPCVGLPGTIDNDIP 130
>gnl|CDD|223941 COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain
L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy
production and conversion / Inorganic ion transport and
metabolism].
Length = 606
Score = 30.3 bits (69), Expect = 2.8
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 19/104 (18%)
Query: 1 MIAIPYFTALTTYFSYGLLFVFGQFRDFFRKILDWWSTDNLQGYAPICLGLEDFYIRRLY 60
+ +P ++ LL++ + + + L D+Y+ +LY
Sbjct: 492 GLNLPLLLSIVGIVLGILLYLKPILKKSILGLFGLY---TLLYN--------DYYLDKLY 540
Query: 61 NRVQDCFGRPLSSAPDAWFD--------VVERYSNDNNKTLKRT 96
V L+ +FD + R + + L+R+
Sbjct: 541 TLVFVKTVALLAGRLWDYFDLTFIDGIVNLGRVTLFSGNGLRRS 584
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 29.9 bits (68), Expect = 3.2
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 33/141 (23%)
Query: 148 HNELEECVARFVGKPAAIVF--GMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGS 205
+ LE+ +A G AA+ F GM + S++L L+ G + +V
Sbjct: 42 VDALEKKLAALEGGEAALAFSSGMAAI--STVLLALLKAG----------DHVVASDDLY 89
Query: 206 GATIRVFQHNTPSH----------LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE 255
G T R+F+ P E L I +P T+ +V VE + +
Sbjct: 90 GGTYRLFERLLPKLGIEVTFVDPDDPEALEAAI---KPETK------LVYVESPTNPTLK 140
Query: 256 LCKLPEIITICKRYKAYTYLD 276
+ + I + + A +D
Sbjct: 141 VVDIEAIAELAHEHGALLVVD 161
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 29.6 bits (67), Expect = 4.0
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 317 GGYIAGSKELIQYLKYNCPAHLYATSIS--------PPAAEQIISAIQVVIGEDGSCRGA 368
GG + SK ++YL + P Y T A+ A+ +G +G +
Sbjct: 234 GGILFRSKSYLKYLSVDAP---YLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIV 290
Query: 369 QKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQN 422
+ EN+ + +L+K+GFE + + PV+ I+ + ++ +
Sbjct: 291 AECM---ENTRYLVEELKKIGFEPVIE---PVLNIVAFEVDDPEEVRKKLRDRG 338
>gnl|CDD|130530 TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA family. This
subfamily is closely related to, yet is distinct from,
uroporphyrinogen decarboxylase (EC 4.1.1.37). It
includes two isozymes from Methanosarcina barkeri of
methylcobalamin--coenzyme M methyltransferase. It also
includes a chloromethane utilization protein, CmuA,
which transfers the methyl group of chloromethane to a
corrinoid protein.
Length = 340
Score = 29.4 bits (66), Expect = 4.1
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 396 NDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVG---FPATPLLLARARICISASHT 449
N SP +M P KV ++E L IV G TPL +A I S
Sbjct: 283 NLSPFSTLMNGTPEKVKKLAKEVLYNGGDIVMPGCDIDWMTPLENLKAMIEACKSIK 339
>gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase;
Provisional.
Length = 359
Score = 29.6 bits (67), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYL 330
I++ TFSK++G GY S+ELI+ L
Sbjct: 215 IVLRTFSKAYGLAALRVGYGIASEELIEKL 244
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 29.2 bits (66), Expect = 4.5
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 18/60 (30%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
AAE + I A+ VVIG DGS GA L + SK Q GF V+G DND
Sbjct: 84 AAENLKKHGIDAL-VVIGGDGSYTGADLLTE------EWPSKYQ--GFNVIGLPGTIDND 134
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 29.2 bits (66), Expect = 4.7
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLAR 373
A E + I + VVIG DGS GAQKL
Sbjct: 83 AVENLKKLGIEGL-VVIGGDGSYTGAQKLYE 112
>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed.
Length = 389
Score = 29.5 bits (67), Expect = 4.8
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 301 DVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQV 357
DV I + T SK+F G + G++ +I+ + HL+ S+ + I A+
Sbjct: 230 DVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINL-LQDHLF-VSLFGAIQDAAIEALL- 286
Query: 358 VIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEV 392
D SC AR N F S +++G+EV
Sbjct: 287 ---SDQSCVAELV-ARYESRRNAFISACREIGWEV 317
>gnl|CDD|143285 cd05877, Ig_LP_like, Immunoglobulin (Ig)-like domain of human
cartilage link protein (LP). Ig_LP_like: immunoglobulin
(Ig)-like domain similar to that that found in human
cartilage link protein (LP). In cartilage,
chondroitin-keratan sulfate proteoglycan (CSPG),
aggrecan, forms cartilage link protein stabilized
aggregates with hyaluronan (HA). These aggregates
contribute to the tissue's load bearing properties.
Aggregates having other CSPGs substituting for aggrecan
may contribute to the structural integrity of many
different tissues. Members of the vertebrate HPLN
(hyaluronan/HA and proteoglycan binding link) protein
family are physically linked adjacent to CSPG genes.
Length = 106
Score = 27.7 bits (62), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 301 DVDIMMGTFSKSFGSYGG 318
DV + +GT KS+GSY G
Sbjct: 39 DVLVAIGTRHKSYGSYQG 56
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 29.1 bits (66), Expect = 5.5
Identities = 45/189 (23%), Positives = 71/189 (37%), Gaps = 48/189 (25%)
Query: 122 PRVIDSLKKYSHSTC---SSRVDGGTLALHNELEEC---VARFVG-KPAAIVFGMGYVT- 173
P V++++ Y SS G A +EE +A+ +G P I+F T
Sbjct: 15 PEVLEAMLPYLTEVFGNPSSLHSFGREA-RKAVEEAREQIAKLLGADPEEIIF-----TS 68
Query: 174 ------NSSILPVL-----MGKGSLIISDSLNHNSIVNGAR-----GSGAT-IRVFQHN- 215
N +I KG II+ ++ H +++N R G T + V N
Sbjct: 69 GATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV-DSNG 127
Query: 216 --TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYT 273
LEE LR P T I+V + + G + + EI ICK
Sbjct: 128 LVDLEQLEEALR-------PDT------ILVSIMHANNETGTIQPIAEIGEICKERGILF 174
Query: 274 YLDEAHSIG 282
++D ++G
Sbjct: 175 HVDAVQAVG 183
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 29.1 bits (66), Expect = 5.8
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 19/108 (17%)
Query: 359 IGEDGSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVMPIMV--YNPAKVSSF- 414
G DG RI + + + ++ GFE+LG+ P + ++ P+
Sbjct: 241 FGRDGYGEHID---RIVDLAKYLAELIRADPGFELLGE---PNLSLVCFRLKPSVKLDEL 294
Query: 415 ----SRECLKQNVAIVTVGFPATPLLLARA-RICISASHTKEDLIEAL 457
S ++ V PAT L R ++ T D +AL
Sbjct: 295 NYDLSDRLNERGGWHV----PATTLGGPNVLRFVVTNPLTTRDDADAL 338
>gnl|CDD|148445 pfam06838, Alum_res, Aluminium resistance protein. This family
represents the aluminium resistance protein, which
confers resistance to aluminium in bacteria. Structural
characterisation has shown proteins in this family bind
a pyridoxal-5'-phosphate cofactor, and that they belongs
to the PLP dependent aminotransferase superfamily.
Crystal packing analysis suggests that in solution, a
tetramer may be the stable oligomeric form. This is in
contrast to most other aminotransferases which form
dimers (information from TOPSAN).
Length = 405
Score = 28.8 bits (65), Expect = 6.1
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 31/112 (27%)
Query: 302 VDIMMGTFSKSFG----SYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIIS---- 353
D++ G+ K+ G GGYIAG +EL++ L A I + S
Sbjct: 214 ADLIAGSLIKNPGGGIAKTGGYIAGKEELVE----QASYRLTAPGIGREGGATLGSLREM 269
Query: 354 ------AIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP 399
A VV GE + +GA AR+ L+ +GF VL +
Sbjct: 270 YQGLFLAPHVV-GE--ALKGAHFTARV----------LELLGFPVLPKYNEK 308
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 28.7 bits (65), Expect = 8.0
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 18/46 (39%)
Query: 357 VVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
VVIG DGS GA LA ++ G V+G DND
Sbjct: 99 VVIGGDGSYTGAALLA-------------EEGGIPVVGVPKTIDND 131
>gnl|CDD|205803 pfam13625, Helicase_C_3, Helicase conserved C-terminal domain.
This domain family is found in a wide variety of
helicases and helicase-related proteins.
Length = 128
Score = 27.5 bits (62), Expect = 8.3
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 433 TPLLLARARICISASHTKEDLIEALEVISR 462
TPL L RA A T E++IE LE SR
Sbjct: 42 TPLSLRRAL---DAGLTAEEIIEFLERHSR 68
>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase. This model
describes a methionine gamma-lyase subset of a family of
PLP-dependent trans-sulfuration enzymes. The member from
the parasite Trichomonas vaginalis is described as
catalyzing alpha gamma- and alpha-beta eliminations and
gamma-replacement reactions on methionine, cysteine, and
some derivatives. Likewise, the enzyme from Pseudomonas
degrades cysteine as well as methionine [Energy
metabolism, Amino acids and amines].
Length = 391
Score = 28.7 bits (64), Expect = 8.3
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 302 VDIMMGTFSKSFGSYG----GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQV 357
VD+++ + +K G +G G I G EL+Q ++ + + ISP A I+ ++
Sbjct: 196 VDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT 255
Query: 358 V-IGEDGSCRGAQKLAR 373
+ I A K+A
Sbjct: 256 LNIRMKRHSENAMKVAE 272
>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). This clade includes characterized species
in plants and Chlamydia. Every member of this clade is
from a genome which possesses most of the lysine
biosynthesis pathway but lacks any of the known
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Length = 402
Score = 28.5 bits (64), Expect = 8.5
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 375 RENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSS--FSRECLKQ-NVAIVT-VGF 430
EN+ R L+ GF+V G +P + V P +SS F L + +V GF
Sbjct: 315 MENARILRKALEAAGFKVYGGEHAPY--LWVKTPEGISSWDFFDFLLYEYHVVGTPGSGF 372
Query: 431 PATPLLLARARICISASHTKEDLIEALEVIS 461
+ R SA +E++IEA E I
Sbjct: 373 GPSGEGFVR----FSAFGKRENIIEACERIK 399
>gnl|CDD|234755 PRK00419, PRK00419, DNA primase small subunit; Reviewed.
Length = 376
Score = 28.4 bits (64), Expect = 9.1
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 311 KSFGSYGGYIAGSKELIQYLKYNCPAHLY 339
SF EL YL+ P H+Y
Sbjct: 50 LSFSD-------LGELRDYLRRTAPRHVY 71
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 28.3 bits (64), Expect = 9.3
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 260 PEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDV--DIMMGTFSKSFGSYG 317
PEI IC++Y DE I G+TG E G + D+M T +K S
Sbjct: 243 PEIQRICRKYDILLVADEV--ICGFGRTG----EWFGSQHFGIKPDLM--TIAKGLTS-- 292
Query: 318 GYI 320
GYI
Sbjct: 293 GYI 295
>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS. This model represents
IscS, one of several cysteine desulfurases from a larger
protein family designated (misleadingly, in this case)
class V aminotransferases. IscS is one of at least 6
enzymes characteristic of the IscSUA-hscAB-fsx system of
iron-sulfur cluster assembly. Scoring almost as well as
proteobacterial sequences included in the model are
mitochondrial cysteine desulfurases, apparently from an
analogous system in eukaryotes. The sulfur, taken from
cysteine, may be used in other systems as well, such as
tRNA base modification and biosynthesis of other
cofactors [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Protein synthesis, tRNA and rRNA
base modification].
Length = 402
Score = 28.2 bits (63), Expect = 9.8
Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 38/178 (21%)
Query: 155 VARFVGK-PAAIVFGMGYVTNSSILPV------LMGKGSLIISDSLNHNSIVNGAR---- 203
VA +G IVF G T S+ L + KG+ II+ H ++++ R
Sbjct: 56 VAELIGADSREIVFTSG-ATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLER 114
Query: 204 -GSGATIRVFQHN---TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKL 259
G T + N L+ +R+ I+V + + + G + +
Sbjct: 115 EGFEVTYLPPKSNGLIDLEELKAAIRDD-------------TILVSIMHVNNEIGVIQDI 161
Query: 260 PEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG 317
I IC+ K + ++D A S+G + + V+ VD+M + K +G G
Sbjct: 162 AAIGEICRERKVFFHVDAAQSVGKIP---------INVNELKVDLMSISGHKIYGPKG 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.413
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,402,842
Number of extensions: 2514664
Number of successful extensions: 2513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2422
Number of HSP's successfully gapped: 89
Length of query: 488
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 387
Effective length of database: 6,457,848
Effective search space: 2499187176
Effective search space used: 2499187176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.1 bits)