Query 040332
Match_columns 1210
No_of_seqs 629 out of 5633
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 07:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3E-83 6.4E-88 777.5 40.0 583 37-627 24-651 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.6E-62 1.9E-66 628.1 60.1 669 151-1000 181-901 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-40 2.5E-45 370.8 17.4 265 159-425 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 2.9E-32 6.3E-37 355.8 23.6 512 501-1167 69-589 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.6E-31 3.5E-36 348.8 24.1 510 523-1186 69-584 (968)
6 KOG0618 Serine/threonine phosp 99.9 3.9E-24 8.6E-29 244.8 0.4 450 536-1182 31-485 (1081)
7 PLN03210 Resistant to P. syrin 99.9 7.9E-21 1.7E-25 247.2 21.7 279 818-1167 632-911 (1153)
8 KOG4194 Membrane glycoprotein 99.8 9.5E-22 2.1E-26 213.3 7.8 385 552-1132 54-448 (873)
9 KOG0444 Cytoskeletal regulator 99.8 4.9E-23 1.1E-27 224.1 -3.8 367 549-1080 6-377 (1255)
10 KOG4194 Membrane glycoprotein 99.8 1.4E-21 3.1E-26 211.9 4.1 133 552-692 80-215 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 3.3E-23 7.2E-28 214.9 -8.5 137 546-692 64-201 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 2.8E-23 6.1E-28 215.5 -13.9 198 547-778 88-286 (565)
13 KOG0618 Serine/threonine phosp 99.8 6.5E-22 1.4E-26 226.8 -6.3 422 546-1103 64-488 (1081)
14 KOG0444 Cytoskeletal regulator 99.8 3.8E-21 8.2E-26 209.5 -1.7 323 499-923 53-379 (1255)
15 KOG0617 Ras suppressor protein 99.4 4E-15 8.7E-20 137.0 -3.8 166 514-693 24-192 (264)
16 PRK15387 E3 ubiquitin-protein 99.4 2.4E-12 5.3E-17 154.9 16.8 119 550-691 201-319 (788)
17 KOG4237 Extracellular matrix p 99.4 5.3E-15 1.2E-19 154.6 -5.9 389 538-1000 79-496 (498)
18 PRK15387 E3 ubiquitin-protein 99.4 6.7E-12 1.5E-16 151.1 16.0 97 573-690 201-298 (788)
19 KOG0617 Ras suppressor protein 99.3 5.9E-14 1.3E-18 129.4 -3.3 136 548-692 31-168 (264)
20 PRK15370 E3 ubiquitin-protein 99.3 2.2E-11 4.8E-16 147.9 12.6 122 550-691 178-300 (754)
21 PRK04841 transcriptional regul 99.3 4.3E-10 9.2E-15 147.0 25.5 287 152-475 12-333 (903)
22 KOG4341 F-box protein containi 99.2 3.7E-13 8.1E-18 142.4 -3.4 310 820-1178 138-457 (483)
23 KOG4658 Apoptotic ATPase [Sign 99.2 4.9E-11 1.1E-15 147.2 9.4 125 548-682 521-650 (889)
24 KOG4341 F-box protein containi 99.2 9.9E-13 2.1E-17 139.2 -5.1 287 820-1158 164-461 (483)
25 PRK15370 E3 ubiquitin-protein 99.2 1.3E-10 2.7E-15 141.4 11.7 95 551-655 221-316 (754)
26 KOG4237 Extracellular matrix p 99.1 5E-12 1.1E-16 132.7 -0.4 109 576-691 70-181 (498)
27 COG2909 MalT ATP-dependent tra 99.0 7.5E-09 1.6E-13 120.7 18.7 287 153-476 18-340 (894)
28 TIGR03015 pepcterm_ATPase puta 99.0 2.7E-08 5.9E-13 109.4 21.5 174 172-348 40-242 (269)
29 PRK00411 cdc6 cell division co 99.0 4.5E-08 9.7E-13 114.2 23.0 279 153-452 29-358 (394)
30 PF05729 NACHT: NACHT domain 99.0 2.6E-09 5.6E-14 108.1 11.0 139 176-314 1-163 (166)
31 PF01637 Arch_ATPase: Archaeal 98.9 3.5E-09 7.5E-14 114.2 10.0 184 156-343 1-233 (234)
32 TIGR02928 orc1/cdc6 family rep 98.8 1.4E-06 3E-11 100.6 28.3 280 154-452 15-350 (365)
33 PF14580 LRR_9: Leucine-rich r 98.8 6.1E-09 1.3E-13 102.7 6.7 106 574-687 20-126 (175)
34 KOG1259 Nischarin, modulator o 98.8 6.9E-10 1.5E-14 112.2 -0.5 136 547-691 281-416 (490)
35 PF14580 LRR_9: Leucine-rich r 98.8 3E-09 6.6E-14 104.8 3.4 130 547-682 16-148 (175)
36 TIGR00635 ruvB Holliday juncti 98.8 2.3E-07 5E-12 103.9 18.9 174 153-346 3-203 (305)
37 cd00116 LRR_RI Leucine-rich re 98.8 1.9E-09 4.1E-14 122.4 1.6 139 544-687 17-178 (319)
38 PRK00080 ruvB Holliday junctio 98.7 4E-07 8.7E-12 102.4 19.3 258 151-452 22-310 (328)
39 KOG0532 Leucine-rich repeat (L 98.7 1.2E-09 2.6E-14 120.4 -1.4 178 505-698 79-258 (722)
40 COG2256 MGS1 ATPase related to 98.7 1.3E-07 2.8E-12 101.3 12.6 225 151-393 21-266 (436)
41 PRK13342 recombination factor 98.7 1.8E-07 3.8E-12 108.6 14.1 179 152-347 10-199 (413)
42 COG3903 Predicted ATPase [Gene 98.6 1.7E-08 3.7E-13 109.0 4.0 287 174-477 13-317 (414)
43 PRK06893 DNA replication initi 98.6 3.9E-07 8.5E-12 96.4 12.8 154 173-346 37-205 (229)
44 KOG0532 Leucine-rich repeat (L 98.5 7.2E-09 1.6E-13 114.5 -2.5 152 540-704 89-242 (722)
45 cd00116 LRR_RI Leucine-rich re 98.5 6.1E-08 1.3E-12 110.0 4.3 139 544-687 75-234 (319)
46 PF13173 AAA_14: AAA domain 98.5 4.4E-07 9.6E-12 86.4 8.5 117 175-306 2-127 (128)
47 PRK07003 DNA polymerase III su 98.5 7.8E-06 1.7E-10 96.5 19.4 187 151-346 13-223 (830)
48 KOG3207 Beta-tubulin folding c 98.4 5.4E-08 1.2E-12 104.6 0.7 218 615-916 118-336 (505)
49 PRK14949 DNA polymerase III su 98.4 2.9E-06 6.2E-11 102.2 15.0 188 152-348 14-225 (944)
50 PRK14961 DNA polymerase III su 98.4 7.3E-06 1.6E-10 93.3 17.6 181 152-341 14-217 (363)
51 PRK12323 DNA polymerase III su 98.4 3.1E-06 6.7E-11 98.5 14.2 185 151-344 13-225 (700)
52 PRK15386 type III secretion pr 98.4 3.2E-07 7E-12 101.4 5.7 146 1040-1198 51-203 (426)
53 PRK04195 replication factor C 98.4 2.8E-05 6.2E-10 92.2 22.6 185 151-349 11-207 (482)
54 PRK05564 DNA polymerase III su 98.4 7.1E-06 1.5E-10 91.7 16.6 177 153-342 3-188 (313)
55 PRK12402 replication factor C 98.4 6.8E-06 1.5E-10 93.8 16.3 183 152-342 13-224 (337)
56 COG3899 Predicted ATPase [Gene 98.4 1.2E-05 2.5E-10 100.8 19.4 253 156-417 2-333 (849)
57 TIGR03420 DnaA_homol_Hda DnaA 98.4 3.8E-06 8.1E-11 89.6 13.1 172 158-348 21-205 (226)
58 KOG3207 Beta-tubulin folding c 98.4 5.9E-08 1.3E-12 104.2 -0.8 136 546-688 142-285 (505)
59 PLN03025 replication factor C 98.3 5.4E-06 1.2E-10 92.9 14.4 181 151-338 10-194 (319)
60 PRK14960 DNA polymerase III su 98.3 7.9E-06 1.7E-10 95.5 15.6 183 151-342 12-217 (702)
61 PRK14957 DNA polymerase III su 98.3 1E-05 2.2E-10 94.9 16.1 189 151-348 13-225 (546)
62 PTZ00112 origin recognition co 98.3 1.1E-05 2.4E-10 95.5 15.6 195 154-349 755-987 (1164)
63 PRK14962 DNA polymerase III su 98.3 2.1E-05 4.5E-10 91.5 17.6 188 152-348 12-223 (472)
64 PRK14963 DNA polymerase III su 98.3 2E-05 4.3E-10 92.5 17.5 188 152-348 12-222 (504)
65 PRK06645 DNA polymerase III su 98.3 1.6E-05 3.4E-10 92.8 16.3 180 152-340 19-225 (507)
66 PRK09376 rho transcription ter 98.3 1.2E-06 2.6E-11 95.8 6.6 91 166-257 159-268 (416)
67 PRK14956 DNA polymerase III su 98.3 7.7E-06 1.7E-10 93.1 13.2 180 151-339 15-217 (484)
68 COG4886 Leucine-rich repeat (L 98.3 6.1E-07 1.3E-11 104.9 4.6 178 547-782 113-292 (394)
69 cd01128 rho_factor Transcripti 98.2 1.7E-06 3.7E-11 91.3 6.7 84 173-257 14-115 (249)
70 cd00009 AAA The AAA+ (ATPases 98.2 6.7E-06 1.4E-10 81.2 10.3 123 157-284 1-131 (151)
71 PRK00440 rfc replication facto 98.2 3.6E-05 7.8E-10 87.2 17.5 182 152-342 15-201 (319)
72 PRK09112 DNA polymerase III su 98.2 5.6E-05 1.2E-09 84.6 17.9 184 150-344 19-240 (351)
73 PRK13341 recombination factor 98.2 1.2E-05 2.5E-10 98.1 13.3 169 151-337 25-210 (725)
74 PRK07994 DNA polymerase III su 98.2 1.6E-05 3.5E-10 94.6 14.1 184 151-343 13-219 (647)
75 PRK05896 DNA polymerase III su 98.2 2.5E-05 5.4E-10 91.5 15.4 187 151-346 13-223 (605)
76 KOG2120 SCF ubiquitin ligase, 98.2 1.8E-07 3.9E-12 95.3 -1.9 58 619-683 186-243 (419)
77 PRK07940 DNA polymerase III su 98.2 4.1E-05 8.8E-10 86.9 16.7 177 153-344 4-213 (394)
78 PF05496 RuvB_N: Holliday junc 98.2 1.5E-05 3.2E-10 80.3 11.4 177 150-346 20-223 (233)
79 PRK14964 DNA polymerase III su 98.2 3.1E-05 6.7E-10 89.4 15.7 181 151-340 10-213 (491)
80 PLN03150 hypothetical protein; 98.2 3.2E-06 7E-11 103.2 8.2 104 551-654 419-526 (623)
81 PRK07471 DNA polymerase III su 98.2 5.3E-05 1.1E-09 85.2 16.8 181 151-344 16-238 (365)
82 TIGR00678 holB DNA polymerase 98.1 5.1E-05 1.1E-09 77.9 15.4 160 165-340 3-187 (188)
83 PRK14958 DNA polymerase III su 98.1 2.7E-05 5.8E-10 91.7 14.8 182 151-341 13-217 (509)
84 TIGR02397 dnaX_nterm DNA polym 98.1 7.4E-05 1.6E-09 85.9 18.4 184 152-345 12-219 (355)
85 PRK14951 DNA polymerase III su 98.1 4.4E-05 9.5E-10 90.9 16.4 183 151-342 13-223 (618)
86 PRK08084 DNA replication initi 98.1 4.3E-05 9.2E-10 81.2 14.6 165 160-343 30-208 (235)
87 COG4886 Leucine-rich repeat (L 98.1 2.1E-06 4.6E-11 100.3 5.1 142 551-702 141-283 (394)
88 PRK15386 type III secretion pr 98.1 1.2E-06 2.7E-11 96.8 2.9 116 1063-1204 50-185 (426)
89 KOG0989 Replication factor C, 98.1 2.3E-05 4.9E-10 81.3 11.7 186 150-338 32-224 (346)
90 PRK08727 hypothetical protein; 98.1 3.6E-05 7.9E-10 81.6 13.8 170 153-341 18-201 (233)
91 TIGR02903 spore_lon_C ATP-depe 98.1 4.6E-05 9.9E-10 92.3 16.3 196 151-347 151-398 (615)
92 PF13855 LRR_8: Leucine rich r 98.1 2.9E-06 6.3E-11 68.5 4.1 56 551-606 2-60 (61)
93 PRK08691 DNA polymerase III su 98.1 3E-05 6.5E-10 91.8 13.9 183 151-342 13-218 (709)
94 PRK14959 DNA polymerase III su 98.1 0.00013 2.8E-09 86.1 18.4 188 152-349 14-226 (624)
95 COG1474 CDC6 Cdc6-related prot 98.1 0.00019 4.2E-09 80.5 19.0 191 156-347 19-241 (366)
96 PRK14955 DNA polymerase III su 98.0 5.3E-05 1.2E-09 87.3 14.6 180 152-341 14-225 (397)
97 PRK14969 DNA polymerase III su 98.0 5.5E-05 1.2E-09 89.8 15.0 188 152-348 14-225 (527)
98 PRK09087 hypothetical protein; 98.0 8E-05 1.7E-09 78.2 14.6 144 174-348 43-199 (226)
99 PF13855 LRR_8: Leucine rich r 98.0 3.5E-06 7.6E-11 68.0 3.4 57 596-653 2-59 (61)
100 PF13191 AAA_16: AAA ATPase do 98.0 1.3E-05 2.8E-10 82.5 8.1 48 155-202 1-51 (185)
101 PRK09111 DNA polymerase III su 98.0 0.00011 2.4E-09 87.7 16.4 185 151-344 21-233 (598)
102 PF13401 AAA_22: AAA domain; P 98.0 1.4E-05 3E-10 76.8 7.3 107 174-282 3-125 (131)
103 PRK14954 DNA polymerase III su 98.0 0.00014 3E-09 87.1 16.4 184 152-345 14-230 (620)
104 KOG1259 Nischarin, modulator o 98.0 5.4E-07 1.2E-11 91.7 -3.2 107 547-656 304-412 (490)
105 PRK14970 DNA polymerase III su 98.0 0.0002 4.4E-09 82.3 17.2 179 152-339 15-204 (367)
106 TIGR01242 26Sp45 26S proteasom 98.0 4.2E-05 9.1E-10 87.5 11.3 169 150-338 118-328 (364)
107 PRK14952 DNA polymerase III su 97.9 0.00018 3.9E-09 85.5 16.5 188 152-349 11-225 (584)
108 PRK07764 DNA polymerase III su 97.9 0.00016 3.6E-09 89.4 16.3 180 152-341 13-218 (824)
109 PRK07133 DNA polymerase III su 97.9 0.00022 4.7E-09 85.7 16.6 184 152-345 16-221 (725)
110 TIGR00767 rho transcription te 97.9 2.5E-05 5.5E-10 86.2 7.9 84 173-257 166-267 (415)
111 PRK14971 DNA polymerase III su 97.9 0.00033 7.1E-09 84.6 17.5 180 152-341 15-219 (614)
112 PLN03150 hypothetical protein; 97.9 2.6E-05 5.7E-10 95.3 7.9 105 574-686 419-527 (623)
113 PRK03992 proteasome-activating 97.8 0.00015 3.2E-09 83.3 13.0 168 151-338 128-337 (389)
114 KOG1859 Leucine-rich repeat pr 97.8 2.1E-07 4.6E-12 105.7 -9.8 176 500-690 108-295 (1096)
115 PRK14950 DNA polymerase III su 97.8 0.00045 9.7E-09 83.7 17.7 185 152-346 14-223 (585)
116 PHA02544 44 clamp loader, smal 97.8 0.0002 4.4E-09 80.6 13.8 149 151-312 18-171 (316)
117 PTZ00202 tuzin; Provisional 97.8 8.9E-05 1.9E-09 81.6 10.1 156 150-314 258-434 (550)
118 PRK08903 DnaA regulatory inact 97.8 0.00021 4.5E-09 76.1 13.0 169 158-349 23-204 (227)
119 PRK14953 DNA polymerase III su 97.8 0.0006 1.3E-08 79.9 17.5 184 152-344 14-220 (486)
120 PRK06305 DNA polymerase III su 97.8 0.00047 1E-08 80.3 16.5 184 152-345 15-224 (451)
121 PRK05642 DNA replication initi 97.8 0.00037 8.1E-09 73.9 14.2 152 176-346 46-210 (234)
122 PRK08451 DNA polymerase III su 97.8 0.00058 1.3E-08 79.9 16.8 184 151-344 11-218 (535)
123 PRK14948 DNA polymerase III su 97.8 0.00071 1.5E-08 81.7 18.1 185 151-344 13-222 (620)
124 KOG2028 ATPase related to the 97.8 0.00013 2.9E-09 76.9 9.8 149 153-314 137-294 (554)
125 KOG2982 Uncharacterized conser 97.7 1.3E-05 2.9E-10 81.9 2.0 31 832-862 235-265 (418)
126 PRK05563 DNA polymerase III su 97.7 0.00091 2E-08 80.2 17.5 181 151-341 13-217 (559)
127 KOG2120 SCF ubiquitin ligase, 97.7 4.9E-06 1.1E-10 85.0 -1.9 159 938-1135 185-350 (419)
128 TIGR03345 VI_ClpV1 type VI sec 97.7 0.0004 8.6E-09 87.3 14.3 153 151-314 184-363 (852)
129 TIGR03689 pup_AAA proteasome A 97.7 0.00025 5.5E-09 82.3 11.4 160 150-316 178-380 (512)
130 PF12799 LRR_4: Leucine Rich r 97.6 4.2E-05 9E-10 56.2 3.1 37 551-587 2-38 (44)
131 PF14516 AAA_35: AAA-like doma 97.6 0.0017 3.7E-08 72.8 17.3 192 151-350 8-245 (331)
132 KOG0531 Protein phosphatase 1, 97.6 1.1E-05 2.4E-10 94.2 -0.4 131 546-688 91-222 (414)
133 KOG0531 Protein phosphatase 1, 97.6 7.4E-06 1.6E-10 95.7 -2.0 133 548-691 70-203 (414)
134 PRK14965 DNA polymerase III su 97.6 0.00085 1.9E-08 80.8 15.4 188 151-348 13-225 (576)
135 PRK06647 DNA polymerase III su 97.6 0.0014 3.1E-08 78.1 16.9 182 152-343 14-219 (563)
136 PF12799 LRR_4: Leucine Rich r 97.6 8.4E-05 1.8E-09 54.6 4.0 39 596-635 2-40 (44)
137 TIGR02881 spore_V_K stage V sp 97.6 0.00046 1E-08 74.9 11.2 148 154-315 6-192 (261)
138 TIGR02639 ClpA ATP-dependent C 97.6 0.00061 1.3E-08 85.2 13.7 151 152-314 180-358 (731)
139 COG1373 Predicted ATPase (AAA+ 97.6 0.0008 1.7E-08 77.1 13.5 133 158-309 21-162 (398)
140 TIGR02880 cbbX_cfxQ probable R 97.5 0.00051 1.1E-08 75.0 11.3 132 177-315 60-209 (284)
141 KOG1947 Leucine rich repeat pr 97.5 1.6E-05 3.6E-10 96.1 -0.6 97 819-921 187-284 (482)
142 PRK11331 5-methylcytosine-spec 97.5 0.00016 3.5E-09 81.4 7.2 102 154-257 175-284 (459)
143 CHL00181 cbbX CbbX; Provisiona 97.5 0.00065 1.4E-08 74.1 11.5 133 176-315 60-210 (287)
144 PRK14087 dnaA chromosomal repl 97.5 0.00053 1.1E-08 79.9 11.2 166 176-348 142-323 (450)
145 PRK07399 DNA polymerase III su 97.4 0.003 6.5E-08 69.8 15.8 181 153-344 3-221 (314)
146 PF05673 DUF815: Protein of un 97.4 0.0075 1.6E-07 62.1 16.9 121 150-286 23-154 (249)
147 PRK05707 DNA polymerase III su 97.4 0.0049 1.1E-07 68.6 16.7 157 175-344 22-203 (328)
148 CHL00095 clpC Clp protease ATP 97.4 0.00099 2.2E-08 84.4 12.6 149 153-313 178-353 (821)
149 KOG1947 Leucine rich repeat pr 97.4 3.3E-05 7E-10 93.5 -0.7 141 1038-1188 292-442 (482)
150 PRK06620 hypothetical protein; 97.4 0.00076 1.7E-08 70.2 9.5 131 176-338 45-183 (214)
151 PF00308 Bac_DnaA: Bacterial d 97.4 0.00077 1.7E-08 70.6 9.5 160 175-342 34-206 (219)
152 COG2255 RuvB Holliday junction 97.4 0.019 4.1E-07 59.6 18.9 179 150-348 22-227 (332)
153 KOG2543 Origin recognition com 97.3 0.00082 1.8E-08 72.2 8.8 155 154-314 6-193 (438)
154 KOG2227 Pre-initiation complex 97.3 0.0052 1.1E-07 68.1 15.1 208 151-360 147-386 (529)
155 KOG1909 Ran GTPase-activating 97.3 4.7E-05 1E-09 80.3 -0.5 137 546-686 88-253 (382)
156 PTZ00454 26S protease regulato 97.3 0.0036 7.8E-08 71.5 14.1 171 150-338 141-351 (398)
157 PRK11034 clpA ATP-dependent Cl 97.3 0.00088 1.9E-08 82.4 9.6 150 153-314 185-362 (758)
158 PRK10865 protein disaggregatio 97.2 0.0027 5.9E-08 80.3 13.8 152 152-314 176-354 (857)
159 PTZ00361 26 proteosome regulat 97.2 0.0013 2.8E-08 75.5 9.9 149 151-315 180-368 (438)
160 PRK08769 DNA polymerase III su 97.2 0.011 2.4E-07 65.1 16.3 171 160-344 10-208 (319)
161 TIGR00362 DnaA chromosomal rep 97.2 0.0078 1.7E-07 70.2 16.1 158 176-341 137-307 (405)
162 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0027 5.8E-08 80.8 13.1 152 152-314 171-349 (852)
163 KOG1909 Ran GTPase-activating 97.2 0.00016 3.5E-09 76.4 1.6 193 546-780 54-283 (382)
164 PRK08058 DNA polymerase III su 97.2 0.0068 1.5E-07 68.0 14.7 150 156-313 7-181 (329)
165 PF05621 TniB: Bacterial TniB 97.1 0.0077 1.7E-07 64.2 13.6 182 161-342 44-259 (302)
166 TIGR01241 FtsH_fam ATP-depende 97.1 0.0068 1.5E-07 72.5 15.0 170 149-338 50-260 (495)
167 PRK10536 hypothetical protein; 97.1 0.0019 4.2E-08 67.3 8.8 57 152-210 53-109 (262)
168 PF13177 DNA_pol3_delta2: DNA 97.1 0.0045 9.7E-08 61.4 10.9 137 158-302 1-162 (162)
169 PRK08118 topology modulation p 97.1 0.00035 7.6E-09 69.6 3.0 36 176-211 2-38 (167)
170 PRK00149 dnaA chromosomal repl 97.1 0.0059 1.3E-07 72.1 13.7 182 175-364 148-349 (450)
171 PF00004 AAA: ATPase family as 97.1 0.0018 3.9E-08 62.1 7.9 65 178-257 1-70 (132)
172 CHL00176 ftsH cell division pr 97.1 0.0067 1.5E-07 73.4 14.2 165 152-336 181-386 (638)
173 TIGR00763 lon ATP-dependent pr 97.0 0.0026 5.7E-08 80.1 11.1 47 154-200 320-372 (775)
174 PRK14088 dnaA chromosomal repl 97.0 0.0033 7.2E-08 73.3 11.1 156 175-338 130-299 (440)
175 PRK06871 DNA polymerase III su 97.0 0.022 4.7E-07 62.9 16.7 166 161-341 9-200 (325)
176 KOG2982 Uncharacterized conser 97.0 0.00016 3.4E-09 74.3 -0.2 38 571-608 69-110 (418)
177 KOG1859 Leucine-rich repeat pr 97.0 3.1E-05 6.7E-10 88.7 -5.9 107 546-655 183-291 (1096)
178 KOG3665 ZYG-1-like serine/thre 97.0 0.00044 9.5E-09 84.3 3.3 59 546-605 169-230 (699)
179 PRK14086 dnaA chromosomal repl 97.0 0.01 2.2E-07 70.2 14.4 155 176-338 315-482 (617)
180 KOG1644 U2-associated snRNP A' 97.0 0.0015 3.3E-08 63.9 6.2 103 573-682 42-148 (233)
181 KOG3665 ZYG-1-like serine/thre 97.0 0.00021 4.5E-09 87.0 0.4 115 540-655 138-262 (699)
182 KOG0991 Replication factor C, 97.0 0.0022 4.8E-08 63.8 7.2 102 151-257 24-125 (333)
183 TIGR00602 rad24 checkpoint pro 97.0 0.0058 1.3E-07 73.3 12.3 51 150-200 80-135 (637)
184 PRK12608 transcription termina 96.9 0.0037 8.1E-08 69.0 9.7 94 163-257 120-232 (380)
185 PRK08116 hypothetical protein; 96.9 0.0013 2.9E-08 71.0 6.2 98 176-282 115-220 (268)
186 PRK06090 DNA polymerase III su 96.9 0.062 1.3E-06 59.2 18.6 166 161-344 10-201 (319)
187 KOG4579 Leucine-rich repeat (L 96.8 8.7E-05 1.9E-09 67.3 -3.3 100 552-653 29-133 (177)
188 PHA00729 NTP-binding motif con 96.8 0.005 1.1E-07 63.2 9.0 120 165-314 7-140 (226)
189 PRK12422 chromosomal replicati 96.8 0.0071 1.5E-07 70.3 11.3 151 176-336 142-305 (445)
190 COG1222 RPT1 ATP-dependent 26S 96.8 0.031 6.7E-07 60.1 14.3 179 149-349 146-372 (406)
191 PF02562 PhoH: PhoH-like prote 96.7 0.0037 8E-08 63.5 7.3 119 159-282 5-155 (205)
192 PF10443 RNA12: RNA12 protein; 96.7 0.028 6E-07 62.9 14.2 186 159-354 1-288 (431)
193 KOG4579 Leucine-rich repeat (L 96.7 0.00021 4.5E-09 64.9 -1.8 91 547-638 50-142 (177)
194 PRK08181 transposase; Validate 96.7 0.0048 1E-07 66.2 8.1 104 168-282 101-208 (269)
195 PRK06964 DNA polymerase III su 96.6 0.085 1.8E-06 58.7 17.3 164 162-344 9-225 (342)
196 smart00382 AAA ATPases associa 96.6 0.0059 1.3E-07 59.4 7.6 39 175-215 2-40 (148)
197 COG0542 clpA ATP-binding subun 96.6 0.035 7.6E-07 67.2 14.9 111 154-270 491-620 (786)
198 PRK07261 topology modulation p 96.6 0.0056 1.2E-07 61.4 7.1 53 177-229 2-55 (171)
199 CHL00195 ycf46 Ycf46; Provisio 96.5 0.019 4.1E-07 67.2 12.2 170 153-338 227-429 (489)
200 COG0593 DnaA ATPase involved i 96.5 0.033 7.2E-07 62.6 13.4 131 174-315 112-258 (408)
201 COG0470 HolB ATPase involved i 96.5 0.024 5.2E-07 64.3 12.7 140 156-302 3-169 (325)
202 PF04665 Pox_A32: Poxvirus A32 96.4 0.0055 1.2E-07 63.8 6.3 37 175-213 13-49 (241)
203 PF07728 AAA_5: AAA domain (dy 96.4 0.0026 5.6E-08 61.6 3.8 75 178-257 2-77 (139)
204 KOG2035 Replication factor C, 96.4 0.098 2.1E-06 54.1 14.8 230 154-390 13-282 (351)
205 PRK10787 DNA-binding ATP-depen 96.4 0.013 2.9E-07 73.0 10.7 157 153-314 321-506 (784)
206 PRK07993 DNA polymerase III su 96.4 0.083 1.8E-06 59.0 16.0 168 160-342 8-202 (334)
207 COG2812 DnaX DNA polymerase II 96.4 0.02 4.4E-07 66.3 11.4 177 152-337 14-213 (515)
208 TIGR02640 gas_vesic_GvpN gas v 96.4 0.035 7.5E-07 60.2 12.6 56 161-223 9-64 (262)
209 PRK12377 putative replication 96.4 0.0083 1.8E-07 63.5 7.5 75 174-256 100-174 (248)
210 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0051 1.1E-07 67.7 5.6 47 155-201 52-104 (361)
211 KOG0741 AAA+-type ATPase [Post 96.3 0.12 2.6E-06 58.3 15.8 142 174-334 537-704 (744)
212 KOG0731 AAA+-type ATPase conta 96.3 0.034 7.4E-07 66.7 12.6 170 153-341 310-521 (774)
213 TIGR01243 CDC48 AAA family ATP 96.3 0.053 1.1E-06 68.4 15.1 169 152-338 451-657 (733)
214 TIGR02902 spore_lonB ATP-depen 96.3 0.028 6.1E-07 67.3 12.1 48 152-199 63-110 (531)
215 TIGR03345 VI_ClpV1 type VI sec 96.3 0.028 6E-07 71.1 12.4 46 154-199 566-620 (852)
216 COG0466 Lon ATP-dependent Lon 96.2 0.019 4.1E-07 67.4 9.7 141 156-314 325-508 (782)
217 TIGR01243 CDC48 AAA family ATP 96.2 0.034 7.3E-07 70.1 12.8 171 152-340 176-383 (733)
218 PRK09183 transposase/IS protei 96.2 0.0053 1.2E-07 66.0 4.7 26 175-200 102-127 (259)
219 PLN00020 ribulose bisphosphate 96.2 0.062 1.3E-06 58.9 12.5 152 173-339 146-333 (413)
220 cd01133 F1-ATPase_beta F1 ATP 96.2 0.017 3.7E-07 61.4 8.2 54 173-228 67-122 (274)
221 COG2607 Predicted ATPase (AAA+ 96.1 0.033 7.2E-07 56.3 9.6 118 151-284 57-184 (287)
222 PF13207 AAA_17: AAA domain; P 96.1 0.0047 1E-07 58.2 3.7 24 177-200 1-24 (121)
223 COG1875 NYN ribonuclease and A 96.1 0.014 2.9E-07 62.7 7.2 44 154-197 224-267 (436)
224 PRK06526 transposase; Provisio 96.1 0.0041 8.9E-08 66.4 3.5 74 175-257 98-171 (254)
225 PRK04132 replication factor C 96.1 0.11 2.3E-06 64.6 15.9 153 183-343 574-730 (846)
226 KOG0734 AAA+-type ATPase conta 96.0 0.017 3.7E-07 64.8 7.5 49 154-202 307-364 (752)
227 PHA02244 ATPase-like protein 96.0 0.053 1.1E-06 59.9 11.1 35 164-200 110-144 (383)
228 COG1484 DnaC DNA replication p 96.0 0.01 2.3E-07 63.4 5.7 82 166-257 98-179 (254)
229 PRK10865 protein disaggregatio 96.0 0.1 2.2E-06 66.3 15.4 47 153-199 567-622 (857)
230 KOG0730 AAA+-type ATPase [Post 96.0 0.089 1.9E-06 61.3 13.2 146 152-315 432-616 (693)
231 COG5238 RNA1 Ran GTPase-activa 95.8 0.0063 1.4E-07 62.1 3.1 136 548-687 28-198 (388)
232 PF05659 RPW8: Arabidopsis bro 95.8 0.041 8.8E-07 52.7 8.3 110 2-127 3-113 (147)
233 KOG1644 U2-associated snRNP A' 95.8 0.0086 1.9E-07 58.8 3.7 83 546-628 60-150 (233)
234 KOG0743 AAA+-type ATPase [Post 95.8 1.3 2.8E-05 49.9 20.7 154 176-352 236-417 (457)
235 PF01695 IstB_IS21: IstB-like 95.8 0.013 2.8E-07 59.0 5.1 72 174-257 46-120 (178)
236 COG3267 ExeA Type II secretory 95.7 0.41 9E-06 49.5 15.5 171 172-347 48-248 (269)
237 PRK06696 uridine kinase; Valid 95.7 0.015 3.2E-07 61.5 5.4 44 158-201 2-48 (223)
238 KOG2004 Mitochondrial ATP-depe 95.6 0.15 3.3E-06 59.8 13.4 49 154-202 411-465 (906)
239 PRK08939 primosomal protein Dn 95.6 0.021 4.6E-07 62.8 6.6 116 158-282 135-260 (306)
240 PRK06835 DNA replication prote 95.6 0.017 3.6E-07 64.1 5.8 37 175-213 183-219 (329)
241 TIGR02639 ClpA ATP-dependent C 95.6 0.027 5.8E-07 70.7 7.9 57 154-215 454-519 (731)
242 TIGR03346 chaperone_ClpB ATP-d 95.6 0.025 5.3E-07 72.2 7.7 47 154-200 565-620 (852)
243 PRK06921 hypothetical protein; 95.5 0.011 2.4E-07 63.8 3.8 39 174-213 116-154 (266)
244 PRK12727 flagellar biosynthesi 95.5 0.17 3.7E-06 58.8 13.2 39 175-213 350-388 (559)
245 PRK15455 PrkA family serine pr 95.5 0.017 3.8E-07 66.9 5.2 48 153-200 75-128 (644)
246 KOG2739 Leucine-rich acidic nu 95.5 0.0063 1.4E-07 62.5 1.5 59 549-608 42-104 (260)
247 COG1618 Predicted nucleotide k 95.4 0.02 4.4E-07 54.2 4.6 31 176-207 6-36 (179)
248 PRK07952 DNA replication prote 95.4 0.045 9.9E-07 57.8 7.9 92 162-261 84-180 (244)
249 PF00448 SRP54: SRP54-type pro 95.4 0.044 9.6E-07 56.1 7.5 58 175-234 1-59 (196)
250 KOG0735 AAA+-type ATPase [Post 95.3 0.11 2.3E-06 60.9 10.8 159 175-343 431-615 (952)
251 PRK11889 flhF flagellar biosyn 95.3 0.12 2.5E-06 57.7 10.8 58 174-233 240-298 (436)
252 COG1102 Cmk Cytidylate kinase 95.3 0.031 6.7E-07 52.9 5.2 46 177-235 2-47 (179)
253 CHL00095 clpC Clp protease ATP 95.3 0.048 1E-06 69.4 8.8 46 154-199 509-563 (821)
254 PF00158 Sigma54_activat: Sigm 95.2 0.084 1.8E-06 52.5 8.6 44 156-199 1-46 (168)
255 PF03215 Rad17: Rad17 cell cyc 95.2 0.12 2.6E-06 61.1 11.2 55 154-212 19-78 (519)
256 PRK14722 flhF flagellar biosyn 95.2 0.074 1.6E-06 59.7 9.0 82 175-256 137-226 (374)
257 PF13604 AAA_30: AAA domain; P 95.1 0.062 1.3E-06 55.3 7.6 101 172-281 15-129 (196)
258 COG1223 Predicted ATPase (AAA+ 95.1 0.12 2.5E-06 52.9 9.1 153 152-315 119-298 (368)
259 PRK10733 hflB ATP-dependent me 95.1 0.2 4.2E-06 61.8 13.2 124 176-316 186-337 (644)
260 PF00006 ATP-synt_ab: ATP synt 95.1 0.038 8.2E-07 57.1 5.8 57 166-226 5-63 (215)
261 KOG1969 DNA replication checkp 95.0 0.054 1.2E-06 63.6 7.4 75 174-257 325-399 (877)
262 cd01123 Rad51_DMC1_radA Rad51_ 95.0 0.077 1.7E-06 56.8 8.4 58 174-232 18-79 (235)
263 PRK08699 DNA polymerase III su 94.9 0.17 3.6E-06 56.4 10.8 148 175-340 21-202 (325)
264 KOG2228 Origin recognition com 94.9 0.21 4.5E-06 53.4 10.5 159 153-314 23-219 (408)
265 PRK11034 clpA ATP-dependent Cl 94.8 0.061 1.3E-06 66.6 7.8 47 154-200 458-513 (758)
266 cd01134 V_A-ATPase_A V/A-type 94.8 0.13 2.8E-06 56.3 9.0 57 166-226 147-205 (369)
267 PRK06547 hypothetical protein; 94.8 0.044 9.5E-07 54.8 5.2 35 166-200 6-40 (172)
268 KOG2739 Leucine-rich acidic nu 94.7 0.013 2.9E-07 60.2 1.4 106 570-682 40-151 (260)
269 PRK07667 uridine kinase; Provi 94.7 0.044 9.5E-07 56.3 5.3 38 164-201 4-43 (193)
270 TIGR03499 FlhF flagellar biosy 94.7 0.093 2E-06 57.4 8.0 41 174-214 193-233 (282)
271 TIGR01425 SRP54_euk signal rec 94.7 1.5 3.3E-05 50.3 17.7 28 174-201 99-126 (429)
272 KOG0739 AAA+-type ATPase [Post 94.7 0.27 5.9E-06 51.3 10.5 161 156-336 135-333 (439)
273 PRK14974 cell division protein 94.6 0.25 5.5E-06 54.9 11.2 58 174-234 139-198 (336)
274 PF13238 AAA_18: AAA domain; P 94.6 0.028 6E-07 53.5 3.3 22 178-199 1-22 (129)
275 cd01135 V_A-ATPase_B V/A-type 94.6 0.12 2.6E-06 55.0 8.2 91 173-263 67-185 (276)
276 PRK09270 nucleoside triphospha 94.6 0.05 1.1E-06 57.8 5.5 29 173-201 31-59 (229)
277 PRK12724 flagellar biosynthesi 94.6 0.12 2.6E-06 58.4 8.6 25 175-199 223-247 (432)
278 PRK14721 flhF flagellar biosyn 94.6 0.21 4.7E-06 57.0 10.7 61 174-234 190-251 (420)
279 KOG0733 Nuclear AAA ATPase (VC 94.6 0.66 1.4E-05 53.7 14.2 123 175-315 545-693 (802)
280 KOG2123 Uncharacterized conser 94.5 0.0021 4.6E-08 65.7 -4.7 79 574-654 20-99 (388)
281 PRK07132 DNA polymerase III su 94.5 1.1 2.5E-05 49.0 15.8 167 163-343 5-184 (299)
282 COG0464 SpoVK ATPases of the A 94.5 0.27 5.9E-06 59.1 12.2 130 174-316 275-425 (494)
283 PRK13531 regulatory ATPase Rav 94.5 0.059 1.3E-06 61.9 6.0 51 154-206 20-70 (498)
284 KOG0733 Nuclear AAA ATPase (VC 94.5 0.74 1.6E-05 53.3 14.2 92 152-256 188-293 (802)
285 KOG3864 Uncharacterized conser 94.4 0.0065 1.4E-07 59.7 -1.5 87 1067-1162 103-189 (221)
286 PRK05541 adenylylsulfate kinas 94.4 0.056 1.2E-06 54.7 5.2 36 174-211 6-41 (176)
287 cd02019 NK Nucleoside/nucleoti 94.4 0.036 7.8E-07 45.7 3.0 23 177-199 1-23 (69)
288 KOG0744 AAA+-type ATPase [Post 94.4 0.027 5.9E-07 59.3 2.7 28 175-202 177-204 (423)
289 PF03308 ArgK: ArgK protein; 94.3 0.08 1.7E-06 55.1 6.0 59 162-220 14-74 (266)
290 PRK14723 flhF flagellar biosyn 94.3 0.24 5.1E-06 60.6 10.8 60 175-234 185-245 (767)
291 TIGR02012 tigrfam_recA protein 94.3 0.079 1.7E-06 58.2 6.3 44 174-219 54-97 (321)
292 KOG3347 Predicted nucleotide k 94.3 0.039 8.4E-07 51.3 3.2 26 175-200 7-32 (176)
293 PF00560 LRR_1: Leucine Rich R 94.3 0.018 3.9E-07 35.0 0.8 21 596-616 1-21 (22)
294 COG1428 Deoxynucleoside kinase 94.3 0.037 8.1E-07 55.3 3.3 27 175-201 4-30 (216)
295 PF00485 PRK: Phosphoribulokin 94.2 0.042 9E-07 56.7 3.8 25 177-201 1-25 (194)
296 COG2884 FtsE Predicted ATPase 94.2 0.084 1.8E-06 51.6 5.5 29 173-201 26-54 (223)
297 cd01120 RecA-like_NTPases RecA 94.2 0.12 2.7E-06 51.5 7.2 39 177-217 1-39 (165)
298 PRK11608 pspF phage shock prot 94.2 0.14 3.1E-06 57.3 8.2 45 154-198 6-52 (326)
299 PRK05480 uridine/cytidine kina 94.2 0.048 1E-06 57.1 4.1 27 173-199 4-30 (209)
300 TIGR01817 nifA Nif-specific re 94.1 0.27 5.8E-06 59.7 11.1 50 151-200 193-244 (534)
301 PF14532 Sigma54_activ_2: Sigm 94.1 0.024 5.3E-07 54.6 1.7 104 157-283 1-110 (138)
302 PRK08233 hypothetical protein; 94.1 0.043 9.4E-07 56.0 3.7 26 175-200 3-28 (182)
303 PRK05703 flhF flagellar biosyn 94.0 0.21 4.4E-06 57.9 9.3 81 175-255 221-309 (424)
304 COG1703 ArgK Putative periplas 94.0 0.072 1.6E-06 56.1 5.0 62 164-225 38-101 (323)
305 PHA02774 E1; Provisional 94.0 0.13 2.8E-06 60.1 7.4 50 162-215 420-470 (613)
306 KOG1514 Origin recognition com 94.0 1.5 3.3E-05 51.9 15.9 190 154-346 396-623 (767)
307 PF12775 AAA_7: P-loop contain 94.0 0.036 7.9E-07 60.0 2.9 90 164-257 23-112 (272)
308 cd02117 NifH_like This family 94.0 0.063 1.4E-06 56.3 4.6 26 176-201 1-26 (212)
309 TIGR00390 hslU ATP-dependent p 93.9 0.14 3.1E-06 57.6 7.3 76 154-229 12-103 (441)
310 PF01583 APS_kinase: Adenylyls 93.9 0.1 2.2E-06 50.5 5.4 36 175-212 2-37 (156)
311 COG3640 CooC CO dehydrogenase 93.9 0.11 2.5E-06 52.6 5.9 41 177-218 2-42 (255)
312 cd00983 recA RecA is a bacter 93.9 0.11 2.3E-06 57.2 6.3 44 174-219 54-97 (325)
313 TIGR02237 recomb_radB DNA repa 93.9 0.14 3E-06 53.6 7.0 47 174-223 11-57 (209)
314 PRK09354 recA recombinase A; P 93.9 0.12 2.6E-06 57.3 6.6 53 174-233 59-111 (349)
315 PF13671 AAA_33: AAA domain; P 93.9 0.052 1.1E-06 52.8 3.5 24 177-200 1-24 (143)
316 TIGR00235 udk uridine kinase. 93.9 0.057 1.2E-06 56.3 4.0 28 173-200 4-31 (207)
317 PRK05342 clpX ATP-dependent pr 93.8 0.12 2.7E-06 59.3 6.9 46 155-200 72-133 (412)
318 PF00560 LRR_1: Leucine Rich R 93.8 0.028 6E-07 34.2 0.9 21 551-571 1-21 (22)
319 PRK12597 F0F1 ATP synthase sub 93.8 0.16 3.5E-06 58.6 7.8 84 173-257 141-249 (461)
320 PTZ00301 uridine kinase; Provi 93.8 0.059 1.3E-06 55.7 3.9 26 175-200 3-28 (210)
321 TIGR02238 recomb_DMC1 meiotic 93.8 0.18 3.9E-06 55.7 7.9 59 174-233 95-157 (313)
322 PRK06762 hypothetical protein; 93.8 0.057 1.2E-06 54.1 3.8 25 175-199 2-26 (166)
323 PF08423 Rad51: Rad51; InterP 93.8 0.15 3.2E-06 54.8 7.0 56 175-231 38-97 (256)
324 PRK00771 signal recognition pa 93.7 0.27 5.9E-06 56.7 9.5 59 174-234 94-153 (437)
325 PRK13230 nitrogenase reductase 93.7 0.078 1.7E-06 58.3 5.0 26 176-201 2-27 (279)
326 PF07693 KAP_NTPase: KAP famil 93.7 0.55 1.2E-05 53.1 12.1 43 160-202 2-47 (325)
327 PRK03839 putative kinase; Prov 93.7 0.056 1.2E-06 55.0 3.5 24 177-200 2-25 (180)
328 PRK13236 nitrogenase reductase 93.7 0.087 1.9E-06 58.3 5.3 30 172-201 3-32 (296)
329 PLN03187 meiotic recombination 93.6 0.22 4.8E-06 55.5 8.3 59 174-233 125-187 (344)
330 PF07726 AAA_3: ATPase family 93.6 0.048 1E-06 50.2 2.5 28 178-207 2-29 (131)
331 PTZ00185 ATPase alpha subunit; 93.6 0.25 5.4E-06 56.8 8.6 85 173-257 187-301 (574)
332 KOG2123 Uncharacterized conser 93.6 0.004 8.7E-08 63.8 -4.8 78 572-649 40-123 (388)
333 COG0542 clpA ATP-binding subun 93.6 0.28 6E-06 59.7 9.5 152 152-314 168-346 (786)
334 TIGR01360 aden_kin_iso1 adenyl 93.6 0.065 1.4E-06 55.0 3.8 26 174-199 2-27 (188)
335 PLN03186 DNA repair protein RA 93.6 0.21 4.6E-06 55.7 8.1 59 174-233 122-184 (342)
336 PRK08972 fliI flagellum-specif 93.6 0.11 2.3E-06 59.2 5.7 86 174-263 161-271 (444)
337 PRK13233 nifH nitrogenase redu 93.5 0.078 1.7E-06 58.2 4.6 25 176-200 3-27 (275)
338 KOG3864 Uncharacterized conser 93.5 0.011 2.3E-07 58.3 -1.9 68 1063-1137 123-190 (221)
339 PRK00625 shikimate kinase; Pro 93.5 0.061 1.3E-06 53.8 3.3 24 177-200 2-25 (173)
340 PRK08927 fliI flagellum-specif 93.5 0.22 4.7E-06 57.0 8.0 81 173-257 156-260 (442)
341 PRK15429 formate hydrogenlyase 93.4 0.19 4.2E-06 62.9 8.3 49 152-200 374-424 (686)
342 COG0572 Udk Uridine kinase [Nu 93.4 0.079 1.7E-06 53.9 3.9 29 174-202 7-35 (218)
343 PF00910 RNA_helicase: RNA hel 93.4 0.06 1.3E-06 49.1 2.8 24 178-201 1-24 (107)
344 PRK04040 adenylate kinase; Pro 93.4 0.074 1.6E-06 54.1 3.7 25 176-200 3-27 (188)
345 PF13306 LRR_5: Leucine rich r 93.4 0.3 6.6E-06 46.3 7.8 105 541-651 3-111 (129)
346 PRK05917 DNA polymerase III su 93.3 1.9 4.1E-05 46.7 14.4 131 162-301 5-154 (290)
347 TIGR01650 PD_CobS cobaltochela 93.3 0.21 4.5E-06 54.7 7.2 62 154-222 45-106 (327)
348 PRK13235 nifH nitrogenase redu 93.3 0.095 2.1E-06 57.5 4.7 26 176-201 2-27 (274)
349 PRK05022 anaerobic nitric oxid 93.3 0.28 6E-06 58.9 9.0 61 153-215 186-248 (509)
350 PRK13232 nifH nitrogenase redu 93.3 0.093 2E-06 57.5 4.6 26 176-201 2-27 (273)
351 TIGR02030 BchI-ChlI magnesium 93.3 0.12 2.7E-06 57.5 5.6 47 153-199 3-49 (337)
352 TIGR00554 panK_bact pantothena 93.2 0.27 5.8E-06 53.5 7.8 28 173-200 60-87 (290)
353 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.2 0.35 7.5E-06 46.9 8.0 96 174-286 25-130 (144)
354 TIGR02239 recomb_RAD51 DNA rep 93.2 0.26 5.6E-06 54.7 7.9 59 174-233 95-157 (316)
355 TIGR02974 phageshock_pspF psp 93.2 0.29 6.2E-06 54.9 8.3 44 157-200 2-47 (329)
356 KOG0728 26S proteasome regulat 93.1 0.52 1.1E-05 47.9 8.9 128 173-314 179-331 (404)
357 KOG0729 26S proteasome regulat 93.1 0.15 3.2E-06 52.1 5.2 50 152-201 175-237 (435)
358 PRK13765 ATP-dependent proteas 93.1 0.16 3.6E-06 61.4 6.6 81 150-234 27-107 (637)
359 cd03238 ABC_UvrA The excision 93.1 0.19 4.2E-06 50.3 6.1 24 174-197 20-43 (176)
360 PRK10867 signal recognition pa 93.0 0.29 6.3E-06 56.4 8.3 29 173-201 98-126 (433)
361 COG0541 Ffh Signal recognition 93.0 11 0.00023 42.8 19.7 61 174-236 99-160 (451)
362 TIGR02858 spore_III_AA stage I 93.0 0.35 7.7E-06 52.1 8.4 115 164-285 99-231 (270)
363 PRK12723 flagellar biosynthesi 93.0 0.23 5.1E-06 56.3 7.3 82 174-255 173-264 (388)
364 TIGR00959 ffh signal recogniti 93.0 0.31 6.6E-06 56.2 8.3 60 173-233 97-157 (428)
365 COG1419 FlhF Flagellar GTP-bin 92.9 0.5 1.1E-05 52.8 9.5 72 163-235 187-264 (407)
366 cd03115 SRP The signal recogni 92.9 0.35 7.6E-06 48.8 7.8 25 177-201 2-26 (173)
367 PF06309 Torsin: Torsin; Inte 92.9 0.22 4.7E-06 45.9 5.5 45 155-199 26-77 (127)
368 PRK06995 flhF flagellar biosyn 92.9 0.39 8.4E-06 55.9 8.9 59 175-233 256-315 (484)
369 PRK09280 F0F1 ATP synthase sub 92.8 0.34 7.4E-06 55.8 8.3 84 173-257 142-250 (463)
370 PF13245 AAA_19: Part of AAA d 92.8 0.27 5.8E-06 41.3 5.6 26 174-199 9-35 (76)
371 TIGR00382 clpX endopeptidase C 92.8 0.32 6.9E-06 55.6 8.0 47 154-200 77-141 (413)
372 PF03205 MobB: Molybdopterin g 92.8 0.11 2.4E-06 49.9 3.8 39 176-215 1-39 (140)
373 PRK06002 fliI flagellum-specif 92.8 0.2 4.4E-06 57.3 6.5 81 174-257 164-266 (450)
374 COG1936 Predicted nucleotide k 92.8 0.081 1.8E-06 51.0 2.7 20 177-196 2-21 (180)
375 TIGR03305 alt_F1F0_F1_bet alte 92.8 0.32 6.9E-06 55.9 7.9 90 173-263 136-251 (449)
376 COG0003 ArsA Predicted ATPase 92.7 0.21 4.5E-06 55.0 6.2 48 175-224 2-49 (322)
377 PRK10463 hydrogenase nickel in 92.7 0.19 4.1E-06 54.1 5.7 37 165-201 94-130 (290)
378 TIGR00150 HI0065_YjeE ATPase, 92.7 0.21 4.5E-06 47.0 5.2 28 174-201 21-48 (133)
379 CHL00081 chlI Mg-protoporyphyr 92.7 0.14 3E-06 57.0 4.8 49 152-200 15-63 (350)
380 TIGR01359 UMP_CMP_kin_fam UMP- 92.6 0.084 1.8E-06 53.9 3.0 24 177-200 1-24 (183)
381 PRK00131 aroK shikimate kinase 92.6 0.11 2.4E-06 52.6 3.8 26 175-200 4-29 (175)
382 PRK00889 adenylylsulfate kinas 92.6 0.12 2.6E-06 52.2 4.0 28 174-201 3-30 (175)
383 cd02024 NRK1 Nicotinamide ribo 92.6 0.088 1.9E-06 53.1 2.9 23 177-199 1-23 (187)
384 PRK05201 hslU ATP-dependent pr 92.6 0.24 5.3E-06 55.8 6.6 76 154-229 15-106 (443)
385 COG0467 RAD55 RecA-superfamily 92.6 0.3 6.5E-06 53.1 7.3 55 173-232 21-75 (260)
386 COG1224 TIP49 DNA helicase TIP 92.6 0.47 1E-05 51.2 8.2 84 152-235 37-127 (450)
387 cd03214 ABC_Iron-Siderophores_ 92.6 0.24 5.2E-06 50.3 6.2 109 174-286 24-161 (180)
388 cd02025 PanK Pantothenate kina 92.5 0.21 4.5E-06 52.4 5.7 24 177-200 1-24 (220)
389 CHL00060 atpB ATP synthase CF1 92.5 0.5 1.1E-05 54.7 9.1 55 173-228 159-214 (494)
390 KOG0738 AAA+-type ATPase [Post 92.5 0.46 1E-05 51.8 8.1 28 175-202 245-272 (491)
391 TIGR01281 DPOR_bchL light-inde 92.5 0.15 3.1E-06 55.9 4.7 24 177-200 2-25 (268)
392 PRK13407 bchI magnesium chelat 92.4 0.14 3.1E-06 56.8 4.6 48 152-199 6-53 (334)
393 cd01131 PilT Pilus retraction 92.4 0.16 3.4E-06 52.4 4.6 25 176-200 2-26 (198)
394 PRK12678 transcription termina 92.4 0.17 3.8E-06 58.6 5.2 51 166-217 406-458 (672)
395 PRK08149 ATP synthase SpaL; Va 92.3 0.26 5.7E-06 56.3 6.6 81 173-257 149-253 (428)
396 cd01394 radB RadB. The archaea 92.3 0.32 7E-06 51.2 7.0 43 174-218 18-60 (218)
397 PRK09361 radB DNA repair and r 92.3 0.32 6.8E-06 51.6 6.9 46 174-222 22-67 (225)
398 cd02023 UMPK Uridine monophosp 92.3 0.095 2E-06 54.3 2.8 23 177-199 1-23 (198)
399 PRK10751 molybdopterin-guanine 92.3 0.15 3.2E-06 50.6 3.9 28 174-201 5-32 (173)
400 PRK13185 chlL protochlorophyll 92.2 0.17 3.7E-06 55.4 4.9 26 176-201 3-28 (270)
401 PRK13947 shikimate kinase; Pro 92.2 0.11 2.5E-06 52.2 3.2 25 177-201 3-27 (171)
402 cd02020 CMPK Cytidine monophos 92.2 0.11 2.4E-06 50.7 3.0 24 177-200 1-24 (147)
403 PRK06851 hypothetical protein; 92.2 1.2 2.5E-05 50.2 11.2 45 172-217 211-255 (367)
404 PRK13949 shikimate kinase; Pro 92.1 0.13 2.8E-06 51.5 3.4 24 177-200 3-26 (169)
405 cd01132 F1_ATPase_alpha F1 ATP 92.1 0.48 1E-05 50.5 7.8 88 173-264 67-181 (274)
406 PRK04296 thymidine kinase; Pro 92.1 0.12 2.6E-06 52.9 3.3 104 176-285 3-118 (190)
407 TIGR00764 lon_rel lon-related 92.1 0.36 7.8E-06 58.8 7.8 78 152-233 16-93 (608)
408 cd01121 Sms Sms (bacterial rad 92.1 0.47 1E-05 53.8 8.3 40 175-216 82-121 (372)
409 PRK06217 hypothetical protein; 92.1 0.12 2.6E-06 52.7 3.2 34 177-211 3-38 (183)
410 COG0563 Adk Adenylate kinase a 92.1 0.12 2.7E-06 51.7 3.2 25 177-201 2-26 (178)
411 KOG1532 GTPase XAB1, interacts 92.1 0.18 3.9E-06 52.0 4.3 29 174-202 18-46 (366)
412 PRK05439 pantothenate kinase; 92.0 0.43 9.3E-06 52.3 7.5 28 173-200 84-111 (311)
413 PRK13234 nifH nitrogenase redu 92.0 0.2 4.3E-06 55.4 5.1 28 174-201 3-30 (295)
414 PTZ00035 Rad51 protein; Provis 92.0 0.58 1.3E-05 52.5 8.8 59 174-233 117-179 (337)
415 cd02028 UMPK_like Uridine mono 92.0 0.12 2.7E-06 52.2 3.2 24 177-200 1-24 (179)
416 TIGR02322 phosphon_PhnN phosph 92.0 0.13 2.9E-06 52.2 3.5 25 176-200 2-26 (179)
417 PF11868 DUF3388: Protein of u 92.0 0.22 4.8E-06 46.8 4.4 37 171-216 50-88 (192)
418 cd00227 CPT Chloramphenicol (C 92.0 0.13 2.9E-06 51.9 3.4 25 176-200 3-27 (175)
419 PRK07276 DNA polymerase III su 92.0 4 8.7E-05 44.4 14.8 140 161-311 9-172 (290)
420 TIGR01040 V-ATPase_V1_B V-type 92.0 0.4 8.7E-06 54.8 7.4 91 173-263 139-266 (466)
421 cd01393 recA_like RecA is a b 92.0 0.4 8.6E-06 50.9 7.2 53 174-229 18-76 (226)
422 cd02021 GntK Gluconate kinase 92.0 0.12 2.5E-06 50.8 2.9 23 177-199 1-23 (150)
423 KOG0924 mRNA splicing factor A 92.0 0.34 7.3E-06 56.3 6.7 111 164-282 362-509 (1042)
424 PF06068 TIP49: TIP49 C-termin 91.9 0.22 4.7E-06 54.6 5.1 79 152-233 22-110 (398)
425 TIGR00064 ftsY signal recognit 91.9 0.26 5.7E-06 53.4 5.7 40 173-214 70-109 (272)
426 PRK12726 flagellar biosynthesi 91.9 0.53 1.1E-05 52.5 8.0 58 174-233 205-263 (407)
427 COG2019 AdkA Archaeal adenylat 91.8 0.16 3.5E-06 48.5 3.4 25 175-199 4-28 (189)
428 KOG1970 Checkpoint RAD17-RFC c 91.8 1.9 4.2E-05 49.6 12.3 48 160-211 88-142 (634)
429 PF02374 ArsA_ATPase: Anion-tr 91.8 0.25 5.4E-06 54.6 5.6 42 176-219 2-43 (305)
430 KOG0727 26S proteasome regulat 91.8 2.1 4.5E-05 43.7 11.3 50 153-202 154-216 (408)
431 PRK14530 adenylate kinase; Pro 91.8 0.14 3.1E-06 53.7 3.5 25 176-200 4-28 (215)
432 PF01078 Mg_chelatase: Magnesi 91.8 0.23 5E-06 50.3 4.7 45 152-198 1-45 (206)
433 TIGR00073 hypB hydrogenase acc 91.7 0.27 5.8E-06 51.2 5.5 32 169-200 16-47 (207)
434 COG1066 Sms Predicted ATP-depe 91.7 0.58 1.3E-05 51.8 8.0 75 175-255 93-178 (456)
435 PRK06936 type III secretion sy 91.7 0.47 1E-05 54.4 7.6 41 173-217 160-200 (439)
436 TIGR01069 mutS2 MutS2 family p 91.7 0.11 2.3E-06 65.0 2.8 178 173-365 320-521 (771)
437 TIGR01039 atpD ATP synthase, F 91.7 0.53 1.2E-05 54.0 8.1 90 173-263 141-256 (461)
438 TIGR03324 alt_F1F0_F1_al alter 91.6 0.52 1.1E-05 54.7 8.0 87 173-263 160-273 (497)
439 PRK12339 2-phosphoglycerate ki 91.6 0.17 3.7E-06 51.8 3.8 26 175-200 3-28 (197)
440 PF00625 Guanylate_kin: Guanyl 91.6 0.23 4.9E-06 50.6 4.7 37 175-213 2-38 (183)
441 PRK13975 thymidylate kinase; P 91.5 0.16 3.5E-06 52.5 3.5 26 176-201 3-28 (196)
442 COG4608 AppF ABC-type oligopep 91.5 0.37 8.1E-06 50.6 6.0 112 174-288 38-175 (268)
443 KOG4252 GTP-binding protein [S 91.5 0.33 7.1E-06 46.4 5.0 38 176-214 21-58 (246)
444 cd01136 ATPase_flagellum-secre 91.4 0.43 9.4E-06 52.6 6.8 80 174-257 68-171 (326)
445 KOG0736 Peroxisome assembly fa 91.4 0.37 8E-06 57.2 6.5 87 153-257 671-776 (953)
446 PRK05057 aroK shikimate kinase 91.3 0.18 3.9E-06 50.6 3.6 26 175-200 4-29 (172)
447 PRK03846 adenylylsulfate kinas 91.3 0.21 4.5E-06 51.7 4.0 29 172-200 21-49 (198)
448 TIGR03263 guanyl_kin guanylate 91.3 0.15 3.2E-06 51.9 2.9 24 176-199 2-25 (180)
449 TIGR02329 propionate_PrpR prop 91.2 2.2 4.8E-05 51.0 13.0 47 153-199 211-259 (526)
450 PF03266 NTPase_1: NTPase; In 91.2 0.18 3.9E-06 50.1 3.4 24 178-201 2-25 (168)
451 cd00464 SK Shikimate kinase (S 91.2 0.18 3.8E-06 49.8 3.3 23 178-200 2-24 (154)
452 PRK13695 putative NTPase; Prov 91.2 0.27 5.9E-06 49.6 4.8 34 177-211 2-35 (174)
453 PF13504 LRR_7: Leucine rich r 91.2 0.14 3E-06 28.8 1.4 16 596-611 2-17 (17)
454 TIGR03496 FliI_clade1 flagella 91.2 0.31 6.8E-06 55.8 5.7 39 174-216 136-174 (411)
455 COG0703 AroK Shikimate kinase 91.2 0.18 4E-06 49.3 3.2 27 176-202 3-29 (172)
456 TIGR03881 KaiC_arch_4 KaiC dom 91.2 0.66 1.4E-05 49.3 7.9 55 174-233 19-73 (229)
457 CHL00059 atpA ATP synthase CF1 91.2 0.59 1.3E-05 54.0 7.8 88 173-263 139-252 (485)
458 PRK05688 fliI flagellum-specif 91.1 0.52 1.1E-05 54.2 7.3 80 174-257 167-270 (451)
459 PF08298 AAA_PrkA: PrkA AAA do 91.1 0.32 7E-06 53.3 5.4 48 154-201 61-114 (358)
460 PRK13948 shikimate kinase; Pro 91.1 0.21 4.5E-06 50.4 3.7 28 173-200 8-35 (182)
461 PRK07594 type III secretion sy 91.1 0.34 7.3E-06 55.6 5.8 49 173-225 153-202 (433)
462 PRK14527 adenylate kinase; Pro 91.1 0.22 4.7E-06 51.2 3.9 29 173-201 4-32 (191)
463 COG5238 RNA1 Ran GTPase-activa 91.1 0.42 9.1E-06 49.4 5.7 124 569-692 26-175 (388)
464 TIGR00176 mobB molybdopterin-g 91.1 0.18 4E-06 49.4 3.2 33 177-210 1-33 (155)
465 PF08477 Miro: Miro-like prote 90.9 0.2 4.3E-06 46.8 3.2 23 178-200 2-24 (119)
466 PRK00300 gmk guanylate kinase; 90.9 0.2 4.4E-06 52.2 3.6 26 174-199 4-29 (205)
467 PRK05922 type III secretion sy 90.9 0.63 1.4E-05 53.3 7.7 80 174-257 156-259 (434)
468 PRK06820 type III secretion sy 90.9 0.64 1.4E-05 53.5 7.7 39 174-216 162-200 (440)
469 PRK09099 type III secretion sy 90.9 0.46 1E-05 54.7 6.6 81 173-257 161-265 (441)
470 PRK09435 membrane ATPase/prote 90.9 0.59 1.3E-05 51.9 7.2 40 163-202 42-83 (332)
471 cd02032 Bchl_like This family 90.9 0.28 6.1E-06 53.6 4.8 25 177-201 2-26 (267)
472 PF00154 RecA: recA bacterial 90.8 0.87 1.9E-05 50.0 8.4 54 174-234 52-105 (322)
473 PRK10820 DNA-binding transcrip 90.8 0.72 1.6E-05 55.4 8.6 48 152-199 202-251 (520)
474 cd00071 GMPK Guanosine monopho 90.7 0.18 3.8E-06 48.4 2.7 24 177-200 1-24 (137)
475 PRK13946 shikimate kinase; Pro 90.7 0.21 4.6E-06 50.9 3.4 26 175-200 10-35 (184)
476 PF13086 AAA_11: AAA domain; P 90.7 0.54 1.2E-05 50.1 6.8 64 163-228 7-75 (236)
477 TIGR01313 therm_gnt_kin carboh 90.7 0.17 3.8E-06 50.4 2.7 23 178-200 1-23 (163)
478 TIGR03498 FliI_clade3 flagella 90.7 0.46 1E-05 54.4 6.4 27 174-200 139-165 (418)
479 COG1763 MobB Molybdopterin-gua 90.7 0.24 5.2E-06 48.2 3.5 28 175-202 2-29 (161)
480 cd01878 HflX HflX subfamily. 90.7 0.58 1.3E-05 48.7 6.8 27 173-199 39-65 (204)
481 cd02027 APSK Adenosine 5'-phos 90.6 0.21 4.5E-06 48.8 3.1 24 177-200 1-24 (149)
482 PF13521 AAA_28: AAA domain; P 90.6 0.2 4.4E-06 49.9 3.1 21 178-198 2-22 (163)
483 COG1124 DppF ABC-type dipeptid 90.6 0.25 5.5E-06 50.7 3.7 27 174-200 32-58 (252)
484 PRK14737 gmk guanylate kinase; 90.6 0.23 5.1E-06 50.4 3.5 26 174-199 3-28 (186)
485 TIGR00750 lao LAO/AO transport 90.5 0.5 1.1E-05 52.4 6.4 38 165-202 22-61 (300)
486 PLN02200 adenylate kinase fami 90.5 0.25 5.5E-06 52.3 3.8 27 174-200 42-68 (234)
487 cd01672 TMPK Thymidine monopho 90.5 0.62 1.3E-05 48.2 6.8 24 177-200 2-25 (200)
488 PF03193 DUF258: Protein of un 90.5 0.37 8.1E-06 47.0 4.6 34 163-199 26-59 (161)
489 PRK04301 radA DNA repair and r 90.4 0.6 1.3E-05 52.3 7.0 57 174-231 101-161 (317)
490 PRK10078 ribose 1,5-bisphospho 90.4 0.21 4.5E-06 51.0 3.0 24 176-199 3-26 (186)
491 TIGR01287 nifH nitrogenase iro 90.3 0.24 5.3E-06 54.3 3.7 37 176-214 1-37 (275)
492 TIGR01041 ATP_syn_B_arch ATP s 90.3 0.95 2.1E-05 52.5 8.5 91 173-263 139-257 (458)
493 TIGR02236 recomb_radA DNA repa 90.3 0.61 1.3E-05 52.2 6.9 57 174-231 94-154 (310)
494 TIGR00041 DTMP_kinase thymidyl 90.3 0.67 1.5E-05 47.8 6.8 26 176-201 4-29 (195)
495 PRK15453 phosphoribulokinase; 90.3 0.3 6.4E-06 52.1 4.1 28 173-200 3-30 (290)
496 COG0529 CysC Adenylylsulfate k 90.3 0.52 1.1E-05 45.7 5.2 32 171-202 19-50 (197)
497 PRK13768 GTPase; Provisional 90.2 0.44 9.5E-06 51.3 5.4 26 176-201 3-28 (253)
498 PRK07721 fliI flagellum-specif 90.2 0.53 1.2E-05 54.4 6.4 28 173-200 156-183 (438)
499 PRK04192 V-type ATP synthase s 90.2 1.1 2.3E-05 53.1 8.8 59 166-228 217-277 (586)
500 PRK06761 hypothetical protein; 90.1 0.35 7.5E-06 52.2 4.5 34 176-210 4-37 (282)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3e-83 Score=777.46 Aligned_cols=583 Identities=28% Similarity=0.435 Sum_probs=463.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHhhccchHHhhc-----------------ccc
Q 040332 37 QNLKTEVESLKSERVSTQHLVDEAKRKGEEIEENVENWLASANNVIVEADKFTDDEATAN-----------------KRC 99 (1210)
Q Consensus 37 ~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~Wl~~~~~~~~~~ed~~d~~~~~~-----------------~~~ 99 (1210)
.+.++.+..|++.+..++.++++|+++. .....+..|...+++++|++||+++.+.... .-|
T Consensus 24 ~~~~~~i~~Lk~~L~~l~~~l~d~~a~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c 102 (889)
T KOG4658|consen 24 DGKDNYILELKENLKALQSALEDLDAKR-DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLC 102 (889)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHh
Confidence 5667788999999999999999999884 3467889999999999999999988654211 112
Q ss_pred ccccc-CChhhhhhhhHHHHHHHHHHHHHHHcCCCCcccc-ccCCcccccccccCcccccccHHHHHHHHHHhCCCCceE
Q 040332 100 FKGFC-PNLNTRRGLNKEVERQKKAIVKVREAGRFDRISY-RTAPEDIRLISSKDYEAFESRMPTLRSILSALEDPDVNM 177 (1210)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~v 177 (1210)
+.+.+ ......+.+++++.++...++.+...+.|..+.. ..+....++.|...... ||.+..++++++.|.+.+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~i 181 (889)
T KOG4658|consen 103 LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGI 181 (889)
T ss_pred hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCE
Confidence 22222 2334445666777777777777655555554432 11222333444444444 899999999999999887799
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh-ccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCccc--c---------cCc
Q 040332 178 LGIYGMGGIGKTMLAEEVARKIK-SDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPG--R---------EEK 245 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~--~---------~~k 245 (1210)
++|+||||+||||||++++|+.. ++.+||.++||+||+.++...++.+|+..++.......... . ++|
T Consensus 182 v~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~k 261 (889)
T KOG4658|consen 182 VGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGK 261 (889)
T ss_pred EEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccC
Confidence 99999999999999999999998 99999999999999999999999999999887443333221 1 899
Q ss_pred cEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCC--CCCchH
Q 040332 246 KILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDY--IEGSEF 323 (1210)
Q Consensus 246 r~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~ 323 (1210)
||+|||||||+..+|+.++.|+|...+||||++|||++.|+...+++...+++++|+.+|||.||++.||.. ...+.+
T Consensus 262 rfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i 341 (889)
T KOG4658|consen 262 RFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDI 341 (889)
T ss_pred ceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccH
Confidence 999999999999999999999999999999999999999988778888999999999999999999999843 344569
Q ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCCccccchhHHHHHHhhhcCCCccchhhhHhhhc
Q 040332 324 QLVAREVEKECAGLPVSIVTVARALRNNKSLFDWKDALEQLRRPPLKNFMNIQPNAHKAIKLSYDNLGGEELKNVFLLIG 403 (1210)
Q Consensus 324 ~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s 403 (1210)
+++|++|+++|+|+|||++++|+.|+.+++..+|+.+.+.+.+....++++..+.+++++++||++||+ ++|.||+|||
T Consensus 342 ~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLyca 420 (889)
T KOG4658|consen 342 EELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCA 420 (889)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhc
Confidence 999999999999999999999999999999999999999998876666666678999999999999994 7999999999
Q ss_pred cCc---cccHHHHHHHHhhcCcCCCCCcHHHHHHHHHHHHHHHHhhcceeeccc-CCCCeEEhhHHHHHHHHHHHc----
Q 040332 404 YTV---IESIDDLLMYGMGLGLFQGVSKMEEARARVHTLVHKLKASCMLLDHLS-KNEEFFSMHDVVRDVAISIAS---- 475 (1210)
Q Consensus 404 ~fp---~~~~~~Li~~w~a~g~~~~~~~~e~~~~~~~~~~~~L~~~~ll~~~~~-~~~~~~~mHdlv~~~~~~~~~---- 475 (1210)
+|| .|+++.|+.+|+||||+.+....+.+++.+.+|+.+|++++|+..... .+..+|+|||+|||+|.++++
T Consensus 421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~ 500 (889)
T KOG4658|consen 421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGK 500 (889)
T ss_pred cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccc
Confidence 999 789999999999999998876677788888899999999999987643 234689999999999999999
Q ss_pred -cCCceeeccccccccccCCCccccccceeEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceE
Q 040332 476 -SEHNVFSATEEQVDGCREWSEESAVKLYTSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRV 554 (1210)
Q Consensus 476 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~ 554 (1210)
+++.++.... +....+....+..+|+++++++.+..++....+++|++|.+..+.. ....++..||..++.|||
T Consensus 501 ~~e~~iv~~~~----~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrV 575 (889)
T KOG4658|consen 501 QEENQIVSDGV----GLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRV 575 (889)
T ss_pred cccceEEECCc----CccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch-hhhhcCHHHHhhCcceEE
Confidence 6664333321 1233455556678999999999999999888999999995554432 356788889999999999
Q ss_pred EEecCc-ccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCC-CcccCcccCCCCCCCEEecCC
Q 040332 555 INLSYV-DLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCD-IRQLPIEVGELICLKLLDLRD 627 (1210)
Q Consensus 555 L~l~~~-~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~ 627 (1210)
|||++| .+.+||++|+.|.|||||+++++.+.. |.++++|++|++|++..+. +..+|..+..|.+||+|.+..
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 999976 456889988888888888877776555 5555555555555555442 222222233344555554433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.6e-62 Score=628.11 Aligned_cols=669 Identities=21% Similarity=0.281 Sum_probs=438.2
Q ss_pred cCcccccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe---cCCc--------
Q 040332 151 KDYEAFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEV---SQSQ-------- 217 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~-------- 217 (1210)
.+..++|||++.++++..++. .+++++|+||||||+||||||+++|++... +|++.+|+.. +...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccc
Confidence 356779999999999998885 567899999999999999999999998764 5999888742 1110
Q ss_pred ---C-HHHHHHHHHHHhCCCcccCC---c--ccc-cCccEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhh
Q 040332 218 ---D-IRKIQGEIADKLGLKFHEES---E--PGR-EEKKILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDVLS 287 (1210)
Q Consensus 218 ---~-~~~~~~~i~~~l~~~~~~~~---~--~~~-~~kr~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~~ 287 (1210)
. ...++++++.++-....... . ..+ ++||+||||||||+..+|+.+.....+.++||+||||||++.++.
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~ 338 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLR 338 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHH
Confidence 1 12234444444321111000 0 011 799999999999999999999877667788999999999999975
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHHHHHHHHhcC
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYI-EGSEFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDWKDALEQLRR 366 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 366 (1210)
. .+..++|+++.++.++||+||+++||... +++++.+++++|+++|+|+|||++++|++|+ .++..+|+.++++++.
T Consensus 339 ~-~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~-~k~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 339 A-HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLR-GRDKEDWMDMLPRLRN 416 (1153)
T ss_pred h-cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHh
Confidence 4 55678999999999999999999998543 4456889999999999999999999999999 5688999999999875
Q ss_pred CCCCCccccchhHHHHHHhhhcCCCccchhhhHhhhccCc-cccHHHHHHHHhhcCcCCCCCcHHHHHHHHHHHHHHHHh
Q 040332 367 PPLKNFMNIQPNAHKAIKLSYDNLGGEELKNVFLLIGYTV-IESIDDLLMYGMGLGLFQGVSKMEEARARVHTLVHKLKA 445 (1210)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp-~~~~~~Li~~w~a~g~~~~~~~~e~~~~~~~~~~~~L~~ 445 (1210)
.. ..++.++|++||++|++++.|.||+++|+|| +...+ .+..|.+.+.+.. ...++.|++
T Consensus 417 ~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~-~v~~~l~~~~~~~-----------~~~l~~L~~ 477 (1153)
T PLN03210 417 GL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN-DIKLLLANSDLDV-----------NIGLKNLVD 477 (1153)
T ss_pred Cc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH-HHHHHHHhcCCCc-----------hhChHHHHh
Confidence 32 4578999999999998755799999999998 55554 4666777654321 113788999
Q ss_pred hcceeecccCCCCeEEhhHHHHHHHHHHHccCCceeeccccccccccCCC---------ccccccceeEEEecccccccC
Q 040332 446 SCMLLDHLSKNEEFFSMHDVVRDVAISIASSEHNVFSATEEQVDGCREWS---------EESAVKLYTSIVLRDVKTNLL 516 (1210)
Q Consensus 446 ~~ll~~~~~~~~~~~~mHdlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~l~~~~~~~l 516 (1210)
+||++... +.++|||++|++|+.++.++.. .... +...|. .....+.++++++....+..
T Consensus 478 ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~-~~~~-----r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~- 546 (1153)
T PLN03210 478 KSLIHVRE----DIVEMHSLLQEMGKEIVRAQSN-EPGE-----REFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE- 546 (1153)
T ss_pred cCCEEEcC----CeEEhhhHHHHHHHHHHHhhcC-CCCc-----ceeEeCHHHHHHHHHhCcccceeeEEEeccCccce-
Confidence 99997642 5799999999999999877641 0000 011111 12233456666665443322
Q ss_pred CCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCccc-------ccCCccccCCC-CCcEEEecCccCCC-
Q 040332 517 PELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDL-------LSLPSSLVLLS-NLRTLSLYYCKLLD- 587 (1210)
Q Consensus 517 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-------~~lp~~i~~l~-~L~~L~L~~~~~~~- 587 (1210)
..+..+.|.+|+.|++|.+..+.. ..+|..+..++ +|++|.+.++.+..
T Consensus 547 ----------------------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l 604 (1153)
T PLN03210 547 ----------------------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM 604 (1153)
T ss_pred ----------------------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC
Confidence 123444566666666666644321 13455555543 36666666666655
Q ss_pred CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCc
Q 040332 588 ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKN 667 (1210)
Q Consensus 588 ~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~ 667 (1210)
|..+ .+.+|+.|+++++.+..+|.++..+++|+.|++++|..++.+|. ++.+++|++|++.+|... ...+
T Consensus 605 P~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-------~~lp 674 (1153)
T PLN03210 605 PSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-------VELP 674 (1153)
T ss_pred CCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-------cccc
Confidence 4444 45666666666666666666666666666666666655666664 466666666666665431 2345
Q ss_pred cccccCCCCCEEEeecc-CCCCCCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEee
Q 040332 668 ASLNELKHLTSLQLRIK-DINCLPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGL 746 (1210)
Q Consensus 668 ~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l 746 (1210)
..++.+++|+.|+++++ .+..+|.... +++|+.|.+
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~Lp~~i~-------------------------------------------l~sL~~L~L 711 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEILPTGIN-------------------------------------------LKSLYRLNL 711 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCccCCcCC-------------------------------------------CCCCCEEeC
Confidence 55666666666666643 2333333211 234444555
Q ss_pred cccccccchhhhhhhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEE
Q 040332 747 YGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLT 826 (1210)
Q Consensus 747 ~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 826 (1210)
++| .....++. ..++|++|+++++. +..++... . +++|++|.
T Consensus 712 sgc--~~L~~~p~-----~~~nL~~L~L~~n~-i~~lP~~~-~-----------------------------l~~L~~L~ 753 (1153)
T PLN03210 712 SGC--SRLKSFPD-----ISTNISWLDLDETA-IEEFPSNL-R-----------------------------LENLDELI 753 (1153)
T ss_pred CCC--CCcccccc-----ccCCcCeeecCCCc-cccccccc-c-----------------------------cccccccc
Confidence 544 22222211 13566666666653 22222111 1 13334444
Q ss_pred eecCCCc------cccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCCc
Q 040332 827 VCNCRNL------GCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDV 900 (1210)
Q Consensus 827 l~~c~~l------~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~ 900 (1210)
+.+|... ..+++. .....++|+.|++++|+.+.++ +..++.+++|+.|++++|++++.+|...
T Consensus 754 l~~~~~~~l~~~~~~l~~~-~~~~~~sL~~L~Ls~n~~l~~l---------P~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPL-MTMLSPSLTRLFLSDIPSLVEL---------PSSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred ccccchhhccccccccchh-hhhccccchheeCCCCCCcccc---------ChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 4332211 111111 1123467888888888777666 3346678888888888888888887653
Q ss_pred ccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeecccccccccc-ccccccceEeee-cccccccCCcc
Q 040332 901 NIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINK-CQLFREDLLCKL-KCLDVEFGDER 978 (1210)
Q Consensus 901 ~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~-~~~l~~L~~L~l-~c~~l~~~~~~ 978 (1210)
.+++|+.|++++|..+..+| ..+++|+.|+++++.+...+. ...+++|+.|++ +|++++..
T Consensus 823 ---~L~sL~~L~Ls~c~~L~~~p-----------~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l--- 885 (1153)
T PLN03210 823 ---NLESLESLDLSGCSRLRTFP-----------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV--- 885 (1153)
T ss_pred ---CccccCEEECCCCCcccccc-----------ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc---
Confidence 47888888888888887652 235678888888887665442 236677777777 77777522
Q ss_pred ccccchhHHHHHhcccceEEEE
Q 040332 979 TSILSLDDFLQRFHAMKVLKIV 1000 (1210)
Q Consensus 979 ~~~~~~~~~~~~l~~L~~L~i~ 1000 (1210)
+..+..+++|+.|+++
T Consensus 886 ------~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 886 ------SLNISKLKHLETVDFS 901 (1153)
T ss_pred ------CcccccccCCCeeecC
Confidence 2234456677777776
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-40 Score=370.78 Aligned_cols=265 Identities=29% Similarity=0.473 Sum_probs=212.5
Q ss_pred cHHHHHHHHHHhCC--CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCccc
Q 040332 159 RMPTLRSILSALED--PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHE 236 (1210)
Q Consensus 159 r~~~~~~l~~~l~~--~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 236 (1210)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+.++|+.++...+...++..|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 7899999999999999999999999977778899999999999999999999999999887443
Q ss_pred C---Ccccc---------cCccEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhhhcCCCcceeeecCCCHH
Q 040332 237 E---SEPGR---------EEKKILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDVLSRKMDSQQNFAVGILKEV 304 (1210)
Q Consensus 237 ~---~~~~~---------~~kr~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~ 304 (1210)
. ..... .++++||||||||+...|+.+...++....|++||||||+..++.........|++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 11111 78899999999999999999988888888899999999999987543333678999999999
Q ss_pred HHHHHHHHHhCCCC--CCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCCccccchhHHHH
Q 040332 305 EAWSLFKKMAGDYI--EGSEFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDWKDALEQLRRPPLKNFMNIQPNAHKA 382 (1210)
Q Consensus 305 ~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~ 382 (1210)
||++||.+.++... ..+...+.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+...... ..+....+..+
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~~ 239 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 99999999998543 4455677899999999999999999999997656889999999887654422 11236789999
Q ss_pred HHhhhcCCCccchhhhHhhhccCc---cccHHHHHHHHhhcCcCCC
Q 040332 383 IKLSYDNLGGEELKNVFLLIGYTV---IESIDDLLMYGMGLGLFQG 425 (1210)
Q Consensus 383 l~~sy~~L~~~~lk~cfl~~s~fp---~~~~~~Li~~w~a~g~~~~ 425 (1210)
+.+||+.||+ ++|.||+|||+|| .|+.+.|+++|+++||+..
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999998 6999999999999 6889999999999999865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-32 Score=355.81 Aligned_cols=512 Identities=18% Similarity=0.171 Sum_probs=274.1
Q ss_pred cceeEEEecccccccC-C-CcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccc-cCCccccCCCCCcE
Q 040332 501 KLYTSIVLRDVKTNLL-P-ELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLL-SLPSSLVLLSNLRT 577 (1210)
Q Consensus 501 ~~~~~l~l~~~~~~~l-~-~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~ 577 (1210)
.+++.+.+.++.+... + .+..+++|+.|.+..+... ..+|..+|..+++||+|++++|.+. .+|. +.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 3577888877765332 2 3556677777755443322 2456666667777777777777765 3443 45677777
Q ss_pred EEecCccCCC--CCCCCCCCCCcEEEeecCCCc-ccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCC
Q 040332 578 LSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIR-QLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNS 654 (1210)
Q Consensus 578 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~ 654 (1210)
|++++|.+.. |..++++.+|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc
Confidence 7777777764 566777777777777777654 56777777777777777777444455655 4777777777777765
Q ss_pred CccccccccccCccccccCCCCCEEEeeccCCCC-CCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHH
Q 040332 655 FYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC-LPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDV 733 (1210)
Q Consensus 655 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 733 (1210)
+ .+..+..++++++|+.|++++|.+.. +|.
T Consensus 224 l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------------------------------------ 254 (968)
T PLN00113 224 L-------SGEIPYEIGGLTSLNHLDLVYNNLTGPIPS------------------------------------------ 254 (968)
T ss_pred c-------CCcCChhHhcCCCCCEEECcCceeccccCh------------------------------------------
Confidence 5 34556667777777777777665542 221
Q ss_pred HHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhccc
Q 040332 734 LIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINIS 813 (1210)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~ 813 (1210)
.+..+++|+.|.++++ .-...++..+. .+++|++|++++|.....++..
T Consensus 255 ~l~~l~~L~~L~L~~n--~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~--------------------------- 303 (968)
T PLN00113 255 SLGNLKNLQYLFLYQN--KLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPEL--------------------------- 303 (968)
T ss_pred hHhCCCCCCEEECcCC--eeeccCchhHh--hccCcCEEECcCCeeccCCChh---------------------------
Confidence 1223566777777764 21122233332 3678888888877544333322
Q ss_pred ccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccc
Q 040332 814 NILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLT 893 (1210)
Q Consensus 814 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 893 (1210)
+..+++|+.|++++|.....++. .+..+++|+.|++++|.....+ +..+..+++|+.|+++++.-..
T Consensus 304 --~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~---------p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 304 --VIQLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSGEI---------PKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred --HcCCCCCcEEECCCCccCCcCCh--hHhcCCCCCEEECcCCCCcCcC---------ChHHhCCCCCcEEECCCCeeEe
Confidence 23345566666655544333221 2355666666666655522222 2233445666666666543222
Q ss_pred cccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeecccccccccc--ccccccceEeeecccc
Q 040332 894 SFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINK--CQLFREDLLCKLKCLD 971 (1210)
Q Consensus 894 ~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~--~~~l~~L~~L~l~c~~ 971 (1210)
.++.. +..+++|+.|++++|+-....| .....+++|+.|++++|.+....+ ...+++|+.|+++.|.
T Consensus 371 ~~p~~---~~~~~~L~~L~l~~n~l~~~~p--------~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 371 EIPEG---LCSSGNLFKLILFSNSLEGEIP--------KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred eCChh---HhCcCCCCEEECcCCEecccCC--------HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 33222 2334556666666553222221 122335566666666665543332 2255566666665555
Q ss_pred cccCCccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhhhccccCccccccccccCcCcccEEEEecc
Q 040332 972 VEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILKQESSNMNNLVILHVIRC 1051 (1210)
Q Consensus 972 l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c 1051 (1210)
++. ..+..+..+++|+.|+++ +|.+... ++ . .....+|+.|++++|
T Consensus 440 l~~--------~~~~~~~~l~~L~~L~L~-~n~~~~~-----------------------~p-~-~~~~~~L~~L~ls~n 485 (968)
T PLN00113 440 LQG--------RINSRKWDMPSLQMLSLA-RNKFFGG-----------------------LP-D-SFGSKRLENLDLSRN 485 (968)
T ss_pred ccC--------ccChhhccCCCCcEEECc-Cceeeee-----------------------cC-c-ccccccceEEECcCC
Confidence 531 122233456666666666 3332111 10 1 112245555555555
Q ss_pred ccccccCCCCccccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhccccccccccccccccccccc
Q 040332 1052 NNLINLVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELC 1131 (1210)
Q Consensus 1052 ~~L~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~ 1131 (1210)
.....++..+..+++|+.|++++| ++....|.. +.++++|+.|+|++|.....+| .....+++|+.|+++
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIP--------ASFSEMPVLSQLDLS 555 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCC-cceeeCChH-HcCccCCCEEECCCCcccccCC--------hhHhCcccCCEEECC
Confidence 444444444445555555555555 333332322 3455555555555554332332 123445555555555
Q ss_pred ccccccccccCCccccCCcccEEeeccCCCccccCC
Q 040332 1132 ELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSG 1167 (1210)
Q Consensus 1132 ~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~ 1167 (1210)
+|.-...+|..... +++|+.|++++|+-...+|.
T Consensus 556 ~N~l~~~~p~~l~~--l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 556 QNQLSGEIPKNLGN--VESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCcccccCChhHhc--CcccCEEeccCCcceeeCCC
Confidence 55544445443332 25555555555555555554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.6e-31 Score=348.80 Aligned_cols=510 Identities=19% Similarity=0.193 Sum_probs=378.3
Q ss_pred CchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccc-cCCcccc-CCCCCcEEEecCccCCCCCCCCCCCCCcEE
Q 040332 523 PQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLL-SLPSSLV-LLSNLRTLSLYYCKLLDISGIGDLKKLEFL 600 (1210)
Q Consensus 523 ~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~-~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L 600 (1210)
.+++.|++..+...+ .....|..+++|++|++++|.+. .+|..+. .+.+|++|+|++|.+......+.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~---~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISG---KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccc---cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEE
Confidence 356667555443322 22456789999999999999987 7888765 899999999999999873334679999999
Q ss_pred EeecCCCc-ccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEE
Q 040332 601 CLRGCDIR-QLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSL 679 (1210)
Q Consensus 601 ~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L 679 (1210)
++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+ .+..+..++++++|+.|
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l-------~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQL-------VGQIPRELGQMKSLKWI 217 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCC-------cCcCChHHcCcCCccEE
Confidence 99999887 67889999999999999999555677776 59999999999999876 35677889999999999
Q ss_pred EeeccCCCC-CCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhh
Q 040332 680 QLRIKDINC-LPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFA 758 (1210)
Q Consensus 680 ~l~~~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 758 (1210)
++++|.+.. +|.. +..+++|+.|+++++ .-...++
T Consensus 218 ~L~~n~l~~~~p~~------------------------------------------l~~l~~L~~L~L~~n--~l~~~~p 253 (968)
T PLN00113 218 YLGYNNLSGEIPYE------------------------------------------IGGLTSLNHLDLVYN--NLTGPIP 253 (968)
T ss_pred ECcCCccCCcCChh------------------------------------------HhcCCCCCEEECcCc--eeccccC
Confidence 999887652 3321 123567788888775 2222333
Q ss_pred hhhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCcccccc
Q 040332 759 NELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFS 838 (1210)
Q Consensus 759 ~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 838 (1210)
..+. .+++|++|++++|.....+ +..+..+++|++|++++|.....+|.
T Consensus 254 ~~l~--~l~~L~~L~L~~n~l~~~~-----------------------------p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 254 SSLG--NLKNLQYLFLYQNKLSGPI-----------------------------PPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred hhHh--CCCCCCEEECcCCeeeccC-----------------------------chhHhhccCcCEEECcCCeeccCCCh
Confidence 3333 3678888888887543221 12334557899999998865544432
Q ss_pred chhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCC
Q 040332 839 SSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPK 918 (1210)
Q Consensus 839 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~ 918 (1210)
.+..+++|+.|++.+|.....+ +..+..+|+|+.|+++++.-...++.. +..+++|+.|++++|.-
T Consensus 303 --~~~~l~~L~~L~l~~n~~~~~~---------~~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 303 --LVIQLQNLEILHLFSNNFTGKI---------PVALTSLPRLQVLQLWSNKFSGEIPKN---LGKHNNLTVLDLSTNNL 368 (968)
T ss_pred --hHcCCCCCcEEECCCCccCCcC---------ChhHhcCCCCCEEECcCCCCcCcCChH---HhCCCCCcEEECCCCee
Confidence 3578999999999988743333 345667999999999997554455543 45689999999998843
Q ss_pred cccccccccccccccccccCCcceeeeccccccccccc--cccccceEeeecccccccCCccccccchhHHHHHhcccce
Q 040332 919 FMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINKC--QLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKV 996 (1210)
Q Consensus 919 L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~~--~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~ 996 (1210)
-...| .....+++|+.|++++|.+....+. ..+++|+.|+++.|+++ ...+..+..+++|+.
T Consensus 369 ~~~~p--------~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~--------~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 369 TGEIP--------EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS--------GELPSEFTKLPLVYF 432 (968)
T ss_pred EeeCC--------hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee--------eECChhHhcCCCCCE
Confidence 33332 2234468899999999987655443 37889999999666663 123456788999999
Q ss_pred EEEEccccccceeecccccchhhhhhhccccCccccccccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCC
Q 040332 997 LKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCK 1076 (1210)
Q Consensus 997 L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~ 1076 (1210)
|+++ +| .+....+..+..+++|+.|++++|.....+| .....++|+.|++++|
T Consensus 433 L~Ls-~N------------------------~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~~~L~~L~ls~n- 485 (968)
T PLN00113 433 LDIS-NN------------------------NLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRN- 485 (968)
T ss_pred EECc-CC------------------------cccCccChhhccCCCCcEEECcCceeeeecC-cccccccceEEECcCC-
Confidence 9998 33 3333333445567899999999998776654 4556789999999999
Q ss_pred CcceecchhHHhhhhhceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEee
Q 040332 1077 GLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILV 1156 (1210)
Q Consensus 1077 ~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i 1156 (1210)
++....|. .+..+++|+.|++++|.....+| ..+..+++|+.|+|++|.-...+|..... +++|+.|++
T Consensus 486 ~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~L 554 (968)
T PLN00113 486 QFSGAVPR-KLGSLSELMQLKLSENKLSGEIP--------DELSSCKKLVSLDLSHNQLSGQIPASFSE--MPVLSQLDL 554 (968)
T ss_pred ccCCccCh-hhhhhhccCEEECcCCcceeeCC--------hHHcCccCCCEEECCCCcccccCChhHhC--cccCCEEEC
Confidence 56554344 46789999999999987555555 25678999999999998766566654443 599999999
Q ss_pred ccCCCccccCCCCcCCCceeEEEecccccc
Q 040332 1157 NDCPSMKIFSGGELSTPKLLKVQLDEFNKE 1186 (1210)
Q Consensus 1157 ~~C~~l~~lp~~~~~~~~L~~l~i~~C~~~ 1186 (1210)
++|.-...+|..+..+++|+.+++++|+-.
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCcce
Confidence 999888889999999999999999986533
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=3.9e-24 Score=244.79 Aligned_cols=450 Identities=23% Similarity=0.279 Sum_probs=286.4
Q ss_pred CCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCccc
Q 040332 536 SPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEV 614 (1210)
Q Consensus 536 ~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i 614 (1210)
+.....|-++..+.-+|+.||+++|.+..+|..|+.+.+|+.|+++.|.+.. |.+.+++.+|++|.|.+|.+..+|.++
T Consensus 31 N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~ 110 (1081)
T KOG0618|consen 31 NSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI 110 (1081)
T ss_pred cccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH
Confidence 3344555666777777999999999999999999999999999999999998 888999999999999999999999999
Q ss_pred CCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccc
Q 040332 615 GELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLF 694 (1210)
Q Consensus 615 ~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 694 (1210)
..+++|++|+++.| .+..+|.- +..++.+..+..++|..+ ..++... .+.+++..+.+..
T Consensus 111 ~~lknl~~LdlS~N-~f~~~Pl~-i~~lt~~~~~~~s~N~~~-----------~~lg~~~-ik~~~l~~n~l~~------ 170 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFN-HFGPIPLV-IEVLTAEEELAASNNEKI-----------QRLGQTS-IKKLDLRLNVLGG------ 170 (1081)
T ss_pred Hhhhcccccccchh-ccCCCchh-HHhhhHHHHHhhhcchhh-----------hhhcccc-chhhhhhhhhccc------
Confidence 99999999999998 78888876 488898988888877210 1111111 2222222221110
Q ss_pred cccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCc-EEE
Q 040332 695 FEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLK-HLW 773 (1210)
Q Consensus 695 ~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~-~L~ 773 (1210)
.+..+ ..+|+ .|+
T Consensus 171 -------------------------------------------------------------~~~~~-----i~~l~~~ld 184 (1081)
T KOG0618|consen 171 -------------------------------------------------------------SFLID-----IYNLTHQLD 184 (1081)
T ss_pred -------------------------------------------------------------chhcc-----hhhhheeee
Confidence 00000 01112 244
Q ss_pred eeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEE
Q 040332 774 IEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQI 853 (1210)
Q Consensus 774 l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l 853 (1210)
++++... . .....+++++.+. . ....|..+.+ .-++|+.|+.
T Consensus 185 Lr~N~~~-~--~dls~~~~l~~l~--c-----------------~rn~ls~l~~----------------~g~~l~~L~a 226 (1081)
T KOG0618|consen 185 LRYNEME-V--LDLSNLANLEVLH--C-----------------ERNQLSELEI----------------SGPSLTALYA 226 (1081)
T ss_pred cccchhh-h--hhhhhccchhhhh--h-----------------hhcccceEEe----------------cCcchheeee
Confidence 4443322 0 0001111111111 0 0011111211 1245566666
Q ss_pred eccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCccccccccccccccc
Q 040332 854 WGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEK 933 (1210)
Q Consensus 854 ~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~ 933 (1210)
++|+ +.++.. ...-.+|+++++++ .++..++.. +..+++|+.+.+..+ .|..+|..
T Consensus 227 ~~n~-l~~~~~----------~p~p~nl~~~dis~-n~l~~lp~w---i~~~~nle~l~~n~N-~l~~lp~r-------- 282 (1081)
T KOG0618|consen 227 DHNP-LTTLDV----------HPVPLNLQYLDISH-NNLSNLPEW---IGACANLEALNANHN-RLVALPLR-------- 282 (1081)
T ss_pred ccCc-ceeecc----------ccccccceeeecch-hhhhcchHH---HHhcccceEecccch-hHHhhHHH--------
Confidence 6665 222211 11123556666665 455555532 445666666666554 33333222
Q ss_pred ccccCCcceeeecccccccccccc-ccccceEeeecccccccCCccccccchhHHHHHhcc-cceEEEEccccccceeec
Q 040332 934 GQVFPSLEELSVDVKHIAAINKCQ-LFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHA-MKVLKIVGECYVGESEEK 1011 (1210)
Q Consensus 934 ~~~~~sL~~L~l~~~~~~~~~~~~-~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~-L~~L~i~~~c~~~~~~~~ 1011 (1210)
.....+|+.|.+..|.+.-.++.. .+.+|+.|++.-|+|.. ++...+..+.. |..|..+
T Consensus 283 i~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~--------lp~~~l~v~~~~l~~ln~s----------- 343 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS--------LPDNFLAVLNASLNTLNVS----------- 343 (1081)
T ss_pred HhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc--------cchHHHhhhhHHHHHHhhh-----------
Confidence 222456666666666666555554 36777777776666632 22333333332 5555554
Q ss_pred ccccchhhhhhhccccCccccccccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcceecchhHHhhhh
Q 040332 1012 VENGMEVIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLV 1091 (1210)
Q Consensus 1012 ~~~~~~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~ 1091 (1210)
+..+...+..+=...+.|+.|.+.++.--.+..|.+.++.+|+.|+++++ +|.++ |.+.++++.
T Consensus 344 --------------~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle 407 (1081)
T KOG0618|consen 344 --------------SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSF-PASKLRKLE 407 (1081)
T ss_pred --------------hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccC-CHHHHhchH
Confidence 34444444322334568888988887766667777889999999999998 78887 777889999
Q ss_pred hceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCccccCCC-Cc
Q 040332 1092 RLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSGG-EL 1170 (1210)
Q Consensus 1092 sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~ 1170 (1210)
.|++|.+++ ++|+.+|. ....+++|++|...+ ++|.++|. .. ++++|+.++++ |.+|+...-- ..
T Consensus 408 ~LeeL~LSG-NkL~~Lp~--------tva~~~~L~tL~ahs-N~l~~fPe-~~--~l~qL~~lDlS-~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 408 ELEELNLSG-NKLTTLPD--------TVANLGRLHTLRAHS-NQLLSFPE-LA--QLPQLKVLDLS-CNNLSEVTLPEAL 473 (1081)
T ss_pred HhHHHhccc-chhhhhhH--------HHHhhhhhHHHhhcC-Cceeechh-hh--hcCcceEEecc-cchhhhhhhhhhC
Confidence 999999999 56999983 578899999998755 67888883 33 45999999995 6888664311 22
Q ss_pred CCCceeEEEecc
Q 040332 1171 STPKLLKVQLDE 1182 (1210)
Q Consensus 1171 ~~~~L~~l~i~~ 1182 (1210)
+-|+||+|++++
T Consensus 474 p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 474 PSPNLKYLDLSG 485 (1081)
T ss_pred CCcccceeeccC
Confidence 237999999986
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=7.9e-21 Score=247.20 Aligned_cols=279 Identities=19% Similarity=0.214 Sum_probs=198.4
Q ss_pred ccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccC
Q 040332 818 NEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCT 897 (1210)
Q Consensus 818 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~ 897 (1210)
.+++|+.|++++|..++.+|. ++.+++|+.|++.+|..+.++ +..+..+++|+.|++++|++++.++.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~l---------p~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVEL---------PSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCcccc---------chhhhccCCCCEEeCCCCCCcCccCC
Confidence 446777777777766666654 356777888888877777666 33455677888888888888887776
Q ss_pred CCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeeccccccccccccccccceEeee-cccccccCC
Q 040332 898 GDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINKCQLFREDLLCKL-KCLDVEFGD 976 (1210)
Q Consensus 898 ~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~~~~l~~L~~L~l-~c~~l~~~~ 976 (1210)
.. .+++|+.|.+++|..+..+| ..+++|+.|+++++.+...+....+++|+.|.+ +|.......
T Consensus 700 ~i----~l~sL~~L~Lsgc~~L~~~p-----------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 700 GI----NLKSLYRLNLSGCSRLKSFP-----------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred cC----CCCCCCEEeCCCCCCccccc-----------cccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence 53 37788888888887776652 235678888888887666554446677777777 333211000
Q ss_pred ccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhhhccccCccccccccccCcCcccEEEEeccccccc
Q 040332 977 ERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNLIN 1056 (1210)
Q Consensus 977 ~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~ 1056 (1210)
.. ....+......++|+.|+++ +|+.+..+|.. +..+++|+.|+|++|..++.
T Consensus 765 ~~--~~l~~~~~~~~~sL~~L~Ls------------------------~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 765 RV--QPLTPLMTMLSPSLTRLFLS------------------------DIPSLVELPSS-IQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred cc--cccchhhhhccccchheeCC------------------------CCCCccccChh-hhCCCCCCEEECCCCCCcCe
Confidence 00 00112223345788888888 45556655543 77888999999999999998
Q ss_pred cCCCCccccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhcccccccccccccccccccccccccc
Q 040332 1057 LVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSM 1136 (1210)
Q Consensus 1057 l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 1136 (1210)
+|... .+++|+.|++++|.++..++. ..++|+.|+++++ .++.+|. .+..+++|+.|++.+|++|
T Consensus 818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP~--------si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 818 LPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVPW--------WIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred eCCCC-CccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccChH--------HHhcCCCCCEEECCCCCCc
Confidence 86544 789999999999998887632 2468899999985 5777763 5678999999999999999
Q ss_pred cccccCCccccCCcccEEeeccCCCccccCC
Q 040332 1137 TSFCSGHCAFKFPSLERILVNDCPSMKIFSG 1167 (1210)
Q Consensus 1137 ~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~ 1167 (1210)
+++|..... +++|+.+++++|+++..++-
T Consensus 883 ~~l~~~~~~--L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 883 QRVSLNISK--LKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CccCccccc--ccCCCeeecCCCcccccccC
Confidence 999876544 48999999999999987653
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=9.5e-22 Score=213.31 Aligned_cols=385 Identities=17% Similarity=0.186 Sum_probs=216.3
Q ss_pred ceEEEecCcccccCCcc-ccCC--CCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 552 VRVINLSYVDLLSLPSS-LVLL--SNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 552 Lr~L~l~~~~~~~lp~~-i~~l--~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
-+.||+++..+..+..+ +..+ ..-+.|++++|++.. +..|.++++|+.+++.+|.++.+|...+...+|++|++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 35667777766653111 1111 234568888888877 667888888888888888888888777777778888888
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEEc
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILIG 706 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~ 706 (1210)
+| .+..+..+.++-+..|+.|+++.|.+. .....++..-.+++.|++++|.++.+..
T Consensus 134 ~N-~I~sv~se~L~~l~alrslDLSrN~is-------~i~~~sfp~~~ni~~L~La~N~It~l~~--------------- 190 (873)
T KOG4194|consen 134 HN-LISSVTSEELSALPALRSLDLSRNLIS-------EIPKPSFPAKVNIKKLNLASNRITTLET--------------- 190 (873)
T ss_pred cc-ccccccHHHHHhHhhhhhhhhhhchhh-------cccCCCCCCCCCceEEeecccccccccc---------------
Confidence 87 677776666677777777777766552 1222233333444444444444432221
Q ss_pred ccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccccCC
Q 040332 707 DFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALNS 786 (1210)
Q Consensus 707 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~ 786 (1210)
T Consensus 191 -------------------------------------------------------------------------------- 190 (873)
T KOG4194|consen 191 -------------------------------------------------------------------------------- 190 (873)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccc
Q 040332 787 AESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVD 866 (1210)
Q Consensus 787 ~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 866 (1210)
+.|..+.+|..|.|+.+ .++.+|.. .+.++|+|+.|++..+. ++.+.
T Consensus 191 ---------------------------~~F~~lnsL~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnrN~-irive--- 237 (873)
T KOG4194|consen 191 ---------------------------GHFDSLNSLLTLKLSRN-RITTLPQR-SFKRLPKLESLDLNRNR-IRIVE--- 237 (873)
T ss_pred ---------------------------ccccccchheeeecccC-cccccCHH-Hhhhcchhhhhhccccc-eeeeh---
Confidence 12222233334444432 22333222 23445555555554443 32220
Q ss_pred cccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeec
Q 040332 867 DQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVD 946 (1210)
Q Consensus 867 ~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~ 946 (1210)
...+..+|+|+.|.+.. +++..+..|. +..+..+++|++..+ .+..... +..-.+++|+.|+++
T Consensus 238 -----~ltFqgL~Sl~nlklqr-N~I~kL~DG~--Fy~l~kme~l~L~~N-~l~~vn~-------g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 238 -----GLTFQGLPSLQNLKLQR-NDISKLDDGA--FYGLEKMEHLNLETN-RLQAVNE-------GWLFGLTSLEQLDLS 301 (873)
T ss_pred -----hhhhcCchhhhhhhhhh-cCcccccCcc--eeeecccceeecccc-hhhhhhc-------ccccccchhhhhccc
Confidence 12333455555555554 3444444332 334455555555443 2222211 011225666666666
Q ss_pred ccccccccc--ccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhhhc
Q 040332 947 VKHIAAINK--CQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREAN 1024 (1210)
Q Consensus 947 ~~~~~~~~~--~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~ 1024 (1210)
.|.+..+.. .+..++|++|+++.|.++ .+.++.+..+..|++|.+++
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~--------~l~~~sf~~L~~Le~LnLs~----------------------- 350 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRIT--------RLDEGSFRVLSQLEELNLSH----------------------- 350 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccc--------cCChhHHHHHHHhhhhcccc-----------------------
Confidence 666554432 335667777777666664 24456677777888887773
Q ss_pred cccCccccccccccCcCcccEEEEecccccc---ccCCCCccccCccEEEEccCCCcceecchhHHhhhhhceEEeEccc
Q 040332 1025 KCCDLKHILKQESSNMNNLVILHVIRCNNLI---NLVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSEC 1101 (1210)
Q Consensus 1025 ~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~---~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c 1101 (1210)
+++.++....+..+++|++|+++++.--- +-.....++++|+.|.+.++ +|+++ +.-.+..+++|++|++.++
T Consensus 351 --Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I-~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 351 --NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSI-PKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred --cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeec-chhhhccCcccceecCCCC
Confidence 55666666666777777777776544211 11112346888888888887 78887 4455677888888888875
Q ss_pred ccHHHHHhhcccccccccccccccccccccc
Q 040332 1102 NMITEIVLAVVDDAVDEIIVFSELKDLELCE 1132 (1210)
Q Consensus 1102 ~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 1132 (1210)
. +.++-. ++.... .|++|.+..
T Consensus 427 a-iaSIq~-------nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 427 A-IASIQP-------NAFEPM-ELKELVMNS 448 (873)
T ss_pred c-ceeecc-------cccccc-hhhhhhhcc
Confidence 5 333321 233333 666665544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.9e-23 Score=224.08 Aligned_cols=367 Identities=20% Similarity=0.246 Sum_probs=224.5
Q ss_pred CCcceEEEecCcccc--cCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEec
Q 040332 549 MIQVRVINLSYVDLL--SLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDL 625 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 625 (1210)
++..|-.|+++|.+. .+|.++..++.++.|.|..+.+.. |+.++.|.+|++|.+++|++..+...+..|+.||.+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 455677788888776 678888888888888888888877 77788888888888888888877777888888888888
Q ss_pred CCCCC-CCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEE
Q 040332 626 RDCSK-LEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRIL 704 (1210)
Q Consensus 626 ~~~~~-~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~ 704 (1210)
++|+. -..+|+++ .+|..|.+|++++|.+ ...|..+..-+++-.|++++|++..+|..++
T Consensus 86 R~N~LKnsGiP~di-F~l~dLt~lDLShNqL--------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf---------- 146 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDI-FRLKDLTILDLSHNQL--------REVPTNLEYAKNSIVLNLSYNNIETIPNSLF---------- 146 (1255)
T ss_pred hccccccCCCCchh-cccccceeeecchhhh--------hhcchhhhhhcCcEEEEcccCccccCCchHH----------
Confidence 77632 24477774 7788888888888876 3567777777888888888888887776531
Q ss_pred EcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCccccccc
Q 040332 705 IGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDAL 784 (1210)
Q Consensus 705 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~ 784 (1210)
..+..|-.|++++ +....+++.... +.+|++|.+++++..-
T Consensus 147 -------------------------------inLtDLLfLDLS~---NrLe~LPPQ~RR--L~~LqtL~Ls~NPL~h--- 187 (1255)
T KOG0444|consen 147 -------------------------------INLTDLLFLDLSN---NRLEMLPPQIRR--LSMLQTLKLSNNPLNH--- 187 (1255)
T ss_pred -------------------------------HhhHhHhhhcccc---chhhhcCHHHHH--HhhhhhhhcCCChhhH---
Confidence 1233444455555 455555555543 6778888888875321
Q ss_pred CCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCC-ccccccchhhhhcccccEEEEecccccccee
Q 040332 785 NSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRN-LGCLFSSSIVSSFVRLQHLQIWGCPVLEEII 863 (1210)
Q Consensus 785 ~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~ 863 (1210)
.. ...++.+++|..|++++... +..+|+. +..+.+|..++++.+. +..+
T Consensus 188 -----------fQ---------------LrQLPsmtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dvDlS~N~-Lp~v- 237 (1255)
T KOG0444|consen 188 -----------FQ---------------LRQLPSMTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDVDLSENN-LPIV- 237 (1255)
T ss_pred -----------HH---------------HhcCccchhhhhhhcccccchhhcCCCc--hhhhhhhhhccccccC-CCcc-
Confidence 00 11223345555666665443 2333332 4667777777777554 5544
Q ss_pred ccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCccee
Q 040332 864 VVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEEL 943 (1210)
Q Consensus 864 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L 943 (1210)
+.++..+++|+.|+|++ ++++.+... .....+|+.|+++.+ .|+.+|.. ...++.|+.|
T Consensus 238 --------Pecly~l~~LrrLNLS~-N~iteL~~~---~~~W~~lEtLNlSrN-QLt~LP~a--------vcKL~kL~kL 296 (1255)
T KOG0444|consen 238 --------PECLYKLRNLRRLNLSG-NKITELNMT---EGEWENLETLNLSRN-QLTVLPDA--------VCKLTKLTKL 296 (1255)
T ss_pred --------hHHHhhhhhhheeccCc-Cceeeeecc---HHHHhhhhhhccccc-hhccchHH--------HhhhHHHHHH
Confidence 34556677777777777 566665443 234556666666554 44444322 2224444444
Q ss_pred eeccccccccccccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhhh
Q 040332 944 SVDVKHIAAINKCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREA 1023 (1210)
Q Consensus 944 ~l~~~~~~~~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l 1023 (1210)
++.+| +|+ ....++.++.+..|+.+...
T Consensus 297 y~n~N----------------------kL~-------FeGiPSGIGKL~~Levf~aa----------------------- 324 (1255)
T KOG0444|consen 297 YANNN----------------------KLT-------FEGIPSGIGKLIQLEVFHAA----------------------- 324 (1255)
T ss_pred HhccC----------------------ccc-------ccCCccchhhhhhhHHHHhh-----------------------
Confidence 44444 443 11223445555555555554
Q ss_pred ccccCccccccccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcce
Q 040332 1024 NKCCDLKHILKQESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMK 1080 (1210)
Q Consensus 1024 ~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~ 1080 (1210)
++.-.+.|++++.+..|+.|.++ |+.|..+|..++.++-|+.|++..+|+|..
T Consensus 325 ---nN~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 325 ---NNKLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ---ccccccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccC
Confidence 12222223445555555555553 444555555555666666666666666543
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-21 Score=211.92 Aligned_cols=133 Identities=24% Similarity=0.280 Sum_probs=98.3
Q ss_pred ceEEEecCcccccC-CccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccC-cccCCCCCCCEEecCCC
Q 040332 552 VRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLP-IEVGELICLKLLDLRDC 628 (1210)
Q Consensus 552 Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~ 628 (1210)
-+.||+++|.+..+ +..|.++++|+.+++.+|.++. |...+...+|+.|+|.+|.|.++. .++..++.|+.||++.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 45688888887765 4557788888888888888888 444445566888888888877664 35677788888888887
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCc
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRG 692 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 692 (1210)
.+..+|...+..-.++++|++++|.+ +......|..+.+|..|.++.|.++.+|..
T Consensus 160 -~is~i~~~sfp~~~ni~~L~La~N~I-------t~l~~~~F~~lnsL~tlkLsrNrittLp~r 215 (873)
T KOG4194|consen 160 -LISEIPKPSFPAKVNIKKLNLASNRI-------TTLETGHFDSLNSLLTLKLSRNRITTLPQR 215 (873)
T ss_pred -hhhcccCCCCCCCCCceEEeeccccc-------cccccccccccchheeeecccCcccccCHH
Confidence 77777766666667888888888876 344556777777888888888888777654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=3.3e-23 Score=214.93 Aligned_cols=137 Identities=25% Similarity=0.371 Sum_probs=87.1
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEe
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLD 624 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 624 (1210)
...+..|.||++++|...++|.+|+.+..++.|+.++|++.. |+.++.+.+|..|+.++|.+.++|++|+.+..|..|+
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 455666667777777666677677766666677777666666 6666666667777776666666666676666666666
Q ss_pred cCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCc
Q 040332 625 LRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRG 692 (1210)
Q Consensus 625 l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 692 (1210)
..+| .+..+|+++ +++.+|..+++.+|.. .+.+...-.++.|+.|+...|....+|.+
T Consensus 144 ~~~N-~i~slp~~~-~~~~~l~~l~~~~n~l--------~~l~~~~i~m~~L~~ld~~~N~L~tlP~~ 201 (565)
T KOG0472|consen 144 ATNN-QISSLPEDM-VNLSKLSKLDLEGNKL--------KALPENHIAMKRLKHLDCNSNLLETLPPE 201 (565)
T ss_pred cccc-ccccCchHH-HHHHHHHHhhccccch--------hhCCHHHHHHHHHHhcccchhhhhcCChh
Confidence 6665 566666663 6666666666666654 12333333366666666666655555544
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=2.8e-23 Score=215.46 Aligned_cols=198 Identities=24% Similarity=0.278 Sum_probs=99.5
Q ss_pred hcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEec
Q 040332 547 ERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDL 625 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 625 (1210)
+.+..+..|+.++|.+..+|+.++.+..|+.|+.++|.+.. +++|+.+..|..|+..+|++..+|.+++++.+|..|++
T Consensus 88 g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 88 GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhc
Confidence 44444455555555555555555555555555555555555 55555555555555555555555555555555555555
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEE
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILI 705 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~ 705 (1210)
.+| .+..+|+..+. ++.|++|+...|-+ +..|..++.+.+|..|++..|.+..+|.--+.+.|.++
T Consensus 168 ~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L--------~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~El---- 233 (565)
T KOG0472|consen 168 EGN-KLKALPENHIA-MKRLKHLDCNSNLL--------ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKEL---- 233 (565)
T ss_pred ccc-chhhCCHHHHH-HHHHHhcccchhhh--------hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHH----
Confidence 554 44555554422 55555555444433 34455555555555555555555555432222222222
Q ss_pred cccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCc
Q 040332 706 GDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCH 778 (1210)
Q Consensus 706 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 778 (1210)
.++.+....++..+...+.++..|++.. +..++++.++.. +.+|++|+++++.
T Consensus 234 ---------------h~g~N~i~~lpae~~~~L~~l~vLDLRd---Nklke~Pde~cl--LrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 234 ---------------HVGENQIEMLPAEHLKHLNSLLVLDLRD---NKLKEVPDEICL--LRSLERLDLSNND 286 (565)
T ss_pred ---------------HhcccHHHhhHHHHhcccccceeeeccc---cccccCchHHHH--hhhhhhhcccCCc
Confidence 1122222223333333344455555554 566666666554 5667777777643
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=6.5e-22 Score=226.80 Aligned_cols=422 Identities=20% Similarity=0.210 Sum_probs=230.5
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEe
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLD 624 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 624 (1210)
+..+.+|+.|.++.|.|.++|.++.++.+|++|.|.+|.+.. |.++..+++|++|++++|.+..+|.-+..++.+..+.
T Consensus 64 it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~ 143 (1081)
T KOG0618|consen 64 ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELA 143 (1081)
T ss_pred hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHh
Confidence 467889999999999999999999999999999999999888 8999999999999999999999999999999999999
Q ss_pred cCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEE
Q 040332 625 LRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRIL 704 (1210)
Q Consensus 625 l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~ 704 (1210)
.++|..+..++. .. .+.+++..|.+ .+.....+..+++ .|+++.|.+. ...-..+.+|+.+...
T Consensus 144 ~s~N~~~~~lg~-----~~-ik~~~l~~n~l-------~~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~ 207 (1081)
T KOG0618|consen 144 ASNNEKIQRLGQ-----TS-IKKLDLRLNVL-------GGSFLIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCE 207 (1081)
T ss_pred hhcchhhhhhcc-----cc-chhhhhhhhhc-------ccchhcchhhhhe--eeecccchhh-hhhhhhccchhhhhhh
Confidence 998844444443 22 66666666544 3445556666666 6888877766 2111122222222111
Q ss_pred EcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCccccccc
Q 040332 705 IGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDAL 784 (1210)
Q Consensus 705 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~ 784 (1210)
...|.++.+.+ ++|+.|..+.|+.....+
T Consensus 208 ---------------------------------rn~ls~l~~~g------------------~~l~~L~a~~n~l~~~~~ 236 (1081)
T KOG0618|consen 208 ---------------------------------RNQLSELEISG------------------PSLTALYADHNPLTTLDV 236 (1081)
T ss_pred ---------------------------------hcccceEEecC------------------cchheeeeccCcceeecc
Confidence 11222222222 344444444443321100
Q ss_pred CCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceec
Q 040332 785 NSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIV 864 (1210)
Q Consensus 785 ~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 864 (1210)
.. ...+++.+. ++. .++. .++.|...+.+|+.|...... +..++. -+...++|+.|.+..|. ++.++
T Consensus 237 ~p--~p~nl~~~d--is~-n~l~---~lp~wi~~~~nle~l~~n~N~-l~~lp~--ri~~~~~L~~l~~~~ne-l~yip- 303 (1081)
T KOG0618|consen 237 HP--VPLNLQYLD--ISH-NNLS---NLPEWIGACANLEALNANHNR-LVALPL--RISRITSLVSLSAAYNE-LEYIP- 303 (1081)
T ss_pred cc--ccccceeee--cch-hhhh---cchHHHHhcccceEecccchh-HHhhHH--HHhhhhhHHHHHhhhhh-hhhCC-
Confidence 00 000000000 000 0000 001222233444444443322 222211 12234445555555444 44442
Q ss_pred cccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceee
Q 040332 865 VDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELS 944 (1210)
Q Consensus 865 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~ 944 (1210)
.....+..|++|++.. +++..++.... ...-.+|..|.++.. ++...|. ......+.|+.|+
T Consensus 304 --------~~le~~~sL~tLdL~~-N~L~~lp~~~l-~v~~~~l~~ln~s~n-~l~~lp~-------~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 304 --------PFLEGLKSLRTLDLQS-NNLPSLPDNFL-AVLNASLNTLNVSSN-KLSTLPS-------YEENNHAALQELY 365 (1081)
T ss_pred --------Ccccccceeeeeeehh-ccccccchHHH-hhhhHHHHHHhhhhc-ccccccc-------ccchhhHHHHHHH
Confidence 2233355566666655 45555544210 000112333333322 2222210 1123456777777
Q ss_pred eccccccc--cccccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhh
Q 040332 945 VDVKHIAA--INKCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIRE 1022 (1210)
Q Consensus 945 l~~~~~~~--~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~ 1022 (1210)
+.+|.+.. .+.+..+..|+.|+++.|.|. .++...+.++..|++|+++|
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--------~fpas~~~kle~LeeL~LSG--------------------- 416 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--------SFPASKLRKLEELEELNLSG--------------------- 416 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccc--------cCCHHHHhchHHhHHHhccc---------------------
Confidence 77777654 234447777777777777773 35556677777777777775
Q ss_pred hccccCccccccccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccc
Q 040332 1023 ANKCCDLKHILKQESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECN 1102 (1210)
Q Consensus 1023 l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~ 1102 (1210)
+.|+.++.. +..+..|++|...++. +..+ |....++.|+.+|++.+ +|+.+....... -++|++|+++++.
T Consensus 417 ----NkL~~Lp~t-va~~~~L~tL~ahsN~-l~~f-Pe~~~l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 417 ----NKLTTLPDT-VANLGRLHTLRAHSNQ-LLSF-PELAQLPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred ----chhhhhhHH-HHhhhhhHHHhhcCCc-eeec-hhhhhcCcceEEecccc-hhhhhhhhhhCC-CcccceeeccCCc
Confidence 556666532 5556666666543322 3333 35666777777777643 555442111111 1467777777655
Q ss_pred c
Q 040332 1103 M 1103 (1210)
Q Consensus 1103 ~ 1103 (1210)
.
T Consensus 488 ~ 488 (1081)
T KOG0618|consen 488 R 488 (1081)
T ss_pred c
Confidence 4
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=3.8e-21 Score=209.52 Aligned_cols=323 Identities=19% Similarity=0.271 Sum_probs=200.7
Q ss_pred cccceeEEEecccccccCC-CcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcE
Q 040332 499 AVKLYTSIVLRDVKTNLLP-ELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRT 577 (1210)
Q Consensus 499 ~~~~~~~l~l~~~~~~~l~-~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 577 (1210)
..+++.|+++..|....+. ++..++.||++++..++... ..+|.++| +++-|.+|||++|.+.+.|..+..-+++-+
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn-sGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN-SGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc-CCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 3456778888877765443 67788888888776655432 34676765 488888888888888888888888888888
Q ss_pred EEecCccCCC-CCC-CCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCC
Q 040332 578 LSLYYCKLLD-ISG-IGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 578 L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
|+|++|+|.. |.. +-+|..|-+|||++|++..+|+.+.+|.+|++|.+++|+ +..+.-..+-.+++|++|.+++...
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccc
Confidence 8888888888 544 668888888888888888888888888888888888873 3322222234567778888875543
Q ss_pred ccccccccccCccccccCCCCCEEEeeccCCCCCCCcc-ccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHH
Q 040332 656 YHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL-FFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVL 734 (1210)
Q Consensus 656 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 734 (1210)
. ....|.++..|.||..++++.|.+..+|..+ .+
T Consensus 210 T------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l--------------------------------------- 244 (1255)
T KOG0444|consen 210 T------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL--------------------------------------- 244 (1255)
T ss_pred h------hhcCCCchhhhhhhhhccccccCCCcchHHHhhh---------------------------------------
Confidence 1 2356778888888888888888777776542 33
Q ss_pred HHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccc
Q 040332 735 IVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISN 814 (1210)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~ 814 (1210)
++|+.|++++. .++++..... .-.+|++|+++.+. +..+|...-.++.
T Consensus 245 ----~~LrrLNLS~N---~iteL~~~~~--~W~~lEtLNlSrNQ-Lt~LP~avcKL~k---------------------- 292 (1255)
T KOG0444|consen 245 ----RNLRRLNLSGN---KITELNMTEG--EWENLETLNLSRNQ-LTVLPDAVCKLTK---------------------- 292 (1255)
T ss_pred ----hhhheeccCcC---ceeeeeccHH--HHhhhhhhccccch-hccchHHHhhhHH----------------------
Confidence 33444444442 2222111000 12566666666643 3333333333333
Q ss_pred cccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCccccc
Q 040332 815 ILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTS 894 (1210)
Q Consensus 815 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 894 (1210)
|+.|...++. +..-...+.++++.+|+.+...++. ++-+ +..+..+++|++|.|.. +.|-.
T Consensus 293 -------L~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aanN~-LElV---------PEglcRC~kL~kL~L~~-NrLiT 353 (1255)
T KOG0444|consen 293 -------LTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAANNK-LELV---------PEGLCRCVKLQKLKLDH-NRLIT 353 (1255)
T ss_pred -------HHHHHhccCc-ccccCCccchhhhhhhHHHHhhccc-cccC---------chhhhhhHHHHHhcccc-cceee
Confidence 3333333221 1111111224666666666666543 4443 33455566666666664 55556
Q ss_pred ccCCCcccccCCCcceeeeecCCCccccc
Q 040332 895 FCTGDVNIIEFPSLKELRISRCPKFMVKY 923 (1210)
Q Consensus 895 ~~~~~~~~~~~~sL~~L~i~~C~~L~~~~ 923 (1210)
+|.. ++.+|.|+.|++.++|+|...|
T Consensus 354 LPea---IHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 354 LPEA---IHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhh---hhhcCCcceeeccCCcCccCCC
Confidence 6655 4556667777777766666544
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=4e-15 Score=137.00 Aligned_cols=166 Identities=25% Similarity=0.403 Sum_probs=136.8
Q ss_pred ccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCC
Q 040332 514 NLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIG 592 (1210)
Q Consensus 514 ~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~ 592 (1210)
..++...++++...|.+..+ ....+|++ +..+++|.+|++.+|.++++|.+|+.++.|+.|++.-|++.. |..||
T Consensus 24 ~~~~gLf~~s~ITrLtLSHN---Kl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHN---KLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhcccccchhhhhhhhcccC---ceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 34555556666666533322 23344544 478899999999999999999999999999999999998888 99999
Q ss_pred CCCCCcEEEeecCCCc--ccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCcccc
Q 040332 593 DLKKLEFLCLRGCDIR--QLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASL 670 (1210)
Q Consensus 593 ~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l 670 (1210)
.++-|++||+.+|++. .+|..+-.++.|+.|.+++| .++-+|+++ ++|++||.|.+..|.+. ..|.++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dv-g~lt~lqil~lrdndll--------~lpkei 169 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDV-GKLTNLQILSLRDNDLL--------SLPKEI 169 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhh-hhhcceeEEeeccCchh--------hCcHHH
Confidence 9999999999999876 68888888999999999998 888899985 99999999999988763 567889
Q ss_pred ccCCCCCEEEeeccCCCCCCCcc
Q 040332 671 NELKHLTSLQLRIKDINCLPRGL 693 (1210)
Q Consensus 671 ~~L~~L~~L~l~~~~~~~~~~~~ 693 (1210)
+.|..|+.|++.+|..+.+|.++
T Consensus 170 g~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHhcccceeeecChhh
Confidence 99999999999999999888763
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=2.4e-12 Score=154.86 Aligned_cols=119 Identities=23% Similarity=0.206 Sum_probs=91.1
Q ss_pred CcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCC
Q 040332 550 IQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCS 629 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 629 (1210)
..-.+|+++++.++.+|..+. .+|+.|++.+|.++..+. .+++|++|++++|+++.+|.. .++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N- 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN- 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCC-
Confidence 346789999999999999876 489999999999988332 357899999999999999864 467889999998
Q ss_pred CCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCC
Q 040332 630 KLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 630 ~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
.+..+|.. ..+|+.|++++|.+. ..+. .+++|+.|++++|.+..+|.
T Consensus 273 ~L~~Lp~l----p~~L~~L~Ls~N~Lt--------~LP~---~p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 273 PLTHLPAL----PSGLCKLWIFGNQLT--------SLPV---LPPGLQELSVSDNQLASLPA 319 (788)
T ss_pred chhhhhhc----hhhcCEEECcCCccc--------cccc---cccccceeECCCCccccCCC
Confidence 67777752 366888899888763 1222 23678888888887776653
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=5.3e-15 Score=154.57 Aligned_cols=389 Identities=19% Similarity=0.198 Sum_probs=214.2
Q ss_pred cccccchhhhcCCcceEEEecCcccccC-CccccCCCCCcEEEecC-ccCCC-CCC-CCCCCCCcEEEeecCCCcccCc-
Q 040332 538 SLSIANNFFERMIQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYY-CKLLD-ISG-IGDLKKLEFLCLRGCDIRQLPI- 612 (1210)
Q Consensus 538 ~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~-~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~- 612 (1210)
...+|+..|+.+++||.|||++|.|+.+ |++|..+..|-.|-+.+ |+|++ |.. |++|..||.|.+.-|++..++.
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 4467888899999999999999999876 88888998888777766 88888 544 8899999999998888887654
Q ss_pred ccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCc-----cccccccccCccccccCCCCCEEEeeccCCC
Q 040332 613 EVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFY-----HWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 613 ~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~-----~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
.+..|++|..|.+.+| .+..++.+.+..+..++++.+..|.+. .|........+..++.........+...++.
T Consensus 159 al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~ 237 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN 237 (498)
T ss_pred HHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc
Confidence 6788999999999888 888888877888899999988877642 1111111112222222222222222222222
Q ss_pred CCCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccc
Q 040332 688 CLPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSS 767 (1210)
Q Consensus 688 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 767 (1210)
.++...+...++.+.- .+. +.+ ....+.+......++
T Consensus 238 q~~a~kf~c~~esl~s---------------------------------------~~~-~~d---~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 238 QEDARKFLCSLESLPS---------------------------------------RLS-SED---FPDSICPAKCFKKLP 274 (498)
T ss_pred ccchhhhhhhHHhHHH---------------------------------------hhc-ccc---CcCCcChHHHHhhcc
Confidence 2222111111111100 000 000 000111111122356
Q ss_pred cCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhccc
Q 040332 768 QLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVR 847 (1210)
Q Consensus 768 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 847 (1210)
+|++|+++++.....-...++....++.|. + .-+.++.+. .+.|..+.+|+.|+++++ .++.+.|. .+..+.+
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~--L-~~N~l~~v~--~~~f~~ls~L~tL~L~~N-~it~~~~~-aF~~~~~ 347 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELY--L-TRNKLEFVS--SGMFQGLSGLKTLSLYDN-QITTVAPG-AFQTLFS 347 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhh--c-CcchHHHHH--HHhhhccccceeeeecCC-eeEEEecc-cccccce
Confidence 666666666443221111122222233332 2 223344444 577788899999999985 45555443 3577788
Q ss_pred ccEEEEecccc--------ccceeccccccccccccccccccceeecccCcccccccCCCc---------ccccCCCcce
Q 040332 848 LQHLQIWGCPV--------LEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDV---------NIIEFPSLKE 910 (1210)
Q Consensus 848 L~~L~l~~~~~--------l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~---------~~~~~~sL~~ 910 (1210)
|.+|.+-.++- +.+|..... ..+...-+.--.++.+.+++...=..-+.+.. -...++.+..
T Consensus 348 l~~l~l~~Np~~CnC~l~wl~~Wlr~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~t 426 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRLAWLGEWLRKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDT 426 (498)
T ss_pred eeeeehccCcccCccchHHHHHHHhhCC-CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhh
Confidence 88888876552 122221111 11122222333566666665322111111100 0112233332
Q ss_pred eeeecCC--CcccccccccccccccccccCCcceeeeccccccccccccccccceEeeecccccccCCccccccchhHHH
Q 040332 911 LRISRCP--KFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINKCQLFREDLLCKLKCLDVEFGDERTSILSLDDFL 988 (1210)
Q Consensus 911 L~i~~C~--~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~ 988 (1210)
+..|. .++.+|+ ..+....+|++.++.+..++.. .+.+| .++++.|.+.... ...|
T Consensus 427 --VvRcSnk~lk~lp~----------~iP~d~telyl~gn~~~~vp~~-~~~~l-~~dls~n~i~~Ls--------n~tf 484 (498)
T KOG4237|consen 427 --VVRCSNKLLKLLPR----------GIPVDVTELYLDGNAITSVPDE-LLRSL-LLDLSNNRISSLS--------NYTF 484 (498)
T ss_pred --hHhhcccchhhcCC----------CCCchhHHHhcccchhcccCHH-HHhhh-hcccccCceehhh--------cccc
Confidence 22232 3444432 2344567888999887766654 66777 7777888774222 3356
Q ss_pred HHhcccceEEEE
Q 040332 989 QRFHAMKVLKIV 1000 (1210)
Q Consensus 989 ~~l~~L~~L~i~ 1000 (1210)
.+++.|.+|-|+
T Consensus 485 ~n~tql~tlils 496 (498)
T KOG4237|consen 485 SNMTQLSTLILS 496 (498)
T ss_pred cchhhhheeEEe
Confidence 678888888776
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=6.7e-12 Score=151.11 Aligned_cols=97 Identities=21% Similarity=0.192 Sum_probs=69.5
Q ss_pred CCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEcc
Q 040332 573 SNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIG 651 (1210)
Q Consensus 573 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~ 651 (1210)
..-..|+++++.++. |+.+. .+|+.|++.+|+++.+|.. +++|++|++++| .+..+|.. ..+|+.|+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l----p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL----PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc----ccccceeecc
Confidence 456788999998888 77665 4789999999998888853 578899999887 77788752 4678888888
Q ss_pred CCCCccccccccccCccccccCCCCCEEEeeccCCCCCC
Q 040332 652 DNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 652 ~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
+|.+.. .+. -..+|+.|++++|.+..+|
T Consensus 271 ~N~L~~--------Lp~---lp~~L~~L~Ls~N~Lt~LP 298 (788)
T PRK15387 271 SNPLTH--------LPA---LPSGLCKLWIFGNQLTSLP 298 (788)
T ss_pred CCchhh--------hhh---chhhcCEEECcCCcccccc
Confidence 776521 111 1245667777777666554
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=5.9e-14 Score=129.39 Aligned_cols=136 Identities=28% Similarity=0.416 Sum_probs=121.4
Q ss_pred cCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 548 RMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 548 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
.+.++..|.|++|.+..+|..|..+.+|++|++.+|++.+ |.+|+.|++|+.|++.-|++..+|.++|.++.|+.|++.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 4667788899999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCCCC-ccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCc
Q 040332 627 DCSKLE-VIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRG 692 (1210)
Q Consensus 627 ~~~~~~-~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 692 (1210)
.|+.-+ .+|.. |..++.|+.|++++|.+ ...|..+++|++|+.|.+..|....+|.+
T Consensus 111 ynnl~e~~lpgn-ff~m~tlralyl~dndf--------e~lp~dvg~lt~lqil~lrdndll~lpke 168 (264)
T KOG0617|consen 111 YNNLNENSLPGN-FFYMTTLRALYLGDNDF--------EILPPDVGKLTNLQILSLRDNDLLSLPKE 168 (264)
T ss_pred ccccccccCCcc-hhHHHHHHHHHhcCCCc--------ccCChhhhhhcceeEEeeccCchhhCcHH
Confidence 885444 35555 57789999999999987 46788999999999999998888887765
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=2.2e-11 Score=147.92 Aligned_cols=122 Identities=17% Similarity=0.271 Sum_probs=90.1
Q ss_pred CcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCC
Q 040332 550 IQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDC 628 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 628 (1210)
.....|+++++.++.+|..+. .+|+.|+|++|.+.. |..+. .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 346788888888888887764 478899999988888 65554 488899999888888887654 47888999888
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCC
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
.+..+|..+ . .+|+.|++++|.+. ..+..+. .+|+.|++++|.+..+|.
T Consensus 252 -~L~~LP~~l-~--s~L~~L~Ls~N~L~--------~LP~~l~--~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 252 -RITELPERL-P--SALQSLDLFHNKIS--------CLPENLP--EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred -ccCcCChhH-h--CCCCEEECcCCccC--------ccccccC--CCCcEEECCCCccccCcc
Confidence 677888764 2 57888888877662 2233332 478888888877766553
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=4.3e-10 Score=146.98 Aligned_cols=287 Identities=13% Similarity=0.165 Sum_probs=177.0
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-cCHHHHHHHHHHHh
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-QDIRKIQGEIADKL 230 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l 230 (1210)
....++-|....+.+-. ....+++.|+|++|.||||++.+..+. ++.++|+++... .+...+...++..+
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 34566677665554432 246789999999999999999998853 336899999644 45566666666655
Q ss_pred CCCccc----C---------Ccccc-----------cCccEEEEEeCCCCcc--ch-hhhcccCCCCCCCeEEEEeeCch
Q 040332 231 GLKFHE----E---------SEPGR-----------EEKKILVILDNIWENL--DL-RVVGIPHGDDHRGCKILLTARSL 283 (1210)
Q Consensus 231 ~~~~~~----~---------~~~~~-----------~~kr~LlvlDdv~~~~--~~-~~~~~~~~~~~~gs~iivTtR~~ 283 (1210)
+..... . ..... .+.+++||+||+...+ .. +.+...+.....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 311111 0 00000 3789999999997642 11 22222222233567898999984
Q ss_pred hhhhh-c-CCCcceeeec----CCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHH
Q 040332 284 DVLSR-K-MDSQQNFAVG----ILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDW 357 (1210)
Q Consensus 284 ~v~~~-~-~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w 357 (1210)
.-... . .......++. +++.+|+.++|....+.... .+...+|.+.++|.|+++..++..++......
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~-- 236 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL-- 236 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--
Confidence 31110 0 0112244555 99999999999887764322 34567899999999999999988776432110
Q ss_pred HHHHHHhcCCCCCCccccchhHHHHHH-hhhcCCCccchhhhHhhhccCccccHHHHHHHHhhcCcCCCCCcHHHHHHHH
Q 040332 358 KDALEQLRRPPLKNFMNIQPNAHKAIK-LSYDNLGGEELKNVFLLIGYTVIESIDDLLMYGMGLGLFQGVSKMEEARARV 436 (1210)
Q Consensus 358 ~~~~~~l~~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~lk~cfl~~s~fp~~~~~~Li~~w~a~g~~~~~~~~e~~~~~~ 436 (1210)
......+... ....+...+. -.++.||+ +.+..++..|+++.+..+-+-... | . +++
T Consensus 237 ~~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~~~~~~l~~~l~---~----~---~~~---- 294 (903)
T PRK04841 237 HDSARRLAGI-------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLRSMNDALIVRVT---G----E---ENG---- 294 (903)
T ss_pred hhhhHhhcCC-------CchhHHHHHHHHHHhcCCH-HHHHHHHHhcccccCCHHHHHHHc---C----C---CcH----
Confidence 1111111100 0123444433 34789998 589999999999977755333221 1 1 111
Q ss_pred HHHHHHHHhhcceeecccCCCCeEEhhHHHHHHHHHHHc
Q 040332 437 HTLVHKLKASCMLLDHLSKNEEFFSMHDVVRDVAISIAS 475 (1210)
Q Consensus 437 ~~~~~~L~~~~ll~~~~~~~~~~~~mHdlv~~~~~~~~~ 475 (1210)
.+.+++|.+++++.....+...+|+.|++++++++....
T Consensus 295 ~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 295 QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 236888888998754323323589999999999988753
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.24 E-value=3.7e-13 Score=142.37 Aligned_cols=310 Identities=20% Similarity=0.235 Sum_probs=169.8
Q ss_pred CCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCC
Q 040332 820 KNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGD 899 (1210)
Q Consensus 820 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 899 (1210)
..|+.|.++||.....-+.-.+....|++++|.+.+|.++++... .......++|++|.+..|+++++..-..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~-------~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL-------LSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH-------HHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 468889999998877665555667889999999999987766532 1122357889999999998888764321
Q ss_pred cccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeecccccccccccc----ccccceEeee-ccccccc
Q 040332 900 VNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINKCQ----LFREDLLCKL-KCLDVEF 974 (1210)
Q Consensus 900 ~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~~~----~l~~L~~L~l-~c~~l~~ 974 (1210)
. ...+|+|++|+++.||.+..- ++.........++.+...+|.......+. ...-+..+++ +|+.++
T Consensus 211 l-a~gC~kL~~lNlSwc~qi~~~------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT- 282 (483)
T KOG4341|consen 211 L-AEGCRKLKYLNLSWCPQISGN------GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT- 282 (483)
T ss_pred H-HHhhhhHHHhhhccCchhhcC------cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-
Confidence 1 345899999999999887762 11112223444666666666432222111 3344555556 676664
Q ss_pred CCccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhhhccccCccccccccc-cCcCcccEEEEecccc
Q 040332 975 GDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILKQES-SNMNNLVILHVIRCNN 1053 (1210)
Q Consensus 975 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~~~l-~~l~~L~~L~l~~c~~ 1053 (1210)
+......-..+..|+.|..+ +|.++.+.....+ ....+|+.|.+..|..
T Consensus 283 ------D~~~~~i~~~c~~lq~l~~s------------------------~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 283 ------DEDLWLIACGCHALQVLCYS------------------------SCTDITDEVLWALGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred ------chHHHHHhhhhhHhhhhccc------------------------CCCCCchHHHHHHhcCCCceEEEeccccch
Confidence 22222333345666666666 3334333322222 2345666666666666
Q ss_pred cccc--CCCCccccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhccccccccccccccccccccc
Q 040332 1054 LINL--VPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELC 1131 (1210)
Q Consensus 1054 L~~l--~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~ 1131 (1210)
+++. .+-..+.+.|+.+++.+|.....-.-.+...+++.|+.|.+++|..++.-.... .+........|..|++.
T Consensus 333 fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~---l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 333 FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH---LSSSSCSLEGLEVLELD 409 (483)
T ss_pred hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh---hhhccccccccceeeec
Confidence 5542 111235666666666666433322122233455666666666666544431100 01122334456666666
Q ss_pred ccccccccccCCccccCCcccEEeeccCCCccccCC--CCcCCCceeEE
Q 040332 1132 ELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSG--GELSTPKLLKV 1178 (1210)
Q Consensus 1132 ~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~--~~~~~~~L~~l 1178 (1210)
+||.+++--..... .|++||.+++.+|..+.+-|. .-..+|+++..
T Consensus 410 n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 410 NCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred CCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 66666554322222 456666666666665544331 12334555444
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=4.9e-11 Score=147.25 Aligned_cols=125 Identities=31% Similarity=0.371 Sum_probs=81.5
Q ss_pred cCCcceEEEecCcccccCCccccCCCCCcEEEecCcc--CCCC--CCCCCCCCCcEEEeecC-CCcccCcccCCCCCCCE
Q 040332 548 RMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCK--LLDI--SGIGDLKKLEFLCLRGC-DIRQLPIEVGELICLKL 622 (1210)
Q Consensus 548 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~--~~~~--~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~ 622 (1210)
.....|...+.++.+..++.+.. ++.|++|-+.++. +... ..|..++.|++||+++| .+.++|..|++|.+||+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 34556777777777776666543 3367777777775 3332 22667777777777776 66777777777777777
Q ss_pred EecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEee
Q 040332 623 LDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLR 682 (1210)
Q Consensus 623 L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 682 (1210)
|+++++ .+..+|.++ ++|+.|.+|++..+... ...+..+..|.+|++|.+.
T Consensus 600 L~L~~t-~I~~LP~~l-~~Lk~L~~Lnl~~~~~l-------~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 600 LDLSDT-GISHLPSGL-GNLKKLIYLNLEVTGRL-------ESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ccccCC-CccccchHH-HHHHhhheecccccccc-------ccccchhhhcccccEEEee
Confidence 777777 677777774 77777777777755431 1123344446666666655
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=9.9e-13 Score=139.22 Aligned_cols=287 Identities=17% Similarity=0.229 Sum_probs=198.9
Q ss_pred CCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCC
Q 040332 820 KNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGD 899 (1210)
Q Consensus 820 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 899 (1210)
+|+++|.+.+|.++++.........+++|++|.+..|.+++...... -...+|+|++|+++.|+.+..=....
T Consensus 164 pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~-------la~gC~kL~~lNlSwc~qi~~~gv~~ 236 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY-------LAEGCRKLKYLNLSWCPQISGNGVQA 236 (483)
T ss_pred CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH-------HHHhhhhHHHhhhccCchhhcCcchH
Confidence 78888899999988876666666778999999999999888764421 12358999999999999888721111
Q ss_pred cccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeecccccccccc----ccccccceEeee-ccccccc
Q 040332 900 VNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINK----CQLFREDLLCKL-KCLDVEF 974 (1210)
Q Consensus 900 ~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~----~~~l~~L~~L~l-~c~~l~~ 974 (1210)
. ...+..++.+...+|..+..- .+.......+-+.++++..|...+-.. .-.+..|+.|.. +|.++.
T Consensus 237 ~-~rG~~~l~~~~~kGC~e~~le------~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~- 308 (483)
T KOG4341|consen 237 L-QRGCKELEKLSLKGCLELELE------ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT- 308 (483)
T ss_pred H-hccchhhhhhhhcccccccHH------HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc-
Confidence 1 223555777777788665442 122233445667777777775333222 125678888888 888874
Q ss_pred CCccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhhhccccCccccccccc-cCcCcccEEEEecccc
Q 040332 975 GDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILKQES-SNMNNLVILHVIRCNN 1053 (1210)
Q Consensus 975 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~~~l-~~l~~L~~L~l~~c~~ 1053 (1210)
+.......++.++|+.|.+. . |.+++...-..+ .++..|+.+++..|..
T Consensus 309 ------d~~l~aLg~~~~~L~~l~l~-~-----------------------c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 309 ------DEVLWALGQHCHNLQVLELS-G-----------------------CQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred ------hHHHHHHhcCCCceEEEecc-c-----------------------cchhhhhhhhhhhcCChhhhhhcccccce
Confidence 44556677789999999999 4 444443322222 3566899999999887
Q ss_pred cccc--CCCCccccCccEEEEccCCCcceecc---hhHHhhhhhceEEeEcccccHHHHHhhcccccccccccccccccc
Q 040332 1054 LINL--VPSSLSFQNLTTLKVSYCKGLMKVLT---SSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDL 1128 (1210)
Q Consensus 1054 L~~l--~~~~~~l~~L~~L~i~~c~~L~~l~~---~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L 1128 (1210)
..+. .....+++.|+.|.+++|..+++... .....++..|+.+.+++||.+++-.. +....++.|+++
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-------e~l~~c~~Leri 431 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-------EHLSICRNLERI 431 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-------HHHhhCccccee
Confidence 7652 23345899999999999977765411 11234566799999999998876643 246788999999
Q ss_pred cccccccccccccCCccccCCcccEEeecc
Q 040332 1129 ELCELKSMTSFCSGHCAFKFPSLERILVND 1158 (1210)
Q Consensus 1129 ~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~ 1158 (1210)
++.+|...++-+.....-++|+++......
T Consensus 432 ~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 432 ELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred eeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 999999998876655555678877766554
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=1.3e-10 Score=141.45 Aligned_cols=95 Identities=22% Similarity=0.356 Sum_probs=42.9
Q ss_pred cceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCC
Q 040332 551 QVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCS 629 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 629 (1210)
+|+.|++++|.+..+|..+. .+|+.|+|++|.+.. |..+. .+|+.|++++|++..+|..+. .+|++|++++|
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N- 293 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN- 293 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-
Confidence 44555555555555444332 245555555554444 33332 245555555555554444332 24555555554
Q ss_pred CCCccChhhhcCCCcccEEEccCCCC
Q 040332 630 KLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 630 ~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
.+..+|..+ ..+|+.|++++|.+
T Consensus 294 ~Lt~LP~~l---p~sL~~L~Ls~N~L 316 (754)
T PRK15370 294 SIRTLPAHL---PSGITHLNVQSNSL 316 (754)
T ss_pred ccccCcccc---hhhHHHHHhcCCcc
Confidence 444444322 12444444444443
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=5e-12 Score=132.69 Aligned_cols=109 Identities=22% Similarity=0.275 Sum_probs=59.0
Q ss_pred cEEEecCccCCC--CCCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccC
Q 040332 576 RTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGD 652 (1210)
Q Consensus 576 ~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~ 652 (1210)
..++|..|.|+. +..|+.+++|+.|||++|.|+.+ |..+..|.+|-.|.+.++++++++|.+.|+.|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 344555555555 23355566666666666665555 445555555555555554466666666666666666555554
Q ss_pred CCCccccccccccCccccccCCCCCEEEeeccCCCCCCC
Q 040332 653 NSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 653 n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
|.+ .-.....|.+|++|..|.+..|.+..++.
T Consensus 150 n~i-------~Cir~~al~dL~~l~lLslyDn~~q~i~~ 181 (498)
T KOG4237|consen 150 NHI-------NCIRQDALRDLPSLSLLSLYDNKIQSICK 181 (498)
T ss_pred hhh-------cchhHHHHHHhhhcchhcccchhhhhhcc
Confidence 433 12333455555555555555555554443
No 27
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.03 E-value=7.5e-09 Score=120.68 Aligned_cols=287 Identities=16% Similarity=0.161 Sum_probs=182.3
Q ss_pred cccccccHHHHHHHHHHhCC-CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-cCHHHHHHHHHHHh
Q 040332 153 YEAFESRMPTLRSILSALED-PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-QDIRKIQGEIADKL 230 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l 230 (1210)
....+-|. ++++.|.+ .+.|.+.|..++|.|||||+.+....... =..+.|.++++. .++.....-++..+
T Consensus 18 ~~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHH
Confidence 34444554 45555553 47899999999999999999999873322 356999998765 45667777777666
Q ss_pred CCCcccCCcccc------------------------cCccEEEEEeCCCCc---cchhhhcccCCCCCCCeEEEEeeCch
Q 040332 231 GLKFHEESEPGR------------------------EEKKILVILDNIWEN---LDLRVVGIPHGDDHRGCKILLTARSL 283 (1210)
Q Consensus 231 ~~~~~~~~~~~~------------------------~~kr~LlvlDdv~~~---~~~~~~~~~~~~~~~gs~iivTtR~~ 283 (1210)
+...+...+... -.++..+||||-.-. .--+.+...+.....+-..|||||+.
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 533322111100 466789999996533 22222322233344578999999986
Q ss_pred hhhhh--cCCCcceeeec----CCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHH
Q 040332 284 DVLSR--KMDSQQNFAVG----ILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDW 357 (1210)
Q Consensus 284 ~v~~~--~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w 357 (1210)
.-... ..-....++++ .++.+|+.++|....+..-+ +...+.+.+..+|-+-|+..++=.++.+.+.+.-
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~ 246 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQS 246 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH
Confidence 53210 00011223333 57899999999888654333 3346789999999999999998888844443332
Q ss_pred HHHHHHhcCCCCCCccccchhHHH-HHHhhhcCCCccchhhhHhhhccCccccHHHHHHHHhhcCcCCCCCcHHHHHHHH
Q 040332 358 KDALEQLRRPPLKNFMNIQPNAHK-AIKLSYDNLGGEELKNVFLLIGYTVIESIDDLLMYGMGLGLFQGVSKMEEARARV 436 (1210)
Q Consensus 358 ~~~~~~l~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~Li~~w~a~g~~~~~~~~e~~~~~~ 436 (1210)
-..++.. ..-+.. ...=-++.||+ ++|..++-||+++.+..+ |+..-.++ ..+
T Consensus 247 ~~~LsG~-----------~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f~~e-L~~~Ltg~-------------~ng 300 (894)
T COG2909 247 LRGLSGA-----------ASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRFNDE-LCNALTGE-------------ENG 300 (894)
T ss_pred hhhccch-----------HHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHhhHH-HHHHHhcC-------------CcH
Confidence 2222110 011111 12234678998 589999999999855443 33322111 112
Q ss_pred HHHHHHHHhhcceeecccCCCCeEEhhHHHHHHHHHHHcc
Q 040332 437 HTLVHKLKASCMLLDHLSKNEEFFSMHDVVRDVAISIASS 476 (1210)
Q Consensus 437 ~~~~~~L~~~~ll~~~~~~~~~~~~mHdlv~~~~~~~~~~ 476 (1210)
...+++|-+++++...-.++..+|+.|.++.||.+.....
T Consensus 301 ~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 301 QAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 3468899999999766566668999999999999887655
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.01 E-value=2.7e-08 Score=109.40 Aligned_cols=174 Identities=15% Similarity=0.161 Sum_probs=112.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCccc----------
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPG---------- 241 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~---------- 241 (1210)
..+..++.|+|++|+||||+++.+++...... + .++|+ +....+..+++..|+..++..........
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 44556899999999999999999998875321 1 12333 33345778899999999887643321110
Q ss_pred ---ccCccEEEEEeCCCCcc--chhhhccc---CCCCCCCeEEEEeeCchhhhh--------hcCCCcceeeecCCCHHH
Q 040332 242 ---REEKKILVILDNIWENL--DLRVVGIP---HGDDHRGCKILLTARSLDVLS--------RKMDSQQNFAVGILKEVE 305 (1210)
Q Consensus 242 ---~~~kr~LlvlDdv~~~~--~~~~~~~~---~~~~~~gs~iivTtR~~~v~~--------~~~~~~~~~~l~~L~~~~ 305 (1210)
..+++.++|+||++... .++.+... -........|++|....-... ........+.+++++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 06788999999998753 44444321 112223335556554321100 001113467899999999
Q ss_pred HHHHHHHHhCCC---CCCchHHHHHHHHHHHhCCcchHHHHHHHHH
Q 040332 306 AWSLFKKMAGDY---IEGSEFQLVAREVEKECAGLPVSIVTVARAL 348 (1210)
Q Consensus 306 ~~~lf~~~~~~~---~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 348 (1210)
..+++...+... ....-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998776421 1122235788999999999999999998877
No 29
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.98 E-value=4.5e-08 Score=114.19 Aligned_cols=279 Identities=16% Similarity=0.115 Sum_probs=159.3
Q ss_pred cccccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHH
Q 040332 153 YEAFESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIAD 228 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 228 (1210)
+..++||+++++++...+. ......+.|+|++|+|||++++.++++.......-..+++.+....+...++..|+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568899999999988874 334567889999999999999999998765432234667777777778889999999
Q ss_pred HhCCC-cccCC-cccc-----------cCccEEEEEeCCCCcc------chhhhcccCCCCCCC--eEEEEeeCchhhhh
Q 040332 229 KLGLK-FHEES-EPGR-----------EEKKILVILDNIWENL------DLRVVGIPHGDDHRG--CKILLTARSLDVLS 287 (1210)
Q Consensus 229 ~l~~~-~~~~~-~~~~-----------~~kr~LlvlDdv~~~~------~~~~~~~~~~~~~~g--s~iivTtR~~~v~~ 287 (1210)
++... ..... .... .++..+||+|+++... .+..+...+.. ..+ ..||.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhh
Confidence 88652 11111 0000 4567899999998642 22333222211 123 33666666544322
Q ss_pred h------cCCCcceeeecCCCHHHHHHHHHHHhCC-----CCCCchHHHHHHHHHHHhCCcchHHHHHHHHH--H--cC-
Q 040332 288 R------KMDSQQNFAVGILKEVEAWSLFKKMAGD-----YIEGSEFQLVAREVEKECAGLPVSIVTVARAL--R--NN- 351 (1210)
Q Consensus 288 ~------~~~~~~~~~l~~L~~~~~~~lf~~~~~~-----~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l--~--~~- 351 (1210)
. ..-....+.+++++.++..+++..++.. ..++..++.+++......|..+.|+.++-.+. + .+
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 1 0111346799999999999999887631 12222333334333333566788877765432 2 11
Q ss_pred --CChHHHHHHHHHhcCCCCCCccccchhHHHHHHhhhcCCCccchhhhHhhhcc--C----ccccHHHHHHH--HhhcC
Q 040332 352 --KSLFDWKDALEQLRRPPLKNFMNIQPNAHKAIKLSYDNLGGEELKNVFLLIGY--T----VIESIDDLLMY--GMGLG 421 (1210)
Q Consensus 352 --~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~--f----p~~~~~~Li~~--w~a~g 421 (1210)
-+.+..+.+.+... .....-.+..||.+ +..|++.-. . ..+...++... .+++.
T Consensus 268 ~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 24555555555431 12334567889974 444443211 1 12333333321 11211
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhhcceeec
Q 040332 422 LFQGVSKMEEARARVHTLVHKLKASCMLLDH 452 (1210)
Q Consensus 422 ~~~~~~~~e~~~~~~~~~~~~L~~~~ll~~~ 452 (1210)
+-.... ....+.+++++|...+++...
T Consensus 332 ~~~~~~----~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYEPR----THTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCCcC----cHHHHHHHHHHHHhcCCeEEE
Confidence 100000 123345578888888887643
No 30
>PF05729 NACHT: NACHT domain
Probab=98.98 E-value=2.6e-09 Score=108.05 Aligned_cols=139 Identities=22% Similarity=0.259 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEEEEecCCcCHH---HHHHHHHHHhCCCcccCCc----ccccC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKI----FDQVVFAEVSQSQDIR---KIQGEIADKLGLKFHEESE----PGREE 244 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~----~~~~~ 244 (1210)
|++.|+|.+|+||||+++.++.+...... +...+|+..+...... .+...|..+.......... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 58999999999999999999998876544 3467777766544332 3444444444332222221 11178
Q ss_pred ccEEEEEeCCCCccc---------hhhhcccCCC--CCCCeEEEEeeCchhh--hhhcCCCcceeeecCCCHHHHHHHHH
Q 040332 245 KKILVILDNIWENLD---------LRVVGIPHGD--DHRGCKILLTARSLDV--LSRKMDSQQNFAVGILKEVEAWSLFK 311 (1210)
Q Consensus 245 kr~LlvlDdv~~~~~---------~~~~~~~~~~--~~~gs~iivTtR~~~v--~~~~~~~~~~~~l~~L~~~~~~~lf~ 311 (1210)
+++++|+|++++... +..+...+.. ..++.+|+||+|.... ..........+++.++++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 999999999986532 2222211222 2468999999999776 22234444689999999999999998
Q ss_pred HHh
Q 040332 312 KMA 314 (1210)
Q Consensus 312 ~~~ 314 (1210)
++.
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 775
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.92 E-value=3.5e-09 Score=114.16 Aligned_cols=184 Identities=19% Similarity=0.226 Sum_probs=100.1
Q ss_pred ccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHH---------
Q 040332 156 FESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEI--------- 226 (1210)
Q Consensus 156 ~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--------- 226 (1210)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+..+.. .+ .++|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 68999999999999887767899999999999999999999987432 11 34444443333222 12221
Q ss_pred -HHHhCCCccc---------CCcc-cc-----------cCccEEEEEeCCCCcc-ch----------hhhcccCCCCCCC
Q 040332 227 -ADKLGLKFHE---------ESEP-GR-----------EEKKILVILDNIWENL-DL----------RVVGIPHGDDHRG 273 (1210)
Q Consensus 227 -~~~l~~~~~~---------~~~~-~~-----------~~kr~LlvlDdv~~~~-~~----------~~~~~~~~~~~~g 273 (1210)
.+.+...... .... .. .+++++||+||+.... .. ..+........ .
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ-N 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T-T
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC-C
Confidence 1222111110 0000 00 5566999999987665 11 11122222233 3
Q ss_pred eEEEEeeCchhhhhh-------cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHH
Q 040332 274 CKILLTARSLDVLSR-------KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVT 343 (1210)
Q Consensus 274 s~iivTtR~~~v~~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 343 (1210)
..+|++.....+... ..+....+.+++++.+++++++...+.....-+.-.+..++|...+||.|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 344455444433321 2333446999999999999999997643311112345568999999999998764
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.84 E-value=1.4e-06 Score=100.63 Aligned_cols=280 Identities=13% Similarity=0.101 Sum_probs=157.0
Q ss_pred ccccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccC-CC---CeEEEEEecCCcCHHHHHHH
Q 040332 154 EAFESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK-IF---DQVVFAEVSQSQDIRKIQGE 225 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-~F---~~~~wv~vs~~~~~~~~~~~ 225 (1210)
..++||++++++|..++. ......+.|+|++|+|||++++.+++...... .. -..+|+.+....+...++.+
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 478899999999999886 34456899999999999999999998764221 11 13567777777778889999
Q ss_pred HHHHhC---CCcccCC-ccc-----------ccCccEEEEEeCCCCcc-c----hhhhcccC-CCCC--CCeEEEEeeCc
Q 040332 226 IADKLG---LKFHEES-EPG-----------REEKKILVILDNIWENL-D----LRVVGIPH-GDDH--RGCKILLTARS 282 (1210)
Q Consensus 226 i~~~l~---~~~~~~~-~~~-----------~~~kr~LlvlDdv~~~~-~----~~~~~~~~-~~~~--~gs~iivTtR~ 282 (1210)
|+.++. ....... ... ..+++++||||+++... . +..+.... .... ....+|++|+.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999883 3221111 000 04668899999998762 1 22222110 1111 23345555554
Q ss_pred hhhhhh----c--CCCcceeeecCCCHHHHHHHHHHHhC---C-CCCCchHHHHHHHHHHHhCCcc-hHHHHHHHHH--H
Q 040332 283 LDVLSR----K--MDSQQNFAVGILKEVEAWSLFKKMAG---D-YIEGSEFQLVAREVEKECAGLP-VSIVTVARAL--R 349 (1210)
Q Consensus 283 ~~v~~~----~--~~~~~~~~l~~L~~~~~~~lf~~~~~---~-~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l--~ 349 (1210)
...... . .-....+.+++.+.++..+++..++. . ..-.++..+...+++....|.| .|+.++-.+. +
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 332111 0 01124689999999999999988863 1 1122333344556677777887 4433332222 1
Q ss_pred --c---CCChHHHHHHHHHhcCCCCCCccccchhHHHHHHhhhcCCCccchhhhHhhhccC-----ccccHHHHHHHH--
Q 040332 350 --N---NKSLFDWKDALEQLRRPPLKNFMNIQPNAHKAIKLSYDNLGGEELKNVFLLIGYT-----VIESIDDLLMYG-- 417 (1210)
Q Consensus 350 --~---~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~f-----p~~~~~~Li~~w-- 417 (1210)
. .-+.+..+.+.+.+. .....-++..||.+ .|..+..++.. +.+...++...+
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 123444444444321 12334456788874 24333333211 135555555532
Q ss_pred hhcCcCCCCCcHHHHHHHHHHHHHHHHhhcceeec
Q 040332 418 MGLGLFQGVSKMEEARARVHTLVHKLKASCMLLDH 452 (1210)
Q Consensus 418 ~a~g~~~~~~~~e~~~~~~~~~~~~L~~~~ll~~~ 452 (1210)
+++.+-.... ....+.++++.|...+++...
T Consensus 320 ~~~~~~~~~~----~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDPL----TQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCCC----cHHHHHHHHHHHHhcCCeEEE
Confidence 1221100111 134455678888888888654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=6.1e-09 Score=102.67 Aligned_cols=106 Identities=30% Similarity=0.382 Sum_probs=25.1
Q ss_pred CCcEEEecCccCCCCCCCC-CCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccC
Q 040332 574 NLRTLSLYYCKLLDISGIG-DLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGD 652 (1210)
Q Consensus 574 ~L~~L~L~~~~~~~~~~i~-~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~ 652 (1210)
.++.|+|++|.+...+.++ .+.+|+.|++++|.++.++ .+..+++|++|++++| .+..++..+...+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcC
Confidence 4455555555444444444 3445555555555555443 3444555555555554 44444433222345555555555
Q ss_pred CCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 653 NSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 653 n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
|.+..+ .....++.+++|+.|++.+|.+.
T Consensus 98 N~I~~l------~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 98 NKISDL------NELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S---SC------CCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCCh------HHhHHHHcCCCcceeeccCCccc
Confidence 544211 11234445555555555555443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=6.9e-10 Score=112.18 Aligned_cols=136 Identities=21% Similarity=0.221 Sum_probs=119.6
Q ss_pred hcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 547 ERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
...+.|..+||++|.|+.+.+++.-++.+|.|++++|.+....++..|.+|+.||+++|.+.++-..-.+|-|.+.|.++
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 45678999999999999999999999999999999999999888999999999999999998887666788899999999
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCC
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
+| .++.+.. +++|-+|..|++.+|++... .....|++|+.|+.|.+.+|.+..++.
T Consensus 361 ~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~l------deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 361 QN-KIETLSG--LRKLYSLVNLDLSSNQIEEL------DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hh-hHhhhhh--hHhhhhheeccccccchhhH------HHhcccccccHHHHHhhcCCCccccch
Confidence 98 7888775 69999999999999987432 344689999999999999998887764
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=3e-09 Score=104.80 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=55.3
Q ss_pred hcCCcceEEEecCcccccCCcccc-CCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCccc-CCCCCCCEEe
Q 040332 547 ERMIQVRVINLSYVDLLSLPSSLV-LLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEV-GELICLKLLD 624 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~ 624 (1210)
.+...+|.|+|+++.|+.+. .++ .+.+|+.|++++|.+...+.+..+++|++|++++|.++.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 44557899999999999875 465 68899999999999999889999999999999999999987666 4689999999
Q ss_pred cCCCCCCCccCh-hhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEee
Q 040332 625 LRDCSKLEVIPP-HILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLR 682 (1210)
Q Consensus 625 l~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 682 (1210)
+++| .+..+.. ..++.+++|++|++.+|++... ..-....+..+++|+.|+-.
T Consensus 95 L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK----KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS----TTHHHHHHHH-TT-SEETTE
T ss_pred CcCC-cCCChHHhHHHHcCCCcceeeccCCcccch----hhHHHHHHHHcChhheeCCE
Confidence 9998 6655433 2367899999999999987421 11234567788999988754
No 36
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.78 E-value=2.3e-07 Score=103.91 Aligned_cols=174 Identities=17% Similarity=0.115 Sum_probs=103.0
Q ss_pred cccccccHHHHHHHHHHhC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHH
Q 040332 153 YEAFESRMPTLRSILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIA 227 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 227 (1210)
..+|+|+++.++++..++. ......+.++|++|+|||+||+.+++..... | ..+..+.......+ ...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHH
Confidence 4679999999999888876 2345678899999999999999999987532 2 12222211122222 2222
Q ss_pred HHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccC-------------------CCCCCCeEEEEeeCchhhh
Q 040332 228 DKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPH-------------------GDDHRGCKILLTARSLDVL 286 (1210)
Q Consensus 228 ~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~-------------------~~~~~gs~iivTtR~~~v~ 286 (1210)
..+ +...++++||+.... ..+.+...+ ....+.+-|..||+...+.
T Consensus 77 ~~~-------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~ 143 (305)
T TIGR00635 77 TNL-------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLT 143 (305)
T ss_pred Hhc-------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccC
Confidence 222 123466667665321 111111000 0011245566677765443
Q ss_pred hhcCC-CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHH
Q 040332 287 SRKMD-SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVAR 346 (1210)
Q Consensus 287 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 346 (1210)
..... ....+.+++++.++..+++.+.+..... .--.+....|++.|+|.|-.+..++.
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 22111 1346899999999999999988863221 12245668899999999966554444
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.77 E-value=1.9e-09 Score=122.39 Aligned_cols=139 Identities=22% Similarity=0.213 Sum_probs=84.8
Q ss_pred hhhhcCCcceEEEecCcccc-----cCCccccCCCCCcEEEecCccCCC--------CCCCCCCCCCcEEEeecCCCc-c
Q 040332 544 NFFERMIQVRVINLSYVDLL-----SLPSSLVLLSNLRTLSLYYCKLLD--------ISGIGDLKKLEFLCLRGCDIR-Q 609 (1210)
Q Consensus 544 ~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~--------~~~i~~L~~L~~L~l~~~~l~-~ 609 (1210)
.+|..+..|++|+++++.+. .++..+...++|+.|+++++.+.. +..+..+.+|+.|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34566777888888888874 456667777888888888877652 234566777888888777665 2
Q ss_pred cCcccCCCCC---CCEEecCCCCCCCc-----cChhhhcCC-CcccEEEccCCCCccccccccccCccccccCCCCCEEE
Q 040332 610 LPIEVGELIC---LKLLDLRDCSKLEV-----IPPHILSNL-SHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQ 680 (1210)
Q Consensus 610 lp~~i~~l~~---L~~L~l~~~~~~~~-----~p~~~l~~L-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~ 680 (1210)
.+..+..+.+ |++|++++| .+.. +... +..+ ++|++|++++|.+.... .......+..+++|+.|+
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS---CEALAKALRANRDLKELN 171 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH---HHHHHHHHHhCCCcCEEE
Confidence 3333433333 777777777 3331 1112 3455 77777777777652100 012233455556677777
Q ss_pred eeccCCC
Q 040332 681 LRIKDIN 687 (1210)
Q Consensus 681 l~~~~~~ 687 (1210)
+++|.+.
T Consensus 172 l~~n~l~ 178 (319)
T cd00116 172 LANNGIG 178 (319)
T ss_pred CcCCCCc
Confidence 6655443
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.74 E-value=4e-07 Score=102.44 Aligned_cols=258 Identities=16% Similarity=0.086 Sum_probs=140.5
Q ss_pred cCcccccccHHHHHHHHHHhC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGE 225 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 225 (1210)
....+|+|++..++.+..++. ....+.+.++|++|+||||+|+.+++..... + .++..+. ......+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHH
Confidence 357789999999998877664 2345678999999999999999999987632 2 1122211 111222333
Q ss_pred HHHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhccc---------CCC----------CCCCeEEEEeeCchh
Q 040332 226 IADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIP---------HGD----------DHRGCKILLTARSLD 284 (1210)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~---------~~~----------~~~gs~iivTtR~~~ 284 (1210)
+...+ ++.-+|++|++.... ..+.+... +.. ..+.+-|..|||...
T Consensus 96 ~l~~l-------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~ 162 (328)
T PRK00080 96 ILTNL-------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGL 162 (328)
T ss_pred HHHhc-------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCccc
Confidence 33332 223477788876431 11111100 000 012344666777544
Q ss_pred hhhhcCC-CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 040332 285 VLSRKMD-SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDWKDALEQ 363 (1210)
Q Consensus 285 v~~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~ 363 (1210)
+...... ....+++++++.++..+++.+.+..... .--.+.+..|++.|+|.|-.+..+...+. .|..+.+
T Consensus 163 l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~- 234 (328)
T PRK00080 163 LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKG- 234 (328)
T ss_pred CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcC-
Confidence 4321111 1246899999999999999988863221 12235688999999999954444444332 2221110
Q ss_pred hcCCCCCCccccchhHHHHHHhhhcCCCccchhhhHh-hhccCc--cccHHHHHHHHhhcCcCCCCCcHHHHHHHHHHHH
Q 040332 364 LRRPPLKNFMNIQPNAHKAIKLSYDNLGGEELKNVFL-LIGYTV--IESIDDLLMYGMGLGLFQGVSKMEEARARVHTLV 440 (1210)
Q Consensus 364 l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl-~~s~fp--~~~~~~Li~~w~a~g~~~~~~~~e~~~~~~~~~~ 440 (1210)
..... . .........+...|..|++. .+.-+. ....|+ .+..+.+.... | ...+.+++ .+
T Consensus 235 --~~~I~-~-~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~a~~l---g-----~~~~~~~~----~~ 297 (328)
T PRK00080 235 --DGVIT-K-EIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGGPVGLDTLAAAL---G-----EERDTIED----VY 297 (328)
T ss_pred --CCCCC-H-HHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCCceeHHHHHHHH---C-----CCcchHHH----Hh
Confidence 00000 0 01233445566677778764 344443 555565 45555543332 1 11222222 34
Q ss_pred H-HHHhhcceeec
Q 040332 441 H-KLKASCMLLDH 452 (1210)
Q Consensus 441 ~-~L~~~~ll~~~ 452 (1210)
+ .|++.+|++..
T Consensus 298 e~~Li~~~li~~~ 310 (328)
T PRK00080 298 EPYLIQQGFIQRT 310 (328)
T ss_pred hHHHHHcCCcccC
Confidence 4 67778888644
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=1.2e-09 Score=120.43 Aligned_cols=178 Identities=24% Similarity=0.296 Sum_probs=146.1
Q ss_pred EEEecccccccCC-CcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCc
Q 040332 505 SIVLRDVKTNLLP-ELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYC 583 (1210)
Q Consensus 505 ~l~l~~~~~~~l~-~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 583 (1210)
...++.|.+..+| ++..|-.|..+.+..+... .++ ....++..|.+|||+.|.+..+|..+|.| -|++|.+++|
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r---~ip-~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIR---TIP-EAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccce---ecc-hhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecC
Confidence 3445556666666 3455666777755554432 223 33678999999999999999999999987 5999999999
Q ss_pred cCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccc
Q 040332 584 KLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEV 662 (1210)
Q Consensus 584 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~ 662 (1210)
+++. |+.|+.+..|..||.+.|.+..+|..++.+.+|+.|.++.| .+..+|++. .. -.|..|+++.|++
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El-~~-LpLi~lDfScNki------- 223 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEEL-CS-LPLIRLDFSCNKI------- 223 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHH-hC-CceeeeecccCce-------
Confidence 9999 99999999999999999999999999999999999999998 888999985 64 4588999998876
Q ss_pred cccCccccccCCCCCEEEeeccCCCCCCCccccccC
Q 040332 663 DGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKL 698 (1210)
Q Consensus 663 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L 698 (1210)
...|..|.+|++|++|.+.+|.+..-|..+.....
T Consensus 224 -s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGk 258 (722)
T KOG0532|consen 224 -SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGK 258 (722)
T ss_pred -eecchhhhhhhhheeeeeccCCCCCChHHHHhccc
Confidence 36788999999999999999999998887655543
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.70 E-value=1.3e-07 Score=101.34 Aligned_cols=225 Identities=15% Similarity=0.095 Sum_probs=129.7
Q ss_pred cCcccccccHHHH---HHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHH
Q 040332 151 KDYEAFESRMPTL---RSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIA 227 (1210)
Q Consensus 151 ~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 227 (1210)
....+++|.+..+ .-|..++..+.+...-+||++|+||||||+.+....... | ..+|-..+-..-+++++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREII 93 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHHH
Confidence 3456667766554 234455557888999999999999999999999976543 3 33333322222223333
Q ss_pred HHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE--eeCchhhh--hhcCCCcceeeecCC
Q 040332 228 DKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL--TARSLDVL--SRKMDSQQNFAVGIL 301 (1210)
Q Consensus 228 ~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv--TtR~~~v~--~~~~~~~~~~~l~~L 301 (1210)
+.-.... ..++|.+|++|.|..- .+-+.+ +|.-.+|.-|+| ||.++... ........++.+++|
T Consensus 94 e~a~~~~-------~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L 163 (436)
T COG2256 94 EEARKNR-------LLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPL 163 (436)
T ss_pred HHHHHHH-------hcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecC
Confidence 2211000 0578999999999754 344433 344456777776 77775432 223455679999999
Q ss_pred CHHHHHHHHHHHhCCCC---C--Cc-hHHHHHHHHHHHhCCcchHHHHHH---HHHHcCC---ChHHHHHHHHHhcCCCC
Q 040332 302 KEVEAWSLFKKMAGDYI---E--GS-EFQLVAREVEKECAGLPVSIVTVA---RALRNNK---SLFDWKDALEQLRRPPL 369 (1210)
Q Consensus 302 ~~~~~~~lf~~~~~~~~---~--~~-~~~~~~~~i~~~c~glPlai~~~~---~~l~~~~---~~~~w~~~~~~l~~~~~ 369 (1210)
+.++-.+++.+.+-+.. . .. --++.-.-+++.++|---++-... ..+.... ..+..+++++.-....
T Consensus 164 ~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~- 242 (436)
T COG2256 164 SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARF- 242 (436)
T ss_pred CHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhcc-
Confidence 99999999998542111 1 11 123456678888888653322222 2222111 2344444444321111
Q ss_pred CCccccchhHHHHHHhhhcCCCcc
Q 040332 370 KNFMNIQPNAHKAIKLSYDNLGGE 393 (1210)
Q Consensus 370 ~~~~~~~~~~~~~l~~sy~~L~~~ 393 (1210)
+...+...++..+|.-|...=.++
T Consensus 243 Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 243 DKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred CCCcchHHHHHHHHHHhhccCCcC
Confidence 111123567788888888877653
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=1.8e-07 Score=108.56 Aligned_cols=179 Identities=16% Similarity=0.140 Sum_probs=111.4
Q ss_pred CcccccccHHHHHH---HHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHH
Q 040332 152 DYEAFESRMPTLRS---ILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIAD 228 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~---l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 228 (1210)
...+|+|++..+.. +..++.......+.++|++|+||||+|+.+++..... |+.++....-..-++++.+
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-------~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-------FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------EEEEecccccHHHHHHHHH
Confidence 45678899888666 7777777777889999999999999999999876532 2333222221222233333
Q ss_pred HhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE--eeCchh--hhhhcCCCcceeeecCCC
Q 040332 229 KLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL--TARSLD--VLSRKMDSQQNFAVGILK 302 (1210)
Q Consensus 229 ~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv--TtR~~~--v~~~~~~~~~~~~l~~L~ 302 (1210)
...... ..+++.+|++|+++.. .+.+.+...+. .|..++| ||.+.. +..........+.+.+++
T Consensus 83 ~~~~~~-------~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls 152 (413)
T PRK13342 83 EARQRR-------SAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLS 152 (413)
T ss_pred HHHHhh-------hcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCC
Confidence 321110 1457889999999865 34444443332 2444444 344432 211223334689999999
Q ss_pred HHHHHHHHHHHhCCCC-CC-chHHHHHHHHHHHhCCcchHHHHHHHH
Q 040332 303 EVEAWSLFKKMAGDYI-EG-SEFQLVAREVEKECAGLPVSIVTVARA 347 (1210)
Q Consensus 303 ~~~~~~lf~~~~~~~~-~~-~~~~~~~~~i~~~c~glPlai~~~~~~ 347 (1210)
.++.++++.+.+.... .. .-..+..+.|++.|+|.+..+..+...
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999988764211 11 222456778999999988766554443
No 42
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.64 E-value=1.7e-08 Score=108.97 Aligned_cols=287 Identities=20% Similarity=0.211 Sum_probs=186.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCC-CeEEEEEecCCcCHHHHHHHHHHHhCCCccc-CCcccc-----cCcc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIF-DQVVFAEVSQSQDIRKIQGEIADKLGLKFHE-ESEPGR-----EEKK 246 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~-----~~kr 246 (1210)
..+.+.++|.|||||||++-++.. .... | +.+.++...+-.+...+.-.....++..... ...... .++|
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 458899999999999999999999 5543 7 5577888877777777777777777766544 222211 8999
Q ss_pred EEEEEeCCCCcc-chhhhcccCCCCCCCeEEEEeeCchhhhhhcCCCcceeeecCCCHH-HHHHHHHHHhCC----CCCC
Q 040332 247 ILVILDNIWENL-DLRVVGIPHGDDHRGCKILLTARSLDVLSRKMDSQQNFAVGILKEV-EAWSLFKKMAGD----YIEG 320 (1210)
Q Consensus 247 ~LlvlDdv~~~~-~~~~~~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~----~~~~ 320 (1210)
.++|+||..+.. .-..+...+..+...-.|+.|+|..-. ......+.+++|+.- ++.++|...+.. -.-.
T Consensus 90 ~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 90 ALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 999999987652 222233334445556678899987543 445567888888865 799999877631 1112
Q ss_pred chHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHH----HHHHHHhcCCCCCCccccchhHHHHHHhhhcCCCccchh
Q 040332 321 SEFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDW----KDALEQLRRPPLKNFMNIQPNAHKAIKLSYDNLGGEELK 396 (1210)
Q Consensus 321 ~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w----~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk 396 (1210)
..-...+.+|.++..|.|++|..+++..+.- ...+- .+-+..+... .....-.+....+.+.+||.-|... -+
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~ 242 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ER 242 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HH
Confidence 2335678899999999999999999998842 22221 1112222221 1111112345678899999999875 58
Q ss_pred hhHhhhccCc-cccHHHHHHHHhhcCcCCCCCcHHHHHHHHHHHHHHHHhhcceeecccCCCCeEEhhHHHHHHHHHHHc
Q 040332 397 NVFLLIGYTV-IESIDDLLMYGMGLGLFQGVSKMEEARARVHTLVHKLKASCMLLDHLSKNEEFFSMHDVVRDVAISIAS 475 (1210)
Q Consensus 397 ~cfl~~s~fp-~~~~~~Li~~w~a~g~~~~~~~~e~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~mHdlv~~~~~~~~~ 475 (1210)
.-|.-++.|. .|..+ ...|.+-|-.. +........-+..+++.+++..........|+.-+-+|.|+..+..
T Consensus 243 ~~~~rLa~~~g~f~~~--l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 243 ALFGRLAVFVGGFDLG--LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred HHhcchhhhhhhhccc--HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888899998 56555 33444443211 0111112234566778887754333333467777888888877665
Q ss_pred cC
Q 040332 476 SE 477 (1210)
Q Consensus 476 ~~ 477 (1210)
+.
T Consensus 316 r~ 317 (414)
T COG3903 316 RS 317 (414)
T ss_pred hh
Confidence 43
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.60 E-value=3.9e-07 Score=96.35 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=94.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEe
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILD 252 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlD 252 (1210)
...+.+.++|.+|+|||+||+.+++....+ ...+.|+++.... ....++.+.+ .+.-+||+|
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~~~~~~~~-------------~~~dlLilD 98 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFSPAVLENL-------------EQQDLVCLD 98 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhhHHHHhhc-------------ccCCEEEEe
Confidence 344678999999999999999999987544 3456777764211 1111222222 122489999
Q ss_pred CCCCc---cchhh-hcccCCCC-CCCeEEEEeeCch----------hhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCC
Q 040332 253 NIWEN---LDLRV-VGIPHGDD-HRGCKILLTARSL----------DVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDY 317 (1210)
Q Consensus 253 dv~~~---~~~~~-~~~~~~~~-~~gs~iivTtR~~----------~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 317 (1210)
|+|.. ..|+. +...+... ..|..|||+|.+. .+.+. +.....+++++++.++.++++++.+...
T Consensus 99 Di~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sR-l~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 99 DLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASR-LTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred ChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHH-HhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 99963 45542 22222211 2355665554443 33332 4445688999999999999999988632
Q ss_pred CCCchHHHHHHHHHHHhCCcchHHHHHHH
Q 040332 318 IEGSEFQLVAREVEKECAGLPVSIVTVAR 346 (1210)
Q Consensus 318 ~~~~~~~~~~~~i~~~c~glPlai~~~~~ 346 (1210)
. -.--+++..-|++++.|..-++..+-.
T Consensus 178 ~-l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 178 G-IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred C-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 2 112245667888888776655544433
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=7.2e-09 Score=114.48 Aligned_cols=152 Identities=22% Similarity=0.342 Sum_probs=128.8
Q ss_pred cccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCC
Q 040332 540 SIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELI 618 (1210)
Q Consensus 540 ~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~ 618 (1210)
.+|.. +..+..|..+.|..|.+..+|.+++++..|.+|+|+.|++.. |..++.|+ |+.|-+++|+++.+|..|+-+.
T Consensus 89 elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLP 166 (722)
T ss_pred cCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccch
Confidence 44444 466778899999999999999999999999999999999998 88888876 8999999999999999999999
Q ss_pred CCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCcc-cccc
Q 040332 619 CLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL-FFEK 697 (1210)
Q Consensus 619 ~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~ 697 (1210)
.|.+|+.+.| .+..+|..+ +.|.+|+.|.+..|.+. ..+..+..| .|..|++++|++..+|-.+ .+..
T Consensus 167 tl~~ld~s~n-ei~slpsql-~~l~slr~l~vrRn~l~--------~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~ 235 (722)
T KOG0532|consen 167 TLAHLDVSKN-EIQSLPSQL-GYLTSLRDLNVRRNHLE--------DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRH 235 (722)
T ss_pred hHHHhhhhhh-hhhhchHHh-hhHHHHHHHHHhhhhhh--------hCCHHHhCC-ceeeeecccCceeecchhhhhhhh
Confidence 9999999998 889999985 99999999999988773 456666644 4779999999999999764 4555
Q ss_pred CceeEEE
Q 040332 698 LERYRIL 704 (1210)
Q Consensus 698 L~~l~~~ 704 (1210)
|+.+.+.
T Consensus 236 Lq~l~Le 242 (722)
T KOG0532|consen 236 LQVLQLE 242 (722)
T ss_pred heeeeec
Confidence 5555543
No 45
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.52 E-value=6.1e-08 Score=110.03 Aligned_cols=139 Identities=24% Similarity=0.205 Sum_probs=89.9
Q ss_pred hhhhcCCcceEEEecCcccc-cCCccccCCCC---CcEEEecCccCCC------CCCCCCC-CCCcEEEeecCCCc----
Q 040332 544 NFFERMIQVRVINLSYVDLL-SLPSSLVLLSN---LRTLSLYYCKLLD------ISGIGDL-KKLEFLCLRGCDIR---- 608 (1210)
Q Consensus 544 ~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~---L~~L~L~~~~~~~------~~~i~~L-~~L~~L~l~~~~l~---- 608 (1210)
..|..+.+|+.|++++|.+. ..+..+..+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.++
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 34566778888888888776 33444444444 8888888887763 2345566 78888888888776
Q ss_pred -ccCcccCCCCCCCEEecCCCCCCCc-----cChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEee
Q 040332 609 -QLPIEVGELICLKLLDLRDCSKLEV-----IPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLR 682 (1210)
Q Consensus 609 -~lp~~i~~l~~L~~L~l~~~~~~~~-----~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 682 (1210)
.++..+..+++|++|++++| .+.. ++.. +..+++|++|++++|.+.... .......+..+++|+.|+++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~---~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 155 EALAKALRANRDLKELNLANN-GIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDEG---ASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHH-HHhCCCCCEEeccCCccChHH---HHHHHHHhcccCCCCEEecC
Confidence 34555667778888888887 4441 2222 355568888888877652111 01233455667778888888
Q ss_pred ccCCC
Q 040332 683 IKDIN 687 (1210)
Q Consensus 683 ~~~~~ 687 (1210)
+|.+.
T Consensus 230 ~n~l~ 234 (319)
T cd00116 230 DNNLT 234 (319)
T ss_pred CCcCc
Confidence 77654
No 46
>PF13173 AAA_14: AAA domain
Probab=98.48 E-value=4.4e-07 Score=86.36 Aligned_cols=117 Identities=20% Similarity=0.191 Sum_probs=82.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHH----HHHHHHHhCCCcccCCcccccCccEEEE
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKI----QGEIADKLGLKFHEESEPGREEKKILVI 250 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~----~~~i~~~l~~~~~~~~~~~~~~kr~Llv 250 (1210)
.+++.|.|+.|+||||++++++++.. ....++|++.......... .+.+.+.. ..++.+++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~i~ 66 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELI------------KPGKKYIF 66 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhh------------ccCCcEEE
Confidence 47899999999999999999998875 2456778876654432211 11222211 23678899
Q ss_pred EeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhhh-----cCCCcceeeecCCCHHHH
Q 040332 251 LDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDVLSR-----KMDSQQNFAVGILKEVEA 306 (1210)
Q Consensus 251 lDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~-----~~~~~~~~~l~~L~~~~~ 306 (1210)
+|++....+|......+.+..+..+|++|+.+...... ..+....+++.||+..|.
T Consensus 67 iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 67 IDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 99999998887766666565567899999998666522 234455789999998763
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=7.8e-06 Score=96.55 Aligned_cols=187 Identities=12% Similarity=0.164 Sum_probs=121.3
Q ss_pred cCcccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSD-------------------KIFDQVVF 210 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 210 (1210)
..+.+++|.+..++.|.+++..++ .+.+-++|..|+||||+|+.+.+....+ ..|..+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 356788999999999999998665 4566799999999999999998876321 12333566
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCc-hhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARS-LDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~-~~v~~ 287 (1210)
++.+....+.++ +++++....... .++.-++|||+++.. ..|..+...+-.-....++|+||++ ..+..
T Consensus 93 IDAas~rgVDdI-ReLIe~a~~~P~-------~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 93 MDAASNRGVDEM-AALLERAVYAPV-------DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred ecccccccHHHH-HHHHHHHHhccc-------cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 655544444433 444444321111 344558889999866 3466655444333446777776665 44433
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc-hHHHHHHH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP-VSIVTVAR 346 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~ 346 (1210)
........+.++.++.++..+.+.+.+..+.. .--.+..+.|++.++|.. -|+..+-.
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33445578999999999999999888753221 112455678999998854 45554333
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.4e-08 Score=104.56 Aligned_cols=218 Identities=18% Similarity=0.204 Sum_probs=120.7
Q ss_pred CCCCCCCEEecCCCCCCCccCh-hhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCcc
Q 040332 615 GELICLKLLDLRDCSKLEVIPP-HILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL 693 (1210)
Q Consensus 615 ~~l~~L~~L~l~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 693 (1210)
.++.+|+...+.++ .+...+. +....+++++.|++++|-+..|.. ...-...|++|+.|+++.|.+...-...
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-----v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP-----VLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHH-----HHHHHHhcccchhcccccccccCCcccc
Confidence 44555555555554 3333332 233556666666666655543321 2233445666666666655544221110
Q ss_pred ccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEE
Q 040332 694 FFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLW 773 (1210)
Q Consensus 694 ~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~ 773 (1210)
....+++|+.|.++.|... ++++..-+. .+|+|+.|.
T Consensus 192 ----------------------------------------~~~~l~~lK~L~l~~CGls-~k~V~~~~~--~fPsl~~L~ 228 (505)
T KOG3207|consen 192 ----------------------------------------TTLLLSHLKQLVLNSCGLS-WKDVQWILL--TFPSLEVLY 228 (505)
T ss_pred ----------------------------------------chhhhhhhheEEeccCCCC-HHHHHHHHH--hCCcHHHhh
Confidence 0012567777888777333 444443333 367777777
Q ss_pred eeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEE
Q 040332 774 IEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQI 853 (1210)
Q Consensus 774 l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l 853 (1210)
+.++..+..- ......++.|+.|+|++.+.+.. +.....+.||.|..|.+
T Consensus 229 L~~N~~~~~~-----------------------------~~~~~i~~~L~~LdLs~N~li~~-~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 229 LEANEIILIK-----------------------------ATSTKILQTLQELDLSNNNLIDF-DQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hhccccccee-----------------------------cchhhhhhHHhhccccCCccccc-ccccccccccchhhhhc
Confidence 7776422110 01111236788888988665543 33445688999999999
Q ss_pred eccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecC
Q 040332 854 WGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRC 916 (1210)
Q Consensus 854 ~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C 916 (1210)
+.|. +.++...+.+ .......||+|++|++.. +++.+|+.-.. ....++|+.|.+...
T Consensus 279 s~tg-i~si~~~d~~--s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~-l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 279 SSTG-IASIAEPDVE--SLDKTHTFPKLEYLNISE-NNIRDWRSLNH-LRTLENLKHLRITLN 336 (505)
T ss_pred cccC-cchhcCCCcc--chhhhcccccceeeeccc-Cccccccccch-hhccchhhhhhcccc
Confidence 9887 6665432211 112345799999999988 56666655433 455677777765443
No 49
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=2.9e-06 Score=102.23 Aligned_cols=188 Identities=14% Similarity=0.166 Sum_probs=120.2
Q ss_pred CcccccccHHHHHHHHHHhCCCCceE-EEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNM-LGIYGMGGIGKTMLAEEVARKIKSDK-------------------IFDQVVFA 211 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~i~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv 211 (1210)
...+++|.+..++.|.+++..++..- +.++|+.|+||||+|+.+++...... .|.-++++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 56788999999999999988766654 58999999999999999998864321 12223445
Q ss_pred EecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE-eeCchhhhhh
Q 040332 212 EVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL-TARSLDVLSR 288 (1210)
Q Consensus 212 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TtR~~~v~~~ 288 (1210)
..+....+.. +++|.+.+.... ..+++-++|+|++... ..++.+...+-......++|+ ||....+...
T Consensus 94 dAas~~kVDd-IReLie~v~~~P-------~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 94 DAASRTKVDD-TRELLDNVQYRP-------SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred ccccccCHHH-HHHHHHHHHhhh-------hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 4432233333 355555442211 1467779999999865 455555444433233455544 5555555433
Q ss_pred cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch-HHHHHHHHH
Q 040332 289 KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV-SIVTVARAL 348 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~l 348 (1210)
.......|++++++.++..+.+.+.+.... -.--.+....|++.++|.|- |+..+-..+
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnLLdQal 225 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSLTDQAI 225 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 334457899999999999999988764321 11223467789999999775 444433333
No 50
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=7.3e-06 Score=93.25 Aligned_cols=181 Identities=11% Similarity=0.151 Sum_probs=114.8
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDK-------------------IFDQVVFA 211 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv 211 (1210)
...+++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++...... .+....++
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 456788999999999998876554 5678999999999999999998764211 12223344
Q ss_pred EecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCc-hhhhhh
Q 040332 212 EVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTARS-LDVLSR 288 (1210)
Q Consensus 212 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTtR~-~~v~~~ 288 (1210)
..+....... .+++.+.+.... ..+++-++|+|+++... .++.+...+.......++|++|.+ ..+...
T Consensus 94 ~~~~~~~v~~-ir~i~~~~~~~p-------~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 94 DAASRTKVEE-MREILDNIYYSP-------SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred cccccCCHHH-HHHHHHHHhcCc-------ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 4332233333 445555442111 03456689999998663 455555444443446666666654 334322
Q ss_pred cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHH
Q 040332 289 KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSI 341 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 341 (1210)
..+....+++.+++.++..+.+.+.+..... .--.+.+..|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 2334568999999999999888876642211 112345678899999977543
No 51
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=3.1e-06 Score=98.54 Aligned_cols=185 Identities=14% Similarity=0.175 Sum_probs=120.6
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc------------------------CCC
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD------------------------KIF 205 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~------------------------~~F 205 (1210)
..+.+++|.+..++.|.+++..++. ..+-++|..|+||||+|+.+.+..... ..|
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 3567889999999999999987665 456889999999999999999876431 112
Q ss_pred CeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeE-EEEeeCc
Q 040332 206 DQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCK-ILLTARS 282 (1210)
Q Consensus 206 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~-iivTtR~ 282 (1210)
..+++++.+....+.++ +++.+.+..... .++.-++|+|+++.. ..++.+...+-.-..+.+ |++||..
T Consensus 93 pDviEIdAas~~gVDdI-ReLie~~~~~P~-------~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 93 VDYIEMDAASNRGVDEM-AQLLDKAVYAPT-------AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred CcceEecccccCCHHHH-HHHHHHHHhchh-------cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 23455555544444443 344444322111 456668999999865 455555544433233444 5666666
Q ss_pred hhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 283 LDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 283 ~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
..+..........+.++.++.++..+.+.+.+....... ..+..+.|++.++|.|.....+
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 666544344557899999999999999887764322111 1345578999999988644443
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=3.2e-07 Score=101.39 Aligned_cols=146 Identities=17% Similarity=0.224 Sum_probs=73.4
Q ss_pred cCcccEEEEeccccccccCCCCccccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhccc------
Q 040332 1040 MNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVD------ 1113 (1210)
Q Consensus 1040 l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~------ 1113 (1210)
+..+..|+|++| .++++| ...++|++|.|++|.+|+.+ |..+ .++|+.|+|++|.++..+|..-..
T Consensus 51 ~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsL-P~~L---P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n 122 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTL-PGSI---PEGLEKLTVCHCPEISGLPESVRSLEIKGS 122 (426)
T ss_pred hcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccC-Cchh---hhhhhheEccCcccccccccccceEEeCCC
Confidence 355667777766 566654 23345777777777776665 3222 246677777777666555421000
Q ss_pred ccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCccccCCCCcCCCceeEEEecccccccc-cccc
Q 040332 1114 DAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSGGELSTPKLLKVQLDEFNKELW-TWER 1192 (1210)
Q Consensus 1114 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~~~L~~l~i~~C~~~~~-~~~~ 1192 (1210)
....-...+++|+.|.+.++....... ......++|+.|.|.+|..+. +|.++ .++|+.|++..|....| ....
T Consensus 123 ~~~~L~~LPssLk~L~I~~~n~~~~~~--lp~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n~~~sLeI~~~ 197 (426)
T PRK15386 123 ATDSIKNVPNGLTSLSINSYNPENQAR--IDNLISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHIEQKTTWNISFE 197 (426)
T ss_pred CCcccccCcchHhheeccccccccccc--cccccCCcccEEEecCCCccc-Ccccc--cccCcEEEecccccccccCccc
Confidence 000000122344444443221110000 000112689999999988663 55443 25888888876433332 2334
Q ss_pred chhHHH
Q 040332 1193 DLNTTI 1198 (1210)
Q Consensus 1193 ~lp~~l 1198 (1210)
.+|..+
T Consensus 198 sLP~nl 203 (426)
T PRK15386 198 GFPDGL 203 (426)
T ss_pred cccccc
Confidence 555555
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=98.39 E-value=2.8e-05 Score=92.19 Aligned_cols=185 Identities=15% Similarity=0.102 Sum_probs=112.3
Q ss_pred cCcccccccHHHHHHHHHHhCC----CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALED----PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEI 226 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~----~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 226 (1210)
....+++|++..++.+.+|+.. ...+.+.|+|++|+||||+|+.++++.. |+. +-++++...+.. .+..+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTAD-VIERV 84 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccHH-HHHHH
Confidence 3466789999999999998862 2268899999999999999999999874 333 334445433333 33333
Q ss_pred HHHhCCCcccCCcccccCccEEEEEeCCCCcc------chhhhcccCCCCCCCeEEEEeeCchh-hhh-hcCCCcceeee
Q 040332 227 ADKLGLKFHEESEPGREEKKILVILDNIWENL------DLRVVGIPHGDDHRGCKILLTARSLD-VLS-RKMDSQQNFAV 298 (1210)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~------~~~~~~~~~~~~~~gs~iivTtR~~~-v~~-~~~~~~~~~~l 298 (1210)
+........-. ..++-+||+|+++... .+..+...+.. .+..||+|+.+.. ... ........+.+
T Consensus 85 i~~~~~~~sl~-----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f 157 (482)
T PRK04195 85 AGEAATSGSLF-----GARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEF 157 (482)
T ss_pred HHHhhccCccc-----CCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEe
Confidence 33321110000 1357799999998642 23444333321 2344666664422 111 11223457899
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 040332 299 GILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALR 349 (1210)
Q Consensus 299 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 349 (1210)
.+++.++....+.+.+......- -.+....|++.++|-.-.+......+.
T Consensus 158 ~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 158 KRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 99999999998888774222111 135678899999987655544443344
No 54
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=7.1e-06 Score=91.70 Aligned_cols=177 Identities=18% Similarity=0.201 Sum_probs=118.1
Q ss_pred cccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhh----ccCCCCeEEEEEe-cCCcCHHHHHHHH
Q 040332 153 YEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIK----SDKIFDQVVFAEV-SQSQDIRKIQGEI 226 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~~~~~i 226 (1210)
..+++|.+..++.+.+++..+. .+.+-++|+.|+||||+|+.+++..- ...|+|...|... +....+.+ .+++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 3467899999999999997655 45778999999999999999998652 2356777666653 33445555 3445
Q ss_pred HHHhCCCcccCCcccccCccEEEEEeCC--CCccchhhhcccCCCCCCCeEEEEeeCchhhh-hhcCCCcceeeecCCCH
Q 040332 227 ADKLGLKFHEESEPGREEKKILVILDNI--WENLDLRVVGIPHGDDHRGCKILLTARSLDVL-SRKMDSQQNFAVGILKE 303 (1210)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~kr~LlvlDdv--~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~-~~~~~~~~~~~l~~L~~ 303 (1210)
.+.+..... .+++-++|+|++ .+...+..+...+.....++.+|++|.+.... .........+.+.+++.
T Consensus 82 ~~~~~~~p~-------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~ 154 (313)
T PRK05564 82 IEEVNKKPY-------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSK 154 (313)
T ss_pred HHHHhcCcc-------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCH
Confidence 554432111 233445555555 45567777777766656788888888764422 22233456899999999
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHH
Q 040332 304 VEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIV 342 (1210)
Q Consensus 304 ~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 342 (1210)
++....+.+...+. -.+.++.++..++|.|..+.
T Consensus 155 ~~~~~~l~~~~~~~-----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 155 EEIEKFISYKYNDI-----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 99988887664311 12336688899999886554
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.37 E-value=6.8e-06 Score=93.83 Aligned_cols=183 Identities=13% Similarity=0.066 Sum_probs=108.5
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEecCCcC------------
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD-QVVFAEVSQSQD------------ 218 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~------------ 218 (1210)
....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++..... .++ ..+.++++...+
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcch
Confidence 356788999999999999887776678899999999999999999876432 222 234444432110
Q ss_pred -------------HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCch
Q 040332 219 -------------IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTARSL 283 (1210)
Q Consensus 219 -------------~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTtR~~ 283 (1210)
..+.++.+......... ..+.+-+||+||+.... ....+...+......+++|+||...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRP------LSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCC------CCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 01112222221110000 01334589999997552 2333333332223456777777543
Q ss_pred h-hhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHH
Q 040332 284 D-VLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIV 342 (1210)
Q Consensus 284 ~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 342 (1210)
. +..........+++.+++.++..+.+.+.+...... --.+..+.+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 2 222112334578999999999999988876422211 124567788888888654443
No 56
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.37 E-value=1.2e-05 Score=100.75 Aligned_cols=253 Identities=16% Similarity=0.175 Sum_probs=153.5
Q ss_pred ccccHHHHHHHHHHhC---CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEEEEecCCcCH---HHHHHHHHH
Q 040332 156 FESRMPTLRSILSALE---DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD-KIFDQVVFAEVSQSQDI---RKIQGEIAD 228 (1210)
Q Consensus 156 ~~gr~~~~~~l~~~l~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~---~~~~~~i~~ 228 (1210)
++||+.+++.|...+. .+...++.+.|..|+|||+|+++|......+ ..|=...+-........ ...+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 5799999999998886 5667899999999999999999999987644 11111111111122111 122233333
Q ss_pred Hh-------------------CCCcccC-----------------Cc------ccc--------------cCccEEEEEe
Q 040332 229 KL-------------------GLKFHEE-----------------SE------PGR--------------EEKKILVILD 252 (1210)
Q Consensus 229 ~l-------------------~~~~~~~-----------------~~------~~~--------------~~kr~LlvlD 252 (1210)
++ +...... .+ ..+ +.|+..+|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 2111000 00 000 6779999999
Q ss_pred CCCCcc--ch---hhhcccCC---CCCCCeEEEEeeCch-hhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchH
Q 040332 253 NIWENL--DL---RVVGIPHG---DDHRGCKILLTARSL-DVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEF 323 (1210)
Q Consensus 253 dv~~~~--~~---~~~~~~~~---~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~ 323 (1210)
|+.-.+ .. +.+..... ...+..-.+.|.+.. ........+...+.|.||+..+...+.....+... ...
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--~~~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--LLP 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--ccc
Confidence 994221 11 11111111 000111233333332 11122234456899999999999999999887422 223
Q ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHcC------CChHHHHHHHHHhcCCCCCCccccchhHHHHHHhhhcCCCccchhh
Q 040332 324 QLVAREVEKECAGLPVSIVTVARALRNN------KSLFDWKDALEQLRRPPLKNFMNIQPNAHKAIKLSYDNLGGEELKN 397 (1210)
Q Consensus 324 ~~~~~~i~~~c~glPlai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~ 397 (1210)
.+....|.++..|.|+=+.-+-..+..+ .+...|+.=..++... +..+.+...+..-.+.||. ..++
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~------~~~~~vv~~l~~rl~kL~~-~t~~ 312 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL------ATTDAVVEFLAARLQKLPG-TTRE 312 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc------hhhHHHHHHHHHHHhcCCH-HHHH
Confidence 4567899999999999999999888752 3445555433332211 1123366678889999998 4688
Q ss_pred hHhhhccC-ccccHHHHHHHH
Q 040332 398 VFLLIGYT-VIESIDDLLMYG 417 (1210)
Q Consensus 398 cfl~~s~f-p~~~~~~Li~~w 417 (1210)
.+-..|++ +.|+.+.|...|
T Consensus 313 Vl~~AA~iG~~F~l~~La~l~ 333 (849)
T COG3899 313 VLKAAACIGNRFDLDTLAALA 333 (849)
T ss_pred HHHHHHHhCccCCHHHHHHHH
Confidence 88888888 478877777666
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.36 E-value=3.8e-06 Score=89.65 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=103.1
Q ss_pred ccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccC
Q 040332 158 SRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEE 237 (1210)
Q Consensus 158 gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 237 (1210)
+.+..++.+..++.......+.|+|..|+|||++|+.+++..... ....++++++.-... ..++...+
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~---~~~~~~~~------- 88 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQA---DPEVLEGL------- 88 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHh---HHHHHhhc-------
Confidence 355677788877666667899999999999999999999886532 345566765443211 11222211
Q ss_pred CcccccCccEEEEEeCCCCcc---ch-hhhcccCCC-CCCCeEEEEeeCchhhh--------hhcCCCcceeeecCCCHH
Q 040332 238 SEPGREEKKILVILDNIWENL---DL-RVVGIPHGD-DHRGCKILLTARSLDVL--------SRKMDSQQNFAVGILKEV 304 (1210)
Q Consensus 238 ~~~~~~~kr~LlvlDdv~~~~---~~-~~~~~~~~~-~~~gs~iivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ 304 (1210)
. +.-+||+||++... .| +.+...+.. ...+.+||+||+..... .........+++.+++.+
T Consensus 89 -----~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~ 162 (226)
T TIGR03420 89 -----E-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDE 162 (226)
T ss_pred -----c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHH
Confidence 1 12389999998653 33 233322211 12234788888753211 011222357899999999
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHH
Q 040332 305 EAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARAL 348 (1210)
Q Consensus 305 ~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 348 (1210)
+...++...+.... .+--.+..+.|++.+.|.|..+..+...+
T Consensus 163 e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 163 EKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99998877553111 11123455677777888877666554433
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=5.9e-08 Score=104.24 Aligned_cols=136 Identities=20% Similarity=0.228 Sum_probs=90.3
Q ss_pred hhcCCcceEEEecCccccc---CCccccCCCCCcEEEecCccCCCCCC---CCCCCCCcEEEeecCCCc--ccCcccCCC
Q 040332 546 FERMIQVRVINLSYVDLLS---LPSSLVLLSNLRTLSLYYCKLLDISG---IGDLKKLEFLCLRGCDIR--QLPIEVGEL 617 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~---lp~~i~~l~~L~~L~L~~~~~~~~~~---i~~L~~L~~L~l~~~~l~--~lp~~i~~l 617 (1210)
...+.++|.|||++|-+.. +-+-...|++|+.|+|+.|++..|.+ -..+.+|+.|.++.|.++ .+-.-.-.+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4667888888888886653 33445678889999999888776322 346788888888888876 222233456
Q ss_pred CCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCC
Q 040332 618 ICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC 688 (1210)
Q Consensus 618 ~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 688 (1210)
++|..|++..|..+...... ..-+..|++|++++|.+... .....++.++.|+.|.++.+.+.+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~------~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF------DQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred CcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc------ccccccccccchhhhhccccCcch
Confidence 78888888887432221111 24467788888888877432 233556677777777777666553
No 59
>PLN03025 replication factor C subunit; Provisional
Probab=98.35 E-value=5.4e-06 Score=92.88 Aligned_cols=181 Identities=12% Similarity=0.043 Sum_probs=108.8
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEecCCcCHHHHHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD-QVVFAEVSQSQDIRKIQGEIADK 229 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~ 229 (1210)
....+++|.++.++.+.+++..++.+.+-++|++|+||||+|+.+++..... .|. .++-+..+...... ..+++.+.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHHH
Confidence 3456788999999988888877777778899999999999999999886322 232 23333334433333 33333333
Q ss_pred hCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCch-hhhhhcCCCcceeeecCCCHHHH
Q 040332 230 LGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTARSL-DVLSRKMDSQQNFAVGILKEVEA 306 (1210)
Q Consensus 230 l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~ 306 (1210)
+....... ..++.-++|+|+++... ....+...+-.....+++++++... .+..........+++++++.++.
T Consensus 88 ~~~~~~~~----~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l 163 (319)
T PLN03025 88 FAQKKVTL----PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI 163 (319)
T ss_pred HHhccccC----CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHH
Confidence 21110000 02456689999998652 2233332222223456677766442 22111122235789999999999
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 307 WSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 307 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
.+.+.+.+......- -.+....|++.++|-.
T Consensus 164 ~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 164 LGRLMKVVEAEKVPY-VPEGLEAIIFTADGDM 194 (319)
T ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCH
Confidence 998888774322111 1345678888888865
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=7.9e-06 Score=95.50 Aligned_cols=183 Identities=13% Similarity=0.138 Sum_probs=118.2
Q ss_pred cCcccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSD-------------------KIFDQVVF 210 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 210 (1210)
....+++|.+...+.+.+++..++ ...+-++|+.|+||||+|+.+++..... ..|..++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 356788999999999999998665 4677999999999999999998875321 12333455
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCc-hhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARS-LDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~-~~v~~ 287 (1210)
+..+....+..+ +++++....... .+++-++|+|+|... ..+..+...+-....+.++|++|.+ ..+..
T Consensus 92 IDAAs~~~VddI-Reli~~~~y~P~-------~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 92 IDAASRTKVEDT-RELLDNVPYAPT-------QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred ecccccCCHHHH-HHHHHHHhhhhh-------cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 555544444443 445444321111 355668999999865 3455554444333345667766654 33332
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIV 342 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 342 (1210)
........+++++++.++..+.+.+.+...... --.+....|++.++|.+-.+.
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 223455789999999999999988877432211 123456788999998764443
No 61
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1e-05 Score=94.88 Aligned_cols=189 Identities=12% Similarity=0.155 Sum_probs=118.3
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD-------------------KIFDQVVF 210 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 210 (1210)
....+++|.+..++.+...+..++. ..+-++|+.|+||||+|+.+++..... ..|...++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3566788999999999999876554 457899999999999999999865321 12334555
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE-EeeCchhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKIL-LTARSLDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTtR~~~v~~ 287 (1210)
+.......+.++ +++.+.+.... ..+++-++|+|++... ..++.+...+-.....+.+| +||....+..
T Consensus 93 idaas~~gvd~i-r~ii~~~~~~p-------~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~ 164 (546)
T PRK14957 93 IDAASRTGVEET-KEILDNIQYMP-------SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPV 164 (546)
T ss_pred eecccccCHHHH-HHHHHHHHhhh-------hcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhh
Confidence 554344444332 44444332110 1456679999999754 34555554444333455544 5655554543
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc-hHHHHHHHHH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP-VSIVTVARAL 348 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l 348 (1210)
........+++.+++.++..+.+.+.+..... .--.+....|++.++|.+ -|+..+-.+.
T Consensus 165 tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 165 TILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred hHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33344578999999999988888776542221 122345577889998855 4555554443
No 62
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.29 E-value=1.1e-05 Score=95.46 Aligned_cols=195 Identities=17% Similarity=0.187 Sum_probs=116.2
Q ss_pred ccccccHHHHHHHHHHhC----C-CCceEEEEEcCCCCcHHHHHHHHHHHhhcc---CCCC--eEEEEEecCCcCHHHHH
Q 040332 154 EAFESRMPTLRSILSALE----D-PDVNMLGIYGMGGIGKTMLAEEVARKIKSD---KIFD--QVVFAEVSQSQDIRKIQ 223 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~~~ 223 (1210)
..+.||++++++|...|. . ....++.|+|.+|.|||+.++.|.+..... ...+ .+++|.+..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 567899999999988876 2 233578899999999999999999876421 1222 25677776667888888
Q ss_pred HHHHHHhCCCcccCCcc-cc------------cCccEEEEEeCCCCcc--chhhhcccCC-CCCCCeEEEE--eeCchhh
Q 040332 224 GEIADKLGLKFHEESEP-GR------------EEKKILVILDNIWENL--DLRVVGIPHG-DDHRGCKILL--TARSLDV 285 (1210)
Q Consensus 224 ~~i~~~l~~~~~~~~~~-~~------------~~kr~LlvlDdv~~~~--~~~~~~~~~~-~~~~gs~iiv--TtR~~~v 285 (1210)
..|+.++.......... .. .+...+||||+|+... .-+.+...+. ....+++|+| +|.....
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 99998884332211110 00 2234589999998542 1111111111 1123455444 3432221
Q ss_pred hh----h---cCCCcceeeecCCCHHHHHHHHHHHhCC---CCCCchHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 040332 286 LS----R---KMDSQQNFAVGILKEVEAWSLFKKMAGD---YIEGSEFQLVAREVEKECAGLPVSIVTVARALR 349 (1210)
Q Consensus 286 ~~----~---~~~~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 349 (1210)
.. . .++ ...+..+|.+.++-.+++..++.. ..++..++-+|+.++..-|-.-.||.++-.+..
T Consensus 915 perLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 915 PERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred chhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 11 1 111 224677999999999999998852 223333444455444444556667766655554
No 63
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.1e-05 Score=91.49 Aligned_cols=188 Identities=15% Similarity=0.164 Sum_probs=116.0
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDK-------------------IFDQVVFA 211 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv 211 (1210)
...+++|.+.....+...+..+.. ..+-++|++|+||||+|+.+++...... .+..++.+
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 466789999988888888876665 5688999999999999999998754211 01123444
Q ss_pred EecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE-eeCchhhhhh
Q 040332 212 EVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL-TARSLDVLSR 288 (1210)
Q Consensus 212 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TtR~~~v~~~ 288 (1210)
..+.......+ ++|.+...... ..+++-++|+|+++.. ...+.+...+........+|+ ||....+...
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~~p-------~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~ 163 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGYRP-------MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPT 163 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhhCh-------hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHH
Confidence 54433444443 34544432111 1345679999999754 344444444433233344444 4433444433
Q ss_pred cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhC-CcchHHHHHHHHH
Q 040332 289 KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECA-GLPVSIVTVARAL 348 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~-glPlai~~~~~~l 348 (1210)
.......+++.+++.++....+.+.+..... .--.+....|++.++ +++.|+..+-.+.
T Consensus 164 L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 164 IISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445568999999999998888887742211 111345677888775 4567777666544
No 64
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2e-05 Score=92.51 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=118.3
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccCCC------------------CeEEEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDKIF------------------DQVVFAE 212 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F------------------~~~~wv~ 212 (1210)
...+++|.+...+.+..++..+.. ..+.++|++|+||||+|+.+++.......+ ..+.++.
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 456788999999999888876654 466999999999999999999887532222 1244454
Q ss_pred ecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEee-Cchhhhhhc
Q 040332 213 VSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTA-RSLDVLSRK 289 (1210)
Q Consensus 213 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTt-R~~~v~~~~ 289 (1210)
.+....+.. .+++.+.+.... ..+++-++|+|+++.. ..++.+...+........+|++| +...+....
T Consensus 92 ~~~~~~vd~-iR~l~~~~~~~p-------~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 92 AASNNSVED-VRDLREKVLLAP-------LRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred ccccCCHHH-HHHHHHHHhhcc-------ccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 443333332 344444432211 0345668999999855 34666655554433455555544 444443322
Q ss_pred CCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch-HHHHHHHHH
Q 040332 290 MDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV-SIVTVARAL 348 (1210)
Q Consensus 290 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~l 348 (1210)
......+++.+++.++..+.+.+.+...... --.+....|++.++|.+- |+..+-.++
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3445689999999999999998877422211 123467889999999874 433333333
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.6e-05 Score=92.80 Aligned_cols=180 Identities=11% Similarity=0.145 Sum_probs=116.3
Q ss_pred CcccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhccCC-----------------------CCe
Q 040332 152 DYEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSDKI-----------------------FDQ 207 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-----------------------F~~ 207 (1210)
...+++|.+..+..+...+..++ .+.+-++|+.|+||||+|+.+++....... ...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 46678899999998888776555 368889999999999999999987642211 112
Q ss_pred EEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE-EeeCchh
Q 040332 208 VVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKIL-LTARSLD 284 (1210)
Q Consensus 208 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTtR~~~ 284 (1210)
++.+.......+.++ +++.+..... ...+++-++|+|+++.. ..|+.+...+......+.+| +||+...
T Consensus 99 v~eidaas~~~vd~I-r~iie~a~~~-------P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 99 IIEIDAASKTSVDDI-RRIIESAEYK-------PLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred EEEeeccCCCCHHHH-HHHHHHHHhc-------cccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 334444444444443 3344433111 01456778999999875 45666655554444455655 5556556
Q ss_pred hhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchH
Q 040332 285 VLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVS 340 (1210)
Q Consensus 285 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 340 (1210)
+..........+++.+++.++..+.+.+.+....... -.+....|++.++|.+--
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARD 225 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 5443334456899999999999999998885322211 134556788999886643
No 66
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.27 E-value=1.2e-06 Score=95.75 Aligned_cols=91 Identities=15% Similarity=0.201 Sum_probs=65.2
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc--CHHHHHHHHHHHhCCCcccCCcccc
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ--DIRKIQGEIADKLGLKFHEESEPGR 242 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~ 242 (1210)
+++++. =+......|+|++|+||||||+++|+..... +|+.++||.+++.. .+.++++.|...+-....+.....+
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 445444 2455788999999999999999999998865 89999999998876 6677777775322111111111111
Q ss_pred ----------------cCccEEEEEeCCCCc
Q 040332 243 ----------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 243 ----------------~~kr~LlvlDdv~~~ 257 (1210)
.+++.+|++|++..-
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 689999999998654
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=7.7e-06 Score=93.07 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=113.8
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCeEEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDKI-------------------FDQVVF 210 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 210 (1210)
....+++|.+..+..+..++..++. ..+.++|+.|+||||+|+.+++....... ...++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviE 94 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLE 94 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcccee
Confidence 3567889999999999999887765 46899999999999999999987643210 001222
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeE-EEEeeCchhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCK-ILLTARSLDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~-iivTtR~~~v~~ 287 (1210)
+.......+.. .+++.+.+.... ..+++-++|+|++... +.++.+...+-....... |+.||....+..
T Consensus 95 Idaas~~gVd~-IReL~e~l~~~p-------~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 95 IDAASNRGIEN-IRELRDNVKFAP-------MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred echhhcccHHH-HHHHHHHHHhhh-------hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 22222222222 234444332111 1355668999999865 456666544433223444 445666566644
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV 339 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 339 (1210)
........|.+.+++.++..+.+.+.+...... --.+....|++.++|.+-
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~-~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ-YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCChHH
Confidence 434455689999999999988888876432211 124466889999999873
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=6.1e-07 Score=104.86 Aligned_cols=178 Identities=30% Similarity=0.395 Sum_probs=136.2
Q ss_pred hcCCcceEEEecCcccccCCccccCCC-CCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEe
Q 040332 547 ERMIQVRVINLSYVDLLSLPSSLVLLS-NLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLD 624 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 624 (1210)
..++.+..|++.++.+.++|..+..+. +|+.|++++|.+.. |..++.+++|+.|++++|.+..+|...+.+++|+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 445789999999999999999888885 99999999999998 6789999999999999999999998888999999999
Q ss_pred cCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEE
Q 040332 625 LRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRIL 704 (1210)
Q Consensus 625 l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~ 704 (1210)
+++| .+..+|..+ +.+..|++|.+.+|.. ...+..+..+.++..|.+..|.+..++..
T Consensus 193 ls~N-~i~~l~~~~-~~~~~L~~l~~~~N~~--------~~~~~~~~~~~~l~~l~l~~n~~~~~~~~------------ 250 (394)
T COG4886 193 LSGN-KISDLPPEI-ELLSALEELDLSNNSI--------IELLSSLSNLKNLSGLELSNNKLEDLPES------------ 250 (394)
T ss_pred ccCC-ccccCchhh-hhhhhhhhhhhcCCcc--------eecchhhhhcccccccccCCceeeeccch------------
Confidence 9998 899999863 6777899999998843 24556677777777777776665543221
Q ss_pred EcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCccccc
Q 040332 705 IGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHD 782 (1210)
Q Consensus 705 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 782 (1210)
...+++++.|++++. ...++.. + ....+++.|+++++.....
T Consensus 251 ------------------------------~~~l~~l~~L~~s~n---~i~~i~~-~--~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 251 ------------------------------IGNLSNLETLDLSNN---QISSISS-L--GSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ------------------------------hccccccceeccccc---ccccccc-c--cccCccCEEeccCcccccc
Confidence 112445666666663 4444433 2 2368888898888765443
No 69
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=1.7e-06 Score=91.28 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=62.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC--cCHHHHHHHH-----HHHhCCCcccCCccc----
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS--QDIRKIQGEI-----ADKLGLKFHEESEPG---- 241 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~---- 241 (1210)
.....++|+|.+|+|||||++++|++.... +|+.++|+.+.+. .++.++++.+ +.+++..........
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 455789999999999999999999998765 8999999997766 7889999988 333332110000000
Q ss_pred -------ccCccEEEEEeCCCCc
Q 040332 242 -------REEKKILVILDNIWEN 257 (1210)
Q Consensus 242 -------~~~kr~LlvlDdv~~~ 257 (1210)
..+++.++++|++..-
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 0689999999999654
No 70
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.22 E-value=6.7e-06 Score=81.20 Aligned_cols=123 Identities=18% Similarity=0.116 Sum_probs=75.0
Q ss_pred cccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCccc
Q 040332 157 ESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHE 236 (1210)
Q Consensus 157 ~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 236 (1210)
.|++..+..+...+.....+.+.|+|.+|+||||+|+.+++..... -..++++..++..........+... ....
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~ 75 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF---LVRL 75 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh---hHhH
Confidence 3788899999998877677899999999999999999999987522 2346677665544332222111100 0000
Q ss_pred CCcccccCccEEEEEeCCCCc-----cchhhhcccCCCC---CCCeEEEEeeCchh
Q 040332 237 ESEPGREEKKILVILDNIWEN-----LDLRVVGIPHGDD---HRGCKILLTARSLD 284 (1210)
Q Consensus 237 ~~~~~~~~kr~LlvlDdv~~~-----~~~~~~~~~~~~~---~~gs~iivTtR~~~ 284 (1210)
........++.++|+||++.. ..+..+....... ..+..||+||....
T Consensus 76 ~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000001456789999999853 2222222222211 35788888888643
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.21 E-value=3.6e-05 Score=87.15 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=108.5
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe--cCCcCHHHHHHHHHHH
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEV--SQSQDIRKIQGEIADK 229 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~ 229 (1210)
...+++|+++.++.+..++..+..+.+.++|.+|+||||+|+.+++...... ++. .++.+ +.......+...+ ..
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~~~~~~~i-~~ 91 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGIDVIRNKI-KE 91 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccchHHHHHHH-HH
Confidence 4566889999999999999877777789999999999999999998864321 221 22332 3322222222222 22
Q ss_pred hCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCch-hhhhhcCCCcceeeecCCCHHHH
Q 040332 230 LGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSL-DVLSRKMDSQQNFAVGILKEVEA 306 (1210)
Q Consensus 230 l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~ 306 (1210)
+..... . ....+-++++|+++.. .....+...+......+++|+++... .+..........+++.+++.++.
T Consensus 92 ~~~~~~----~-~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei 166 (319)
T PRK00440 92 FARTAP----V-GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAV 166 (319)
T ss_pred HHhcCC----C-CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHH
Confidence 211100 0 0133568999998754 22334433333333456677766432 22111112234689999999999
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHH
Q 040332 307 WSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIV 342 (1210)
Q Consensus 307 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 342 (1210)
...+.+.+...... --.+....+++.++|.+--+.
T Consensus 167 ~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 167 AERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 88888877522211 124467788899998775533
No 72
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=5.6e-05 Score=84.58 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=112.1
Q ss_pred ccCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccCC--C----------Ce---------
Q 040332 150 SKDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDKI--F----------DQ--------- 207 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~~--F----------~~--------- 207 (1210)
+.....++|.++..+.+...+..+.. ..+-|+|..|+||||+|..+++..-.... + .+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQG 98 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcC
Confidence 44567789999999999999886664 46899999999999999999987643100 1 00
Q ss_pred ----EEEEEec--C-------CcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCC
Q 040332 208 ----VVFAEVS--Q-------SQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHR 272 (1210)
Q Consensus 208 ----~~wv~vs--~-------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~ 272 (1210)
..++... . ...+. ..+++.+.+..... .+++-++|+|+++.. ...+.+...+-....
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd-~iR~l~~~l~~~~~-------~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVD-EIRRVGHFLSQTSG-------DGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred CCCCEEEeecccccccccccccCCHH-HHHHHHHHhhhccc-------cCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 1122110 0 01112 22334433322111 456778999999865 233333333322222
Q ss_pred C-eEEEEeeCchhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 273 G-CKILLTARSLDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 273 g-s~iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
+ .-|++|++...+..........+.+.+++.++..+.+........ -..+....|++.++|.|.....+
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 345556555444433334456899999999999999987432211 11345678999999999866543
No 73
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.19 E-value=1.2e-05 Score=98.08 Aligned_cols=169 Identities=19% Similarity=0.227 Sum_probs=99.9
Q ss_pred cCcccccccHHHHH---HHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC--CcCHHHHHHH
Q 040332 151 KDYEAFESRMPTLR---SILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ--SQDIRKIQGE 225 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~ 225 (1210)
....+|+|++..+. .+...+..+....+.++|++|+||||+|+.+++.... +|.. +..+. ..+....+..
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~~---lna~~~~i~dir~~i~~ 99 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFSS---LNAVLAGVKDLRAEVDR 99 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--ccee---ehhhhhhhHHHHHHHHH
Confidence 34567889988774 4566666677778899999999999999999987653 2421 21111 1112222222
Q ss_pred HHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE--eeCchh--hhhhcCCCcceeeec
Q 040332 226 IADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL--TARSLD--VLSRKMDSQQNFAVG 299 (1210)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv--TtR~~~--v~~~~~~~~~~~~l~ 299 (1210)
+...+. ..+++.++|+||++.. .+++.+...+ ..|..++| ||.+.. +..........+.++
T Consensus 100 a~~~l~----------~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~ 166 (725)
T PRK13341 100 AKERLE----------RHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLK 166 (725)
T ss_pred HHHHhh----------hcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecC
Confidence 211111 0245779999999754 4455554332 23555555 344421 222222334579999
Q ss_pred CCCHHHHHHHHHHHhCC------CCCCchHHHHHHHHHHHhCCc
Q 040332 300 ILKEVEAWSLFKKMAGD------YIEGSEFQLVAREVEKECAGL 337 (1210)
Q Consensus 300 ~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~i~~~c~gl 337 (1210)
+++.++...++.+.+.. ...-.--.+....|++.+.|.
T Consensus 167 pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 167 SLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 99999999999877631 111111234557777777775
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=1.6e-05 Score=94.59 Aligned_cols=184 Identities=11% Similarity=0.134 Sum_probs=116.3
Q ss_pred cCcccccccHHHHHHHHHHhCCCCce-EEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKIKSDK-------------------IFDQVVF 210 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 210 (1210)
..+.+++|.+..++.+.+.+..++.. .+-++|..|+||||+|+.+++...... .|...++
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 35678899999999999988876654 468999999999999999988764321 1222344
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeE-EEEeeCchhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCK-ILLTARSLDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~-iivTtR~~~v~~ 287 (1210)
+..+....+.+ ++++.+.+..... .+++-++|+|+++.. ..++.+...+-.-....+ |++||....+..
T Consensus 93 idaas~~~Vdd-iR~li~~~~~~p~-------~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 93 IDAASRTKVED-TRELLDNVQYAPA-------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred ecccccCCHHH-HHHHHHHHHhhhh-------cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 44433334443 3455554422111 456778999999865 344554333322223444 555565555543
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVT 343 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 343 (1210)
........|.+++++.++..+.+.+.+..... ..-.+....|++.++|.+-.+..
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33344678999999999999998877632211 11234567899999997754433
No 75
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=2.5e-05 Score=91.55 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=113.4
Q ss_pred cCcccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCeEEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSDKI-------------------FDQVVF 210 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 210 (1210)
....+++|++..++.+.+++..++ .+.+-++|+.|+||||+|+.+++....... ....++
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Diie 92 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVE 92 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEE
Confidence 356788899999999999987554 457889999999999999999987632111 112345
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE-EeeCchhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKIL-LTARSLDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTtR~~~v~~ 287 (1210)
+..+....+..+ +++.+.+..... .+++-++|+|+++.. ..+..+...+-.....+.+| +|+....+..
T Consensus 93 Idaas~igVd~I-ReIi~~~~~~P~-------~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 93 LDAASNNGVDEI-RNIIDNINYLPT-------TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred eccccccCHHHH-HHHHHHHHhchh-------hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 544333333333 444444321110 223446999998764 44555544433322344444 4555444433
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc-hHHHHHHH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP-VSIVTVAR 346 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~ 346 (1210)
........+++.+++.++....+.+.+...... --.+.+..|++.++|.+ .|+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 223345689999999999998888776422111 11345678889998855 44444443
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.8e-07 Score=95.28 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=28.1
Q ss_pred CCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeec
Q 040332 619 CLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRI 683 (1210)
Q Consensus 619 ~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 683 (1210)
.||+||++.......--.++++.+.+|+.|.+.++.+ ++.....+++=.+|+.|++++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-------dD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-------DDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-------CcHHHHHHhccccceeecccc
Confidence 3555555554211122223455666666666665554 223334445555555555553
No 77
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=4.1e-05 Score=86.86 Aligned_cols=177 Identities=13% Similarity=0.095 Sum_probs=110.0
Q ss_pred cccccccHHHHHHHHHHhCCCC----------ceEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------C
Q 040332 153 YEAFESRMPTLRSILSALEDPD----------VNMLGIYGMGGIGKTMLAEEVARKIKSD-------------------K 203 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~ 203 (1210)
...++|.+..++.+.+++..+. .+.+-++|+.|+||||+|..+++..-.. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 4567899999999999887543 4668899999999999999998764321 1
Q ss_pred CCCeEEEEEec-CCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEee
Q 040332 204 IFDQVVFAEVS-QSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTA 280 (1210)
Q Consensus 204 ~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTt 280 (1210)
|.| +.++... ....+.+ ++++.+.+..... .+++-++|+|+++.. .....+...+-....+..+|++|
T Consensus 84 hpD-~~~i~~~~~~i~i~~-iR~l~~~~~~~p~-------~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 84 HPD-VRVVAPEGLSIGVDE-VRELVTIAARRPS-------TGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred CCC-EEEeccccccCCHHH-HHHHHHHHHhCcc-------cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 222 2333222 2233333 3455554432211 345557888999865 33344433333323345555555
Q ss_pred Cc-hhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 281 RS-LDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 281 R~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
.+ ..+..........+.+.+++.++..+.+.+..+ . + .+.+..+++.++|.|.....+
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 44 444433334457899999999999988875432 1 1 345678899999998755443
No 78
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.17 E-value=1.5e-05 Score=80.35 Aligned_cols=177 Identities=17% Similarity=0.150 Sum_probs=95.8
Q ss_pred ccCcccccccHHHHHHHHHHhC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHH
Q 040332 150 SKDYEAFESRMPTLRSILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQG 224 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 224 (1210)
+....+|+|.+..++.+.-++. ......+-+||++|+||||||.-+++..... |. +.+...-....++ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGDL-A 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH-H
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHHH-H
Confidence 4467889999998887654443 3456789999999999999999999998754 42 2322211122222 2
Q ss_pred HHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccC--------CCCCCC-----------eEEEEeeCch
Q 040332 225 EIADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPH--------GDDHRG-----------CKILLTARSL 283 (1210)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~--------~~~~~g-----------s~iivTtR~~ 283 (1210)
.++..+ +++-+|.+|.+..-. +-+.+..+. ...+.+ +-|=.|||..
T Consensus 94 ~il~~l-------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g 160 (233)
T PF05496_consen 94 AILTNL-------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG 160 (233)
T ss_dssp HHHHT---------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC
T ss_pred HHHHhc-------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc
Confidence 333333 235578889997542 111111111 011111 1233588876
Q ss_pred hhhhhcCCCcc-eeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHH
Q 040332 284 DVLSRKMDSQQ-NFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVAR 346 (1210)
Q Consensus 284 ~v~~~~~~~~~-~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 346 (1210)
.+.....+... ..+++..+.+|-.+...+.+..-. -+--++.+.+|++++.|-|--+.-+-.
T Consensus 161 ~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 161 LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp CTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred ccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 65433222223 458999999999999988875221 222356789999999999964444333
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.1e-05 Score=89.45 Aligned_cols=181 Identities=12% Similarity=0.100 Sum_probs=116.3
Q ss_pred cCcccccccHHHHHHHHHHhCCCCce-EEEEEcCCCCcHHHHHHHHHHHhhc-------------------cCCCCeEEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKIKS-------------------DKIFDQVVF 210 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~w 210 (1210)
....+++|.+...+.+.+.+..++.. .+-++|+.|+||||+|+.+++..-. ...+..++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 35678899999999888888766654 7899999999999999999874311 012333566
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE-eeCchhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL-TARSLDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TtR~~~v~~ 287 (1210)
++.+....+.++ ++|.+...... ..+++-++|+|++... ..++.+...+-.-.+.+++|+ ||..+.+..
T Consensus 90 idaas~~~vddI-R~Iie~~~~~P-------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~ 161 (491)
T PRK14964 90 IDAASNTSVDDI-KVILENSCYLP-------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPV 161 (491)
T ss_pred EecccCCCHHHH-HHHHHHHHhcc-------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHH
Confidence 666655555553 34444432111 0345668999999754 334554444433334566555 444455543
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVS 340 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 340 (1210)
........+++.+++.++..+.+.+.+...... --.+....|++.++|.+-.
T Consensus 162 tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 162 TIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred HHHHhheeeecccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 334455689999999999999998877532221 1234567889999887643
No 80
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=3.2e-06 Score=103.18 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=72.2
Q ss_pred cceEEEecCcccc-cCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCc-ccCcccCCCCCCCEEecC
Q 040332 551 QVRVINLSYVDLL-SLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIR-QLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~ 626 (1210)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+.. |..++.+.+|+.|++++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3667777777776 567777777777777777777765 556777777777777777776 567777777777777777
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCC
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNS 654 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~ 654 (1210)
+|...+.+|..+-..+.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 7755556676542223455666666554
No 81
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=5.3e-05 Score=85.25 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=114.1
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------------
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDKI------------------------- 204 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~~------------------------- 204 (1210)
.....++|.+...+.+.+.+..++. ..+-++|+.|+||+|+|..+++..-.+..
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i 95 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI 95 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH
Confidence 3566788999999999999887765 46889999999999999999987632211
Q ss_pred ----CCeEEEEEe--cCC-------cCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCC
Q 040332 205 ----FDQVVFAEV--SQS-------QDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGD 269 (1210)
Q Consensus 205 ----F~~~~wv~v--s~~-------~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~ 269 (1210)
.....||.- ... ..+.. .+++.+.+..... .+++-++|+||++.. .....+...+-.
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~-------~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAA-------EGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcc-------cCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 111233321 011 11222 3444444433221 456778999999765 334444433333
Q ss_pred CCCCeEEEEeeCch-hhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 270 DHRGCKILLTARSL-DVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 270 ~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
-..++.+|++|.+. .+..........+.+.+++.++..+.+.+..... + ......+++.++|.|..+..+
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 23455566666554 4433334456789999999999999998765321 1 112267899999999866554
No 82
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.15 E-value=5.1e-05 Score=77.95 Aligned_cols=160 Identities=19% Similarity=0.160 Sum_probs=98.7
Q ss_pred HHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc--------------------CCCCeEEEEEec-CCcCHHHH
Q 040332 165 SILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD--------------------KIFDQVVFAEVS-QSQDIRKI 222 (1210)
Q Consensus 165 ~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs-~~~~~~~~ 222 (1210)
.+.+.+..++. ..+-++|+.|+||||+|+.+.+..-.. .+.|. .++... ..... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 34455555554 678999999999999999999886432 22233 333322 22333 33
Q ss_pred HHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCch-hhhhhcCCCcceeeec
Q 040332 223 QGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSL-DVLSRKMDSQQNFAVG 299 (1210)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~ 299 (1210)
.+++.+.+..... .+.+-++|+|+++.. ..++.+...+......+.+|++|++. .+..........+.+.
T Consensus 81 i~~i~~~~~~~~~-------~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~ 153 (188)
T TIGR00678 81 VRELVEFLSRTPQ-------ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFP 153 (188)
T ss_pred HHHHHHHHccCcc-------cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCC
Confidence 3445555432111 345668999998764 34555554444434456666666543 3322222344689999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchH
Q 040332 300 ILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVS 340 (1210)
Q Consensus 300 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 340 (1210)
+++.++..+.+.+. + .+ .+.+..|++.++|.|..
T Consensus 154 ~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 154 PLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCccc
Confidence 99999998888776 2 11 35688999999998853
No 83
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.7e-05 Score=91.69 Aligned_cols=182 Identities=11% Similarity=0.160 Sum_probs=115.9
Q ss_pred cCcccccccHHHHHHHHHHhCCCCce-EEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKIKSD-------------------KIFDQVVF 210 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 210 (1210)
....+++|.+..++.+.+++..+... .+-++|+.|+||||+|+.+++..-.. ..|..++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 35678899999999999999876654 57899999999999999999876322 12333566
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE-eeCchhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL-TARSLDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TtR~~~v~~ 287 (1210)
+..+....+.++ +++.+.+..... .++.-++|+|+|+.. .....+...+-.....+++|+ ||....+..
T Consensus 93 idaas~~~v~~i-R~l~~~~~~~p~-------~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~ 164 (509)
T PRK14958 93 VDAASRTKVEDT-RELLDNIPYAPT-------KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPV 164 (509)
T ss_pred EcccccCCHHHH-HHHHHHHhhccc-------cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchH
Confidence 665555555554 456655432211 456678899999864 344544444333334565555 444444432
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSI 341 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 341 (1210)
........+++++++.++..+.+.+.+......- -.+....|++.++|.+--+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 165 TVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDA 217 (509)
T ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHH
Confidence 2233446789999999988777766654222111 1234567888888876433
No 84
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.14 E-value=7.4e-05 Score=85.94 Aligned_cols=184 Identities=12% Similarity=0.120 Sum_probs=114.5
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc--------------------CCCCeEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD--------------------KIFDQVVF 210 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~w 210 (1210)
....++|.+..++.+.+++..+.. +.+-++|++|+||||+|+.+.+..... .+++. ++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 456778999999999999876654 567899999999999999999875321 13443 44
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh-hhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLD-VLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~-v~~ 287 (1210)
+..+...... -.+++.+.+.... ..+++-++|+|+++.. ..+..+...+......+.+|++|.+.. +..
T Consensus 91 ~~~~~~~~~~-~~~~l~~~~~~~p-------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~ 162 (355)
T TIGR02397 91 IDAASNNGVD-DIREILDNVKYAP-------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPA 162 (355)
T ss_pred eeccccCCHH-HHHHHHHHHhcCc-------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHH
Confidence 4433222322 2344444432111 1344558889998654 345555444433334566666665433 322
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVA 345 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 345 (1210)
........+++.+++.++..+.+...+...... --.+.+..+++.++|.|-.+....
T Consensus 163 ~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 163 TILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHHH
Confidence 222334578899999999988888776422111 113567788999999886655444
No 85
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=4.4e-05 Score=90.88 Aligned_cols=183 Identities=9% Similarity=0.122 Sum_probs=116.1
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc------------------------CCC
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD------------------------KIF 205 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~------------------------~~F 205 (1210)
....+++|.+..+..|.+++..++. ..+-++|..|+||||+|+.+++..-.. ..+
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 3567888999999999999887665 566899999999999999997664321 112
Q ss_pred CeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE-EeeCc
Q 040332 206 DQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKIL-LTARS 282 (1210)
Q Consensus 206 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTtR~ 282 (1210)
..++++.......+.++ +++.+....... .++.-++|+|+|+.. ..++.+...+-.-....++| +||..
T Consensus 93 ~D~~eldaas~~~Vd~i-Reli~~~~~~p~-------~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 93 VDYTELDAASNRGVDEV-QQLLEQAVYKPV-------QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred CceeecCcccccCHHHH-HHHHHHHHhCcc-------cCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 23445544444444443 445554322111 345568899999865 45555554443333455555 45554
Q ss_pred hhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHH
Q 040332 283 LDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIV 342 (1210)
Q Consensus 283 ~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 342 (1210)
..+..........+++++++.++..+.+.+.+...... --.+....|++.++|.+--+.
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 55543334455789999999999999888876432211 123456788889988664443
No 86
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.12 E-value=4.3e-05 Score=81.20 Aligned_cols=165 Identities=15% Similarity=0.078 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCc
Q 040332 160 MPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESE 239 (1210)
Q Consensus 160 ~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 239 (1210)
...+..+.++......+.+.|+|+.|+|||+|++.+++....+ -..+.|+++...... ..++.+.+.
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~~---~~~~~~~~~-------- 96 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAWF---VPEVLEGME-------- 96 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhhh---hHHHHHHhh--------
Confidence 3345555555444555789999999999999999999876543 345667766542111 112222210
Q ss_pred ccccCccEEEEEeCCCCc---cchhh-hcccCCC-CCCC-eEEEEeeCchhhh--------hhcCCCcceeeecCCCHHH
Q 040332 240 PGREEKKILVILDNIWEN---LDLRV-VGIPHGD-DHRG-CKILLTARSLDVL--------SRKMDSQQNFAVGILKEVE 305 (1210)
Q Consensus 240 ~~~~~kr~LlvlDdv~~~---~~~~~-~~~~~~~-~~~g-s~iivTtR~~~v~--------~~~~~~~~~~~l~~L~~~~ 305 (1210)
+--++++||+... ..|+. +...+.. ...| .++|+||+...-. ...+....+++++++++++
T Consensus 97 -----~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 97 -----QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred -----hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 1137899999653 34532 1111111 1123 4799999864221 1124445689999999999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHH
Q 040332 306 AWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVT 343 (1210)
Q Consensus 306 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 343 (1210)
-.+.+.+++.... -.--+++..-|++.+.|..-++..
T Consensus 172 ~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 172 KLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHH
Confidence 9999888664221 112245667777777765544443
No 87
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.12 E-value=2.1e-06 Score=100.30 Aligned_cols=142 Identities=30% Similarity=0.385 Sum_probs=63.1
Q ss_pred cceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCC
Q 040332 551 QVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCS 629 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 629 (1210)
+|+.|++++|.+..+|..+..+++|+.|++++|++.. +...+.+.+|+.|++++|++..+|..++.+..|++|.+++|.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 4445555555555554444555555555555555544 333334455555555555555555444444445555554442
Q ss_pred CCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeE
Q 040332 630 KLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYR 702 (1210)
Q Consensus 630 ~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 702 (1210)
....+.. +.++.++..+.+.+|... ..+..++.+.+++.|+++.|.+..++....+.+++.+.
T Consensus 221 -~~~~~~~-~~~~~~l~~l~l~~n~~~--------~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~ 283 (394)
T COG4886 221 -IIELLSS-LSNLKNLSGLELSNNKLE--------DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELD 283 (394)
T ss_pred -ceecchh-hhhcccccccccCCceee--------eccchhccccccceeccccccccccccccccCccCEEe
Confidence 2222222 244444444444433321 11334444444444444444444444432333344433
No 88
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1.2e-06 Score=96.84 Aligned_cols=116 Identities=18% Similarity=0.303 Sum_probs=87.1
Q ss_pred cccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccccC
Q 040332 1063 SFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSG 1142 (1210)
Q Consensus 1063 ~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 1142 (1210)
.+..++.|+|++| +|+++| .-.++|++|.|++|++++.+|. ..+++|++|.+++|+++.++|.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~----------~LP~nLe~L~Ls~Cs~L~sLP~- 112 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLPG----------SIPEGLEKLTVCHCPEISGLPE- 112 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCCc----------hhhhhhhheEccCccccccccc-
Confidence 4688999999999 898884 2245799999999999988872 2357999999999999988874
Q ss_pred CccccCCcccEEeecc--CCCccccCCCCcC------------------CCceeEEEeccccccccccccchhHHHHHHH
Q 040332 1143 HCAFKFPSLERILVND--CPSMKIFSGGELS------------------TPKLLKVQLDEFNKELWTWERDLNTTIQTLY 1202 (1210)
Q Consensus 1143 ~~~~~~~sL~~L~i~~--C~~l~~lp~~~~~------------------~~~L~~l~i~~C~~~~~~~~~~lp~~l~~l~ 1202 (1210)
+|+.|++.. |..+..+|.++.. .++|+.|.+.+|..... ..++|.+++.|+
T Consensus 113 -------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L--P~~LP~SLk~L~ 183 (426)
T PRK15386 113 -------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIIL--PEKLPESLQSIT 183 (426)
T ss_pred -------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccC--cccccccCcEEE
Confidence 556666543 4456667755422 25899999999886642 256999998887
Q ss_pred Hh
Q 040332 1203 LK 1204 (1210)
Q Consensus 1203 ~~ 1204 (1210)
..
T Consensus 184 ls 185 (426)
T PRK15386 184 LH 185 (426)
T ss_pred ec
Confidence 53
No 89
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.12 E-value=2.3e-05 Score=81.27 Aligned_cols=186 Identities=19% Similarity=0.187 Sum_probs=120.6
Q ss_pred ccCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEE-EEEecCCcCHHHHHHHH--
Q 040332 150 SKDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVV-FAEVSQSQDIRKIQGEI-- 226 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i-- 226 (1210)
++...+++|.+.....+.+.+.....++...+|++|.|||+-|..++...-..+.|.+++ -.++|......-+-..+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 456778889999999999999887889999999999999999999998876666787643 45666554433221111
Q ss_pred HHHhCCCcccCCcccccCcc-EEEEEeCCCCc--cchhhhcccCCCCCCCeE-EEEeeCchhhhhhcCCCcceeeecCCC
Q 040332 227 ADKLGLKFHEESEPGREEKK-ILVILDNIWEN--LDLRVVGIPHGDDHRGCK-ILLTARSLDVLSRKMDSQQNFAVGILK 302 (1210)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~kr-~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~-iivTtR~~~v~~~~~~~~~~~~l~~L~ 302 (1210)
..++..... ......-+. -.+|||+++.. +.|.++...+......++ |+||+--..+..........|..++|.
T Consensus 112 fakl~~~~~--~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~ 189 (346)
T KOG0989|consen 112 FAKLTVLLK--RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLK 189 (346)
T ss_pred HHHHhhccc--cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcc
Confidence 111111111 000112233 46889999875 788888766665555666 445544333332223445578999999
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 303 EVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 303 ~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
+++...=+...+..+.-.-+ .+..+.|++.++|--
T Consensus 190 d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 190 DEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDL 224 (346)
T ss_pred hHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcH
Confidence 99999888888753332211 345678888888743
No 90
>PRK08727 hypothetical protein; Validated
Probab=98.12 E-value=3.6e-05 Score=81.59 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=98.7
Q ss_pred cccccccH-HHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhC
Q 040332 153 YEAFESRM-PTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLG 231 (1210)
Q Consensus 153 ~~~~~gr~-~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (1210)
.+.|++.. ..+..+...........+.|+|..|+|||.|++.+++....+ ...+.|+++.+.. ..+.++.+.+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~~~---~~~~~~~~~l- 91 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQAAA---GRLRDALEAL- 91 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHHhh---hhHHHHHHHH-
Confidence 44454443 334443333333344679999999999999999999886543 3356677654321 1112222222
Q ss_pred CCcccCCcccccCccEEEEEeCCCCcc---chhh-hcccCCC-CCCCeEEEEeeCchhhh--------hhcCCCcceeee
Q 040332 232 LKFHEESEPGREEKKILVILDNIWENL---DLRV-VGIPHGD-DHRGCKILLTARSLDVL--------SRKMDSQQNFAV 298 (1210)
Q Consensus 232 ~~~~~~~~~~~~~kr~LlvlDdv~~~~---~~~~-~~~~~~~-~~~gs~iivTtR~~~v~--------~~~~~~~~~~~l 298 (1210)
.+.-+||+||+.... .|+. +...+.. ..+|..||+|++...-. ...+.....+++
T Consensus 92 ------------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l 159 (233)
T PRK08727 92 ------------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGL 159 (233)
T ss_pred ------------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEe
Confidence 223489999997542 3332 2211111 12356799999852210 012333458999
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHH
Q 040332 299 GILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSI 341 (1210)
Q Consensus 299 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 341 (1210)
++++.++-.+++.+++.... -.--++...-|++.++|-.-.+
T Consensus 160 ~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 160 PVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 99999999999998774221 1122445677888887655444
No 91
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.11 E-value=4.6e-05 Score=92.26 Aligned_cols=196 Identities=14% Similarity=0.109 Sum_probs=109.2
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC---eEEEEEecCC---cCHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD---QVVFAEVSQS---QDIRKIQG 224 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~---~~~~~~~~ 224 (1210)
.....++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..+....+. ..-|+.+... .+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 34567889999999988888766677899999999999999999998765433331 2345544321 12222211
Q ss_pred HH---------------HHHhCCCcc----------------cCCcccc----------cCccEEEEEeCCCCc--cchh
Q 040332 225 EI---------------ADKLGLKFH----------------EESEPGR----------EEKKILVILDNIWEN--LDLR 261 (1210)
Q Consensus 225 ~i---------------~~~l~~~~~----------------~~~~~~~----------~~kr~LlvlDdv~~~--~~~~ 261 (1210)
.+ +...+.... +...... ..+++.++-|+.|.. ..|+
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 111111100 0000000 455566665544433 3466
Q ss_pred hhcccCCCCCCCeEEEE--eeCchhhh-hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 262 VVGIPHGDDHRGCKILL--TARSLDVL-SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 262 ~~~~~~~~~~~gs~iiv--TtR~~~v~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
.+...+..+.+...|++ ||++.... .........+.+.+++.+|.++++.+.+...... --.++.+.|.+....-+
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~gR 389 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEGR 389 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcHH
Confidence 66555555555555555 66654321 1112233467899999999999999887532111 11234445555544445
Q ss_pred hHHHHHHHH
Q 040332 339 VSIVTVARA 347 (1210)
Q Consensus 339 lai~~~~~~ 347 (1210)
-|+..++.+
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 566555544
No 92
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=2.9e-06 Score=68.47 Aligned_cols=56 Identities=29% Similarity=0.403 Sum_probs=33.0
Q ss_pred cceEEEecCcccccCCc-cccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCC
Q 040332 551 QVRVINLSYVDLLSLPS-SLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCD 606 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~ 606 (1210)
+|++|++++|.+..+|. .+..+++|++|++++|.+.. +..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666653 45556666666666666555 3445566666666665554
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=3e-05 Score=91.79 Aligned_cols=183 Identities=11% Similarity=0.141 Sum_probs=112.8
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD-------------------KIFDQVVF 210 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 210 (1210)
....+++|.+..+..|.+++..++. +.+-++|..|+||||+|+.+.+..... ..|..++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 3567889999999999999986664 568999999999999999998864321 11222244
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCc-hhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTARS-LDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTtR~-~~v~~ 287 (1210)
+..+....+. .++++++....... .+++-++|+|++.... ....+...+-.....+++|++|.+ ..+..
T Consensus 93 idaAs~~gVd-~IRelle~a~~~P~-------~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 93 IDAASNTGID-NIREVLENAQYAPT-------AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred EeccccCCHH-HHHHHHHHHHhhhh-------hCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 5444444433 33445443211100 3456689999997653 233343333222234566655544 33332
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIV 342 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 342 (1210)
...+....+.+.+++.++..+.+.+.+...... --.+....|++.++|.+--+.
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHHH
Confidence 223344578899999999999888777532211 123456789999988774433
No 94
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00013 Score=86.15 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=117.4
Q ss_pred CcccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCeEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSDK--------------------IFDQVVF 210 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~w 210 (1210)
...+++|.+..++.|.+.+..++ ...+-++|+.|+||||+|+.+++..-... |.| +++
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD-v~e 92 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD-VVE 92 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 45677899988888888887665 47788899999999999999998764321 111 345
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEee-Cchhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTA-RSLDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTt-R~~~v~~ 287 (1210)
+..+....+..+ +.+.+.+.... ..+++-++|+|++... ..++.+...+-.......+|++| ....+..
T Consensus 93 Id~a~~~~Id~i-R~L~~~~~~~p-------~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 93 IDGASNRGIDDA-KRLKEAIGYAP-------MEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred EecccccCHHHH-HHHHHHHHhhh-------hcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 543333333332 33433332111 1355678999999765 34455544443322345555544 4344443
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCc-chHHHHHHHHHH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGL-PVSIVTVARALR 349 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~~~l~ 349 (1210)
........+++++++.++..+.+.+.+..... .--.+.++.|++.++|. -.|+..+...+.
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 22334457899999999999888876642211 11234677888999885 477777766554
No 95
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00019 Score=80.53 Aligned_cols=191 Identities=16% Similarity=0.162 Sum_probs=119.6
Q ss_pred ccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhC
Q 040332 156 FESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLG 231 (1210)
Q Consensus 156 ~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (1210)
+.+|+++++++...|. .....-+.|+|.+|+|||+.++.|.+.......=..+++|.+-...+...++..|+++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7899999999988775 333444999999999999999999998865422222789999999999999999999997
Q ss_pred CCcccCCcccc-----------cCccEEEEEeCCCCccch--hhhcccCCCC-CCCeEEE--EeeCchhhhhh-------
Q 040332 232 LKFHEESEPGR-----------EEKKILVILDNIWENLDL--RVVGIPHGDD-HRGCKIL--LTARSLDVLSR------- 288 (1210)
Q Consensus 232 ~~~~~~~~~~~-----------~~kr~LlvlDdv~~~~~~--~~~~~~~~~~-~~gs~ii--vTtR~~~v~~~------- 288 (1210)
........... .++.+++|||+++....- +.+...+... ..+++|+ ..+.+..+...
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhh
Confidence 22221111111 689999999999754221 2222111111 1145443 34444332211
Q ss_pred cCCCcceeeecCCCHHHHHHHHHHHhC----CCCCCchHHHHHHHHHHHhC-CcchHHHHHHHH
Q 040332 289 KMDSQQNFAVGILKEVEAWSLFKKMAG----DYIEGSEFQLVAREVEKECA-GLPVSIVTVARA 347 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~~~~~~~lf~~~~~----~~~~~~~~~~~~~~i~~~c~-glPlai~~~~~~ 347 (1210)
..+ ...+..+|-+.+|-...+..++. ....++..-+.+..++..-+ -.-.||.++-.+
T Consensus 179 ~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 179 SLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred ccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 122 23478899999999999988873 22223333344444444444 444555554433
No 96
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=5.3e-05 Score=87.33 Aligned_cols=180 Identities=11% Similarity=0.087 Sum_probs=111.9
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEcCCCCcHHHHHHHHHHHhhccC---------------------------
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKIKSDK--------------------------- 203 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~gGiGKTtLa~~v~~~~~~~~--------------------------- 203 (1210)
...+++|.+..++.+.+++..++.. .+-++|+.|+||||+|..+++....+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 4567889999999999988876654 588999999999999999998764321
Q ss_pred -CCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEee
Q 040332 204 -IFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTA 280 (1210)
Q Consensus 204 -~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTt 280 (1210)
+++.+ .+..+....+.++ +++.+.+..... .+++-++|+|++... ..++.+...+......+.+|++|
T Consensus 94 ~~~n~~-~~~~~~~~~id~I-r~l~~~~~~~p~-------~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 94 TSLNIS-EFDAASNNSVDDI-RLLRENVRYGPQ-------KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred CCCCeE-eecccccCCHHHH-HHHHHHHhhchh-------cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 22221 2222222223333 344444421111 345568899998765 35666655554444456655554
Q ss_pred -CchhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHH
Q 040332 281 -RSLDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSI 341 (1210)
Q Consensus 281 -R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 341 (1210)
+...+..........+++.+++.++..+.+...+.... ..--.+.+..|++.++|.+--+
T Consensus 165 ~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 165 TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 44444322122335789999999999888887763211 1112456788999999976433
No 97
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=5.5e-05 Score=89.78 Aligned_cols=188 Identities=13% Similarity=0.158 Sum_probs=116.2
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKIKSD-------------------KIFDQVVFA 211 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv 211 (1210)
...+++|.+..++.+.+++..++.. .+-++|+.|+||||+|+.+++..... ..|...+++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 4667889999999999998876654 56899999999999999999876321 123334555
Q ss_pred EecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEee-Cchhhhhh
Q 040332 212 EVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTA-RSLDVLSR 288 (1210)
Q Consensus 212 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTt-R~~~v~~~ 288 (1210)
..+....+.. ++++.+....... .+++-++|+|+++... ....+...+-.....+.+|++| ..+.+...
T Consensus 94 ~~~~~~~vd~-ir~l~~~~~~~p~-------~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~t 165 (527)
T PRK14969 94 DAASNTQVDA-MRELLDNAQYAPT-------RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 165 (527)
T ss_pred eccccCCHHH-HHHHHHHHhhCcc-------cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchh
Confidence 5443334333 3455554422111 4567789999998653 3444444443333455555544 44443321
Q ss_pred cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch-HHHHHHHHH
Q 040332 289 KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV-SIVTVARAL 348 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~l 348 (1210)
.......+++++++.++..+.+.+.+...... --.+....|++.++|.+- |+..+-.++
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 166 VLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12234578999999999988887766422211 123455788899999764 444443333
No 98
>PRK09087 hypothetical protein; Validated
Probab=98.05 E-value=8e-05 Score=78.18 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=88.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDN 253 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDd 253 (1210)
..+.+.|+|..|+|||+|++..++.... .|++.. .+..++...+. .-+|++||
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~~~~~--------------~~~l~iDD 95 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAANAAA--------------EGPVLIED 95 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHHHhhh--------------cCeEEEEC
Confidence 3567999999999999999998876432 244332 22222332221 12788899
Q ss_pred CCCc----cchhhhcccCCCCCCCeEEEEeeCch---------hhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCC
Q 040332 254 IWEN----LDLRVVGIPHGDDHRGCKILLTARSL---------DVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEG 320 (1210)
Q Consensus 254 v~~~----~~~~~~~~~~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 320 (1210)
+... +.+-.+...+. ..|..||+|++.. +..+ .+.....+++++++.++-.+++++.+.... -
T Consensus 96 i~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~-~ 171 (226)
T PRK09087 96 IDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVVEIGEPDDALLSQVIFKLFADRQ-L 171 (226)
T ss_pred CCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHH-HHhCCceeecCCCCHHHHHHHHHHHHHHcC-C
Confidence 9643 22222221111 2366799988742 2222 245557899999999999999999885321 1
Q ss_pred chHHHHHHHHHHHhCCcchHHHHHHHHH
Q 040332 321 SEFQLVAREVEKECAGLPVSIVTVARAL 348 (1210)
Q Consensus 321 ~~~~~~~~~i~~~c~glPlai~~~~~~l 348 (1210)
.--+++..-|++.+.|..-++..+-..|
T Consensus 172 ~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 172 YVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred CCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1224567788888887776665433333
No 99
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=3.5e-06 Score=67.98 Aligned_cols=57 Identities=35% Similarity=0.542 Sum_probs=30.6
Q ss_pred CCcEEEeecCCCcccCc-ccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCC
Q 040332 596 KLEFLCLRGCDIRQLPI-EVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDN 653 (1210)
Q Consensus 596 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n 653 (1210)
+|++|++++|++..+|. .+..+++|++|++++| .+..++++.+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555555555543 3455555555555554 455555555555555555555554
No 100
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.02 E-value=1.3e-05 Score=82.53 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=34.9
Q ss_pred cccccHHHHHHHHHHhC---CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 155 AFESRMPTLRSILSALE---DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
.|+||+++++++...+. ....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999993 5567999999999999999999999988765
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00011 Score=87.74 Aligned_cols=185 Identities=13% Similarity=0.159 Sum_probs=116.9
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccCC------------------------C
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDKI------------------------F 205 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~~------------------------F 205 (1210)
....+++|.+..++.+.+++..++. ..+-++|+.|+||||+|+.+++....... .
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRH 100 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCC
Confidence 4577889999999999999986664 46899999999999999999987532211 1
Q ss_pred CeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE-eeCc
Q 040332 206 DQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL-TARS 282 (1210)
Q Consensus 206 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TtR~ 282 (1210)
.-++++.......+.++ ++|.+.+..... .+++-++|+|++... ...+.+...+-.-..++++|+ ||..
T Consensus 101 ~Dv~e~~a~s~~gvd~I-ReIie~~~~~P~-------~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 101 VDVLEMDAASHTGVDDI-REIIESVRYRPV-------SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred CceEEecccccCCHHHH-HHHHHHHHhchh-------cCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 11345544433344443 455554422111 344557899998755 334555444433334566554 5554
Q ss_pred hhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 283 LDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 283 ~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
..+..........+++..++.++....+.+.+...... --.+....|++.++|.+.-+...
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55443323445689999999999999998876422111 11346678899999987655443
No 102
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.00 E-value=1.4e-05 Score=76.81 Aligned_cols=107 Identities=22% Similarity=0.354 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhcc---CCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccc--------
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSD---KIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGR-------- 242 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-------- 242 (1210)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+..+|+.+++...........
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999999986431 0124467999988889999999999999877665211111
Q ss_pred --cCccEEEEEeCCCCc---cchhhhcccCCCCCCCeEEEEeeCc
Q 040332 243 --EEKKILVILDNIWEN---LDLRVVGIPHGDDHRGCKILLTARS 282 (1210)
Q Consensus 243 --~~kr~LlvlDdv~~~---~~~~~~~~~~~~~~~gs~iivTtR~ 282 (1210)
+.+..+||+|+++.. ..++.+.... + ..+.+||++-+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 444579999999765 2334443322 2 567788877664
No 103
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00014 Score=87.11 Aligned_cols=184 Identities=11% Similarity=0.100 Sum_probs=112.1
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc----------------------------
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD---------------------------- 202 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~---------------------------- 202 (1210)
...+++|.+..+..+.+++..+.. ..+-++|+.|+||||+|+.+++..-.+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 567888999999999998876665 458899999999999999999876432
Q ss_pred CCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE-Ee
Q 040332 203 KIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKIL-LT 279 (1210)
Q Consensus 203 ~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vT 279 (1210)
.+|+.+.+ .......+.++ +++.+.+..... .+++-++|+|+++.. ...+.+...+-.-...+.+| +|
T Consensus 94 ~~~n~~~~-d~~s~~~vd~I-r~l~e~~~~~P~-------~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 94 TSLNISEF-DAASNNSVDDI-RQLRENVRYGPQ-------KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred CCCCeEEe-cccccCCHHHH-HHHHHHHHhhhh-------cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 12332222 22222223333 344444421110 344557899998765 33444544443323345544 45
Q ss_pred eCchhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc-hHHHHHH
Q 040332 280 ARSLDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP-VSIVTVA 345 (1210)
Q Consensus 280 tR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 345 (1210)
++...+..........+++.+++.++....+.+.+..... .--.+.+..|++.++|.. .|+..+-
T Consensus 165 ~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5545554333445678999999999988888776632111 112346778999999844 4444443
No 104
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.97 E-value=5.4e-07 Score=91.66 Aligned_cols=107 Identities=25% Similarity=0.274 Sum_probs=84.3
Q ss_pred hcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCC-CCCCCCCcEEEeecCCCcccCcccCCCCCCCEEec
Q 040332 547 ERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISG-IGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDL 625 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~-i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 625 (1210)
.-.+.+|+|+++.|.+..+-. +..|++|+.|||++|.+..... -.+|-|.++|.+++|.+..+. ++++|.+|..|++
T Consensus 304 KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl 381 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDL 381 (490)
T ss_pred hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccc
Confidence 446678999999998887755 7888899999999998877443 357788888999998888775 6888899999999
Q ss_pred CCCCCCCccCh-hhhcCCCcccEEEccCCCCc
Q 040332 626 RDCSKLEVIPP-HILSNLSHLEELNIGDNSFY 656 (1210)
Q Consensus 626 ~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~ 656 (1210)
++| .++.+.. ..+|+|+.|+++.+.+|++.
T Consensus 382 ~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 382 SSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 988 6655432 12688999999999888774
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.0002 Score=82.30 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=107.2
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc------CCCCe-EEEEEecCCcCHHHHH
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD------KIFDQ-VVFAEVSQSQDIRKIQ 223 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~------~~F~~-~~wv~vs~~~~~~~~~ 223 (1210)
...+++|.+...+.+.+++..+.. +.+-++|++|+||||+|+.+.+..... ..|.. ++-+......+... .
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-I 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-H
Confidence 456788999999999999986654 588899999999999999998876431 12222 12222222222233 3
Q ss_pred HHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEee-CchhhhhhcCCCcceeeecC
Q 040332 224 GEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTA-RSLDVLSRKMDSQQNFAVGI 300 (1210)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTt-R~~~v~~~~~~~~~~~~l~~ 300 (1210)
+++.+++.... ..+++-++|+|++... ..++.+...+......+.+|++| +...+..........++.++
T Consensus 94 ~~l~~~~~~~p-------~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~ 166 (367)
T PRK14970 94 RNLIDQVRIPP-------QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKR 166 (367)
T ss_pred HHHHHHHhhcc-------ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCC
Confidence 34444432110 0234557999998754 33555543332222344555544 43333222223345789999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch
Q 040332 301 LKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV 339 (1210)
Q Consensus 301 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 339 (1210)
++.++....+.+.+..... .--.+....|++.++|.+-
T Consensus 167 ~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 167 ITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALR 204 (367)
T ss_pred ccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHH
Confidence 9999999888877642221 1113567788888888554
No 106
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.95 E-value=4.2e-05 Score=87.50 Aligned_cols=169 Identities=20% Similarity=0.232 Sum_probs=99.7
Q ss_pred ccCcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 150 SKDYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
.....++.|+++.++++...+. . ...+-+.++|++|+|||++|+++++..... | +.+...
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~~ 190 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVGS 190 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----EecchH
Confidence 3445678899999999887763 1 124568999999999999999999977532 3 222111
Q ss_pred c-------CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc----------------chhhhcccCC--CCC
Q 040332 217 Q-------DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL----------------DLRVVGIPHG--DDH 271 (1210)
Q Consensus 217 ~-------~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~----------------~~~~~~~~~~--~~~ 271 (1210)
. ......+.+.+... .....+|++|+++... .+..+...+. ...
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~-----------~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAK-----------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH-----------hcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0 00111122221110 3456799999987531 1112221121 123
Q ss_pred CCeEEEEeeCchhhhhhcC----CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 272 RGCKILLTARSLDVLSRKM----DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 272 ~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
.+.+||.||.......... .-...+.++..+.++..++|..++......+.. ....+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 4678888887644322111 123478999999999999999887543222211 1356777777754
No 107
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00018 Score=85.47 Aligned_cols=188 Identities=16% Similarity=0.144 Sum_probs=116.3
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEcCCCCcHHHHHHHHHHHhhccC----------------------CCCeE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKIKSDK----------------------IFDQV 208 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~gGiGKTtLa~~v~~~~~~~~----------------------~F~~~ 208 (1210)
...+++|.+..++.|.+++..++.. .+-++|+.|+||||+|+.+++...... +.| +
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d-v 89 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID-V 89 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce-E
Confidence 4678889999999999999876654 468999999999999999998754211 112 3
Q ss_pred EEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeE-EEEeeCchhh
Q 040332 209 VFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCK-ILLTARSLDV 285 (1210)
Q Consensus 209 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~-iivTtR~~~v 285 (1210)
+.+..+....+..+ ++|.+.+..... .+++-++|+|++... ...+.+...+-.-..... |++||....+
T Consensus 90 ieidaas~~gvd~i-Rel~~~~~~~P~-------~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 90 VELDAASHGGVDDT-RELRDRAFYAPA-------QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred EEeccccccCHHHH-HHHHHHHHhhhh-------cCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 44544333334333 444433321100 244558899998754 445554444433333444 4456555555
Q ss_pred hhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc-hHHHHHHHHHH
Q 040332 286 LSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP-VSIVTVARALR 349 (1210)
Q Consensus 286 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l~ 349 (1210)
..........+++.+++.++..+.+.+.+...... --.+....|++..+|.+ -|+..+-.++.
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-VDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 43323445689999999999988887766422211 11345677888888866 45555544443
No 108
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00016 Score=89.37 Aligned_cols=180 Identities=12% Similarity=0.097 Sum_probs=113.3
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccC----------------------CCCeE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDK----------------------IFDQV 208 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~----------------------~F~~~ 208 (1210)
...+++|.+..++.|.+++..++. ..+.++|..|+||||+|+.+.+...... ++| +
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v 91 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-V 91 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-E
Confidence 466788999999999999987665 4578999999999999999998874211 122 3
Q ss_pred EEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE-EeeCchhh
Q 040332 209 VFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKIL-LTARSLDV 285 (1210)
Q Consensus 209 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTtR~~~v 285 (1210)
+++.......+.++ +++.+.+..... .+++-++|||+++.. ..++.+...+-.-...+.+| +||....+
T Consensus 92 ~eidaas~~~Vd~i-R~l~~~~~~~p~-------~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 92 TEIDAASHGGVDDA-RELRERAFFAPA-------ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred EEecccccCCHHHH-HHHHHHHHhchh-------cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 44544333334443 334433321111 345567889999865 44555544444333455555 55554555
Q ss_pred hhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHH
Q 040332 286 LSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSI 341 (1210)
Q Consensus 286 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 341 (1210)
..........|++..++.++..+.+.+.+...... --.+....|++.++|.+..+
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 43333446789999999999988888766322211 11334567899999977433
No 109
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00022 Score=85.69 Aligned_cols=184 Identities=12% Similarity=0.118 Sum_probs=112.5
Q ss_pred CcccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhccC-----------------CCCeEEEEEe
Q 040332 152 DYEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSDK-----------------IFDQVVFAEV 213 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-----------------~F~~~~wv~v 213 (1210)
...+++|.+..++.+.+++..++ .+.+-++|+.|+||||+|+.+++..-... ++| ++++..
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieida 94 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDA 94 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEec
Confidence 46678899999999999998665 45668999999999999999987653211 112 233332
Q ss_pred cCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeE-EEEeeCchhhhhhcC
Q 040332 214 SQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCK-ILLTARSLDVLSRKM 290 (1210)
Q Consensus 214 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~-iivTtR~~~v~~~~~ 290 (1210)
.....+.. .+++.+.+..... .+++-++|+|++... ..+..+...+-....... |++||+...+.....
T Consensus 95 asn~~vd~-IReLie~~~~~P~-------~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 95 ASNNGVDE-IRELIENVKNLPT-------QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred cccCCHHH-HHHHHHHHHhchh-------cCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHH
Confidence 22222332 3444444321111 356668899998754 455555443332223344 556666555543334
Q ss_pred CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch-HHHHHH
Q 040332 291 DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV-SIVTVA 345 (1210)
Q Consensus 291 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 345 (1210)
.....+++.+++.++..+.+...+...... --.+.+..|++.++|.+- |+..+-
T Consensus 167 SRcq~ieF~~L~~eeI~~~L~~il~kegI~-id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 167 SRVQRFNFRRISEDEIVSRLEFILEKENIS-YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhceeEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445689999999999988888765322111 113456789999988664 444433
No 110
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.90 E-value=2.5e-05 Score=86.20 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=62.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC--cCHHHHHHHHHHHhCCCcccCCcccc--------
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS--QDIRKIQGEIADKLGLKFHEESEPGR-------- 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~-------- 242 (1210)
+....++|+|.+|+|||||++.+++..... +|+..+||.+.+. ..+.++++.+...+-...-+.....+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 455789999999999999999999998764 8999999999865 68888888884332211111111111
Q ss_pred --------cCccEEEEEeCCCCc
Q 040332 243 --------EEKKILVILDNIWEN 257 (1210)
Q Consensus 243 --------~~kr~LlvlDdv~~~ 257 (1210)
.+++.+|++|++..-
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 789999999999754
No 111
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00033 Score=84.57 Aligned_cols=180 Identities=11% Similarity=0.122 Sum_probs=114.9
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhh---------------------ccCCCCeEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIK---------------------SDKIFDQVV 209 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~~~~ 209 (1210)
...+++|.+...+.+.+++..+.. +.+-++|..|+||||+|+.+..... ...+|+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 466788999999999999987665 4578999999999999999988653 1234553 3
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE-EeeCchhhh
Q 040332 210 FAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKIL-LTARSLDVL 286 (1210)
Q Consensus 210 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTtR~~~v~ 286 (1210)
.+..+....+.++ +++++++..... .+++=++|+|++... ..++.+...+..-..++.+| +||+...+.
T Consensus 94 ~ld~~~~~~vd~I-r~li~~~~~~P~-------~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 94 ELDAASNNSVDDI-RNLIEQVRIPPQ-------IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred EecccccCCHHHH-HHHHHHHhhCcc-------cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 4444433334444 344444322111 234557899998765 34555554443333455554 455555554
Q ss_pred hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHH
Q 040332 287 SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSI 341 (1210)
Q Consensus 287 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 341 (1210)
.........+++.+++.++....+.+.+....-. --.+.+..|++.++|..--+
T Consensus 166 ~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 166 PTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred HHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 3334456689999999999998888776432211 11345778999999866433
No 112
>PLN03150 hypothetical protein; Provisional
Probab=97.85 E-value=2.6e-05 Score=95.30 Aligned_cols=105 Identities=30% Similarity=0.358 Sum_probs=86.5
Q ss_pred CCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCc-ccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEc
Q 040332 574 NLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIR-QLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNI 650 (1210)
Q Consensus 574 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l 650 (1210)
.++.|+|++|.+.. |..++++.+|+.|+|++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47889999999887 778999999999999999887 78889999999999999999555677776 599999999999
Q ss_pred cCCCCccccccccccCccccccC-CCCCEEEeeccCC
Q 040332 651 GDNSFYHWEVEVDGVKNASLNEL-KHLTSLQLRIKDI 686 (1210)
Q Consensus 651 ~~n~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~ 686 (1210)
++|.+ .+..|..+..+ .++..+++.+|..
T Consensus 498 s~N~l-------~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSL-------SGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcc-------cccCChHHhhccccCceEEecCCcc
Confidence 99877 45667666653 4566777776643
No 113
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.83 E-value=0.00015 Score=83.26 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=97.4
Q ss_pred cCcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc
Q 040332 151 KDYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ 217 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 217 (1210)
.....+.|+++.++++...+. . ...+-|.++|++|+|||++|+++++..... |+.++...
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~~~ 200 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVGSE 200 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeehHH
Confidence 345578899999998887653 1 235678999999999999999999876532 22222110
Q ss_pred -------CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc------------c-hh---hhcccCC--CCCC
Q 040332 218 -------DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL------------D-LR---VVGIPHG--DDHR 272 (1210)
Q Consensus 218 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~------------~-~~---~~~~~~~--~~~~ 272 (1210)
......+.+..... .....+|++||++... . .. .+...+. ....
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~-----------~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAR-----------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HhHhhccchHHHHHHHHHHHH-----------hcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 11122233322211 3446789999987531 1 11 1111111 1123
Q ss_pred CeEEEEeeCchhhhhhcC---C-CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 273 GCKILLTARSLDVLSRKM---D-SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 273 gs~iivTtR~~~v~~~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
+..||.||.......... + -...+.+++.+.++-.++|+.++......... ....+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 567888887644332211 1 13468999999999999999887533221111 1345666666543
No 114
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=2.1e-07 Score=105.71 Aligned_cols=176 Identities=26% Similarity=0.321 Sum_probs=121.3
Q ss_pred ccceeEEEecccccccCCCcCCC-CchhHHHhhhcCCCCcccccchhhh----------cCCcceEEEecCcccccCCcc
Q 040332 500 VKLYTSIVLRDVKTNLLPELVEC-PQLKLFLIHADKESPSLSIANNFFE----------RMIQVRVINLSYVDLLSLPSS 568 (1210)
Q Consensus 500 ~~~~~~l~l~~~~~~~l~~~~~~-~~Lr~L~~~~~~~~~~~~~~~~~~~----------~l~~Lr~L~l~~~~~~~lp~~ 568 (1210)
++.+|++-+.++++.....+..+ .+|..|+.+. + ......+|. -...|.+.+.++|.+..+-.+
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~-S----l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN-S----LDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc-c----HHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH
Confidence 56789999988887554332211 2333332110 0 000111111 134577888888888888888
Q ss_pred ccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecCCCCCCCccChhhhcCCCcccE
Q 040332 569 LVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEE 647 (1210)
Q Consensus 569 i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~ 647 (1210)
+.-+++|+.|+|++|++.....+..|.+|++|||++|.+..+|. ++..+. |+.|.+++| .++.+-. +.+|++|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~g--ie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLRG--IENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhhh--HHhhhhhhc
Confidence 88899999999999999887788999999999999999988886 333444 999999988 6776654 689999999
Q ss_pred EEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCC
Q 040332 648 LNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 648 L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
|+++.|.+.. ......+..|..|+.|.+.+|.+..-|
T Consensus 259 LDlsyNll~~------hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLSE------HSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhhc------chhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999886631 233345556667778888888776544
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00045 Score=83.74 Aligned_cols=185 Identities=12% Similarity=0.139 Sum_probs=114.2
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccC---------------------CCCeEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDK---------------------IFDQVV 209 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~ 209 (1210)
...+++|.+..++.+..++..+.. ..+-++|..|+||||+|+.+++...... |.| ++
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d-~~ 92 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD-VI 92 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe-EE
Confidence 466888999999999988876554 5668999999999999999998764211 111 23
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeC-chhhh
Q 040332 210 FAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTAR-SLDVL 286 (1210)
Q Consensus 210 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR-~~~v~ 286 (1210)
.+..+....... .++|.+.+..... .+++-++|+|++... ...+.+...+......+.+|++|. ...+.
T Consensus 93 ~i~~~~~~~vd~-ir~ii~~~~~~p~-------~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 93 EMDAASHTSVDD-AREIIERVQFRPA-------LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred EEeccccCCHHH-HHHHHHHHhhCcc-------cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 333333333333 3455544422111 345668999998754 345555444433334555655554 33443
Q ss_pred hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHH
Q 040332 287 SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVAR 346 (1210)
Q Consensus 287 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 346 (1210)
.........+.+..++.++....+.+.+...... --.+.+..|++.++|.+-.+...-.
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2222334578899999999888888776432211 1135677899999998865554433
No 116
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.82 E-value=0.0002 Score=80.65 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=87.4
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADK 229 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 229 (1210)
....+++|.+...+.+..++..+.. .++.++|.+|+||||+|+.+++.... ....++.+. .....+...+.+.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i~~~l~~~ 91 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFVRNRLTRF 91 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHHHHHHHHH
Confidence 4567889999999999999886654 56666999999999999999987531 123444444 2222222222211
Q ss_pred hCCCcccCCcccccCccEEEEEeCCCCc---cchhhhcccCCCCCCCeEEEEeeCchhhh-hhcCCCcceeeecCCCHHH
Q 040332 230 LGLKFHEESEPGREEKKILVILDNIWEN---LDLRVVGIPHGDDHRGCKILLTARSLDVL-SRKMDSQQNFAVGILKEVE 305 (1210)
Q Consensus 230 l~~~~~~~~~~~~~~kr~LlvlDdv~~~---~~~~~~~~~~~~~~~gs~iivTtR~~~v~-~~~~~~~~~~~l~~L~~~~ 305 (1210)
... .. ..+.+-++|+||++.. +....+...+.....++++|+||...... .........+.++..+.++
T Consensus 92 ~~~-~~------~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~ 164 (316)
T PHA02544 92 AST-VS------LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEE 164 (316)
T ss_pred HHh-hc------ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHH
Confidence 110 00 0123457889999755 12222322233334567888888653321 1112223467777777777
Q ss_pred HHHHHHH
Q 040332 306 AWSLFKK 312 (1210)
Q Consensus 306 ~~~lf~~ 312 (1210)
..+++..
T Consensus 165 ~~~il~~ 171 (316)
T PHA02544 165 QIEMMKQ 171 (316)
T ss_pred HHHHHHH
Confidence 7666544
No 117
>PTZ00202 tuzin; Provisional
Probab=97.81 E-value=8.9e-05 Score=81.57 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=97.2
Q ss_pred ccCcccccccHHHHHHHHHHhCC---CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHH
Q 040332 150 SKDYEAFESRMPTLRSILSALED---PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEI 226 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 226 (1210)
+.+...|+||+.++.++...|.+ +..+++.|.|++|+|||||++.+..... + ..++++.. +..++++.+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHH
Confidence 45678999999999999998862 2346899999999999999999996653 1 13333322 679999999
Q ss_pred HHHhCCCcccCC-cccc------------cCccEEEEEeCCCCccchhhhc---ccCCCCCCCeEEEEeeCchhhh--hh
Q 040332 227 ADKLGLKFHEES-EPGR------------EEKKILVILDNIWENLDLRVVG---IPHGDDHRGCKILLTARSLDVL--SR 288 (1210)
Q Consensus 227 ~~~l~~~~~~~~-~~~~------------~~kr~LlvlDdv~~~~~~~~~~---~~~~~~~~gs~iivTtR~~~v~--~~ 288 (1210)
+.+||....... +..+ ++++.+||+-=-+ ...+..+. ..+.....-|.|++----+.+. ..
T Consensus 330 L~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lre-g~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 330 VKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLRE-GSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC-CCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcc
Confidence 999997432221 1101 3777777764322 11111110 1122223346676644433321 11
Q ss_pred cCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 289 KMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
....-..|-+++++.++|.+.-.+..
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhhcc
Confidence 23334578899999999988765543
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.81 E-value=0.00021 Score=76.08 Aligned_cols=169 Identities=10% Similarity=0.061 Sum_probs=94.1
Q ss_pred ccHHH-HHHHHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcc
Q 040332 158 SRMPT-LRSILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFH 235 (1210)
Q Consensus 158 gr~~~-~~~l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 235 (1210)
|+... +..+.++.. ....+.+.|+|..|+|||+||+.+++..... . ...++++..... ..+ ..
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~-~~~~~i~~~~~~------~~~-~~------ 87 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-G-RNARYLDAASPL------LAF-DF------ 87 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEehHHhH------HHH-hh------
Confidence 44333 344444433 2345688999999999999999999976422 1 234555543321 110 00
Q ss_pred cCCcccccCccEEEEEeCCCCccch--hhhcccCCC-CCCCe-EEEEeeCchhhhhh-------cCCCcceeeecCCCHH
Q 040332 236 EESEPGREEKKILVILDNIWENLDL--RVVGIPHGD-DHRGC-KILLTARSLDVLSR-------KMDSQQNFAVGILKEV 304 (1210)
Q Consensus 236 ~~~~~~~~~kr~LlvlDdv~~~~~~--~~~~~~~~~-~~~gs-~iivTtR~~~v~~~-------~~~~~~~~~l~~L~~~ 304 (1210)
....-++|+||+.....+ +.+...+.. ...|. .||+|++....... .......+++++++++
T Consensus 88 -------~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 88 -------DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDA 160 (227)
T ss_pred -------cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHH
Confidence 112337889999754322 222222211 11233 46666664332111 1222357899999998
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 040332 305 EAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALR 349 (1210)
Q Consensus 305 ~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 349 (1210)
+-..++.+.+.... -.--++..+.+++...|.+..+..+-..+.
T Consensus 161 ~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 161 DKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 87777766543211 111235667788888888887777666554
No 119
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.0006 Score=79.94 Aligned_cols=184 Identities=12% Similarity=0.089 Sum_probs=110.4
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD-------------------KIFDQVVFA 211 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv 211 (1210)
...+++|.+.....+.+++..+.. ..+-++|+.|+||||+|+.++...... ..|...+++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 456788999999999999986554 456789999999999999998865310 112234455
Q ss_pred EecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE-EeeCchhhhhh
Q 040332 212 EVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKIL-LTARSLDVLSR 288 (1210)
Q Consensus 212 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTtR~~~v~~~ 288 (1210)
..+.......+ +.|.+.+..... .+++-++|+|+++.. ...+.+...+........+| +||+...+...
T Consensus 94 daas~~gvd~i-r~I~~~~~~~P~-------~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~t 165 (486)
T PRK14953 94 DAASNRGIDDI-RALRDAVSYTPI-------KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPT 165 (486)
T ss_pred eCccCCCHHHH-HHHHHHHHhCcc-------cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHH
Confidence 44333333322 334333321111 356679999998754 34444443333323344444 45554444322
Q ss_pred cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 289 KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
.......+.+.+++.++....+.+.+..... .--.+.+..|++.++|.+-.+...
T Consensus 166 I~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 166 ILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2233457899999999998888876642211 112345667888888866544433
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00047 Score=80.33 Aligned_cols=184 Identities=13% Similarity=0.110 Sum_probs=110.9
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc---------------------CCCCeEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD---------------------KIFDQVV 209 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~~~~ 209 (1210)
...+++|.+..++.+.+++..+.. ..+-++|..|+||||+|+.+++..-.. .+++ .+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 466888999999999999886664 568899999999999999999875321 1233 22
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEee-Cchhhh
Q 040332 210 FAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTA-RSLDVL 286 (1210)
Q Consensus 210 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTt-R~~~v~ 286 (1210)
++.........++ +++.+.+..... .+++-++|+|+++.. ...+.+...+-....+..+|++| +...+.
T Consensus 94 ~i~g~~~~gid~i-r~i~~~l~~~~~-------~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~ 165 (451)
T PRK06305 94 EIDGASHRGIEDI-RQINETVLFTPS-------KSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP 165 (451)
T ss_pred EeeccccCCHHHH-HHHHHHHHhhhh-------cCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc
Confidence 3322222223332 334443321111 345668899998754 23344443333333355566555 333332
Q ss_pred hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc-hHHHHHH
Q 040332 287 SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP-VSIVTVA 345 (1210)
Q Consensus 287 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 345 (1210)
.........+++.+++.++....+.+.+..... .--.+.+..|++.++|.+ .|+..+-
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222334557999999999988888876642211 112346778999999865 4444443
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=97.78 E-value=0.00037 Score=73.91 Aligned_cols=152 Identities=15% Similarity=0.153 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIW 255 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~ 255 (1210)
..+.|+|..|+|||.|++.+++....+ -..++|++..+-... ...+.+.+ .+- =++|+||+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~~~~~---~~~~~~~~------------~~~-d~LiiDDi~ 107 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAELLDR---GPELLDNL------------EQY-ELVCLDDLD 107 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHHHHhh---hHHHHHhh------------hhC-CEEEEechh
Confidence 678999999999999999999876533 235677765431110 11222222 111 168899996
Q ss_pred Cc---cchhh-hcccCCC-CCCCeEEEEeeCchhhh-h-------hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCch
Q 040332 256 EN---LDLRV-VGIPHGD-DHRGCKILLTARSLDVL-S-------RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSE 322 (1210)
Q Consensus 256 ~~---~~~~~-~~~~~~~-~~~gs~iivTtR~~~v~-~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~ 322 (1210)
.. ..|+. +...+.. ..+|.+||+|++...-. . .......++++++++.++-.+.+++++.... -.-
T Consensus 108 ~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~l 186 (234)
T PRK05642 108 VIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LHL 186 (234)
T ss_pred hhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCC
Confidence 33 35533 3222211 12456788888753321 1 0122335789999999999999986664221 111
Q ss_pred HHHHHHHHHHHhCCcchHHHHHHH
Q 040332 323 FQLVAREVEKECAGLPVSIVTVAR 346 (1210)
Q Consensus 323 ~~~~~~~i~~~c~glPlai~~~~~ 346 (1210)
-+++..-|++++.|..-++..+-.
T Consensus 187 ~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 187 TDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHH
Confidence 145667777777776544444333
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00058 Score=79.88 Aligned_cols=184 Identities=15% Similarity=0.171 Sum_probs=113.0
Q ss_pred cCcccccccHHHHHHHHHHhCCCCce-EEEEEcCCCCcHHHHHHHHHHHhhcc--------------------CCCCeEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVN-MLGIYGMGGIGKTMLAEEVARKIKSD--------------------KIFDQVV 209 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 209 (1210)
....+++|.+...+.+..++..++.. ++-++|..|+||||+|+.+++..-.. .|++ ++
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-II 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EE
Confidence 34677899999999999998766654 56899999999999999998875311 1122 33
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCc-hhhh
Q 040332 210 FAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARS-LDVL 286 (1210)
Q Consensus 210 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~-~~v~ 286 (1210)
.+..+....+..+ +++++...... ..+++-++|+|++... +..+.+...+-.....+++|++|.+ ..+.
T Consensus 90 eldaas~~gId~I-Relie~~~~~P-------~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 90 EMDAASNRGIDDI-RELIEQTKYKP-------SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred EeccccccCHHHH-HHHHHHHhhCc-------ccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 4433333334443 33444322110 0245668899999765 3444444333332345666655554 3332
Q ss_pred hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 287 SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 287 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
.........+++.+++.++..+.+.+.+...... --.+.+..|++.++|.+--+...
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHH
Confidence 2223345689999999999988887766432211 12456778999999988544443
No 123
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00071 Score=81.65 Aligned_cols=185 Identities=11% Similarity=0.053 Sum_probs=111.8
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccCCC---------------------CeE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDKIF---------------------DQV 208 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~~ 208 (1210)
.....++|.+.....+..++..++. +.+-++|..|+||||+|+.+++..-..... ..+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~ 92 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDV 92 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccE
Confidence 3456788999999999998886543 678899999999999999999886432111 012
Q ss_pred EEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE-EeeCchhh
Q 040332 209 VFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKIL-LTARSLDV 285 (1210)
Q Consensus 209 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTtR~~~v 285 (1210)
+.+.......+ +-++++.+.+..... .+++-++|+|+++.. +.++.+...+-.-.....+| +|+....+
T Consensus 93 ~ei~~~~~~~v-d~IReii~~a~~~p~-------~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 93 IEIDAASNTGV-DNIRELIERAQFAPV-------QARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred EEEeccccCCH-HHHHHHHHHHhhChh-------cCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 23333222333 333455444322111 244568899999865 44555544443322344444 45444444
Q ss_pred hhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 286 LSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 286 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
..........+++..++.++....+.+.+...... --.+.+..|++.++|.+..+...
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33223345678889999998888877766432111 11245778899999877544433
No 124
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.75 E-value=0.00013 Score=76.89 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=96.5
Q ss_pred cccccccHHHHH---HHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 040332 153 YEAFESRMPTLR---SILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADK 229 (1210)
Q Consensus 153 ~~~~~gr~~~~~---~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 229 (1210)
..++||.+..+. -+.+.+..+....+.+||++|+||||||+.+...-+... ..||..|-...-..-.+.|.++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 344555544332 234444577889999999999999999999998876432 5677776554333333444443
Q ss_pred hCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE--eeCchhhh--hhcCCCcceeeecCCCH
Q 040332 230 LGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL--TARSLDVL--SRKMDSQQNFAVGILKE 303 (1210)
Q Consensus 230 l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv--TtR~~~v~--~~~~~~~~~~~l~~L~~ 303 (1210)
-... ....++|.+|.+|.|..- .+-+.+ +|.-.+|.-++| ||.+...- ........++.|+.|+.
T Consensus 213 aq~~------~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~ 283 (554)
T KOG2028|consen 213 AQNE------KSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPV 283 (554)
T ss_pred HHHH------HhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCH
Confidence 2110 111578899999999754 333322 455567776665 77775431 22355667899999999
Q ss_pred HHHHHHHHHHh
Q 040332 304 VEAWSLFKKMA 314 (1210)
Q Consensus 304 ~~~~~lf~~~~ 314 (1210)
++-..++.+..
T Consensus 284 n~v~~iL~rai 294 (554)
T KOG2028|consen 284 NAVVTILMRAI 294 (554)
T ss_pred HHHHHHHHHHH
Confidence 99999988744
No 125
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=1.3e-05 Score=81.94 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=18.1
Q ss_pred CccccccchhhhhcccccEEEEeccccccce
Q 040332 832 NLGCLFSSSIVSSFVRLQHLQIWGCPVLEEI 862 (1210)
Q Consensus 832 ~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l 862 (1210)
++.++.....+.+|++|..|.+.+.+-++.+
T Consensus 235 ~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 235 NIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3444444455566777777777776644443
No 126
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00091 Score=80.19 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=110.6
Q ss_pred cCcccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhcc--------------------CCCCeEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSD--------------------KIFDQVV 209 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 209 (1210)
....+++|.+...+.+.+++..++ .+.+-++|+.|+||||+|+.+++..-.. .++| ++
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~ 91 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VI 91 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eE
Confidence 356788999999999999988654 4567789999999999999998875321 1233 23
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeE-EEEeeCchhhh
Q 040332 210 FAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCK-ILLTARSLDVL 286 (1210)
Q Consensus 210 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~-iivTtR~~~v~ 286 (1210)
.+..+....+.. .+++.+....... .+++-++|+|++... ..+..+...+........ |+.||....+.
T Consensus 92 eidaas~~~vd~-ir~i~~~v~~~p~-------~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 92 EIDAASNNGVDE-IRDIRDKVKYAPS-------EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred EeeccccCCHHH-HHHHHHHHhhCcc-------cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 444433333332 2344443321111 455668899999754 345555443332223334 44555555544
Q ss_pred hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHH
Q 040332 287 SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSI 341 (1210)
Q Consensus 287 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 341 (1210)
.........++..+++.++....+...+......- -.+....|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 33233456788999999998888887764221111 1345677888888866433
No 127
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=4.9e-06 Score=85.05 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=78.7
Q ss_pred CCcceeeeccccccccc---cccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccc
Q 040332 938 PSLEELSVDVKHIAAIN---KCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVEN 1014 (1210)
Q Consensus 938 ~sL~~L~l~~~~~~~~~---~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~ 1014 (1210)
+.|+.|++++..++... -+..+..|+.|++..+.|. .-...-+..-.+|+.|+|+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld--------D~I~~~iAkN~~L~~lnls-------------- 242 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD--------DPIVNTIAKNSNLVRLNLS-------------- 242 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC--------cHHHHHHhccccceeeccc--------------
Confidence 34888888877654321 1224566666666666662 1223345556667777776
Q ss_pred cchhhhhhhccccCccccccc-cccCcCcccEEEEeccccccccCCC--CccccCccEEEEccCCCccee-cchhHHhhh
Q 040332 1015 GMEVIIREANKCCDLKHILKQ-ESSNMNNLVILHVIRCNNLINLVPS--SLSFQNLTTLKVSYCKGLMKV-LTSSIAKSL 1090 (1210)
Q Consensus 1015 ~~~~~l~~l~~~~~L~~~~~~-~l~~l~~L~~L~l~~c~~L~~l~~~--~~~l~~L~~L~i~~c~~L~~l-~~~~~~~~l 1090 (1210)
.|+.++.-... -+.+++.|.+|+|++|...+..... .+--.+|..|+|+||.+--.. -.+.....+
T Consensus 243 ----------m~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 243 ----------MCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred ----------cccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 23333322111 1345666777777777655432100 112345666666666422111 011223445
Q ss_pred hhceEEeEcccccHHHHHhhccccccccccccccccccccccccc
Q 040332 1091 VRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKS 1135 (1210)
Q Consensus 1091 ~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 1135 (1210)
++|-.|++++|..++.-.. ..+..|+.|++|+++.|-.
T Consensus 313 p~l~~LDLSD~v~l~~~~~-------~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCF-------QEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred CceeeeccccccccCchHH-------HHHHhcchheeeehhhhcC
Confidence 5566666666555433211 1244555566666655543
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.67 E-value=0.0004 Score=87.34 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=94.8
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEE-EEecC-------CcC
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK----IFDQVVF-AEVSQ-------SQD 218 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~w-v~vs~-------~~~ 218 (1210)
.....++||+.++.+++..|......-+.++|.+|+||||+|+.++++..... ..+..+| +.++. ...
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge 263 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE 263 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH
Confidence 34567899999999999998866666777999999999999999999864321 1233444 33322 112
Q ss_pred HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc---------chhhhcccCCCCCCCeEEEEeeCchhhh---
Q 040332 219 IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL---------DLRVVGIPHGDDHRGCKILLTARSLDVL--- 286 (1210)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~---------~~~~~~~~~~~~~~gs~iivTtR~~~v~--- 286 (1210)
.++-++.+++.+.. .+++.+|++|++.... +...+..|....+ .-++|-||...+..
T Consensus 264 ~e~~lk~ii~e~~~----------~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e~~~~~ 332 (852)
T TIGR03345 264 FENRLKSVIDEVKA----------SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAEYKKYF 332 (852)
T ss_pred HHHHHHHHHHHHHh----------cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHHHhhhh
Confidence 33444555554421 2468899999986431 1111332322222 34566665543221
Q ss_pred ---hhcCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 287 ---SRKMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 287 ---~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
.........+.+++++.++..++++...
T Consensus 333 ~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 333 EKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred hccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 1112234589999999999999975544
No 129
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.66 E-value=0.00025 Score=82.35 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=93.3
Q ss_pred ccCcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCC---CCeEEEEEe
Q 040332 150 SKDYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKI---FDQVVFAEV 213 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~v 213 (1210)
.....++.|.+..++++...+. . ...+-+.++|++|+|||++|+++++....... +....|+.+
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 3445667789999888877653 1 23466899999999999999999998753211 123445554
Q ss_pred cCCc-------CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc---------ch-----hhhcccCCC--C
Q 040332 214 SQSQ-------DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL---------DL-----RVVGIPHGD--D 270 (1210)
Q Consensus 214 s~~~-------~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~---------~~-----~~~~~~~~~--~ 270 (1210)
+... .....++.+.+..... ...+++.+|+||+++... +. ..+...+.. .
T Consensus 258 ~~~eLl~kyvGete~~ir~iF~~Ar~~-------a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRLIFQRAREK-------ASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred cchhhcccccchHHHHHHHHHHHHHHH-------hhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 3221 1112222222221100 013578999999997431 11 122222221 1
Q ss_pred CCCeEEEEeeCchhhhhhcC---CC-cceeeecCCCHHHHHHHHHHHhCC
Q 040332 271 HRGCKILLTARSLDVLSRKM---DS-QQNFAVGILKEVEAWSLFKKMAGD 316 (1210)
Q Consensus 271 ~~gs~iivTtR~~~v~~~~~---~~-~~~~~l~~L~~~~~~~lf~~~~~~ 316 (1210)
..+..||.||.......... +. ...+.++..+.++..++|..+...
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 23455666776554432211 11 346899999999999999988753
No 130
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=4.2e-05 Score=56.18 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=18.9
Q ss_pred cceEEEecCcccccCCccccCCCCCcEEEecCccCCC
Q 040332 551 QVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD 587 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~ 587 (1210)
+|++|++++|.++++|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555555555555555555554443
No 131
>PF14516 AAA_35: AAA-like domain
Probab=97.63 E-value=0.0017 Score=72.81 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=118.3
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-----cCHHHHH--
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-----QDIRKIQ-- 223 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~-- 223 (1210)
.+.+.+++|...-+++.+.+.+++ ..+.|.|+-.+|||+|...+.+..+.+ .+. .+++++... .+....+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHH
Confidence 456778899877778888886543 689999999999999999999888754 243 457776542 2344444
Q ss_pred --HHHHHHhCCCcc-------cCCcccc------------cCccEEEEEeCCCCccc---h-hhhcccC----C------
Q 040332 224 --GEIADKLGLKFH-------EESEPGR------------EEKKILVILDNIWENLD---L-RVVGIPH----G------ 268 (1210)
Q Consensus 224 --~~i~~~l~~~~~-------~~~~~~~------------~~kr~LlvlDdv~~~~~---~-~~~~~~~----~------ 268 (1210)
..|.++++.... ....... .+++.+|++|+|+..-. + +++...+ .
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 445555554321 0001001 57899999999975421 1 1111111 0
Q ss_pred CCCCCeEEEEee-Cchhhhh---hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 269 DDHRGCKILLTA-RSLDVLS---RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 269 ~~~~gs~iivTt-R~~~v~~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
.-.+=+=|++.+ +...... ........++|++++.+|...|..++-... . ....++|....||+|.-+..+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-~----~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-S----QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-C----HHHHHHHHHHHCCCHHHHHHH
Confidence 001111122222 2111111 112223478999999999999998774321 1 122789999999999999999
Q ss_pred HHHHHc
Q 040332 345 ARALRN 350 (1210)
Q Consensus 345 ~~~l~~ 350 (1210)
+..+..
T Consensus 240 ~~~l~~ 245 (331)
T PF14516_consen 240 CYLLVE 245 (331)
T ss_pred HHHHHH
Confidence 999975
No 132
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.62 E-value=1.1e-05 Score=94.19 Aligned_cols=131 Identities=31% Similarity=0.395 Sum_probs=99.4
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEec
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDL 625 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 625 (1210)
+..++.|..|++.+|.|..+...+..+.+|++|++++|.|.....+..+..|+.|++++|.+..++ .+..+++|+.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 467888999999999998887768889999999999999999888888888999999999888776 3666889999999
Q ss_pred CCCCCCCccCh-hhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCC
Q 040332 626 RDCSKLEVIPP-HILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC 688 (1210)
Q Consensus 626 ~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 688 (1210)
++| .+..+.. . ...+.+|+.+.+.+|.+. ....+..+..+..+++..|.+..
T Consensus 170 ~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~---------~i~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 170 SYN-RIVDIENDE-LSELISLEELDLGGNSIR---------EIEGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred Ccc-hhhhhhhhh-hhhccchHHHhccCCchh---------cccchHHHHHHHHhhccccccee
Confidence 988 6666665 2 377888888888887663 22333344444444555555443
No 133
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.61 E-value=7.4e-06 Score=95.68 Aligned_cols=133 Identities=26% Similarity=0.310 Sum_probs=107.6
Q ss_pred cCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCC-CCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 548 RMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISG-IGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 548 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~-i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
.+..+..+.+..+.+.+.-..++.+++|.+|++.+|.+..... +..+.+|++|++++|.|..+. .+..++.|+.|+++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 4556666668888888766668899999999999999999777 999999999999999999887 47888889999999
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCC
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
+| .+..++. +..++.|+.+++++|.+...... . +..+.+++.+.+.+|.+..+..
T Consensus 149 ~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~------~-~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 149 GN-LISDISG--LESLKSLKLLDLSYNRIVDIEND------E-LSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred cC-cchhccC--CccchhhhcccCCcchhhhhhhh------h-hhhccchHHHhccCCchhcccc
Confidence 98 7888876 67799999999999877321100 1 5778888888888888776543
No 134
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00085 Score=80.84 Aligned_cols=188 Identities=14% Similarity=0.147 Sum_probs=113.2
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCeEE
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDK--------------------IFDQVV 209 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~ 209 (1210)
....+++|.+.....+.+++..++. +.+-++|..|+||||+|+.+++..-... ++|. +
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~-~ 91 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV-F 91 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe-e
Confidence 3567889999999999999887665 5668999999999999999998753211 2222 2
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEE-EEeeCchhhh
Q 040332 210 FAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKI-LLTARSLDVL 286 (1210)
Q Consensus 210 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~i-ivTtR~~~v~ 286 (1210)
.+.......+.++ +++.+.+..... .+++-++|+|+++.. ...+.+...+-.....+.+ ++||....+.
T Consensus 92 eid~~s~~~v~~i-r~l~~~~~~~p~-------~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 92 EIDGASNTGVDDI-RELRENVKYLPS-------RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred eeeccCccCHHHH-HHHHHHHHhccc-------cCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 2332223333332 444444321110 345557889998754 3344444333222234444 4566555554
Q ss_pred hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc-hHHHHHHHHH
Q 040332 287 SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP-VSIVTVARAL 348 (1210)
Q Consensus 287 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l 348 (1210)
.........+++.+++.++....+...+...... --.+....|++.++|.. .|+..+-..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4333445678999999999888877765422111 11345677888888854 4555544433
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0014 Score=78.12 Aligned_cols=182 Identities=13% Similarity=0.156 Sum_probs=112.7
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc--------------------CCCCeEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD--------------------KIFDQVVF 210 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~w 210 (1210)
...+++|.+..++.+..++..+.. +.+-++|+.|+||||+|+.+++..-.. .++|. ++
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~~ 92 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-IE 92 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-EE
Confidence 567888999999999999986654 468899999999999999999876421 12332 33
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEee-Cchhhhh
Q 040332 211 AEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTA-RSLDVLS 287 (1210)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTt-R~~~v~~ 287 (1210)
+.......+.++. ++.+.+.... ..+++-++|+|++... ..++.+...+......+.+|++| ....+..
T Consensus 93 idgas~~~vddIr-~l~e~~~~~p-------~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 93 IDGASNTSVQDVR-QIKEEIMFPP-------ASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred ecCcccCCHHHHH-HHHHHHHhch-------hcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 4333223344443 3333321111 0345568889998755 34555555544333455555544 4444433
Q ss_pred hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHH
Q 040332 288 RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVT 343 (1210)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 343 (1210)
........+++.+++.++-.+.+.+.+..... .--.+.+..|++.++|.+-.+..
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22334557899999999988888777642221 11235567788899997754433
No 136
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.59 E-value=8.4e-05 Score=54.58 Aligned_cols=39 Identities=33% Similarity=0.401 Sum_probs=20.1
Q ss_pred CCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccC
Q 040332 596 KLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIP 635 (1210)
Q Consensus 596 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p 635 (1210)
+|++|++++|+++.+|..+++|++|++|++++| .+.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 455555555555555555555555555555555 444443
No 137
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.56 E-value=0.00046 Score=74.91 Aligned_cols=148 Identities=13% Similarity=0.084 Sum_probs=79.0
Q ss_pred ccccccHHHHHHHH---HHhC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC
Q 040332 154 EAFESRMPTLRSIL---SALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD 218 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~---~~l~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 218 (1210)
..++|.+..++++. .+.. .+....+.++|++|+||||+|+.+++.......-....++.++...-
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 35677777765554 3331 12456788999999999999999998753221111222333322110
Q ss_pred -------HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc----------cchhhhcccCCCCCCCeEEEEeeC
Q 040332 219 -------IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN----------LDLRVVGIPHGDDHRGCKILLTAR 281 (1210)
Q Consensus 219 -------~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~----------~~~~~~~~~~~~~~~gs~iivTtR 281 (1210)
.....+++++.. ..-+|++|++... +..+.+...+........+|+++.
T Consensus 86 ~~~~~g~~~~~~~~~~~~a--------------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 86 VGEYIGHTAQKTREVIKKA--------------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred hhhhccchHHHHHHHHHhc--------------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 011112222211 1238899999752 223334433333333445555554
Q ss_pred chhhhh------hcCCC-cceeeecCCCHHHHHHHHHHHhC
Q 040332 282 SLDVLS------RKMDS-QQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 282 ~~~v~~------~~~~~-~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
...... ..... ...+.+++++.++-.+++.+.+.
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 332210 00111 24688899999999988887764
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.56 E-value=0.00061 Score=85.17 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=91.6
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC---CC-CeEEEE-EecC-------CcCH
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK---IF-DQVVFA-EVSQ-------SQDI 219 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---~F-~~~~wv-~vs~-------~~~~ 219 (1210)
....++||++++++++..|......-+.++|.+|+|||++|+.+++...... .+ +..+|. +++. ....
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~ 259 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF 259 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchH
Confidence 4457889999999999998866666778999999999999999999864321 11 344443 3211 1123
Q ss_pred HHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc----------chhhhcccCCCCCCCeEEEEeeCchhh----
Q 040332 220 RKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL----------DLRVVGIPHGDDHRGCKILLTARSLDV---- 285 (1210)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~----------~~~~~~~~~~~~~~gs~iivTtR~~~v---- 285 (1210)
++-++.+.+.+. ..++.+|++|++.... +...+..+....+ .-++|-+|...+.
T Consensus 260 e~~l~~i~~~~~-----------~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~~~~ 327 (731)
T TIGR02639 260 EERLKAVVSEIE-----------KEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYKNHF 327 (731)
T ss_pred HHHHHHHHHHHh-----------ccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHHHHh
Confidence 344555555442 2347899999986321 1122222222222 2345544443221
Q ss_pred h--hhcCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 286 L--SRKMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 286 ~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
. .........+.+++++.++..++++...
T Consensus 328 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 328 EKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 0111223578999999999999998655
No 139
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.55 E-value=0.0008 Score=77.14 Aligned_cols=133 Identities=18% Similarity=0.186 Sum_probs=88.9
Q ss_pred ccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc-CH---HHHHHHHHHHhCCC
Q 040332 158 SRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ-DI---RKIQGEIADKLGLK 233 (1210)
Q Consensus 158 gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~---~~~~~~i~~~l~~~ 233 (1210)
.|.....++++.+..... ++.|.|+-++||||+++.+....... .+++..-+.. +. .+.+......-
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~~~~~~--- 91 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRAYIELK--- 91 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHHHHHhh---
Confidence 344556666666653333 99999999999999996666554322 5555433322 22 22222222221
Q ss_pred cccCCcccccCccEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhh-----hhcCCCcceeeecCCCHHHHHH
Q 040332 234 FHEESEPGREEKKILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDVL-----SRKMDSQQNFAVGILKEVEAWS 308 (1210)
Q Consensus 234 ~~~~~~~~~~~kr~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~-----~~~~~~~~~~~l~~L~~~~~~~ 308 (1210)
..++..|+||.|.....|+.....+.+.++. +|++|+-+.... ....|....+.+.||+-.|...
T Consensus 92 ---------~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 92 ---------EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ---------ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 1267899999999999998877777776666 899988875543 2345666789999999988765
Q ss_pred H
Q 040332 309 L 309 (1210)
Q Consensus 309 l 309 (1210)
+
T Consensus 162 ~ 162 (398)
T COG1373 162 L 162 (398)
T ss_pred h
Confidence 4
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.54 E-value=0.00051 Score=75.04 Aligned_cols=132 Identities=13% Similarity=0.111 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCC
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWE 256 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~ 256 (1210)
-+.++|.+|+||||+|+.+++...........-|+.++.. ++...+ .+...........+-..-+|++|++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~----~l~~~~---~g~~~~~~~~~~~~a~~gvL~iDEi~~ 132 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD----DLVGQY---IGHTAPKTKEILKRAMGGVLFIDEAYY 132 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH----HHhHhh---cccchHHHHHHHHHccCcEEEEechhh
Confidence 6889999999999999988877643322222234444421 111111 010000000000011235888999862
Q ss_pred c-----------cchhhhcccCCCCCCCeEEEEeeCchhhhhh-cC------CCcceeeecCCCHHHHHHHHHHHhC
Q 040332 257 N-----------LDLRVVGIPHGDDHRGCKILLTARSLDVLSR-KM------DSQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 257 ~-----------~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~-~~------~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
. +.++.+...+.....+.+||+++........ .. -....+++++++.+|-.+++...+.
T Consensus 133 L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 133 LYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred hccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 2 2233444444444456677777654332110 00 1134689999999999999887764
No 141
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=1.6e-05 Score=96.11 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=55.6
Q ss_pred cCCcceEEeecCCCccccccchhhhhcccccEEEEecc-ccccceeccccccccccccccccccceeecccCcccccccC
Q 040332 819 EKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGC-PVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCT 897 (1210)
Q Consensus 819 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~-~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~ 897 (1210)
.++|+.|.+.+|..+............++|+.|++.+| ......... .......+++|+.|+++.|..+.+...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL-----LLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH-----hhhhhhhcCCcCccchhhhhccCchhH
Confidence 37788888888887776332344567888888888874 222111100 011223457777777777766554432
Q ss_pred CCcccccCCCcceeeeecCCCccc
Q 040332 898 GDVNIIEFPSLKELRISRCPKFMV 921 (1210)
Q Consensus 898 ~~~~~~~~~sL~~L~i~~C~~L~~ 921 (1210)
... ...+|+|+.|.+.+|+.++.
T Consensus 262 ~~l-~~~c~~L~~L~l~~c~~lt~ 284 (482)
T KOG1947|consen 262 SAL-ASRCPNLETLSLSNCSNLTD 284 (482)
T ss_pred HHH-HhhCCCcceEccCCCCccch
Confidence 211 12266777777777766444
No 142
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.53 E-value=0.00016 Score=81.44 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=72.1
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHH-hCC
Q 040332 154 EAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADK-LGL 232 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~ 232 (1210)
..+++.++.++.++..+... +.|.++|++|+|||++|+.+++.......|+.+.||++++..+..+.+..+.-. .+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy 252 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGF 252 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCe
Confidence 45667888999999988643 577889999999999999999988766678899999999988877765433110 010
Q ss_pred CcccCC-------cccccCccEEEEEeCCCCc
Q 040332 233 KFHEES-------EPGREEKKILVILDNIWEN 257 (1210)
Q Consensus 233 ~~~~~~-------~~~~~~kr~LlvlDdv~~~ 257 (1210)
...... .....++++++|+|++...
T Consensus 253 ~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 000000 0001357899999999765
No 143
>CHL00181 cbbX CbbX; Provisional
Probab=97.51 E-value=0.00065 Score=74.12 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIW 255 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~ 255 (1210)
..+.++|.+|+||||+|+.+++.......-...-|+.++.. ++......+ ..........+...-+|++|++.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~l~~~~~g~---~~~~~~~~l~~a~ggVLfIDE~~ 132 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----DLVGQYIGH---TAPKTKEVLKKAMGGVLFIDEAY 132 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----HHHHHHhcc---chHHHHHHHHHccCCEEEEEccc
Confidence 45888999999999999999887543222122224544421 221111100 00000000001122488999986
Q ss_pred Cc-----------cchhhhcccCCCCCCCeEEEEeeCchhhhhh-------cCCCcceeeecCCCHHHHHHHHHHHhC
Q 040332 256 EN-----------LDLRVVGIPHGDDHRGCKILLTARSLDVLSR-------KMDSQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 256 ~~-----------~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
.. +..+.+...+.....+.+||+++....+... ..-....+.+++++.+|..+++.+.+.
T Consensus 133 ~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 133 YLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 42 1223333334444456677777764433110 011134688999999998888877764
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.50 E-value=0.00053 Score=79.90 Aligned_cols=166 Identities=15% Similarity=0.105 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcc-cccCccEEEEEeCC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEP-GREEKKILVILDNI 254 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~kr~LlvlDdv 254 (1210)
..+.|+|..|+|||+|++++++.......-..+++++. .++...+...++......... ..-...-+||+||+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDi 215 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDV 215 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecc
Confidence 56899999999999999999997654322234556543 445555555543211000000 00123348999999
Q ss_pred CCcc---ch-hhhcccCCC-CCCCeEEEEeeCchh---------hhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCC-
Q 040332 255 WENL---DL-RVVGIPHGD-DHRGCKILLTARSLD---------VLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIE- 319 (1210)
Q Consensus 255 ~~~~---~~-~~~~~~~~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~- 319 (1210)
.... .+ +.+...+.. ...|..||+|+.... +.+ .....-.+.+++++.++-.+++.+++.....
T Consensus 216 q~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S-R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~ 294 (450)
T PRK14087 216 QFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT-RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK 294 (450)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH-HHhCCceeccCCcCHHHHHHHHHHHHHhcCCC
Confidence 6432 22 222222211 123446888866432 111 2334457889999999999999998853211
Q ss_pred CchHHHHHHHHHHHhCCcchHHHHHHHHH
Q 040332 320 GSEFQLVAREVEKECAGLPVSIVTVARAL 348 (1210)
Q Consensus 320 ~~~~~~~~~~i~~~c~glPlai~~~~~~l 348 (1210)
..--+++..-|++.++|.|-.+..+...+
T Consensus 295 ~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 295 QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 12235678889999999987776655444
No 145
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.003 Score=69.80 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=111.8
Q ss_pred cccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccC-------------CCCeEEEEEec---C
Q 040332 153 YEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDK-------------IFDQVVFAEVS---Q 215 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~-------------~F~~~~wv~vs---~ 215 (1210)
..+++|.+..++.+...+..++. +..-++|..|+||+++|..+++..-... .++...|+.-. +
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 35678999999999999987764 7999999999999999999988753221 12233455321 0
Q ss_pred C--cC-----------------HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCe
Q 040332 216 S--QD-----------------IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGC 274 (1210)
Q Consensus 216 ~--~~-----------------~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs 274 (1210)
. .+ ..+-.++|.+.+..... .+++-++|+|+++.. .....+...+-.-.+..
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~-------~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~ 155 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPL-------EAPRKVVVIEDAETMNEAAANALLKTLEEPGNGT 155 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcc-------cCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCe
Confidence 0 00 01122344443322211 456678889998765 33333332221111344
Q ss_pred EEEEeeCchhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 275 KILLTARSLDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 275 ~iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
-|++|++...+..........+.+.+++.++..+.+.+....... ......++..++|.|..+...
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHH
Confidence 455665555555444555678999999999999999887532111 111357899999999766543
No 146
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.42 E-value=0.0075 Score=62.14 Aligned_cols=121 Identities=11% Similarity=0.158 Sum_probs=74.7
Q ss_pred ccCcccccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHH
Q 040332 150 SKDYEAFESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGE 225 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 225 (1210)
......++|.+..++.+++-.. .....-+-+||..|.|||++++++.+....+. =..+-|.-.+-.++.+++..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~~~ 100 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELLDL 100 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHHHH
Confidence 4456678899998888875443 44566788899999999999999999887543 11223322233455555554
Q ss_pred HHHHhCCCcccCCcccccCccEEEEEeCCCC---ccchhhhcccCCCC---CC-CeEEEEeeCchhhh
Q 040332 226 IADKLGLKFHEESEPGREEKKILVILDNIWE---NLDLRVVGIPHGDD---HR-GCKILLTARSLDVL 286 (1210)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~---~~~~~~~~~~~~~~---~~-gs~iivTtR~~~v~ 286 (1210)
+.. ...||+|.+||..= +.....++..+..+ .+ ...|-+||..+...
T Consensus 101 l~~--------------~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 101 LRD--------------RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred Hhc--------------CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 442 56799999999852 23445554443221 12 33344455444443
No 147
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0049 Score=68.55 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEEEEEec---CCcCHHHHHHHHHHHhCC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDK-------------------IFDQVVFAEVS---QSQDIRKIQGEIADKLGL 232 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs---~~~~~~~~~~~i~~~l~~ 232 (1210)
...+-++|+.|+||||+|..+++..-.+. ..+...|+.-. +...++.+ +++.+.+..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~i-R~l~~~~~~ 100 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQV-RELVSFVVQ 100 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHH-HHHHHHHhh
Confidence 45688999999999999999998764321 11223444322 22334433 345555433
Q ss_pred CcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCch-hhhhhcCCCcceeeecCCCHHHHHHH
Q 040332 233 KFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSL-DVLSRKMDSQQNFAVGILKEVEAWSL 309 (1210)
Q Consensus 233 ~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~l 309 (1210)
... .+++-++|+|+++.. +....+...+-.-..++.+|+||.+. .+..........+.+.+++.+++.+.
T Consensus 101 ~~~-------~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 101 TAQ-------LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred ccc-------cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 221 233445567999865 34444433332222456666666654 44433344566899999999999988
Q ss_pred HHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 310 FKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 310 f~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
+...... . ..+.+..++..++|.|..+..+
T Consensus 174 L~~~~~~-~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 174 LQQALPE-S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhccc-C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 8776421 1 1233557789999999755543
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.38 E-value=0.00099 Score=84.36 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=89.9
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC---CC-CeEEEE-EecC-------CcCHH
Q 040332 153 YEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK---IF-DQVVFA-EVSQ-------SQDIR 220 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---~F-~~~~wv-~vs~-------~~~~~ 220 (1210)
...++||+++++++++.|......-+.++|.+|+|||++|+.++....... .. +..+|. +++. ....+
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e 257 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFE 257 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHH
Confidence 456889999999999999865555667999999999999999998864221 01 334443 3211 11223
Q ss_pred HHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc---------chhhhcccCCCCCCCeEEEEeeCchhhhh----
Q 040332 221 KIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL---------DLRVVGIPHGDDHRGCKILLTARSLDVLS---- 287 (1210)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~---------~~~~~~~~~~~~~~gs~iivTtR~~~v~~---- 287 (1210)
+-++.+++.+. ..++.+|++|++.... +...+..+....+ .-++|.+|...+...
T Consensus 258 ~rl~~i~~~~~-----------~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 258 ERLKRIFDEIQ-----------ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred HHHHHHHHHHH-----------hcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhc
Confidence 34445554442 3457899999985221 1122222222222 245555555443211
Q ss_pred --hcCCCcceeeecCCCHHHHHHHHHHH
Q 040332 288 --RKMDSQQNFAVGILKEVEAWSLFKKM 313 (1210)
Q Consensus 288 --~~~~~~~~~~l~~L~~~~~~~lf~~~ 313 (1210)
........+.++..+.++..++++..
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 11223456888999999988887654
No 149
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.38 E-value=3.3e-05 Score=93.52 Aligned_cols=141 Identities=21% Similarity=0.239 Sum_probs=72.8
Q ss_pred cCcCcccEEEEeccccccc--cCCCCccccCccEEEEcc---CCCcceecchhHHhhh-hhceEEeEcccccHHHHHhhc
Q 040332 1038 SNMNNLVILHVIRCNNLIN--LVPSSLSFQNLTTLKVSY---CKGLMKVLTSSIAKSL-VRLKEMRVSECNMITEIVLAV 1111 (1210)
Q Consensus 1038 ~~l~~L~~L~l~~c~~L~~--l~~~~~~l~~L~~L~i~~---c~~L~~l~~~~~~~~l-~sL~~L~i~~c~~l~~l~~~~ 1111 (1210)
..+++|++|+|++|..+++ +.....++++|+.|.+.. |+.++.+......... ..+..+.+.+|++++.+....
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~ 371 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSY 371 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhh
Confidence 3456688888888887643 111223455555544433 3445544211111111 156777777777776664211
Q ss_pred ccccccccccccccc-cccccccccc-cccccCCccccCCcccEEeeccCCCccccCCCC--cCCCceeEEEeccccccc
Q 040332 1112 VDDAVDEIIVFSELK-DLELCELKSM-TSFCSGHCAFKFPSLERILVNDCPSMKIFSGGE--LSTPKLLKVQLDEFNKEL 1187 (1210)
Q Consensus 1112 ~~~~~~~~~~~~~L~-~L~l~~c~~L-~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~--~~~~~L~~l~i~~C~~~~ 1187 (1210)
.. ..... .+.+.+|+.| .++..... .+.+++.|.++.|...+---... ..+.+++.+.+.+|+...
T Consensus 372 -------~~-~~~~~~~~~l~gc~~l~~~l~~~~~--~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 372 -------CG-ISDLGLELSLRGCPNLTESLELRLC--RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred -------hh-ccCcchHHHhcCCcccchHHHHHhc--cCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 11 22222 4667777777 33332222 22447888888887654322111 115667777777765543
Q ss_pred c
Q 040332 1188 W 1188 (1210)
Q Consensus 1188 ~ 1188 (1210)
.
T Consensus 442 ~ 442 (482)
T KOG1947|consen 442 L 442 (482)
T ss_pred c
Confidence 3
No 150
>PRK06620 hypothetical protein; Validated
Probab=97.38 E-value=0.00076 Score=70.16 Aligned_cols=131 Identities=16% Similarity=-0.033 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIW 255 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~ 255 (1210)
+.+.|+|++|+|||+|++.+++.... .++. ..+... +. ....-++++||+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~~----~~----------------~~~~d~lliDdi~ 95 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFNE----EI----------------LEKYNAFIIEDIE 95 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhch----hH----------------HhcCCEEEEeccc
Confidence 67999999999999999998776431 1221 111000 00 1122468889997
Q ss_pred Cccc--hhhhcccCCCCCCCeEEEEeeCchhhh------hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHH
Q 040332 256 ENLD--LRVVGIPHGDDHRGCKILLTARSLDVL------SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVA 327 (1210)
Q Consensus 256 ~~~~--~~~~~~~~~~~~~gs~iivTtR~~~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~ 327 (1210)
...+ +-.+...+. ..|..||+|++..... ...+....++++++++.++-.+++.+.+.... -.--+++.
T Consensus 96 ~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~-l~l~~ev~ 172 (214)
T PRK06620 96 NWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS-VTISRQII 172 (214)
T ss_pred cchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-CCCCHHHH
Confidence 4321 111111111 3466899998753321 11233445799999999998888887764211 11124566
Q ss_pred HHHHHHhCCcc
Q 040332 328 REVEKECAGLP 338 (1210)
Q Consensus 328 ~~i~~~c~glP 338 (1210)
+-|++.+.|--
T Consensus 173 ~~L~~~~~~d~ 183 (214)
T PRK06620 173 DFLLVNLPREY 183 (214)
T ss_pred HHHHHHccCCH
Confidence 67777776644
No 151
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.37 E-value=0.00077 Score=70.56 Aligned_cols=160 Identities=19% Similarity=0.120 Sum_probs=85.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNI 254 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv 254 (1210)
...+.|+|..|+|||.|.+++++.......=..++|++. .+....+...+....... -...-..-=+|++||+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~~~~~-~~~~~~~~DlL~iDDi 106 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRDGEIEE-FKDRLRSADLLIIDDI 106 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHTTSHHH-HHHHHCTSSEEEEETG
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHcccchh-hhhhhhcCCEEEEecc
Confidence 356899999999999999999998765422234667743 344444444432210000 0000112237899999
Q ss_pred CCc---cchhh-hcccCCC-CCCCeEEEEeeCchhhh-h-------hcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCc
Q 040332 255 WEN---LDLRV-VGIPHGD-DHRGCKILLTARSLDVL-S-------RKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGS 321 (1210)
Q Consensus 255 ~~~---~~~~~-~~~~~~~-~~~gs~iivTtR~~~v~-~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 321 (1210)
+.. ..|+. +...+.. ...|-+||+|++...-. . ......-.+++++++.++-.+++.+.+....- .
T Consensus 107 ~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~-~ 185 (219)
T PF00308_consen 107 QFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI-E 185 (219)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---
T ss_pred hhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-C
Confidence 754 22322 1111110 12466899999653221 0 12334457999999999999999988852111 1
Q ss_pred hHHHHHHHHHHHhCCcchHHH
Q 040332 322 EFQLVAREVEKECAGLPVSIV 342 (1210)
Q Consensus 322 ~~~~~~~~i~~~c~glPlai~ 342 (1210)
--+++++-|++.+.+..-.+.
T Consensus 186 l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 186 LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp S-HHHHHHHHHHTTSSHHHHH
T ss_pred CcHHHHHHHHHhhcCCHHHHH
Confidence 224556666776655444333
No 152
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.019 Score=59.59 Aligned_cols=179 Identities=14% Similarity=0.094 Sum_probs=103.3
Q ss_pred ccCcccccccHHHHHHHHHHhC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHH
Q 040332 150 SKDYEAFESRMPTLRSILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQG 224 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 224 (1210)
+....+|+|.+..++.+-=.+. +....-+-++|++|.||||||.-+++...+. +.. +-.....-..-+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k~----tsGp~leK~gDla 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LKI----TSGPALEKPGDLA 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eEe----cccccccChhhHH
Confidence 4457889999998888765554 4557889999999999999999999998765 221 1111111111222
Q ss_pred HHHHHhCCCcccCCcccccCccEEEEEeCCCCcc---------chhhhcccC-CCCCCCeE-----------EEEeeCch
Q 040332 225 EIADKLGLKFHEESEPGREEKKILVILDNIWENL---------DLRVVGIPH-GDDHRGCK-----------ILLTARSL 283 (1210)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~---------~~~~~~~~~-~~~~~gs~-----------iivTtR~~ 283 (1210)
.|+..+. ..=.+.+|.+.... ..+++.... ...++++| |=-|||.-
T Consensus 96 aiLt~Le-------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G 162 (332)
T COG2255 96 AILTNLE-------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG 162 (332)
T ss_pred HHHhcCC-------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc
Confidence 3333331 12245567665331 111111100 11122333 22488875
Q ss_pred hhhhhcC-CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHH
Q 040332 284 DVLSRKM-DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARAL 348 (1210)
Q Consensus 284 ~v~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 348 (1210)
.+....- --..+.+++.-+.+|-.+...+.+..-. -.--++-+.+|+++..|-|--+.-+-+..
T Consensus 163 ~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 163 MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 5432111 1123678999999999999998885111 11124567899999999996444433333
No 153
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.31 E-value=0.00082 Score=72.17 Aligned_cols=155 Identities=16% Similarity=0.204 Sum_probs=101.4
Q ss_pred ccccccHHHHHHHHHHhCCCC---ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHh
Q 040332 154 EAFESRMPTLRSILSALEDPD---VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKL 230 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~---~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 230 (1210)
+.|.+|+..+..+...+.+.. +..|-|+|..|.|||.+.+++.+.... ..+|+++-+.++.+.++..|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 456799999999999887433 345588999999999999999988732 357999999999999999999998
Q ss_pred C-CCcccCCccc-------------------ccCccEEEEEeCCCCccchhhhcccC----C--CCCCCeEEEEeeCchh
Q 040332 231 G-LKFHEESEPG-------------------REEKKILVILDNIWENLDLRVVGIPH----G--DDHRGCKILLTARSLD 284 (1210)
Q Consensus 231 ~-~~~~~~~~~~-------------------~~~kr~LlvlDdv~~~~~~~~~~~~~----~--~~~~gs~iivTtR~~~ 284 (1210)
+ .+.+...... +.++.++||||+++...+.+.+..+. . -..+. -+|+++-..-
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~-i~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPT-IVIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCc-eEEEEecccc
Confidence 5 3322222111 04679999999998765554431110 0 11122 2344433222
Q ss_pred hhhh--cCCCcc--eeeecCCCHHHHHHHHHHHh
Q 040332 285 VLSR--KMDSQQ--NFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 285 v~~~--~~~~~~--~~~l~~L~~~~~~~lf~~~~ 314 (1210)
.... .+++.. ++..+.-+.+|-..++.+.-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 1111 134433 45667788888888876553
No 154
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.0052 Score=68.06 Aligned_cols=208 Identities=13% Similarity=0.103 Sum_probs=122.0
Q ss_pred cCcccccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEI 226 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 226 (1210)
.....++||+.+++.+..|+. ....+.+-|.|-+|.|||.+...|+.+......=.+++++..-.-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 345678899999999999886 3457889999999999999999999887643111245677665555667777777
Q ss_pred HHHh----CCCcccCCcccc-------cCccEEEEEeCCCCccc--hhhhcccCC-CCCCCeEEEEe---------eCch
Q 040332 227 ADKL----GLKFHEESEPGR-------EEKKILVILDNIWENLD--LRVVGIPHG-DDHRGCKILLT---------ARSL 283 (1210)
Q Consensus 227 ~~~l----~~~~~~~~~~~~-------~~kr~LlvlDdv~~~~~--~~~~~~~~~-~~~~gs~iivT---------tR~~ 283 (1210)
...+ .....+.+-... ...-+++|+|.++.-.. -+.+...|- +.-+++|+|+. -|.-
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 7766 111111000010 33578999999875421 111211111 12245665543 1110
Q ss_pred h-hhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHHH
Q 040332 284 D-VLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGS----EFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDWK 358 (1210)
Q Consensus 284 ~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~----~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~ 358 (1210)
. +-....-....+..+|.+.++..+.|..+........ .++-.|++++..-|-+--|+.+.-+++. -.+.+|+
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiE--I~E~e~r 384 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIE--IAEIEKR 384 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHH--HHHHHHh
Confidence 0 0010123345788899999999999998875433333 3333344444444556666666555553 2234444
Q ss_pred HH
Q 040332 359 DA 360 (1210)
Q Consensus 359 ~~ 360 (1210)
..
T Consensus 385 ~~ 386 (529)
T KOG2227|consen 385 KI 386 (529)
T ss_pred hc
Confidence 44
No 155
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.30 E-value=4.7e-05 Score=80.29 Aligned_cols=137 Identities=20% Similarity=0.148 Sum_probs=66.6
Q ss_pred hhcCCcceEEEecCcccc-c----CCccccCCCCCcEEEecCccCCC---------------CCCCCCCCCCcEEEeecC
Q 040332 546 FERMIQVRVINLSYVDLL-S----LPSSLVLLSNLRTLSLYYCKLLD---------------ISGIGDLKKLEFLCLRGC 605 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~-~----lp~~i~~l~~L~~L~L~~~~~~~---------------~~~i~~L~~L~~L~l~~~ 605 (1210)
+.++.+|++||||.|.+. + +-+-+..++.|+.|.|.+|.+.. -..+.+-.+|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 344556777777777654 1 12224456667777777665433 012344455666666666
Q ss_pred CCcccC-----cccCCCCCCCEEecCCCCCCCc----cChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCC
Q 040332 606 DIRQLP-----IEVGELICLKLLDLRDCSKLEV----IPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHL 676 (1210)
Q Consensus 606 ~l~~lp-----~~i~~l~~L~~L~l~~~~~~~~----~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 676 (1210)
++..-+ ..+...+.|+.+.+..| .+.. .-...+..+++|++|++..|.+.. .........+..+++|
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~---egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTL---EGSVALAKALSSWPHL 243 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhh---HHHHHHHHHhcccchh
Confidence 554222 23444455555555554 2211 001114555666666666555421 1111233444455555
Q ss_pred CEEEeeccCC
Q 040332 677 TSLQLRIKDI 686 (1210)
Q Consensus 677 ~~L~l~~~~~ 686 (1210)
+.|+++.+.+
T Consensus 244 ~El~l~dcll 253 (382)
T KOG1909|consen 244 RELNLGDCLL 253 (382)
T ss_pred eeeccccccc
Confidence 5555554433
No 156
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.27 E-value=0.0036 Score=71.49 Aligned_cols=171 Identities=15% Similarity=0.180 Sum_probs=95.6
Q ss_pred ccCcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 150 SKDYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
.....++.|.+..++++.+.+. . ...+-|.++|++|+|||++|+.+++..... | +.+..+.-
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~s~l 215 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVGSEF 215 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEehHHH
Confidence 3345667788888877776552 1 235788999999999999999999976532 3 12211110
Q ss_pred -----cCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc------------c----hhhhcccCC--CCCCC
Q 040332 217 -----QDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL------------D----LRVVGIPHG--DDHRG 273 (1210)
Q Consensus 217 -----~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~------------~----~~~~~~~~~--~~~~g 273 (1210)
......++++..... ...+.+|++|+++... . +..+...+. ....+
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~-----------~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLAR-----------ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHHhcchhHHHHHHHHHHHH-----------hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 001122223322211 4557899999976320 1 111222221 12346
Q ss_pred eEEEEeeCchhhhhhc-C---CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 274 CKILLTARSLDVLSRK-M---DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 274 s~iivTtR~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
..||+||......... . .-...+.++..+.++..++|..+.......++. ...++++...|.-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 6788888865443221 1 123468899999999888888776432211111 1345566665554
No 157
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00088 Score=82.43 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=89.4
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC-C---CCeEEEEE-ecC-------CcCHH
Q 040332 153 YEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK-I---FDQVVFAE-VSQ-------SQDIR 220 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~-vs~-------~~~~~ 220 (1210)
...++||+++++++++.|......-+.++|.+|+|||++|+.+++...... . .++.+|.. .+. ....+
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e 264 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHH
Confidence 456889999999999988765445667899999999999999998753221 1 24555532 110 01222
Q ss_pred HHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc----------cchhhhcccCCCCCCCeEEEEeeCchhhhh---
Q 040332 221 KIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN----------LDLRVVGIPHGDDHRGCKILLTARSLDVLS--- 287 (1210)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~----------~~~~~~~~~~~~~~~gs~iivTtR~~~v~~--- 287 (1210)
.-++.+++.+. +.++.+|++|++... .+...+..++...+ .-+||-+|...+...
T Consensus 265 ~rl~~l~~~l~-----------~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 265 KRFKALLKQLE-----------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred HHHHHHHHHHH-----------hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhh
Confidence 23333443331 234679999998632 12222233333222 345555554433210
Q ss_pred ---hcCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 288 ---RKMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 288 ---~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
........+.+++.+.++..+++....
T Consensus 333 ~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 333 KDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 011223579999999999999987654
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.23 E-value=0.0027 Score=80.30 Aligned_cols=152 Identities=13% Similarity=0.169 Sum_probs=90.4
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCe-EEEEEecCC-------cCH
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKI----FDQ-VVFAEVSQS-------QDI 219 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~-~~wv~vs~~-------~~~ 219 (1210)
....++||+.++.+++..|......-+.++|.+|+|||++|..++........ .+. ++++.++.- ...
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~ 255 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 255 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhh
Confidence 45678999999999999998666667779999999999999999998643211 122 334433321 122
Q ss_pred HHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc---------chhhhcccCCCCCCCeEEEEeeCchhhh----
Q 040332 220 RKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL---------DLRVVGIPHGDDHRGCKILLTARSLDVL---- 286 (1210)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~---------~~~~~~~~~~~~~~gs~iivTtR~~~v~---- 286 (1210)
++-++.+++.+.. .+++.+|++|++.... +...+..|....+ .-++|-+|...+..
T Consensus 256 e~~lk~~~~~~~~----------~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~~~~ 324 (857)
T PRK10865 256 EERLKGVLNDLAK----------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYIE 324 (857)
T ss_pred HHHHHHHHHHHHH----------cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHHHhh
Confidence 3344445444311 2467899999986432 1223333332222 34555555443321
Q ss_pred --hhcCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 287 --SRKMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 287 --~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
.........+.+...+.++..++++...
T Consensus 325 ~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 325 KDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1111122356677778888888886554
No 159
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.22 E-value=0.0013 Score=75.50 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=87.6
Q ss_pred cCcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-
Q 040332 151 KDYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS- 216 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~- 216 (1210)
....++.|.+..++++...+. . ...+-+.++|++|+|||++|+.+++..... | +.+..+.-
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f---i~V~~seL~ 254 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F---LRVVGSELI 254 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E---EEEecchhh
Confidence 445667788888888877663 1 234578899999999999999999976532 3 12221111
Q ss_pred --c--CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc------------c----hhhhcccCC--CCCCCe
Q 040332 217 --Q--DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL------------D----LRVVGIPHG--DDHRGC 274 (1210)
Q Consensus 217 --~--~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~------------~----~~~~~~~~~--~~~~gs 274 (1210)
+ ......+++..... .+.+.+|+||+++... . +-.+...+. ....+.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~-----------~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAE-----------ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hhhcchHHHHHHHHHHHHH-----------hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 0 11122233322211 3456788889875320 0 011111111 112366
Q ss_pred EEEEeeCchhhhhhcC---C-CcceeeecCCCHHHHHHHHHHHhC
Q 040332 275 KILLTARSLDVLSRKM---D-SQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 275 ~iivTtR~~~v~~~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
+||+||.......... + -...+.++..+.++..++|..++.
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 7888888655433211 1 234789999999999999998775
No 160
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.011 Score=65.06 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccC----------------CCCeEEEEEecCC--c---
Q 040332 160 MPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDK----------------IFDQVVFAEVSQS--Q--- 217 (1210)
Q Consensus 160 ~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~----------------~F~~~~wv~vs~~--~--- 217 (1210)
....+.+...+..++. ..+-++|+.|+||+++|..+++..-.+. ...-..||..... .
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 4456667777766554 4688999999999999999987653221 1112344421110 0
Q ss_pred ---CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeC-chhhhhhcCC
Q 040332 218 ---DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTAR-SLDVLSRKMD 291 (1210)
Q Consensus 218 ---~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTtR-~~~v~~~~~~ 291 (1210)
-..+-.+++.+.+..... .+++-++|+|+++... .-..+...+-.-..++.+|++|. ...+......
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~-------~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQ-------YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred cccccHHHHHHHHHHHhhCcc-------cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 112334455554433222 4567788999998652 22333222222223555555555 4555444345
Q ss_pred CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 292 SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 292 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
....+.+.+++.+++.+.+... + .+ ...+..++..++|.|+.+..+
T Consensus 163 RCq~i~~~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 163 RCQRLEFKLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hheEeeCCCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 5678899999999998888653 1 11 223567899999999866543
No 161
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.18 E-value=0.0078 Score=70.16 Aligned_cols=158 Identities=18% Similarity=0.127 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIW 255 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~ 255 (1210)
..+.|+|..|+|||+||+++++....+..=..++|++. .++..++...+....... -...-.+.-+||+||+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNNKMEE-FKEKYRSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcCCHHH-HHHHHHhCCEEEEehhh
Confidence 56899999999999999999998764311123566643 233344444432110000 00001112388999997
Q ss_pred Ccc---ch-hhhcccCCC-CCCCeEEEEeeCchh--hh------hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCch
Q 040332 256 ENL---DL-RVVGIPHGD-DHRGCKILLTARSLD--VL------SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSE 322 (1210)
Q Consensus 256 ~~~---~~-~~~~~~~~~-~~~gs~iivTtR~~~--v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~ 322 (1210)
... .+ +.+...+.. ...|..||+|+.... +. ...+.....+.+++.+.++-.+++.+.+..... .-
T Consensus 210 ~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~-~l 288 (405)
T TIGR00362 210 FLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL-EL 288 (405)
T ss_pred hhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-CC
Confidence 532 11 122211111 113456888776421 11 012333457899999999999999988853221 11
Q ss_pred HHHHHHHHHHHhCCcchHH
Q 040332 323 FQLVAREVEKECAGLPVSI 341 (1210)
Q Consensus 323 ~~~~~~~i~~~c~glPlai 341 (1210)
-+++...|++.+.|..-.+
T Consensus 289 ~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 289 PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred CHHHHHHHHHhcCCCHHHH
Confidence 2466778888888766543
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.17 E-value=0.0027 Score=80.79 Aligned_cols=152 Identities=13% Similarity=0.165 Sum_probs=90.7
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEE-EEecC-------CcCH
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKI----FDQVVF-AEVSQ-------SQDI 219 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~-------~~~~ 219 (1210)
....++||+.++.+++..|......-+.++|.+|+|||++|..++++...... ....+| +.++. ....
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~ 250 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEF 250 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhH
Confidence 34568899999999999997665566779999999999999999988643211 123333 33221 1122
Q ss_pred HHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc---------chhhhcccCCCCCCCeEEEEeeCchhhh----
Q 040332 220 RKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL---------DLRVVGIPHGDDHRGCKILLTARSLDVL---- 286 (1210)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~---------~~~~~~~~~~~~~~gs~iivTtR~~~v~---- 286 (1210)
+.-++.+++.+.. .+++.+|++|++.... +...+..+....+ .-++|-+|.....-
T Consensus 251 e~~l~~~l~~~~~----------~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~~~~ 319 (852)
T TIGR03346 251 EERLKAVLNEVTK----------SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRKYIE 319 (852)
T ss_pred HHHHHHHHHHHHh----------cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHHHhh
Confidence 3334444444310 2468999999987431 1122333332222 23455554443321
Q ss_pred --hhcCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 287 --SRKMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 287 --~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
.........+.++..+.++..+++....
T Consensus 320 ~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 320 KDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1111233468899999999999887654
No 163
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.16 E-value=0.00016 Score=76.45 Aligned_cols=193 Identities=19% Similarity=0.200 Sum_probs=116.2
Q ss_pred hhcCCcceEEEecCcccc----cCCc-------cccCCCCCcEEEecCccCCC--CCC----CCCCCCCcEEEeecCCCc
Q 040332 546 FERMIQVRVINLSYVDLL----SLPS-------SLVLLSNLRTLSLYYCKLLD--ISG----IGDLKKLEFLCLRGCDIR 608 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~----~lp~-------~i~~l~~L~~L~L~~~~~~~--~~~----i~~L~~L~~L~l~~~~l~ 608 (1210)
+.+.+.||.-+++.-.-. .+|+ .+-.+++|++|+||.|-+.. ++. +.++..|++|.+.+|.+.
T Consensus 54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 455567777777664221 3343 34556789999999987655 433 566788888888888765
Q ss_pred cc--------------CcccCCCCCCCEEecCCCCCCCccChh----hhcCCCcccEEEccCCCCccccccccccCcccc
Q 040332 609 QL--------------PIEVGELICLKLLDLRDCSKLEVIPPH----ILSNLSHLEELNIGDNSFYHWEVEVDGVKNASL 670 (1210)
Q Consensus 609 ~l--------------p~~i~~l~~L~~L~l~~~~~~~~~p~~----~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l 670 (1210)
.. ...+++-++||++....| ++.+.+.. .+...+.|+++.+..|.+..-.. ......+
T Consensus 134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~---~al~eal 209 (382)
T KOG1909|consen 134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV---TALAEAL 209 (382)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchh---HHHHHHH
Confidence 21 223455677888887776 66655532 24566788888888776632111 1344567
Q ss_pred ccCCCCCEEEeeccCCCCCCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeeccc-
Q 040332 671 NELKHLTSLQLRIKDINCLPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGL- 749 (1210)
Q Consensus 671 ~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~- 749 (1210)
..+++|+.|++..|.++.-..... ......+++|++|++..|
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~L-------------------------------------akaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVAL-------------------------------------AKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHH-------------------------------------HHHhcccchheeecccccc
Confidence 778888888887776543221100 011122456777777766
Q ss_pred -ccccchhhhhhhhhcccccCcEEEeeCCccc
Q 040332 750 -QEHDVESFANELVKVGSSQLKHLWIEGCHEA 780 (1210)
Q Consensus 750 -~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 780 (1210)
+..+...+...+.. ..|+|+.|.+.+|...
T Consensus 253 l~~~Ga~a~~~al~~-~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 253 LENEGAIAFVDALKE-SAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccHHHHHHHHhc-cCCCCceeccCcchhH
Confidence 22344444444444 3678888888887543
No 164
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0068 Score=67.98 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=89.8
Q ss_pred ccc-cHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCeEEEEEe
Q 040332 156 FES-RMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDK--------------------IFDQVVFAEV 213 (1210)
Q Consensus 156 ~~g-r~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 213 (1210)
++| .+..++.+.+.+..++. ...-++|+.|+||||+|..+.+..-... |.|..+...-
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 445 66777888888776654 5669999999999999999988753221 3343322222
Q ss_pred cCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCc-hhhhhhcC
Q 040332 214 SQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARS-LDVLSRKM 290 (1210)
Q Consensus 214 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~-~~v~~~~~ 290 (1210)
+....++++ +++.+.+..... .+++=++|+|+++.. +....+...+-.-..++.+|++|.+ ..+.....
T Consensus 87 ~~~i~id~i-r~l~~~~~~~~~-------~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 87 GQSIKKDQI-RYLKEEFSKSGV-------ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred cccCCHHHH-HHHHHHHhhCCc-------ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 222333333 344444432111 234556888998755 2334444444333346666666654 44433334
Q ss_pred CCcceeeecCCCHHHHHHHHHHH
Q 040332 291 DSQQNFAVGILKEVEAWSLFKKM 313 (1210)
Q Consensus 291 ~~~~~~~l~~L~~~~~~~lf~~~ 313 (1210)
.....+++.+++.++..+.+...
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 45678999999999988877653
No 165
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.11 E-value=0.0077 Score=64.23 Aligned_cols=182 Identities=19% Similarity=0.168 Sum_probs=105.7
Q ss_pred HHHHHHHHHhC---CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC----eEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 161 PTLRSILSALE---DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD----QVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 161 ~~~~~l~~~l~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
+.++++-+++. ....+-+.|||..|.|||++++++.........=+ .++.|.+...++...+...|+.+++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 33455555554 34567899999999999999999998764331111 377788889999999999999999988
Q ss_pred cccCCcccc----------cCccEEEEEeCCCCcc-----chhhhc---ccCCCCCCCeEEEEeeCchhhhhh----cCC
Q 040332 234 FHEESEPGR----------EEKKILVILDNIWENL-----DLRVVG---IPHGDDHRGCKILLTARSLDVLSR----KMD 291 (1210)
Q Consensus 234 ~~~~~~~~~----------~~kr~LlvlDdv~~~~-----~~~~~~---~~~~~~~~gs~iivTtR~~~v~~~----~~~ 291 (1210)
......... .-+-=+||+|.+.+.- +-..+. ..+.+.-.-+-|.|-|+.-.-+-. ...
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 654433222 3334478899997641 111111 111112223445565654222210 011
Q ss_pred CcceeeecCCCHH-HHHHHHHHHhC----CCCCCchHHHHHHHHHHHhCCcchHHH
Q 040332 292 SQQNFAVGILKEV-EAWSLFKKMAG----DYIEGSEFQLVAREVEKECAGLPVSIV 342 (1210)
Q Consensus 292 ~~~~~~l~~L~~~-~~~~lf~~~~~----~~~~~~~~~~~~~~i~~~c~glPlai~ 342 (1210)
...++.++.-..+ +...|+..... .....-...++++.|...++|+.=-+.
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1234555544433 44555443321 111122346789999999999874443
No 166
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.11 E-value=0.0068 Score=72.46 Aligned_cols=170 Identities=14% Similarity=0.163 Sum_probs=93.0
Q ss_pred cccCcccccccHHHHHHHHHHh---CC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 149 SSKDYEAFESRMPTLRSILSAL---ED---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
+.....+++|.++.++++..++ .. ...+-+-++|++|+|||++|+.+++..... | +.++..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--~-----~~i~~~ 122 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGS 122 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--e-----eeccHH
Confidence 3445667778877766554433 21 224568899999999999999999876532 2 222211
Q ss_pred c-------CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc------------chh----hhcccCC--CCC
Q 040332 217 Q-------DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL------------DLR----VVGIPHG--DDH 271 (1210)
Q Consensus 217 ~-------~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~------------~~~----~~~~~~~--~~~ 271 (1210)
. ....-++.+.+... ...+.+|++||++... .+. .+...+. ...
T Consensus 123 ~~~~~~~g~~~~~l~~~f~~a~-----------~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVEMFVGVGASRVRDLFEQAK-----------KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHHhcccHHHHHHHHHHHH-----------hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 0 00111222222211 3445799999985421 111 1211111 123
Q ss_pred CCeEEEEeeCchhhhhhcC----CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 272 RGCKILLTARSLDVLSRKM----DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 272 ~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
.+..||.||.......... .-...+.++..+.++-.++|..+.......+. .....+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 3556777776544221111 12346889999999989999887753322111 12347788877643
No 167
>PRK10536 hypothetical protein; Provisional
Probab=97.10 E-value=0.0019 Score=67.33 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=43.2
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVF 210 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 210 (1210)
+...+.+|......++.++.+. ..|.+.|.+|.|||+||.++..+.-....|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4556778888888899888664 49999999999999999999986432233555443
No 168
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.07 E-value=0.0045 Score=61.37 Aligned_cols=137 Identities=17% Similarity=0.162 Sum_probs=81.4
Q ss_pred ccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccC------------------CCCeEEEEEecCC--
Q 040332 158 SRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDK------------------IFDQVVFAEVSQS-- 216 (1210)
Q Consensus 158 gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~------------------~F~~~~wv~vs~~-- 216 (1210)
|.+...+.+.+.+..++. ..+-++|..|+||+|+|..+++..-... ...-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 556777778887776664 4689999999999999999998753221 1233455544433
Q ss_pred -cCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh-hhhhcCCC
Q 040332 217 -QDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLD-VLSRKMDS 292 (1210)
Q Consensus 217 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~-v~~~~~~~ 292 (1210)
..++++. ++.+.+..... .+++=++|+||++.. +.+..+...+-....++++|++|++.. +.......
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~-------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR 152 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS-------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR 152 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T-------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT
T ss_pred hhhHHHHH-HHHHHHHHHHh-------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh
Confidence 4454444 77766644332 455668899999865 455555444433345788888877644 43333444
Q ss_pred cceeeecCCC
Q 040332 293 QQNFAVGILK 302 (1210)
Q Consensus 293 ~~~~~l~~L~ 302 (1210)
...+.+.+++
T Consensus 153 c~~i~~~~ls 162 (162)
T PF13177_consen 153 CQVIRFRPLS 162 (162)
T ss_dssp SEEEEE----
T ss_pred ceEEecCCCC
Confidence 5567766653
No 169
>PRK08118 topology modulation protein; Reviewed
Probab=97.07 E-value=0.00035 Score=69.64 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEEE
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSD-KIFDQVVFA 211 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 211 (1210)
+.|.|+|++|+||||||+.+++..... .+||..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 358999999999999999999987654 457888853
No 170
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.06 E-value=0.0059 Score=72.08 Aligned_cols=182 Identities=19% Similarity=0.113 Sum_probs=99.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNI 254 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv 254 (1210)
...+.|+|..|+|||+||+.+++....+..--.++|++.. ++..++...+....... -...-.+.-+||+||+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~dlLiiDDi 220 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNNTMEE-FKEKYRSVDVLLIDDI 220 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcCcHHH-HHHHHhcCCEEEEehh
Confidence 3568999999999999999999998644212335666443 22333333332110000 0000112338999999
Q ss_pred CCc---cch-hhhcccCCC-CCCCeEEEEeeCchh--hh------hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCc
Q 040332 255 WEN---LDL-RVVGIPHGD-DHRGCKILLTARSLD--VL------SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGS 321 (1210)
Q Consensus 255 ~~~---~~~-~~~~~~~~~-~~~gs~iivTtR~~~--v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 321 (1210)
... ..+ +.+...+.. ...|..||+||.... +. .........+++++.+.++-.+++.+.+.... ..
T Consensus 221 ~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~-~~ 299 (450)
T PRK00149 221 QFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG-ID 299 (450)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC-CC
Confidence 643 111 222211110 112445888876532 11 11244445799999999999999999885321 11
Q ss_pred hHHHHHHHHHHHhCCcchHHHHHHHHH-------HcCCChHHHHHHHHHh
Q 040332 322 EFQLVAREVEKECAGLPVSIVTVARAL-------RNNKSLFDWKDALEQL 364 (1210)
Q Consensus 322 ~~~~~~~~i~~~c~glPlai~~~~~~l-------~~~~~~~~w~~~~~~l 364 (1210)
--.++..-|++.++|..-.+.-+-..+ ....+....+++++.+
T Consensus 300 l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 300 LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 124567788888887665433222221 1123566666666654
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.06 E-value=0.0018 Score=62.11 Aligned_cols=65 Identities=22% Similarity=0.199 Sum_probs=41.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc-----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEe
Q 040332 178 LGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ-----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILD 252 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlD 252 (1210)
|.|+|++|+||||+|+.+++.... ..+.++.+... +....+..+..+... ..++.+|++|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISSYAGDSEQKIRDFFKKAKK----------SAKPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTSSTTHHHHHHHHHHHHHHH----------TSTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccccccccccccccccccccc----------cccceeeeec
Confidence 578999999999999999999752 23455443321 223333344433210 1147999999
Q ss_pred CCCCc
Q 040332 253 NIWEN 257 (1210)
Q Consensus 253 dv~~~ 257 (1210)
|++..
T Consensus 66 e~d~l 70 (132)
T PF00004_consen 66 EIDKL 70 (132)
T ss_dssp TGGGT
T ss_pred cchhc
Confidence 98754
No 172
>CHL00176 ftsH cell division protein; Validated
Probab=97.06 E-value=0.0067 Score=73.44 Aligned_cols=165 Identities=16% Similarity=0.229 Sum_probs=91.9
Q ss_pred CcccccccHHHHHHH---HHHhCCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc--
Q 040332 152 DYEAFESRMPTLRSI---LSALEDP---------DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ-- 217 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l---~~~l~~~---------~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-- 217 (1210)
...++.|.++.++++ +..+... ..+-|.++|++|+|||++|+.+++..... |+.++...
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s~f~ 253 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGSEFV 253 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHHHHH
Confidence 345566766655544 4444322 24568999999999999999999876432 22222110
Q ss_pred C-----HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc------------cc----hhhhcccCC--CCCCCe
Q 040332 218 D-----IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN------------LD----LRVVGIPHG--DDHRGC 274 (1210)
Q Consensus 218 ~-----~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~------------~~----~~~~~~~~~--~~~~gs 274 (1210)
. ...-++.+..+.. .....+|++||++.. .. +..+...+. ....+.
T Consensus 254 ~~~~g~~~~~vr~lF~~A~-----------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAK-----------ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHhhhhhHHHHHHHHHHHh-----------cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 0 0011112222111 456789999999632 11 122222221 123456
Q ss_pred EEEEeeCchhhhhhcC---C-CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCC
Q 040332 275 KILLTARSLDVLSRKM---D-SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAG 336 (1210)
Q Consensus 275 ~iivTtR~~~v~~~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g 336 (1210)
.||.||.......... + -...+.++..+.++-.++++.++......+ ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 6777776644332211 1 124688899999999999988875422111 2234677777777
No 173
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.04 E-value=0.0026 Score=80.06 Aligned_cols=47 Identities=26% Similarity=0.327 Sum_probs=38.1
Q ss_pred ccccccHHHHHHHHHHhC------CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 154 EAFESRMPTLRSILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..++|.++.+++|..++. ....+++.++|++|+|||++|+.+++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 446788988888887653 22446899999999999999999999875
No 174
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.04 E-value=0.0033 Score=73.29 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=88.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD-QVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDN 253 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDd 253 (1210)
..-+.|+|..|+|||+||+++++..... +.+ .++|++. .++..++...+.......-...-..+.-+|++||
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDD 202 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDD 202 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEec
Confidence 3469999999999999999999987643 223 4677754 3445555554432110000000012344899999
Q ss_pred CCCc---cch-hhhcccCCC-CCCCeEEEEeeCc-hhhh----hh---cCCCcceeeecCCCHHHHHHHHHHHhCCCCCC
Q 040332 254 IWEN---LDL-RVVGIPHGD-DHRGCKILLTARS-LDVL----SR---KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEG 320 (1210)
Q Consensus 254 v~~~---~~~-~~~~~~~~~-~~~gs~iivTtR~-~~v~----~~---~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 320 (1210)
+... ..+ +.+...+.. ...|..||+||.. ..-. .. .......+++++.+.+.-.+++.+.+.....
T Consensus 203 i~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~- 281 (440)
T PRK14088 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG- 281 (440)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC-
Confidence 9743 111 122111111 1124468888753 2211 11 2333457899999999999999888752211
Q ss_pred chHHHHHHHHHHHhCCcc
Q 040332 321 SEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 321 ~~~~~~~~~i~~~c~glP 338 (1210)
.--.++..-|++.+.|.-
T Consensus 282 ~l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 282 ELPEEVLNFVAENVDDNL 299 (440)
T ss_pred CCCHHHHHHHHhccccCH
Confidence 112456777888777643
No 175
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.022 Score=62.90 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=99.1
Q ss_pred HHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCeEEEEEe--cCCc
Q 040332 161 PTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSDK--------------------IFDQVVFAEV--SQSQ 217 (1210)
Q Consensus 161 ~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v--s~~~ 217 (1210)
.....+.+.+..+. ...+-+.|+.|+||+++|..++...-.+. |-| ..++.- +...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~I 87 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD-FHILEPIDNKDI 87 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEccccCCCC
Confidence 34556666666555 46777999999999999999998753221 112 223321 1222
Q ss_pred CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCc-hhhhhhcCCCcc
Q 040332 218 DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARS-LDVLSRKMDSQQ 294 (1210)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~-~~v~~~~~~~~~ 294 (1210)
.++.+ +++.+.+..... .+++=++|+|+++.. .....+...+-.-..++.+|++|.+ ..+.........
T Consensus 88 ~id~i-R~l~~~~~~~~~-------~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 88 GVDQV-REINEKVSQHAQ-------QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred CHHHH-HHHHHHHhhccc-------cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 33333 345444432222 456667889999865 3344443333222345555555554 455443344567
Q ss_pred eeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHH
Q 040332 295 NFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSI 341 (1210)
Q Consensus 295 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 341 (1210)
.+.+.+++.++..+.+...... . ...+...++.++|.|..+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~--~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSA--E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhcc--C----hHHHHHHHHHcCCCHHHH
Confidence 8999999999999888776421 1 112456678899999643
No 176
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.00016 Score=74.34 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=20.2
Q ss_pred CCCCCcEEEecCccCCCCCC----CCCCCCCcEEEeecCCCc
Q 040332 571 LLSNLRTLSLYYCKLLDISG----IGDLKKLEFLCLRGCDIR 608 (1210)
Q Consensus 571 ~l~~L~~L~L~~~~~~~~~~----i~~L~~L~~L~l~~~~l~ 608 (1210)
.+++++.|||.+|.+.+... +.+|+.|++|+++.|.+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 34556666666666655221 335555666666555443
No 177
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.99 E-value=3.1e-05 Score=88.72 Aligned_cols=107 Identities=26% Similarity=0.252 Sum_probs=77.0
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCC-CCCCcEEEeecCCCcccCcccCCCCCCCEEe
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGD-LKKLEFLCLRGCDIRQLPIEVGELICLKLLD 624 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~-L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 624 (1210)
+.-+.+|+.|+|++|.+.+.- .+..|.+|+.|||++|.+...+.++. -.+|+.|.+++|.++++- +|.+|++|+.||
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccc
Confidence 455677888888888888765 67788888888888888877444331 223888888888887775 588888888888
Q ss_pred cCCCCCCCccCh-hhhcCCCcccEEEccCCCC
Q 040332 625 LRDCSKLEVIPP-HILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 625 l~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~ 655 (1210)
++.| .+..... ..++.|..|+.|++.||++
T Consensus 261 lsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8887 4433221 1156677888888888876
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.98 E-value=0.00044 Score=84.25 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=27.3
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC---CCCCCCCCCCcEEEeecC
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD---ISGIGDLKKLEFLCLRGC 605 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~ 605 (1210)
+.++++|+.||+++++++.+ ..+++|+||++|.+++=.+.. ...+.+|++|++||+|..
T Consensus 169 c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 34444455555555544444 344445555555444443333 233444444444444443
No 179
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.98 E-value=0.01 Score=70.16 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIW 255 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~ 255 (1210)
..+.|+|..|+|||.|++++++.......--.++|++. .++..++...+.....+. -...-.+-=+|||||+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~~~~~-f~~~y~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDGKGDS-FRRRYREMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhccHHH-HHHHhhcCCEEEEehhc
Confidence 45899999999999999999998754211234566643 333333333322110000 00000112278999997
Q ss_pred Cc---cchh-hhcccCCC-CCCCeEEEEeeCch--hhh------hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCch
Q 040332 256 EN---LDLR-VVGIPHGD-DHRGCKILLTARSL--DVL------SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSE 322 (1210)
Q Consensus 256 ~~---~~~~-~~~~~~~~-~~~gs~iivTtR~~--~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~ 322 (1210)
.. +.|+ .+...+.. ...|..|||||+.. .+. ...+...-++++++.+.+.-.+++.+++....- .-
T Consensus 388 ~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l-~l 466 (617)
T PRK14086 388 FLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL-NA 466 (617)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC-CC
Confidence 54 2232 22221111 12355688888762 111 113445568999999999999999988853221 11
Q ss_pred HHHHHHHHHHHhCCcc
Q 040332 323 FQLVAREVEKECAGLP 338 (1210)
Q Consensus 323 ~~~~~~~i~~~c~glP 338 (1210)
-.++..-|++++.+..
T Consensus 467 ~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 467 PPEVLEFIASRISRNI 482 (617)
T ss_pred CHHHHHHHHHhccCCH
Confidence 2456666777666543
No 180
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.97 E-value=0.0015 Score=63.87 Aligned_cols=103 Identities=22% Similarity=0.299 Sum_probs=68.5
Q ss_pred CCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCC-CCCCCEEecCCCCCCCc---cChhhhcCCCcccEE
Q 040332 573 SNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGE-LICLKLLDLRDCSKLEV---IPPHILSNLSHLEEL 648 (1210)
Q Consensus 573 ~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~---~p~~~l~~L~~L~~L 648 (1210)
.+...+||++|.+.....|..+..|.+|.+.+|.|+.+-+.+.. +++|..|.+.+| .+.. +.+ +..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~p--La~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDP--LASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcch--hccCCcccee
Confidence 34567777777777777777777888888888888777665543 456788888776 4433 333 5667788888
Q ss_pred EccCCCCccccccccccCccccccCCCCCEEEee
Q 040332 649 NIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLR 682 (1210)
Q Consensus 649 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 682 (1210)
.+-+|..... ..-....+..+++|+.|++.
T Consensus 119 tll~Npv~~k----~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 119 TLLGNPVEHK----KNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eecCCchhcc----cCceeEEEEecCcceEeehh
Confidence 8887765321 11233466677788887765
No 181
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.97 E-value=0.00021 Score=87.04 Aligned_cols=115 Identities=19% Similarity=0.231 Sum_probs=86.2
Q ss_pred cccchhhhcCCcceEEEecCcccc--cCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccC--cccC
Q 040332 540 SIANNFFERMIQVRVINLSYVDLL--SLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLP--IEVG 615 (1210)
Q Consensus 540 ~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp--~~i~ 615 (1210)
.++..+...++.||.|.+.+-.+. ++-.-..++++|+.||++++++.....++.|++||+|.+++-.+..-+ ..+-
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 344455566888888888886554 233345678999999999999999999999999999999887776543 3678
Q ss_pred CCCCCCEEecCCCCCCCccChh------hhcCCCcccEEEccCCCC
Q 040332 616 ELICLKLLDLRDCSKLEVIPPH------ILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 616 ~l~~L~~L~l~~~~~~~~~p~~------~l~~L~~L~~L~l~~n~~ 655 (1210)
+|++|++||++...... .+.- .-..|++|+.|+.+++..
T Consensus 218 ~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred cccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 89999999999863332 2211 124589999999997765
No 182
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.95 E-value=0.0022 Score=63.75 Aligned_cols=102 Identities=19% Similarity=0.149 Sum_probs=74.1
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHh
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKL 230 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 230 (1210)
....++||.++.++++--.-.+++.+-+.|.||+|+||||=+..+++..-...+=+.+.-..+|....+.-+...|-.-.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA 103 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA 103 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH
Confidence 34567899999999888777899999999999999999999998888775444446677777887766665555443221
Q ss_pred CCCcccCCcccccCccEEEEEeCCCCc
Q 040332 231 GLKFHEESEPGREEKKILVILDNIWEN 257 (1210)
Q Consensus 231 ~~~~~~~~~~~~~~kr~LlvlDdv~~~ 257 (1210)
..... ...++.-.+|||.+++.
T Consensus 104 Q~kv~-----lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 QKKVT-----LPPGRHKIIILDEADSM 125 (333)
T ss_pred Hhhcc-----CCCCceeEEEeeccchh
Confidence 11110 11567778999999876
No 183
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.95 E-value=0.0058 Score=73.31 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=42.4
Q ss_pred ccCcccccccHHHHHHHHHHhCC-----CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 150 SKDYEAFESRMPTLRSILSALED-----PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+....+++|.++.++++..|+.. ...+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45667888999999999998863 2346799999999999999999998754
No 184
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.94 E-value=0.0037 Score=69.04 Aligned_cols=94 Identities=10% Similarity=0.162 Sum_probs=65.8
Q ss_pred HHHHHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe-EEEEEecCC-cCHHHHHHHHHHHhCCCcccCCc
Q 040332 163 LRSILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQ-VVFAEVSQS-QDIRKIQGEIADKLGLKFHEESE 239 (1210)
Q Consensus 163 ~~~l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~ 239 (1210)
..++++.+. -+....+.|+|.+|+|||||++.+++....+ +-+. ++|+.+.+. ..+.++.+.+...+.....+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 345777766 2445677999999999999999999987643 2344 467777654 46678888887766654332222
Q ss_pred ccc----------------cCccEEEEEeCCCCc
Q 040332 240 PGR----------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 240 ~~~----------------~~kr~LlvlDdv~~~ 257 (1210)
..+ .+++.+||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 211 799999999998643
No 185
>PRK08116 hypothetical protein; Validated
Probab=96.93 E-value=0.0013 Score=71.00 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCC-c-ccc-cCccEEEEEe
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEES-E-PGR-EEKKILVILD 252 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~-~~~-~~kr~LlvlD 252 (1210)
..+.++|..|+|||.||.++++....+ -..+++++ ..+++..+............ . ... .+-. |||||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGKEDENEIIRSLVNAD-LLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccccccHHHHHHHhcCCC-EEEEe
Confidence 468999999999999999999998644 34456664 34455555444322111000 0 000 2222 89999
Q ss_pred CCC--Cccchhh--hcccCCC-CCCCeEEEEeeCc
Q 040332 253 NIW--ENLDLRV--VGIPHGD-DHRGCKILLTARS 282 (1210)
Q Consensus 253 dv~--~~~~~~~--~~~~~~~-~~~gs~iivTtR~ 282 (1210)
|+. ...+|.. +...+.. -..|..+||||..
T Consensus 186 Dlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 186 DLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 994 3345532 2221111 1245568999874
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.062 Score=59.17 Aligned_cols=166 Identities=15% Similarity=0.117 Sum_probs=100.7
Q ss_pred HHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEEEEEec---CCc
Q 040332 161 PTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSD-------------------KIFDQVVFAEVS---QSQ 217 (1210)
Q Consensus 161 ~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs---~~~ 217 (1210)
...+++.+.+..++ ...+-++|+.|+||+++|..++...-.. .|-| ..|+.-. +..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I 88 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcC
Confidence 44556666665554 4678899999999999999998765221 1223 3344321 223
Q ss_pred CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE-eeCchhhhhhcCCCcc
Q 040332 218 DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL-TARSLDVLSRKMDSQQ 294 (1210)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TtR~~~v~~~~~~~~~ 294 (1210)
.++.+ +++.+.+..... .+++=.+|+|+++.. .....+...+-.-..++.+|. |++...+.........
T Consensus 89 ~vdqi-R~l~~~~~~~~~-------~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 89 TVEQI-RQCNRLAQESSQ-------LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred CHHHH-HHHHHHHhhCcc-------cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 44444 445444432211 345557888998865 344444333322233455554 4544555554455667
Q ss_pred eeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 295 NFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 295 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
.+.+.+++.+++.+.+..... + .+..+++.++|.|+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQGI---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eEeCCCCCHHHHHHHHHHcCC---c------hHHHHHHHcCCCHHHHHHH
Confidence 899999999999988865421 1 1356788999999876544
No 187
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.83 E-value=8.7e-05 Score=67.29 Aligned_cols=100 Identities=23% Similarity=0.258 Sum_probs=49.1
Q ss_pred ceEEEecCcccccCCc---cccCCCCCcEEEecCccCCC-CCCCCC-CCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 552 VRVINLSYVDLLSLPS---SLVLLSNLRTLSLYYCKLLD-ISGIGD-LKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 552 Lr~L~l~~~~~~~lp~---~i~~l~~L~~L~L~~~~~~~-~~~i~~-L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
+..+||++|.+-.+++ .+...++|...+|++|.+.. |+.|.. .+.+.+|++++|.+..+|.++..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 3344555554443332 23344455555555555555 444332 235555555555555555555555555555555
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCC
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDN 653 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n 653 (1210)
.| .+...|.-+ ..|.+|-.|+..+|
T Consensus 109 ~N-~l~~~p~vi-~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 109 FN-PLNAEPRVI-APLIKLDMLDSPEN 133 (177)
T ss_pred cC-ccccchHHH-HHHHhHHHhcCCCC
Confidence 55 444444432 33555555544444
No 188
>PHA00729 NTP-binding motif containing protein
Probab=96.82 E-value=0.005 Score=63.25 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=66.8
Q ss_pred HHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhcc-----------CCCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 165 SILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSD-----------KIFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 165 ~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-----------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
+++..+...+...|.|.|.+|+||||||..+.++.... .....+.++ +..++...+.......
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fi------d~~~Ll~~L~~a~~~~ 80 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFF------ELPDALEKIQDAIDND 80 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEE------EHHHHHHHHHHHHhcC
Confidence 45555666666789999999999999999999875311 001123333 4555665554433110
Q ss_pred cccCCcccccCccEEEEEeCC--CCc-cchhhhcccCCCCCCCeEEEEeeCchhhhhhcCCCcceeeecCCCHHHHHHHH
Q 040332 234 FHEESEPGREEKKILVILDNI--WEN-LDLRVVGIPHGDDHRGCKILLTARSLDVLSRKMDSQQNFAVGILKEVEAWSLF 310 (1210)
Q Consensus 234 ~~~~~~~~~~~kr~LlvlDdv--~~~-~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf 310 (1210)
. +-=+||+||+ |-. ..|..- .. +-.-.+..........+.+.++++++..+.+
T Consensus 81 ---------~-~~dlLIIDd~G~~~~~~~wh~~-----------~~---~~yf~L~~aLrSR~~l~il~~ls~edL~~~L 136 (226)
T PHA00729 81 ---------Y-RIPLIIFDDAGIWLSKYVWYED-----------YM---KTFYKIYALIRTRVSAVIFTTPSPEDLAFYL 136 (226)
T ss_pred ---------C-CCCEEEEeCCchhhcccchhhh-----------cc---chHHHHHHHHHhhCcEEEEecCCHHHHHHHH
Confidence 0 1127899994 332 224310 00 0000111111223446788888889888888
Q ss_pred HHHh
Q 040332 311 KKMA 314 (1210)
Q Consensus 311 ~~~~ 314 (1210)
+.+.
T Consensus 137 r~Rg 140 (226)
T PHA00729 137 REKG 140 (226)
T ss_pred HhCC
Confidence 7754
No 189
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.81 E-value=0.0071 Score=70.32 Aligned_cols=151 Identities=9% Similarity=0.048 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIW 255 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~ 255 (1210)
..+.|+|..|+|||+||+++++..... .-.+++++. ..+...+...+....... -...-...-++++||+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~~~~~-f~~~~~~~dvLiIDDiq 212 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSGEMQR-FRQFYRNVDALFIEDIE 212 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcchHHH-HHHHcccCCEEEEcchh
Confidence 568899999999999999999987643 233566643 334444444443211000 00001233488899986
Q ss_pred Cccc--h--hhhcccCCC-CCCCeEEEEeeCch-h----hh---hhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCch
Q 040332 256 ENLD--L--RVVGIPHGD-DHRGCKILLTARSL-D----VL---SRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSE 322 (1210)
Q Consensus 256 ~~~~--~--~~~~~~~~~-~~~gs~iivTtR~~-~----v~---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~ 322 (1210)
.... + +.+...+.. ...|-.||+||... . +. .........+.+.+++.++-.+++.+.+.... ..-
T Consensus 213 ~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~-~~l 291 (445)
T PRK12422 213 VFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS-IRI 291 (445)
T ss_pred hhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC-CCC
Confidence 5421 1 222222110 01345688888542 1 11 11234446889999999999999988875321 111
Q ss_pred HHHHHHHHHHHhCC
Q 040332 323 FQLVAREVEKECAG 336 (1210)
Q Consensus 323 ~~~~~~~i~~~c~g 336 (1210)
-.++..-|++.+.|
T Consensus 292 ~~evl~~la~~~~~ 305 (445)
T PRK12422 292 EETALDFLIEALSS 305 (445)
T ss_pred CHHHHHHHHHhcCC
Confidence 13445556666553
No 190
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.031 Score=60.07 Aligned_cols=179 Identities=17% Similarity=0.232 Sum_probs=105.4
Q ss_pred cccCcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 149 SSKDYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
|...+.++-|-++.+++|...+. + ..++=|-++|++|.|||-||++|++.-... |+.|..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEecc
Confidence 34456677788888888887764 1 246788999999999999999999987654 343332
Q ss_pred Cc-------CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc------------c----hhhhcccCCCC--
Q 040332 216 SQ-------DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL------------D----LRVVGIPHGDD-- 270 (1210)
Q Consensus 216 ~~-------~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~------------~----~~~~~~~~~~~-- 270 (1210)
+. .-.++.+++..... ......|.+|.++... + .-++...+...
T Consensus 219 SElVqKYiGEGaRlVRelF~lAr-----------ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAR-----------EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHh-----------hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 21 11233344433221 5667888888876321 1 11222233222
Q ss_pred CCCeEEEEeeCchhhhhh---cCCC-cceeeecCCCHHHHHHHHHHHhCC--CCCCchHHHHHHHHHHHhCCcc----hH
Q 040332 271 HRGCKILLTARSLDVLSR---KMDS-QQNFAVGILKEVEAWSLFKKMAGD--YIEGSEFQLVAREVEKECAGLP----VS 340 (1210)
Q Consensus 271 ~~gs~iivTtR~~~v~~~---~~~~-~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~i~~~c~glP----la 340 (1210)
....|||..|...++... ..|. ...++++.-+.+.-.+.|+-++.. ..+.-+++ .+++.+.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHH
Confidence 246799998877665432 1121 246788766666666677766642 22333343 5566666654 34
Q ss_pred HHHHHHHHH
Q 040332 341 IVTVARALR 349 (1210)
Q Consensus 341 i~~~~~~l~ 349 (1210)
+.+=|++++
T Consensus 364 ictEAGm~A 372 (406)
T COG1222 364 ICTEAGMFA 372 (406)
T ss_pred HHHHHhHHH
Confidence 445555554
No 191
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.75 E-value=0.0037 Score=63.51 Aligned_cols=119 Identities=22% Similarity=0.335 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEec----CC--c---C----HHHHHHH
Q 040332 159 RMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVS----QS--Q---D----IRKIQGE 225 (1210)
Q Consensus 159 r~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~--~---~----~~~~~~~ 225 (1210)
+..+-...++.+. +..++.+.|++|.|||.||.+.+-+.-....|+.++++.-. +. + + ....+..
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 3344444555555 55799999999999999999999876555789988887421 11 1 1 1112223
Q ss_pred HHHHhCCCcccCCcc-----cc---------cCc---cEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCc
Q 040332 226 IADKLGLKFHEESEP-----GR---------EEK---KILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARS 282 (1210)
Q Consensus 226 i~~~l~~~~~~~~~~-----~~---------~~k---r~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~ 282 (1210)
+.+.+..-....... .. +|+ +-+||+|++.+. .++..+.... +.|||||++=-.
T Consensus 83 ~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~ 155 (205)
T PF02562_consen 83 IYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE--
T ss_pred HHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCc
Confidence 333333211111000 00 333 468999999775 5777665553 568999998643
No 192
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.71 E-value=0.028 Score=62.86 Aligned_cols=186 Identities=14% Similarity=0.161 Sum_probs=116.9
Q ss_pred cHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHH-HHHHHHhhccCCCCeEEEEEecCC---cCHHHHHHHHHHHhCCC-
Q 040332 159 RMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLA-EEVARKIKSDKIFDQVVFAEVSQS---QDIRKIQGEIADKLGLK- 233 (1210)
Q Consensus 159 r~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~~~- 233 (1210)
|.+..++|..||.+..-..|.|.|+-|.||+.|+ .++.++.+. ++.+++.+- .+-..+++.++.++|--
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999999888899999999999999999 777766432 444443221 22233333333333210
Q ss_pred ----------------------cccCCc----------------------------------c------cccCccEEEEE
Q 040332 234 ----------------------FHEESE----------------------------------P------GREEKKILVIL 251 (1210)
Q Consensus 234 ----------------------~~~~~~----------------------------------~------~~~~kr~Llvl 251 (1210)
...-++ . ....+|-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 000000 0 00345789999
Q ss_pred eCCCCc-----------cchhhhcccCCCCCCCeEEEEeeCchhhhhh---cC--CCcceeeecCCCHHHHHHHHHHHhC
Q 040332 252 DNIWEN-----------LDLRVVGIPHGDDHRGCKILLTARSLDVLSR---KM--DSQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 252 Ddv~~~-----------~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~---~~--~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
|+.... .+|..... ..+-.+||++|-+...... .+ ...+.+.|...+.+.|.++...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 997543 24443221 1244578998877544321 22 2335789999999999999988875
Q ss_pred CCCCC-------------------chHHHHHHHHHHHhCCcchHHHHHHHHHHcCCCh
Q 040332 316 DYIEG-------------------SEFQLVAREVEKECAGLPVSIVTVARALRNNKSL 354 (1210)
Q Consensus 316 ~~~~~-------------------~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~ 354 (1210)
..... .....-....++.+||--.-+..+++.++.+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 32100 1233345677888999999999999999876554
No 193
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.71 E-value=0.00021 Score=64.90 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=79.2
Q ss_pred hcCCcceEEEecCcccccCCccccCC-CCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEe
Q 040332 547 ERMIQVRVINLSYVDLLSLPSSLVLL-SNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLD 624 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~~lp~~i~~l-~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 624 (1210)
.+..+|...+|++|.+.++|+.+... +.+..|++++|.+.+ |..+..++.|+.|+++.|.+...|..|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 45667888999999999999888654 489999999999999 8889999999999999999999999998899999999
Q ss_pred cCCCCCCCccChhh
Q 040332 625 LRDCSKLEVIPPHI 638 (1210)
Q Consensus 625 l~~~~~~~~~p~~~ 638 (1210)
..++ ....+|-+.
T Consensus 130 s~~n-a~~eid~dl 142 (177)
T KOG4579|consen 130 SPEN-ARAEIDVDL 142 (177)
T ss_pred CCCC-ccccCcHHH
Confidence 8887 666677653
No 194
>PRK08181 transposase; Validated
Probab=96.69 E-value=0.0048 Score=66.21 Aligned_cols=104 Identities=22% Similarity=0.129 Sum_probs=55.5
Q ss_pred HHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccE
Q 040332 168 SALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKI 247 (1210)
Q Consensus 168 ~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~ 247 (1210)
+|+. ...-+.++|.+|+|||.||..+.+....+ ...++|+++ .+++..+......... ......-.+-=
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~~~~~-~~~l~~l~~~d 169 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARRELQL-ESAIAKLDKFD 169 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHhCCcH-HHHHHHHhcCC
Confidence 4553 33469999999999999999999876533 334566643 4455544332210000 00000012334
Q ss_pred EEEEeCCCCc--cch--hhhcccCCCCCCCeEEEEeeCc
Q 040332 248 LVILDNIWEN--LDL--RVVGIPHGDDHRGCKILLTARS 282 (1210)
Q Consensus 248 LlvlDdv~~~--~~~--~~~~~~~~~~~~gs~iivTtR~ 282 (1210)
|||+||+... ..| +.+...+.....+..+||||..
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 9999999643 222 1222222211112358888875
No 195
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.085 Score=58.74 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=93.6
Q ss_pred HHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC---------------------CCCeEEEEEec------
Q 040332 162 TLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK---------------------IFDQVVFAEVS------ 214 (1210)
Q Consensus 162 ~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~wv~vs------ 214 (1210)
..+++... .+.-.+.+-++|+.|+|||++|+.+++..-.+. |-| ..|+.-.
T Consensus 9 ~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD-~~~i~p~~~~~~~ 86 (342)
T PRK06964 9 DWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPD-YRIVRPEALAAEA 86 (342)
T ss_pred HHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecccccccc
Confidence 34445543 333456788999999999999999997653211 122 2233111
Q ss_pred -----------------------CCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCC
Q 040332 215 -----------------------QSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGD 269 (1210)
Q Consensus 215 -----------------------~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~ 269 (1210)
....+.+ .+++.+.+..... .+++=++|+|+++.. +.+..+...+-.
T Consensus 87 ~~~~~~~~~~~~~~~~~k~~~~~~~I~idq-iR~l~~~~~~~~~-------~~~~kV~iI~~ae~m~~~AaNaLLKtLEE 158 (342)
T PRK06964 87 PGAADEAKEADADEGGKKTKAPSKEIKIEQ-VRALLDFCGVGTH-------RGGARVVVLYPAEALNVAAANALLKTLEE 158 (342)
T ss_pred cccccccccchhhcccccccccccccCHHH-HHHHHHHhccCCc-------cCCceEEEEechhhcCHHHHHHHHHHhcC
Confidence 0111122 2334443332211 455567888999865 445554444433
Q ss_pred CCCCeE-EEEeeCchhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 270 DHRGCK-ILLTARSLDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 270 ~~~gs~-iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
-.+++. |++|++-..+..........+.+.+++.++..+.+... + .. + ...++..++|.|..+..+
T Consensus 159 Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~--~~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 159 PPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G--VA-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred CCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C--CC-h-----HHHHHHHcCCCHHHHHHH
Confidence 334555 44555545555443445678999999999999888765 2 11 1 123577889999755543
No 196
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.60 E-value=0.0059 Score=59.40 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
...+.|+|++|+||||+|+.++....... ..++++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEE
Confidence 35789999999999999999998876432 2455665544
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.035 Score=67.18 Aligned_cols=111 Identities=19% Similarity=0.282 Sum_probs=64.1
Q ss_pred ccccccHHHHHHHHHHhC-------CC--CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHH
Q 040332 154 EAFESRMPTLRSILSALE-------DP--DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQG 224 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 224 (1210)
..++|.++.++.+.+.+. ++ ...+.-.+|+.|||||-||++++...-... +..+-++.|+-..- .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~Ek----H 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEK----H 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHH----H
Confidence 456799999998888875 22 346778899999999999999998762110 33444444332111 1
Q ss_pred HHHHHhCCCcc----cC-Cc-ccc-cCccE-EEEEeCCCCc--cchhhhcccCCCC
Q 040332 225 EIADKLGLKFH----EE-SE-PGR-EEKKI-LVILDNIWEN--LDLRVVGIPHGDD 270 (1210)
Q Consensus 225 ~i~~~l~~~~~----~~-~~-~~~-~~kr~-LlvlDdv~~~--~~~~~~~~~~~~~ 270 (1210)
.+.+-+|.+.. ++ .. .+. +.+.| +|.||.|+.. +.++-+...+.+|
T Consensus 565 sVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 22222332211 11 00 001 55555 8889999854 5555555555443
No 198
>PRK07261 topology modulation protein; Provisional
Probab=96.55 E-value=0.0056 Score=61.40 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=34.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEEEEecCCcCHHHHHHHHHHH
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSD-KIFDQVVFAEVSQSQDIRKIQGEIADK 229 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~ 229 (1210)
.|.|+|++|+||||||+++....... -+.|...|-..-...+..+....+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~ 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNF 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHH
Confidence 58999999999999999998775432 245666674333333444444444443
No 199
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.53 E-value=0.019 Score=67.23 Aligned_cols=170 Identities=13% Similarity=0.102 Sum_probs=90.5
Q ss_pred cccccccHHHHHHHHHHh---C-------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-----c
Q 040332 153 YEAFESRMPTLRSILSAL---E-------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-----Q 217 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l---~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~ 217 (1210)
..++.|.+..++.+.... . -...+-|-++|++|+|||.+|+.+++..... | +-+..+.- .
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~l~~~~vG 301 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGKLFGGIVG 301 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHHhcccccC
Confidence 455667766665554321 1 1235678999999999999999999987532 2 11221110 0
Q ss_pred CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc----c----------hhhhcccCCCCCCCeEEEEeeCch
Q 040332 218 DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL----D----------LRVVGIPHGDDHRGCKILLTARSL 283 (1210)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~----~----------~~~~~~~~~~~~~gs~iivTtR~~ 283 (1210)
..+.-++++.+... ...+.+|++|+++..- . ...+...+.....+.-||.||.+.
T Consensus 302 ese~~l~~~f~~A~-----------~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~ 370 (489)
T CHL00195 302 ESESRMRQMIRIAE-----------ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNI 370 (489)
T ss_pred hHHHHHHHHHHHHH-----------hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCCh
Confidence 11222233332211 3467899999987421 0 011111122223345566777664
Q ss_pred hhhhhcC---C-CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 284 DVLSRKM---D-SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 284 ~v~~~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
.-....+ + -...+.++.-+.++-.++|..+.........-......+++.+.|.-
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 4322111 1 23468888889999999998887532211100112345666665544
No 200
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.033 Score=62.57 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDN 253 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDd 253 (1210)
....+.|||..|.|||-|++++.+.......=..+++++. +....+.+..+..+.. ..-...-.-=++++||
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~~~~--~~Fk~~y~~dlllIDD 183 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRDNEM--EKFKEKYSLDLLLIDD 183 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHhhhH--HHHHHhhccCeeeech
Confidence 3679999999999999999999999875421123555532 2223333333211000 0000011122789999
Q ss_pred CCCc---cchh-hh---cccCCCCCCCeEEEEeeCchh---------hhhhcCCCcceeeecCCCHHHHHHHHHHHhC
Q 040332 254 IWEN---LDLR-VV---GIPHGDDHRGCKILLTARSLD---------VLSRKMDSQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 254 v~~~---~~~~-~~---~~~~~~~~~gs~iivTtR~~~---------v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
++-. +.|+ .+ ...+.. .|-.||+|++... +.+ .....-++++.+.+.+...+.+.+.+.
T Consensus 184 iq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~S-R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 184 IQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRS-RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred HhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHH-HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 9753 2222 22 222222 2338999986522 212 244456899999999999999998774
No 201
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.024 Score=64.26 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=89.1
Q ss_pred ccccHHHHHHHHHHhC-CCCceE-EEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEEEEEec
Q 040332 156 FESRMPTLRSILSALE-DPDVNM-LGIYGMGGIGKTMLAEEVARKIKSDK-------------------IFDQVVFAEVS 214 (1210)
Q Consensus 156 ~~gr~~~~~~l~~~l~-~~~~~v-i~i~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs 214 (1210)
++|.+....++..+.. .++.+. +-++|++|+||||+|..+++...... ..+.+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4567777778888877 444555 99999999999999999999875322 13456666666
Q ss_pred CCcC---HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCc-hhhhhh
Q 040332 215 QSQD---IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTARS-LDVLSR 288 (1210)
Q Consensus 215 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTtR~-~~v~~~ 288 (1210)
.... ..+..+++.+....... .++.-++++|+++... .-..+...+-.....+.+|++|.+ ..+...
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 6555 46666777766544332 4677889999998652 333333333333456777777764 333332
Q ss_pred cCCCcceeeecCCC
Q 040332 289 KMDSQQNFAVGILK 302 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~ 302 (1210)
-......+++.+.+
T Consensus 156 I~SRc~~i~f~~~~ 169 (325)
T COG0470 156 IRSRCQRIRFKPPS 169 (325)
T ss_pred hhhcceeeecCCch
Confidence 23334566776633
No 202
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.45 E-value=0.0055 Score=63.78 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEV 213 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 213 (1210)
.-.++|+|..|.||||++..+...... .|+.+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEEec
Confidence 347889999999999999999988764 4888777754
No 203
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.44 E-value=0.0026 Score=61.65 Aligned_cols=75 Identities=23% Similarity=0.220 Sum_probs=45.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCccc-ccCccEEEEEeCCCC
Q 040332 178 LGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPG-REEKKILVILDNIWE 256 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~kr~LlvlDdv~~ 256 (1210)
|-++|.+|+|||+||+.+++... ....-+.++...+..++....--.-+...-...... ...+..++|||++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~ 76 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINR 76 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCccc
Confidence 67899999999999999999873 234446777877777765432211000000000000 135789999999984
Q ss_pred c
Q 040332 257 N 257 (1210)
Q Consensus 257 ~ 257 (1210)
.
T Consensus 77 a 77 (139)
T PF07728_consen 77 A 77 (139)
T ss_dssp -
T ss_pred C
Confidence 3
No 204
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.44 E-value=0.098 Score=54.11 Aligned_cols=230 Identities=14% Similarity=0.134 Sum_probs=128.3
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhc----cCCCCeEEEEEecCC-------------
Q 040332 154 EAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKS----DKIFDQVVFAEVSQS------------- 216 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~------------- 216 (1210)
..+.++++....+......++.+-.-++|+.|.||-|.+..+.+..-. +-.-+.+-|.+-|..
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 346677777777777666677899999999999999988888876421 111234444433222
Q ss_pred --------cCHHHHHHHHHHHhCCCcccCCcccccCccE-EEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCc-hh
Q 040332 217 --------QDIRKIQGEIADKLGLKFHEESEPGREEKKI-LVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARS-LD 284 (1210)
Q Consensus 217 --------~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~-LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~-~~ 284 (1210)
..-+-+..+++++++...+-+.. ..+.| ++|+-.+++. ++-.+++...-.-.+.+|+|+.-.+ ..
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie~~---~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIETQ---GQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSR 169 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchhhc---cccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCccc
Confidence 11234566666665433322211 23344 4455555433 2223333333333456777764332 11
Q ss_pred hhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHhCCcchHHHHHHHHHHcC----------CC
Q 040332 285 VLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYI-EGSEFQLVAREVEKECAGLPVSIVTVARALRNN----------KS 353 (1210)
Q Consensus 285 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~----------~~ 353 (1210)
+...--...-.+++...+++|-...+++.+..+. .-| ++++.+|+++++|.---...+--.++.+ -.
T Consensus 170 iIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~ 247 (351)
T KOG2035|consen 170 IIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIP 247 (351)
T ss_pred chhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCC
Confidence 1111122334689999999999999998885332 222 6789999999988654333333333321 14
Q ss_pred hHHHHHHHHHhcCCCCCCccccchhHHHHHHhhhcCC
Q 040332 354 LFDWKDALEQLRRPPLKNFMNIQPNAHKAIKLSYDNL 390 (1210)
Q Consensus 354 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L 390 (1210)
.-+|+.+..++......+- ....+.++-..=|+-|
T Consensus 248 ~~dWe~~i~e~a~~i~~eQ--s~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 248 KPDWEIYIQEIARVILKEQ--SPAKLLEVRGRLYELL 282 (351)
T ss_pred CccHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHH
Confidence 5679988877654332221 1233444444445444
No 205
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.43 E-value=0.013 Score=73.00 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=86.0
Q ss_pred cccccccHHHHHHHHHHhC------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHH
Q 040332 153 YEAFESRMPTLRSILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEI 226 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 226 (1210)
....+|.++.+++|+.++. .....++.++|++|+||||+|+.++...... |- -+..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--YV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EE---EEEcCCCCCHHHhccch
Confidence 3456799999999988775 2345689999999999999999999876422 32 13333333333222111
Q ss_pred HHHhCCCcccCCc-ccc-cCccEEEEEeCCCCccc------hhhhcccCCC---------------CCCCeEEEEeeCch
Q 040332 227 ADKLGLKFHEESE-PGR-EEKKILVILDNIWENLD------LRVVGIPHGD---------------DHRGCKILLTARSL 283 (1210)
Q Consensus 227 ~~~l~~~~~~~~~-~~~-~~kr~LlvlDdv~~~~~------~~~~~~~~~~---------------~~~gs~iivTtR~~ 283 (1210)
....+........ ... ...+-+++||.++.... ...+...+.+ .-.+.-+|.|+.+.
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~ 475 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM 475 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC
Confidence 0001000000000 000 12344788999864411 1222222211 11344455566655
Q ss_pred hhhhhcCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 284 DVLSRKMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 284 ~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
.+.....+...++.+.+++.+|-.++.+++.
T Consensus 476 ~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 476 NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4444344555678899999888777766654
No 206
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.083 Score=59.03 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhcc--------------------CCCCeEEEEEec---C
Q 040332 160 MPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSD--------------------KIFDQVVFAEVS---Q 215 (1210)
Q Consensus 160 ~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs---~ 215 (1210)
....+++.+.+..++ ...+-+.|+.|+||+|+|..++...-.. .|-| ..++.-. .
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~ 86 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLTPEKGKS 86 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecccccc
Confidence 345566777776554 5677899999999999999998876321 1223 2344221 1
Q ss_pred CcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCc-hhhhhhcCCC
Q 040332 216 SQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARS-LDVLSRKMDS 292 (1210)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~-~~v~~~~~~~ 292 (1210)
...++++ +++.+.+..... .+++=++|+|+++.. +....+...+-.-..++.+|.+|.+ ..+.......
T Consensus 87 ~I~idqi-R~l~~~~~~~~~-------~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 87 SLGVDAV-REVTEKLYEHAR-------LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred cCCHHHH-HHHHHHHhhccc-------cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 1233333 345544433222 466778899998865 3333333333222335555555544 5555443445
Q ss_pred cceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHH
Q 040332 293 QQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIV 342 (1210)
Q Consensus 293 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 342 (1210)
...+.+.+++.+++.+.+....+ .+ .+.+..++..++|.|..+.
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVT---MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccC---CC---HHHHHHHHHHcCCCHHHHH
Confidence 56789999999999888765432 11 2236678999999996443
No 207
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.02 Score=66.31 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=107.0
Q ss_pred CcccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhccC--C-----------------CCeEEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSDK--I-----------------FDQVVFA 211 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~--~-----------------F~~~~wv 211 (1210)
.+.+++|.+.....|...+..++ ..-.-..|+-|+||||+|+-++.-.-... . |--++-+
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEI 93 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhh
Confidence 46677999999999999887554 35567789999999999999997653221 0 1111111
Q ss_pred EecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCe-EEEEeeCchhhhhh
Q 040332 212 EVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGC-KILLTARSLDVLSR 288 (1210)
Q Consensus 212 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs-~iivTtR~~~v~~~ 288 (1210)
+......+.+ .++|.+...-... .++.=..|+|.|.-. ..|..+...+-.--... .|+.||-...+...
T Consensus 94 DaASn~gVdd-iR~i~e~v~y~P~-------~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 94 DAASNTGVDD-IREIIEKVNYAPS-------EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred hhhhccChHH-HHHHHHHhccCCc-------cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 1111111111 2233333221111 556667889998743 56766554442222233 46667777777766
Q ss_pred cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCc
Q 040332 289 KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGL 337 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 337 (1210)
.....+.|.++.++.++-...+...+..+.-.. ..+...-|++..+|.
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~-e~~aL~~ia~~a~Gs 213 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI-EEDALSLIARAAEGS 213 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHHcCCC
Confidence 667778999999999998888888775332221 123445566666553
No 208
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.41 E-value=0.035 Score=60.20 Aligned_cols=56 Identities=25% Similarity=0.252 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHH
Q 040332 161 PTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQ 223 (1210)
Q Consensus 161 ~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 223 (1210)
..++++..++..+ +-|-+.|.+|+|||++|+.+++... ...++++.+...+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 3455555555443 3566899999999999999997442 123455555555544443
No 209
>PRK12377 putative replication protein; Provisional
Probab=96.40 E-value=0.0083 Score=63.54 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDN 253 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDd 253 (1210)
+...+.++|.+|+|||+||.++++....+ .-.++++++. +++..+................-.+-=|||+||
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDD 171 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNGQSGEKFLQELCKVDLLVLDE 171 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcC
Confidence 34689999999999999999999988643 3445777543 344444333211100000000023455899999
Q ss_pred CCC
Q 040332 254 IWE 256 (1210)
Q Consensus 254 v~~ 256 (1210)
+..
T Consensus 172 lg~ 174 (248)
T PRK12377 172 IGI 174 (248)
T ss_pred CCC
Confidence 943
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.33 E-value=0.0051 Score=67.72 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=41.1
Q ss_pred cccccHHHHHHHHHHhCC------CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 155 AFESRMPTLRSILSALED------PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 688999999999999862 34689999999999999999999998754
No 211
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.12 Score=58.29 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=84.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe------cCCcCHHHHHHHHHHHhCCCcccCCcccccCccE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEV------SQSQDIRKIQGEIADKLGLKFHEESEPGREEKKI 247 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v------s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~ 247 (1210)
....+.+.|++|+|||+||.+++..-. |+-+=-++. |+......+-+..-+.. +..--
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAY------------kS~ls 600 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMIGLSESAKCAHIKKIFEDAY------------KSPLS 600 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHccCccHHHHHHHHHHHHHHhh------------cCcce
Confidence 456677889999999999999998754 665433322 11111111211111111 44556
Q ss_pred EEEEeCCCCccchhhhcccC---------------CCCCCCeEEEEeeCchhhhhhcCCC----cceeeecCCCH-HHHH
Q 040332 248 LVILDNIWENLDLRVVGIPH---------------GDDHRGCKILLTARSLDVLSRKMDS----QQNFAVGILKE-VEAW 307 (1210)
Q Consensus 248 LlvlDdv~~~~~~~~~~~~~---------------~~~~~gs~iivTtR~~~v~~~~~~~----~~~~~l~~L~~-~~~~ 307 (1210)
.||+||++..-+|-.|+..+ |+.++.--|+-||....|... |+- ...|.++.++. ++..
T Consensus 601 iivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl~~~~~~~ 679 (744)
T KOG0741|consen 601 IIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNLTTGEQLL 679 (744)
T ss_pred EEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCccCchHHHH
Confidence 89999998887776654332 222333335567777777643 332 23688888887 6777
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHh
Q 040332 308 SLFKKMAGDYIEGSEFQLVAREVEKEC 334 (1210)
Q Consensus 308 ~lf~~~~~~~~~~~~~~~~~~~i~~~c 334 (1210)
+.+...- ...+.+.+.++.+...+|
T Consensus 680 ~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 680 EVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHcc--CCCcchhHHHHHHHhccc
Confidence 7766543 122344555666666666
No 212
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.034 Score=66.72 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=100.3
Q ss_pred cccccccH---HHHHHHHHHhCCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHH
Q 040332 153 YEAFESRM---PTLRSILSALEDP---------DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIR 220 (1210)
Q Consensus 153 ~~~~~gr~---~~~~~l~~~l~~~---------~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (1210)
+.++.|-+ +++.++++.|.++ -++=+-++|++|.|||-||++++....+- |+++|...-++
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSEFvE 382 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSEFVE 382 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHHHHH
Confidence 34445555 4566667777643 25778999999999999999999988765 34443321111
Q ss_pred -------HHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc-----------------cchhhhcccCCCCCC--Ce
Q 040332 221 -------KIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN-----------------LDLRVVGIPHGDDHR--GC 274 (1210)
Q Consensus 221 -------~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~-----------------~~~~~~~~~~~~~~~--gs 274 (1210)
.-.+++..... .....++.+|+++.. ..+.++...+..... +.
T Consensus 383 ~~~g~~asrvr~lf~~ar-----------~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLAR-----------KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred HhcccchHHHHHHHHHhh-----------ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 01111111111 455667777766432 123334333333222 33
Q ss_pred EEEEeeCchhhhhh---cCCC-cceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHH
Q 040332 275 KILLTARSLDVLSR---KMDS-QQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSI 341 (1210)
Q Consensus 275 ~iivTtR~~~v~~~---~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 341 (1210)
-++-+|+..++.+. ..+. ...+.++.-+...-.+.|.-++.......+..++++ |+...-|.+=|.
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 34446776666533 1121 246788888888899999998875444455666776 888888877443
No 213
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.29 E-value=0.053 Score=68.35 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=93.9
Q ss_pred CcccccccHHHHHHHHHHhC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC---
Q 040332 152 DYEAFESRMPTLRSILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ--- 215 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--- 215 (1210)
....+.|.+..++++...+. -...+-|.++|++|+|||++|+++++..... | +.+..++
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f---i~v~~~~l~~ 525 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F---IAVRGPEILS 525 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEehHHHhh
Confidence 34556677777776655542 1234568899999999999999999987532 3 2222111
Q ss_pred -C-cCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--------------chhhhcccCCC--CCCCeEEE
Q 040332 216 -S-QDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--------------DLRVVGIPHGD--DHRGCKIL 277 (1210)
Q Consensus 216 -~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--------------~~~~~~~~~~~--~~~gs~ii 277 (1210)
. ...+..++++.+... .....+|++|+++... ....+...+.. ...+.-||
T Consensus 526 ~~vGese~~i~~~f~~A~-----------~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 526 KWVGESEKAIREIFRKAR-----------QAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred cccCcHHHHHHHHHHHHH-----------hcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 0 011223333333221 4456899999986320 01122222221 12345567
Q ss_pred EeeCchhhhhhcC----CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 278 LTARSLDVLSRKM----DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 278 vTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
.||.......... .-...+.++..+.++-.++|..+..+....+.. ....+++.+.|.-
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 7776655432211 123578899999999999998776432211111 1346777777654
No 214
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.29 E-value=0.028 Score=67.30 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=40.5
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+++|.+..++.+...+......-|-|+|.+|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455788999999999887766666677899999999999999998754
No 215
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.27 E-value=0.028 Score=71.09 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=37.4
Q ss_pred ccccccHHHHHHHHHHhC-------CC--CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 154 EAFESRMPTLRSILSALE-------DP--DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..++|.+..++.+.+.+. ++ ...++.++|+.|+|||.+|+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999888874 12 23478999999999999999998875
No 216
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.019 Score=67.38 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=86.1
Q ss_pred ccccHHHHHHHHHHhC------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHH-------
Q 040332 156 FESRMPTLRSILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKI------- 222 (1210)
Q Consensus 156 ~~gr~~~~~~l~~~l~------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~------- 222 (1210)
-.|-++.+++|++.|- .-+.+++++||++|||||.|++.++.-...+ |- -++++.-.|..++
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--fv---R~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--FV---RISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--EE---EEecCccccHHHhccccccc
Confidence 3489999999998885 3345899999999999999999999987644 32 1233333333332
Q ss_pred --------HHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc-ch-----hhhcccCCC-------------CCCCeE
Q 040332 223 --------QGEIADKLGLKFHEESEPGREEKKILVILDNIWENL-DL-----RVVGIPHGD-------------DHRGCK 275 (1210)
Q Consensus 223 --------~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~-~~-----~~~~~~~~~-------------~~~gs~ 275 (1210)
++.+.+. +.++-+++||.++... .+ .++...+.+ .--=|+
T Consensus 400 IGamPGrIiQ~mkka-------------~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 400 IGAMPGKIIQGMKKA-------------GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred cccCChHHHHHHHHh-------------CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 2222111 5677899999987431 11 111111110 001245
Q ss_pred EE-EeeCc-hh-hhhhcCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 276 IL-LTARS-LD-VLSRKMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 276 ii-vTtR~-~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
|+ |+|-| -+ +....++.-.++++.+-+++|=.+.=+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 54 44443 22 333346667789999999998877766654
No 217
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.20 E-value=0.034 Score=70.08 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=91.3
Q ss_pred CcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC---
Q 040332 152 DYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ--- 215 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--- 215 (1210)
...++.|.+..++++.+++. . ...+-|.++|++|+||||+|+.+++..... | +.+..+.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~~i~~ 250 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGPEIMS 250 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecHHHhc
Confidence 44557899998888877653 1 234678899999999999999999876422 2 2232211
Q ss_pred -Cc-CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc-------------chhhhcccCCCC-CCCeEEEE-
Q 040332 216 -SQ-DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL-------------DLRVVGIPHGDD-HRGCKILL- 278 (1210)
Q Consensus 216 -~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~-------------~~~~~~~~~~~~-~~gs~iiv- 278 (1210)
.. ....-++.+.+... .....+|++|+++... ....+...+... ..+..++|
T Consensus 251 ~~~g~~~~~l~~lf~~a~-----------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 251 KYYGESEERLREIFKEAE-----------ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred ccccHHHHHHHHHHHHHH-----------hcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 00 11222233333221 3345689999985421 111222222111 12333444
Q ss_pred eeCchhhhhhcC---C-CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchH
Q 040332 279 TARSLDVLSRKM---D-SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVS 340 (1210)
Q Consensus 279 TtR~~~v~~~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 340 (1210)
||....-..... + -...+.++..+.++-.+++........... ......+++.+.|.--|
T Consensus 320 atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 320 ATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred ecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCHH
Confidence 554332111111 1 124677888888888888886654222111 11245677888776543
No 218
>PRK09183 transposase/IS protein; Provisional
Probab=96.18 E-value=0.0053 Score=66.05 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+.|+|++|+|||+||..+.+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999987754
No 219
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.16 E-value=0.062 Score=58.90 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=81.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-----cCHHHHHHHHHHHhCCCcccCCcccccCccE
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-----QDIRKIQGEIADKLGLKFHEESEPGREEKKI 247 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~ 247 (1210)
..++.++|||++|.|||.+|+++++..... | +-++.++- ...++.++++.+..... ...+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~--~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~------a~~~~aPc 214 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE--P---IVMSAGELESENAGEPGKLIRQRYREAADI------IKKKGKMS 214 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC--e---EEEEHHHhhcCcCCcHHHHHHHHHHHHHHH------hhccCCCe
Confidence 446899999999999999999999998753 2 22332211 13344444444322100 00146789
Q ss_pred EEEEeCCCCcc------c--h------hhhccc--------C------CCCCCCeEEEEeeCchhhhhhcC---CCccee
Q 040332 248 LVILDNIWENL------D--L------RVVGIP--------H------GDDHRGCKILLTARSLDVLSRKM---DSQQNF 296 (1210)
Q Consensus 248 LlvlDdv~~~~------~--~------~~~~~~--------~------~~~~~gs~iivTtR~~~v~~~~~---~~~~~~ 296 (1210)
.|++|+++... + . ..+... + ....++..||+||.......... +.-..
T Consensus 215 VLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk- 293 (413)
T PLN00020 215 CLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK- 293 (413)
T ss_pred EEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc-
Confidence 99999986321 0 0 111110 1 12245677899997755432111 11111
Q ss_pred eecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch
Q 040332 297 AVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV 339 (1210)
Q Consensus 297 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 339 (1210)
.+..-+.++-.++++.+......+ ..-..+|++...|-|+
T Consensus 294 ~i~lPd~e~R~eIL~~~~r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 294 FYWAPTREDRIGVVHGIFRDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred eeCCCCHHHHHHHHHHHhccCCCC---HHHHHHHHHcCCCCCc
Confidence 233455666666676665432221 2334567777777664
No 220
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.15 E-value=0.017 Score=61.44 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=39.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCC-CeEEEEEecCCcC-HHHHHHHHHH
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIF-DQVVFAEVSQSQD-IRKIQGEIAD 228 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~i~~ 228 (1210)
.+...++|.|..|+||||||+++++....+ | +.++++-+.+... +.++.+++.+
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 345789999999999999999999998754 5 4466677776543 3445555443
No 221
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.15 E-value=0.033 Score=56.28 Aligned_cols=118 Identities=10% Similarity=0.136 Sum_probs=73.4
Q ss_pred cCcccccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEI 226 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 226 (1210)
.+...++|-+...+.+++--. ....--|-+||.-|+||+.|++++.+....+ .-.-+=|+-.+-.++..+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glrLVEV~k~dl~~Lp~l---- 130 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLRLVEVDKEDLATLPDL---- 130 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCeEEEEcHHHHhhHHHH----
Confidence 345667788888877765432 3345678899999999999999999998754 333333322222333333
Q ss_pred HHHhCCCcccCCcccccCccEEEEEeCCCC---ccchhhhcccCCCC---CCCeEEEEeeCchh
Q 040332 227 ADKLGLKFHEESEPGREEKKILVILDNIWE---NLDLRVVGIPHGDD---HRGCKILLTARSLD 284 (1210)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~---~~~~~~~~~~~~~~---~~gs~iivTtR~~~ 284 (1210)
++++.. ...||+|..||..- .+.+..++..+..+ .+...++..|.++.
T Consensus 131 ~~~Lr~----------~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 131 VELLRA----------RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred HHHHhc----------CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 333321 57899999999853 34566666555432 23344555555543
No 222
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.15 E-value=0.0047 Score=58.18 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999864
No 223
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.13 E-value=0.014 Score=62.75 Aligned_cols=44 Identities=30% Similarity=0.404 Sum_probs=36.6
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHH
Q 040332 154 EAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
-++.+|..+-.--+++|.++++..|.+.|.+|.|||-||.+..=
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHH
Confidence 34556777777778889999999999999999999998876653
No 224
>PRK06526 transposase; Provisional
Probab=96.13 E-value=0.0041 Score=66.41 Aligned_cols=74 Identities=20% Similarity=0.127 Sum_probs=42.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNI 254 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv 254 (1210)
..-+.++|++|+|||+||..+.+....+ .+. +.|+ +..+++..+......... ......-.+.-+||+||+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~-v~f~------t~~~l~~~l~~~~~~~~~-~~~l~~l~~~dlLIIDD~ 168 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GHR-VLFA------TAAQWVARLAAAHHAGRL-QAELVKLGRYPLLIVDEV 168 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CCc-hhhh------hHHHHHHHHHHHHhcCcH-HHHHHHhccCCEEEEccc
Confidence 4568999999999999999999876533 122 3443 333444444332211000 000000233458999999
Q ss_pred CCc
Q 040332 255 WEN 257 (1210)
Q Consensus 255 ~~~ 257 (1210)
...
T Consensus 169 g~~ 171 (254)
T PRK06526 169 GYI 171 (254)
T ss_pred ccC
Confidence 743
No 225
>PRK04132 replication factor C small subunit; Provisional
Probab=96.11 E-value=0.11 Score=64.55 Aligned_cols=153 Identities=10% Similarity=0.006 Sum_probs=92.8
Q ss_pred CCCCcHHHHHHHHHHHhhccCCC-CeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--c
Q 040332 183 MGGIGKTMLAEEVARKIKSDKIF-DQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--D 259 (1210)
Q Consensus 183 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~ 259 (1210)
+.++||||+|..++++.-.. .+ ..++-+++|.......+ +++++.+...... ...+.-++|+|+++... +
T Consensus 574 Ph~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~-----~~~~~KVvIIDEaD~Lt~~A 646 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVI-REKVKEFARTKPI-----GGASFKIIFLDEADALTQDA 646 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc-----CCCCCEEEEEECcccCCHHH
Confidence 67899999999999986322 12 23667777775555544 3333332111110 02345799999998763 4
Q ss_pred hhhhcccCCCCCCCeEEEEeeCc-hhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 260 LRVVGIPHGDDHRGCKILLTARS-LDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 260 ~~~~~~~~~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
...+...+-.....+++|.+|.+ ..+..........+.+.+++.++-.+.+.+.+....-. --.+....|++.++|.+
T Consensus 647 QnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e~L~~Ia~~s~GDl 725 (846)
T PRK04132 647 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDM 725 (846)
T ss_pred HHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCH
Confidence 55554444332345565555544 44433334456789999999999888887766422111 11446789999999987
Q ss_pred hHHHH
Q 040332 339 VSIVT 343 (1210)
Q Consensus 339 lai~~ 343 (1210)
-.+..
T Consensus 726 R~AIn 730 (846)
T PRK04132 726 RRAIN 730 (846)
T ss_pred HHHHH
Confidence 44433
No 226
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.017 Score=64.80 Aligned_cols=49 Identities=29% Similarity=0.380 Sum_probs=38.8
Q ss_pred ccccccHHHHHHHHHHhCCCC---------ceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 154 EAFESRMPTLRSILSALEDPD---------VNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~---------~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
.++..-..++++|++.|.++. ++-|-++|++|.|||-||++|+.+..+-
T Consensus 307 kG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 307 KGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred cChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 333344567889999998642 5778999999999999999999987765
No 227
>PHA02244 ATPase-like protein
Probab=95.97 E-value=0.053 Score=59.93 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=25.8
Q ss_pred HHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 164 RSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 164 ~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+..++.. + .-|-|+|++|+|||++|+++++...
T Consensus 110 ~ri~r~l~~-~-~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 110 ADIAKIVNA-N-IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHhc-C-CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444433 2 3467899999999999999998864
No 228
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.01 Score=63.42 Aligned_cols=82 Identities=22% Similarity=0.221 Sum_probs=49.3
Q ss_pred HHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCc
Q 040332 166 ILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEK 245 (1210)
Q Consensus 166 l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~k 245 (1210)
+.+++. +..-+.++|.+|+|||.||.++.++.- +. =-.+.+++ ..+++.++............-...-.+
T Consensus 98 ~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~~------~~el~~~Lk~~~~~~~~~~~l~~~l~~ 167 (254)
T COG1484 98 LVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFIT------APDLLSKLKAAFDEGRLEEKLLRELKK 167 (254)
T ss_pred HHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEE------HHHHHHHHHHHHhcCchHHHHHHHhhc
Confidence 334443 667899999999999999999999987 32 23355653 445555555544321100000000122
Q ss_pred cEEEEEeCCCCc
Q 040332 246 KILVILDNIWEN 257 (1210)
Q Consensus 246 r~LlvlDdv~~~ 257 (1210)
-=||||||+-..
T Consensus 168 ~dlLIiDDlG~~ 179 (254)
T COG1484 168 VDLLIIDDIGYE 179 (254)
T ss_pred CCEEEEecccCc
Confidence 338999998653
No 229
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.96 E-value=0.1 Score=66.30 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=36.9
Q ss_pred cccccccHHHHHHHHHHhC-------CCC--ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 153 YEAFESRMPTLRSILSALE-------DPD--VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~-------~~~--~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...++|.+..++.+...+. +++ ..++.++|+.|+|||++|+.+++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999888877765 112 2478899999999999999999765
No 230
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.089 Score=61.30 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=84.9
Q ss_pred CcccccccHHHHHHHHHHhC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeE-------EEE
Q 040332 152 DYEAFESRMPTLRSILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQV-------VFA 211 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~-------~wv 211 (1210)
...++-|.++.+.++-+.+. -...+-|-.+|++|.|||++|+++++..+.. |=.+ .||
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--FlsvkgpEL~sk~v 509 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--FLSVKGPELFSKYV 509 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--eeeccCHHHHHHhc
Confidence 34555566666666654443 1356889999999999999999999988754 4332 233
Q ss_pred EecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc-------------chhhhcccCCCCCCCeEEEE
Q 040332 212 EVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL-------------DLRVVGIPHGDDHRGCKILL 278 (1210)
Q Consensus 212 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~-------------~~~~~~~~~~~~~~gs~iiv 278 (1210)
- .-++.++++.++-. +-...+|.||.++... .+.++...+........|+|
T Consensus 510 G-----eSEr~ir~iF~kAR-----------~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 510 G-----ESERAIREVFRKAR-----------QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred C-----chHHHHHHHHHHHh-----------hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 1 22445555555432 2334778888775431 12223333332222223333
Q ss_pred --ee-CchhhhhhcCC---CcceeeecCCCHHHHHHHHHHHhC
Q 040332 279 --TA-RSLDVLSRKMD---SQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 279 --Tt-R~~~v~~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
.| |...+-...+. -...+-++.-+.+.-.++|+.++.
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 33 33333222233 234677888888888899998885
No 231
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.84 E-value=0.0063 Score=62.14 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=77.1
Q ss_pred cCCcceEEEecCcccc-----cCCccccCCCCCcEEEecCccCCC------------CCCCCCCCCCcEEEeecCCCc-c
Q 040332 548 RMIQVRVINLSYVDLL-----SLPSSLVLLSNLRTLSLYYCKLLD------------ISGIGDLKKLEFLCLRGCDIR-Q 609 (1210)
Q Consensus 548 ~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~------------~~~i~~L~~L~~L~l~~~~l~-~ 609 (1210)
.+..+..+|||+|.|. .+-..|.+-.+|+..+++.-.... .+.+-++++|+..+||.|.+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4667788888888775 244556666777777777643211 234566777888888877554 3
Q ss_pred cC----cccCCCCCCCEEecCCCCCCCccChhhhc-------------CCCcccEEEccCCCCccccccccccCcccccc
Q 040332 610 LP----IEVGELICLKLLDLRDCSKLEVIPPHILS-------------NLSHLEELNIGDNSFYHWEVEVDGVKNASLNE 672 (1210)
Q Consensus 610 lp----~~i~~l~~L~~L~l~~~~~~~~~p~~~l~-------------~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 672 (1210)
.| .-|.+-+.|.||.+++| .++.+..+-++ +-+.|++.....|++...... .....+..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~---~~a~~l~s 183 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE---LSAALLES 183 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH---HHHHHHHh
Confidence 33 34566677888888777 55544432222 335666666666655321111 11122333
Q ss_pred CCCCCEEEeeccCCC
Q 040332 673 LKHLTSLQLRIKDIN 687 (1210)
Q Consensus 673 L~~L~~L~l~~~~~~ 687 (1210)
-.+|..+.+..|.+.
T Consensus 184 h~~lk~vki~qNgIr 198 (388)
T COG5238 184 HENLKEVKIQQNGIR 198 (388)
T ss_pred hcCceeEEeeecCcC
Confidence 345566666655544
No 232
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.82 E-value=0.041 Score=52.74 Aligned_cols=110 Identities=12% Similarity=0.163 Sum_probs=75.0
Q ss_pred hhHHHH-HHHHHHhhhcchhhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Q 040332 2 AEIILT-TVVQVLKCLAPPAYRQISYLRESKYTSNLQNLKTEVESLKSERVSTQHLVDEAKRKGEEIEENVENWLASANN 80 (1210)
Q Consensus 2 a~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~Wl~~~~~ 80 (1210)
||+++| |+|.+++.+...+.+...-. ...+.-+++|.+.++.|..++++.+......+..-+.=++++.+
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~---------~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~ 73 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKS---------LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHH
Confidence 567776 77777777776666665444 33455566677777777777777665443444444666788899
Q ss_pred HHHHHhhccchHHhhcccccccccCChhhhhhhhHHHHHHHHHHHHH
Q 040332 81 VIVEADKFTDDEATANKRCFKGFCPNLNTRRGLNKEVERQKKAIVKV 127 (1210)
Q Consensus 81 ~~~~~ed~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 127 (1210)
...+++++++.+..-. .+++...++.+++|+++.+.+...
T Consensus 74 ~L~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 74 LLEKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 9999999987764321 245666778889999888888776
No 233
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.80 E-value=0.0086 Score=58.77 Aligned_cols=83 Identities=22% Similarity=0.329 Sum_probs=63.6
Q ss_pred hhcCCcceEEEecCcccccCCcccc-CCCCCcEEEecCccCCC---CCCCCCCCCCcEEEeecCCCcccCc----ccCCC
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLV-LLSNLRTLSLYYCKLLD---ISGIGDLKKLEFLCLRGCDIRQLPI----EVGEL 617 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l 617 (1210)
|..+..|..|.|.+|.|+.+-..+. .+++|..|.|.+|.+.. ...+..++.|++|.+-+|.+...+. .+.++
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 5677788888888888887755554 45568888888888766 5556778888999988887775442 56788
Q ss_pred CCCCEEecCCC
Q 040332 618 ICLKLLDLRDC 628 (1210)
Q Consensus 618 ~~L~~L~l~~~ 628 (1210)
++|+.||..+.
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 99999998765
No 234
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=1.3 Score=49.86 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIW 255 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~ 255 (1210)
|---++|++|.|||++..++++... ||.. =+..+...+-.+ ++.++... ..|-+||+.|++
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIy-dLeLt~v~~n~d-Lr~LL~~t-------------~~kSIivIEDID 296 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIY-DLELTEVKLDSD-LRHLLLAT-------------PNKSILLIEDID 296 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceE-EeeeccccCcHH-HHHHHHhC-------------CCCcEEEEeecc
Confidence 5678899999999999999999875 5542 233333333333 45554442 334455555554
Q ss_pred Cccc-----------hh---------hhcccC---CCCCCCeEEEE-eeCchhhhhh---cCCCc-ceeeecCCCHHHHH
Q 040332 256 ENLD-----------LR---------VVGIPH---GDDHRGCKILL-TARSLDVLSR---KMDSQ-QNFAVGILKEVEAW 307 (1210)
Q Consensus 256 ~~~~-----------~~---------~~~~~~---~~~~~gs~iiv-TtR~~~v~~~---~~~~~-~~~~l~~L~~~~~~ 307 (1210)
-.-+ .+ -+...+ ...+.+-|||| ||...+-... ..|.. ..+.+..-+.+...
T Consensus 297 cs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK 376 (457)
T KOG0743|consen 297 CSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFK 376 (457)
T ss_pred cccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHH
Confidence 2210 00 011111 11122346555 6665443321 11221 25788999999999
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCC
Q 040332 308 SLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALRNNK 352 (1210)
Q Consensus 308 ~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~ 352 (1210)
.||..+.+...+++ ++.+|.+...|.-+.-..+|..|-.++
T Consensus 377 ~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 377 TLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred HHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 99999987544333 455666666666666566666554343
No 235
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.76 E-value=0.013 Score=58.98 Aligned_cols=72 Identities=26% Similarity=0.329 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCccc---ccCccEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPG---REEKKILVI 250 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~kr~Llv 250 (1210)
+..-+.++|..|+|||.||..+.+..-.+ .+ .+.|++ ..+++..+... ........ .-.+-=|||
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~-~v~f~~------~~~L~~~l~~~----~~~~~~~~~~~~l~~~dlLi 113 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-GY-SVLFIT------ASDLLDELKQS----RSDGSYEELLKRLKRVDLLI 113 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEE------HHHHHHHHHCC----HCCTTHCHHHHHHHTSSCEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-Cc-ceeEee------cCceecccccc----ccccchhhhcCccccccEec
Confidence 34679999999999999999999876542 23 355664 34444444321 11111100 012234788
Q ss_pred EeCCCCc
Q 040332 251 LDNIWEN 257 (1210)
Q Consensus 251 lDdv~~~ 257 (1210)
|||+-..
T Consensus 114 lDDlG~~ 120 (178)
T PF01695_consen 114 LDDLGYE 120 (178)
T ss_dssp EETCTSS
T ss_pred cccccee
Confidence 9998654
No 236
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.73 E-value=0.41 Score=49.48 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=99.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEec-CCcCHHHHHHHHHHHhCCCcccCCccc-----c---
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVS-QSQDIRKIQGEIADKLGLKFHEESEPG-----R--- 242 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~-----~--- 242 (1210)
..+.+++.++|.-|.|||++++....-... |.++-|.+. +..+...+...|+..+........... +
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 455679999999999999999955443321 222223333 345667888888888766222111100 0
Q ss_pred ----cCcc-EEEEEeCCCCc--cchhhhccc--CC-CCCCCeEEEEee--------CchhhhhhcCCCcce-eeecCCCH
Q 040332 243 ----EEKK-ILVILDNIWEN--LDLRVVGIP--HG-DDHRGCKILLTA--------RSLDVLSRKMDSQQN-FAVGILKE 303 (1210)
Q Consensus 243 ----~~kr-~LlvlDdv~~~--~~~~~~~~~--~~-~~~~gs~iivTt--------R~~~v~~~~~~~~~~-~~l~~L~~ 303 (1210)
+++| ..+++||..+. +..+.++.. +- ++..--+|+..- |-... ......... |++.|++.
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l-~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVL-RELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHH-HhhhheEEEEEecCCcCh
Confidence 7888 99999998754 333333211 11 111111233221 11111 111122234 99999999
Q ss_pred HHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHhCCcchHHHHHHHH
Q 040332 304 VEAWSLFKKMAGDYIEGS--EFQLVAREVEKECAGLPVSIVTVARA 347 (1210)
Q Consensus 304 ~~~~~lf~~~~~~~~~~~--~~~~~~~~i~~~c~glPlai~~~~~~ 347 (1210)
++...++..+......++ --.+....|..+..|.|.+|..++..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 998888887765322221 22356678999999999999877643
No 237
>PRK06696 uridine kinase; Validated
Probab=95.68 E-value=0.015 Score=61.46 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHhC---CCCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 158 SRMPTLRSILSALE---DPDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 158 gr~~~~~~l~~~l~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||+|+++......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46777778877775 456789999999999999999999988753
No 238
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.15 Score=59.79 Aligned_cols=49 Identities=24% Similarity=0.330 Sum_probs=40.9
Q ss_pred ccccccHHHHHHHHHHhC------CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 154 EAFESRMPTLRSILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
.+-.|.++.+++|+..+- +.+.+++..+|++|||||.+|+.++.-...+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk 465 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK 465 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc
Confidence 344599999999998874 4467899999999999999999999887643
No 239
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.64 E-value=0.021 Score=62.82 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=65.6
Q ss_pred ccHHHHHHHHHHhCC----CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 158 SRMPTLRSILSALED----PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 158 gr~~~~~~l~~~l~~----~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
+|........+++.. ...+-+.++|..|+|||.||.++++....+ .+. +.|+++ .+++.++....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 455555555555541 245679999999999999999999998633 233 456644 34445554443211
Q ss_pred cccCCcccccCccEEEEEeCCCCc--cchh--hhcccC-CCC-CCCeEEEEeeCc
Q 040332 234 FHEESEPGREEKKILVILDNIWEN--LDLR--VVGIPH-GDD-HRGCKILLTARS 282 (1210)
Q Consensus 234 ~~~~~~~~~~~kr~LlvlDdv~~~--~~~~--~~~~~~-~~~-~~gs~iivTtR~ 282 (1210)
.. ......-.+-=||||||+... ..|. .+...+ ... ..+-.+|+||..
T Consensus 207 ~~-~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 SV-KEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cH-HHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 00 000001234458999999643 4564 233322 112 234558888864
No 240
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.63 E-value=0.017 Score=64.12 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEV 213 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 213 (1210)
...+.++|..|+|||.||.++++....+ --.++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEH
Confidence 3789999999999999999999987643 235667754
No 241
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.57 E-value=0.027 Score=70.73 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=41.0
Q ss_pred ccccccHHHHHHHHHHhCC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 154 EAFESRMPTLRSILSALED-------P--DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||+||+.++.... ...+.++.++
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se 519 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSE 519 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCch
Confidence 4567888888888777651 1 234688999999999999999998763 2345555444
No 242
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.56 E-value=0.025 Score=72.17 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=38.1
Q ss_pred ccccccHHHHHHHHHHhCC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 154 EAFESRMPTLRSILSALED-------P--DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4578999999999888752 1 135788999999999999999998753
No 243
>PRK06921 hypothetical protein; Provisional
Probab=95.54 E-value=0.011 Score=63.82 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEV 213 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 213 (1210)
....+.++|..|+|||.||.++++....+. -..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 457899999999999999999999875431 234567764
No 244
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.17 Score=58.79 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEV 213 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 213 (1210)
..+|+|+|.+|+||||++.+++.....+.....+..++.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt 388 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT 388 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 579999999999999999999887653322234555554
No 245
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.46 E-value=0.017 Score=66.86 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=41.9
Q ss_pred cccccccHHHHHHHHHHhC------CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 153 YEAFESRMPTLRSILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+.+++|.++.+++|++.|. +...+++.++|++|+||||||+.+.+-.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 4467899999999999883 55678999999999999999999998765
No 246
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.45 E-value=0.0063 Score=62.53 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=25.4
Q ss_pred CCcceEEEecCcccccCCccccCCCCCcEEEecCc--cCCC--CCCCCCCCCCcEEEeecCCCc
Q 040332 549 MIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYC--KLLD--ISGIGDLKKLEFLCLRGCDIR 608 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~--~~~~--~~~i~~L~~L~~L~l~~~~l~ 608 (1210)
+..|..|++.+..++++.. +..|++|++|.++.| .+.. +....++++|++|++++|+++
T Consensus 42 ~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3344444444444433221 234455555555555 2222 222233355555555555443
No 247
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.02 Score=54.15 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQ 207 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~ 207 (1210)
--|.|.|++|+||||+++.+.+..+... |..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv 36 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YKV 36 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-cee
Confidence 4689999999999999999999887653 544
No 248
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.44 E-value=0.045 Score=57.85 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=51.0
Q ss_pred HHHHHHHHhCC--CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCc
Q 040332 162 TLRSILSALED--PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESE 239 (1210)
Q Consensus 162 ~~~~l~~~l~~--~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 239 (1210)
.+..+.++..+ .+...+.++|.+|+|||+||.++++....+ -..++++++ .+++..+.............
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~~~~~~~~~ 155 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFSNSETSEEQ 155 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHhhccccHHH
Confidence 34444444432 234578999999999999999999987643 345566643 44444443333110000000
Q ss_pred c-cccCccEEEEEeCCCCc--cchh
Q 040332 240 P-GREEKKILVILDNIWEN--LDLR 261 (1210)
Q Consensus 240 ~-~~~~kr~LlvlDdv~~~--~~~~ 261 (1210)
. ..-.+.=+||+||+... .+|+
T Consensus 156 ~l~~l~~~dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 156 LLNDLSNVDLLVIDEIGVQTESRYE 180 (244)
T ss_pred HHHHhccCCEEEEeCCCCCCCCHHH
Confidence 0 00123348889999654 4454
No 249
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.41 E-value=0.044 Score=56.09 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=43.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC-CcCHHHHHHHHHHHhCCCc
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ-SQDIRKIQGEIADKLGLKF 234 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 234 (1210)
++||.++|+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 4799999999999999998888887754 34567777643 3345667788899988764
No 250
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.11 Score=60.90 Aligned_cols=159 Identities=15% Similarity=0.091 Sum_probs=85.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC--cCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEe
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS--QDIRKIQGEIADKLGLKFHEESEPGREEKKILVILD 252 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlD 252 (1210)
..-|-|.|..|+|||+||+++++... +.+.-.+.+|+++.- ...+.+++.+...+..-. ....-+||||
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~--------~~~PSiIvLD 501 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEAL--------WYAPSIIVLD 501 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHHH--------hhCCcEEEEc
Confidence 45788999999999999999999887 445555677776543 335555554433321100 3446789999
Q ss_pred CCCCc--------cchhh-----------hcccCCCCCCCeEEEEeeCchhhhhhcCC----CcceeeecCCCHHHHHHH
Q 040332 253 NIWEN--------LDLRV-----------VGIPHGDDHRGCKILLTARSLDVLSRKMD----SQQNFAVGILKEVEAWSL 309 (1210)
Q Consensus 253 dv~~~--------~~~~~-----------~~~~~~~~~~gs~iivTtR~~~v~~~~~~----~~~~~~l~~L~~~~~~~l 309 (1210)
|++-. .+|.. +...+...++.-++|.|.....-...... -.....+..+...+-.++
T Consensus 502 dld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~I 581 (952)
T KOG0735|consen 502 DLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEI 581 (952)
T ss_pred chhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHH
Confidence 98632 22321 11111222222244455544322111111 123567888888877777
Q ss_pred HHHHhCCCCCCchHHHHHHHHHHHhCC-cchHHHH
Q 040332 310 FKKMAGDYIEGSEFQLVAREVEKECAG-LPVSIVT 343 (1210)
Q Consensus 310 f~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~ 343 (1210)
++.........-. .+...-+..+|+| .|.-+++
T Consensus 582 L~~~~s~~~~~~~-~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 582 LTTIFSKNLSDIT-MDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred HHHHHHhhhhhhh-hHHHHHHHHhcCCccchhHHH
Confidence 7665532221111 2222337777766 3444443
No 251
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.12 Score=57.66 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-cCHHHHHHHHHHHhCCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-QDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 233 (1210)
+.++|+++|.+|+||||++..++.....+ . ..+..++.... ....+-++..++.++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-G-kkVglI~aDt~RiaAvEQLk~yae~lgip 298 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-K-KTVGFITTDHSRIGTVQQLQDYVKTIGFE 298 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-C-CcEEEEecCCcchHHHHHHHHHhhhcCCc
Confidence 45799999999999999999999876533 1 23445544321 11223334444445444
No 252
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.031 Score=52.95 Aligned_cols=46 Identities=28% Similarity=0.436 Sum_probs=36.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcc
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFH 235 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 235 (1210)
+|+|-|.+|.||||+|+.++++..-. . | +...+++++++..+.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~---v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----L---V------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----e---e------eccHHHHHHHHHcCCCHH
Confidence 68999999999999999999988633 1 1 334678899998887654
No 253
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.25 E-value=0.048 Score=69.37 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=36.8
Q ss_pred ccccccHHHHHHHHHHhC-------CCC--ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 154 EAFESRMPTLRSILSALE-------DPD--VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~-------~~~--~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..++|.+..++.+...+. +++ ..++.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 567899999999887774 122 3456789999999999999999875
No 254
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.23 E-value=0.084 Score=52.53 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 156 FESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 156 ~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
++|.+..+.++++.+. .....-|-|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 3577777777776665 2333566699999999999999999843
No 255
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.21 E-value=0.12 Score=61.14 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=42.1
Q ss_pred ccccccHHHHHHHHHHhCC-----CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE
Q 040332 154 EAFESRMPTLRSILSALED-----PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAE 212 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~-----~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 212 (1210)
.++.-....++++..||.+ ...+++.+.|++|+||||.++.++++.. |+.+=|..
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 3444456677888888862 2357999999999999999999999875 67777763
No 256
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.074 Score=59.69 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC-CcCHHHHHHHHHHHhCCCcccCCcccc-------cCcc
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ-SQDIRKIQGEIADKLGLKFHEESEPGR-------EEKK 246 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~-------~~kr 246 (1210)
..++.++|+.|+||||++.++......+.....+..++... .....+-++..++.++........... -.++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 47999999999999999999998764331123455665432 233455666667777765432222111 2334
Q ss_pred EEEEEeCCCC
Q 040332 247 ILVILDNIWE 256 (1210)
Q Consensus 247 ~LlvlDdv~~ 256 (1210)
=++++|..-.
T Consensus 217 DlVLIDTaG~ 226 (374)
T PRK14722 217 HMVLIDTIGM 226 (374)
T ss_pred CEEEEcCCCC
Confidence 5566888753
No 257
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.13 E-value=0.062 Score=55.28 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=52.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCc-----------ccCCc-
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKF-----------HEESE- 239 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----------~~~~~- 239 (1210)
.++-+++.|.|.+|.||||+++.+........ ..+.+......-.. .+.+..+... .....
T Consensus 15 ~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~----~L~~~~~~~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 15 TSGDRVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAK----ELREKTGIEAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp HCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHH----HHHHHHTS-EEEHHHHTTEECCEECCS
T ss_pred hcCCeEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHH----HHHHhhCcchhhHHHHHhcCCcccccc
Confidence 34557899999999999999999988776542 23333322221222 2333332211 10000
Q ss_pred ccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeC
Q 040332 240 PGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTAR 281 (1210)
Q Consensus 240 ~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR 281 (1210)
.....++-+||+|++.-. ..+..+...... .|.|+|+.==
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 000233459999998755 355555444333 4678777643
No 258
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.13 E-value=0.12 Score=52.92 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=85.7
Q ss_pred CcccccccHHHHHH---HHHHhCCC------CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHH
Q 040332 152 DYEAFESRMPTLRS---ILSALEDP------DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKI 222 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~---l~~~l~~~------~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 222 (1210)
...+++|.++.+.+ |+..|.++ ..+-|-.+|++|.|||.+|+++++..++- | +.|....-+.+-
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vkat~liGeh 191 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKATELIGEH 191 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEechHHHHHHH
Confidence 34667888877653 55666544 36889999999999999999999988754 2 222211111111
Q ss_pred HHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--------------cchhhhcccCC--CCCCCeEEEEeeCchhhh
Q 040332 223 QGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--------------LDLRVVGIPHG--DDHRGCKILLTARSLDVL 286 (1210)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--------------~~~~~~~~~~~--~~~~gs~iivTtR~~~v~ 286 (1210)
..+-++++.. .-+..++.-.+.+.+|.++-. +...++...+. ..+.|..-|-.|.+.+..
T Consensus 192 VGdgar~Ihe----ly~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 192 VGDGARRIHE----LYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred hhhHHHHHHH----HHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 1111111100 000011455788888887532 11122222222 123466666667666654
Q ss_pred hhcCC--CcceeeecCCCHHHHHHHHHHHhC
Q 040332 287 SRKMD--SQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 287 ~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
..... -...++..--+++|-.+++..++.
T Consensus 268 D~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 268 DPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred CHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 32111 123567777788888888888874
No 259
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.11 E-value=0.2 Score=61.78 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC------CcCHHHHHHHHHHHhCCCcccCCcccccCccEEE
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ------SQDIRKIQGEIADKLGLKFHEESEPGREEKKILV 249 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~Ll 249 (1210)
+-|.++|++|.||||+|+.+++..... | +.++.+. ..... -++++..... .....+|
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~~~~~~~g~~~~-~~~~~f~~a~-----------~~~P~Ii 248 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSDFVEMFVGVGAS-RVRDMFEQAK-----------KAAPCII 248 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHHhHHhhhcccHH-HHHHHHHHHH-----------hcCCcEE
Confidence 458999999999999999999876532 3 2222211 00111 1122222211 3456789
Q ss_pred EEeCCCCcc------------ch----hhhcccCCC--CCCCeEEEEeeCchhhhhhcC---C-CcceeeecCCCHHHHH
Q 040332 250 ILDNIWENL------------DL----RVVGIPHGD--DHRGCKILLTARSLDVLSRKM---D-SQQNFAVGILKEVEAW 307 (1210)
Q Consensus 250 vlDdv~~~~------------~~----~~~~~~~~~--~~~gs~iivTtR~~~v~~~~~---~-~~~~~~l~~L~~~~~~ 307 (1210)
++|+++... .+ ..+...+.. ...+.-||.||...+...... + -...+.++..+.++-.
T Consensus 249 fIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~ 328 (644)
T PRK10733 249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 328 (644)
T ss_pred EehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHH
Confidence 999986531 11 112111211 123455666777765432211 1 1346788888888888
Q ss_pred HHHHHHhCC
Q 040332 308 SLFKKMAGD 316 (1210)
Q Consensus 308 ~lf~~~~~~ 316 (1210)
+++..+...
T Consensus 329 ~Il~~~~~~ 337 (644)
T PRK10733 329 QILKVHMRR 337 (644)
T ss_pred HHHHHHhhc
Confidence 888887753
No 260
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.08 E-value=0.038 Score=57.13 Aligned_cols=57 Identities=28% Similarity=0.459 Sum_probs=40.2
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc-CHHHHHHHH
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ-DIRKIQGEI 226 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i 226 (1210)
.++.+. =.....++|.|.+|+|||+|++++.+... -+.++++-+.+.. .+.++.+++
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~ 63 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEEL 63 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHH
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHH
Confidence 344444 13346889999999999999999999875 3556888887653 344555555
No 261
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.03 E-value=0.054 Score=63.56 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDN 253 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDd 253 (1210)
..++.-++|++|+||||||.-+++... | .++=|.+|...+...+-..|...+....- ....++..-+|+|.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~----l~adsrP~CLViDE 395 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSV----LDADSRPVCLVIDE 395 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccc----cccCCCcceEEEec
Confidence 468999999999999999999998764 3 35678889988888888877776532211 11145677789999
Q ss_pred CCCc
Q 040332 254 IWEN 257 (1210)
Q Consensus 254 v~~~ 257 (1210)
++..
T Consensus 396 IDGa 399 (877)
T KOG1969|consen 396 IDGA 399 (877)
T ss_pred ccCC
Confidence 8865
No 262
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.02 E-value=0.077 Score=56.77 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEEEEecCCcCHHHHHHHHHHHhCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKI----FDQVVFAEVSQSQDIRKIQGEIADKLGL 232 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (1210)
...++.|+|.+|+|||++|.+++........ -..++|++....++..++ .++++..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~ 79 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGL 79 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhcc
Confidence 3579999999999999999999865432221 257899998887765544 445555443
No 263
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.93 E-value=0.17 Score=56.44 Aligned_cols=148 Identities=17% Similarity=0.082 Sum_probs=79.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhcc---------------------CCCCeEEEEEecC----------CcCHHHHH
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSD---------------------KIFDQVVFAEVSQ----------SQDIRKIQ 223 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~~~~wv~vs~----------~~~~~~~~ 223 (1210)
...+.++|+.|+||||+|..++...-.. .|-| ..++.-.. ...++. .
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~~~g~~~~~I~id~-i 98 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEPENGRKLLQIKIDA-V 98 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEecccccccccccCCCcCHHH-H
Confidence 4578899999999999999999875311 1222 23333211 112333 3
Q ss_pred HHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCc-hhhhhhcCCCcceeeecC
Q 040332 224 GEIADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTARS-LDVLSRKMDSQQNFAVGI 300 (1210)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~l~~ 300 (1210)
+++.+.+..... .+++-++|+|++...+ .-..+...+.....+..+|++|.+ ..+..........+.+.+
T Consensus 99 R~l~~~~~~~p~-------~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~ 171 (325)
T PRK08699 99 REIIDNVYLTSV-------RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPA 171 (325)
T ss_pred HHHHHHHhhCcc-------cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCC
Confidence 345554432221 2334444568776542 222222222111234556666665 444433344456899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchH
Q 040332 301 LKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVS 340 (1210)
Q Consensus 301 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 340 (1210)
++.+++.+.+... + ..... ..+..++|-|+.
T Consensus 172 ~~~~~~~~~L~~~-~---~~~~~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 172 PSHEEALAYLRER-G---VAEPE-----ERLAFHSGAPLF 202 (325)
T ss_pred CCHHHHHHHHHhc-C---CCcHH-----HHHHHhCCChhh
Confidence 9999998888654 2 11111 113568898854
No 264
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.87 E-value=0.21 Score=53.45 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=90.5
Q ss_pred cccccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe-EEEEEecCCcC-HHHHHHHH
Q 040332 153 YEAFESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQ-VVFAEVSQSQD-IRKIQGEI 226 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i 226 (1210)
...++|-.++-.++-.++. .++...+.|+|+.|.|||+|...+..+.+ .|.. .+-|......- .+-.++.|
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHH
Confidence 3456677777777777775 45667889999999999999998888822 2433 33444443322 23345566
Q ss_pred HHHhCCCcccC-------Cc-----------ccc-cCccEEEEEeCCCCccc-------hhhhcccCCCCCCCeEEEEee
Q 040332 227 ADKLGLKFHEE-------SE-----------PGR-EEKKILVILDNIWENLD-------LRVVGIPHGDDHRGCKILLTA 280 (1210)
Q Consensus 227 ~~~l~~~~~~~-------~~-----------~~~-~~kr~LlvlDdv~~~~~-------~~~~~~~~~~~~~gs~iivTt 280 (1210)
.+++....... .+ .+. .+.+++.|+|..+--.. +.-+-..-....+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 66553322111 11 001 45567888887753311 111111112244567788999
Q ss_pred Cchhhh------hhcCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 281 RSLDVL------SRKMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 281 R~~~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
|-.-.- ........++-+++++.++...+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 963321 1112323366677778888877777665
No 265
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.84 E-value=0.061 Score=66.62 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=37.2
Q ss_pred ccccccHHHHHHHHHHhCC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 154 EAFESRMPTLRSILSALED-------P--DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..++|.++.++.+...+.. . ....+-++|+.|+|||++|+.++....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477999988888887751 1 235788999999999999999988763
No 266
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.76 E-value=0.13 Score=56.34 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=40.3
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-HHHHHHHH
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-IRKIQGEI 226 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 226 (1210)
+++.+. -.+...++|.|..|+|||+|++++.+... -+.++++-+.+... +.+++.++
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 444443 23456899999999999999999998643 46788888877643 34455444
No 267
>PRK06547 hypothetical protein; Provisional
Probab=94.76 E-value=0.044 Score=54.77 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=28.8
Q ss_pred HHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 166 ILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 166 l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+...+......+|+|.|..|+||||+|+.+.....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44445567788999999999999999999998754
No 268
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.73 E-value=0.013 Score=60.24 Aligned_cols=106 Identities=24% Similarity=0.266 Sum_probs=65.0
Q ss_pred cCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecC--CCc-ccCcccCCCCCCCEEecCCCCCCC---ccChhhhcCCC
Q 040332 570 VLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGC--DIR-QLPIEVGELICLKLLDLRDCSKLE---VIPPHILSNLS 643 (1210)
Q Consensus 570 ~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~~~---~~p~~~l~~L~ 643 (1210)
-.+.+|+.|++.++.++....+-.|++|++|.++.| .+. .++....++++|++|++++| ++. .+++ +..+.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p--l~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP--LKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--hhhhc
Confidence 345566677777777766677777778888888777 333 55555566677888888777 333 3444 46667
Q ss_pred cccEEEccCCCCccccccccccCccccccCCCCCEEEee
Q 040332 644 HLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLR 682 (1210)
Q Consensus 644 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 682 (1210)
+|..|+++.|..... ..-....+.-+++|..|+-.
T Consensus 117 nL~~Ldl~n~~~~~l----~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNL----DDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred chhhhhcccCCcccc----ccHHHHHHHHhhhhcccccc
Confidence 777777776655321 11122344456666666544
No 269
>PRK07667 uridine kinase; Provisional
Probab=94.72 E-value=0.044 Score=56.33 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=29.6
Q ss_pred HHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 164 RSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 164 ~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
+.+.+.+. .+...+|+|.|.+|.||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555554 345589999999999999999999987753
No 270
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.70 E-value=0.093 Score=57.39 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEec
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVS 214 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 214 (1210)
..++|.++|+.|+||||++..++.....+..-..+..|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45799999999999999999999877543111245556543
No 271
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.66 E-value=1.5 Score=50.33 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+|.++|..|+||||+|.+++...+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887654
No 272
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.27 Score=51.31 Aligned_cols=161 Identities=23% Similarity=0.269 Sum_probs=83.8
Q ss_pred ccccHHHHHHHHHHhC----------C--CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCH----
Q 040332 156 FESRMPTLRSILSALE----------D--PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDI---- 219 (1210)
Q Consensus 156 ~~gr~~~~~~l~~~l~----------~--~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~---- 219 (1210)
+-|-+..++.+...+. . ...+-|-++|++|.||+.||++|+...... |.+||...-+
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSSDLVSKWM 207 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehHHHHHHHh
Confidence 3455555555555442 1 125788999999999999999999887533 4455544322
Q ss_pred ---HHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc---------cchhhhcccC-----C--CCCCCeEEEEee
Q 040332 220 ---RKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN---------LDLRVVGIPH-----G--DDHRGCKILLTA 280 (1210)
Q Consensus 220 ---~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~---------~~~~~~~~~~-----~--~~~~gs~iivTt 280 (1210)
+.+.+.+.+.. +.+|.-+|.+|.++.. +.-..|...| . ....|.-|+-.|
T Consensus 208 GESEkLVknLFemA-----------Re~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 208 GESEKLVKNLFEMA-----------RENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred ccHHHHHHHHHHHH-----------HhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 22333333222 1678889999998632 1122222222 1 223344455566
Q ss_pred CchhhhhhcCCC--cceeeecCCCHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHHhCC
Q 040332 281 RSLDVLSRKMDS--QQNFAVGILKEVEAWS-LFKKMAGDYIEGSEFQLVAREVEKECAG 336 (1210)
Q Consensus 281 R~~~v~~~~~~~--~~~~~l~~L~~~~~~~-lf~~~~~~~~~~~~~~~~~~~i~~~c~g 336 (1210)
...-+....... ...+-+ ||.+..|.. +|.-+.|+.. +.--+..-++++++..|
T Consensus 277 NiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp-~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 277 NIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP-HVLTEQDFKELARKTEG 333 (439)
T ss_pred CCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc-cccchhhHHHHHhhcCC
Confidence 665554321111 111222 455555544 5666666322 11222334455666654
No 273
>PRK14974 cell division protein FtsY; Provisional
Probab=94.65 E-value=0.25 Score=54.91 Aligned_cols=58 Identities=28% Similarity=0.343 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC--HHHHHHHHHHHhCCCc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD--IRKIQGEIADKLGLKF 234 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~ 234 (1210)
+..+|.++|++|+||||++..++...... .+. ++.+.. ..+. ..+-++..++.++...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCe-EEEecC-CcCcHHHHHHHHHHHHHcCCce
Confidence 46899999999999999999988776543 232 333432 2222 2334556677776543
No 274
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.63 E-value=0.028 Score=53.54 Aligned_cols=22 Identities=45% Similarity=0.842 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040332 178 LGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
|.|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 275
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.61 E-value=0.12 Score=55.00 Aligned_cols=91 Identities=24% Similarity=0.337 Sum_probs=57.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh--ccCCCCeEEEEEecCCc-CHHHHHHHHHHHhCCC-------cccCCcccc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK--SDKIFDQVVFAEVSQSQ-DIRKIQGEIADKLGLK-------FHEESEPGR 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~ 242 (1210)
.....++|.|-.|+|||+|+.++.+... .+..-+.++++-+.+.. ...++..++.+.-... ..++....+
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 3456889999999999999999987754 11234778888888764 3455555554431111 011111111
Q ss_pred ----------------c-CccEEEEEeCCCCc-cchhhh
Q 040332 243 ----------------E-EKKILVILDNIWEN-LDLRVV 263 (1210)
Q Consensus 243 ----------------~-~kr~LlvlDdv~~~-~~~~~~ 263 (1210)
+ ++++|+++||+-.. ..+.++
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence 4 89999999998654 334444
No 276
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.60 E-value=0.05 Score=57.76 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=26.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
++..+|+|.|..|.|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999988764
No 277
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.59 E-value=0.12 Score=58.35 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..++.++|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 278
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.57 E-value=0.21 Score=57.03 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC-CcCHHHHHHHHHHHhCCCc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ-SQDIRKIQGEIADKLGLKF 234 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 234 (1210)
...+|+++|..|+||||++..++.........+.+.++.... .....+-+...++.++...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 347999999999999999998887643222223444444322 1222333445555555543
No 279
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.66 Score=53.66 Aligned_cols=123 Identities=17% Similarity=0.258 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCH-------HHHHHHHHHHhCCCcccCCcccccCccE
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDI-------RKIQGEIADKLGLKFHEESEPGREEKKI 247 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-------~~~~~~i~~~l~~~~~~~~~~~~~~kr~ 247 (1210)
..-|-+||++|+|||-||++|+|..+.. | ++|...--+ +.-.+.+.... +....+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGPELlNkYVGESErAVR~vFqRA-----------R~saPC 606 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGPELLNKYVGESERAVRQVFQRA-----------RASAPC 606 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCHHHHHHHhhhHHHHHHHHHHHh-----------hcCCCe
Confidence 5678899999999999999999998755 3 444322100 11111222111 156789
Q ss_pred EEEEeCCCCc-------cc------hhhhcccCCCC--CCCeEEEEeeCchhhhhhcC---CC-cceeeecCCCHHHHHH
Q 040332 248 LVILDNIWEN-------LD------LRVVGIPHGDD--HRGCKILLTARSLDVLSRKM---DS-QQNFAVGILKEVEAWS 308 (1210)
Q Consensus 248 LlvlDdv~~~-------~~------~~~~~~~~~~~--~~gs~iivTtR~~~v~~~~~---~~-~~~~~l~~L~~~~~~~ 308 (1210)
.|.||.++.. .. ..++...+... ..|.-||-.|...++....+ |. ...+-|+.-+.+|-.+
T Consensus 607 VIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 607 VIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred EEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 9999998633 11 23344444332 35777887777766643222 11 2367788888889899
Q ss_pred HHHHHhC
Q 040332 309 LFKKMAG 315 (1210)
Q Consensus 309 lf~~~~~ 315 (1210)
.++....
T Consensus 687 ILK~~tk 693 (802)
T KOG0733|consen 687 ILKTITK 693 (802)
T ss_pred HHHHHhc
Confidence 9988876
No 280
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.0021 Score=65.73 Aligned_cols=79 Identities=32% Similarity=0.358 Sum_probs=45.5
Q ss_pred CCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccCh-hhhcCCCcccEEEccC
Q 040332 574 NLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPP-HILSNLSHLEELNIGD 652 (1210)
Q Consensus 574 ~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~~l~~L~~L~~L~l~~ 652 (1210)
+.+.|++.+|.+.+..-..+++.|++|.|+-|+|+.+.. +..+++|+.|.|+.| .+.++.. ..+.+|++|+.|.+..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhcc
Confidence 444555555555555555566666666666666666542 556666666666665 4444432 2245666666666665
Q ss_pred CC
Q 040332 653 NS 654 (1210)
Q Consensus 653 n~ 654 (1210)
|.
T Consensus 98 NP 99 (388)
T KOG2123|consen 98 NP 99 (388)
T ss_pred CC
Confidence 54
No 281
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.54 E-value=1.1 Score=48.99 Aligned_cols=167 Identities=10% Similarity=0.020 Sum_probs=94.0
Q ss_pred HHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHh--------hccCCCCeEEEEEe-cCCcCHHHHHHHHHHHhCC
Q 040332 163 LRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKI--------KSDKIFDQVVFAEV-SQSQDIRKIQGEIADKLGL 232 (1210)
Q Consensus 163 ~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~ 232 (1210)
++.+.+.+..++ .++.-++|..|.||+++|..+.+.. ....|-+...++.. +......++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344445554444 4666799999999999999999886 22222223444432 2334444443 45555432
Q ss_pred CcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEee-CchhhhhhcCCCcceeeecCCCHHHHHHH
Q 040332 233 KFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTA-RSLDVLSRKMDSQQNFAVGILKEVEAWSL 309 (1210)
Q Consensus 233 ~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~l 309 (1210)
... ..+++=++|+|+++... ....+...+-.-..++.+|++| ....+..........+++.+++.++..+.
T Consensus 84 ~~~------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 84 SSF------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred CCc------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 211 02467788888887553 3444433333333456666544 44444433345567899999999998877
Q ss_pred HHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHH
Q 040332 310 FKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVT 343 (1210)
Q Consensus 310 f~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 343 (1210)
+... + .+ ++.+..++...+|.=-|+..
T Consensus 158 l~~~-~---~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 158 LLSK-N---KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHc-C---CC---hhHHHHHHHHcCCHHHHHHH
Confidence 7654 2 11 23355566666662234443
No 282
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.27 Score=59.09 Aligned_cols=130 Identities=21% Similarity=0.174 Sum_probs=75.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc--CHHHHHHHHHHHhCCCcccCCcccccCccEEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ--DIRKIQGEIADKLGLKFHEESEPGREEKKILVIL 251 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~Llvl 251 (1210)
..+.+-++|++|.|||.||+++++..+.. |-.+.+-.+...+ ..+..++++..... +.....|.+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~v~~~~l~sk~vGesek~ir~~F~~A~-----------~~~p~iiFi 341 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FISVKGSELLSKWVGESEKNIRELFEKAR-----------KLAPSIIFI 341 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEEeeCHHHhccccchHHHHHHHHHHHHH-----------cCCCcEEEE
Confidence 45689999999999999999999966533 4433222211111 11222333332221 456789999
Q ss_pred eCCCCccch-------------hhhcccCC--CCCCCeEEEEeeCchhhhhhcCC----CcceeeecCCCHHHHHHHHHH
Q 040332 252 DNIWENLDL-------------RVVGIPHG--DDHRGCKILLTARSLDVLSRKMD----SQQNFAVGILKEVEAWSLFKK 312 (1210)
Q Consensus 252 Ddv~~~~~~-------------~~~~~~~~--~~~~gs~iivTtR~~~v~~~~~~----~~~~~~l~~L~~~~~~~lf~~ 312 (1210)
|.++....+ .++...+. ....+..||-||.........+- -...+.+++-+.++..+.|+.
T Consensus 342 DEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~ 421 (494)
T COG0464 342 DEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKI 421 (494)
T ss_pred EchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHH
Confidence 998644222 22222332 22234445556655443322111 134788999999999999999
Q ss_pred HhCC
Q 040332 313 MAGD 316 (1210)
Q Consensus 313 ~~~~ 316 (1210)
+..+
T Consensus 422 ~~~~ 425 (494)
T COG0464 422 HLRD 425 (494)
T ss_pred Hhcc
Confidence 9864
No 283
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.50 E-value=0.059 Score=61.90 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=40.9
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC
Q 040332 154 EAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD 206 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~ 206 (1210)
..++||++.++.+...+..+ .-|-|.|.+|+|||++|+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 46789999999998888654 3678999999999999999998765433444
No 284
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.74 Score=53.29 Aligned_cols=92 Identities=21% Similarity=0.198 Sum_probs=58.6
Q ss_pred CcccccccHHHHHHHHHHhC---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEE-EEEecCCc-
Q 040332 152 DYEAFESRMPTLRSILSALE---D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVV-FAEVSQSQ- 217 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~- 217 (1210)
....+-|.+..+.++..++. . ...+-|-++|++|.|||.||++++++..+- |-.+. =--||.-.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f~~isApeivSGvSG 265 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--FLSISAPEIVSGVSG 265 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--eEeecchhhhcccCc
Confidence 35667788988888777664 1 235778999999999999999999998865 32111 00011111
Q ss_pred CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCC
Q 040332 218 DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWE 256 (1210)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~ 256 (1210)
--++-++++.++.. ..-.+++++|+++-
T Consensus 266 ESEkkiRelF~~A~-----------~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 266 ESEKKIRELFDQAK-----------SNAPCIVFIDEIDA 293 (802)
T ss_pred ccHHHHHHHHHHHh-----------ccCCeEEEeecccc
Confidence 11222334433332 56689999999864
No 285
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.0065 Score=59.72 Aligned_cols=87 Identities=20% Similarity=0.292 Sum_probs=44.0
Q ss_pred ccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccc
Q 040332 1067 LTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAF 1146 (1210)
Q Consensus 1067 L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~ 1146 (1210)
++.++-+++ .+.... ..-+.++++++.|.+.+|..+..-... ......++|+.|+|++|+.+++-... +..
T Consensus 103 IeaVDAsds-~I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~------~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~ 173 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLE------RLGGLAPSLQDLDLSGCPRITDGGLA-CLL 173 (221)
T ss_pred EEEEecCCc-hHHHHH-HHHHhccchhhhheeccccchhhHHHH------HhcccccchheeeccCCCeechhHHH-HHH
Confidence 555565555 333331 122455566666666666655443321 12235566666666666666654221 222
Q ss_pred cCCcccEEeeccCCCc
Q 040332 1147 KFPSLERILVNDCPSM 1162 (1210)
Q Consensus 1147 ~~~sL~~L~i~~C~~l 1162 (1210)
.+++|+.|.|++-|.+
T Consensus 174 ~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhhhhHHHHhcCchhh
Confidence 4566666666654443
No 286
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.43 E-value=0.056 Score=54.73 Aligned_cols=36 Identities=25% Similarity=0.525 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+|.++|+.|+||||+|+.++...... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45699999999999999999999988643 5666665
No 287
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.39 E-value=0.036 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+|.|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 288
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.027 Score=59.31 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
-|+|-++|++|.|||+|.++.++...++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4899999999999999999999987544
No 289
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.34 E-value=0.08 Score=55.08 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=37.4
Q ss_pred HHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHH
Q 040332 162 TLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIR 220 (1210)
Q Consensus 162 ~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (1210)
...++++.+. .++..+|+|.|+||+||+||..++......+.+=-.++-|+-|..++--
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGG 74 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGG 74 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCC
Confidence 4445555554 4577899999999999999999999988765333335555545555433
No 290
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.32 E-value=0.24 Score=60.65 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC-CcCHHHHHHHHHHHhCCCc
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ-SQDIRKIQGEIADKLGLKF 234 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 234 (1210)
.++|+++|+.|+||||.+.+++...........+..++... .....+-++...+.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 47999999999999999999998764321123455554432 1123455666666666544
No 291
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.32 E-value=0.079 Score=58.18 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDI 219 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 219 (1210)
..+++-|+|.+|+||||||.++....... -..++||+..+.++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHH
Confidence 45799999999999999999988776533 355778877665554
No 292
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.039 Score=51.30 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+-|-|.|.+|+||||+|.+++....
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 35688999999999999999996654
No 293
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.29 E-value=0.018 Score=34.99 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=12.5
Q ss_pred CCcEEEeecCCCcccCcccCC
Q 040332 596 KLEFLCLRGCDIRQLPIEVGE 616 (1210)
Q Consensus 596 ~L~~L~l~~~~l~~lp~~i~~ 616 (1210)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655544
No 294
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.037 Score=55.32 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
..+|+|-||-|+||||||+.++++.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999999873
No 295
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.24 E-value=0.042 Score=56.67 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
||+|.|.+|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999998864
No 296
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.23 E-value=0.084 Score=51.59 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
+....+.++|+.|.||||+.+.+|...+.
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 34568899999999999999999998764
No 297
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.22 E-value=0.12 Score=51.46 Aligned_cols=39 Identities=28% Similarity=0.467 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ 217 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 217 (1210)
++.|+|.+|+||||+|..+...... .-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcch
Confidence 4689999999999999999987753 24567788776554
No 298
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.18 E-value=0.14 Score=57.34 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=36.2
Q ss_pred ccccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 154 EAFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
..++|+...+.++++.+. .....-|.|+|-.|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 457898888888887775 233457889999999999999999864
No 299
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.16 E-value=0.048 Score=57.08 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999876
No 300
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.15 E-value=0.27 Score=59.68 Aligned_cols=50 Identities=14% Similarity=0.281 Sum_probs=39.9
Q ss_pred cCcccccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 151 KDYEAFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.....++|....+.++++.+. ......|-|+|..|+|||++|+.+++.-.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 345678899999988888775 23345678999999999999999998643
No 301
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.14 E-value=0.024 Score=54.63 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=57.3
Q ss_pred cccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 157 ESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD-KIFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 157 ~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
+|+...+.++.+.+. ......|.|+|..|+||+++|+.+++..... ..|..+ ..... + .+++++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~~a--- 68 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLEQA--- 68 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHHHc---
Confidence 356666666666665 2444677999999999999999999865421 222221 11111 1 2333332
Q ss_pred cccCCcccccCccEEEEEeCCCCcc--chhhhcccCC-CCCCCeEEEEeeCch
Q 040332 234 FHEESEPGREEKKILVILDNIWENL--DLRVVGIPHG-DDHRGCKILLTARSL 283 (1210)
Q Consensus 234 ~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~-~~~~gs~iivTtR~~ 283 (1210)
+.--++++|++... ....+...+. ......|+|.||+..
T Consensus 69 -----------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 -----------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 23347789988652 2233322222 124567999999853
No 302
>PRK08233 hypothetical protein; Provisional
Probab=94.13 E-value=0.043 Score=55.99 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 303
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.04 E-value=0.21 Score=57.95 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=44.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc-CHHHHHHHHHHHhCCCcccCCcccc-------cCcc
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ-DIRKIQGEIADKLGLKFHEESEPGR-------EEKK 246 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~-------~~kr 246 (1210)
.+++.++|++|+||||++..++........-..+..|+..... ...+-+...++.++........... ....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 3699999999999999999988766411112456666654321 1122333444445443321111111 2234
Q ss_pred EEEEEeCCC
Q 040332 247 ILVILDNIW 255 (1210)
Q Consensus 247 ~LlvlDdv~ 255 (1210)
=+|++|..-
T Consensus 301 DlVlIDt~G 309 (424)
T PRK05703 301 DVILIDTAG 309 (424)
T ss_pred CEEEEeCCC
Confidence 578888763
No 304
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.04 E-value=0.072 Score=56.12 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=47.0
Q ss_pred HHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHH
Q 040332 164 RSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGE 225 (1210)
Q Consensus 164 ~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 225 (1210)
.+++..+. .++..+|+|.|.||+||+||.-.+......+.+=-.++-|+-|..++--.++.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 44555554 567789999999999999999999999877665556777777777766555544
No 305
>PHA02774 E1; Provisional
Probab=94.03 E-value=0.13 Score=60.09 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=36.1
Q ss_pred HHHHHHHHhCC-CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 162 TLRSILSALED-PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 162 ~~~~l~~~l~~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
-+..+..++.. ++...+.|+|++|.|||.+|..+.+-.. -..+.||....
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~s 470 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSKS 470 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECcc
Confidence 35556666653 3456899999999999999999998764 23456676543
No 306
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.02 E-value=1.5 Score=51.93 Aligned_cols=190 Identities=18% Similarity=0.144 Sum_probs=102.6
Q ss_pred ccccccHHHHHHHHHHhC----C-CCceEEEEEcCCCCcHHHHHHHHHHHhh---ccC---CCCeEEEEEecCCcCHHHH
Q 040332 154 EAFESRMPTLRSILSALE----D-PDVNMLGIYGMGGIGKTMLAEEVARKIK---SDK---IFDQVVFAEVSQSQDIRKI 222 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~---~~~---~F~~~~wv~vs~~~~~~~~ 222 (1210)
..+-+|+.+..+|-..+. + +....+-|.|.+|.|||..+..|.+..+ .++ .|+. +.|..-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHH
Confidence 445689999999888775 3 3456999999999999999999998654 222 2332 23433344567888
Q ss_pred HHHHHHHhCCCcccCCcc-----------cccCccEEEEEeCCCCc-----cchhhhcccCCCCCCCeEEEEeeCc--hh
Q 040332 223 QGEIADKLGLKFHEESEP-----------GREEKKILVILDNIWEN-----LDLRVVGIPHGDDHRGCKILLTARS--LD 284 (1210)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~-----------~~~~kr~LlvlDdv~~~-----~~~~~~~~~~~~~~~gs~iivTtR~--~~ 284 (1210)
...|..++.......... ..+.+..++++|+++.. +.+-.|.. ....++||++|.+=. .+
T Consensus 475 Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd--Wpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 475 YEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD--WPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc--CCcCCCCceEEEEeccccc
Confidence 888888876543211110 01567788888887543 21222211 123467886664321 11
Q ss_pred hhhhcCC-------CcceeeecCCCHHHHHHHHHHHhCC--CCCCchHHHHHHHHHHHhCCcchHHHHHHH
Q 040332 285 VLSRKMD-------SQQNFAVGILKEVEAWSLFKKMAGD--YIEGSEFQLVAREVEKECAGLPVSIVTVAR 346 (1210)
Q Consensus 285 v~~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 346 (1210)
.....+. ....+...|-+.++-.+....+..+ .......+-++++|+.--|-.-.|+.+.-+
T Consensus 553 lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 1111000 1124555566666555555444432 112223333444444444444444444333
No 307
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.00 E-value=0.036 Score=59.99 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=48.3
Q ss_pred HHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCccccc
Q 040332 164 RSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESEPGRE 243 (1210)
Q Consensus 164 ~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 243 (1210)
..+++.+...+ +-+-++|+.|+|||++++...+...... | .+.-++.+...+...+++.+-..+.. .....-....
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k-~~~~~~gP~~ 98 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEK-RRGRVYGPPG 98 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECE-CTTEEEEEES
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEc-CCCCCCCCCC
Confidence 34555555454 5668999999999999999886543221 1 13344555544433333221111100 0000000017
Q ss_pred CccEEEEEeCCCCc
Q 040332 244 EKKILVILDNIWEN 257 (1210)
Q Consensus 244 ~kr~LlvlDdv~~~ 257 (1210)
+|+.++.+||+.-.
T Consensus 99 ~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 99 GKKLVLFIDDLNMP 112 (272)
T ss_dssp SSEEEEEEETTT-S
T ss_pred CcEEEEEecccCCC
Confidence 89999999998643
No 308
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.97 E-value=0.063 Score=56.29 Aligned_cols=26 Identities=31% Similarity=0.698 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
++|+|.|-||+||||++..++.-...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 57999999999999999998887653
No 309
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.90 E-value=0.14 Score=57.57 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=47.4
Q ss_pred ccccccHHHHHHHHHHhCCC--------------CceEEEEEcCCCCcHHHHHHHHHHHhhccC-CCCeEEEEEecC-Cc
Q 040332 154 EAFESRMPTLRSILSALEDP--------------DVNMLGIYGMGGIGKTMLAEEVARKIKSDK-IFDQVVFAEVSQ-SQ 217 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~--------------~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~-~~ 217 (1210)
..++|.++.++.+.-.+... ..+-|.++|++|+|||++|+.++....... +++..-|...+. ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 34678888877775444321 236789999999999999999999876430 013322332222 23
Q ss_pred CHHHHHHHHHHH
Q 040332 218 DIRKIQGEIADK 229 (1210)
Q Consensus 218 ~~~~~~~~i~~~ 229 (1210)
+.+.+++.+...
T Consensus 92 dvE~i~r~l~e~ 103 (441)
T TIGR00390 92 DVESMVRDLTDA 103 (441)
T ss_pred CHHHHHHHHHHH
Confidence 566666665543
No 310
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.89 E-value=0.1 Score=50.52 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAE 212 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 212 (1210)
..||-|.|.+|.||||||+++.+..... -..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 4689999999999999999999998754 34445553
No 311
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.89 E-value=0.11 Score=52.60 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD 218 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 218 (1210)
.|+|+|-||+||||+|.........++-|+ +.-|+..+.++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCC
Confidence 589999999999999999777665543232 34455555444
No 312
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.88 E-value=0.11 Score=57.19 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=35.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDI 219 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 219 (1210)
..+++-|+|++|+||||||.+++...... -..++||+....++.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHH
Confidence 45789999999999999999988776533 456889987776664
No 313
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.87 E-value=0.14 Score=53.64 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQ 223 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 223 (1210)
..+++-|+|.+|+|||++|.+++...... -..++|++... ++...+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHH
Confidence 35899999999999999999998876533 56789998875 5655543
No 314
>PRK09354 recA recombinase A; Provisional
Probab=93.87 E-value=0.12 Score=57.35 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
..+++-|+|++|+||||||.++....... -..++||+....++. ..+++++.+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvd 111 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVD 111 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCC
Confidence 45799999999999999999998776533 456889988777665 245555544
No 315
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.86 E-value=0.052 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987654
No 316
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.86 E-value=0.057 Score=56.34 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+...+|+|+|.+|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998754
No 317
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.83 E-value=0.12 Score=59.25 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=34.7
Q ss_pred cccccHHHHHHHHHHhC-------CC---------CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 155 AFESRMPTLRSILSALE-------DP---------DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~-------~~---------~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.++|.+..++.+...+. .. ....|.++|++|+|||++|+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 47899888887754441 10 235689999999999999999997764
No 318
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.81 E-value=0.028 Score=34.17 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=14.4
Q ss_pred cceEEEecCcccccCCccccC
Q 040332 551 QVRVINLSYVDLLSLPSSLVL 571 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~i~~ 571 (1210)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 367777777777777766554
No 319
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.81 E-value=0.16 Score=58.56 Aligned_cols=84 Identities=26% Similarity=0.382 Sum_probs=55.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-HHHHHHHHHHHhCCC-------cccCCcccc--
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-IRKIQGEIADKLGLK-------FHEESEPGR-- 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~-- 242 (1210)
.....++|.|.+|+|||||+.++.+....+ +-+.++++-+.+... +.++..++...-... ..+++...+
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 455789999999999999999999887644 568888887776543 345555554321111 111111111
Q ss_pred --------------c-CccEEEEEeCCCCc
Q 040332 243 --------------E-EKKILVILDNIWEN 257 (1210)
Q Consensus 243 --------------~-~kr~LlvlDdv~~~ 257 (1210)
+ ++++|+++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 4 89999999998543
No 320
>PTZ00301 uridine kinase; Provisional
Probab=93.81 E-value=0.059 Score=55.72 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|+|.|.+|.||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 47899999999999999999987764
No 321
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.80 E-value=0.18 Score=55.73 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=43.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDK----IFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
..+++-|+|.+|+|||+++.+++-...... .=..++||+....++.+++. +++++++.+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 357889999999999999998775433211 12468999999888888874 567777644
No 322
>PRK06762 hypothetical protein; Provisional
Probab=93.80 E-value=0.057 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 323
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.76 E-value=0.15 Score=54.82 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=42.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEEEEecCCcCHHHHHHHHHHHhC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKI----FDQVVFAEVSQSQDIRKIQGEIADKLG 231 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (1210)
..+.=|+|.+|+|||+||.+++-....... =..++|++-...|..+++. +|++..+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 468999999999999999998876543211 2359999998889888774 5777654
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.74 E-value=0.27 Score=56.75 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=39.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC-CcCHHHHHHHHHHHhCCCc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ-SQDIRKIQGEIADKLGLKF 234 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 234 (1210)
...+|.++|.+|+||||.|..++.....+ .+ .+..|++.. .....+.++.++++++...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 46799999999999999999999887643 22 344444432 1223455666777766543
No 325
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.73 E-value=0.078 Score=58.34 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
++|+|+|-||+||||+|..++.-...
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~ 27 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE 27 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999887753
No 326
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=93.72 E-value=0.55 Score=53.13 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCC---CCceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 160 MPTLRSILSALED---PDVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 160 ~~~~~~l~~~l~~---~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
+...+.+.+.+.+ ....+|+|.|.=|+||||+.+++.+..+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445566666663 568899999999999999999999988754
No 327
>PRK03839 putative kinase; Provisional
Probab=93.71 E-value=0.056 Score=55.00 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999875
No 328
>PRK13236 nitrogenase reductase; Reviewed
Probab=93.70 E-value=0.087 Score=58.26 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=26.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
+.+.++|++.|-|||||||+|..++.-...
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~ 32 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAE 32 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 567799999999999999999998877654
No 329
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.64 E-value=0.22 Score=55.47 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=43.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhcc----CCCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSD----KIFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
...++-|+|.+|+|||+|+.+++-..... ..-..++||+....|+++++. ++++.++.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 34788899999999999999987543321 112468999999999988874 467777654
No 330
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.64 E-value=0.048 Score=50.21 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCe
Q 040332 178 LGIYGMGGIGKTMLAEEVARKIKSDKIFDQ 207 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~~~~~~F~~ 207 (1210)
|-|+|.+|+||||+|+.++...... |..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~--f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS--FKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc--eeE
Confidence 5789999999999999999987644 643
No 331
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.63 E-value=0.25 Score=56.79 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=52.4
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHHHhhc-----cCCCCeEEEEEecCCcCHHHHHHHHHHHhCC-Cc-------ccCC
Q 040332 173 PDVNMLGIYGMGGIGKTMLA-EEVARKIKS-----DKIFDQVVFAEVSQSQDIRKIQGEIADKLGL-KF-------HEES 238 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~-------~~~~ 238 (1210)
.+...++|.|..|+|||+|| ..+.+.... .+.-+.++++-+++......-+.+.+++-+. .. .+++
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 34578899999999999997 556665422 1234678888888875433223333333331 10 1111
Q ss_pred cccc----------------cCccEEEEEeCCCCc
Q 040332 239 EPGR----------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 239 ~~~~----------------~~kr~LlvlDdv~~~ 257 (1210)
...+ +++..|+|+||+-..
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1111 799999999998654
No 332
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=0.004 Score=63.79 Aligned_cols=78 Identities=24% Similarity=0.242 Sum_probs=36.3
Q ss_pred CCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCc--ccCCCCCCCEEecCCCCCCCccChh----hhcCCCcc
Q 040332 572 LSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPI--EVGELICLKLLDLRDCSKLEVIPPH----ILSNLSHL 645 (1210)
Q Consensus 572 l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----~l~~L~~L 645 (1210)
++.|++|.|+-|+|+....+..+++|+.|+|+.|.|..+-. .+.++++|+.|-+..|+..+.-+.. ++.-|++|
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnL 119 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNL 119 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccc
Confidence 34444444444444444444444444444444444443322 3445556666655555444433322 24445555
Q ss_pred cEEE
Q 040332 646 EELN 649 (1210)
Q Consensus 646 ~~L~ 649 (1210)
+.|+
T Consensus 120 kKLD 123 (388)
T KOG2123|consen 120 KKLD 123 (388)
T ss_pred hhcc
Confidence 5554
No 333
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.28 Score=59.74 Aligned_cols=152 Identities=13% Similarity=0.146 Sum_probs=90.0
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCC-----CCeEEEEEe-------cCCcCH
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKI-----FDQVVFAEV-------SQSQDI 219 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~v-------s~~~~~ 219 (1210)
....++||+++++++++.|....-.=-.++|.+|||||++|.-++.+.-...- ...++-.++ +-....
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF 247 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF 247 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH
Confidence 35567899999999999997432223357899999999999998887643211 122233332 122355
Q ss_pred HHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--------chh--hhcccCCCCCCCeEEEEeeCchhh--h-
Q 040332 220 RKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--------DLR--VVGIPHGDDHRGCKILLTARSLDV--L- 286 (1210)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--------~~~--~~~~~~~~~~~gs~iivTtR~~~v--~- 286 (1210)
++-++.+++.+. +.++..|++|.+.... ..+ .+..|....+.--.|=.||-++.- .
T Consensus 248 EeRlk~vl~ev~-----------~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iE 316 (786)
T COG0542 248 EERLKAVLKEVE-----------KSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIE 316 (786)
T ss_pred HHHHHHHHHHHh-----------cCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhh
Confidence 666666666654 3448999999976431 121 222222222222235556654321 0
Q ss_pred --hhcCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 287 --SRKMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 287 --~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
....-..+.+.|+..+.+++...++-..
T Consensus 317 KD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 317 KDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 0012234578888888888888876543
No 334
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.59 E-value=0.065 Score=55.04 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999765
No 335
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.59 E-value=0.21 Score=55.70 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=43.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDK----IFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
...++-|+|.+|+|||++|..++-...... .-..++||+....+..+++ .+|++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 357888999999999999998885433111 1136899999999988876 5667776544
No 336
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.58 E-value=0.11 Score=59.25 Aligned_cols=86 Identities=20% Similarity=0.294 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCH-HHHHHHHHHHhCCC-------cccCCcccc---
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDI-RKIQGEIADKLGLK-------FHEESEPGR--- 242 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~l~~~-------~~~~~~~~~--- 242 (1210)
....++|+|..|+|||||++.+.+... .+.++.+-+.+.... .++..++...-+.. ..+++...+
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 456899999999999999999986432 366666767665432 34444443321111 011111111
Q ss_pred -------------cCccEEEEEeCCCCc-cchhhh
Q 040332 243 -------------EEKKILVILDNIWEN-LDLRVV 263 (1210)
Q Consensus 243 -------------~~kr~LlvlDdv~~~-~~~~~~ 263 (1210)
+++++|+++||+-.. ..+.++
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REI 271 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREI 271 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHH
Confidence 789999999998654 344444
No 337
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=93.55 E-value=0.078 Score=58.22 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
++|+|.|-|||||||+|..++.-..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La 27 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMA 27 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 6889999999999999998888765
No 338
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=0.011 Score=58.25 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=34.2
Q ss_pred cccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhccccccccccccccccccccccccccc
Q 040332 1063 SFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMT 1137 (1210)
Q Consensus 1063 ~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 1137 (1210)
.+++++.|.+.+|..+.+.--+-+-+-.++|+.|+|++|+.+++.-. ..+..+++|+.|.|.+.+...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-------~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-------ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-------HHHHHhhhhHHHHhcCchhhh
Confidence 45555555555555554432222222345566666666666555432 124555666666666555443
No 339
>PRK00625 shikimate kinase; Provisional
Probab=93.53 E-value=0.061 Score=53.77 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.|.++||+|+||||+|+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998865
No 340
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.46 E-value=0.22 Score=57.04 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=50.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCH-HHHHHHHHHHhCCC-------cccCCcccc--
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDI-RKIQGEIADKLGLK-------FHEESEPGR-- 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~l~~~-------~~~~~~~~~-- 242 (1210)
.....++|+|..|+|||||++++++... .+.++++-+.+.... .+...+.+..-+.. ..+++...+
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 3457889999999999999999997654 356666667665433 34443333321111 011111111
Q ss_pred --------------cCccEEEEEeCCCCc
Q 040332 243 --------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 243 --------------~~kr~LlvlDdv~~~ 257 (1210)
+++++|+++||+-..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 799999999998543
No 341
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.41 E-value=0.19 Score=62.90 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=38.6
Q ss_pred CcccccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 152 DYEAFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....++|+...+.++.+.+. .....-|-|+|..|+|||++|+.+++.-.
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 34568899988888876665 23445789999999999999999988653
No 342
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.079 Score=53.91 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=25.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
.+.+|+|.|.+|.||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45799999999999999999999987643
No 343
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.39 E-value=0.06 Score=49.09 Aligned_cols=24 Identities=46% Similarity=0.749 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 178 LGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
|-|+|.+|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999988753
No 344
>PRK04040 adenylate kinase; Provisional
Probab=93.36 E-value=0.074 Score=54.15 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|+|+|++|+||||+++.+.....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999998873
No 345
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.35 E-value=0.3 Score=46.28 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=51.6
Q ss_pred ccchhhhcCCcceEEEecCcccccCC-ccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCC
Q 040332 541 IANNFFERMIQVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGE 616 (1210)
Q Consensus 541 ~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~ 616 (1210)
++...|.++..|+.+.+.. .+..++ .++..+.+|+.+.+.++ +.. ...|.++.+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3455567777777777764 355553 33566667777777664 444 33466666677777754 4444443 3455
Q ss_pred CCCCCEEecCCCCCCCccChhhhcCCCcccEEEcc
Q 040332 617 LICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIG 651 (1210)
Q Consensus 617 l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~ 651 (1210)
+++|+.+.+..+ +..++...+.+. +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 677777776542 555665556665 67766665
No 346
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.35 E-value=1.9 Score=46.75 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=74.0
Q ss_pred HHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhcc------------CCCCeEEEEE-ecCC--cCHHHHHHH
Q 040332 162 TLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSD------------KIFDQVVFAE-VSQS--QDIRKIQGE 225 (1210)
Q Consensus 162 ~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~------------~~F~~~~wv~-vs~~--~~~~~~~~~ 225 (1210)
.-+++...+..+. ....-++|+.|+||+++|..++...-.. .|-|. .|+. .... ..++.+ ++
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~-~~i~p~~~~~~I~idqi-R~ 82 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDI-HEFSPQGKGRLHSIETP-RA 82 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCE-EEEecCCCCCcCcHHHH-HH
Confidence 3456666666554 4677799999999999999998876421 23343 3432 2221 234433 55
Q ss_pred HHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE-eeCchhhhhhcCCCcceeeecCC
Q 040332 226 IADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILL-TARSLDVLSRKMDSQQNFAVGIL 301 (1210)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TtR~~~v~~~~~~~~~~~~l~~L 301 (1210)
+.+.+..... .+++=++|+|+++.. +.+..+...+-.-..++..|+ |++-..+..........+.+.++
T Consensus 83 l~~~~~~~p~-------e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 83 IKKQIWIHPY-------ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHHhhCcc-------CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 5555543322 455667888998765 455555443332234555554 44445554333344556666654
No 347
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.32 E-value=0.21 Score=54.73 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=41.9
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHH
Q 040332 154 EAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKI 222 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 222 (1210)
+.|+=+.+....++.++.. .+.|.|.|.+|+||||+|+.++...... .+.|..+...+..++
T Consensus 45 ~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhc
Confidence 3444455556667777743 3469999999999999999999987632 234555555444444
No 348
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=93.28 E-value=0.095 Score=57.48 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
++|+|+|-||+||||+|..++.-...
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~ 27 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAE 27 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 58899999999999999998887653
No 349
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.28 E-value=0.28 Score=58.95 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=44.4
Q ss_pred cccccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 153 YEAFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
...++|+...+.++.+.+. .....-|-|+|..|+|||++|+.+++.-... -...+.|++..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~ 248 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAA 248 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEccc
Confidence 4568899988888888776 3445678899999999999999999865321 12334455444
No 350
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.27 E-value=0.093 Score=57.50 Aligned_cols=26 Identities=31% Similarity=0.708 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
++|+|+|-||+||||+|..++.-...
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57888899999999999998887653
No 351
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.26 E-value=0.12 Score=57.48 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=40.3
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 153 YEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+..++|.++.+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45788999999888777777777778899999999999999998655
No 352
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.20 E-value=0.27 Score=53.45 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....+|+|.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988766553
No 353
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.18 E-value=0.35 Score=46.93 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE------ecCCcCHHH-HHHHHHHHhCCCcccCCcccccCcc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAE------VSQSQDIRK-IQGEIADKLGLKFHEESEPGREEKK 246 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~kr 246 (1210)
...+++|+|..|.|||||++.+...... ..+.+|+. .....+... -.-.|++.+ ..+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral------------~~~p 89 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLL------------LENP 89 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeEEEEEEccCCHHHHHHHHHHHHH------------hcCC
Confidence 4479999999999999999999876532 23333331 111122111 112344444 2344
Q ss_pred EEEEEeCCCCc---cchhhhcccCCCCCCCeEEEEeeCchhhh
Q 040332 247 ILVILDNIWEN---LDLRVVGIPHGDDHRGCKILLTARSLDVL 286 (1210)
Q Consensus 247 ~LlvlDdv~~~---~~~~~~~~~~~~~~~gs~iivTtR~~~v~ 286 (1210)
-++++|+.-.. ...+.+...+... +..||++|.+...+
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 57888986543 2222222222211 24688888876654
No 354
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.16 E-value=0.26 Score=54.70 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDK----IFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
...++.|+|.+|+||||+|..++....... .-..++|++....+...+ +.++++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 368999999999999999999886432111 113579999888777776 45566666543
No 355
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.15 E-value=0.29 Score=54.89 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=33.3
Q ss_pred cccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 157 ESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 157 ~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|+...+.++.+.+. .....-|-|+|..|+||+++|+.+++.-.
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 567777777766665 23345679999999999999999987543
No 356
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.52 Score=47.86 Aligned_cols=128 Identities=22% Similarity=0.306 Sum_probs=68.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHH---HHHHhCCCcccCCcccccCccEEE
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGE---IADKLGLKFHEESEPGREEKKILV 249 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~---i~~~l~~~~~~~~~~~~~~kr~Ll 249 (1210)
.+.+-+.++|++|.|||-||++|+++-. .-|+.||...-+.....+ +++.+... .+....-+|
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht~-------c~firvsgselvqk~igegsrmvrelfvm-------arehapsii 244 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSELVQKYIGEGSRMVRELFVM-------AREHAPSII 244 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechHHHHHHHhhhhHHHHHHHHHH-------HHhcCCceE
Confidence 4577889999999999999999998654 336667654222211111 11111100 013445567
Q ss_pred EEeCCCCcc------------ch-h---hhcccCC--CCCCCeEEEEeeCchhhhhhc---CC-CcceeeecCCCHHHHH
Q 040332 250 ILDNIWENL------------DL-R---VVGIPHG--DDHRGCKILLTARSLDVLSRK---MD-SQQNFAVGILKEVEAW 307 (1210)
Q Consensus 250 vlDdv~~~~------------~~-~---~~~~~~~--~~~~gs~iivTtR~~~v~~~~---~~-~~~~~~l~~L~~~~~~ 307 (1210)
.+|.+++.. +. . ++...+. ...+.-|||+.|..-++.... .+ ....++.++-+++.-.
T Consensus 245 fmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~ 324 (404)
T KOG0728|consen 245 FMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 324 (404)
T ss_pred eeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHH
Confidence 777775431 00 0 1122222 123567888877665544221 11 1235677777776666
Q ss_pred HHHHHHh
Q 040332 308 SLFKKMA 314 (1210)
Q Consensus 308 ~lf~~~~ 314 (1210)
+.++-+.
T Consensus 325 ~ilkihs 331 (404)
T KOG0728|consen 325 DILKIHS 331 (404)
T ss_pred HHHHHhh
Confidence 6665444
No 357
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.15 Score=52.07 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=38.4
Q ss_pred CcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 152 DYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...++-|=.+.++++..... . +..+-|-++|++|.|||-+|++|+|+-..
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 34566677888887776553 1 24577889999999999999999998764
No 358
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.08 E-value=0.16 Score=61.41 Aligned_cols=81 Identities=14% Similarity=0.170 Sum_probs=61.3
Q ss_pred ccCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 040332 150 SKDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADK 229 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 229 (1210)
......++|+++.++.+...+... +.+.++|.+|+||||+|+.+.+.... .+|+..+|..- ...+...+++.++.+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 344567889999888888777554 47899999999999999999987642 34677888655 445677888888877
Q ss_pred hCCCc
Q 040332 230 LGLKF 234 (1210)
Q Consensus 230 l~~~~ 234 (1210)
++...
T Consensus 103 ~G~~~ 107 (637)
T PRK13765 103 KGKQI 107 (637)
T ss_pred cCHHH
Confidence 76543
No 359
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.05 E-value=0.19 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
...+++|+|+.|.|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 447999999999999999999864
No 360
>PRK10867 signal recognition particle protein; Provisional
Probab=93.05 E-value=0.29 Score=56.39 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
....+|.++|.+|+||||.|..++.....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34689999999999999999988887654
No 361
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.04 E-value=11 Score=42.78 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEec-CCcCHHHHHHHHHHHhCCCccc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVS-QSQDIRKIQGEIADKLGLKFHE 236 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~ 236 (1210)
.+.||-.+|.-|.||||-|.++++..+.+ .+. +.-|++. ..+...+-++.++++.+.+...
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKK-VLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CCc-eEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 46899999999999999999999988753 222 2222221 2233455667777777766543
No 362
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.03 E-value=0.35 Score=52.08 Aligned_cols=115 Identities=21% Similarity=0.143 Sum_probs=64.7
Q ss_pred HHHHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccC-----
Q 040332 164 RSILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEE----- 237 (1210)
Q Consensus 164 ~~l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~----- 237 (1210)
+.++..+. ..+..-++|+|..|.||||+.+.+...... ....+++.-.+- ...+-..+++.....-.+..
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q~~~~~r~ 174 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKV-GIVDERSEIAGCVNGVPQHDVGIRT 174 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEe-ecchhHHHHHHHhcccccccccccc
Confidence 33444443 344578999999999999999999987642 233444321000 00011123333221111000
Q ss_pred Cc-----cc-------ccCccEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhh
Q 040332 238 SE-----PG-------REEKKILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDV 285 (1210)
Q Consensus 238 ~~-----~~-------~~~kr~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v 285 (1210)
.. +. +....=++++|.+...+.+..+...+. .|..||+||-+..+
T Consensus 175 ~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 175 DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred cccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 00 00 035567899999987776666655442 47789999987665
No 363
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.02 E-value=0.23 Score=56.32 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccC--CCCeEEEEEecCC-cCHHHHHHHHHHHhCCCcccCCcccc-------c
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDK--IFDQVVFAEVSQS-QDIRKIQGEIADKLGLKFHEESEPGR-------E 243 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~-------~ 243 (1210)
..++|.++|..|+||||.+..++....... .-..+..+++... .....-++..++.++.+......... .
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 457999999999999999999988765321 1234555655432 12233466666666654322111110 2
Q ss_pred CccEEEEEeCCC
Q 040332 244 EKKILVILDNIW 255 (1210)
Q Consensus 244 ~kr~LlvlDdv~ 255 (1210)
.+.=++++|.+.
T Consensus 253 ~~~DlVLIDTaG 264 (388)
T PRK12723 253 KDFDLVLVDTIG 264 (388)
T ss_pred CCCCEEEEcCCC
Confidence 344567777764
No 364
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.96 E-value=0.31 Score=56.20 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-cCHHHHHHHHHHHhCCC
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-QDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 233 (1210)
....++.++|.+|+||||.|..++.....+..+ .++-|++... ....+-+...+.+.+.+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 346799999999999999999998875422112 3344444321 12233344555555544
No 365
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.94 E-value=0.5 Score=52.76 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=42.9
Q ss_pred HHHHHHHhCCC----CceEEEEEcCCCCcHHH-HHHHHHHHhhccCCCCeEEEEEecC-CcCHHHHHHHHHHHhCCCcc
Q 040332 163 LRSILSALEDP----DVNMLGIYGMGGIGKTM-LAEEVARKIKSDKIFDQVVFAEVSQ-SQDIRKIQGEIADKLGLKFH 235 (1210)
Q Consensus 163 ~~~l~~~l~~~----~~~vi~i~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~ 235 (1210)
...+..++.++ +.++|.+||+.|||||| ||+..+.-. ....=..+..|+... .-...+-++..++-++.+..
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 44445555443 37999999999999997 555555444 111124466666543 22344556666777766543
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.88 E-value=0.35 Score=48.77 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
++.++|++|+||||++..++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999987654
No 367
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.87 E-value=0.22 Score=45.88 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=33.4
Q ss_pred cccccHHHHHHHHHHhC----C---CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 155 AFESRMPTLRSILSALE----D---PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~----~---~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.++|..-..+.+++.+. + .+.-|++.+|..|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34566666665655554 2 356799999999999999999998873
No 368
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.86 E-value=0.39 Score=55.94 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC-CcCHHHHHHHHHHHhCCC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ-SQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 233 (1210)
.+|++++|+.|+||||++.+++.....+..-..+..|+... .....+-++..++.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 47999999999999999999998764332122345555432 123334455556666544
No 369
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.84 E-value=0.34 Score=55.78 Aligned_cols=84 Identities=26% Similarity=0.426 Sum_probs=53.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc-CHHHHHHHHHHHhCCC-------cccCCcccc--
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ-DIRKIQGEIADKLGLK-------FHEESEPGR-- 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 242 (1210)
.....++|.|..|+|||||+.++........ =+.++++-+.+.. .+.++++++...-... ..+.+...+
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4557899999999999999999988765432 2467777776654 3345555554431111 011111111
Q ss_pred ---------------cCccEEEEEeCCCCc
Q 040332 243 ---------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 243 ---------------~~kr~LlvlDdv~~~ 257 (1210)
+++++|+++||+-..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 689999999998654
No 370
>PF13245 AAA_19: Part of AAA domain
Probab=92.84 E-value=0.27 Score=41.34 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCCcHHH-HHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTM-LAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTt-La~~v~~~~ 199 (1210)
+.+++.|.|.+|.|||+ ++..+..-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788899999999995 555555444
No 371
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.81 E-value=0.32 Score=55.64 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=35.2
Q ss_pred ccccccHHHHHHHHHHhC-------C-------C----CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 154 EAFESRMPTLRSILSALE-------D-------P----DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~-------~-------~----~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..++|.++.++.+...+. . + ....|.++|++|+|||++|+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 446788888887755441 1 1 125799999999999999999997764
No 372
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.81 E-value=0.11 Score=49.86 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 489999999999999999999998754 355555666555
No 373
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.79 E-value=0.2 Score=57.33 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=47.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhC-----CC-cccCCcccc-----
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLG-----LK-FHEESEPGR----- 242 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-----~~-~~~~~~~~~----- 242 (1210)
....++|+|..|+|||||++.+....+. ...+++..--...++.++......... .- ..++....+
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3468999999999999999988765431 234444433233444444443333221 10 111111111
Q ss_pred -----------cCccEEEEEeCCCCc
Q 040332 243 -----------EEKKILVILDNIWEN 257 (1210)
Q Consensus 243 -----------~~kr~LlvlDdv~~~ 257 (1210)
+++++|+++||+-..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 799999999998654
No 374
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.78 E-value=0.081 Score=51.04 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 040332 177 MLGIYGMGGIGKTMLAEEVA 196 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~ 196 (1210)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 375
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.76 E-value=0.32 Score=55.88 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=57.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-HHHHHHHHHHHhCCC-------cccCCcccc--
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-IRKIQGEIADKLGLK-------FHEESEPGR-- 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~-- 242 (1210)
.....++|.|.+|+|||+|+.++.+..... +-+.++|+-+.+... ..++.+++...-... ..+++...+
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 345789999999999999999998876432 347888888877653 345555554321111 111111111
Q ss_pred ---------------cCccEEEEEeCCCCc-cchhhh
Q 040332 243 ---------------EEKKILVILDNIWEN-LDLRVV 263 (1210)
Q Consensus 243 ---------------~~kr~LlvlDdv~~~-~~~~~~ 263 (1210)
+++++|+++||+-.. ..+.++
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REi 251 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEV 251 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHH
Confidence 589999999998654 334443
No 376
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.72 E-value=0.21 Score=55.01 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=35.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHH
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQG 224 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 224 (1210)
.+++.+.|.|||||||+|.+.+-..... ...++-|+..+..++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~--g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES--GKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc--CCcEEEEEeCCCCchHhhhc
Confidence 4789999999999999999977666543 34477777777766665543
No 377
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.69 E-value=0.19 Score=54.11 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=30.9
Q ss_pred HHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 165 SILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 165 ~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
+..+++.+.+..+|.|+|.+|.|||||+..+.+....
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3445555678999999999999999999999998754
No 378
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.66 E-value=0.21 Score=47.04 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+|.+.|.-|+||||+++.+++....
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999998654
No 379
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.65 E-value=0.14 Score=57.03 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=42.8
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
++..++|.++.+..++....+++..-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5677899999999998888888888788999999999999999987653
No 380
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.65 E-value=0.084 Score=53.92 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
||.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 381
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.62 E-value=0.11 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...|.++|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999874
No 382
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.61 E-value=0.12 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+|.|+|.+|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999998753
No 383
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.59 E-value=0.088 Score=53.13 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+|+|.|.+|.||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 384
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.59 E-value=0.24 Score=55.80 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=47.8
Q ss_pred ccccccHHHHHHHHHHhCC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEEEEecC-Cc
Q 040332 154 EAFESRMPTLRSILSALED--------------PDVNMLGIYGMGGIGKTMLAEEVARKIKSD-KIFDQVVFAEVSQ-SQ 217 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~-~~ 217 (1210)
..++|.++.++.+..++.. -..+.|.++|++|+||||+|+.+....... -++|..-|...+. ..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4577888888887766632 014688999999999999999999886532 0123332332221 22
Q ss_pred CHHHHHHHHHHH
Q 040332 218 DIRKIQGEIADK 229 (1210)
Q Consensus 218 ~~~~~~~~i~~~ 229 (1210)
+.+.+++.+...
T Consensus 95 d~e~~ir~L~~~ 106 (443)
T PRK05201 95 DVESIIRDLVEI 106 (443)
T ss_pred CHHHHHHHHHHH
Confidence 555555555443
No 385
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.58 E-value=0.3 Score=53.06 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=42.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCC
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGL 232 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (1210)
+..+++.|+|.+|+|||++|.++....... ...++||+..+. ..++.+.... ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 456899999999999999999999987754 888999988774 4555444443 543
No 386
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.57 E-value=0.47 Score=51.19 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=58.2
Q ss_pred CcccccccHHHHHH---HHHHhCCC--CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE--ecCCcCHHHHHH
Q 040332 152 DYEAFESRMPTLRS---ILSALEDP--DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAE--VSQSQDIRKIQG 224 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~---l~~~l~~~--~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--vs~~~~~~~~~~ 224 (1210)
...+|||..+..+. +++++.++ ..+.|-|+|++|.|||.||..+.+.....-+|-...--. -.+-...+.+++
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~q 116 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQ 116 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHH
Confidence 45678898776653 56666644 468999999999999999999999998777785532111 112223466777
Q ss_pred HHHHHhCCCcc
Q 040332 225 EIADKLGLKFH 235 (1210)
Q Consensus 225 ~i~~~l~~~~~ 235 (1210)
++-+..+....
T Consensus 117 a~RraIGvrik 127 (450)
T COG1224 117 ALRRAIGVRIK 127 (450)
T ss_pred HHHHhhceEee
Confidence 77777776544
No 387
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.55 E-value=0.24 Score=50.29 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE---ecCCcCHHHHHH------HHHHHhCCCcccCCccc---
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAE---VSQSQDIRKIQG------EIADKLGLKFHEESEPG--- 241 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~------~i~~~l~~~~~~~~~~~--- 241 (1210)
...+++|+|..|.|||||++.++.... ...+.+++. +.. .+...... ++++.++..........
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 446999999999999999999997653 244544442 221 12222111 24455544321111000
Q ss_pred -----c-------cCccEEEEEeCCCCc---cchhhhcccCCCC--CCCeEEEEeeCchhhh
Q 040332 242 -----R-------EEKKILVILDNIWEN---LDLRVVGIPHGDD--HRGCKILLTARSLDVL 286 (1210)
Q Consensus 242 -----~-------~~kr~LlvlDdv~~~---~~~~~~~~~~~~~--~~gs~iivTtR~~~v~ 286 (1210)
+ ....-++++|+.-.. ...+.+...+..- ..|..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 0 455668889987543 2222222222111 1256788888876654
No 388
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.54 E-value=0.21 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 389
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.49 E-value=0.5 Score=54.66 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=39.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-HHHHHHHHHH
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-IRKIQGEIAD 228 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~ 228 (1210)
.....++|.|..|+|||||+.++....... +=+.++++-+.+... +.++..++..
T Consensus 159 gkGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~ 214 (494)
T CHL00060 159 RRGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKE 214 (494)
T ss_pred ccCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHh
Confidence 345789999999999999999999874321 127888888877643 3555555544
No 390
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.46 Score=51.83 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
-+-|.++|++|.|||-||++||..-...
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 4678899999999999999999988743
No 391
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=92.46 E-value=0.15 Score=55.88 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|++.|-||+||||+|..++....
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La 25 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFA 25 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHH
Confidence 578889999999999999887664
No 392
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.42 E-value=0.14 Score=56.83 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=39.4
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+...++|.++.++.+.-.+.+.+..-+-+.|.+|+||||+|+.+.+-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 456788999998887765655556679999999999999999998764
No 393
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.41 E-value=0.16 Score=52.43 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|.|+|+.|.||||++..+.....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999998887664
No 394
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.39 E-value=0.17 Score=58.65 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=34.0
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEE-EEEecCCc
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVV-FAEVSQSQ 217 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~ 217 (1210)
+++++. -+......|+|.+|+|||||++.+++.... .+-++.+ .+-|.+..
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERp 458 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERP 458 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCch
Confidence 444444 345578899999999999999999986643 2234433 44455543
No 395
>PRK08149 ATP synthase SpaL; Validated
Probab=92.33 E-value=0.26 Score=56.30 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=48.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-cCHHHHHHHHHHHhCCC-------cccCCcccc--
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-QDIRKIQGEIADKLGLK-------FHEESEPGR-- 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 242 (1210)
.+...++|+|..|+|||||++.++.... -+.++...+... ..+.++..+........ ..+.+...+
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 3456899999999999999999987543 344444444433 33445545554432211 111111111
Q ss_pred --------------cCccEEEEEeCCCCc
Q 040332 243 --------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 243 --------------~~kr~LlvlDdv~~~ 257 (1210)
++|++|+++||+-..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 799999999998654
No 396
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.31 E-value=0.32 Score=51.21 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=33.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD 218 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 218 (1210)
...++.|.|.+|+||||+|.+++.....+ -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 35799999999999999999999876432 34577887655543
No 397
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=92.30 E-value=0.32 Score=51.59 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKI 222 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 222 (1210)
...++.|+|.+|+|||++|.+++...... -..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 35799999999999999999999876533 4678899887 5555443
No 398
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.30 E-value=0.095 Score=54.29 Aligned_cols=23 Identities=43% Similarity=0.755 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 399
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.27 E-value=0.15 Score=50.59 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999988764
No 400
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=92.22 E-value=0.17 Score=55.41 Aligned_cols=26 Identities=31% Similarity=0.649 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
++|+|.|-||+||||+|..++.....
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~ 28 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAK 28 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68889999999999999998887753
No 401
>PRK13947 shikimate kinase; Provisional
Probab=92.20 E-value=0.11 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
-|.|+|++|+||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998753
No 402
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.19 E-value=0.11 Score=50.75 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 403
>PRK06851 hypothetical protein; Provisional
Probab=92.17 E-value=1.2 Score=50.15 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=35.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ 217 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 217 (1210)
++-.+++.|.|.+|+|||||+++++.....+ -++..++-|-+.+.
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dPd 255 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDPD 255 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Confidence 3456889999999999999999999988643 47777776655543
No 404
>PRK13949 shikimate kinase; Provisional
Probab=92.14 E-value=0.13 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
-|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 405
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.14 E-value=0.48 Score=50.54 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=52.2
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHHHhhccCCCCeE-EEEEecCCc-CHHHHHHHHHHHhCCC-------cccCCcccc
Q 040332 173 PDVNMLGIYGMGGIGKTMLA-EEVARKIKSDKIFDQV-VFAEVSQSQ-DIRKIQGEIADKLGLK-------FHEESEPGR 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~ 242 (1210)
.+...++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+++.+.-... ..++....+
T Consensus 67 grGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 67 GRGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 34578999999999999996 5555432 23454 666666654 3445555554321111 111111111
Q ss_pred ----------------cCccEEEEEeCCCCc-cchhhhc
Q 040332 243 ----------------EEKKILVILDNIWEN-LDLRVVG 264 (1210)
Q Consensus 243 ----------------~~kr~LlvlDdv~~~-~~~~~~~ 264 (1210)
+++.+|+|+||+-.. ..|.++.
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 789999999998654 4555553
No 406
>PRK04296 thymidine kinase; Provisional
Probab=92.13 E-value=0.12 Score=52.93 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCC--ccc--------ccCc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEES--EPG--------REEK 245 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~--~~~--------~~~k 245 (1210)
.++.|+|..|.||||+|..++.+.... -..++.+. ..++.......++.+++....... ... ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCC
Confidence 477899999999999999999887533 22333331 111212222334444443222100 000 0224
Q ss_pred cEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchhh
Q 040332 246 KILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLDV 285 (1210)
Q Consensus 246 r~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~v 285 (1210)
.-+||+|.+.-. ++..++...+ ...|..||+|.++...
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 458999998542 2222222221 2357789999987553
No 407
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.11 E-value=0.36 Score=58.77 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=53.6
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhC
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLG 231 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (1210)
-...++|+++.++.+...+.... -+.++|++|+||||+|+.+.+..... .|...+++. ....+...+++.++..++
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 35667899988887777766543 55599999999999999999877543 333333332 233355666777777766
Q ss_pred CC
Q 040332 232 LK 233 (1210)
Q Consensus 232 ~~ 233 (1210)
..
T Consensus 92 ~~ 93 (608)
T TIGR00764 92 RE 93 (608)
T ss_pred hH
Confidence 43
No 408
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.10 E-value=0.47 Score=53.84 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
..++.|.|.+|+|||||+.+++...... -..++|++..+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs 121 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES 121 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC
Confidence 4699999999999999999999876543 346788876543
No 409
>PRK06217 hypothetical protein; Validated
Probab=92.09 E-value=0.12 Score=52.68 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCC--CeEEEE
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSDKIF--DQVVFA 211 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv 211 (1210)
.|.|.|.+|.||||+|+++....... +| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 58999999999999999999887532 33 456664
No 410
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.06 E-value=0.12 Score=51.74 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
.|.|.|.+|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998643
No 411
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.06 E-value=0.18 Score=51.95 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=25.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
....|.++||+|.||||..+.++.+...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 45688899999999999999999988765
No 412
>PRK05439 pantothenate kinase; Provisional
Probab=92.03 E-value=0.43 Score=52.28 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+...+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988654
No 413
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=92.02 E-value=0.2 Score=55.39 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
+.++|+|.|-||+||||.+..+..-...
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~ 30 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVE 30 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 3478989999999999999888776553
No 414
>PTZ00035 Rad51 protein; Provisional
Probab=92.02 E-value=0.58 Score=52.48 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhcc----CCCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSD----KIFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
...++.|+|.+|+||||++..++-..... ..=..++||+....++.+++ ..+++.++..
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 35799999999999999999987654310 01234779988877777774 5556666543
No 415
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.02 E-value=0.12 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.693 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|+|.|..|+||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998865
No 416
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.02 E-value=0.13 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.++.|+|+.|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 417
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=92.01 E-value=0.22 Score=46.76 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=29.1
Q ss_pred CCCCceEEEEEcCCCCcHHH--HHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 171 EDPDVNMLGIYGMGGIGKTM--LAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 171 ~~~~~~vi~i~G~gGiGKTt--La~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
..++-++|+|-||+-||||. +|..||...+ |.-+|..
T Consensus 50 K~~Gh~lIGiRGmPRVGKTEsivAasVcAnKr---------W~f~SST 88 (192)
T PF11868_consen 50 KEEGHKLIGIRGMPRVGKTESIVAASVCANKR---------WLFLSST 88 (192)
T ss_pred HhcCceEEeecCCCccCchhHHHHHhhhcCce---------EEEeeHH
Confidence 46788999999999999995 6677776544 7777764
No 418
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.01 E-value=0.13 Score=51.92 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999988753
No 419
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=91.99 E-value=4 Score=44.38 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=76.4
Q ss_pred HHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEEEEEec-CCcCH
Q 040332 161 PTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSD-------------------KIFDQVVFAEVS-QSQDI 219 (1210)
Q Consensus 161 ~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs-~~~~~ 219 (1210)
..++.+...+..++. ...-++| |+||+++|..++...-.. ..++-+.|+.-. ....+
T Consensus 9 ~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~i 86 (290)
T PRK07276 9 KVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKT 86 (290)
T ss_pred HHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCH
Confidence 334555555555543 4556677 689999999888754211 112334455322 22233
Q ss_pred HHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCc-hhhhhhcCCCccee
Q 040332 220 RKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARS-LDVLSRKMDSQQNF 296 (1210)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~-~~v~~~~~~~~~~~ 296 (1210)
+. .+++.+.+..... .+++=++|+||++.. ..+..+...+-.-..++.+|++|.+ ..+..........+
T Consensus 87 dq-IR~l~~~~~~~p~-------~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i 158 (290)
T PRK07276 87 DT-IRELVKNFSQSGY-------EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158 (290)
T ss_pred HH-HHHHHHHHhhCcc-------cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceee
Confidence 33 3455555543222 455668889999865 3455554444333344555555544 55555444555677
Q ss_pred eecCCCHHHHHHHHH
Q 040332 297 AVGILKEVEAWSLFK 311 (1210)
Q Consensus 297 ~l~~L~~~~~~~lf~ 311 (1210)
.+.+ +.++..+.+.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 7766 6666555554
No 420
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=91.97 E-value=0.4 Score=54.81 Aligned_cols=91 Identities=21% Similarity=0.307 Sum_probs=56.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhcc--CCCC---------eEEEEEecCCcCHHHHHHHHHHHhC-CC-------
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSD--KIFD---------QVVFAEVSQSQDIRKIQGEIADKLG-LK------- 233 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--~~F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~------- 233 (1210)
.....++|.|-.|+|||||+.++.+..+.. ...| .++++-+.+.....+.+.+.+..-+ ..
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 345789999999999999999999776410 0022 5677777877555554444444433 11
Q ss_pred cccCCcccc-----------------cCccEEEEEeCCCCc-cchhhh
Q 040332 234 FHEESEPGR-----------------EEKKILVILDNIWEN-LDLRVV 263 (1210)
Q Consensus 234 ~~~~~~~~~-----------------~~kr~LlvlDdv~~~-~~~~~~ 263 (1210)
..+++...+ +++++|+++||+-.. ..+.++
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REi 266 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREV 266 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHH
Confidence 011111111 689999999998543 344443
No 421
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.96 E-value=0.4 Score=50.90 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCC------CeEEEEEecCCcCHHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIF------DQVVFAEVSQSQDIRKIQGEIADK 229 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~ 229 (1210)
...++.|+|.+|+|||++|.+++...... - ..++|++....++...+. +++..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~--~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~ 76 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLP--GELGGLEGKVVYIDTEGAFRPERLV-QLAVR 76 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcc--cccCCCcceEEEEecCCCCCHHHHH-HHHHH
Confidence 35799999999999999999998775422 3 567899887777765543 33333
No 422
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.95 E-value=0.12 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.618 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+|.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 423
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.95 E-value=0.34 Score=56.29 Aligned_cols=111 Identities=19% Similarity=0.302 Sum_probs=61.2
Q ss_pred HHHHHHhCCCCceEEEEEcCCCCcHHH-HHHHHHHHhhccCCCCeEEEEEecCCcCH--HHHHHHHHHHhCCCcccCCc-
Q 040332 164 RSILSALEDPDVNMLGIYGMGGIGKTM-LAEEVARKIKSDKIFDQVVFAEVSQSQDI--RKIQGEIADKLGLKFHEESE- 239 (1210)
Q Consensus 164 ~~l~~~l~~~~~~vi~i~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~- 239 (1210)
+++++.+.+ -.||.|||-.|.|||| ||+.+|.+--.. ++ .|-+.++..+ ..+.+.+++.++....+...
T Consensus 362 ~~ll~~ir~--n~vvvivgETGSGKTTQl~QyL~edGY~~---~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 362 DQLLSVIRE--NQVVVIVGETGSGKTTQLAQYLYEDGYAD---NG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHhh--CcEEEEEecCCCCchhhhHHHHHhccccc---CC--eeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 344444433 4699999999999998 777777654211 22 3334444333 34566677777544322110
Q ss_pred ---------c---cc----------------cCccEEEEEeCCCCccc-----hhhhcccCCCCCCCeEEEEeeCc
Q 040332 240 ---------P---GR----------------EEKKILVILDNIWENLD-----LRVVGIPHGDDHRGCKILLTARS 282 (1210)
Q Consensus 240 ---------~---~~----------------~~kr~LlvlDdv~~~~~-----~~~~~~~~~~~~~gs~iivTtR~ 282 (1210)
. .+ -.|--.||+|.+.+... +.-+...+ .....-|+|||+-.
T Consensus 435 sIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKliVtSAT 509 (1042)
T KOG0924|consen 435 SIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIVTSAT 509 (1042)
T ss_pred EEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH-HhhccceEEEeecc
Confidence 0 00 34555788898876521 11122222 22346789999865
No 424
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.94 E-value=0.22 Score=54.63 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=48.9
Q ss_pred CcccccccHHHHHH---HHHHhCCCC--ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-----HHH
Q 040332 152 DYEAFESRMPTLRS---ILSALEDPD--VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-----IRK 221 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~---l~~~l~~~~--~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-----~~~ 221 (1210)
...++||..+..+. +++++.+.+ .+.|-+.|++|.|||+||..+.+.....-.|-. ++.|+-++ .+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~---isgSEiyS~e~kKTE~ 98 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS---ISGSEIYSSEVKKTEA 98 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE---EEGGGG-BTTC-HHHH
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE---cccceeeecccCchHH
Confidence 35689998877664 456665554 589999999999999999999999886644433 33333332 233
Q ss_pred HHHHHHHHhCCC
Q 040332 222 IQGEIADKLGLK 233 (1210)
Q Consensus 222 ~~~~i~~~l~~~ 233 (1210)
+.+.+-+.++..
T Consensus 99 L~qa~RraIGvr 110 (398)
T PF06068_consen 99 LTQAFRRAIGVR 110 (398)
T ss_dssp HHHHHHCSEEEE
T ss_pred HHHHHHHhheEE
Confidence 444554445443
No 425
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.90 E-value=0.26 Score=53.41 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=30.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEec
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVS 214 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 214 (1210)
.+.++|.++|++|+||||++..++.....+ -..+.+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 446899999999999999999999877533 2345566544
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.89 E-value=0.53 Score=52.46 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=39.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-cCHHHHHHHHHHHhCCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-QDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 233 (1210)
+.+++.++|+.|+||||++..++.....+ -..+.+|++... ....+-++..++.++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvp 263 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVE 263 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCC
Confidence 46899999999999999999999876433 234666766432 22344555666666543
No 427
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.85 E-value=0.16 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.+++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998887766
No 428
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.85 E-value=1.9 Score=49.57 Aligned_cols=48 Identities=13% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhC-------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 160 MPTLRSILSALE-------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 160 ~~~~~~l~~~l~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...++++..||. ..+.+++-|.|++|+||||.++.+..... +..+=|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg----~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG----YQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC----ceeeeec
Confidence 344566666765 23567999999999999999999998875 3455565
No 429
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.82 E-value=0.25 Score=54.60 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCH
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDI 219 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 219 (1210)
+++.+.|-|||||||+|.+.+-....+. ..++-|+.....++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSL 43 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccH
Confidence 6889999999999999988887765431 23444555444433
No 430
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=2.1 Score=43.74 Aligned_cols=50 Identities=30% Similarity=0.322 Sum_probs=36.5
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 153 YEAFESRMPTLRSILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
..++-|.|-.+.++..... -+..+-|.++|++|.|||.||++|+++-...
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 4455566666666655543 1346788999999999999999999987643
No 431
>PRK14530 adenylate kinase; Provisional
Probab=91.79 E-value=0.14 Score=53.68 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 432
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.78 E-value=0.23 Score=50.34 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=32.2
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
|..+++|.+..+..+.-... +..-+.++|.+|+|||++|+.+..-
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHC
T ss_pred ChhhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHh
Confidence 34677898888777654443 3468999999999999999999863
No 433
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.73 E-value=0.27 Score=51.24 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=27.7
Q ss_pred HhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 169 ALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 169 ~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+..+++++|+++|..|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999998754
No 434
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=0.58 Score=51.80 Aligned_cols=75 Identities=29% Similarity=0.314 Sum_probs=50.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCc-----ccc------c
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESE-----PGR------E 243 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-----~~~------~ 243 (1210)
..+|.|-|-+|+|||||..++..+...+. .++||+-.+..... +--+++++...+.... .+. .
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQI---KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHH---HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46899999999999999999999987553 78888765553322 3345666644322111 111 6
Q ss_pred CccEEEEEeCCC
Q 040332 244 EKKILVILDNIW 255 (1210)
Q Consensus 244 ~kr~LlvlDdv~ 255 (1210)
.+.-++|+|-+.
T Consensus 167 ~~p~lvVIDSIQ 178 (456)
T COG1066 167 EKPDLVVIDSIQ 178 (456)
T ss_pred cCCCEEEEeccc
Confidence 677788888774
No 435
>PRK06936 type III secretion system ATPase; Provisional
Probab=91.71 E-value=0.47 Score=54.36 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=33.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ 217 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 217 (1210)
.+...++|.|..|+|||||.+.+++... -+.++++-+.+..
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERg 200 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERG 200 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCc
Confidence 3457899999999999999999998654 3677788777764
No 436
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.70 E-value=0.11 Score=64.98 Aligned_cols=178 Identities=19% Similarity=0.207 Sum_probs=86.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh-hcc-C------------CCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCC
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKI-KSD-K------------IFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEES 238 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~-~~~-~------------~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 238 (1210)
.+.+++.|+|+.|.||||+.+.+.... ..+ . .|+.+ +..+....++..-+......+. ...
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~~~~si~~~LStfS~~m~----~~~ 394 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIGDEQSIEQNLSTFSGHMK----NIS 394 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecChHhHHhhhhhHHHHHHH----HHH
Confidence 345799999999999999999998662 111 0 11211 1222221111111111100000 000
Q ss_pred cc-cccCccEEEEEeCCCCccc---hhh----hcccCCCCCCCeEEEEeeCchhhhhhcCCCcc--eeeecCCCHHHHHH
Q 040332 239 EP-GREEKKILVILDNIWENLD---LRV----VGIPHGDDHRGCKILLTARSLDVLSRKMDSQQ--NFAVGILKEVEAWS 308 (1210)
Q Consensus 239 ~~-~~~~kr~LlvlDdv~~~~~---~~~----~~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~--~~~l~~L~~~~~~~ 308 (1210)
.. ....++-|+++|..-...+ ... +...+. ..|+.+|+||-...+......... ...+. ++. +...
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~ 470 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS 470 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc
Confidence 00 0024678999999875422 222 222222 257889999999877532111111 11221 111 1000
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 040332 309 LFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDWKDALEQLR 365 (1210)
Q Consensus 309 lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~ 365 (1210)
|..+.-...+. ...|-.|++++ |+|-.+.--|..+. .....+++.+++.+.
T Consensus 471 -p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~-~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 471 -PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFY-GEFKEEINVLIEKLS 521 (771)
T ss_pred -eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence 11111011111 23567788776 88888888888776 344456666666654
No 437
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=91.70 E-value=0.53 Score=54.03 Aligned_cols=90 Identities=23% Similarity=0.347 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-HHHHHHHHHHHhCCC-------cccCCcccc--
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-IRKIQGEIADKLGLK-------FHEESEPGR-- 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~-- 242 (1210)
.....++|.|..|+|||||+.++....... +=+.++++-+.+... +.+++.++...-... ..+++...+
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 455789999999999999999998876532 124677887776543 355555554321111 111111111
Q ss_pred ---------------cCccEEEEEeCCCCc-cchhhh
Q 040332 243 ---------------EEKKILVILDNIWEN-LDLRVV 263 (1210)
Q Consensus 243 ---------------~~kr~LlvlDdv~~~-~~~~~~ 263 (1210)
+++++|+++||+-.. ..+.++
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REi 256 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEV 256 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHH
Confidence 578999999998654 334444
No 438
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=91.65 E-value=0.52 Score=54.69 Aligned_cols=87 Identities=13% Similarity=0.228 Sum_probs=54.5
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHHHhhccCCCCe-EEEEEecCCc-CHHHHHHHHHHHhCCC-------cccCCcccc
Q 040332 173 PDVNMLGIYGMGGIGKTMLA-EEVARKIKSDKIFDQ-VVFAEVSQSQ-DIRKIQGEIADKLGLK-------FHEESEPGR 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~ 242 (1210)
.....++|.|..|+|||||| .++.+... -|. ++++-+.+.. .+.++.+++...-... ..+++...+
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 160 GRGQRELILGDRQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred ccCCEEEeecCCCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 34578999999999999997 46776532 455 6888887764 3445555554432111 011111111
Q ss_pred ----------------cCccEEEEEeCCCCc-cchhhh
Q 040332 243 ----------------EEKKILVILDNIWEN-LDLRVV 263 (1210)
Q Consensus 243 ----------------~~kr~LlvlDdv~~~-~~~~~~ 263 (1210)
++++.|+|+||+-.. ..+.++
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REi 273 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYREL 273 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHH
Confidence 899999999998654 444444
No 439
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.63 E-value=0.17 Score=51.76 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|.|.|.+|+||||+|+.++.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998853
No 440
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.61 E-value=0.23 Score=50.65 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEV 213 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 213 (1210)
.++|.|+|+.|+|||||++.+......+ |...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeecc
Confidence 4789999999999999999999987633 755555443
No 441
>PRK13975 thymidylate kinase; Provisional
Probab=91.52 E-value=0.16 Score=52.51 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
..|.|.|+.|+||||+|+.++.....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998763
No 442
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.50 E-value=0.37 Score=50.61 Aligned_cols=112 Identities=20% Similarity=0.217 Sum_probs=62.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC-----CcCHHHHHHHHHHHhCCCcccCC-------c--
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ-----SQDIRKIQGEIADKLGLKFHEES-------E-- 239 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~~~-------~-- 239 (1210)
+..+++|||..|.||||+|+.+..-.+.. .+.++..-.+ .....+-..++++.++....... .
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45799999999999999999999876532 3334433111 11223344556666553321110 0
Q ss_pred ccc-------cCccEEEEEeCCCCccch---hhhcccCC--CCCCCeEEEEeeCchhhhhh
Q 040332 240 PGR-------EEKKILVILDNIWENLDL---RVVGIPHG--DDHRGCKILLTARSLDVLSR 288 (1210)
Q Consensus 240 ~~~-------~~kr~LlvlDdv~~~~~~---~~~~~~~~--~~~~gs~iivTtR~~~v~~~ 288 (1210)
..+ .-+.=++|.|..-+.-+. .++...+. ....|-..+..|-+-.|+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 011 456668999986554221 11111111 11235667888888777654
No 443
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=91.46 E-value=0.33 Score=46.36 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEec
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVS 214 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 214 (1210)
--+.|+|-||+||+++.+.++.-.-. +.+...+||+.-
T Consensus 21 iK~vivGng~VGKssmiqryCkgifT-kdykktIgvdfl 58 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFT-KDYKKTIGVDFL 58 (246)
T ss_pred EEEEEECCCccchHHHHHHHhccccc-cccccccchhhh
Confidence 34679999999999999999976533 235667888643
No 444
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.45 E-value=0.43 Score=52.64 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC-CcCHHHHHHHHHHHhCCC-------cccCCcccc---
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ-SQDIRKIQGEIADKLGLK-------FHEESEPGR--- 242 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 242 (1210)
....++|+|..|.|||||.+.+..... -+..+..-+.. ...+.++..+....-+.. ..+++...+
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 446889999999999999999887543 23344444443 234444444443332111 011111111
Q ss_pred -------------cCccEEEEEeCCCCc
Q 040332 243 -------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 243 -------------~~kr~LlvlDdv~~~ 257 (1210)
++|.+|+++||+-..
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 788999999997543
No 445
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.37 Score=57.24 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=56.3
Q ss_pred cccccccHHHHHHHHHHhC---------CCC---ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC--
Q 040332 153 YEAFESRMPTLRSILSALE---------DPD---VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-- 218 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~---------~~~---~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-- 218 (1210)
-.++-|-++.+.+|.+-+. ..+ ..-|-++|++|.|||-+|++|+.+..-. |++|....-
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGPELLN 743 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGPELLN 743 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCHHHHH
Confidence 3456688888888887764 122 4578889999999999999999987643 444433210
Q ss_pred -----HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc
Q 040332 219 -----IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN 257 (1210)
Q Consensus 219 -----~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~ 257 (1210)
-++=.+++.+. .+..+.+.|.||.+++.
T Consensus 744 MYVGqSE~NVR~VFer-----------AR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 744 MYVGQSEENVREVFER-----------ARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHhcchHHHHHHHHHH-----------hhccCCeEEEecccccc
Confidence 01111122211 11678899999998754
No 446
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.34 E-value=0.18 Score=50.59 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...|.|+|+.|+||||+|+.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35699999999999999999998764
No 447
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.30 E-value=0.21 Score=51.66 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+...+|.|+|.+|+||||+|+.+.....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35668999999999999999999998764
No 448
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.29 E-value=0.15 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999854
No 449
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=91.25 E-value=2.2 Score=50.97 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=38.4
Q ss_pred cccccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 153 YEAFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...++|....+.++.+.+. .....-|-|.|..|+||+++|+.+++.-
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 4568899988888887775 3445688999999999999999999754
No 450
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.24 E-value=0.18 Score=50.11 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 178 LGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
|.|.|.+|+||||+++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998753
No 451
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.24 E-value=0.18 Score=49.79 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 040332 178 LGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
|.|+|++|.||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 452
>PRK13695 putative NTPase; Provisional
Probab=91.23 E-value=0.27 Score=49.59 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
.|+|+|.+|+|||||++.+++..... .+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 47899999999999999999876542 24444444
No 453
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.23 E-value=0.14 Score=28.83 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=6.5
Q ss_pred CCcEEEeecCCCcccC
Q 040332 596 KLEFLCLRGCDIRQLP 611 (1210)
Q Consensus 596 ~L~~L~l~~~~l~~lp 611 (1210)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 454
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.22 E-value=0.31 Score=55.79 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
....++|+|..|+|||||++.+.+... .+..+.+.+.+.
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer 174 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGER 174 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecC
Confidence 456899999999999999998886543 344445555554
No 455
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.21 E-value=0.18 Score=49.29 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
+-|.++||.|+||||+.+.+++.....
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 458899999999999999999887643
No 456
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.19 E-value=0.66 Score=49.28 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
...++.|.|.+|+||||+|.++....-.+ -..++|++.... ...+.+. +++++..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~--~~~i~~~-~~~~g~~ 73 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES--RESIIRQ-AAQFGMD 73 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH-HHHhCCC
Confidence 45799999999999999999987654322 356788876443 3444433 5555543
No 457
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=91.18 E-value=0.59 Score=53.96 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=52.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeE-EEEEecCCc-CHHHHHHHHHHHhCCC-------cccCCcccc-
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQV-VFAEVSQSQ-DIRKIQGEIADKLGLK-------FHEESEPGR- 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 242 (1210)
.....++|.|..|+||||||....-+.. .-|.+ +++-+.+.. .+.++.+++...-... ..+++...+
T Consensus 139 grGQR~~I~g~~g~GKt~Lal~~I~~q~---~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 139 GRGQRELIIGDRQTGKTAVATDTILNQK---GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred ccCCEEEeecCCCCCHHHHHHHHHHhcc---cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 4457899999999999999654333322 24554 777787654 3445555544321111 011111111
Q ss_pred ---------------cCccEEEEEeCCCCc-cchhhh
Q 040332 243 ---------------EEKKILVILDNIWEN-LDLRVV 263 (1210)
Q Consensus 243 ---------------~~kr~LlvlDdv~~~-~~~~~~ 263 (1210)
++++.|+|+||+-.. ..+.++
T Consensus 216 ~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A~A~REi 252 (485)
T CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQM 252 (485)
T ss_pred HHHHHHhhHHHHHHHcCCCEEEEEcChhHHHHHHHHH
Confidence 799999999999654 445544
No 458
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.14 E-value=0.52 Score=54.22 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc-CHHHHHHHHHHHhCCCc-------ccCCcccc---
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ-DIRKIQGEIADKLGLKF-------HEESEPGR--- 242 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 242 (1210)
....++|+|..|+|||||++.+..... .+.++...+.... ...++...+...-+... .++....+
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 456899999999999999999876432 3454444444433 33444444443322111 11111111
Q ss_pred -------------cCccEEEEEeCCCCc
Q 040332 243 -------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 243 -------------~~kr~LlvlDdv~~~ 257 (1210)
+++++|+++||+-..
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 799999999998654
No 459
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=91.14 E-value=0.32 Score=53.28 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=42.1
Q ss_pred ccccccHHHHHHHHHHhC------CCCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 154 EAFESRMPTLRSILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
..|+|.++.++++++.+. +..-+++-++|+.|.||||||..+.+-.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 378899999999999886 346789999999999999999999987753
No 460
>PRK13948 shikimate kinase; Provisional
Probab=91.13 E-value=0.21 Score=50.39 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+.|.++|+.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4557899999999999999999998865
No 461
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=91.12 E-value=0.34 Score=55.56 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=33.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc-CHHHHHHH
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ-DIRKIQGE 225 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~ 225 (1210)
.....++|+|..|+|||||++.+.+... .+..+++.+.+.. .+.+.+.+
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~ 202 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDF 202 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHH
Confidence 4457899999999999999998886543 4555666555543 33344444
No 462
>PRK14527 adenylate kinase; Provisional
Probab=91.09 E-value=0.22 Score=51.20 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
....+|.|+|.+|.||||+|+.++.....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34578999999999999999999987753
No 463
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.08 E-value=0.42 Score=49.39 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=82.2
Q ss_pred ccCCCCCcEEEecCccCCC------CCCCCCCCCCcEEEeecCCCc----ccC-------cccCCCCCCCEEecCCCCCC
Q 040332 569 LVLLSNLRTLSLYYCKLLD------ISGIGDLKKLEFLCLRGCDIR----QLP-------IEVGELICLKLLDLRDCSKL 631 (1210)
Q Consensus 569 i~~l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~----~lp-------~~i~~l~~L~~L~l~~~~~~ 631 (1210)
+..+..+..++|++|.+.. ...|.+-.+|+..+++.-... ++| +.+-++++|+..++++|..-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4457789999999999876 244777889999988864222 333 35668899999999999555
Q ss_pred CccChh---hhcCCCcccEEEccCCCCccccccccc------cCccccccCCCCCEEEeeccCCCCCCCc
Q 040332 632 EVIPPH---ILSNLSHLEELNIGDNSFYHWEVEVDG------VKNASLNELKHLTSLQLRIKDINCLPRG 692 (1210)
Q Consensus 632 ~~~p~~---~l~~L~~L~~L~l~~n~~~~~~~~~~~------~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 692 (1210)
...|+. .+++-+.|.+|.+.+|.+-...-..-+ .......+.+.|++..+..|++...+..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence 555553 367889999999998865221100000 1112334556788887777776655543
No 464
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.05 E-value=0.18 Score=49.37 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEE
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVF 210 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 210 (1210)
|++|+|+.|+||||++.++....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 58999999999999999999987643 3444433
No 465
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=90.93 E-value=0.2 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 040332 178 LGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997654
No 466
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.93 E-value=0.2 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34789999999999999999999865
No 467
>PRK05922 type III secretion system ATPase; Validated
Probab=90.92 E-value=0.63 Score=53.33 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=46.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc-CHHHHHHHHHHHhCCCc-------ccCCcccc---
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ-DIRKIQGEIADKLGLKF-------HEESEPGR--- 242 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 242 (1210)
....++|+|..|+|||||.+.+..... .+..+++-+++.. ...+.+.+......... .+++...+
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 446799999999999999999986543 3444444444432 23334433333222111 01111111
Q ss_pred -------------cCccEEEEEeCCCCc
Q 040332 243 -------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 243 -------------~~kr~LlvlDdv~~~ 257 (1210)
+++++|+++||+-..
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 799999999998654
No 468
>PRK06820 type III secretion system ATPase; Validated
Probab=90.91 E-value=0.64 Score=53.48 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
....++|+|..|+|||||++.+..... -+.+++.-+.+.
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~~----~dv~V~~~iGer 200 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADSA----ADVMVLALIGER 200 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccCC----CCEEEEEEEccC
Confidence 446889999999999999998886432 345555556555
No 469
>PRK09099 type III secretion system ATPase; Provisional
Probab=90.89 E-value=0.46 Score=54.69 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=47.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC-CcCHHHHHHHHHHHhCCC-------cccCCcccc--
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ-SQDIRKIQGEIADKLGLK-------FHEESEPGR-- 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 242 (1210)
.....++|.|..|+|||||++.++..... +..+.+-+.+ ...+.++.+.+...-+.. ..+.+...+
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 35578999999999999999999875432 3333333333 333444444443321111 011111111
Q ss_pred --------------cCccEEEEEeCCCCc
Q 040332 243 --------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 243 --------------~~kr~LlvlDdv~~~ 257 (1210)
+++++|+++||+-..
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 789999999998654
No 470
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.87 E-value=0.59 Score=51.90 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=31.0
Q ss_pred HHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 163 LRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 163 ~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
..++++.+. .++..+|+|.|.+|+||||++..+....+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 344555543 4567899999999999999999988877643
No 471
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=90.86 E-value=0.28 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.720 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
+|+|.|-||+||||+|..++.....
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~ 26 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAK 26 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6888999999999999998887753
No 472
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=90.84 E-value=0.87 Score=50.01 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKF 234 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 234 (1210)
..+++-|+|..|+||||||..+....... -..++||+....++.. .+.+++.+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl 105 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDL 105 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--G
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccc
Confidence 35799999999999999999999877543 4668999887776643 345555543
No 473
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=90.83 E-value=0.72 Score=55.44 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=36.3
Q ss_pred CcccccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 152 DYEAFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.+..++|....+.++++.+. .....-|-|+|..|+||+++|+.+++.-
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s 251 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS 251 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45578888888777776664 2233457899999999999999987643
No 474
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.73 E-value=0.18 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.|+|+|+.|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998643
No 475
>PRK13946 shikimate kinase; Provisional
Probab=90.69 E-value=0.21 Score=50.89 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+.|.++|+.|+||||+|+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999875
No 476
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=90.68 E-value=0.54 Score=50.13 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh-----ccCCCCeEEEEEecCCcCHHHHHHHHHH
Q 040332 163 LRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK-----SDKIFDQVVFAEVSQSQDIRKIQGEIAD 228 (1210)
Q Consensus 163 ~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 228 (1210)
.+.+...+.... +..|+|++|.||||++..+..... ....-+..+-++......+..++..+.+
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 344444443332 789999999999987777766651 1122344455544444444555544443
No 477
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.66 E-value=0.17 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 040332 178 LGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
|.|+|+.|+||||+|+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 478
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.66 E-value=0.46 Score=54.41 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....++|+|..|+|||||++.+....+
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~ 165 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD 165 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC
Confidence 446899999999999999998887543
No 479
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=90.66 E-value=0.24 Score=48.25 Aligned_cols=28 Identities=43% Similarity=0.698 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
.++++|+|+.|.|||||..++....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 3799999999999999999999988765
No 480
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=90.65 E-value=0.58 Score=48.69 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.....|+|+|.+|+|||||...+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 455789999999999999999988764
No 481
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.63 E-value=0.21 Score=48.83 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 482
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=90.62 E-value=0.2 Score=49.89 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 040332 178 LGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~ 198 (1210)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999977
No 483
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.59 E-value=0.25 Score=50.68 Aligned_cols=27 Identities=41% Similarity=0.449 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+++|+|..|.||||||+.+..-.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 456999999999999999999997665
No 484
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.56 E-value=0.23 Score=50.38 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+.++|.|+|+.|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998754
No 485
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=90.55 E-value=0.5 Score=52.39 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=29.4
Q ss_pred HHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 165 SILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 165 ~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
.+++.+. .....+|+|+|.+|+||||++..+......+
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443 3567899999999999999999999876543
No 486
>PLN02200 adenylate kinase family protein
Probab=90.51 E-value=0.25 Score=52.26 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+|.|.|++|+||||+|+.+.....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987654
No 487
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=90.50 E-value=0.62 Score=48.23 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|+|.|+.|+||||+++.+++...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999875
No 488
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.48 E-value=0.37 Score=46.95 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 163 LRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 163 ~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
++++.+++.+ +++.++|..|+|||||...+..+.
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666666644 799999999999999999998764
No 489
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=90.39 E-value=0.6 Score=52.29 Aligned_cols=57 Identities=21% Similarity=0.382 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCC----CeEEEEEecCCcCHHHHHHHHHHHhC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIF----DQVVFAEVSQSQDIRKIQGEIADKLG 231 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (1210)
...++-|+|.+|+|||++|.+++........+ ..++||+....++..++. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 35789999999999999999998765322111 468999998888887764 4445443
No 490
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.36 E-value=0.21 Score=51.04 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 491
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=90.33 E-value=0.24 Score=54.35 Aligned_cols=37 Identities=27% Similarity=0.509 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEec
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVS 214 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 214 (1210)
+.|+|+|-||+||||+|..++.-...+. + .++-|+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D 37 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCD 37 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCC
Confidence 4789999999999999999998776442 3 34444443
No 492
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=90.32 E-value=0.95 Score=52.48 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=54.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC--eEEEEEecCCc-CHHHHHHHHHHHhCCC-------cccCCcccc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD--QVVFAEVSQSQ-DIRKIQGEIADKLGLK-------FHEESEPGR 242 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~ 242 (1210)
.....++|.|..|+|||||+.++.+.......+. .++++-+.+.. .+.+++.++...-... ..+.+...+
T Consensus 139 g~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 139 VRGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred ccCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 3456889999999999999999998764321111 56677776654 3445555554321111 011111111
Q ss_pred -----------------cCccEEEEEeCCCCc-cchhhh
Q 040332 243 -----------------EEKKILVILDNIWEN-LDLRVV 263 (1210)
Q Consensus 243 -----------------~~kr~LlvlDdv~~~-~~~~~~ 263 (1210)
+++++|+++||+-.. ..+.++
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REI 257 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREI 257 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHH
Confidence 688999999998654 344444
No 493
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.32 E-value=0.61 Score=52.18 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEEEEecCCcCHHHHHHHHHHHhC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKI----FDQVVFAEVSQSQDIRKIQGEIADKLG 231 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (1210)
...++-|+|.+|+||||++.+++........ =..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3578899999999999999999877542111 1368999998888877754 4455543
No 494
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=90.32 E-value=0.67 Score=47.79 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
..|+|.|..|+||||+|+.+++....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988764
No 495
>PRK15453 phosphoribulokinase; Provisional
Probab=90.29 E-value=0.3 Score=52.07 Aligned_cols=28 Identities=14% Similarity=0.372 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+..+|+|.|.+|+||||+|+.+.+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999997654
No 496
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=90.26 E-value=0.52 Score=45.74 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=27.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 171 EDPDVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 171 ~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
..++..||-+.|..|.||||+|.+++.....+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 34667899999999999999999999987643
No 497
>PRK13768 GTPase; Provisional
Probab=90.21 E-value=0.44 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
.++.|.|.||+||||++..+......
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh
Confidence 57899999999999999999887754
No 498
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=90.19 E-value=0.53 Score=54.45 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.....++|+|..|+|||||++.+.....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~ 183 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTS 183 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 4557999999999999999998887543
No 499
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=90.18 E-value=1.1 Score=53.07 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=42.1
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-HHHHHHHHHH
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-IRKIQGEIAD 228 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~ 228 (1210)
+++.|. -.....++|-|..|+|||+|++++.+... -|.++++-+.+..+ +.+++.++-+
T Consensus 217 vID~l~Pi~kGq~~~Ipg~~G~GKTvl~~~iak~a~----adivVyvg~GERg~E~~e~l~ef~~ 277 (586)
T PRK04192 217 VIDTFFPVAKGGTAAIPGPFGSGKTVTQHQLAKWAD----ADIVIYVGCGERGNEMTEVLEEFPE 277 (586)
T ss_pred hhhcccccccCCeEEEecCCCCCHHHHHHHHHhcCC----CCEEEEEEcCcChHHHHHHHHHHHh
Confidence 444443 23445699999999999999999987643 47899998887654 4555555544
No 500
>PRK06761 hypothetical protein; Provisional
Probab=90.14 E-value=0.35 Score=52.17 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEE
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVF 210 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 210 (1210)
++|.|.|++|+||||+|+.+++..... .++...+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~-g~~v~~~ 37 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN-GIEVELY 37 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC-ceEEEEE
Confidence 589999999999999999999987632 3444443
Done!