Query 040328
Match_columns 187
No_of_seqs 25 out of 27
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 11:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040328.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040328hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1kve.1 d.70.1.2 (A:,B:) SMK t 15.9 10 0.00073 28.0 -1.0 32 65-98 12-46 (140)
2 d1v54m_ f.23.7.1 (M:) Mitochon 10.5 27 0.002 21.5 0.1 28 93-120 15-42 (43)
3 d1o82a_ a.64.2.1 (A:) Bacterio 7.3 46 0.0033 22.1 0.1 43 79-123 21-63 (70)
4 d1ybea2 d.41.2.2 (A:8-167) Nic 6.6 28 0.0021 25.5 -1.4 41 108-149 102-148 (160)
5 d2h00a1 c.66.1.54 (A:5-254) Me 5.9 63 0.0046 24.0 0.3 17 32-48 67-83 (250)
6 d1orsc_ f.14.1.1 (C:) Potassiu 4.7 3E+02 0.022 18.2 3.3 25 121-145 32-56 (132)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 4.6 2.3E+02 0.017 17.3 2.5 13 57-69 7-19 (158)
8 d1h2sb_ f.17.4.1 (B:) Sensory 4.6 2.3E+02 0.017 17.8 2.4 18 54-71 1-18 (60)
9 d1m56d_ f.23.8.1 (D:) Bacteria 4.3 4E+02 0.029 15.8 4.7 37 6-42 1-37 (42)
10 d2f7fa2 d.41.2.1 (A:4-140) Put 4.3 97 0.0071 21.4 0.3 40 108-148 80-131 (137)
No 1
>g1kve.1 d.70.1.2 (A:,B:) SMK toxin {Halotolerant yeast (Pichia farinosa) [TaxId: 4920]}
Probab=15.90 E-value=10 Score=28.05 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=18.3
Q ss_pred HHHHhhcCcccccC---CCchHHHHHHHHHHHHHhhc
Q 040328 65 ILIAVSSLSVATSS---SNKCYAAHMVATVLTGIFQG 98 (187)
Q Consensus 65 i~~avsGCs~~~~~---~~~~ytaHmv~t~LTaIfqG 98 (187)
-+.+++|||++.+- .++ -.--+++.+-||.||
T Consensus 12 tiaaiagcsgaatfgglagg--ivgciaagilailqg 46 (140)
T g1kve.1 12 TIAAIAGCSGAATFGGLAGG--IVGCIAAGILAILQG 46 (140)
T ss_dssp CCCCBCCCSSCCCGGGCCSH--HHHHHHHHHHHHHHH
T ss_pred ehhhhhCCccccccccccch--hHHHHHHHHHHHHhc
Confidence 35678999987541 111 112244556678887
No 2
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.53 E-value=27 Score=21.46 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=19.9
Q ss_pred HHHhhcceeheehhhhhhHHhhhccccc
Q 040328 93 TGIFQGSVSVLIFASTSDFLGYLKSYVR 120 (187)
Q Consensus 93 TaIfqGs~svliFtrt~dfl~~LKSyvr 120 (187)
.||+..+..+-+..-.+=+|.+|.+|.|
T Consensus 15 ~aigLt~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 15 QAIGLSVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcc
Confidence 4555555556667778888888888866
No 3
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=7.33 E-value=46 Score=22.06 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=33.5
Q ss_pred CCchHHHHHHHHHHHHHhhcceeheehhhhhhHHhhhccccccCc
Q 040328 79 SNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREED 123 (187)
Q Consensus 79 ~~~~ytaHmv~t~LTaIfqGs~svliFtrt~dfl~~LKSyvreed 123 (187)
.++|-+ .+...|+|+|.|-.|++.-.-.+...++||....+..
T Consensus 21 agg~vt--tivsil~avgsgglsllaaag~e~i~~~lkk~i~~kg 63 (70)
T d1o82a_ 21 AGGWVT--TIVSILTAVGSGGLSLLAAAGRESIKAYLKKEIKKKG 63 (70)
T ss_dssp TTCCHH--HHHHHHHHHCHHHHHHHHHTTTSCHHHHHHHHHHHHC
T ss_pred cCcchh--hHHHHHHHHccccHHHHHHhcHHHHHHHHHHHHHHhC
Confidence 345654 4567899999999999999888888999987666544
No 4
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.60 E-value=28 Score=25.46 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=29.3
Q ss_pred hhhHHhhhccccc------cCchhHHHHhhhhHHHHHHHHHHHHHHHH
Q 040328 108 TSDFLGYLKSYVR------EEDGAVILKLAGALSVLIFFLEWVVLALT 149 (187)
Q Consensus 108 t~dfl~~LKSyvr------eedg~vILkl~GgL~~~ifclew~vL~LA 149 (187)
..+|+++||.|.- .+||++.+++-|=+.-+++ +|..+|.+-
T Consensus 102 ~~~fl~~L~~f~f~~~~~~~~eG~l~i~V~GP~~~~~L-~EtplLaII 148 (160)
T d1ybea2 102 EPEFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDTTL-WEIPALSII 148 (160)
T ss_dssp CHHHHHHHHTCCCCCCEEEECSSCEEEEECSBHHHHGG-GHHHHHHHH
T ss_pred CHHHHHHHhcCCCCceEEEecCCcEEEEEEEEHHHHHH-HHHHHHHHH
Confidence 4688888875543 3478888999998877665 677666553
No 5
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.94 E-value=63 Score=24.03 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=14.6
Q ss_pred HHhhhhhHHHHHhhhhc
Q 040328 32 LLAASSSFIFLTLSLRL 48 (187)
Q Consensus 32 lL~aAsscIfltLsLRL 48 (187)
=+|.+++||.++|+-|.
T Consensus 67 DiGtGsg~I~~~l~~~~ 83 (250)
T d2h00a1 67 DIGTGASCIYPLLGATL 83 (250)
T ss_dssp EESCTTTTHHHHHHHHH
T ss_pred EeCCCchHHHHHHHHhC
Confidence 36899999999998876
No 6
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=4.74 E-value=3e+02 Score=18.23 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.6
Q ss_pred cCchhHHHHhhhhHHHHHHHHHHHH
Q 040328 121 EEDGAVILKLAGALSVLIFFLEWVV 145 (187)
Q Consensus 121 eedg~vILkl~GgL~~~ifclew~v 145 (187)
+++...++...--.+..+|.+|.+.
T Consensus 32 ~~~~~~~l~~~e~v~~~iF~~E~~l 56 (132)
T d1orsc_ 32 SGEYLVRLYLVDLILVIILWADYAY 56 (132)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999763
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=4.59 E-value=2.3e+02 Score=17.31 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHh
Q 040328 57 LILLHVLTILIAV 69 (187)
Q Consensus 57 lIllhalTi~~av 69 (187)
+|++-++-|++++
T Consensus 7 lVViaIIgILaai 19 (158)
T d2pila_ 7 MIVIAIVGILAAV 19 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 8
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=4.58 E-value=2.3e+02 Score=17.82 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 040328 54 GFFLILLHVLTILIAVSS 71 (187)
Q Consensus 54 G~~lIllhalTi~~avsG 71 (187)
|-.+|+..++|+..+...
T Consensus 1 gavfifvgaltvlfgaia 18 (60)
T d1h2sb_ 1 GAVFIFVGALTVLFGAIA 18 (60)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcHHHHHHhhhh
Confidence 346788999999887553
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.34 E-value=4e+02 Score=15.82 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=19.9
Q ss_pred CCCCCCCccchhhhhhHHHHHHHHHHHHhhhhhHHHH
Q 040328 6 NINPSSSSFAETHSRKHKLLLISNYILLAASSSFIFL 42 (187)
Q Consensus 6 ~~~~~~~s~~~~h~~t~k~fl~~NYilL~aAsscIfl 42 (187)
+++|++-.++.|-.--.-+..+.-+...+.....||+
T Consensus 1 ~HkHG~MDi~vQEKTF~gFik~~t~~~i~~i~~lifl 37 (42)
T d1m56d_ 1 GHVAGSMDITQQEKTFAGFVRMVTWAAVVIVAALIFL 37 (42)
T ss_dssp CCCTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677544566665555566666666544433333333
No 10
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.30 E-value=97 Score=21.43 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=25.5
Q ss_pred hhhHHhhhccccc------cCc------hhHHHHhhhhHHHHHHHHHHHHHHH
Q 040328 108 TSDFLGYLKSYVR------EED------GAVILKLAGALSVLIFFLEWVVLAL 148 (187)
Q Consensus 108 t~dfl~~LKSyvr------eed------g~vILkl~GgL~~~ifclew~vL~L 148 (187)
..||+++||.+.- .++ ++.++++-|=+.-++. +|..+|.+
T Consensus 80 ~~~fl~~L~~~~~~~~i~av~EG~~v~~~ep~l~I~Gp~~~~~L-~Et~lL~i 131 (137)
T d2f7fa2 80 PEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGPLAQCQL-VETALLNM 131 (137)
T ss_dssp CHHHHHHHHTCCCCCEEEECCTTCEECTTSCSEEEEEEHHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHhCCCCceEEEecCCccccCCeEEEEEEEcHHHHHH-HHHHHHHH
Confidence 4679999875432 233 4456999997765554 67766553
Done!