RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 040324
(488 letters)
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 385 bits (992), Expect = e-131
Identities = 119/405 (29%), Positives = 205/405 (50%), Gaps = 42/405 (10%)
Query: 69 RPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI--- 125
RP+ S D + R R L GS +YLG R+I
Sbjct: 28 RPIQSKQDTEVKIDGR----------------RVLMFGSNSYLGLTTD-----TRIIKAA 66
Query: 126 -DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGK 184
D+L+KY SR GTL +H ELEE ++ +VGK AAI+F G+ +N L LMG+
Sbjct: 67 QDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGR 126
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMV 244
I+ D +H SI++G+R S + + + HN L L ++
Sbjct: 127 NDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRL---------PEDSAKLI 177
Query: 245 VVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDI 304
+GI+SMEG++ LPE+ +I + A +D+AHS+G +G G G G+ DVD+
Sbjct: 178 CTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGL-NDDVDL 236
Query: 305 MMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGS 364
+MGTFSKS S GG++AG ++I +LK+N + +++ S++P + + A++++ E
Sbjct: 237 IMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEP-- 294
Query: 365 CRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVA 424
+ + ++ +N+++ +++L GF+ LG +SP++PI + + K ++ V
Sbjct: 295 ----EHIEKLWKNTDYAKAQLLDHGFD-LGATESPILPIFIRSNEKTFWVTKMLQDDGVF 349
Query: 425 IVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469
+ V PA P + R + A+HT + + EA+E + ++ +
Sbjct: 350 VNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAEV 394
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 374 bits (962), Expect = e-126
Identities = 111/374 (29%), Positives = 183/374 (48%), Gaps = 26/374 (6%)
Query: 101 RCLNLGSYNYLGFAAADEYCTPRVI----DSLKKYSHSTCSSRVDGGTLALHNELEECVA 156
+ LG+YNY+G P VI ++L+K+ TC SR+ GT H E+E+ +
Sbjct: 65 DTILLGTYNYMGMTFD-----PDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALR 119
Query: 157 RFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNT 216
F G AIVF GY+ N I+ L GKG +I D+ +H SI +G + A I F+HN+
Sbjct: 120 DFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 217 PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLD 276
L++ L E +VV+EG+YSM G++ L E++ + K++ A +D
Sbjct: 180 VEDLDKRLGRLPKEP---------AKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVD 230
Query: 277 EAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPA 336
EAHS+G G GRGV E G+ +D ++GTFSKS G+ GG++ + + ++ C
Sbjct: 231 EAHSMGFFGPNGRGVYEAQGL-EGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRP 289
Query: 337 HLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-D 395
+++ S+ P ++I+ ++ +K R+ N+ L+ MGF +
Sbjct: 290 YIFTASLPPSVVATATTSIRKLMTAH------EKRERLWSNARALHGGLKAMGFRLGTET 343
Query: 396 NDSPVMPIMVYNPAKVSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIE 455
DS ++ +M+ + + + + L + + PATP R I A HT +
Sbjct: 344 CDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQT 403
Query: 456 ALEVISRIGDLVGI 469
L + G VG+
Sbjct: 404 VLGMFQAAGRAVGV 417
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 368 bits (947), Expect = e-125
Identities = 114/406 (28%), Positives = 192/406 (47%), Gaps = 40/406 (9%)
Query: 69 RPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI--- 125
R ++SA A V + S +N + NYLG A P +I
Sbjct: 29 RIITSAQQADITVADG---------------SHVINFCANNYLGLANH-----PDLIAAA 68
Query: 126 -DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGK 184
+ + S R GT H ELE+ +A F+G AI++ + N + L+G
Sbjct: 69 KAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGA 128
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMV 244
IISD+LNH SI++G R A + +N LE L+E G + +++
Sbjct: 129 EDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGA-------RHVLI 181
Query: 245 VVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDI 304
+G++SM+G + L + + +Y A +D++H++G VG+ GRG E V VDI
Sbjct: 182 ATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV-MGRVDI 240
Query: 305 MMGTFSKSF-GSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDG 363
+ GT K+ G+ GGY A KE++++L+ +L++ S++P I +++V
Sbjct: 241 ITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGS- 299
Query: 364 SCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNV 423
+ R+ N+ FR ++ GF L D ++P+M+ + F+RE K+ +
Sbjct: 300 -----ELRDRLWANARQFREQMSAAGFT-LAGADHAIIPVMLGDAVVAQKFARELQKEGI 353
Query: 424 AIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469
+ +P P AR R +SA+HT E + A+E +RIG +G+
Sbjct: 354 YVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV 399
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 367 bits (944), Expect = e-124
Identities = 112/406 (27%), Positives = 206/406 (50%), Gaps = 40/406 (9%)
Query: 69 RPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI--- 125
R ++S +A V E+ LN + NYLG A P +I
Sbjct: 28 RIITSPQNAEIKVGEK----------------EVLNFCANNYLGLADH-----PALIKTA 66
Query: 126 -DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGK 184
+++Y S R GT +H ELE+ ++ F+G I++ + N + L+G
Sbjct: 67 QTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGP 126
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMV 244
IISD LNH SI++G R A +++N LE L+E +G + ++
Sbjct: 127 EDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGA-------RFKLI 179
Query: 245 VVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDI 304
+G++SM+G + L I + +Y A +D++H++G +G+ GRG E GV VDI
Sbjct: 180 ATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGV-ADRVDI 238
Query: 305 MMGTFSKSF-GSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDG 363
+ GT K+ G+ GGY +G KE+I++L+ +L++ +++P + ++++ E
Sbjct: 239 LTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGP 298
Query: 364 SCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNV 423
R +++ENS +FR+ ++K+GF+ L + P++P+M+ + ++ + L++ +
Sbjct: 299 QLR-----KQLQENSRYFRAGMEKLGFQ-LVPGNHPIIPVMLGDAQLATNMADHLLQEGI 352
Query: 424 AIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGI 469
+V +P P+ AR R+ +SA HT++ L A+E ++G +G
Sbjct: 353 YVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLGA 398
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 357 bits (918), Expect = e-120
Identities = 75/418 (17%), Positives = 158/418 (37%), Gaps = 30/418 (7%)
Query: 58 RLYNRVQDCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAAD 117
R + + + + D + + + + + + L S +YL A
Sbjct: 17 RGSHMNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANH- 75
Query: 118 EYCTPRVI----DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVT 173
P + SL + S S +E+ +A+F G ++ G+
Sbjct: 76 ----PLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNA 131
Query: 174 NSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQP 233
N +L + + + D H S+ GAR + A F HN HL +++
Sbjct: 132 NVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRH------ 185
Query: 234 RTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCE 293
++VV+ IYS G + L E++ I K + +DE+HS+G G G G+
Sbjct: 186 ------GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLA 239
Query: 294 LLGVDTSDVDIMMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIIS 353
LG+ T +V M + +K+F G I + E+ + + + ++++++ P A + +
Sbjct: 240 ELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLET 298
Query: 354 AIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSS 413
++++ D + + + R L ++G + ++S ++ + +
Sbjct: 299 TLEIIESAD------NRRQHLDRMARKLRIGLSQLGLTI--RSESQIIGLETGDERNTEK 350
Query: 414 FSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVGIKY 471
V PAT R+ +++ E + + +EV S + +
Sbjct: 351 VRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGDFYF 408
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 348 bits (896), Expect = e-117
Identities = 100/400 (25%), Positives = 186/400 (46%), Gaps = 43/400 (10%)
Query: 69 RPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI--- 125
P++ W +R + LN S +YLG + P++I
Sbjct: 24 YPVAQGAGRWLVADDR----------------QYLNFSSNDYLGLSHH-----PQIIRAW 62
Query: 126 -DSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGK 184
+++ + S G +H LEE +A ++G A++F G+ N +++ +M K
Sbjct: 63 QQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAK 122
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMV 244
I +D L+H S++ A S + +R F HN +HL +L + MV
Sbjct: 123 EDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCP----------GQQMV 172
Query: 245 VVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDI 304
V EG++SM+G+ L EI + +++ + +D+AH G +G+ GRG C L V ++
Sbjct: 173 VTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV---KPEL 229
Query: 305 MMGTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGS 364
++ TF K FG G + S + YL +Y+TS+ P A+ + +++ V+ ++G
Sbjct: 230 LVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGD 289
Query: 365 CRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQNVA 424
R ++ FR+ +Q + F L D+ S + P++V + ++ + + +Q
Sbjct: 290 AR----REKLAALITRFRAGVQDLPFT-LADSCSAIQPLIVGDNSRALQLAEKLRQQGCW 344
Query: 425 IVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIG 464
+ + P P AR R+ ++A+H +D+ LEV+ G
Sbjct: 345 VTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG 384
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 319 bits (820), Expect = e-105
Identities = 99/399 (24%), Positives = 178/399 (44%), Gaps = 29/399 (7%)
Query: 79 FDVVERY--SNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVI----DSLKKYS 132
F +ER + + + +YLG P V+ ++L+
Sbjct: 23 FIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQ-----HPVVLAAMHEALEAVG 77
Query: 133 HSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVL--MGKGSLIIS 190
+ +R GT A H LE +A K AA+VF Y N + L L + G +I S
Sbjct: 78 AGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYS 137
Query: 191 DSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY 250
DSLNH S++ G + + R+F+HN +HL E++ ++ E +Y
Sbjct: 138 DSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAAD-----DPAAP----KLIAFESVY 188
Query: 251 SMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS 310
SM+G+ + EI I + + A TY+DE H++G G G GV E G+ +DI GT +
Sbjct: 189 SMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLA 247
Query: 311 KSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQK 370
K++G +GGYIA S ++ ++ P +++TS+ P A ++I + + G +
Sbjct: 248 KAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAE----GQKL 303
Query: 371 LARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFSRECLKQ-NVAIVTVG 429
+ ++ + +L+ +G ++ D+ S ++P+++ +P + S L V + +
Sbjct: 304 RDAQQMHAKVLKMRLKALGMPII-DHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPIN 362
Query: 430 FPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG 468
FP P R R S H + + + + +
Sbjct: 363 FPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARCA 401
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 77.1 bits (190), Expect = 1e-15
Identities = 52/370 (14%), Positives = 115/370 (31%), Gaps = 51/370 (13%)
Query: 121 TPRVIDSLKKYSH--STCSSRVDGGTLALHN-----ELEECVARFVGKPAAIVFGMGYVT 173
T +L ++ S C G + + + +F+G G
Sbjct: 22 TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDV-ARVTNG--A 78
Query: 174 NSSILPVLMG---KGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLE---EVLREQ 227
+ V+ K + ++ D H S A +G I + E +
Sbjct: 79 REAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQT 138
Query: 228 IAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKT 287
I E +R + ++ G L + +I +C Y ++ A++IG
Sbjct: 139 IEE---TKKRGEVVL-ALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR---- 190
Query: 288 GRGVCELLGVDTSDVDIMMGTFS--KSFGSYG--GYIAGSKELIQYLKYNCPAHLYATSI 343
+ V ++ S KS + G G + +E + + +
Sbjct: 191 -------MPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKY----KN 239
Query: 344 SPPAAEQIISAIQVVIGEDGSCRGAQK-LARIR---ENSNFFRSKLQKMGFEVLGD--ND 397
+ +I S ++ + R E + F ++++K+G + LGD ++
Sbjct: 240 KEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHN 299
Query: 398 SPVMPIMVYNPAKVSSFSREC--LKQNVAIVTVGFPATPLLLARARICISASHTKED--- 452
+M ++S ++ P L ++ + + E+
Sbjct: 300 HDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKL-STYGLSDEEVDY 358
Query: 453 LIEALEVISR 462
++ A + I
Sbjct: 359 VLNAFKEIIE 368
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 3e-10
Identities = 69/443 (15%), Positives = 125/443 (28%), Gaps = 166/443 (37%)
Query: 100 SRCLNL--GSYNY-------LGFAAADEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNE 150
+R L L GS + F A+ L++ + +G A +E
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQ----------LQEQFNKILPEPTEG--FAADDE 53
Query: 151 LE---ECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGA 207
E V +F +GYV+ S + P +G+ +++ L
Sbjct: 54 PTTPAELVGKF----------LGYVS-SLVEPSKVGQFDQVLNLCLTE------------ 90
Query: 208 TIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKI-MVVVEGIYSMEGELCKLPEIITIC 266
F++ L I + + + + L K E+I
Sbjct: 91 ----FENC-------YLEG-------------NDIHALAAKLLQENDTTLVKTKELI--- 123
Query: 267 KRYKAYTYLDEAHSIGAVGKTGRGVCELL-GVDTSDVDIMMGTFSKSFGSYGG------Y 319
K Y A + + L V + ++ F GG Y
Sbjct: 124 ---KNY-I--TARIMAKRPFDKKSNSALFRAVGEGNAQLVA-IF-------GGQGNTDDY 169
Query: 320 IAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSN 379
+EL LY T +I + +L R ++
Sbjct: 170 F---EEL---------RDLYQTY--HVLVGDLIKFSAETL---------SELIRTTLDAE 206
Query: 380 FFRSKLQKMGFEVLG---------DND----SPV-MPIMV-------YNPAKVSSFSREC 418
++ G +L D D P+ P++ AK+ F+
Sbjct: 207 KVFTQ----GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 419 LKQNVAIVTVGFPATPLLLARARICISASHTKEDLIE----ALEVISRIGDLVGIKYFP- 473
L+ + T + L+ A A I+ + + E A+ V+ IG + + +P
Sbjct: 263 LRSYLKGATG--HSQGLVTAVA---IAETDSWESFFVSVRKAITVLFFIG-VRCYEAYPN 316
Query: 474 --AEPKKQQQ---VG------ML 485
P + ML
Sbjct: 317 TSLPPSILEDSLENNEGVPSPML 339
Score = 48.9 bits (116), Expect = 3e-06
Identities = 44/191 (23%), Positives = 66/191 (34%), Gaps = 56/191 (29%)
Query: 337 HLYATSISPPAAEQI-------------ISAIQVVIGEDGSCR---GAQKLARIRENSNF 380
LY TS AA+ + S + +VI + G +K RIREN
Sbjct: 1634 DLYKTS---KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN--- 1687
Query: 381 FRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFS----RECLK--QN--VAIVTVGFPA 432
M FE + D I +S++ + L Q A+ + A
Sbjct: 1688 ----YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 433 TPLLLARARI---CISASHTKEDLIE--AL----EVISRIGDLV------GIKYFPAEPK 477
L ++ I A H+ L E AL +V+S I LV G+ A P+
Sbjct: 1744 FEDLKSKGLIPADATFAGHS---LGEYAALASLADVMS-IESLVEVVFYRGMTMQVAVPR 1799
Query: 478 KQQ---QVGML 485
+ GM+
Sbjct: 1800 DELGRSNYGMI 1810
Score = 46.2 bits (109), Expect = 2e-05
Identities = 89/564 (15%), Positives = 149/564 (26%), Gaps = 214/564 (37%)
Query: 15 SYGLLFVFGQFRDFFRKILDWWSTDNLQG----YAPICLGLEDF--YI-RRLYNRVQDCF 67
F+ Q ++ F KIL T+ P L + F Y+ + F
Sbjct: 23 PTASFFIASQLQEQFNKILP-EPTEGFAADDEPTTPAEL-VGKFLGYVSSLVEPSKVGQF 80
Query: 68 GRPLSSAPDAWFD-----------VVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAA 116
+ L+ F+ + + +N+ TL +T + + NY A
Sbjct: 81 DQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKELIK-------NY--ITAR 130
Query: 117 DEYCTPRVIDSLKKYSHSTCSSRVDGGTLALHNELEECVARFVGKPAAIVFGMGYVTNSS 176
R K S+S AL + E A+ V AI FG
Sbjct: 131 --IMAKR---PFDKKSNS-----------ALFRAVGEGNAQLV----AI-FG-------- 161
Query: 177 ILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTR 236
G+G NT + EE LR+
Sbjct: 162 ------GQG-----------------------------NTDDYFEE-LRDLYQTYHV--- 182
Query: 237 RPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYT-------------------YLDE 277
+V + I L +L ++ +T YL
Sbjct: 183 -------LVGDLIKFSAETLSELIRTTLDAEKV--FTQGLNILEWLENPSNTPDKDYLLS 233
Query: 278 AH-SIGAVGKTGRG----VCELLGVDTSDV-DIMMGTFSKSFG-----------SYGGYI 320
S +G +LLG ++ + G S G S+ +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 321 AGSKELIQYLKY-NCPAHLYATSISPPAAEQIISAIQVVIGEDG-----SCRG---AQKL 371
++ I L + + + S P + I + E S Q
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPS---ILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 372 ARIRE----------------NS--NF-----------FRSKLQKMGFEVLGDNDSPVMP 402
+ + N N L+K + D +P
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA--KAPSGLDQSRIP 408
Query: 403 IMVYNPAKVSSFSRECLKQNVAIVTVGF------PATPLL---LARARICISAS------ 447
++ K+ FS L V F PA+ L+ L + + +A
Sbjct: 409 ---FSERKL-KFSNRFLP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 448 -HTK--EDL-IEALEVISRIGDLV 467
T DL + + + RI D +
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCI 483
Score = 37.7 bits (87), Expect = 0.008
Identities = 65/358 (18%), Positives = 110/358 (30%), Gaps = 141/358 (39%)
Query: 168 GMG---YVTNSSILPV-------LMGKGSLIISDSLNHN----SIVNGARGSGATIRVFQ 213
GMG Y T+ + V I D + +N +I G G IR
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-GKRIR--- 1685
Query: 214 HNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEG-IYSMEGELCKL-----PEIIT--- 264
N + + E I +G+ +T + +K+I + E L P +
Sbjct: 1686 ENYSAMI----FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 265 -ICKRYKAYTYLDE----A-HSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGG 318
+ K+ + A HS+G E
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLG----------E------------------------- 1766
Query: 319 YIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENS 378
Y A L A L A +S I S ++VV
Sbjct: 1767 YAA--------L-----ASL-ADVMS------IESLVEVV-------------------- 1786
Query: 379 NFFRSKLQKMGFEVLGDNDSPVMPIMV-YNPAKVS-SFSRECLKQNVAIVTVGFPATPLL 436
F+R M V D M+ NP +V+ SFS+E L+ V V T L
Sbjct: 1787 -FYRGMT--MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG---KRTGWL 1840
Query: 437 L------ARARICISASHTKEDLIEALEVISRIGDLVGIKYFPAEPKKQQQVGMLKLE 488
+ + ++A + AL+ ++ + + + K Q++ +++L+
Sbjct: 1841 VEIVNYNVENQQYVAAGD-----LRALDTVTNV-----LNFI-----KLQKIDIIELQ 1883
Score = 34.3 bits (78), Expect = 0.10
Identities = 43/259 (16%), Positives = 75/259 (28%), Gaps = 77/259 (29%)
Query: 42 QGYAPICLGLEDFY-----IRRLYNR----VQDCFGRPLSSAPDAWFDVVERYSNDNNKT 92
QG +G+ D Y + ++NR +D +G + D+V +N
Sbjct: 1624 QGSQEQGMGM-DLYKTSKAAQDVWNRADNHFKDTYGFSIL-------DIVI----NNPVN 1671
Query: 93 LKRTNNVSRCLNLGSYNYLGF---AAADEYCTPRVIDSLKKYSHSTCSSRVDGGTL---- 145
L + + NY D I ++ + R + G L
Sbjct: 1672 LTIHFGGEKGKRIRE-NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 146 -----------ALHNELEECVARFVGKPAAIVFG--MG-Y---VTNSSILPVLMGKGSLI 188
A +L+ + + A G +G Y + + ++
Sbjct: 1731 FTQPALTLMEKAAFEDLKS---KGLIPADATFAGHSLGEYAALASLADVMS--------- 1778
Query: 189 ISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQ-----IAEGQPRTRRPWKKIM 243
I + +V RG Q P E+ R I G+ + +
Sbjct: 1779 IESLV---EVVF-YRG-----MTMQVAVPRD--ELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 244 VVVEGIYSMEGELCKLPEI 262
VVE + G L EI
Sbjct: 1828 YVVERVGKRTGWLV---EI 1843
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 1e-09
Identities = 66/458 (14%), Positives = 129/458 (28%), Gaps = 148/458 (32%)
Query: 14 FSYG-LLFVFGQFRDFFRKILDWWSTDNLQGYAPICLGLEDFYIRRLYNR-VQDCFGRP- 70
+ Y +L VF D F D C ++D L +
Sbjct: 16 YQYKDILSVF---EDAFVDNFD-------------CKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 71 LSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYLGFAAADEYCTPRVIDSLKK 130
S F + + +++ V L + +Y +L E P S+
Sbjct: 60 AVSGTLRLFWTLLSK---QEEMVQKF--VEEVLRI-NYKFLMSPIKTEQRQP----SMMT 109
Query: 131 YSHSTCSSRVDGGT----------LALHNELEECVARFVGKPAA--IVFGM-GYVTNSSI 177
+ R+ L + +L + + +PA ++ G+ G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLG------- 160
Query: 178 LPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVL------------- 224
GK + + D + + + N+P + E+L
Sbjct: 161 ----SGKTWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 225 --------REQIAEGQPRTRR-----PWKKIMVVVEGIYSMEGELCKLPEIITICKRYKA 271
+ +I Q RR P++ ++V+ + + +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--------AKAW-------- 259
Query: 272 YTYLDEAHSIGAVGKTGRGVCELLGVDTSD---VDIMMGTFSKSF----GSYGGYIAGSK 324
A ++ C++L + T D + + S K
Sbjct: 260 -----NAFNLS---------CKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 325 ELIQYLKY-NCPAH---LYATSISPPAAEQIISAIQVVIGE---DGSCR-------GAQK 370
L+ LKY +C + +P + +S +I E DG K
Sbjct: 305 SLL--LKYLDCRPQDLPREVLTTNP----RRLS----IIAESIRDGLATWDNWKHVNCDK 354
Query: 371 LARIRENS-NFFRSKLQKMGFEVLG--DNDSPVMPIMV 405
L I E+S N + F+ L + + P ++
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTIL 391
Score = 44.8 bits (105), Expect = 6e-05
Identities = 65/372 (17%), Positives = 111/372 (29%), Gaps = 104/372 (27%)
Query: 122 PRVIDSLKKYSHSTCSSRVDGGTLALHNEL----EECVARFVGKPAAIVFG--MGYVTNS 175
P+ I S ++ H S GTL L L EE V +FV + I + M +
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 176 SILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVF-QHNTPS-HLEEVLREQIAEGQP 233
P +M + + I + + N +VF ++N LR+ + E +P
Sbjct: 102 QRQPSMMTR--MYIE---QRDRLYND-------NQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 234 RTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCE 293
V+++G + G GKT
Sbjct: 150 AKN-------VLIDG---VLG-----------------------------SGKT---WVA 167
Query: 294 LLGVDTSDVDIMM--GTFSKSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQI 351
L + V M F + + + +++ L+ L I P +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNS----PETVLEMLQ-----KLL-YQIDPNWTSR- 216
Query: 352 ISAIQVVIGEDGSCRGAQKLARIREN-SNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAK 410
D S ++ I+ +SK + VL N V N
Sbjct: 217 ---------SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LN--------VQNAKA 258
Query: 411 VSSFSRECLKQNVAIVTVGFPATPLLLARARICISASHTKEDLI--EALEVISRIGDLVG 468
++F+ C + + T T L A IS H L E ++ + +
Sbjct: 259 WNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LD 312
Query: 469 IKYF--PAEPKK 478
+ P E
Sbjct: 313 CRPQDLPREVLT 324
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 57.1 bits (137), Expect = 6e-09
Identities = 27/262 (10%), Positives = 69/262 (26%), Gaps = 41/262 (15%)
Query: 108 YNYLGFAAADEYCTPRVIDSLKKYSHSTCSSRVDG----GTLALHNELEECVARFVGKPA 163
YN + D Y S + + G LE V G
Sbjct: 33 YNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAYAGSENFYHLERTVQELFGFKH 92
Query: 164 AIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQ---------- 213
+ G + + + + G + + + + + + + +
Sbjct: 93 IVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNI 152
Query: 214 ----HNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEG----ELCKLPEIITI 265
L++++ E+ AE + + ++ G + + + +
Sbjct: 153 AFKGDIDLKKLQKLIDEKGAENIA---------YICLAVTVNLAGGQPVSMANMRAVREL 203
Query: 266 CKRYKAYTYLDEAHSIGA--------VGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS-Y 316
+ + + D + G + + E++ S D + K
Sbjct: 204 TEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNI 263
Query: 317 GGYIAG-SKELIQYLKYNCPAH 337
GG++ E+ K +
Sbjct: 264 GGFLCMNDDEMFSSAKELVVVY 285
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 47.3 bits (112), Expect = 7e-06
Identities = 33/217 (15%), Positives = 54/217 (24%), Gaps = 48/217 (22%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNH-----NSIVNGAR 203
L E V G I G +PVL+ K + N + +
Sbjct: 77 YALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ 136
Query: 204 G----SGATIRVFQHNTPSHLE-----------EVLREQIAE-GQPRTRRPWKKIMVVVE 247
G +G T+R E L I E G +V
Sbjct: 137 GHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVP------YIVAT 190
Query: 248 -------G-IYSMEGELCKLPEIITICKRYKAYTYLDEA--------HSIGAVGKTGRGV 291
G S+ L + +I K+Y +D A +
Sbjct: 191 ITSNSAGGQPVSLA----NLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTI 246
Query: 292 CELLGVDTSDVDIMMGTFSKSFGS-YGGYIAGSKELI 327
++ D++ + K GG + +
Sbjct: 247 EQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSF 283
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 46.1 bits (110), Expect = 1e-05
Identities = 52/346 (15%), Positives = 109/346 (31%), Gaps = 74/346 (21%)
Query: 149 NELEECVARFVGKPAAIVFGM--GYVTNSSILPVLMGKGSLIISDSLNHNSI--VNGARG 204
+ + + +P A V + G TN + + +I+ L H S
Sbjct: 52 AKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEA 111
Query: 205 SGATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE------GIYSMEG 254
+G + + +E L E +E + +V + Y+ +
Sbjct: 112 TGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPK------LVYISNTTEVGTQYTKQ- 164
Query: 255 ELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCEL---LGVDTSDVDIMMGTFSK 311
+L +I CK + Y +LD A A+ + D +G +K
Sbjct: 165 ---ELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDM----FYIG-ATK 216
Query: 312 SFGSYGGYI-AGSKELIQYLKYNC--PAHLYATSISPPAAEQ--IISAIQVVIGEDG--- 363
+ G +G + + L ++ L A + ++ V+ +D
Sbjct: 217 AGGMFGEALIILNDALKPNARHLIKQRGALMA---------KGWLLGIQFEVLMKDNLFF 267
Query: 364 -----SCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDS-PVMPIMVYNPAKVSSFSRE 417
S + A L L+ G + + S + PI+ ++ + +
Sbjct: 268 ELGAHSNKMAAILKAG----------LEACGIRLAWPSASNQLFPIL--ENTMIAELNND 315
Query: 418 CLKQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRI 463
V + G R+C S + +++ +EV+ R+
Sbjct: 316 FDMYTVEPLKDGTCI-------MRLCTSWATEEKECHRFVEVLKRL 354
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 45.6 bits (107), Expect = 2e-05
Identities = 29/226 (12%), Positives = 62/226 (27%), Gaps = 46/226 (20%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVLM--------GKGSLIISDSLNHNSIVN 200
+L++ I G + + PVL+ K + IS+ + +
Sbjct: 79 YDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAH 138
Query: 201 GARGSGATIRVFQ--------------HNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVV 246
I + L+E + + A+ +V
Sbjct: 139 VELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIV---------AIVS 189
Query: 247 EGIYSMEG----ELCKLPEIITICKRYKAYTYLDEAHSIGA--------VGKTGRGVCEL 294
+ G + L E+ I K++ + +D A + E+
Sbjct: 190 TVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEV 249
Query: 295 LGVDTSDVDIMMGTFSKSFGS-YGGYIA--GSKELIQYLKYNCPAH 337
+ D + + K GG +A ++E+ + C
Sbjct: 250 IFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPM 295
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 44.6 bits (106), Expect = 4e-05
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 27/194 (13%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGARG---- 204
NELE A GK AA+ G + N + +G +I ++ +H I G
Sbjct: 41 NELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSH--IFWYEVGAMAV 98
Query: 205 -SGATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELC-- 257
SG P + + +R + PRT ++ +E ++ G
Sbjct: 99 LSGVMPHPVPGKNGAMDPDDVRKAIRPR-NIHFPRTS------LIAIENTHNRSGGRVVP 151
Query: 258 --KLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS 315
+ EI TI K + ++D A A +G V E D +M SK +
Sbjct: 152 LENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEY----AGYADSVMFCLSKGLCA 207
Query: 316 -YGGYIAGSKELIQ 328
G + G ++ I+
Sbjct: 208 PVGSVVVGDRDFIE 221
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 44.0 bits (104), Expect = 8e-05
Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 44/206 (21%)
Query: 145 LALHNELEECVARFVG-KPAAIVFGMGYVTNSSILPVLM-----------GKGSLIISDS 192
L L +A +G + +V T S L ++ + +I++++
Sbjct: 70 RDLSERLGNRLATLIGARDGEVVVT---DTTSINLFKVLSAALRVQATRSPERRVIVTET 126
Query: 193 LNHNS---IVNG-ARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEG 248
N + I G A + ++P L + + + A +V++
Sbjct: 127 SNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQDTA-------------VVMLTH 173
Query: 249 IYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGT 308
+ G + + + + A D AHS GAV + + + D +G
Sbjct: 174 VNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP---------VDLHQAGADYAIGC 224
Query: 309 FSK--SFGSYG-GYIAGSKELIQYLK 331
K + G ++ S +L +
Sbjct: 225 TYKYLNGGPGSQAFVWVSPQLCDLVP 250
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 42.7 bits (100), Expect = 2e-04
Identities = 40/275 (14%), Positives = 72/275 (26%), Gaps = 43/275 (15%)
Query: 163 AAIVFG---MGYVTN---SSILPVLM---GKGSLIISDSLNHNSIVNGARGSGATIR--- 210
A VF VTN ++ V M GS I+ D H S+ + S T
Sbjct: 204 IARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFR 263
Query: 211 -------VFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEII 263
+ S + + + P P V+ Y +G L I
Sbjct: 264 PTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPV--HAVITNSTY--DGLLYNTDFIK 319
Query: 264 TICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGSYG---- 317
+ D A + + ++ T S K ++
Sbjct: 320 KTLDVKSI--HFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASM 377
Query: 318 ---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARI 374
+ + TS +A ++ G G + +
Sbjct: 378 IHVKGDVNEETFNEAYMM-----HTTTSPHYGIVASTETAAAMMKGN----AGKRLINGS 428
Query: 375 RENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPA 409
E + FR +++++ E G P +
Sbjct: 429 IERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTE 463
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 42.2 bits (100), Expect = 3e-04
Identities = 43/223 (19%), Positives = 70/223 (31%), Gaps = 61/223 (27%)
Query: 269 YKAYTYLDEAHSI----GAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIA 321
Y Y D SI GA +V + +FS G G G+
Sbjct: 240 YAMYMSDDNPRSIFEIPGA----------------EEVAMETASFSNYAGFTGVRLGWTV 283
Query: 322 GSKELIQYLKYNCPA---HLYATSIS-PPAAEQIISAIQVVIGEDGSCRGAQKLARI-RE 376
K+L+ + + T + Q A+ + E K+ +E
Sbjct: 284 IPKKLLYSDGFPVAKDFNRIICTCFNGASNISQA-GALACLTPEGLEA--MHKVIGFYKE 340
Query: 377 NSNFFRSKLQKMGFEVLGDNDSPV--MPIMVYNPAKVSS-FSRECL-KQNVAIVT--VGF 430
N+N +G++V G ++P + P + S E L K +V T GF
Sbjct: 341 NTNIIIDTFTSLGYDVYGGKNAPYVWVHF----PNQSSWDVFAEILEKTHVV-TTPGSGF 395
Query: 431 PATPLLLARARIC------ISASHTKEDLIEALEVISRIGDLV 467
+SA +E+++EA R L
Sbjct: 396 GP----------GGEGFVRVSAFGHRENILEACR---RFKQLY 425
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 40.7 bits (95), Expect = 8e-04
Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 41/228 (17%)
Query: 259 LPEIITICKRYKAYTYLDEA----HSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG 314
++ +A D A H + D DIM+ TFSK G
Sbjct: 174 RETVVNRPDDDEAKVIHDFAYYWPHYTPITRR-------------QDHDIMLFTFSKITG 220
Query: 315 SYG---GY-IAGSKELIQYLKYNCPAHLYATS-ISPPAAEQIISAIQVVIGEDGSCRG-- 367
G G+ + KE+ + + + S S +I++ ++ +
Sbjct: 221 HAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFF 280
Query: 368 AQKLARIRENSNFFRSKLQKMGFEVL-----------GDNDSPVMPIMVYNPAKVSSFSR 416
++ R +++ L G + + +
Sbjct: 281 KYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVS 340
Query: 417 ECLKQNVAIVT-VGFPATPLLLARARICISASHTKEDLIEALEVISRI 463
E + V + + R+ + ++ LE ++ +
Sbjct: 341 ELRRHKVMSRAGERCGSDKKHV---RVSM--LSREDVFNVFLERLANM 383
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 39.3 bits (91), Expect = 0.003
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 20/137 (14%)
Query: 163 AAIVFG---MGYVTN---SSILPVLM---GKGSLIISDSLNHNSIVNGARGSGA------ 207
AA VFG V S ++ +++ D H SI G +GA
Sbjct: 214 AARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMV 273
Query: 208 -TIRVFQHNTPSHLEEV----LREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEI 262
+ + P + +E+ L+++I+E + +K V + +G E
Sbjct: 274 PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEA 333
Query: 263 ITICKRYKAYTYLDEAH 279
+ ++ + DEA
Sbjct: 334 QDLLEKTSDRLHFDEAW 350
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 38.9 bits (91), Expect = 0.003
Identities = 43/284 (15%), Positives = 85/284 (29%), Gaps = 78/284 (27%)
Query: 222 EVLREQIAEGQPRTRRPWKKIMVVVE------GIYSMEGELCKLPEIITICKRYK----- 270
E L A + R + + + E ++ + I KRY
Sbjct: 194 EALENLPALKEGRI-----GAICCSRPTNPTGNVLTDE----EMAHLAEIAKRYDIPLII 244
Query: 271 --AYTYL--DEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSF--GSYGGYIAGSK 324
AY + +S + I+ + SK G G I
Sbjct: 245 DNAYGMPFPNIIYSDAHLNWDNNT-------------ILCFSLSKIGLPGMRTGIIVADA 291
Query: 325 ELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSK 384
++I+ + + ++P I A +V + I+ F++ +
Sbjct: 292 KVIEAVSA---MNAVVN-LAPTRFGAAI-ATPLVANDRIK---QLSDNEIKP---FYQKQ 340
Query: 385 LQKMGFEVLGDNDSPVMPIMVYNP------------AKVSS--FSRECLKQNVAIV--TV 428
++L P+M++ P +S+ + IV
Sbjct: 341 ATLA-VKLL-KQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEY 398
Query: 429 GFPATPLLLARA-----RICISASHTKEDLIEALEVISRIGDLV 467
FP + + R+ I+A ++ LI+ I IG++V
Sbjct: 399 FFPGVDVSDYQHAHECIRMSIAAD--EQTLIDG---IKVIGEVV 437
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 38.7 bits (91), Expect = 0.004
Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 36/173 (20%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQ----YLKYNCPAHLYATSISPPAAEQIISAIQ 356
++ ++SKS G GY+ E+ Y P S Q
Sbjct: 241 LVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYV-CAP------SLFQ 293
Query: 357 VVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMP-----IMVYNPAKV 411
+I + + +EN + L ++G+ P + V
Sbjct: 294 KMIVK--CQGATGDINAYKENRDLLYEGLTRIGYHC-------FKPDGAFYMFVKALEDD 344
Query: 412 SS-FSRECLKQNVAIVT-VGFPATPLLLARARICISASHTKEDLIEALEVISR 462
S+ F + +++V IV GF + RI +E + ++ +
Sbjct: 345 SNAFCEKAKEEDVLIVAADGFGCPGWV----RISYCVD--REMIKHSMPAFEK 391
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 38.3 bits (90), Expect = 0.005
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 23/98 (23%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLK-----YNCPAHLYATSISPPAAEQIISAI 355
++ TFSK+F GY+ S++ I +N + +S A+ +
Sbjct: 195 AVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLPFNV------SYVSQMFAKVALDHR 248
Query: 356 QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL 393
++ ++ I E +S L++MG+ +
Sbjct: 249 EIF---------EERTKFIVEERERMKSALREMGYRIT 277
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 38.3 bits (89), Expect = 0.005
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 20/121 (16%)
Query: 171 YVTN---SSILPVLM---GKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL---- 220
++ N S IL V+ K I+ H S+++ S F S L
Sbjct: 76 FLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEG-HFIETHQSPLTNHY 134
Query: 221 EEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHS 280
+V ++ K++V+ Y GE + E+I + +DEAH
Sbjct: 135 NKVNLSRLNN-------DGHKLVVLTYPNY--YGETFNVEEVIKSLHQLNIPVLIDEAHG 185
Query: 281 I 281
Sbjct: 186 A 186
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 38.0 bits (89), Expect = 0.005
Identities = 44/285 (15%), Positives = 96/285 (33%), Gaps = 65/285 (22%)
Query: 217 PSHLEEVLREQIAEGQPRTRRPWKKIMVVV------EGI-YSMEGELCKLPEIITICKRY 269
P L ++L E ++ K + V G + E + EI + ++Y
Sbjct: 168 PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSE----RKKEIYELARKY 223
Query: 270 K-------AYTYL--DEAH--SIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG- 317
Y +L ++ + ++ GR V I +FSK S G
Sbjct: 224 DFLIIEDDPYYFLQFNKFRVPTFLSMDVDGR------------V-IRADSFSKIISS-GL 269
Query: 318 --GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIR 375
G++ G K LI+ + H+ +++ P Q++ I ++ E G + R+
Sbjct: 270 RIGFLTGPKPLIERVI----LHIQVSTLHPSTFNQLM--ISQLLHEWGEEGFMAHVDRVI 323
Query: 376 ENSNFFRSKLQKMGF---EVLGDNDSPVMP-----IMVYNPAKVSS---FSRECLKQNVA 424
+ F+ ++ + + L +P + + + +K V
Sbjct: 324 D---FYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVL 380
Query: 425 IV--TVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLV 467
++ + + R S++ + E + A + L+
Sbjct: 381 MLPGNAFYVDSSAPSPYLRASFSSA-SPEQMDVA---FQVLAQLI 421
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 38.0 bits (89), Expect = 0.006
Identities = 35/210 (16%), Positives = 63/210 (30%), Gaps = 43/210 (20%)
Query: 149 NELEECVARFVGKPAAI--VFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVN---GA- 202
+++ + + V G N+ L + I +H I N GA
Sbjct: 46 AQVKRKFCEIFERDVEVFLVPT-GTAANALCLSAMTPPWGNIYCHPASH--INNDECGAP 102
Query: 203 --RGSGATIRVFQHN----TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE--------G 248
+GA + L E RE+ T+ V
Sbjct: 103 EFFSNGAKLMTVDGPAAKLDIVRLRERTREK-VGDVHTTQ------PACVSITQATEVGS 155
Query: 249 IYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCEL---LGVDTSDVDIM 305
IY+++ ++ I +CK ++D + A+ G E+ GVD +
Sbjct: 156 IYTLD----EIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDA----LS 207
Query: 306 MGTFSKSFGSYGGYI-AGSKELIQYLKYNC 334
G +K+ I + L + Y
Sbjct: 208 FG-ATKNGVLAAEAIVLFNTSLATEMSYRR 236
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 37.6 bits (88), Expect = 0.007
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 222 EVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSI 281
++L+ I E + + K +++ +Y G K+ EI+ ICK D A ++
Sbjct: 110 DLLKLAIKECEKKP----KALILT--HLY---GNAAKMDEIVEICKENDIVLIEDAAEAL 160
Query: 282 GA 283
G+
Sbjct: 161 GS 162
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 37.3 bits (87), Expect = 0.010
Identities = 12/96 (12%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYAT-SISPPAAEQIISAIQVVI 359
+ +G+ K+F + G G++ G ++++L+ H + + + + +
Sbjct: 240 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRT---VHQNSVFHCPTQSQAAVAESFEREQ 296
Query: 360 GEDGSCRG--AQKLARIRENSNFFRSKLQKMGFEVL 393
Q ++ + LQ +G + +
Sbjct: 297 LLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPI 332
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 36.9 bits (86), Expect = 0.011
Identities = 26/194 (13%), Positives = 52/194 (26%), Gaps = 33/194 (17%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVLM-----GKGSLIISDSLNHNSIVNGAR 203
E+ A +G A+ F G + L + L H + +
Sbjct: 50 EPFEQKFADVLGMDDAVFFPSGTMAQ---QVALRIWSDETDNRTVAYHPLCH--LEIHEQ 104
Query: 204 GSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVE--------GIYSMEGE 255
+ + + ++ + P +++E +
Sbjct: 105 DGLKELHPIETILVGAADRLMTLDEIKALPDIA------CLLLELPQREIGGVAPAFS-- 156
Query: 256 LCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGS 315
+L I C+ +LD A + + E+ D + +F K G
Sbjct: 157 --ELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEI----AGLFDSIYISFYKGLGG 210
Query: 316 YGG-YIAGSKELIQ 328
G +AG Q
Sbjct: 211 IAGAILAGPAAFCQ 224
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 37.2 bits (87), Expect = 0.011
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 21/95 (22%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLK-----YNCPAHLYATSISPPAAEQIISAI 355
++ T SK+F G G+ ++E+I L Y +S P A+ A+
Sbjct: 207 AILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYP---------LSTPVADIAAQAL 257
Query: 356 QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGF 390
G +++A+I + + L+++
Sbjct: 258 S----PQGIVAMRERVAQIIAEREYLIAALKEIPC 288
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 36.5 bits (85), Expect = 0.016
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYAT-SISPPAAEQIISAIQVVI 359
I +G+ K+F G G+ G LI++L+ + + + P + A + I
Sbjct: 233 ITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQT---VQQNSFYTCATPLQAALAEAFWIDI 289
Query: 360 GEDGSCRG--AQKLARIRENSNFFRSKLQKMGFEVL 393
+ + L +G + +
Sbjct: 290 KRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPI 325
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 36.8 bits (85), Expect = 0.017
Identities = 34/240 (14%), Positives = 83/240 (34%), Gaps = 42/240 (17%)
Query: 259 LPEIITICKRYKAYTYLDEAHSIGAV----GKTGRGVCELL----GVDTSDVDIMMGTFS 310
+PEI + + ++D G + + G V GV + D +
Sbjct: 258 IPEIAALAAEHGIGCHVDAC-LGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYG 316
Query: 311 KSFGSYGGYIAGSKELIQYLKYNCPAHLYATSISP------PAAEQIIS--AIQVVIGED 362
+ G+ + +L+ Y + SP P A + A + +GE+
Sbjct: 317 -AKGT-SVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGA-LSATAWAAMLSLGEE 373
Query: 363 GSCRGAQKLARIRENSNFFRSKLQKM-GFEVLGDNDSPVMPIMVYNPAKVSSF--SRECL 419
G RI + ++ ++ ++ + ++LG + ++ +++ + E
Sbjct: 374 G---YLDATRRILQAADRLKAGVRAIPSLKILG----DPLWVIAVASDELNIYQVMEEMA 426
Query: 420 KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISRIGDLVG-IKYFPAEPKK 478
+ + + P + ++ HT+ +++ + DL + A P+K
Sbjct: 427 GRGWRLNGLHRPPA------FHVALTLRHTEPGVVDRF-----LADLQDAVAQVRAHPEK 475
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 36.1 bits (84), Expect = 0.022
Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 45/190 (23%)
Query: 301 DVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYA------TSISPPAAEQI 351
+V I +FSK G G G+ K L A S Q
Sbjct: 272 EVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIV--QA 329
Query: 352 ISAIQVVIGEDGSCRGAQKLARI-RENSNFFRSKLQKMGFEVLGDNDSPV--MPIMVYNP 408
+ + E + + +EN+ ++ +MGF V G +D+P + P
Sbjct: 330 -GGLACLQPEGLKE--MNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGF----P 382
Query: 409 AKVS-SFSRECLKQ-NVAIVT--VGFPATPLLLARARIC------ISASHTKEDLIEALE 458
K S E L++ N+ T G+ SA ++E+++EA+
Sbjct: 383 GKPSWDVFAEILERCNIV-TTPGSGYGP----------AGEGFVRASAFGSRENILEAVR 431
Query: 459 VISRIGDLVG 468
R + G
Sbjct: 432 ---RFKEAYG 438
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 36.0 bits (84), Expect = 0.023
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 23/98 (23%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLK-----YNCPAHLYATSISPPAAEQIISAI 355
++ T SKS+ G G E+I L YN ++ A +
Sbjct: 207 VVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDHYNL------DRLAQAACVAALRDQ 260
Query: 356 QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL 393
+ ++ RIRE +F ++L+ +G++V+
Sbjct: 261 AYL---------SECCRRIRETREWFTTELRSIGYDVI 289
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 36.1 bits (84), Expect = 0.023
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPP-----AAEQIISAI 355
I +G+ K+F G G+ G + L++ L+ H A + +
Sbjct: 248 ITIGSAGKTFSLTGWKIGWAYGPEALLKNLQM---VHQNCVYTCATPIQEAIAVGFETEL 304
Query: 356 QVVIGEDGSCRG-AQKLARIRENSNFFRSKLQKMGFEVL 393
+ + + + +L R ++ S L ++G
Sbjct: 305 KRLKSPECYFNSISGELMAKR---DYMASFLAEVGMNPT 340
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 36.2 bits (84), Expect = 0.024
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 15/111 (13%)
Query: 249 IYSMEGELCKLPEIITICKRYKAYTYL-DEAHSI----GAVGKTGRGVCELLGVDTSDVD 303
+S + E+ + + + D A+++ + +
Sbjct: 195 TFSEQ----TCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRF 250
Query: 304 IMMGTFSKSF--GSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQII 352
M + SK GS + A SKE I++ +H I P Q+
Sbjct: 251 WFMSSTSKITHAGSGVSFFASSKENIEWYA----SHANVRGIGPNKLNQLA 297
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 35.8 bits (83), Expect = 0.027
Identities = 30/195 (15%), Positives = 64/195 (32%), Gaps = 34/195 (17%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVLM-----GKGSLIISDSLNHNSIVNGAR 203
+ E +A+ +GK +A+ F G + L + + L+H + +
Sbjct: 51 EDFETKIAKILGKQSAVFFPSGTMAQ---QIALRIWADRKENRRVAYHPLSH--LEIHEQ 105
Query: 204 GSGATIRVFQHNTPSHLEEVLR-EQIAEGQPRTRRPWKKIMVVVE--------GIYSMEG 254
++ ++L + I + V++E + + E
Sbjct: 106 DGLKELQQITPLLLGTANQLLTIDDIKSLREPVS------SVLIELPQREIGGQLPAFE- 158
Query: 255 ELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG 314
+L +I C +LD A + E+ + D + +F K G
Sbjct: 159 ---ELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEI----CALFDSVYVSFYKGIG 211
Query: 315 SYGG-YIAGSKELIQ 328
G +AG+ + +Q
Sbjct: 212 GIAGAILAGNDDFVQ 226
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 35.7 bits (83), Expect = 0.031
Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 33/151 (21%)
Query: 149 NELEECVARFVGKP---------AAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIV 199
+ E+ + ++G P +A + + +T+ + + G +I+ + + V
Sbjct: 65 DAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTV 124
Query: 200 NGARGSGATIRVF------QHN-TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSM 252
N +G VF +N S +E + +T K IM+
Sbjct: 125 NPTIQNGLIP-VFVDVDIPTYNVNASLIEAAVS-------DKT----KAIMIA-----HT 167
Query: 253 EGELCKLPEIITICKRYKAYTYLDEAHSIGA 283
G L L E+ + +Y + D ++G+
Sbjct: 168 LGNLFDLAEVRRVADKYNLWLIEDCCDALGS 198
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 35.6 bits (83), Expect = 0.034
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYAT-SISPPAAEQIISAIQVVI 359
+G+ K + G G+I G KE + L + + S P + A+++
Sbjct: 215 FTVGSAGKRLEATGYRVGWIVGPKEFMPRLAG---MRQWTSFSAPTPLQAGVAEALKLAR 271
Query: 360 GEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL 393
E + R R + L+ MG V
Sbjct: 272 REGFYEALREGYRRRR---DLLAGGLRAMGLRVY 302
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 35.5 bits (82), Expect = 0.035
Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 35/131 (26%)
Query: 302 VDIMMGTFSKSFG----SYGGYIAGSKELIQYLKYNCPAHLYATSI------SPPAAEQI 351
DI+ G+ K+ G GGYIAG + L+ Y L I S + ++
Sbjct: 218 ADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGY----RLTTPGIGREAGASLYSLLEM 273
Query: 352 I----SAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP----VMPI 403
A V + +GA+ A + L + G E D+P + +
Sbjct: 274 YQGFFLAPHVTA---QAIKGARFTAAM----------LAEFGVEADPVWDAPRTDLIQSV 320
Query: 404 MVYNPAKVSSF 414
+N K+ +F
Sbjct: 321 SFHNKEKMVAF 331
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 35.4 bits (82), Expect = 0.037
Identities = 32/237 (13%), Positives = 68/237 (28%), Gaps = 39/237 (16%)
Query: 259 LPEIITICKRYKAYTYLDEA-HSI---GAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFG 314
L I + ++ D A + G + + + +D I+ + SK+F
Sbjct: 204 LRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFS 263
Query: 315 SYG---GYIAGSKELI--------------QYLKYNCPAHLYATSISPPAAEQI--ISAI 355
G G + S +L ++ + + LYA S + Q + +
Sbjct: 264 YAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAML 323
Query: 356 QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP-------VMPIMVYNP 408
+ DG + + + GF ++ D D + Y
Sbjct: 324 KAC--NDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTV-GYKG 380
Query: 409 AKVSSFSRECL-KQNVAIVT-VGFPATPLLLARARICISASHTKEDLIEALEVISRI 463
S + + AI RIC ++ + + + + +
Sbjct: 381 MDSSKLIEKFVRYGMCAITLKTTGSKRN---EAMRIC-TSLLPESQFPDLEKRLQML 433
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 35.0 bits (81), Expect = 0.048
Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 27/185 (14%)
Query: 298 DTSDVDIMMGTFSKSF--GSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAI 355
D + + SK G+ G++A S++ I++L +L A SI P EQ +
Sbjct: 240 GYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLS----KYLGAQSIGPNKVEQAR-HV 294
Query: 356 QVVIGEDGSCRG--AQKLARIRENSNFFRSKLQKM--GFEVLGDNDSPVMP-----IMVY 406
+ + G G A I FR+ + + G+ + +P I +
Sbjct: 295 KFLTEYPGGLEGLMRDHAAIIAP---KFRAVDEVLRAELGEGGEYATWTLPKGGYFISLD 351
Query: 407 NPAKVSS-FSRECLKQNVAIVTVG--FPATPLLLARA-RICISASHTKEDLIEALEVISR 462
V+ + V++ G +PA R R+ + E++ A +
Sbjct: 352 TAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTA---MQV 407
Query: 463 IGDLV 467
+ +
Sbjct: 408 VAACI 412
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 34.9 bits (81), Expect = 0.053
Identities = 19/185 (10%), Positives = 57/185 (30%), Gaps = 38/185 (20%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIG 360
I+ + SK G G G I + + I + + S++P + +++
Sbjct: 243 ILCMSLSK-LGLPGSRCGIIIANDKTITAIA---NMNGII-SLAPGGMGPAM-MCEMI-- 294
Query: 361 EDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYNPA----------- 409
+ + I+ F+ ++Q+ ++ +++ P
Sbjct: 295 KRNDLLRLSE-TVIKP---FYYQRVQQT-IAII-RRYLSEERCLIHKPEGAIFLWLWFKD 348
Query: 410 -KVSS--FSRECLKQNVAIV--TVGFPATPLLLARARICI--SASHTKEDLIEALEVISR 462
+++ + + V +V FP C+ + + + +
Sbjct: 349 LPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAG---VKI 405
Query: 463 IGDLV 467
+ + +
Sbjct: 406 LAEEI 410
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 34.9 bits (81), Expect = 0.057
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 23/98 (23%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLK-----YNCPAHLYATSISPPAAEQIISAI 355
++ T SK+F G GY + I + Y+ +++S AA +
Sbjct: 224 VVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLPYHL------SALSQAAAIVALRHS 277
Query: 356 QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL 393
+ ++ ++L+++G+ V+
Sbjct: 278 ADT---------LGTVEKLSVERVRVAARLEELGYAVV 306
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 34.1 bits (79), Expect = 0.10
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYAT-SISPPAAEQIISAIQVVI 359
+ + +F K++ G GY + ++ H Y T S++ PA + ++
Sbjct: 229 VAVSSFGKTYHMTGWKVGYCVAPAPISAEIRK---VHQYLTFSVNTPAQLALADMLR--- 282
Query: 360 GEDGSCRG-AQKLARIRENSNFFRSKLQKMGFEVL 393
E + R + + L + E+L
Sbjct: 283 AEPEHYLALPDFYRQKR---DILVNALNESRLEIL 314
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 34.1 bits (79), Expect = 0.10
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYAT-SISPPAAEQIISAIQVVI 359
I + + +K F G G+ G ELI ++ A Y + P + A+
Sbjct: 226 ITISSAAKMFNCTGWKIGWACGPAELIAGVRA---AKQYLSYVGGAPFQPAVALALD--T 280
Query: 360 GEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL 393
+ L R + + L ++GF V
Sbjct: 281 EDAWVAALRNSLRARR---DRLAAGLTEIGFAVH 311
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 33.7 bits (78), Expect = 0.12
Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 43/177 (24%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIG 360
I + + SK++ G G++A + ++ L+ Y I + ++ A +
Sbjct: 215 IAVNSLSKTYSLPGIRIGWVAANHQVTDILR---DYRDYTM-ICAGVFDDLV-AQLAL-- 267
Query: 361 EDGSCRGAQKL-----ARIRENSNFFRSKLQKM-GFEVLGDNDSPVMP-----IMVYNPA 409
Q++ + EN +++ + P V
Sbjct: 268 -----AHYQEILERNRHILEENLAILDQWIEEEPLVSY-------IRPAVVSTSFVKIAV 315
Query: 410 KVSS--FSRECL-KQNVAIVTVGFPATPLLLAR-ARICISASHTKEDLIEALEVISR 462
+ F + L + V +V P R+ + +E LI+ LE +S+
Sbjct: 316 DMPMEDFCLQLLQEHGVLLV----PGNRFERDGYVRLGFACE--QETLIKGLEKLSQ 366
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 33.8 bits (77), Expect = 0.13
Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 37/194 (19%)
Query: 300 SDVDIMMGTFSKSFGSYG---GY-IAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAI 355
+D DI++ T SK G G G+ + + + L T P Q + ++
Sbjct: 240 ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLN---YMTKNTE-GTPRETQ-LRSL 294
Query: 356 QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGD--NDSPVMPIMVYNPAKVSS 413
+V+ ++ + +R+ + F KL++ + + + S ++ +
Sbjct: 295 KVL--KEVVAMVKTQKGTMRDLNTFGFKKLRE-RWVNITALLDQSDRFSYQELPQSEYCN 351
Query: 414 FSRECLKQNVAIVTVGFPATPL-----LLARARIC---------------ISASHTKEDL 453
+ R + + V RI +S T++D
Sbjct: 352 YFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDF 411
Query: 454 IEALEVISRIGDLV 467
+ + + D+V
Sbjct: 412 DQLMY---YLKDMV 422
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 33.6 bits (78), Expect = 0.14
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 29/101 (28%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLK-----YNCPAHLYATSISPPAAEQIISAI 355
++ +FSKS+G G G + G ELI +K N + + +A+
Sbjct: 191 LVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQWFCN---------VGTLDLHALEAAL 241
Query: 356 QVVIGEDGSCRGAQKLARIRENS---NFFRSKLQKMGFEVL 393
++ + A I + L+ +G+ V
Sbjct: 242 -----DN----DRAREAHIAKTLAQRRRVADALRGLGYRVA 273
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 33.3 bits (77), Expect = 0.15
Identities = 33/176 (18%), Positives = 53/176 (30%), Gaps = 41/176 (23%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVLM-------GKGSLIISDSLNHNSIVNG 201
+ E A+ G A++ G N ++ L KG II +++ ++
Sbjct: 37 KQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYP 96
Query: 202 ARGSGATIRVF------QHN-TPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEG 254
+ G + F N L+E + T K I+ V ++ G
Sbjct: 97 LQQYGLRV-KFVDIDINTLNIDIESLKEAVT-------DST----KAILTV-----NLLG 139
Query: 255 ELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFS 310
EI I D S+GA + MGTFS
Sbjct: 140 NPNNFDEINKIIGGRDIILLEDNCESMGATFN-NKCAGTF-----GL----MGTFS 185
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 33.3 bits (77), Expect = 0.16
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 14/107 (13%)
Query: 301 DVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHL-----YATSISPPAAEQII 352
I + +FSK G G G+ +EL + + Q
Sbjct: 226 FCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFN-GASIPAQE- 283
Query: 353 SAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP 399
A + + + RENS+ R L GFEV G +P
Sbjct: 284 -AGVAGLSILPQL---EAIHYYRENSDLLRKALLATGFEVFGGEHAP 326
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 33.3 bits (76), Expect = 0.18
Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 33/193 (17%)
Query: 163 AAIVF--GMGYVTNSSILPVLMGKGSLIISDSLN-HNSIVNGARGSGATIRVFQHNTPSH 219
+ F + + + L K + L H SI + A +
Sbjct: 78 KCVGFNRTSSAI--LATILALKPKKVIHYLPELPGHPSIERSCKIVNAKY----FES-DK 130
Query: 220 LEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAH 279
+ E+ +I T I+ + L ++I K +A ++D+A
Sbjct: 131 VGEI-LNKI---DKDT----LVIITGSTMDLKVIE-LENFKKVINTAKNKEAIVFVDDAS 181
Query: 280 -SIGAVGKTGRGVCELLGVDTSDVDIMMGTFS--KSFGSY-GGYIAGSKELIQYLKYNCP 335
+ + +L G D + S K GG +AG KEL+ +
Sbjct: 182 GARVRLLFNQPPALKL-GAD-------LVVTSTDKLMEGPRGGLLAGKKELVDKIYIE-- 231
Query: 336 AHLYATSISPPAA 348
+ PP
Sbjct: 232 GTKFGLEAQPPLL 244
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 32.9 bits (76), Expect = 0.20
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYL 330
+ +GTFSK +G G GY + +I
Sbjct: 220 LYLGTFSKLYGLGGLRIGYGIANANIISAF 249
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 33.1 bits (76), Expect = 0.21
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 20/69 (28%)
Query: 341 TSISPPAAEQIISAIQ-------VVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVL 393
+S P ++++ ++ +G DG+ RGA +++ +K + + V
Sbjct: 171 SSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQ--------EAKRRGVDISVF 222
Query: 394 G-----DND 397
G DND
Sbjct: 223 GVPKTIDND 231
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 32.9 bits (76), Expect = 0.22
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYL 330
I+ TFSK +G GY KE+I+ L
Sbjct: 218 IITRTFSKIYGLASARVGYGIADKEIIRQL 247
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis;
HET: MSE PMP; 1.80A {Coxiella burnetii}
Length = 374
Score = 32.9 bits (76), Expect = 0.22
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 23/89 (25%)
Query: 233 PRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVC 292
+T K IM V G + +P + I K++ + D +I + V
Sbjct: 124 DKT----KAIMPV-----HYTGNIADMPALAKIAKKHNLHIVEDACQTILGRIN-DKFVG 173
Query: 293 ELLGVDTSDVDIMMGTFS----KSFGSYG 317
FS K+ +
Sbjct: 174 SW-----GQF----ACFSLHPLKNLNVWS 193
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 32.8 bits (75), Expect = 0.23
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 298 DTSDVDIMMGTFSKSF--GSYGGYIAGSKELIQYLKYNCPAHLYATSISPPAAEQII 352
+ + SK G+ + S E ++ H I P Q+
Sbjct: 247 GNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYT----GHAGIRGIGPNKVNQLA 299
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 32.5 bits (75), Expect = 0.25
Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 43/194 (22%)
Query: 259 LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGG 318
+ E+ + RY +D S G + + + +D ++ + +K G
Sbjct: 150 IDEVGALAHRYGKTYIVDAMSSFGGIP---------MDIAALHIDYLISSANKCIQGVPG 200
Query: 319 --YIAGSKELIQYLKYNCPA-----HLYATSIS---------PP-----AAEQIISAIQV 357
++ ++ + K + + + + P A Q + +
Sbjct: 201 FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK 260
Query: 358 VIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIM--VYNPA----KV 411
G R ++N + ++ +GF L D++ PI+ Y+P +
Sbjct: 261 EGGVAAR------HQRYQQNQRSLVAGMRALGFNTLLDDELH-SPIITAFYSPEDPQYRF 313
Query: 412 SSFSRECLKQNVAI 425
S F R +Q I
Sbjct: 314 SEFYRRLKEQGFVI 327
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 32.5 bits (75), Expect = 0.25
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYL 330
I++ TFSK G GY +I +
Sbjct: 206 ILLKTFSKIHAMAGMRVGYAVAHPTVIALM 235
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 32.6 bits (75), Expect = 0.31
Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 45/196 (22%)
Query: 294 LLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQ 350
+ + + +++ TFSK G G +AGSKE I+ + + + PA
Sbjct: 243 IFKIGGPERVVLLNTFSKVLAP-GLRIGMVAGSKEFIRKIV----QAKQSADLCSPAITH 297
Query: 351 IISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYN--- 407
++A + + E ++L E +R K M L + +P + +
Sbjct: 298 RLAA-RYL--ERY--DLLEQLKPTIE---LYRRKRTVM-LNAL-EEYFSDIPGVKWVKSE 347
Query: 408 ---------PAKVSSFS--RECLKQNVAIVTVGFPATPLLLARA-----RICISASHTKE 451
P ++ ++ V V P + R+ E
Sbjct: 348 GGLFIWLTLPEGFDTWEMFEYAKRKKVFYV----PGRVFKVYDEPSPSMRLSFCLP-PDE 402
Query: 452 DLIEALEVISRIGDLV 467
++E I R+ ++V
Sbjct: 403 KIVEG---IKRLREVV 415
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 32.2 bits (74), Expect = 0.34
Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 41/189 (21%)
Query: 298 DTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISA 354
D I +GTFSK G G++ G +I+ ++ +T + Q+++
Sbjct: 276 DNEGRVIYLGTFSKILAP-GFRIGWMVGDPGIIRKME----IAKQSTDLCTNVFGQVVAW 330
Query: 355 IQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMP------------ 402
+ V + G + + IR+ F++ + M E L + MP
Sbjct: 331 -RYV--DGG--YLEKHIPEIRK---FYKPRRDAM-LEALEEF----MPEGVKWTKPEGGM 377
Query: 403 -IMVYNPAKVSSFS--RECLKQNVAIVT-VGFPATPLLLARARICISASHTKEDLIEALE 458
I V P + S +K+ VA V F A + R+ + ++ ++E
Sbjct: 378 FIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYV-DEDKIMEG-- 434
Query: 459 VISRIGDLV 467
I R+ + +
Sbjct: 435 -IKRLAETI 442
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 32.1 bits (74), Expect = 0.36
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 261 EIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD-TSDVDIMMGTFSKSFGSYG-- 317
E + + +++ + D + G L + + + + + SKS+ G
Sbjct: 182 EALGLARKHGLWLIHDNPYV--DQVYEGEAPS-PLALPGAKERVVELFSLSKSYNLAGFR 238
Query: 318 -GYIAGSKELIQYLK 331
G+ GS+E + L+
Sbjct: 239 LGFALGSEEALARLE 253
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 32.0 bits (74), Expect = 0.41
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 24/60 (40%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
+ I + VVIG DGS GA+KL + GF +G DND
Sbjct: 85 GIANLKKLGIEGL-VVIGGDGSYMGAKKLT--------------EHGFPCVGVPGTIDND 129
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 32.0 bits (74), Expect = 0.41
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 24/60 (40%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
EQ+ I A+ VVIG DGS GA +L + GF +G DND
Sbjct: 85 GIEQLKKHGIDAV-VVIGGDGSYHGALQLT--------------RHGFNSIGLPGTIDND 129
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 32.2 bits (74), Expect = 0.42
Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 48/197 (24%)
Query: 294 LLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKELIQYLKYNCPAHLYATSISPPAAEQ 350
L +D I+ GT SK G+ G G+I E+++ + PA Q
Sbjct: 230 LKALDNEGRVIVAGTLSKVLGT-GFRIGWIIAEGEILKKVL----MQKQPIDFCAPAISQ 284
Query: 351 IISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMVYN--- 407
I+ + + G L ++ K M + L ++ +P +
Sbjct: 285 YIALEYL---KRGYFEKYH-LEGALL---GYKEKRDIM-LKALENH----LPNAEFTKPI 332
Query: 408 ---------PAKVSS---FSRECLKQNVAIVTVGFPATPLLLARA-----RICISASHTK 450
P + ++ V +V P P + R+ S +K
Sbjct: 333 AGMFVMFFLPEGADGISFANELMEREGVVVV----PGKPFYTDESGKNAIRLNFSRP-SK 387
Query: 451 EDLIEALEVISRIGDLV 467
E++ I ++ L
Sbjct: 388 EEIPIG---IKKLAKLY 401
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate,
aspartate aminotransferase, O-antigen; HET: G4M; 1.60A
{Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Length = 391
Score = 31.7 bits (73), Expect = 0.47
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 16/67 (23%)
Query: 217 PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLD 276
+ LE ++ PRT K IM V +Y G++C + I+ + +R+ D
Sbjct: 134 AAKLEALIT-------PRT----KAIMPV--HLY---GQICDMDPILEVARRHNLLVIED 177
Query: 277 EAHSIGA 283
A ++GA
Sbjct: 178 AAEAVGA 184
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 31.6 bits (73), Expect = 0.48
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 19/46 (41%)
Query: 357 VVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
VVIG DGS GA +L +MGF +G DND
Sbjct: 99 VVIGGDGSYMGAMRLT--------------EMGFPCIGLPGTIDND 130
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 31.9 bits (73), Expect = 0.50
Identities = 18/169 (10%), Positives = 51/169 (30%), Gaps = 28/169 (16%)
Query: 309 FSKSFGSYG---GYIAG---SKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGED 362
+K F ++G G++ + + L+ + + S P Q V+ ++
Sbjct: 269 ATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSA-VKHVL--KN 325
Query: 363 GSCRGAQKLA-------RIRENSNFFRSKLQKMGFEVLGDNDSPVMPIMV-YNPAKVSSF 414
+ R + ++ N + + + +
Sbjct: 326 NKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSG--YFMAIKVHDVDPEAL 383
Query: 415 SRECL-KQNVAIVTVGFPATPLLLARARICISASHTKEDLIEALEVISR 462
+ + K ++ ++ L RI + K+D+ + I++
Sbjct: 384 RKHLIDKYSIGVI-------ALNATDIRIAF-SCVEKDDIPHVFDSIAK 424
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 31.8 bits (73), Expect = 0.52
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 29/86 (33%)
Query: 261 EIITICKRYK-------AY---TYLDEAHSIGAV--GKTGRGVCELLGVDTSDVDIMMGT 308
E I K AY + + SI A GK DV I + +
Sbjct: 205 EAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGK--------------DVAIEIYS 250
Query: 309 FSKSFGSYG---GYIAGSKELIQYLK 331
SK + G G+ G+K++IQ LK
Sbjct: 251 LSKGYNMSGFRVGFAVGNKDMIQALK 276
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 31.8 bits (73), Expect = 0.53
Identities = 23/160 (14%), Positives = 57/160 (35%), Gaps = 29/160 (18%)
Query: 259 LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGG 318
I CK+ + D V + ++ D+M+ K G
Sbjct: 163 TMMIGEFCKKNNMFFVCD------CV--SAFLADPFN-MNECGADVMITGSQKVLACPPG 213
Query: 319 --YIAGSKELIQYLKYNCPAHLY----------ATSISP--PAAEQIIS---AIQVVIGE 361
I + ++ ++ + +Y +P PA ++ ++ +
Sbjct: 214 ISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKH 273
Query: 362 DGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVM 401
G+ ++ARI + FR+K++ + FE++ ++ + +
Sbjct: 274 GGA---DAEVARIASQAADFRAKIKDLPFELVSESPANGV 310
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 31.7 bits (72), Expect = 0.55
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 302 VDIMMGTFSKSFG----SYGGYIAGSKELIQYLKY 332
D++ G+ K+ G GGY+AG+K+ I+ Y
Sbjct: 235 ADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSY 269
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein,
PSI, protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.80A {Bacillus subtilis}
SCOP: b.58.1.2
Length = 195
Score = 31.1 bits (70), Expect = 0.57
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 146 ALHNELEECVARFVGKPAAIVFGMGYVTNSSILPVLMGKGSLIISDSLNHNSIVNGAR-- 203
+ E +A +G P ILP +G ++ +S + S+ G+R
Sbjct: 71 IVSIEECNEIALKMGVPR-------------ILPEWLGA-NVAVSGMPDLTSLKEGSRII 116
Query: 204 -GSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIY 250
SGA + N P + + QP+ + + + + GI
Sbjct: 117 FPSGAALLCEGENDPCIQPGEVIQSYYPDQPKLASAFVRHALGIRGIV 164
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars,
antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces
venezuelae} PDB: 2oge_A*
Length = 399
Score = 31.4 bits (72), Expect = 0.63
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 23/89 (25%)
Query: 233 PRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVC 292
PRT + ++ V + G + + + R+ + D A + GA + GR +
Sbjct: 150 PRT----RALLPV-----HLYGHPADMDALRELADRHGLHIVEDAAQAHGARYR-GRRIG 199
Query: 293 ELLGVDTSDVDIMMGTFS----KSFGSYG 317
S V FS K+ G +G
Sbjct: 200 AG-----SSV----AAFSFYPGKNLGCFG 219
>2fnu_A Aminotransferase; protein-product complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP:
c.67.1.4 PDB: 2fni_A* 2fn6_A*
Length = 375
Score = 31.3 bits (72), Expect = 0.73
Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 38/149 (25%)
Query: 150 ELEECVARFVGKPAAIVFGMGYVTNSS------ILPVL-MGKG--SLIISDSLNHNSIVN 200
EE + F+G A+VF NS+ + + II+ ++ + N
Sbjct: 36 LFEEALCEFLGVKHALVF------NSATSALLTLYRNFSEFSADRNEIITTPISFVATAN 89
Query: 201 GARGSGATIRVF---QHNT---PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEG 254
SG T VF +++ LE+++ R K I+ V G
Sbjct: 90 MLLESGYTP-VFAGIKNDGNIDELALEKLI----------NERT-KAIVSV-----DYAG 132
Query: 255 ELCKLPEIITICKRYKAYTYLDEAHSIGA 283
+ ++ + +CK++ D +H++G+
Sbjct: 133 KSVEVESVQKLCKKHSLSFLSDSSHALGS 161
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 31.6 bits (72), Expect = 0.74
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 19/69 (27%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLAR---------IRENSNFFRSKLQKMGFEVL 393
A + + I A+ +V G DGS GA + ++ + +
Sbjct: 268 ACKNMIDMGIDAL-IVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNIC 326
Query: 394 G-----DND 397
G DND
Sbjct: 327 GAVGSIDND 335
Score = 30.4 bits (69), Expect = 1.6
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 17/62 (27%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
A + +++G + +L R R N ++ N+
Sbjct: 654 IAYFFEKYGFDGL-ILVGGFEAFISLHQLERARINYPSL-------RIPLVLIPATISNN 705
Query: 398 SP 399
P
Sbjct: 706 VP 707
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 31.3 bits (71), Expect = 0.78
Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 33/132 (25%)
Query: 302 VDIMMGTFSKSFG----SYGGYIAGSKELIQYLKYNCPAHLYATSI--SPPAAEQIISAI 355
D+M G+ K+ G GGYI G ++ ++ Y L + I A+ + +
Sbjct: 224 ADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAY----RLTSPGIGAEAGASLYSLQEM 279
Query: 356 -------QVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSP----VMPIM 404
V G+ + +GA A L+K+G ++P + +
Sbjct: 280 YQGFFLAPHVAGQ--ALKGAIFTAAF----------LEKLGMNTSPAWNAPRTDLIQSVQ 327
Query: 405 VYNPAKVSSFSR 416
+ ++ +F +
Sbjct: 328 FDDKDRMIAFCQ 339
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 31.5 bits (72), Expect = 0.83
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 19/69 (27%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLAR---------IRENSNFFRSKLQKMGFEVL 393
A+ + + A+ +V G DGS GA ++ N + +
Sbjct: 90 GAQHLIEAGVDAL-IVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNIC 148
Query: 394 G-----DND 397
G DND
Sbjct: 149 GTVGSIDND 157
Score = 30.7 bits (70), Expect = 1.3
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 17/62 (27%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
A + +++G + +L R RE+ F ++ N+
Sbjct: 476 IAYYFQKYEFDGL-IIVGGFEAFESLHQLERARESYPAF-------RIPMVLIPATLSNN 527
Query: 398 SP 399
P
Sbjct: 528 VP 529
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET:
TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Length = 373
Score = 30.9 bits (71), Expect = 0.85
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 23/89 (25%)
Query: 233 PRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVC 292
+T K I+ V + G+ + EI I K+Y D A + G++ K G V
Sbjct: 123 EKT----KAIIAV-----HLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYK-GMKVG 172
Query: 293 ELLGVDTSDVDIMMGTFS----KSFGSYG 317
L D FS K+ GS G
Sbjct: 173 SL-----GDA----AGFSFYPAKNLGSLG 192
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.93
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 10/34 (29%)
Query: 324 KELIQYLKYNCPAHLYATSISPPAAEQIISA-IQ 356
K+L LK LYA +P A I A ++
Sbjct: 23 KKLQASLK------LYADDSAPALA---IKATME 47
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 31.3 bits (71), Expect = 0.95
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 19/69 (27%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLAR---------IRENSNFFRSKLQKMGFEVL 393
A + I A+ VV G DGS GA + + E+ ++
Sbjct: 296 ACYNMVSNGIDAL-VVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIV 354
Query: 394 G-----DND 397
G DND
Sbjct: 355 GLVGSIDND 363
Score = 30.6 bits (69), Expect = 1.6
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 17/62 (27%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
A + ++IG + +L R F + N+
Sbjct: 680 VAYYFQQYKFDGL-IIIGGFEAFTALYELDAARAQYPIF-------NIPMCCLPATVSNN 731
Query: 398 SP 399
P
Sbjct: 732 VP 733
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET:
ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A*
3nu8_A* 3nu7_A* 3nub_A*
Length = 367
Score = 30.9 bits (71), Expect = 1.0
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 23/89 (25%)
Query: 233 PRTRRPWKKIMVVVEGIYSMEGELCKLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVC 292
PRT K I+ V +Y G+ I I +Y D A S GA K G+ C
Sbjct: 122 PRT----KAIIPV--SLY---GQCADFDAINAIASKYGIPVIEDAAQSFGASYK-GKRSC 171
Query: 293 ELLGVDTSDVDIMMGTFS----KSFGSYG 317
L S V S G YG
Sbjct: 172 NL-----STV----ACTSFFPSAPLGCYG 191
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 30.8 bits (70), Expect = 1.1
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 19/69 (27%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLAR---------IRENSNFFRSKLQKMGFEVL 393
AA + I A+ VV G DGS GA + E ++
Sbjct: 91 AAGNLISQGIDAL-VVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIV 149
Query: 394 G-----DND 397
G DND
Sbjct: 150 GLVGSIDND 158
Score = 30.4 bits (69), Expect = 1.6
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 17/62 (27%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
A + + +++G R ++L R F + N+
Sbjct: 475 IAYYFQKNKLDGL-IILGGFEGFRSLKQLRDGRTQHPIF-------NIPMCLIPATVSNN 526
Query: 398 SP 399
P
Sbjct: 527 VP 528
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 30.7 bits (70), Expect = 1.1
Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 43/193 (22%)
Query: 259 LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGG 318
LPE+ + K + ++D ++G ++ D +D++ + K+FG G
Sbjct: 165 LPELAKVAKEHDKLVFVDAVSAMGGA--------DIK-FDKWGLDVVFSSSQKAFGVPPG 215
Query: 319 --YIAGSKE----------------LIQYLKYNCPAHLY-ATSISPPAAEQIISAIQV-- 357
A S+ + Y+KY +T + I V
Sbjct: 216 LAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPST-----PPMPQVFGINVAL 270
Query: 358 -VIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDNDSPVMPIM--VYNPAKVSS- 413
+I + G + L + + R ++++G ++L + P + V P +
Sbjct: 271 RIIEKMGG--KEKWLEMYEKRAKMVREGVREIGLDILAEPGHE-SPTITAVLTPPGIKGD 327
Query: 414 -FSRECLKQNVAI 425
K+ +
Sbjct: 328 EVYEAMRKRGFEL 340
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 30.6 bits (69), Expect = 1.2
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 13/46 (28%)
Query: 357 VVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
++IG D S A LA + + +V+G D D
Sbjct: 171 IIIGGDDSNTNAAILAEYFKKNG--------ENIQVIGVPKTIDAD 208
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain,
DNA binding protein; NMR {Saccharomyces cerevisiae}
SCOP: a.4.3.1 PDB: 1kn5_A
Length = 123
Score = 29.2 bits (65), Expect = 1.2
Identities = 13/72 (18%), Positives = 27/72 (37%)
Query: 24 QFRDFFRKILDWWSTDNLQGYAPICLGLEDFYIRRLYNRVQDCFGRPLSSAPDAWFDVVE 83
Q+ F + +++ N+ + +G + LY VQ G + W V +
Sbjct: 18 QYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQ 77
Query: 84 RYSNDNNKTLKR 95
R + + L+
Sbjct: 78 RLQISDYQQLES 89
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 30.6 bits (70), Expect = 1.2
Identities = 33/189 (17%), Positives = 59/189 (31%), Gaps = 40/189 (21%)
Query: 259 LPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYGG 318
I + K A +LD ++G + + VD K + G
Sbjct: 143 AEAIGALAKEAGALFFLDAVTTLGML--------PFS-MRAMGVDYAFTGSQKCLSAPPG 193
Query: 319 --YIAGSKE--------------LIQYLKYNCPAHLYATSISPPAAEQIISAIQV---VI 359
IA S E L + ++ + T + A+ ++
Sbjct: 194 LAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHT-----TPVLLHYALLEALDLV 248
Query: 360 GEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLGDND-SPVMPIMVYNPAKVSS--FSR 416
E+G A + R RE + +L+ GF P + ++V P V + R
Sbjct: 249 LEEGV---AARERRAREVYAWVLEELKARGFRPYPKASPLPTV-LVVRPPEGVDADRLVR 304
Query: 417 ECLKQNVAI 425
+ VA+
Sbjct: 305 ALYAEGVAV 313
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 30.2 bits (69), Expect = 1.3
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 261 EIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELLGVD-TSDVDIMMGTFSKSFGSYG-- 317
++ + K+Y D A++ + G ++ V D+ + T SKS+ G
Sbjct: 196 RVVALAKQYDVMVVHDLAYA--DIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWR 253
Query: 318 -GYIAGSKELIQYLK 331
G++ G+ EL+ L
Sbjct: 254 IGFMVGNPELVSALA 268
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 30.2 bits (69), Expect = 1.4
Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 46/185 (24%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYL---KYNCPAHLYATSISPPAAEQIISAIQV 357
I +G+FSK G + E +Q L K + P Q++ +
Sbjct: 231 IYLGSFSKVLSP-GLRVAFAVAHPEALQKLVQAK-------QGADLHTPMLNQMLVHELL 282
Query: 358 VIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEV---LGDNDSPVMP-----IMVYNPA 409
G ++L R+R +R K Q M + + P + + P
Sbjct: 283 KEGFS------ERLERVRR---VYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPK 333
Query: 410 KVSSFS--RECLKQNVAIVTVGFPATPLLLARA-----RICISASHTKEDLIEALEVISR 462
+S+ R L++NVA V P P R+ + +E + E + R
Sbjct: 334 GLSAEGLFRRALEENVAFV----PGGPFFANGGGENTLRLSYATL-DREGIAEG---VRR 385
Query: 463 IGDLV 467
+G +
Sbjct: 386 LGRAL 390
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP;
1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB:
1mdx_A* 1mdz_A*
Length = 393
Score = 30.2 bits (69), Expect = 1.4
Identities = 36/148 (24%), Positives = 53/148 (35%), Gaps = 37/148 (25%)
Query: 150 ELEECVARFVGKPAAIVFGMGYVTNSS------ILPVL-MGKGSLIISDSLNHNSIVNGA 202
ELE R G A+ +S+ L L +G+G +I+ S+ S +N
Sbjct: 43 ELEAAFCRLTGNQYAVAV------SSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMI 96
Query: 203 RGSGATIRVF---QHNT----PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE 255
GA V +T P H+E + P+T K I+ V G
Sbjct: 97 VLLGANP-VMVDVDRDTLMVTPEHIEAAIT-------PQT----KAIIPV-----HYAGA 139
Query: 256 LCKLPEIITICKRYKAYTYLDEAHSIGA 283
L I + +RY D AH+ G
Sbjct: 140 PADLDAIYALGERYGIPVIEDAAHATGT 167
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 30.4 bits (69), Expect = 1.5
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 17/62 (27%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKLQKMGFEVLG-----DND 397
+ I I + V+IG + G +L R+ + ++ + N+
Sbjct: 481 ISANITKFNIQGL-VIIGGFEAYTGGLELMEGRK-------QFDELCIPFVVIPATVSNN 532
Query: 398 SP 399
P
Sbjct: 533 VP 534
Score = 30.0 bits (68), Expect = 2.4
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 19/69 (27%)
Query: 347 AAEQI----ISAIQVVIGEDGSCRGAQKLAR---------IRENSNFFRSKLQKMGFEVL 393
AA + I+ + VIG DGS GA + + ++
Sbjct: 101 AAHNLVKRGITNL-CVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIV 159
Query: 394 G-----DND 397
G DND
Sbjct: 160 GLVGSIDND 168
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A
{Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Length = 273
Score = 30.1 bits (67), Expect = 1.6
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 168 GMGYVTNSSILPVLMGKGSLIISDS----LNHNSIVNGARGSGATIRVFQHNTPSHLEEV 223
V PV++ G +D + +++ GA G +FQH+ +
Sbjct: 193 SFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRA 252
Query: 224 LREQIAEGQP 233
+ + + E
Sbjct: 253 VCKIVHENAD 262
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 29.9 bits (68), Expect = 1.9
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 32/146 (21%)
Query: 153 ECVARFVG-KPAAIVFGMGYVTNSSILPV------LMGKGSLIISDSLNHNS-IV---NG 201
E VA V P +V G + + G G +I L+ + I
Sbjct: 76 EAVADLVNADPGGVVLGAD--RAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRA 133
Query: 202 ARGSGATIRVFQHNT------PSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGE 255
A GA ++ + + E ++ TR +V V G
Sbjct: 134 AHRYGAKVKWAEVDIETGELPTWQWESLI-------SKSTR------LVAVNSASGTLGG 180
Query: 256 LCKLPEIITICKRYKAYTYLDEAHSI 281
+ L + + A +D + +
Sbjct: 181 VTDLRAMTKLVHDVGALVVVDHSAAA 206
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A
{Escherichia coli} PDB: 3gnd_A* 3gkf_O
Length = 295
Score = 29.8 bits (66), Expect = 2.0
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 167 FGMGYVTNSSILPVLM-GKGSLIISDSLN--HNSIVNGARGSGATIRVFQHNTPSHLEEV 223
G + +P+++ G L ++L +I GA G +FQ + P + +
Sbjct: 213 KGFERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKA 272
Query: 224 LREQIAEGQP 233
++ + +
Sbjct: 273 VQAVVHHNET 282
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 29.8 bits (67), Expect = 2.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 302 VDIMMGTFSKSFG----SYGGYIAGSKELIQYLKY 332
DI+ G+ K+ G + GGYIAG +E + +
Sbjct: 235 ADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATF 269
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 29.4 bits (67), Expect = 2.4
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLK 331
+M+ +FS ++G G GYI +K+ ++ +
Sbjct: 190 VMVYSFSHAYGIPGLRIGYIVANKDFMKRVA 220
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 29.6 bits (66), Expect = 2.6
Identities = 48/337 (14%), Positives = 101/337 (29%), Gaps = 40/337 (11%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSSILPVL-----MGKGSLIISDSLNHNSIVNGAR 203
N++ E + +G T SI L +++I +H S +
Sbjct: 136 NKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVS 194
Query: 204 GSGATIRVFQHNTPSHLEEVLREQIAEGQPRTRRPWKKIMVVVEGIYSMEGELCKLPEII 263
G +R+ + V E I + + V+ + + EI
Sbjct: 195 FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIA 254
Query: 264 TICKRYKAYTYLDEAHSIGAVGKTGRGV-CELLGVD--TSDVDIMMGTFSKSFGSYGGYI 320
IC+ Y ++ A++I + VD S D + T G G
Sbjct: 255 KICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLT---PIGG-GLVY 310
Query: 321 AGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNF 380
+ E I+ + + P A +P + +G + + + +
Sbjct: 311 STDAEFIKEISLSYPGRASA---TPVVN---TLVSLLSMGSKNY---LELVKNQKNSKKL 361
Query: 381 FRSKLQKMGFE----VLGDNDSPVMPIMVY-NPAKVSS--FSRECLKQNVAIVTVGFPA- 432
L + + L I V +P ++++ ++ T F
Sbjct: 362 LDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNC 421
Query: 433 ------TPLLLARARICISASHTKEDLIEALEVISRI 463
++ A I + ED++ ++ + +I
Sbjct: 422 YLGTYTHDYIVMNAAIGV----RTEDIVNSVSKLEKI 454
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 29.5 bits (67), Expect = 2.8
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 261 EIITICKRYKAYTYLDEAHS-IGAVGKTGRG---VCELLGVDTSDVDIMMGTFSKSFGSY 316
E+ + +Y DE +S I G G LG +M + SK
Sbjct: 192 EVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSR-QKLLMFTSLSKRSNVP 250
Query: 317 G---GYIAGSKELIQYLK 331
G G++AG EL++
Sbjct: 251 GLRSGFVAGDAELLKNFL 268
>2yg2_A Apolipoprotein M; lipid transport, lipocalin, HDL; HET: S1P FLC;
1.70A {Homo sapiens} PDB: 2wex_A* 2wew_A* 2xkl_A
Length = 172
Score = 28.6 bits (63), Expect = 2.9
Identities = 15/97 (15%), Positives = 34/97 (35%)
Query: 319 YIAGSKELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENS 378
+IAG+ + L P +++ +A + + +DG C + + + E S
Sbjct: 33 FIAGAAPTKEELATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGS 92
Query: 379 NFFRSKLQKMGFEVLGDNDSPVMPIMVYNPAKVSSFS 415
R++ + L + P ++ F
Sbjct: 93 TDLRTEGRPDMKTELFSSSCPGGIMLNETGQGYQRFL 129
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 29.4 bits (66), Expect = 3.0
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELI--------QYLKYNCPAHLYATSISPPAAEQII 352
+++ +FSK FG+ G G +A ++ + Q + H Y + + + + I
Sbjct: 308 LLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFI 367
Query: 353 SAI 355
+
Sbjct: 368 DRL 370
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 27.9 bits (62), Expect = 3.2
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 216 TPSHLEEVLRE------QIAEGQPRTRRPWKKIMVVVEG 248
EV + +IA+G + R+ W VV+ G
Sbjct: 5 ASVGSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTG 43
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 29.1 bits (66), Expect = 3.4
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 261 EIITICKRYKAYTYLDEAHS-IGAVGKTGRG---VCELLGVDTSDVDIMMGTFSKSFGSY 316
+ + ++ DE +S I C L G + +++ + SK +
Sbjct: 178 SWVKLALKHDFILINDECYSEIYE-NTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236
Query: 317 G---GYIAGSKELIQYLK 331
G G+IAG L++ K
Sbjct: 237 GLRSGFIAGDSRLLEKYK 254
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 28.8 bits (64), Expect = 4.5
Identities = 44/260 (16%), Positives = 89/260 (34%), Gaps = 37/260 (14%)
Query: 146 ALHNELEECVARFVGKPAAI-VFGMGYVTNSSILPVLMG------KGSLIISDSLNHNSI 198
+ N L V + G + F + T S+ + K II ++ S
Sbjct: 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSC 157
Query: 199 VNGARGSGATIRVFQHNTPSHLEEV----LREQIAEGQPRTRRPWKKIMVVVEGIYSMEG 254
+G V ++ + +I E P + I+ +
Sbjct: 158 FKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGP------EHILCLHSTTACFAP 211
Query: 255 ELC-KLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELL--GVDTSDVDIMMGTFSK 311
+ +L E+ IC Y ++ A+ + + L+ G +D + + K
Sbjct: 212 RVPDRLEELAVICANYDIPHVVNNAYGLQS-----SKCMHLIQQGARVGRIDAFVQSLDK 266
Query: 312 SF--GSYGGYIAGS-KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGA 368
+F G IAG + IQ + P A+ P+ + +I+ + +G G
Sbjct: 267 NFMVPVGGAIIAGFNEPFIQDISKMYPGRASAS----PSLDVLITLLS--LGCSGY---R 317
Query: 369 QKLARIRENSNFFRSKLQKM 388
+ L +E + ++L+K+
Sbjct: 318 KLLKERKEMFVYLSTQLKKL 337
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase
maturation, [4Fe-4S] cluster, thiol redox binding
protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Length = 372
Score = 28.5 bits (64), Expect = 5.6
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 404 MVYNPAKVSSFSRECLKQNVAIVTVGF----PATPLLLARAR 441
+VY ++E + V + GF +L A
Sbjct: 123 IVYGIFDTYRIAKENPDKTVVHFSPGFETTTAPAAGMLNVAA 164
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 28.6 bits (63), Expect = 6.1
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 65 DCFGRPLSSAPDAWFDVVERYSNDNNKTLKRTNNVSRCLNLGSYNYL-----GFAAADEY 119
CF A + FD E Y+ D + +S+ G+ YL GF A +Y
Sbjct: 281 SCF---EDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQY 337
Query: 120 CTPR 123
PR
Sbjct: 338 VLPR 341
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 28.2 bits (64), Expect = 7.1
Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 42/210 (20%)
Query: 269 YKAYTYLDEAHSIGAVGKTGRGVCELLGVDTSDVDIMMGTFSKSFGSYG---GYIAGSKE 325
Y Y + +S + + I++ FSK + G GY+ + E
Sbjct: 192 YNGLVYEGKCYSAIEFD------------ENLEKTILINGFSKLYAMTGWRIGYVISNDE 239
Query: 326 LIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGAQKLARIRENSNFFRSKL 385
+I+ + S P Q +A++ E + +
Sbjct: 240 IIEAIL---KLQQNLFI-SAPTISQ-YAALKAFEKETEREINSMIKE-FDRRRRLVLKYV 293
Query: 386 QKMGFEVLGDNDSPVMP-----IMVYNPAKVSSFSRECL-KQNVAIVT-VGFPATPLLLA 438
+ G+EV P + F+ + L ++ VA+ +GF +
Sbjct: 294 KDFGWEV-------NNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKG--KN 344
Query: 439 RARICISASHTKEDLIEALEVISRIGDLVG 468
RI + S E++ E LE RI + +
Sbjct: 345 YIRISYANS--YENIKEGLE---RIKEFLN 369
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 27.9 bits (63), Expect = 7.6
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 304 IMMGTFSKSFGSYG---GYIAGSKELIQYLK-----YNCPA 336
++M T SK G G GY+AG + ++ L YN
Sbjct: 220 LVMRTVSK-LGLAGIRLGYVAGDPQWLEQLDKVRPPYNVNV 259
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 28.1 bits (62), Expect = 8.1
Identities = 42/260 (16%), Positives = 87/260 (33%), Gaps = 37/260 (14%)
Query: 146 ALHNELEECVARFVGKP-AAIVFGMGYVTNSSILPVLMG------KGSLIISDSLNHNSI 198
+ N L + + G A F + T S+ + K II ++ S
Sbjct: 116 KITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSC 175
Query: 199 VNGARGSGATIRVFQHNTPSHLEEV----LREQIAEGQPRTRRPWKKIMVVVEGIYSMEG 254
+G V ++ + ++ E P I+ +
Sbjct: 176 FKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGP------DCILCIHSTTSCFAP 229
Query: 255 ELC-KLPEIITICKRYKAYTYLDEAHSIGAVGKTGRGVCELL--GVDTSDVDIMMGTFSK 311
+ +L E+ IC Y ++ A+ G L+ G +D + + K
Sbjct: 230 RVPDRLEELAVICANYDIPHIVNNAY-----GVQSSKCMHLIQQGARVGRIDAFVQSLDK 284
Query: 312 SFGS-YGGYIAGS--KELIQYLKYNCPAHLYATSISPPAAEQIISAIQVVIGEDGSCRGA 368
+F GG I IQ + P A+ P+ + +I+ + +G +G
Sbjct: 285 NFMVPVGGAIIAGFNDSFIQEISKMYPGRASAS----PSLDVLITLLS--LGSNGY---K 335
Query: 369 QKLARIRENSNFFRSKLQKM 388
+ L +E ++ ++++K+
Sbjct: 336 KLLKERKEMFSYLSNQIKKL 355
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.413
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,713,528
Number of extensions: 487061
Number of successful extensions: 1309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1234
Number of HSP's successfully gapped: 124
Length of query: 488
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 391
Effective length of database: 3,993,456
Effective search space: 1561441296
Effective search space used: 1561441296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.2 bits)