Query 040328
Match_columns 187
No_of_seqs 25 out of 27
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 11:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kvd_A SMK toxin; halotolerant 38.2 5.8 0.0002 27.8 -0.3 34 65-98 12-46 (63)
2 1v54_M VIIIB, IX, cytochrome C 21.3 21 0.0007 23.8 0.1 29 94-122 16-44 (46)
3 2vnt_A Urokinase-type plasmino 21.1 23 0.00079 27.3 0.3 23 103-125 252-274 (276)
4 4dkw_A Large terminase protein 17.6 25 0.00085 28.2 -0.2 25 101-125 140-164 (211)
5 2y69_M Cytochrome C oxidase po 14.7 40 0.0014 24.1 0.3 30 94-123 40-69 (70)
6 3bej_E Nuclear receptor coacti 13.7 64 0.0022 19.3 0.9 14 12-25 6-19 (26)
7 4er8_A Tnparep for protein; pr 13.0 35 0.0012 26.1 -0.5 17 166-182 119-135 (165)
8 2any_A Kininogenin, plasma kal 13.0 48 0.0016 25.2 0.3 24 102-125 218-241 (241)
9 1v96_A Hypothetical protein PH 10.6 43 0.0015 23.6 -0.6 14 109-122 134-147 (149)
10 3ged_A Short-chain dehydrogena 8.9 2.4E+02 0.0081 22.7 3.1 35 147-185 208-245 (247)
No 1
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=38.25 E-value=5.8 Score=27.81 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=18.5
Q ss_pred HHHHhhcCcccccCCC-chHHHHHHHHHHHHHhhc
Q 040328 65 ILIAVSSLSVATSSSN-KCYAAHMVATVLTGIFQG 98 (187)
Q Consensus 65 i~~avsGCs~~~~~~~-~~ytaHmv~t~LTaIfqG 98 (187)
-+.+++|||++.+-.+ .-=-.--+++.+-||.||
T Consensus 12 tiaaiagcsgaatfgglaggivgciaagilailqg 46 (63)
T 1kvd_A 12 TIAAIAGCSGAATFGGLAGGIVGCIAAGILAILQG 46 (63)
T ss_dssp CCCCBCCCSSCCCCTTCCSHHHHHHHHHHHHHHHH
T ss_pred ehHHHhCCccchhcccccchHHHHHHHHHHHHHhc
Confidence 3567899998764111 000112244566678887
No 2
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=21.34 E-value=21 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=20.4
Q ss_pred HHhhcceeheehhhhhhHHhhhccccccC
Q 040328 94 GIFQGSVSVLIFASTSDFLGYLKSYVREE 122 (187)
Q Consensus 94 aIfqGs~svliFtrt~dfl~~LKSyvree 122 (187)
+|+.+...+.++.--+=+|.+||+|.+.|
T Consensus 16 aigl~v~f~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 16 AIGLSVTFLSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHTC-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 44444444566777888999999998875
No 3
>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}
Probab=21.09 E-value=23 Score=27.27 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=19.0
Q ss_pred eehhhhhhHHhhhccccccCchh
Q 040328 103 LIFASTSDFLGYLKSYVREEDGA 125 (187)
Q Consensus 103 liFtrt~dfl~~LKSyvreedg~ 125 (187)
-+|||.+.|+.-+++..+|++|-
T Consensus 252 ~vyt~V~~y~~WI~~~~~~~nGl 274 (276)
T 2vnt_A 252 GVYTRVSHFLPWIRSHTKEENGL 274 (276)
T ss_dssp EEEEEGGGGHHHHHHHHSCC---
T ss_pred EEEEEHHHHHHHHHHHhhhhcCC
Confidence 58999999999999999999873
No 4
>4dkw_A Large terminase protein; DNA-packaging, small terminase, nuclease FO endonuclease, DNA, DNA-packaging motor, hydrolase; 2.02A {Enterobacteria phage P22}
Probab=17.62 E-value=25 Score=28.17 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=22.0
Q ss_pred eheehhhhhhHHhhhccccccCchh
Q 040328 101 SVLIFASTSDFLGYLKSYVREEDGA 125 (187)
Q Consensus 101 svliFtrt~dfl~~LKSyvreedg~ 125 (187)
-+.++.+...++.+++.|+++++|+
T Consensus 140 ~i~v~~~C~~~i~E~~~Y~~d~~g~ 164 (211)
T 4dkw_A 140 RFKVFNTCEPFFEEFRLYHRDENGK 164 (211)
T ss_dssp CEEEETTCHHHHHHHHHCEECTTSC
T ss_pred eEEEeCCChHHHHHHHhCcCCCCCC
Confidence 4778888999999999999998884
No 5
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=14.74 E-value=40 Score=24.09 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=20.2
Q ss_pred HHhhcceeheehhhhhhHHhhhccccccCc
Q 040328 94 GIFQGSVSVLIFASTSDFLGYLKSYVREED 123 (187)
Q Consensus 94 aIfqGs~svliFtrt~dfl~~LKSyvreed 123 (187)
+|+.+...+.++.--+=+|.+||+|-+.|.
T Consensus 40 aigltv~f~~~L~PagWVLshLe~YKk~e~ 69 (70)
T 2y69_M 40 AIGLSVTFLSFLLPAGWVLYHLDNYKKSSA 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHSCC--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccccC
Confidence 334444445577788889999999988753
No 6
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=13.70 E-value=64 Score=19.35 Aligned_cols=14 Identities=50% Similarity=0.683 Sum_probs=12.1
Q ss_pred CccchhhhhhHHHH
Q 040328 12 SSFAETHSRKHKLL 25 (187)
Q Consensus 12 ~s~~~~h~~t~k~f 25 (187)
+|..|.|.-+||++
T Consensus 6 ~sL~EkHkILHrLL 19 (26)
T 3bej_E 6 SSLTERHKILHRLL 19 (26)
T ss_pred hhHHHHHHHHHHHH
Confidence 57899999999975
No 7
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=12.98 E-value=35 Score=26.14 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=9.6
Q ss_pred CcccccccccccCCCCc
Q 040328 166 AGASRFQEEDSKAWSRP 182 (187)
Q Consensus 166 ~~~~~~~~~~~k~w~~~ 182 (187)
++.+.+--++.++|||+
T Consensus 119 NPVraglV~~~~dw~~S 135 (165)
T 4er8_A 119 NPVKHGWVKQVSDWPFS 135 (165)
T ss_dssp HHHHTTSCSSGGGCCSB
T ss_pred CHHhhcccCChhhCCcc
Confidence 34433333457789874
No 8
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*
Probab=12.96 E-value=48 Score=25.15 Aligned_cols=24 Identities=8% Similarity=0.421 Sum_probs=19.2
Q ss_pred heehhhhhhHHhhhccccccCchh
Q 040328 102 VLIFASTSDFLGYLKSYVREEDGA 125 (187)
Q Consensus 102 vliFtrt~dfl~~LKSyvreedg~ 125 (187)
--+|||.+.|+.-+++.+++.||+
T Consensus 218 p~vyt~V~~~~~WI~~~~~~~~~~ 241 (241)
T 2any_A 218 PGVYTKVAEYMDWILEKTQSSDGK 241 (241)
T ss_dssp CEEEEEGGGGHHHHHHHHSCC---
T ss_pred CeEEEEHHHhHHHHHHHhhcccCC
Confidence 468999999999999999999885
No 9
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=10.58 E-value=43 Score=23.57 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=6.8
Q ss_pred hhHHhhhccccccC
Q 040328 109 SDFLGYLKSYVREE 122 (187)
Q Consensus 109 ~dfl~~LKSyvree 122 (187)
.+|++.+++|+|+|
T Consensus 134 ~efl~~~~~~~~~~ 147 (149)
T 1v96_A 134 DKFIKEVELMVEKE 147 (149)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34445555555543
No 10
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=8.91 E-value=2.4e+02 Score=22.69 Aligned_cols=35 Identities=20% Similarity=0.521 Sum_probs=19.0
Q ss_pred HHHHHHhhhhcccCCC---CCCCcccccccccccCCCCccee
Q 040328 147 ALTFLLRYHAFVDGSN---SGAAGASRFQEEDSKAWSRPFQV 185 (187)
Q Consensus 147 ~LAF~l~y~~y~~~~~---~~~~~~~~~~~~~~k~w~~~~qv 185 (187)
+..|+.. .+|+-|.+ .|+-.. |. --..+|.|++||
T Consensus 208 ~v~fL~s-~~~iTG~~i~VDGG~s~-r~--~~~~~~~~~~~~ 245 (247)
T 3ged_A 208 MVLFLCQ-QDFITGETIIVDGGMSK-RM--IYHGDWNWFYKI 245 (247)
T ss_dssp HHHHHHH-CSSCCSCEEEESTTGGG-CC--CCTTSTTCCCCC
T ss_pred HHHHHHh-CCCCCCCeEEECcCHHH-hC--cccCCCCCcCCC
Confidence 3345554 57877744 223222 21 124689999986
Done!