Query 040332
Match_columns 1210
No_of_seqs 629 out of 5633
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.8E-45 9.5E-50 442.5 12.4 301 157-479 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.6E-36 8.8E-41 362.7 19.1 271 156-470 130-436 (1221)
3 3rgz_A Protein brassinosteroid 100.0 4.8E-36 1.6E-40 379.6 22.6 574 500-1183 49-714 (768)
4 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-35 7.7E-40 398.9 27.6 304 150-477 120-452 (1249)
5 3rgz_A Protein brassinosteroid 100.0 1.1E-35 3.9E-40 376.2 22.5 577 523-1201 50-703 (768)
6 1ziw_A TOLL-like receptor 3; i 100.0 5.9E-33 2E-37 348.9 33.0 546 541-1182 40-618 (680)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-32 6.1E-37 344.5 35.0 552 550-1183 25-594 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-32 4.3E-37 341.1 30.0 175 505-692 15-199 (606)
9 3t6q_A CD180 antigen; protein- 100.0 5.4E-32 1.8E-36 335.5 28.4 496 540-1182 47-556 (606)
10 1z6t_A APAF-1, apoptotic prote 100.0 7.6E-32 2.6E-36 331.7 28.6 298 151-475 121-450 (591)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-31 5.6E-36 331.1 28.0 512 498-1161 29-557 (606)
12 3t6q_A CD180 antigen; protein- 100.0 9.5E-30 3.2E-34 315.3 34.9 486 551-1183 34-533 (606)
13 3j0a_A TOLL-like receptor 5; m 100.0 8.3E-29 2.8E-33 316.8 33.8 389 499-1000 22-434 (844)
14 2z63_A TOLL-like receptor 4, v 100.0 1.9E-28 6.5E-33 301.6 32.1 202 937-1183 324-528 (570)
15 3j0a_A TOLL-like receptor 5; m 100.0 9.8E-28 3.4E-32 306.8 34.6 500 549-1182 23-556 (844)
16 2z63_A TOLL-like receptor 4, v 100.0 2.2E-28 7.4E-33 301.1 26.6 465 541-1161 43-530 (570)
17 2z81_A CD282 antigen, TOLL-lik 100.0 8.1E-28 2.8E-32 294.2 29.2 484 553-1184 8-508 (549)
18 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-28 8E-33 299.0 21.4 471 550-1165 26-513 (549)
19 2z7x_B TOLL-like receptor 1, v 99.9 4.9E-27 1.7E-31 284.9 22.4 453 553-1183 3-478 (520)
20 4eco_A Uncharacterized protein 99.9 1.1E-26 3.7E-31 286.8 21.7 96 588-691 199-322 (636)
21 4g8a_A TOLL-like receptor 4; l 99.9 1E-25 3.4E-30 281.6 27.7 134 551-691 53-190 (635)
22 4ecn_A Leucine-rich repeat pro 99.9 5.2E-26 1.8E-30 284.1 22.7 66 588-654 441-526 (876)
23 4g8a_A TOLL-like receptor 4; l 99.9 8.5E-25 2.9E-29 273.2 32.4 526 554-1182 35-576 (635)
24 2z7x_B TOLL-like receptor 1, v 99.9 6.6E-26 2.3E-30 274.9 19.2 437 550-1135 21-480 (520)
25 4ecn_A Leucine-rich repeat pro 99.9 1.2E-24 4.2E-29 271.7 25.2 153 960-1162 673-840 (876)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-25 1.4E-29 270.1 20.2 457 549-1182 30-506 (562)
27 4eco_A Uncharacterized protein 99.9 1.2E-25 4.3E-30 277.3 15.3 357 545-1007 201-601 (636)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-24 3.6E-29 266.5 20.1 124 550-686 52-181 (562)
29 1o6v_A Internalin A; bacterial 99.9 4.7E-23 1.6E-27 245.3 28.1 122 547-682 43-164 (466)
30 1jl5_A Outer protein YOPM; leu 99.9 1.4E-23 4.7E-28 247.0 18.2 284 549-972 10-309 (454)
31 1jl5_A Outer protein YOPM; leu 99.9 5.7E-23 1.9E-27 241.8 22.1 131 820-1000 215-345 (454)
32 1o6v_A Internalin A; bacterial 99.9 2.6E-22 9.1E-27 238.8 26.6 145 819-1004 242-386 (466)
33 3v47_A TOLL-like receptor 5B a 99.9 2.8E-22 9.6E-27 238.7 25.0 132 550-689 30-169 (455)
34 3o6n_A APL1; leucine-rich repe 99.9 2.6E-21 8.9E-26 224.8 25.2 304 549-972 44-351 (390)
35 4fmz_A Internalin; leucine ric 99.9 4.6E-21 1.6E-25 219.1 26.9 306 546-972 40-345 (347)
36 2id5_A Lingo-1, leucine rich r 99.9 5.1E-21 1.8E-25 229.0 27.7 125 553-687 14-141 (477)
37 3v47_A TOLL-like receptor 5B a 99.9 3.6E-21 1.2E-25 229.2 25.4 379 506-973 15-408 (455)
38 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-21 5.4E-26 229.7 20.9 121 546-684 38-158 (457)
39 3o6n_A APL1; leucine-rich repe 99.9 3.4E-21 1.2E-25 223.8 23.0 309 520-953 42-354 (390)
40 4fmz_A Internalin; leucine ric 99.9 9.7E-21 3.3E-25 216.4 26.2 285 546-951 62-346 (347)
41 3bz5_A Internalin-J, INLJ; leu 99.9 3E-21 1E-25 227.3 20.9 263 500-863 41-303 (457)
42 3oja_B Anopheles plasmodium-re 99.9 1.1E-20 3.8E-25 231.9 25.1 126 820-972 232-357 (597)
43 3oja_B Anopheles plasmodium-re 99.9 8.3E-21 2.8E-25 233.0 23.0 306 522-952 50-359 (597)
44 2id5_A Lingo-1, leucine rich r 99.8 1.2E-20 4E-25 225.9 20.5 299 550-952 32-334 (477)
45 3ogk_B Coronatine-insensitive 99.8 3.8E-21 1.3E-25 237.5 5.6 85 817-915 267-351 (592)
46 3ogk_B Coronatine-insensitive 99.8 1.4E-19 4.6E-24 223.5 15.3 259 843-1158 267-547 (592)
47 4fcg_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 200.8 15.9 223 548-888 79-310 (328)
48 1xku_A Decorin; proteoglycan, 99.8 6E-18 2.1E-22 191.4 26.5 134 550-691 52-188 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 3E-18 1E-22 194.1 21.0 131 551-690 55-188 (332)
50 1xku_A Decorin; proteoglycan, 99.8 2E-17 6.9E-22 187.1 23.8 126 549-687 30-158 (330)
51 2p1m_B Transport inhibitor res 99.8 2.8E-19 9.7E-24 220.9 6.8 165 958-1159 370-541 (594)
52 1ogq_A PGIP-2, polygalacturona 99.7 8.1E-18 2.8E-22 188.1 15.0 130 550-687 50-187 (313)
53 2ft3_A Biglycan; proteoglycan, 99.7 8.4E-17 2.9E-21 182.1 22.7 264 550-917 33-305 (332)
54 4fcg_A Uncharacterized protein 99.7 3.6E-17 1.2E-21 183.9 19.0 83 571-655 79-162 (328)
55 3g06_A SSPH2 (leucine-rich rep 99.7 2E-16 6.9E-21 191.3 25.1 260 549-952 39-298 (622)
56 1z7x_W Ribonuclease inhibitor; 99.7 4.5E-19 1.5E-23 211.5 0.6 59 550-608 3-69 (461)
57 2p1m_B Transport inhibitor res 99.7 1.6E-18 5.3E-23 214.2 4.2 130 545-683 100-244 (594)
58 1ogq_A PGIP-2, polygalacturona 99.7 5.1E-17 1.7E-21 181.6 12.4 175 501-687 50-234 (313)
59 2z80_A TOLL-like receptor 2, v 99.7 3.3E-16 1.1E-20 178.9 18.9 133 550-689 52-189 (353)
60 3zyi_A Leucine-rich repeat-con 99.7 8.4E-16 2.9E-20 181.9 21.3 134 550-690 75-212 (452)
61 2z80_A TOLL-like receptor 2, v 99.7 5E-16 1.7E-20 177.4 17.9 127 549-685 30-160 (353)
62 3zyj_A Leucine-rich repeat-con 99.7 1.5E-15 5.1E-20 179.0 22.5 122 552-683 45-169 (440)
63 3zyi_A Leucine-rich repeat-con 99.7 1.5E-15 5.3E-20 179.6 22.6 123 551-683 55-180 (452)
64 3zyj_A Leucine-rich repeat-con 99.7 1.1E-15 3.8E-20 180.2 20.2 134 550-690 64-201 (440)
65 1z7x_W Ribonuclease inhibitor; 99.7 8.1E-18 2.8E-22 200.6 1.7 354 544-973 22-411 (461)
66 3g06_A SSPH2 (leucine-rich rep 99.7 3.5E-15 1.2E-19 180.5 24.4 117 550-690 61-177 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.6 7.5E-17 2.6E-21 180.8 6.6 255 541-897 25-280 (317)
68 2z66_A Variable lymphocyte rec 99.6 9.3E-16 3.2E-20 171.4 15.2 126 551-684 29-160 (306)
69 1ozn_A Reticulon 4 receptor; N 99.6 1.5E-15 5.2E-20 167.6 15.4 140 541-688 47-191 (285)
70 1ozn_A Reticulon 4 receptor; N 99.6 2E-15 7E-20 166.6 14.2 184 498-692 29-219 (285)
71 2z66_A Variable lymphocyte rec 99.6 8.1E-16 2.8E-20 171.9 10.9 143 540-689 42-190 (306)
72 1wwl_A Monocyte differentiatio 99.6 1.3E-15 4.4E-20 170.3 9.1 127 521-655 41-185 (312)
73 1h6u_A Internalin H; cell adhe 99.6 3E-14 1E-18 158.6 16.6 191 499-708 39-229 (308)
74 1p9a_G Platelet glycoprotein I 99.6 3.6E-14 1.2E-18 156.2 16.8 192 500-704 9-203 (290)
75 2o6q_A Variable lymphocyte rec 99.6 4.4E-14 1.5E-18 154.2 17.0 191 503-705 18-214 (270)
76 3o53_A Protein LRIM1, AGAP0063 99.6 2.2E-15 7.4E-20 168.9 6.7 223 542-805 50-274 (317)
77 2o6q_A Variable lymphocyte rec 99.6 4.7E-14 1.6E-18 154.1 17.2 180 498-688 34-219 (270)
78 3rfs_A Internalin B, repeat mo 99.5 5E-14 1.7E-18 153.9 16.8 137 546-691 37-174 (272)
79 1p9a_G Platelet glycoprotein I 99.5 2.9E-14 1E-18 156.9 14.8 199 521-779 8-207 (290)
80 3oja_A Leucine-rich immune mol 99.5 3E-14 1E-18 169.2 14.9 126 548-688 32-158 (487)
81 3rfs_A Internalin B, repeat mo 99.5 7.4E-14 2.5E-18 152.5 16.6 176 499-687 39-218 (272)
82 2xwt_C Thyrotropin receptor; s 99.5 5.2E-14 1.8E-18 150.7 14.5 193 499-703 29-233 (239)
83 2z62_A TOLL-like receptor 4, v 99.5 8E-14 2.7E-18 152.9 15.4 183 542-779 44-236 (276)
84 1h6u_A Internalin H; cell adhe 99.5 9.5E-14 3.3E-18 154.5 16.0 171 546-779 59-229 (308)
85 3m19_A Variable lymphocyte rec 99.5 1.5E-13 5.3E-18 148.1 16.6 175 503-689 16-194 (251)
86 3oja_A Leucine-rich immune mol 99.5 9.5E-15 3.2E-19 173.5 7.6 197 545-780 53-250 (487)
87 1wwl_A Monocyte differentiatio 99.5 4.4E-14 1.5E-18 157.8 11.5 137 547-691 118-270 (312)
88 4ay9_X Follicle-stimulating ho 99.5 1.5E-13 5.1E-18 156.2 15.9 239 553-915 12-255 (350)
89 2z62_A TOLL-like receptor 4, v 99.5 7.5E-14 2.6E-18 153.2 12.8 196 498-705 25-233 (276)
90 2xwt_C Thyrotropin receptor; s 99.5 6.3E-14 2.2E-18 150.0 11.6 115 540-655 45-168 (239)
91 1h6t_A Internalin B; cell adhe 99.5 1.4E-13 4.8E-18 151.6 13.5 173 499-690 44-216 (291)
92 3m19_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 141.2 17.2 129 552-690 16-147 (251)
93 4ezg_A Putative uncharacterize 99.4 8.4E-13 2.9E-17 136.3 14.6 148 547-704 41-189 (197)
94 2ast_B S-phase kinase-associat 99.4 1.2E-13 4.1E-18 156.7 8.6 224 552-856 49-282 (336)
95 1h6t_A Internalin B; cell adhe 99.4 5.2E-13 1.8E-17 147.1 12.4 174 516-708 39-212 (291)
96 2qen_A Walker-type ATPase; unk 99.4 1.2E-11 4.1E-16 141.0 23.5 284 150-471 8-349 (350)
97 1m9s_A Internalin B; cell inva 99.4 5.5E-13 1.9E-17 161.2 12.9 174 499-691 41-214 (605)
98 4ay9_X Follicle-stimulating ho 99.4 1.1E-12 3.6E-17 149.2 14.2 146 537-692 20-172 (350)
99 1w5s_A Origin recognition comp 99.4 4.8E-12 1.6E-16 147.9 19.7 279 154-452 22-371 (412)
100 4glp_A Monocyte differentiatio 99.4 9.1E-14 3.1E-18 155.2 4.5 78 551-628 92-179 (310)
101 2fna_A Conserved hypothetical 99.4 7E-12 2.4E-16 143.4 20.4 282 151-470 10-356 (357)
102 2ast_B S-phase kinase-associat 99.4 1.9E-13 6.5E-18 155.0 6.3 102 573-684 47-152 (336)
103 4ezg_A Putative uncharacterize 99.4 2.7E-12 9.3E-17 132.4 14.1 130 546-687 62-194 (197)
104 2ell_A Acidic leucine-rich nuc 99.4 1.9E-12 6.5E-17 129.9 11.0 136 549-692 23-165 (168)
105 1xeu_A Internalin C; cellular 99.4 6E-12 2E-16 136.2 15.7 147 546-707 37-183 (263)
106 2v9t_B SLIT homolog 2 protein 99.4 4.3E-12 1.5E-16 133.3 13.7 130 550-687 32-165 (220)
107 1m9s_A Internalin B; cell inva 99.3 2E-12 6.9E-17 156.3 12.2 177 512-707 32-208 (605)
108 2v9t_B SLIT homolog 2 protein 99.3 5.9E-12 2E-16 132.1 14.3 142 553-704 14-160 (220)
109 1xeu_A Internalin C; cellular 99.3 1.2E-12 4.2E-17 141.6 9.1 167 505-691 23-189 (263)
110 3e6j_A Variable lymphocyte rec 99.3 5.5E-12 1.9E-16 133.4 13.4 130 550-688 40-173 (229)
111 3qfl_A MLA10; coiled-coil, (CC 99.3 3.3E-13 1.1E-17 122.6 2.9 78 9-95 3-81 (115)
112 2ca6_A RAN GTPase-activating p 99.3 6.4E-13 2.2E-17 153.6 5.5 265 551-890 10-314 (386)
113 4glp_A Monocyte differentiatio 99.3 2.5E-12 8.5E-17 143.5 10.0 190 502-703 92-301 (310)
114 2ca6_A RAN GTPase-activating p 99.3 3.6E-13 1.2E-17 155.7 3.3 140 544-687 26-200 (386)
115 2o6s_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 129.0 14.0 104 551-655 29-136 (208)
116 3e6j_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 129.7 14.6 141 552-703 21-166 (229)
117 2v70_A SLIT-2, SLIT homolog 2 99.3 1.5E-11 5.2E-16 129.0 13.6 129 551-687 33-166 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 1.2E-11 4.1E-16 129.8 12.6 147 504-655 14-165 (220)
119 3cvr_A Invasion plasmid antige 99.3 1.2E-11 4.1E-16 147.6 13.6 165 550-782 80-245 (571)
120 2o6s_A Variable lymphocyte rec 99.3 3.6E-11 1.2E-15 125.3 14.5 164 505-687 11-178 (208)
121 2je0_A Acidic leucine-rich nuc 99.3 7.2E-12 2.5E-16 122.7 8.3 127 548-682 15-148 (149)
122 1w8a_A SLIT protein; signaling 99.3 2.2E-11 7.5E-16 124.8 11.9 125 553-687 11-139 (192)
123 3goz_A Leucine-rich repeat-con 99.2 1.6E-12 5.5E-17 148.5 3.4 142 543-688 15-181 (362)
124 2xot_A Amphoterin-induced prot 99.2 6.3E-11 2.1E-15 135.1 15.5 130 553-692 21-154 (361)
125 2xot_A Amphoterin-induced prot 99.2 2.3E-11 7.8E-16 138.7 11.7 132 552-691 41-180 (361)
126 1a9n_A U2A', U2A'; complex (nu 99.2 2.1E-11 7.2E-16 123.1 9.3 132 546-687 15-153 (176)
127 2wfh_A SLIT homolog 2 protein 99.2 6.4E-11 2.2E-15 121.2 12.5 103 551-654 32-137 (193)
128 1dce_A Protein (RAB geranylger 99.2 6.5E-13 2.2E-17 159.6 -3.7 182 501-692 349-551 (567)
129 3cvr_A Invasion plasmid antige 99.2 9.8E-11 3.4E-15 139.7 14.6 170 502-703 60-237 (571)
130 2wfh_A SLIT homolog 2 protein 99.2 1.2E-10 4.1E-15 119.1 12.5 125 553-687 13-139 (193)
131 4b8c_D Glucose-repressible alc 99.2 3.6E-11 1.2E-15 149.4 9.6 154 501-656 173-329 (727)
132 2qby_B CDC6 homolog 3, cell di 99.1 2.1E-09 7.1E-14 124.1 22.6 277 154-452 20-339 (384)
133 3goz_A Leucine-rich repeat-con 99.1 1.4E-11 4.7E-16 140.8 3.4 126 554-687 2-151 (362)
134 2ell_A Acidic leucine-rich nuc 99.1 1.2E-10 4.2E-15 116.5 9.9 109 546-656 45-160 (168)
135 1njg_A DNA polymerase III subu 99.1 9.4E-10 3.2E-14 118.3 17.6 189 152-349 21-232 (250)
136 2o6r_A Variable lymphocyte rec 99.1 5E-10 1.7E-14 113.1 14.0 127 552-688 9-138 (177)
137 1w8a_A SLIT protein; signaling 99.1 2.7E-10 9.1E-15 116.6 11.7 104 551-655 30-138 (192)
138 1a9n_A U2A', U2A'; complex (nu 99.1 3.7E-11 1.3E-15 121.3 4.0 105 549-655 41-152 (176)
139 2chg_A Replication factor C sm 99.1 1.7E-09 5.7E-14 114.3 16.2 191 151-348 14-207 (226)
140 2r9u_A Variable lymphocyte rec 99.0 7.3E-10 2.5E-14 111.1 11.5 100 553-655 15-117 (174)
141 2je0_A Acidic leucine-rich nuc 99.0 1.6E-10 5.6E-15 112.9 6.5 104 546-651 38-148 (149)
142 1dce_A Protein (RAB geranylger 99.0 4E-10 1.4E-14 135.4 11.1 123 551-681 442-567 (567)
143 3g39_A Variable lymphocyte rec 99.0 7.9E-10 2.7E-14 110.5 11.4 101 552-655 11-114 (170)
144 1fnn_A CDC6P, cell division co 99.0 1.9E-08 6.6E-13 116.1 24.7 299 154-475 17-385 (389)
145 2o6r_A Variable lymphocyte rec 99.0 1.8E-09 6E-14 109.1 12.8 105 550-655 28-136 (177)
146 2qby_A CDC6 homolog 1, cell di 99.0 2.9E-09 9.8E-14 123.1 16.0 191 153-343 19-243 (386)
147 4b8c_D Glucose-repressible alc 98.9 7E-10 2.4E-14 137.8 8.0 125 556-690 207-332 (727)
148 2v1u_A Cell division control p 98.9 1E-08 3.6E-13 118.4 16.6 275 154-452 19-351 (387)
149 1ds9_A Outer arm dynein; leuci 98.9 2.4E-11 8.3E-16 125.3 -5.3 133 545-680 43-180 (198)
150 1sxj_B Activator 1 37 kDa subu 98.8 1.3E-08 4.6E-13 114.1 13.1 191 151-347 18-212 (323)
151 2r9u_A Variable lymphocyte rec 98.8 2.4E-08 8.1E-13 99.9 11.6 107 575-691 14-122 (174)
152 3g39_A Variable lymphocyte rec 98.8 2.6E-08 8.9E-13 99.3 11.6 107 574-690 10-118 (170)
153 1hqc_A RUVB; extended AAA-ATPa 98.8 3.5E-08 1.2E-12 110.6 13.1 179 152-349 10-215 (324)
154 1ds9_A Outer arm dynein; leuci 98.7 3.4E-10 1.2E-14 116.7 -4.8 127 552-687 25-153 (198)
155 1iqp_A RFCS; clamp loader, ext 98.7 7.2E-08 2.5E-12 108.3 13.2 191 152-349 23-216 (327)
156 3sb4_A Hypothetical leucine ri 98.7 3.3E-08 1.1E-12 111.0 9.5 285 549-912 24-327 (329)
157 2ifg_A High affinity nerve gro 98.6 7.3E-08 2.5E-12 109.2 9.9 99 554-655 12-115 (347)
158 4fdw_A Leucine rich hypothetic 98.5 3.2E-06 1.1E-10 96.6 21.0 107 540-652 126-235 (401)
159 2chq_A Replication factor C sm 98.5 7E-07 2.4E-11 99.7 14.4 186 152-348 15-207 (319)
160 3sb4_A Hypothetical leucine ri 98.5 1.8E-07 6.2E-12 104.8 9.5 158 522-693 100-316 (329)
161 1jr3_A DNA polymerase III subu 98.4 1.5E-06 5.3E-11 99.3 15.4 186 152-346 14-222 (373)
162 1jbk_A CLPB protein; beta barr 98.4 3E-07 1E-11 94.2 7.8 147 152-310 20-194 (195)
163 3te6_A Regulatory protein SIR3 98.4 4.3E-06 1.5E-10 90.7 16.1 159 155-315 21-212 (318)
164 2ifg_A High affinity nerve gro 98.3 1.6E-06 5.4E-11 98.1 11.4 103 576-688 11-117 (347)
165 1sxj_D Activator 1 41 kDa subu 98.2 2.9E-06 9.8E-11 96.2 11.0 193 151-344 34-234 (353)
166 3pvs_A Replication-associated 98.2 8.6E-06 2.9E-10 93.9 13.4 179 151-346 23-216 (447)
167 3un9_A NLR family member X1; l 98.2 1.7E-07 5.7E-12 106.3 -1.6 136 549-688 100-253 (372)
168 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5.1E-11 84.8 5.2 89 1042-1138 62-154 (176)
169 4fs7_A Uncharacterized protein 98.1 1.6E-05 5.3E-10 91.5 14.4 130 1029-1178 264-393 (394)
170 3bos_A Putative DNA replicatio 98.1 3.4E-06 1.2E-10 89.8 8.2 176 152-346 26-218 (242)
171 3h4m_A Proteasome-activating n 98.1 2E-05 7E-10 86.0 14.2 176 150-343 13-229 (285)
172 2qz4_A Paraplegin; AAA+, SPG7, 98.1 7.3E-05 2.5E-09 80.4 17.9 177 152-344 4-221 (262)
173 1sxj_A Activator 1 95 kDa subu 98.1 1.3E-05 4.4E-10 95.1 13.0 186 150-347 35-255 (516)
174 3un9_A NLR family member X1; l 98.1 6.5E-07 2.2E-11 101.4 1.2 134 549-687 71-224 (372)
175 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.8E-11 85.0 3.3 91 1064-1164 60-154 (176)
176 4fdw_A Leucine rich hypothetic 98.1 9.5E-06 3.2E-10 92.8 10.6 132 540-685 148-282 (401)
177 1d2n_A N-ethylmaleimide-sensit 98.1 6.5E-05 2.2E-09 81.2 16.6 189 154-365 33-262 (272)
178 1sxj_E Activator 1 40 kDa subu 98.1 1.4E-05 5E-10 90.4 11.9 195 152-346 12-238 (354)
179 3u61_B DNA polymerase accessor 98.0 3.7E-05 1.3E-09 85.7 13.2 180 151-343 23-214 (324)
180 4fs7_A Uncharacterized protein 98.0 0.00029 9.8E-09 80.8 20.9 58 843-914 294-351 (394)
181 1a5t_A Delta prime, HOLB; zinc 98.0 8.5E-05 2.9E-09 82.8 15.7 171 158-343 6-203 (334)
182 3pfi_A Holliday junction ATP-d 97.9 6.2E-05 2.1E-09 84.4 14.4 174 152-345 27-227 (338)
183 3d8b_A Fidgetin-like protein 1 97.9 0.00021 7.2E-09 80.3 17.9 178 152-346 82-296 (357)
184 1sxj_C Activator 1 40 kDa subu 97.9 9.1E-05 3.1E-09 83.0 14.0 181 151-339 22-206 (340)
185 2z4s_A Chromosomal replication 97.8 5.8E-05 2E-09 87.2 11.7 181 152-343 103-304 (440)
186 3syl_A Protein CBBX; photosynt 97.8 8.1E-05 2.8E-09 82.3 12.5 147 155-315 32-218 (309)
187 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.0006 2.1E-08 75.2 19.2 180 151-346 9-224 (322)
188 3eie_A Vacuolar protein sortin 97.8 0.00036 1.2E-08 77.2 17.4 180 149-345 13-228 (322)
189 3vfd_A Spastin; ATPase, microt 97.8 0.00055 1.9E-08 78.1 19.2 178 150-344 111-325 (389)
190 2p65_A Hypothetical protein PF 97.8 3.8E-05 1.3E-09 77.7 7.9 49 152-200 20-68 (187)
191 3uk6_A RUVB-like 2; hexameric 97.8 0.00014 4.8E-09 82.7 13.3 49 153-201 43-96 (368)
192 2qp9_X Vacuolar protein sortin 97.7 0.00049 1.7E-08 77.1 15.8 177 152-345 49-261 (355)
193 2zan_A Vacuolar protein sortin 97.7 0.001 3.5E-08 76.9 18.5 178 150-345 130-345 (444)
194 3b9p_A CG5977-PA, isoform A; A 97.7 0.0011 3.8E-08 72.5 18.1 178 151-345 18-233 (297)
195 2gno_A DNA polymerase III, gam 97.6 0.00025 8.7E-09 77.1 11.3 146 158-314 1-152 (305)
196 3cf0_A Transitional endoplasmi 97.6 0.00028 9.5E-09 77.3 11.7 173 150-340 11-223 (301)
197 2ra8_A Uncharacterized protein 97.6 3.7E-05 1.3E-09 86.1 4.7 138 544-687 166-320 (362)
198 2ra8_A Uncharacterized protein 97.5 8.6E-05 2.9E-09 83.1 6.1 79 547-626 136-227 (362)
199 1qvr_A CLPB protein; coiled co 97.5 0.00038 1.3E-08 88.1 12.6 152 151-314 167-345 (854)
200 4b4t_J 26S protease regulatory 97.5 0.0011 3.7E-08 73.7 14.6 172 149-338 143-354 (405)
201 3pxg_A Negative regulator of g 97.5 0.0003 1E-08 82.1 10.7 149 152-315 178-339 (468)
202 3ec2_A DNA replication protein 97.5 4.4E-05 1.5E-09 76.7 3.1 116 159-282 19-142 (180)
203 1io0_A Tropomodulin; LRR prote 97.5 2.5E-05 8.5E-10 78.7 1.1 110 544-655 30-163 (185)
204 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0012 4.2E-08 82.5 16.4 151 151-314 183-362 (758)
205 3n70_A Transport activator; si 97.4 6.9E-05 2.3E-09 72.0 3.8 110 155-282 2-115 (145)
206 4gt6_A Cell surface protein; l 97.4 0.0035 1.2E-07 71.7 17.8 108 540-651 53-168 (394)
207 4b4t_L 26S protease subunit RP 97.4 0.0023 7.8E-08 72.4 15.6 169 150-338 177-387 (437)
208 1l8q_A Chromosomal replication 97.3 0.00094 3.2E-08 74.1 12.0 167 161-339 21-202 (324)
209 3rw6_A Nuclear RNA export fact 97.3 4.7E-05 1.6E-09 80.5 1.0 79 571-650 168-258 (267)
210 4b4t_H 26S protease regulatory 97.3 0.0033 1.1E-07 70.8 15.5 170 151-338 206-415 (467)
211 4b4t_I 26S protease regulatory 97.3 0.0023 7.8E-08 71.3 13.9 170 149-338 177-388 (437)
212 3pxi_A Negative regulator of g 97.3 0.0014 4.8E-08 81.8 13.8 149 152-315 178-339 (758)
213 1lv7_A FTSH; alpha/beta domain 97.2 0.0021 7.2E-08 68.5 13.0 174 151-342 9-222 (257)
214 3rw6_A Nuclear RNA export fact 97.2 6.7E-05 2.3E-09 79.3 1.1 78 547-624 167-257 (267)
215 4b4t_M 26S protease regulatory 97.2 0.0013 4.5E-08 74.3 11.6 170 149-338 176-387 (434)
216 2w58_A DNAI, primosome compone 97.2 0.00014 4.6E-09 74.6 2.6 111 162-282 37-158 (202)
217 4gt6_A Cell surface protein; l 97.2 0.0083 2.8E-07 68.5 17.9 150 519-685 59-216 (394)
218 1io0_A Tropomodulin; LRR prote 97.1 0.00013 4.5E-09 73.3 1.5 117 566-687 29-164 (185)
219 1in4_A RUVB, holliday junction 97.0 0.011 3.7E-07 65.6 16.9 174 151-344 22-222 (334)
220 3co5_A Putative two-component 97.0 0.0001 3.5E-09 70.5 -0.2 46 154-199 4-51 (143)
221 2ce7_A Cell division protein F 96.9 0.011 3.9E-07 67.9 15.8 169 152-338 14-221 (476)
222 4fcw_A Chaperone protein CLPB; 96.8 0.0016 5.5E-08 71.8 8.0 59 155-215 18-85 (311)
223 4b4t_K 26S protease regulatory 96.8 0.0073 2.5E-07 68.2 13.2 169 150-338 168-379 (428)
224 1ofh_A ATP-dependent HSL prote 96.8 0.0056 1.9E-07 67.4 11.8 149 154-313 15-214 (310)
225 3hu3_A Transitional endoplasmi 96.7 0.013 4.3E-07 68.2 14.7 175 152-344 202-414 (489)
226 2r62_A Cell division protease 96.7 0.0019 6.4E-08 69.4 7.2 49 152-200 9-69 (268)
227 2bjv_A PSP operon transcriptio 96.6 0.0014 4.9E-08 70.2 5.3 48 153-200 5-54 (265)
228 1ojl_A Transcriptional regulat 96.5 0.0053 1.8E-07 66.9 9.0 45 155-199 3-49 (304)
229 2kjq_A DNAA-related protein; s 96.5 0.0018 6E-08 62.1 4.4 40 174-215 35-74 (149)
230 1ixz_A ATP-dependent metallopr 96.5 0.043 1.5E-06 58.0 15.6 170 151-338 13-221 (254)
231 2x8a_A Nuclear valosin-contain 96.3 0.043 1.5E-06 58.6 14.3 148 152-315 8-192 (274)
232 3m6a_A ATP-dependent protease 96.2 0.011 3.9E-07 69.9 10.1 47 154-200 81-133 (543)
233 2r44_A Uncharacterized protein 96.2 0.0044 1.5E-07 68.9 6.2 150 154-315 27-199 (331)
234 1iy2_A ATP-dependent metallopr 96.1 0.087 3E-06 56.5 15.4 171 150-338 36-245 (278)
235 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0057 1.9E-07 65.5 5.2 64 175-256 123-193 (331)
236 3cf2_A TER ATPase, transitiona 95.9 0.037 1.3E-06 67.6 12.9 168 153-338 203-407 (806)
237 3pxi_A Negative regulator of g 95.9 0.015 5.1E-07 72.6 9.5 144 154-313 491-674 (758)
238 2dhr_A FTSH; AAA+ protein, hex 95.7 0.054 1.9E-06 62.7 12.2 173 151-338 28-236 (499)
239 2qgz_A Helicase loader, putati 95.5 0.015 5.2E-07 63.3 6.3 52 160-213 134-189 (308)
240 3t15_A Ribulose bisphosphate c 95.4 0.014 4.9E-07 63.2 5.7 27 174-200 35-61 (293)
241 1r6b_X CLPA protein; AAA+, N-t 95.3 0.056 1.9E-06 67.4 11.8 46 154-199 458-512 (758)
242 1jr3_D DNA polymerase III, del 95.2 0.14 4.9E-06 56.8 13.5 158 173-344 16-184 (343)
243 2c9o_A RUVB-like 1; hexameric 95.0 0.018 6.2E-07 66.8 5.5 48 153-200 36-88 (456)
244 1ypw_A Transitional endoplasmi 94.6 0.074 2.5E-06 66.1 9.9 148 152-315 202-386 (806)
245 3ice_A Transcription terminati 94.5 0.086 2.9E-06 57.6 8.8 53 164-217 162-216 (422)
246 1rz3_A Hypothetical protein rb 94.5 0.032 1.1E-06 56.5 5.3 43 158-200 2-47 (201)
247 1u0j_A DNA replication protein 94.5 0.11 3.7E-06 54.2 9.2 37 163-199 90-128 (267)
248 3hr8_A Protein RECA; alpha and 94.3 0.086 2.9E-06 58.0 8.3 52 175-233 61-112 (356)
249 3fwy_A Light-independent proto 94.2 0.039 1.3E-06 59.9 5.3 29 173-201 46-74 (314)
250 3c8u_A Fructokinase; YP_612366 94.1 0.051 1.8E-06 55.4 5.8 40 161-200 6-47 (208)
251 1qvr_A CLPB protein; coiled co 94.1 0.042 1.4E-06 69.3 6.1 47 154-200 558-613 (854)
252 3rfe_A Platelet glycoprotein I 93.7 0.087 3E-06 48.7 6.0 54 599-655 12-67 (130)
253 3io5_A Recombination and repai 93.6 0.16 5.6E-06 54.0 8.5 53 177-234 30-82 (333)
254 1qhx_A CPT, protein (chloramph 93.4 0.043 1.5E-06 54.3 3.6 25 176-200 4-28 (178)
255 3kb2_A SPBC2 prophage-derived 93.4 0.044 1.5E-06 53.9 3.5 25 176-200 2-26 (173)
256 2ga8_A Hypothetical 39.9 kDa p 93.3 0.08 2.7E-06 57.6 5.8 44 158-201 3-50 (359)
257 4akg_A Glutathione S-transfera 93.3 0.46 1.6E-05 66.0 14.3 76 176-255 1268-1346(2695)
258 3vaa_A Shikimate kinase, SK; s 93.2 0.052 1.8E-06 54.9 3.9 27 174-200 24-50 (199)
259 3lw7_A Adenylate kinase relate 93.2 0.048 1.6E-06 53.8 3.6 23 176-199 2-24 (179)
260 1g8p_A Magnesium-chelatase 38 93.1 0.048 1.6E-06 60.9 3.9 50 151-200 21-70 (350)
261 2hf9_A Probable hydrogenase ni 93.0 0.07 2.4E-06 55.2 4.7 38 163-200 26-63 (226)
262 2ck3_D ATP synthase subunit be 93.0 0.4 1.4E-05 54.1 10.8 63 166-229 143-207 (482)
263 2zr9_A Protein RECA, recombina 92.9 0.17 5.7E-06 56.0 7.6 53 174-233 60-112 (349)
264 1zp6_A Hypothetical protein AT 92.9 0.059 2E-06 54.0 3.8 25 174-198 8-32 (191)
265 3trf_A Shikimate kinase, SK; a 92.9 0.059 2E-06 53.7 3.7 26 175-200 5-30 (185)
266 1fx0_B ATP synthase beta chain 92.8 0.37 1.3E-05 54.6 10.3 63 166-229 155-219 (498)
267 1ly1_A Polynucleotide kinase; 92.8 0.061 2.1E-06 53.3 3.7 22 176-197 3-24 (181)
268 4h09_A Hypothetical leucine ri 92.7 0.53 1.8E-05 52.9 11.9 102 546-651 213-318 (379)
269 4h09_A Hypothetical leucine ri 92.7 0.33 1.1E-05 54.7 10.0 110 539-652 229-342 (379)
270 4eun_A Thermoresistant glucoki 92.6 0.071 2.4E-06 53.9 3.9 27 173-199 27-53 (200)
271 1kag_A SKI, shikimate kinase I 92.6 0.059 2E-06 53.0 3.1 25 176-200 5-29 (173)
272 1kgd_A CASK, peripheral plasma 92.6 0.069 2.4E-06 52.9 3.6 26 175-200 5-30 (180)
273 2orw_A Thymidine kinase; TMTK, 92.6 0.034 1.2E-06 55.2 1.4 26 176-201 4-29 (184)
274 1nks_A Adenylate kinase; therm 92.5 0.074 2.5E-06 53.4 3.9 25 176-200 2-26 (194)
275 2wsm_A Hydrogenase expression/ 92.5 0.078 2.7E-06 54.6 4.2 41 160-200 15-55 (221)
276 3uie_A Adenylyl-sulfate kinase 92.5 0.08 2.7E-06 53.5 4.2 29 172-200 22-50 (200)
277 1odf_A YGR205W, hypothetical 3 92.5 0.14 4.9E-06 54.8 6.2 54 173-226 29-83 (290)
278 2rhm_A Putative kinase; P-loop 92.4 0.083 2.8E-06 53.0 4.1 26 175-200 5-30 (193)
279 2px0_A Flagellar biosynthesis 92.4 0.15 5.3E-06 54.7 6.4 28 174-201 104-131 (296)
280 1sky_E F1-ATPase, F1-ATP synth 92.4 0.19 6.4E-06 56.9 7.2 50 176-226 152-202 (473)
281 3hws_A ATP-dependent CLP prote 92.3 0.12 4.2E-06 57.8 5.8 46 155-200 16-76 (363)
282 3l0o_A Transcription terminati 92.3 0.032 1.1E-06 60.8 0.8 52 164-216 163-216 (427)
283 3rfe_A Platelet glycoprotein I 92.3 0.17 5.7E-06 46.8 5.7 51 554-606 12-66 (130)
284 1u94_A RECA protein, recombina 92.3 0.2 7E-06 55.3 7.3 45 174-220 62-106 (356)
285 1kht_A Adenylate kinase; phosp 92.3 0.08 2.7E-06 53.0 3.8 25 176-200 4-28 (192)
286 3t61_A Gluconokinase; PSI-biol 92.2 0.064 2.2E-06 54.3 3.0 26 175-200 18-43 (202)
287 2yvu_A Probable adenylyl-sulfa 92.2 0.11 3.6E-06 51.9 4.5 29 173-201 11-39 (186)
288 3iij_A Coilin-interacting nucl 92.1 0.075 2.6E-06 52.6 3.3 26 175-200 11-36 (180)
289 1zuh_A Shikimate kinase; alpha 92.1 0.089 3E-06 51.4 3.8 27 174-200 6-32 (168)
290 1xjc_A MOBB protein homolog; s 92.1 0.094 3.2E-06 50.7 3.8 28 174-201 3-30 (169)
291 1xp8_A RECA protein, recombina 92.1 0.26 9.1E-06 54.5 8.0 44 175-220 74-117 (366)
292 3nbx_X ATPase RAVA; AAA+ ATPas 92.1 0.067 2.3E-06 62.0 3.2 45 154-200 22-66 (500)
293 3umf_A Adenylate kinase; rossm 92.0 0.1 3.5E-06 53.0 4.2 28 173-200 27-54 (217)
294 1via_A Shikimate kinase; struc 92.0 0.077 2.6E-06 52.3 3.2 25 176-200 5-29 (175)
295 1knq_A Gluconate kinase; ALFA/ 92.0 0.093 3.2E-06 51.6 3.8 25 175-199 8-32 (175)
296 2ze6_A Isopentenyl transferase 92.0 0.091 3.1E-06 55.3 3.9 25 176-200 2-26 (253)
297 3dm5_A SRP54, signal recogniti 91.9 0.29 1E-05 55.2 8.1 28 174-201 99-126 (443)
298 2qor_A Guanylate kinase; phosp 91.9 0.083 2.8E-06 53.6 3.4 27 174-200 11-37 (204)
299 1y63_A LMAJ004144AAA protein; 91.9 0.098 3.4E-06 52.0 3.9 25 174-198 9-33 (184)
300 1um8_A ATP-dependent CLP prote 91.9 0.15 5.1E-06 57.4 5.9 46 155-200 22-97 (376)
301 2c95_A Adenylate kinase 1; tra 91.9 0.1 3.4E-06 52.5 4.0 27 174-200 8-34 (196)
302 2jaq_A Deoxyguanosine kinase; 91.9 0.092 3.2E-06 53.2 3.7 24 177-200 2-25 (205)
303 3tau_A Guanylate kinase, GMP k 91.8 0.097 3.3E-06 53.2 3.8 28 173-200 6-33 (208)
304 3vr4_A V-type sodium ATPase ca 91.7 0.31 1.1E-05 55.9 8.0 47 166-216 222-269 (600)
305 2cvh_A DNA repair and recombin 91.7 0.18 6E-06 51.8 5.8 45 174-223 19-63 (220)
306 1tev_A UMP-CMP kinase; ploop, 91.7 0.11 3.6E-06 52.3 4.0 26 175-200 3-28 (196)
307 1n0w_A DNA repair protein RAD5 91.7 0.31 1E-05 50.9 7.7 56 175-231 24-83 (243)
308 3mfy_A V-type ATP synthase alp 91.7 0.22 7.5E-06 56.9 6.7 56 166-225 217-274 (588)
309 2bdt_A BH3686; alpha-beta prot 91.7 0.099 3.4E-06 52.2 3.6 22 176-197 3-24 (189)
310 3tr0_A Guanylate kinase, GMP k 91.6 0.11 3.6E-06 52.8 3.8 25 175-199 7-31 (205)
311 1gvn_B Zeta; postsegregational 91.6 0.16 5.4E-06 54.5 5.3 26 174-199 32-57 (287)
312 1ukz_A Uridylate kinase; trans 91.6 0.12 4.1E-06 52.3 4.2 28 173-200 13-40 (203)
313 2iyv_A Shikimate kinase, SK; t 91.6 0.084 2.9E-06 52.5 2.9 25 176-200 3-27 (184)
314 1uf9_A TT1252 protein; P-loop, 91.5 0.11 3.9E-06 52.4 4.0 26 173-198 6-31 (203)
315 3cm0_A Adenylate kinase; ATP-b 91.5 0.13 4.3E-06 51.3 4.1 26 175-200 4-29 (186)
316 1ye8_A Protein THEP1, hypothet 91.4 0.12 4.2E-06 50.8 3.9 24 177-200 2-25 (178)
317 2bwj_A Adenylate kinase 5; pho 91.4 0.11 3.9E-06 52.3 3.8 26 175-200 12-37 (199)
318 2plr_A DTMP kinase, probable t 91.4 0.13 4.3E-06 52.6 4.2 27 175-201 4-30 (213)
319 1uj2_A Uridine-cytidine kinase 91.3 0.12 4.2E-06 54.4 4.0 28 173-200 20-47 (252)
320 3tlx_A Adenylate kinase 2; str 91.3 0.2 7E-06 52.2 5.7 28 173-200 27-54 (243)
321 1e6c_A Shikimate kinase; phosp 91.3 0.1 3.5E-06 51.2 3.2 25 176-200 3-27 (173)
322 2j41_A Guanylate kinase; GMP, 91.3 0.12 4E-06 52.5 3.8 25 175-199 6-30 (207)
323 2if2_A Dephospho-COA kinase; a 91.3 0.11 3.7E-06 52.7 3.4 22 176-197 2-23 (204)
324 3ney_A 55 kDa erythrocyte memb 91.3 0.13 4.3E-06 51.3 3.8 27 174-200 18-44 (197)
325 1ex7_A Guanylate kinase; subst 91.3 0.1 3.4E-06 51.6 3.1 25 176-200 2-26 (186)
326 3a00_A Guanylate kinase, GMP k 91.3 0.091 3.1E-06 52.3 2.8 25 176-200 2-26 (186)
327 3a4m_A L-seryl-tRNA(SEC) kinas 91.2 0.13 4.3E-06 54.5 4.0 26 175-200 4-29 (260)
328 2cdn_A Adenylate kinase; phosp 91.1 0.14 4.8E-06 51.7 4.2 26 175-200 20-45 (201)
329 1cke_A CK, MSSA, protein (cyti 91.1 0.12 4.1E-06 53.4 3.7 25 176-200 6-30 (227)
330 3asz_A Uridine kinase; cytidin 91.1 0.14 4.8E-06 52.2 4.2 27 174-200 5-31 (211)
331 2bbw_A Adenylate kinase 4, AK4 91.1 0.13 4.4E-06 54.0 3.9 27 174-200 26-52 (246)
332 2vli_A Antibiotic resistance p 91.1 0.094 3.2E-06 52.0 2.7 26 175-200 5-30 (183)
333 1qf9_A UMP/CMP kinase, protein 91.0 0.13 4.6E-06 51.4 3.8 26 175-200 6-31 (194)
334 1tue_A Replication protein E1; 91.0 0.17 5.7E-06 50.2 4.3 38 163-200 45-83 (212)
335 4gp7_A Metallophosphoesterase; 91.0 0.11 3.6E-06 51.0 2.9 23 174-196 8-30 (171)
336 2pt5_A Shikimate kinase, SK; a 90.9 0.14 4.8E-06 49.9 3.8 24 177-200 2-25 (168)
337 1aky_A Adenylate kinase; ATP:A 90.9 0.14 4.7E-06 52.7 3.9 26 175-200 4-29 (220)
338 3tqc_A Pantothenate kinase; bi 90.9 0.17 5.9E-06 54.8 4.7 27 174-200 91-117 (321)
339 2qt1_A Nicotinamide riboside k 90.8 0.14 4.7E-06 52.1 3.7 25 174-198 20-44 (207)
340 1lvg_A Guanylate kinase, GMP k 90.7 0.11 3.8E-06 52.3 2.9 26 175-200 4-29 (198)
341 2wwf_A Thymidilate kinase, put 90.7 0.15 5.1E-06 52.0 3.9 32 175-207 10-41 (212)
342 1nn5_A Similar to deoxythymidy 90.6 0.16 5.4E-06 51.9 4.0 33 174-207 8-40 (215)
343 3jvv_A Twitching mobility prot 90.6 0.34 1.2E-05 53.5 6.9 96 174-286 122-234 (356)
344 2grj_A Dephospho-COA kinase; T 90.6 0.15 5E-06 50.9 3.6 26 174-199 11-36 (192)
345 3vr4_D V-type sodium ATPase su 90.6 0.27 9.2E-06 55.2 5.9 61 166-228 141-207 (465)
346 2pbr_A DTMP kinase, thymidylat 90.5 0.15 5.2E-06 51.0 3.7 24 177-200 2-25 (195)
347 1jjv_A Dephospho-COA kinase; P 90.5 0.14 4.8E-06 51.9 3.4 22 176-197 3-24 (206)
348 2p5t_B PEZT; postsegregational 90.4 0.19 6.6E-06 52.8 4.5 27 174-200 31-57 (253)
349 3kl4_A SRP54, signal recogniti 90.4 0.76 2.6E-05 51.9 9.6 29 174-202 96-124 (433)
350 1zd8_A GTP:AMP phosphotransfer 90.3 0.16 5.4E-06 52.5 3.7 26 175-200 7-32 (227)
351 1rj9_A FTSY, signal recognitio 90.3 0.18 6.1E-06 54.4 4.2 28 174-201 101-128 (304)
352 1pgv_A TMD-1, tropomodulin TMD 90.2 0.17 5.9E-06 50.1 3.6 83 546-628 37-136 (197)
353 3aez_A Pantothenate kinase; tr 90.2 0.17 5.9E-06 54.8 4.0 28 173-200 88-115 (312)
354 1zak_A Adenylate kinase; ATP:A 90.2 0.15 5.1E-06 52.5 3.4 26 175-200 5-30 (222)
355 1htw_A HI0065; nucleotide-bind 90.1 0.19 6.6E-06 48.2 3.8 27 173-199 31-57 (158)
356 4e22_A Cytidylate kinase; P-lo 90.1 0.18 6.2E-06 53.0 4.0 27 174-200 26-52 (252)
357 3fb4_A Adenylate kinase; psych 90.0 0.17 5.9E-06 51.7 3.7 24 177-200 2-25 (216)
358 1gtv_A TMK, thymidylate kinase 90.0 0.1 3.6E-06 53.3 1.9 26 176-201 1-26 (214)
359 3e70_C DPA, signal recognition 90.0 0.33 1.1E-05 52.9 5.9 29 173-201 127-155 (328)
360 1m7g_A Adenylylsulfate kinase; 89.9 0.2 7E-06 50.9 4.1 28 173-200 23-50 (211)
361 1g41_A Heat shock protein HSLU 89.9 0.18 6.3E-06 57.0 4.0 48 154-201 15-76 (444)
362 2jeo_A Uridine-cytidine kinase 89.9 0.19 6.5E-06 52.6 3.9 27 173-199 23-49 (245)
363 1znw_A Guanylate kinase, GMP k 89.9 0.18 6.1E-06 51.2 3.6 27 174-200 19-45 (207)
364 2j37_W Signal recognition part 89.9 0.55 1.9E-05 54.3 8.0 28 174-201 100-127 (504)
365 3end_A Light-independent proto 89.8 0.39 1.3E-05 52.2 6.5 45 172-218 38-82 (307)
366 2z0h_A DTMP kinase, thymidylat 89.8 0.18 6.3E-06 50.6 3.6 24 177-200 2-25 (197)
367 3p32_A Probable GTPase RV1496/ 89.7 0.39 1.3E-05 53.4 6.5 38 163-200 65-104 (355)
368 2i1q_A DNA repair and recombin 89.7 0.59 2E-05 51.1 8.0 58 174-232 97-168 (322)
369 2z43_A DNA repair and recombin 89.7 0.61 2.1E-05 51.0 8.0 56 175-231 107-166 (324)
370 4a74_A DNA repair and recombin 89.7 0.5 1.7E-05 48.7 7.0 44 175-218 25-72 (231)
371 1z6g_A Guanylate kinase; struc 89.7 0.16 5.4E-06 52.0 3.0 26 174-199 22-47 (218)
372 3dl0_A Adenylate kinase; phosp 89.6 0.18 6.3E-06 51.5 3.5 24 177-200 2-25 (216)
373 2v54_A DTMP kinase, thymidylat 89.6 0.19 6.7E-06 50.7 3.7 25 175-199 4-28 (204)
374 2i3b_A HCR-ntpase, human cance 89.6 0.18 6.1E-06 50.1 3.2 25 176-200 2-26 (189)
375 2f1r_A Molybdopterin-guanine d 89.5 0.18 6.3E-06 49.0 3.2 27 176-202 3-29 (171)
376 3bh0_A DNAB-like replicative h 89.5 0.66 2.3E-05 50.4 8.0 62 162-229 57-118 (315)
377 2xxa_A Signal recognition part 89.5 0.64 2.2E-05 52.8 8.1 40 174-214 99-138 (433)
378 1vma_A Cell division protein F 89.5 0.37 1.3E-05 51.9 5.9 28 174-201 103-130 (306)
379 2pez_A Bifunctional 3'-phospho 89.4 0.23 7.7E-06 49.0 3.8 26 175-200 5-30 (179)
380 1s96_A Guanylate kinase, GMP k 89.4 0.21 7.2E-06 51.0 3.7 27 174-200 15-41 (219)
381 3sr0_A Adenylate kinase; phosp 89.3 0.22 7.5E-06 50.2 3.7 24 177-200 2-25 (206)
382 1v5w_A DMC1, meiotic recombina 89.3 0.73 2.5E-05 50.8 8.2 57 174-231 121-181 (343)
383 3nwj_A ATSK2; P loop, shikimat 89.2 0.19 6.4E-06 52.5 3.2 26 175-200 48-73 (250)
384 3b9q_A Chloroplast SRP recepto 89.2 0.24 8.4E-06 53.3 4.2 28 174-201 99-126 (302)
385 1vht_A Dephospho-COA kinase; s 89.1 0.25 8.4E-06 50.6 4.0 23 175-197 4-26 (218)
386 3gqb_B V-type ATP synthase bet 89.1 0.36 1.2E-05 54.1 5.5 62 166-227 137-209 (464)
387 3lda_A DNA repair protein RAD5 89.0 0.72 2.5E-05 51.7 8.0 57 175-232 178-238 (400)
388 2f6r_A COA synthase, bifunctio 89.0 0.24 8.1E-06 53.0 3.9 24 174-197 74-97 (281)
389 3r20_A Cytidylate kinase; stru 89.0 0.25 8.4E-06 50.7 3.8 26 175-200 9-34 (233)
390 3d3q_A TRNA delta(2)-isopenten 89.0 0.24 8.1E-06 53.8 3.8 25 176-200 8-32 (340)
391 1np6_A Molybdopterin-guanine d 88.9 0.26 9E-06 48.0 3.8 26 175-200 6-31 (174)
392 3be4_A Adenylate kinase; malar 88.8 0.24 8.3E-06 50.6 3.7 25 176-200 6-30 (217)
393 1pgv_A TMD-1, tropomodulin TMD 88.8 0.16 5.4E-06 50.4 2.1 115 569-685 37-168 (197)
394 1ak2_A Adenylate kinase isoenz 88.7 0.28 9.5E-06 50.8 4.1 26 175-200 16-41 (233)
395 1e4v_A Adenylate kinase; trans 88.6 0.25 8.6E-06 50.4 3.7 24 177-200 2-25 (214)
396 2xb4_A Adenylate kinase; ATP-b 88.6 0.26 8.8E-06 50.7 3.7 24 177-200 2-25 (223)
397 3k1j_A LON protease, ATP-depen 88.6 0.24 8.1E-06 59.6 4.0 48 151-200 38-85 (604)
398 3gqb_A V-type ATP synthase alp 88.6 0.29 9.9E-06 55.9 4.3 47 166-216 211-258 (578)
399 4eaq_A DTMP kinase, thymidylat 88.6 0.46 1.6E-05 48.9 5.6 32 174-207 25-56 (229)
400 1zu4_A FTSY; GTPase, signal re 88.5 0.43 1.5E-05 51.9 5.5 29 173-201 103-131 (320)
401 3ake_A Cytidylate kinase; CMP 88.5 0.26 9.1E-06 49.9 3.7 24 177-200 4-27 (208)
402 3crm_A TRNA delta(2)-isopenten 88.4 0.28 9.4E-06 52.9 3.8 25 176-200 6-30 (323)
403 2c61_A A-type ATP synthase non 88.4 0.23 8E-06 56.0 3.4 63 166-228 142-208 (469)
404 1cr0_A DNA primase/helicase; R 88.4 0.77 2.6E-05 49.5 7.5 51 174-228 34-85 (296)
405 2ck3_A ATP synthase subunit al 88.3 0.35 1.2E-05 55.0 4.8 92 166-257 152-274 (510)
406 3oaa_A ATP synthase subunit al 88.3 0.82 2.8E-05 51.7 7.6 88 166-257 152-266 (513)
407 1sq5_A Pantothenate kinase; P- 88.1 0.3 1E-05 53.1 4.0 28 173-200 78-105 (308)
408 2og2_A Putative signal recogni 87.9 0.33 1.1E-05 53.5 4.2 28 174-201 156-183 (359)
409 1pzn_A RAD51, DNA repair and r 87.9 0.58 2E-05 51.6 6.2 47 174-220 130-180 (349)
410 3lv8_A DTMP kinase, thymidylat 87.9 0.75 2.6E-05 47.3 6.6 36 175-211 27-62 (236)
411 2qe7_A ATP synthase subunit al 87.8 0.29 9.9E-06 55.5 3.7 87 166-256 152-265 (502)
412 1yrb_A ATP(GTP)binding protein 87.8 0.36 1.2E-05 51.0 4.4 27 174-200 13-39 (262)
413 3exa_A TRNA delta(2)-isopenten 87.8 0.29 1E-05 52.1 3.5 25 175-199 3-27 (322)
414 2ehv_A Hypothetical protein PH 87.7 0.27 9.3E-06 51.6 3.3 25 174-198 29-53 (251)
415 3lnc_A Guanylate kinase, GMP k 87.6 0.2 6.7E-06 51.9 2.1 25 175-199 27-52 (231)
416 3ea0_A ATPase, para family; al 87.6 0.53 1.8E-05 49.1 5.5 28 174-201 3-31 (245)
417 2onk_A Molybdate/tungstate ABC 87.5 0.31 1.1E-05 50.5 3.5 26 173-199 23-48 (240)
418 2w0m_A SSO2452; RECA, SSPF, un 87.5 0.45 1.5E-05 49.2 4.8 38 175-214 23-60 (235)
419 1a7j_A Phosphoribulokinase; tr 87.4 0.22 7.6E-06 53.4 2.4 27 174-200 4-30 (290)
420 2r8r_A Sensor protein; KDPD, P 87.4 0.75 2.6E-05 46.5 6.0 37 177-215 8-44 (228)
421 3ld9_A DTMP kinase, thymidylat 87.4 0.74 2.5E-05 46.8 6.1 37 173-209 19-55 (223)
422 2dr3_A UPF0273 protein PH0284; 87.3 0.53 1.8E-05 49.1 5.3 39 175-215 23-61 (247)
423 4tmk_A Protein (thymidylate ki 87.3 0.94 3.2E-05 45.8 6.8 33 176-209 4-36 (213)
424 3foz_A TRNA delta(2)-isopenten 87.3 0.42 1.4E-05 50.8 4.3 26 174-199 9-34 (316)
425 1oix_A RAS-related protein RAB 87.2 0.34 1.1E-05 48.4 3.5 25 175-199 29-53 (191)
426 3a8t_A Adenylate isopentenyltr 87.1 0.27 9.4E-06 53.1 2.8 26 174-199 39-64 (339)
427 2yhs_A FTSY, cell division pro 87.0 0.4 1.4E-05 54.7 4.3 28 174-201 292-319 (503)
428 3b85_A Phosphate starvation-in 87.0 0.28 9.4E-06 49.6 2.7 24 175-198 22-45 (208)
429 2r9v_A ATP synthase subunit al 86.8 0.28 9.6E-06 55.7 2.9 87 166-256 165-278 (515)
430 3cf2_A TER ATPase, transitiona 86.8 0.56 1.9E-05 57.3 5.7 50 152-201 475-537 (806)
431 1ls1_A Signal recognition part 86.7 0.63 2.1E-05 50.0 5.5 28 174-201 97-124 (295)
432 2eyu_A Twitching motility prot 86.7 0.61 2.1E-05 49.0 5.3 28 173-200 23-50 (261)
433 1cp2_A CP2, nitrogenase iron p 86.7 0.77 2.6E-05 48.6 6.2 38 176-215 2-39 (269)
434 2pcj_A ABC transporter, lipopr 86.6 0.3 1E-05 50.1 2.8 26 174-199 29-54 (224)
435 3io3_A DEHA2D07832P; chaperone 86.6 0.8 2.8E-05 50.3 6.3 45 172-218 15-61 (348)
436 3tif_A Uncharacterized ABC tra 86.6 0.33 1.1E-05 50.2 3.0 35 174-211 30-64 (235)
437 1ltq_A Polynucleotide kinase; 86.3 0.39 1.3E-05 52.0 3.7 23 176-198 3-25 (301)
438 1q3t_A Cytidylate kinase; nucl 86.2 0.46 1.6E-05 49.3 4.0 27 174-200 15-41 (236)
439 2wji_A Ferrous iron transport 86.1 0.44 1.5E-05 46.1 3.6 23 176-198 4-26 (165)
440 2cbz_A Multidrug resistance-as 86.1 0.36 1.2E-05 50.0 3.0 26 174-199 30-55 (237)
441 2ocp_A DGK, deoxyguanosine kin 86.0 0.47 1.6E-05 49.4 4.0 26 175-200 2-27 (241)
442 2dyk_A GTP-binding protein; GT 86.0 0.46 1.6E-05 45.5 3.7 24 176-199 2-25 (161)
443 3e1s_A Exodeoxyribonuclease V, 86.0 0.9 3.1E-05 53.9 6.8 101 175-281 204-314 (574)
444 1b0u_A Histidine permease; ABC 85.9 0.37 1.3E-05 50.8 3.1 35 174-211 31-65 (262)
445 2f9l_A RAB11B, member RAS onco 85.9 0.42 1.4E-05 48.0 3.4 25 175-199 5-29 (199)
446 3iqw_A Tail-anchored protein t 85.8 0.87 3E-05 49.7 6.0 46 172-219 13-58 (334)
447 2v9p_A Replication protein E1; 85.7 0.44 1.5E-05 51.1 3.6 27 173-199 124-150 (305)
448 2olj_A Amino acid ABC transpor 85.7 0.39 1.3E-05 50.5 3.1 35 174-211 49-83 (263)
449 3gfo_A Cobalt import ATP-bindi 85.7 0.36 1.2E-05 51.2 2.8 35 174-211 33-67 (275)
450 4edh_A DTMP kinase, thymidylat 85.6 1.3 4.5E-05 44.7 7.0 33 175-208 6-38 (213)
451 2zu0_C Probable ATP-dependent 85.6 0.45 1.6E-05 50.2 3.6 25 174-198 45-69 (267)
452 2v3c_C SRP54, signal recogniti 85.6 0.34 1.2E-05 55.0 2.8 28 174-201 98-125 (432)
453 1g8f_A Sulfate adenylyltransfe 85.6 0.75 2.6E-05 53.1 5.6 46 156-201 374-421 (511)
454 2ged_A SR-beta, signal recogni 85.5 0.85 2.9E-05 45.3 5.5 26 174-199 47-72 (193)
455 2d2e_A SUFC protein; ABC-ATPas 85.5 0.42 1.4E-05 49.9 3.3 25 174-198 28-52 (250)
456 2afh_E Nitrogenase iron protei 85.5 0.99 3.4E-05 48.4 6.3 40 175-216 2-41 (289)
457 1svm_A Large T antigen; AAA+ f 85.4 0.47 1.6E-05 52.7 3.7 28 172-199 166-193 (377)
458 3f9v_A Minichromosome maintena 85.4 0.27 9.2E-06 58.7 1.9 46 154-199 295-351 (595)
459 1g5t_A COB(I)alamin adenosyltr 85.3 1.8 6.2E-05 42.6 7.4 25 176-200 29-53 (196)
460 2zej_A Dardarin, leucine-rich 85.3 0.4 1.4E-05 47.4 2.9 21 177-197 4-24 (184)
461 1j8m_F SRP54, signal recogniti 85.2 0.66 2.2E-05 49.8 4.7 37 175-213 98-134 (297)
462 1sgw_A Putative ABC transporte 85.2 0.33 1.1E-05 49.2 2.2 25 175-199 35-59 (214)
463 3cwq_A Para family chromosome 85.2 1.1 3.8E-05 45.3 6.2 42 177-221 2-44 (209)
464 1mv5_A LMRA, multidrug resista 85.2 0.45 1.5E-05 49.5 3.3 26 174-199 27-52 (243)
465 2pze_A Cystic fibrosis transme 85.1 0.39 1.3E-05 49.4 2.8 26 174-199 33-58 (229)
466 4g1u_C Hemin import ATP-bindin 85.1 0.39 1.3E-05 50.6 2.8 35 174-211 36-70 (266)
467 1ji0_A ABC transporter; ATP bi 85.1 0.39 1.3E-05 49.9 2.7 35 174-211 31-65 (240)
468 1vpl_A ABC transporter, ATP-bi 85.1 0.43 1.5E-05 50.0 3.1 35 174-211 40-74 (256)
469 1nlf_A Regulatory protein REPA 85.0 0.43 1.5E-05 51.0 3.1 27 174-200 29-55 (279)
470 3eph_A TRNA isopentenyltransfe 85.0 0.53 1.8E-05 52.1 3.8 25 176-200 3-27 (409)
471 2qmh_A HPR kinase/phosphorylas 85.0 0.39 1.3E-05 47.3 2.5 25 175-199 34-58 (205)
472 1g6h_A High-affinity branched- 84.9 0.4 1.4E-05 50.4 2.7 35 174-211 32-66 (257)
473 2ce2_X GTPase HRAS; signaling 84.9 0.47 1.6E-05 45.6 3.2 23 177-199 5-27 (166)
474 4gzl_A RAS-related C3 botulinu 84.9 0.53 1.8E-05 47.5 3.6 37 163-199 18-54 (204)
475 3zvl_A Bifunctional polynucleo 84.9 0.39 1.3E-05 54.7 2.8 28 172-199 255-282 (416)
476 2ghi_A Transport protein; mult 84.7 0.45 1.5E-05 50.0 3.0 26 174-199 45-70 (260)
477 2ff7_A Alpha-hemolysin translo 84.6 0.42 1.4E-05 49.8 2.7 35 174-211 34-68 (247)
478 3kjh_A CO dehydrogenase/acetyl 84.6 0.99 3.4E-05 47.2 5.7 42 178-221 3-44 (254)
479 2ixe_A Antigen peptide transpo 84.5 0.46 1.6E-05 50.3 3.0 35 174-211 44-78 (271)
480 1fzq_A ADP-ribosylation factor 84.5 0.72 2.5E-05 45.4 4.3 26 173-198 14-39 (181)
481 3gmt_A Adenylate kinase; ssgci 84.5 0.62 2.1E-05 47.4 3.8 25 176-200 9-33 (230)
482 1z2a_A RAS-related protein RAB 84.4 0.52 1.8E-05 45.5 3.2 25 175-199 5-29 (168)
483 2qi9_C Vitamin B12 import ATP- 84.4 0.45 1.5E-05 49.6 2.8 27 174-200 25-51 (249)
484 4dzz_A Plasmid partitioning pr 84.4 0.96 3.3E-05 45.5 5.3 41 176-218 2-43 (206)
485 1moz_A ARL1, ADP-ribosylation 84.3 0.57 1.9E-05 46.1 3.5 34 164-197 6-40 (183)
486 3con_A GTPase NRAS; structural 84.3 0.52 1.8E-05 46.8 3.2 24 176-199 22-45 (190)
487 2yz2_A Putative ABC transporte 84.2 0.49 1.7E-05 50.0 3.0 35 174-211 32-66 (266)
488 1fx0_A ATP synthase alpha chai 84.1 0.33 1.1E-05 55.2 1.7 79 174-256 162-266 (507)
489 2wjg_A FEOB, ferrous iron tran 84.0 0.61 2.1E-05 46.1 3.6 24 175-198 7-30 (188)
490 2nq2_C Hypothetical ABC transp 83.9 0.47 1.6E-05 49.6 2.7 26 174-199 30-55 (253)
491 2ihy_A ABC transporter, ATP-bi 83.8 0.48 1.6E-05 50.3 2.8 35 174-211 46-80 (279)
492 3sop_A Neuronal-specific septi 83.8 0.57 1.9E-05 49.6 3.3 24 177-200 4-27 (270)
493 1zj6_A ADP-ribosylation factor 83.8 0.84 2.9E-05 45.1 4.5 34 164-198 6-39 (187)
494 2vp4_A Deoxynucleoside kinase; 83.7 0.43 1.5E-05 49.2 2.3 25 174-198 19-43 (230)
495 1r8s_A ADP-ribosylation factor 83.6 0.62 2.1E-05 44.8 3.4 23 177-199 2-24 (164)
496 3hjn_A DTMP kinase, thymidylat 83.6 1.6 5.5E-05 43.5 6.4 26 177-202 2-27 (197)
497 1f6b_A SAR1; gtpases, N-termin 83.6 0.79 2.7E-05 45.9 4.2 32 166-197 15-47 (198)
498 3upu_A ATP-dependent DNA helic 83.5 1.3 4.5E-05 51.1 6.6 44 158-202 29-72 (459)
499 3fdi_A Uncharacterized protein 83.4 0.7 2.4E-05 46.4 3.7 25 176-200 7-31 (201)
500 3cr8_A Sulfate adenylyltranfer 83.3 1 3.5E-05 52.8 5.5 43 158-200 350-394 (552)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.8e-45 Score=442.49 Aligned_cols=301 Identities=13% Similarity=0.117 Sum_probs=233.0
Q ss_pred cccHHHHHHHHHHhCC---CCceEEEEEcCCCCcHHHHHHHHHH--HhhccCCCCeEEEEEecCCc--CHHHHHHHHHHH
Q 040332 157 ESRMPTLRSILSALED---PDVNMLGIYGMGGIGKTMLAEEVAR--KIKSDKIFDQVVFAEVSQSQ--DIRKIQGEIADK 229 (1210)
Q Consensus 157 ~gr~~~~~~l~~~l~~---~~~~vi~i~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~ 229 (1210)
+||+.++++|.++|.. ++.++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 4999999999999973 3689999999999999999999999 56777899999999999985 789999999999
Q ss_pred hCCCcc----cCCccc------c------cCc-cEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhhhcCC-
Q 040332 230 LGLKFH----EESEPG------R------EEK-KILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDVLSRKMD- 291 (1210)
Q Consensus 230 l~~~~~----~~~~~~------~------~~k-r~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~~~~- 291 (1210)
++.... ...... . .++ ||||||||||+.+++ .+. ..+||+||||||++.++.. ++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~-~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA-ASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG-CCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH-cCC
Confidence 986532 111111 1 675 999999999998754 111 1269999999999999865 43
Q ss_pred CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCC
Q 040332 292 SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDWKDALEQLRRPPLKN 371 (1210)
Q Consensus 292 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~ 371 (1210)
...+|+|++|+.++||+||.++++....++.+.+++++|+++|+|+||||+++|+.|+.+ . |+.+ +.+..... .
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~-~ 357 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLE-S 357 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHH-H
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhh-c
Confidence 446899999999999999999998655557888999999999999999999999998743 3 4333 22221100 0
Q ss_pred ccccchhHHHHHHhhhcCCCccchhhhHh-----------hhccCc-cccHHHHHHHHhhc--CcCCCC---CcHHHHHH
Q 040332 372 FMNIQPNAHKAIKLSYDNLGGEELKNVFL-----------LIGYTV-IESIDDLLMYGMGL--GLFQGV---SKMEEARA 434 (1210)
Q Consensus 372 ~~~~~~~~~~~l~~sy~~L~~~~lk~cfl-----------~~s~fp-~~~~~~Li~~w~a~--g~~~~~---~~~e~~~~ 434 (1210)
. ....+.+++.+||++||+ ++|.||+ |||+|| ++..+ +++|+|+ ||+... .+.+++++
T Consensus 358 ~--~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 358 R--GLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp H--CSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH
T ss_pred c--cHHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH
Confidence 0 134567889999999997 5999999 999998 44333 8999999 999643 23454443
Q ss_pred HHHHHHHHHHhhcceeecccCCCCeEEhhHHHHHHHHHHHccCCc
Q 040332 435 RVHTLVHKLKASCMLLDHLSKNEEFFSMHDVVRDVAISIASSEHN 479 (1210)
Q Consensus 435 ~~~~~~~~L~~~~ll~~~~~~~~~~~~mHdlv~~~~~~~~~~~~~ 479 (1210)
++++|+++||++....+...+|+|||+||+||+.++.+++.
T Consensus 433 ----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 ----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp ----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred ----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 79999999999887554557899999999999998877653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.6e-36 Score=362.70 Aligned_cols=271 Identities=19% Similarity=0.184 Sum_probs=215.9
Q ss_pred ccccHHHHHHHHHHhCC-CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe-EEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 156 FESRMPTLRSILSALED-PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQ-VVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 156 ~~gr~~~~~~l~~~l~~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
.+||+.++++|.++|.+ ++.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999974 56899999999999999999999998777778987 99999999999888888887754321
Q ss_pred ---cccCCc----c--------c--------ccCccEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhhhcC
Q 040332 234 ---FHEESE----P--------G--------REEKKILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDVLSRKM 290 (1210)
Q Consensus 234 ---~~~~~~----~--------~--------~~~kr~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~~~ 290 (1210)
...... . . ..+||+||||||||+.+.|+.+. +||+||||||++.++.. +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh-c
Confidence 110000 0 0 04799999999999999998752 68999999999998743 2
Q ss_pred CCcceeeec------CCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCC-ChHHHHHHHHH
Q 040332 291 DSQQNFAVG------ILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALRNNK-SLFDWKDALEQ 363 (1210)
Q Consensus 291 ~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~-~~~~w~~~~~~ 363 (1210)
.....|.++ +|+.+|||+||.++.+.. ..++..+| |+|+||||+++|+.|+.+. +..+|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 233457777 999999999999996532 12233343 9999999999999999763 67788752
Q ss_pred hcCCCCCCccccchhHHHHHHhhhcCCCccch-hhhHhhhccCc---cccHHHHHHHHhhcCcCCCCCcHHHHHHHHHHH
Q 040332 364 LRRPPLKNFMNIQPNAHKAIKLSYDNLGGEEL-KNVFLLIGYTV---IESIDDLLMYGMGLGLFQGVSKMEEARARVHTL 439 (1210)
Q Consensus 364 l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~cfl~~s~fp---~~~~~~Li~~w~a~g~~~~~~~~e~~~~~~~~~ 439 (1210)
....+..+|.+||+.||++ . |.||+|||+|| .|+.+.++.+|+++|. ++ ..++
T Consensus 351 -----------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed----Ae~~ 407 (1221)
T 1vt4_I 351 -----------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD----VMVV 407 (1221)
T ss_dssp -----------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH----HHHH
T ss_pred -----------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------HH----HHHH
Confidence 1467899999999999984 7 99999999998 5888999999998871 22 3457
Q ss_pred HHHHHhhcceeecccCCCCeEEhhHHHHHHH
Q 040332 440 VHKLKASCMLLDHLSKNEEFFSMHDVVRDVA 470 (1210)
Q Consensus 440 ~~~L~~~~ll~~~~~~~~~~~~mHdlv~~~~ 470 (1210)
+++|+++||++... ...+|+|||++++++
T Consensus 408 L~eLvdRSLLq~d~--~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 408 VNKLHKYSLVEKQP--KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHTSSSSSBCS--SSSEEBCCCHHHHHH
T ss_pred HHHHHhhCCEEEeC--CCCEEEehHHHHHHh
Confidence 99999999998742 237899999999965
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-36 Score=379.64 Aligned_cols=574 Identities=17% Similarity=0.050 Sum_probs=320.8
Q ss_pred ccceeEEEeccccccc----CC-CcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccc-cCCc--cccC
Q 040332 500 VKLYTSIVLRDVKTNL----LP-ELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLL-SLPS--SLVL 571 (1210)
Q Consensus 500 ~~~~~~l~l~~~~~~~----l~-~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~--~i~~ 571 (1210)
..+++.+.+.++.+.. ++ .+.++++|+.+ ....+....++ ..|..+++|++|+|++|.+. .+|. .+++
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l---~~~~~~~~~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 124 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL---FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE---ECTTSCEEECC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGG
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCccccc---CCcCCCcCCCc-hhhccCCCCCEEECCCCcCCCcCCChHHHhC
Confidence 3568888888776533 22 34445555444 33333333333 34688888999999988887 4676 7888
Q ss_pred CCCCcEEEecCccCCC--CCCC-CCCCCCcEEEeecCCCcccCc-c---cCCCCCCCEEecCCCCCCCccChhhhcCCCc
Q 040332 572 LSNLRTLSLYYCKLLD--ISGI-GDLKKLEFLCLRGCDIRQLPI-E---VGELICLKLLDLRDCSKLEVIPPHILSNLSH 644 (1210)
Q Consensus 572 l~~L~~L~L~~~~~~~--~~~i-~~L~~L~~L~l~~~~l~~lp~-~---i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~ 644 (1210)
+++|++|++++|.+.. |..+ .++++|++|++++|.+...+. . ++++++|++|++++| .+....+ ++++++
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~ 201 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVD--VSRCVN 201 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS-EEESCCB--CTTCTT
T ss_pred CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC-cccccCC--cccCCc
Confidence 8999999999888766 4444 788889999998888876543 3 688888888888888 3443333 377888
Q ss_pred ccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCC-CCc-cccccCceeEEEEcccccccCcCCcceEEe
Q 040332 645 LEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCL-PRG-LFFEKLERYRILIGDFWNWKYNICSRDFRI 722 (1210)
Q Consensus 645 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~-~~~-~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l 722 (1210)
|++|++++|.+ .+..+. ++.+++|+.|++++|.+... |.. ..+.+|+.|.+..+........
T Consensus 202 L~~L~Ls~n~l-------~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------- 265 (768)
T 3rgz_A 202 LEFLDVSSNNF-------STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-------- 265 (768)
T ss_dssp CCEEECCSSCC-------CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--------
T ss_pred CCEEECcCCcC-------CCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--------
Confidence 88888888876 233333 88888888888888877632 222 2445555555433322111000
Q ss_pred cCCcccchHHHHHHHhccccEEeecccccccch-hhhhhhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhh
Q 040332 723 GLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVE-SFANELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRS 801 (1210)
Q Consensus 723 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~ 801 (1210)
. .+++|+.|+++++ ... .++..+. ..+++|++|++++|.....++..+..+++|+.|. +.
T Consensus 266 -----------~--~l~~L~~L~L~~n---~l~~~ip~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~--L~ 326 (768)
T 3rgz_A 266 -----------L--PLKSLQYLSLAEN---KFTGEIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA--LS 326 (768)
T ss_dssp -----------C--CCTTCCEEECCSS---EEEESCCCCSC-TTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE--CC
T ss_pred -----------c--ccCCCCEEECcCC---ccCCccCHHHH-hhcCcCCEEECcCCcCCCccchHHhcCCCccEEE--CC
Confidence 0 2456666666664 222 2222221 1136677777776655545555555566666665 55
Q ss_pred ccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcc-cccEEEEeccccccceecccccccccccccc--c
Q 040332 802 NEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFV-RLQHLQIWGCPVLEEIIVVDDQEERNKNIVM--F 878 (1210)
Q Consensus 802 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~--~ 878 (1210)
++.....++ ...+..+++|++|++++|.....++.. +..++ +|+.|++++|.....++ ..+.. +
T Consensus 327 ~n~l~~~ip--~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~~L~~L~Ls~N~l~~~~~---------~~~~~~~~ 393 (768)
T 3rgz_A 327 SNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPES--LTNLSASLLTLDLSSNNFSGPIL---------PNLCQNPK 393 (768)
T ss_dssp SSEEEEECC--HHHHTTCTTCCEEECCSSEEEECCCTT--HHHHTTTCSEEECCSSEEEEECC---------TTTTCSTT
T ss_pred CCcccCcCC--HHHHhcCCCCCEEeCcCCccCccccHH--HHhhhcCCcEEEccCCCcCCCcC---------hhhhhccc
Confidence 543322222 122445566666666666433333221 34444 66666666665222221 11112 5
Q ss_pred cccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeecccccccccc--c
Q 040332 879 PQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINK--C 956 (1210)
Q Consensus 879 p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~--~ 956 (1210)
++|++|++++|.-...++.. +..+++|+.|++++| .+... .+.....+++|+.|++++|.+....+ .
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N-~l~~~-------~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 462 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFN-YLSGT-------IPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462 (768)
T ss_dssp CCCCEEECCSSEEEEECCGG---GGGCTTCCEEECCSS-EEESC-------CCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CCccEEECCCCccccccCHH---HhcCCCCCEEECcCC-cccCc-------ccHHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 56666666665333233332 345666666666666 22211 11223345666666666666553332 2
Q ss_pred cccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhhhccccCcccccccc
Q 040332 957 QLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILKQE 1036 (1210)
Q Consensus 957 ~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~~~ 1036 (1210)
..+++|+.|+++.|.++. ..+..+..+++|+.|+++ +|. +....+..
T Consensus 463 ~~l~~L~~L~L~~N~l~~--------~~p~~l~~l~~L~~L~L~-~N~------------------------l~~~~p~~ 509 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTG--------EIPSGLSNCTNLNWISLS-NNR------------------------LTGEIPKW 509 (768)
T ss_dssp GGCTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECC-SSC------------------------CCSCCCGG
T ss_pred cCCCCceEEEecCCcccC--------cCCHHHhcCCCCCEEEcc-CCc------------------------cCCcCChH
Confidence 255666666665555531 122234556666666666 333 22222233
Q ss_pred ccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcceecchh-------------------------------
Q 040332 1037 SSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMKVLTSS------------------------------- 1085 (1210)
Q Consensus 1037 l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~------------------------------- 1085 (1210)
+..+++|+.|++++|.....+|..+..+++|+.|++++|+-...+ |..
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI-PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC-CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC-ChHHhcccchhhhhcccccccccccccccccccc
Confidence 444555555555555444444444445555555555554211111 111
Q ss_pred --------------------------------------HHhhhhhceEEeEcccccHHHHHhhccccccccccccccccc
Q 040332 1086 --------------------------------------IAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKD 1127 (1210)
Q Consensus 1086 --------------------------------------~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~ 1127 (1210)
.++.+++|+.|++++|.-...+| ..+..+++|+.
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip--------~~l~~l~~L~~ 660 (768)
T 3rgz_A 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP--------KEIGSMPYLFI 660 (768)
T ss_dssp SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC--------GGGGGCTTCCE
T ss_pred ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC--------HHHhccccCCE
Confidence 12234566667776655332333 24566777777
Q ss_pred ccccccccccccccCCccccCCcccEEeeccCCCccccCCCCcCCCceeEEEeccc
Q 040332 1128 LELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSGGELSTPKLLKVQLDEF 1183 (1210)
Q Consensus 1128 L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~~~L~~l~i~~C 1183 (1210)
|+++++.--..+|..... +++|+.|++++|.--..+|..+..+++|+.|++++|
T Consensus 661 L~Ls~N~l~g~ip~~l~~--L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGD--LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp EECCSSCCCSCCCGGGGG--CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred EeCcCCccCCCCChHHhC--CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 777765544456654443 377777777776555567777777777777777763
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-35 Score=398.93 Aligned_cols=304 Identities=19% Similarity=0.275 Sum_probs=240.6
Q ss_pred ccCcccccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhc-cC-CCCeEEEEEecCCcC--HHHHH
Q 040332 150 SKDYEAFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKS-DK-IFDQVVFAEVSQSQD--IRKIQ 223 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~-~F~~~~wv~vs~~~~--~~~~~ 223 (1210)
+.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. .|+.++||++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 4456779999999999999995 467899999999999999999999987643 33 347788999998543 34456
Q ss_pred HHHHHHhCCCcccCCccc----c---------c--CccEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhhh
Q 040332 224 GEIADKLGLKFHEESEPG----R---------E--EKKILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDVLSR 288 (1210)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~----~---------~--~kr~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~ 288 (1210)
..++..+........... . . ++||||||||||+..+|+.+ .+||+||||||++.++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 677777765432211110 0 2 56999999999999888764 468999999999999755
Q ss_pred cCCCcceeeecC-CCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 040332 289 KMDSQQNFAVGI-LKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDWKDALEQLRRP 367 (1210)
Q Consensus 289 ~~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~ 367 (1210)
..+....+.+++ |+.+||++||...++.. .+...+++++|+++|+|+||||+++|++|+.+. ..|+.+++.+...
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNK 348 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSC
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhh
Confidence 466777899996 99999999999998632 234556799999999999999999999999654 4799999988655
Q ss_pred CCCCc----cccchhHHHHHHhhhcCCCccchhhhHhhhccCc---cccHHHHHHHHhhcCcCCCCCcHHHHHHHHHHHH
Q 040332 368 PLKNF----MNIQPNAHKAIKLSYDNLGGEELKNVFLLIGYTV---IESIDDLLMYGMGLGLFQGVSKMEEARARVHTLV 440 (1210)
Q Consensus 368 ~~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp---~~~~~~Li~~w~a~g~~~~~~~~e~~~~~~~~~~ 440 (1210)
..... ....+.+..++.+||+.||+ +.|.||+|||+|| .|+.+.++.+|.+++ ++ +.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~~----~~~~l 415 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET--------EE----VEDIL 415 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------HH----HHHHH
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------HH----HHHHH
Confidence 43322 11235799999999999998 5899999999998 689999999996652 22 34579
Q ss_pred HHHHhhcceeecccCCCCeEEhhHHHHHHHHHHHccC
Q 040332 441 HKLKASCMLLDHLSKNEEFFSMHDVVRDVAISIASSE 477 (1210)
Q Consensus 441 ~~L~~~~ll~~~~~~~~~~~~mHdlv~~~~~~~~~~~ 477 (1210)
++|+++||++....+...+|+|||+||++|+.++.++
T Consensus 416 ~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 416 QEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999998765554457999999999999997765
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-35 Score=376.18 Aligned_cols=577 Identities=13% Similarity=0.012 Sum_probs=390.9
Q ss_pred CchhHHHhhhcCCCCccc-ccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CC--CCCCCCCC
Q 040332 523 PQLKLFLIHADKESPSLS-IANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--IS--GIGDLKKL 597 (1210)
Q Consensus 523 ~~Lr~L~~~~~~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~--~i~~L~~L 597 (1210)
.+++.|++......+... ++ ..|..+++|++++++.+.+..+|+.++.+++|++|+|++|.+.. |. .++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccC-hhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 355555444333222211 33 45788999999999999998899999999999999999999886 55 89999999
Q ss_pred cEEEeecCCCc-ccCccc-CCCCCCCEEecCCCCCCCccChhh---hcCCCcccEEEccCCCCccccccccccCcccccc
Q 040332 598 EFLCLRGCDIR-QLPIEV-GELICLKLLDLRDCSKLEVIPPHI---LSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNE 672 (1210)
Q Consensus 598 ~~L~l~~~~l~-~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~---l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 672 (1210)
++|++++|.+. ..|..+ .++++|++|++++| .+...++.. ++++++|++|++++|.+. + ...+..
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-------~--~~~~~~ 198 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKIS-------G--DVDVSR 198 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEE-------S--CCBCTT
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCccc-------c--cCCccc
Confidence 99999999876 456555 89999999999999 666665544 689999999999998762 2 223478
Q ss_pred CCCCCEEEeeccCCCCCCCc-cccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeeccccc
Q 040332 673 LKHLTSLQLRIKDINCLPRG-LFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQE 751 (1210)
Q Consensus 673 L~~L~~L~l~~~~~~~~~~~-~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 751 (1210)
+++|+.|++++|.+...... ..+.+|+.|.+ ..+......+..+..+++|+.|+++++
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L-------------------s~n~l~~~~~~~l~~l~~L~~L~Ls~n-- 257 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI-------------------SGNKLSGDFSRAISTCTELKLLNISSN-- 257 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEEC-------------------CSSCCCSCHHHHTTTCSSCCEEECCSS--
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEEC-------------------cCCcCCCcccHHHhcCCCCCEEECCCC--
Confidence 99999999999998764433 23445554443 333333333444456788888888876
Q ss_pred ccchhhhhhhhhcccccCcEEEeeCCcccccccCCccc-ccchhhHHHHhhccccchhhhcccccccccCCcceEEeecC
Q 040332 752 HDVESFANELVKVGSSQLKHLWIEGCHEAHDALNSAES-KRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNC 830 (1210)
Q Consensus 752 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 830 (1210)
......... .+++|++|++++|.....++..+.. +++|+.|. +.++.....+ +..+..+++|++|++++|
T Consensus 258 -~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~--Ls~n~l~~~~---p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 258 -QFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD--LSGNHFYGAV---PPFFGSCSLLESLALSSN 328 (768)
T ss_dssp -CCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE--CCSSEEEECC---CGGGGGCTTCCEEECCSS
T ss_pred -cccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE--CcCCcCCCcc---chHHhcCCCccEEECCCC
Confidence 222221111 4688888888887765555555444 36777776 6665432222 345566778888888777
Q ss_pred CCccccccchhhhhcccccEEEEeccccccceecccccccccccccccc-ccceeecccCcccccccCCCcccccCCCcc
Q 040332 831 RNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFP-QLQYLEMSNLEKLTSFCTGDVNIIEFPSLK 909 (1210)
Q Consensus 831 ~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~ 909 (1210)
.....++ ...++.+++|++|++++|.....+ +..+..++ +|++|+++++.--..++.... ...+++|+
T Consensus 329 ~l~~~ip-~~~l~~l~~L~~L~Ls~n~l~~~~---------p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~-~~~~~~L~ 397 (768)
T 3rgz_A 329 NFSGELP-MDTLLKMRGLKVLDLSFNEFSGEL---------PESLTNLSASLLTLDLSSNNFSGPILPNLC-QNPKNTLQ 397 (768)
T ss_dssp EEEEECC-HHHHTTCTTCCEEECCSSEEEECC---------CTTHHHHTTTCSEEECCSSEEEEECCTTTT-CSTTCCCC
T ss_pred cccCcCC-HHHHhcCCCCCEEeCcCCccCccc---------cHHHHhhhcCCcEEEccCCCcCCCcChhhh-hcccCCcc
Confidence 5443443 233567778888888877622233 23344455 788888877544333333311 12267788
Q ss_pred eeeeecCCCcccccccccccccccccccCCcceeeecccccccccc--ccccccceEeeecccccccCCccccccchhHH
Q 040332 910 ELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINK--CQLFREDLLCKLKCLDVEFGDERTSILSLDDF 987 (1210)
Q Consensus 910 ~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~--~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~ 987 (1210)
+|++++|.--... +.....+++|+.|++++|.+....+ ...+++|+.|+++.|.++. ..+..
T Consensus 398 ~L~L~~n~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~--------~~p~~ 461 (768)
T 3rgz_A 398 ELYLQNNGFTGKI--------PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG--------EIPQE 461 (768)
T ss_dssp EEECCSSEEEEEC--------CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS--------CCCGG
T ss_pred EEECCCCcccccc--------CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC--------cCCHH
Confidence 8888877322222 2234457788888888887664433 3367788888886666631 22334
Q ss_pred HHHhcccceEEEEccccccceeecccccchhhhhhhccccCccccccccccCcCcccEEEEeccccccccCCCCccccCc
Q 040332 988 LQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNLINLVPSSLSFQNL 1067 (1210)
Q Consensus 988 ~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L 1067 (1210)
+..+++|+.|+++ + +.+....+..+..+++|+.|++++|.....+|..+..+++|
T Consensus 462 ~~~l~~L~~L~L~-~------------------------N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 462 LMYVKTLETLILD-F------------------------NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGGCTTCCEEECC-S------------------------SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HcCCCCceEEEec-C------------------------CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 5677888888887 2 33443444557888999999999998766777778899999
Q ss_pred cEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhcccc---------------------------------
Q 040332 1068 TTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDD--------------------------------- 1114 (1210)
Q Consensus 1068 ~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~--------------------------------- 1114 (1210)
++|++++| ++....|. .++.+++|+.|++++|+....+|...+..
T Consensus 517 ~~L~L~~N-~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 517 AILKLSNN-SFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp CEEECCSS-CCEEECCG-GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CEEECCCC-cccCcCCH-HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 99999999 56644454 46889999999999987554444321110
Q ss_pred -----------------------------cccccccccccccccccccccccccccCCccccCCcccEEeeccCCCcccc
Q 040332 1115 -----------------------------AVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIF 1165 (1210)
Q Consensus 1115 -----------------------------~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~l 1165 (1210)
....+..+++|+.|+++++.--..+|..... +++|+.|+++++.--..+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~--l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS--MPYLFILNLGHNDISGSI 672 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG--CTTCCEEECCSSCCCSCC
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc--cccCCEEeCcCCccCCCC
Confidence 0012345678999999987655567765544 599999999998766689
Q ss_pred CCCCcCCCceeEEEeccccccccccccchhHHHHHH
Q 040332 1166 SGGELSTPKLLKVQLDEFNKELWTWERDLNTTIQTL 1201 (1210)
Q Consensus 1166 p~~~~~~~~L~~l~i~~C~~~~~~~~~~lp~~l~~l 1201 (1210)
|..+..+++|+.|++++| ...+.+|..+..+
T Consensus 673 p~~l~~L~~L~~LdLs~N-----~l~g~ip~~l~~l 703 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSN-----KLDGRIPQAMSAL 703 (768)
T ss_dssp CGGGGGCTTCCEEECCSS-----CCEECCCGGGGGC
T ss_pred ChHHhCCCCCCEEECCCC-----cccCcCChHHhCC
Confidence 999999999999999983 2334455544433
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.9e-33 Score=348.93 Aligned_cols=546 Identities=16% Similarity=0.120 Sum_probs=275.7
Q ss_pred ccchhhhcCCcceEEEecCcccccC-CccccCCCCCcEEEecCccCCC-CC-CCCCCCCCcEEEeecCCCcccC-cccCC
Q 040332 541 IANNFFERMIQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD-IS-GIGDLKKLEFLCLRGCDIRQLP-IEVGE 616 (1210)
Q Consensus 541 ~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~-~~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~ 616 (1210)
++...|.++++|++|++++|.+..+ |..++++++|++|++++|.+.. |+ .|+++++|++|++++|.+..+| ..+++
T Consensus 40 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 119 (680)
T 1ziw_A 40 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119 (680)
T ss_dssp CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT
T ss_pred cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccc
Confidence 3444456666666666666666544 4455666666666666666655 33 3666666666666666666554 34566
Q ss_pred CCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCcccc--ccCCCCCEEEeeccCCCCCCCcc-
Q 040332 617 LICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASL--NELKHLTSLQLRIKDINCLPRGL- 693 (1210)
Q Consensus 617 l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l--~~L~~L~~L~l~~~~~~~~~~~~- 693 (1210)
+++|++|++++| .+...++..++++++|++|++++|.+. +..+..+ ..+++|+.|++++|.+..++...
T Consensus 120 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 120 QKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQ-------ALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp CTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCC-------CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred cCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccc-------ccCHHHhhccccccccEEECCCCcccccChhhh
Confidence 666666666665 344444333456666666666665441 1122222 23455666666666555443321
Q ss_pred -ccccCceeEEEEcccccccCcCCcceEEecCCcccc-hHHHHH--HHhccccEEeecccccccchhhh-hhhhhccccc
Q 040332 694 -FFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRIC-LKDVLI--VQLQGIEHLGLYGLQEHDVESFA-NELVKVGSSQ 768 (1210)
Q Consensus 694 -~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~~~ 768 (1210)
.+.+|+.+.+ ....... ...... ...++|+.|+++++ ...... ..+.....++
T Consensus 192 ~~l~~L~~L~l-------------------~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n---~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 192 HAIGRLFGLFL-------------------NNVQLGPSLTEKLCLELANTSIRNLSLSNS---QLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp GGSSEECEEEC-------------------TTCCCHHHHHHHHHHHHTTSCCCEEECTTS---CCCEECTTTTGGGGGSC
T ss_pred hhhhhhhhhhc-------------------cccccChhhHHHHHHHhhhccccEEEccCC---cccccChhHhhccCcCC
Confidence 1222222211 1000000 000000 01256777777664 222221 1111111234
Q ss_pred CcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCcc-----cccc--chh
Q 040332 769 LKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLG-----CLFS--SSI 841 (1210)
Q Consensus 769 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~~--~~~ 841 (1210)
|++|++++|......+..+..+++|+.|. +.++.. ..+. +..+..+++|+.|+++++.... .++. ...
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--L~~n~l-~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFF--LEYNNI-QHLF--SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEE--CCSCCB-SEEC--TTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred CCEEECCCCCcCccCcccccCcccccEee--CCCCcc-CccC--hhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 77777777654433333344455555555 444321 1111 2344455666666665432111 1110 012
Q ss_pred hhhcccccEEEEeccccccceeccccccccccccccccccceeecccCc-ccccccCCCcccccCCCcceeeeecCCCcc
Q 040332 842 VSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLE-KLTSFCTGDVNIIEFPSLKELRISRCPKFM 920 (1210)
Q Consensus 842 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~-~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~ 920 (1210)
++.+++|++|++++|. +..+. +..+..+++|++|+++++. .+..++.........++|+.|++++|. +.
T Consensus 325 ~~~l~~L~~L~l~~n~-l~~~~--------~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~ 394 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDND-IPGIK--------SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-IS 394 (680)
T ss_dssp TTTCTTCCEEECCSCC-BCCCC--------TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CC
T ss_pred cccCCCCCEEECCCCc-cCCCC--------hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CC
Confidence 3455666666666554 33331 2234455666666666543 122222211000112456666666652 32
Q ss_pred cccccccccccccccccCCcceeeeccccccccc---cccccccceEeeecccccccCCccccccchhHHHHHhcccceE
Q 040332 921 VKYKRITNDLMEKGQVFPSLEELSVDVKHIAAIN---KCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVL 997 (1210)
Q Consensus 921 ~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~---~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L 997 (1210)
.++ +.....+++|+.|++++|.+.... ....+++|+.|+++.|++.. .....+..+++|+.|
T Consensus 395 ~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 395 KIE-------SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ--------LTRNSFALVPSLQRL 459 (680)
T ss_dssp EEC-------TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE--------CCTTTTTTCTTCCEE
T ss_pred eEC-------hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce--------eChhhhhcCcccccc
Confidence 221 112234566666666666654321 22355666666664444421 112234456666666
Q ss_pred EEEccccccceeecccccchhhhhhhccccCccccccccccCcCcccEEEEeccccccccCCC-CccccCccEEEEccCC
Q 040332 998 KIVGECYVGESEEKVENGMEVIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNLINLVPS-SLSFQNLTTLKVSYCK 1076 (1210)
Q Consensus 998 ~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~-~~~l~~L~~L~i~~c~ 1076 (1210)
+++ +|.+ ..+.. .+..+..+++|+.|++++|. ++.+++. +..+++|++|++++|
T Consensus 460 ~l~-~n~l---------------------~~~~~-~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N- 514 (680)
T 1ziw_A 460 MLR-RVAL---------------------KNVDS-SPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN- 514 (680)
T ss_dssp ECT-TSCC---------------------BCTTC-SSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-
T ss_pred hhc-cccc---------------------ccccc-CCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-
Confidence 665 2221 11111 22335667778888887765 4455443 457778888888877
Q ss_pred Ccceecch-------hHHhhhhhceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCC
Q 040332 1077 GLMKVLTS-------SIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFP 1149 (1210)
Q Consensus 1077 ~L~~l~~~-------~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~ 1149 (1210)
++..++.. ..++.+++|+.|++++|. ++.++. .....+++|+.|++++ .+++.+|.+... .++
T Consensus 515 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~-------~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~-~l~ 584 (680)
T 1ziw_A 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPV-------EVFKDLFELKIIDLGL-NNLNTLPASVFN-NQV 584 (680)
T ss_dssp CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCT-------TTTTTCTTCCEEECCS-SCCCCCCTTTTT-TCT
T ss_pred CccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCH-------HHcccccCcceeECCC-CCCCcCCHhHhC-CCC
Confidence 56554221 125667788888888754 444542 2356777888888865 467777765433 457
Q ss_pred cccEEeeccCCCccccCCCCc--CCCceeEEEecc
Q 040332 1150 SLERILVNDCPSMKIFSGGEL--STPKLLKVQLDE 1182 (1210)
Q Consensus 1150 sL~~L~i~~C~~l~~lp~~~~--~~~~L~~l~i~~ 1182 (1210)
+|+.|++++| +++.+|.... .+++|+.+++.+
T Consensus 585 ~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 585 SLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp TCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence 8888888875 5666665432 467788888764
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-32 Score=344.51 Aligned_cols=552 Identities=13% Similarity=0.092 Sum_probs=382.8
Q ss_pred CcceEEEecCcccccCCc-cccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEec
Q 040332 550 IQVRVINLSYVDLLSLPS-SLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDL 625 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l 625 (1210)
+.+++|++++|.+..+|. .+.++++|++|++++|.+.. |..|+++++|++|++++|.+..+|. .++++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 679999999999998875 59999999999999999988 5669999999999999999999987 5999999999999
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCcc----ccccCcee
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL----FFEKLERY 701 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~----~~~~L~~l 701 (1210)
++| .+..+++..++++++|++|++++|.+ .+..+..++.+++|+.|++++|.+..++... ...+|+.+
T Consensus 105 ~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 105 MSN-SIQKIKNNPFVKQKNLITLDLSHNGL-------SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp CSS-CCCCCCSCTTTTCTTCCEEECCSSCC-------SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCC-ccCccChhHccccCCCCEEECCCCcc-------cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 999 77888876689999999999999977 3455677889999999999999988776542 22455555
Q ss_pred EEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhh-hcccccCcEEEeeCCccc
Q 040332 702 RILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELV-KVGSSQLKHLWIEGCHEA 780 (1210)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~-~~~~~~L~~L~l~~~~~~ 780 (1210)
.+. .+......+..+..+++|+.|.+.++ .-.......+. ....++|++|++++|...
T Consensus 177 ~L~-------------------~n~l~~~~~~~~~~l~~L~~L~l~~~--~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 177 ELS-------------------SNQIKEFSPGCFHAIGRLFGLFLNNV--QLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp ECT-------------------TCCCCCBCTTGGGGSSEECEEECTTC--CCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred ECC-------------------CCcccccChhhhhhhhhhhhhhcccc--ccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 442 22222222233344678888888775 21111111110 012488999999998765
Q ss_pred ccccCCcccccc--hhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEecccc
Q 040332 781 HDALNSAESKRQ--EESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPV 858 (1210)
Q Consensus 781 ~~~~~~~~~~~~--L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~ 858 (1210)
...+..+..++. |+.|. ++++. +..+. +..+..+++|++|+++++... .+++ ..++.+++|+.|+++++..
T Consensus 236 ~~~~~~~~~l~~~~L~~L~--Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 236 TTSNTTFLGLKWTNLTMLD--LSYNN-LNVVG--NDSFAWLPQLEYFFLEYNNIQ-HLFS-HSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp EECTTTTGGGGGSCCCEEE--CTTSC-CCEEC--TTTTTTCTTCCEEECCSCCBS-EECT-TTTTTCTTCCEEECTTCBC
T ss_pred ccChhHhhccCcCCCCEEE--CCCCC-cCccC--cccccCcccccEeeCCCCccC-ccCh-hhhcCCCCccEEeccchhh
Confidence 544444444433 77776 66553 22222 345667788888888887543 3333 2347788888888876542
Q ss_pred ccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCC-ccccccccccccccccccc
Q 040332 859 LEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPK-FMVKYKRITNDLMEKGQVF 937 (1210)
Q Consensus 859 l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~-L~~~~~~~~~~l~~~~~~~ 937 (1210)
-..+....-..-....+..+++|++|+++++ .+..+.... +..+++|++|++++|.. +..++.... .....
T Consensus 309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n~~~~~~l~~~~f-----~~~~~ 380 (680)
T 1ziw_A 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNM--FTGLINLKYLSLSNSFTSLRTLTNETF-----VSLAH 380 (680)
T ss_dssp CC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTT--TTTCTTCCEEECTTCBSCCCEECTTTT-----GGGTT
T ss_pred hcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhH--hccccCCcEEECCCCchhhhhcchhhh-----ccccc
Confidence 2111100000001224566788888888874 455554332 45678888888888742 222211100 01123
Q ss_pred CCcceeeecccccccccc--ccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeeccccc
Q 040332 938 PSLEELSVDVKHIAAINK--CQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENG 1015 (1210)
Q Consensus 938 ~sL~~L~l~~~~~~~~~~--~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~ 1015 (1210)
++|+.|++++|.+....+ ...+++|+.|+++.|.+. ...+...+..+++|++|+++ +
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~~l~~L~~L~Ls-~------------- 439 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-------QELTGQEWRGLENIFEIYLS-Y------------- 439 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE-------EECCSGGGTTCTTCCEEECC-S-------------
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc-------cccCcccccCcccccEEecC-C-------------
Confidence 678889998888776654 336788888888766663 11222356678889999888 2
Q ss_pred chhhhhhhccccCccccccccccCcCcccEEEEeccccc--cccCCCCccccCccEEEEccCCCcceecchhHHhhhhhc
Q 040332 1016 MEVIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNL--INLVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRL 1093 (1210)
Q Consensus 1016 ~~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L--~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL 1093 (1210)
+.+..+.+..+..+++|+.|++++|..- ..++..+..+++|+.|++++| ++..+++ ..+..+++|
T Consensus 440 -----------n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L 506 (680)
T 1ziw_A 440 -----------NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIND-DMLEGLEKL 506 (680)
T ss_dssp -----------CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred -----------CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCCh-hhhcccccc
Confidence 3345555566778899999999987642 445666789999999999998 6888744 456889999
Q ss_pred eEEeEcccccHHHHHhhccc-ccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCccccCCCC-cC
Q 040332 1094 KEMRVSECNMITEIVLAVVD-DAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSGGE-LS 1171 (1210)
Q Consensus 1094 ~~L~i~~c~~l~~l~~~~~~-~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~-~~ 1171 (1210)
++|++++|. ++.++..... +....+..+++|+.|+++++ +++.+|.+... .+++|++|++++ .+++.+|.+. ..
T Consensus 507 ~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~-~l~~L~~L~Ls~-N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 507 EILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFK-DLFELKIIDLGL-NNLNTLPASVFNN 582 (680)
T ss_dssp CEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred CEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcc-cccCcceeECCC-CCCCcCCHhHhCC
Confidence 999999975 5555321100 01112578899999999885 68888875443 569999999987 5788998764 67
Q ss_pred CCceeEEEeccc
Q 040332 1172 TPKLLKVQLDEF 1183 (1210)
Q Consensus 1172 ~~~L~~l~i~~C 1183 (1210)
+++|+.|++++|
T Consensus 583 l~~L~~L~L~~N 594 (680)
T 1ziw_A 583 QVSLKSLNLQKN 594 (680)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEECCCC
Confidence 899999999984
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-32 Score=341.14 Aligned_cols=175 Identities=19% Similarity=0.243 Sum_probs=126.2
Q ss_pred EEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccC-CccccCCCCCcEEEecCc
Q 040332 505 SIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYC 583 (1210)
Q Consensus 505 ~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 583 (1210)
.+...+..+..+|... .++++.|.+..+. ...++...|.++++|++|++++|.+..+ |..|.++++|++|++++|
T Consensus 15 ~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDI-PSSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSSCCTTS-CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCcccCCCCC-CCCcCEEECCCCC---cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4555555666666422 2566666544433 2345555678888888888888888876 567888888888888888
Q ss_pred cCCC--CCCCCCCCCCcEEEeecCCCcccC-cccCCCCCCCEEecCCCCCCC--ccChhhhcCCCcccEEEccCCCCccc
Q 040332 584 KLLD--ISGIGDLKKLEFLCLRGCDIRQLP-IEVGELICLKLLDLRDCSKLE--VIPPHILSNLSHLEELNIGDNSFYHW 658 (1210)
Q Consensus 584 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~--~~p~~~l~~L~~L~~L~l~~n~~~~~ 658 (1210)
.+.. |..|+++++|++|++++|.+..+| ..++++++|++|++++| .+. .+|.. ++++++|++|++++|.+.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~-- 166 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQ-- 166 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCC--
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcce--
Confidence 8877 667888888888888888888776 57888888888888888 454 45665 588888888888888762
Q ss_pred cccccccCccccccCCCCC----EEEeeccCCCCCCCc
Q 040332 659 EVEVDGVKNASLNELKHLT----SLQLRIKDINCLPRG 692 (1210)
Q Consensus 659 ~~~~~~~~~~~l~~L~~L~----~L~l~~~~~~~~~~~ 692 (1210)
+..+..++.+++|+ .|++++|.+..++..
T Consensus 167 -----~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 167 -----TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp -----EECTTTTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred -----ecChhhhhhhhccccccceeeccCCCcceeCcc
Confidence 33444555555444 788888887766654
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.4e-32 Score=335.46 Aligned_cols=496 Identities=18% Similarity=0.191 Sum_probs=252.4
Q ss_pred cccchhhhcCCcceEEEecCcccccC-CccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCccc-CcccC
Q 040332 540 SIANNFFERMIQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQL-PIEVG 615 (1210)
Q Consensus 540 ~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~ 615 (1210)
.++...|.++++|++|++++|.+..+ |.+|.++++|++|++++|.+.. |..|+++++|++|++++|.+..+ |..++
T Consensus 47 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 47 TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence 34445567777777777777777754 6667777777777777777766 55677777777777777777776 45677
Q ss_pred CCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCC--EEEeeccCCCCCCCcc
Q 040332 616 ELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLT--SLQLRIKDINCLPRGL 693 (1210)
Q Consensus 616 ~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~--~L~l~~~~~~~~~~~~ 693 (1210)
++++|++|++++| .+..++...+..+++|++|++++|.+ .+..+..++.+++|+ .|++++|.+..++...
T Consensus 127 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 127 NQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAI-------HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp TCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCC-------CEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred cCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcc-------cccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 7777777777777 55554211134577777777777765 233455667777777 6677777666554432
Q ss_pred ccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEE
Q 040332 694 FFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLW 773 (1210)
Q Consensus 694 ~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~ 773 (1210)
.- ..+|+.|++.++ .........+. ...++.+.
T Consensus 199 ~~------------------------------------------~~~L~~L~l~~~--~~~~~~~~~l~---~~~l~~l~ 231 (606)
T 3t6q_A 199 FD------------------------------------------SAVFQSLNFGGT--QNLLVIFKGLK---NSTIQSLW 231 (606)
T ss_dssp TT------------------------------------------TCEEEEEECTTC--SCHHHHHHHTT---TCEEEEEE
T ss_pred hh------------------------------------------hccccccccCCc--hhHHHHhhhcc---ccchhhee
Confidence 00 123444444443 21111111111 11222333
Q ss_pred eeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEE
Q 040332 774 IEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQI 853 (1210)
Q Consensus 774 l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l 853 (1210)
+..+............+.. +.. .+|+.|+++++. +..+++ ..++.+++|++|++
T Consensus 232 ~~~~~~~~~~~i~~~~~~~-----------------------l~~-~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 232 LGTFEDMDDEDISPAVFEG-----------------------LCE-MSVESINLQKHY-FFNISS-NTFHCFSGLQELDL 285 (606)
T ss_dssp CCCCTTSCCCCCCGGGGGG-----------------------GGG-SEEEEEECTTCC-CSSCCT-TTTTTCTTCSEEEC
T ss_pred chhhccccccccChhHhch-----------------------hhc-CceeEEEeecCc-cCccCH-HHhccccCCCEEec
Confidence 3222211110000000000 000 145555555542 233322 22345556666666
Q ss_pred eccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCccccccccccccccc
Q 040332 854 WGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEK 933 (1210)
Q Consensus 854 ~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~ 933 (1210)
++|. +..+ +..+..+++|++|+++++ .+..++... +..+++|++|++++|.....++. ..
T Consensus 286 ~~n~-l~~l---------p~~l~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-------~~ 345 (606)
T 3t6q_A 286 TATH-LSEL---------PSGLVGLSTLKKLVLSAN-KFENLCQIS--ASNFPSLTHLSIKGNTKRLELGT-------GC 345 (606)
T ss_dssp TTSC-CSCC---------CSSCCSCTTCCEEECTTC-CCSBGGGGC--GGGCTTCSEEECCSCSSCCBCCS-------ST
T ss_pred cCCc-cCCC---------ChhhcccccCCEEECccC-CcCcCchhh--hhccCcCCEEECCCCCcccccch-------hh
Confidence 6554 4433 223444556666666553 233332211 33456666666665533222211 11
Q ss_pred ccccCCcceeeeccccccccc----cccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEcccccccee
Q 040332 934 GQVFPSLEELSVDVKHIAAIN----KCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESE 1009 (1210)
Q Consensus 934 ~~~~~sL~~L~l~~~~~~~~~----~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~ 1009 (1210)
...+++|+.|++++|.+.... ....+++|+.|+++.+.+.. ..+..+..+++|+.|+++ +|.
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~-~n~----- 411 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS--------LKTEAFKECPQLELLDLA-FTR----- 411 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE--------ECTTTTTTCTTCSEEECT-TCC-----
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc--------CCHHHhcCCccCCeEECC-CCc-----
Confidence 233556666666666554432 12355566666664444421 112234456666666665 222
Q ss_pred ecccccchhhhhhhccccCcccc-ccccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcce--ecchhH
Q 040332 1010 EKVENGMEVIIREANKCCDLKHI-LKQESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMK--VLTSSI 1086 (1210)
Q Consensus 1010 ~~~~~~~~~~l~~l~~~~~L~~~-~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~--l~~~~~ 1086 (1210)
+... ++..+..+++|+.|++++|......+..+..+++|++|++++|+ +.. ++....
T Consensus 412 -------------------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 471 (606)
T 3t6q_A 412 -------------------LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNS 471 (606)
T ss_dssp -------------------EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCG
T ss_pred -------------------CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchh
Confidence 1111 12224455666666666665433333334556666666666663 332 111233
Q ss_pred HhhhhhceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCcccc-
Q 040332 1087 AKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIF- 1165 (1210)
Q Consensus 1087 ~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~l- 1165 (1210)
+..+++|+.|++++|. ++.++. ..+..+++|+.|+++++. ++.++..... .+++| .|++++|. ++.+
T Consensus 472 ~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~-~l~~L-~L~L~~N~-l~~~~ 539 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCD-LSSIDQ-------HAFTSLKMMNHVDLSHNR-LTSSSIEALS-HLKGI-YLNLASNH-ISIIL 539 (606)
T ss_dssp GGGCTTCCEEECTTSC-CCEECT-------TTTTTCTTCCEEECCSSC-CCGGGGGGGT-TCCSC-EEECCSSC-CCCCC
T ss_pred hccCCCccEEECCCCc-cCccCh-------hhhccccCCCEEECCCCc-cCcCChhHhC-ccccc-EEECcCCc-ccccC
Confidence 5566666666666654 222211 234556666666666653 4433322222 34666 66666653 3333
Q ss_pred CCCCcCCCceeEEEecc
Q 040332 1166 SGGELSTPKLLKVQLDE 1182 (1210)
Q Consensus 1166 p~~~~~~~~L~~l~i~~ 1182 (1210)
|..+..+++|+.+++++
T Consensus 540 ~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQ 556 (606)
T ss_dssp GGGHHHHHTSSEEECTT
T ss_pred HhhcccCCCCCEEeCCC
Confidence 33345566667776665
No 10
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.6e-32 Score=331.66 Aligned_cols=298 Identities=20% Similarity=0.296 Sum_probs=225.0
Q ss_pred cCcccccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhc-cCCC-CeEEEEEecCCcCHHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKS-DKIF-DQVVFAEVSQSQDIRKIQGEI 226 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i 226 (1210)
.....|+||+.++++|.++|. .++.++|+|+||||+||||||++++++.+. ..+| +.++|++++.. +...++..+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 345679999999999999997 456799999999999999999999987644 4569 58999999876 333444433
Q ss_pred ---HHHhCCCccc--C--Ccccc-----------cCccEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhhh
Q 040332 227 ---ADKLGLKFHE--E--SEPGR-----------EEKKILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDVLSR 288 (1210)
Q Consensus 227 ---~~~l~~~~~~--~--~~~~~-----------~~kr~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~ 288 (1210)
+..++..... . ..... ..+++||||||||+...++.+ .+|++||||||+..++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHh
Confidence 4455421110 0 00000 338999999999998766643 358999999999998653
Q ss_pred cCCCcceeee---cCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 040332 289 KMDSQQNFAV---GILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALRNNKSLFDWKDALEQLR 365 (1210)
Q Consensus 289 ~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~ 365 (1210)
.. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+|+||+.+|+.++... ..|..+++.+.
T Consensus 273 ~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~ 346 (591)
T 1z6t_A 273 VM--GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQ 346 (591)
T ss_dssp CC--SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHH
T ss_pred cC--CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHH
Confidence 22 334555 5899999999999998742 223345789999999999999999999998653 37999988886
Q ss_pred CCCCCCc----cccchhHHHHHHhhhcCCCccchhhhHhhhccCc---cccHHHHHHHHhhcCcCCCCCcHHHHHHHHHH
Q 040332 366 RPPLKNF----MNIQPNAHKAIKLSYDNLGGEELKNVFLLIGYTV---IESIDDLLMYGMGLGLFQGVSKMEEARARVHT 438 (1210)
Q Consensus 366 ~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp---~~~~~~Li~~w~a~g~~~~~~~~e~~~~~~~~ 438 (1210)
......+ ......+..++.+||+.||+ +.|.||++||+|| .|+.+.+...|.++ .++ +.+
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~~~----~~~ 413 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME--------TEE----VED 413 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC--------HHH----HHH
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC--------HHH----HHH
Confidence 5442221 12246899999999999998 5899999999998 48889999999543 122 345
Q ss_pred HHHHHHhhcceeecccCCCCeEEhhHHHHHHHHHHHc
Q 040332 439 LVHKLKASCMLLDHLSKNEEFFSMHDVVRDVAISIAS 475 (1210)
Q Consensus 439 ~~~~L~~~~ll~~~~~~~~~~~~mHdlv~~~~~~~~~ 475 (1210)
++++|++++|++....+...+|+||++||++++....
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 7999999999986544434589999999999998743
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=1.6e-31 Score=331.12 Aligned_cols=512 Identities=18% Similarity=0.146 Sum_probs=296.3
Q ss_pred ccccceeEEEecccccccCC--CcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccC-CccccCCCC
Q 040332 498 SAVKLYTSIVLRDVKTNLLP--ELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSL-PSSLVLLSN 574 (1210)
Q Consensus 498 ~~~~~~~~l~l~~~~~~~l~--~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~ 574 (1210)
...+.++++.+.++.+..++ .+.++++|+.|.+..+. ...+++..|.++++|++|++++|.+..+ |.+|+++++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 45678999999999997776 47899999999666543 3356677789999999999999999987 889999999
Q ss_pred CcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCc--ccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCccc----
Q 040332 575 LRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIR--QLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLE---- 646 (1210)
Q Consensus 575 L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~---- 646 (1210)
|++|++++|.+.. +..++++.+|++|++++|.+. .+|..++++++|++|++++| .+..+++..++.+++|+
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCC
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccc
Confidence 9999999999988 467999999999999999998 57999999999999999999 77777765567766665
Q ss_pred EEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCC--CCCc-cccccCceeEEEEcccccccCcCCcceEEec
Q 040332 647 ELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC--LPRG-LFFEKLERYRILIGDFWNWKYNICSRDFRIG 723 (1210)
Q Consensus 647 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~--~~~~-~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~ 723 (1210)
+|++++|.+. ...+..+ ...+|+.|++++|.+.. .+.. ..+.+++.+.+..+.+....
T Consensus 185 ~L~l~~n~l~-------~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~----------- 245 (606)
T 3vq2_A 185 SLDMSLNPID-------FIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER----------- 245 (606)
T ss_dssp EEECTTCCCC-------EECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC-----------
T ss_pred eeeccCCCcc-------eeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC-----------
Confidence 8999999873 2222333 33489999999887642 1111 12333333333222211100
Q ss_pred CCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhcc
Q 040332 724 LSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNE 803 (1210)
Q Consensus 724 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~ 803 (1210)
.+.. ........+. .-+++.+.+..+..+....+
T Consensus 246 ----------------~l~~---------~~~~~~~~l~---~l~l~~l~l~~~~~~~~~~~------------------ 279 (606)
T 3vq2_A 246 ----------------NLEI---------FEPSIMEGLC---DVTIDEFRLTYTNDFSDDIV------------------ 279 (606)
T ss_dssp ----------------CCSC---------CCGGGGTTGG---GSEEEEEEECCCTTCCGGGG------------------
T ss_pred ----------------cccc---------cChHHhhhhh---hccHhheecccccccccccc------------------
Confidence 0000 0000000000 11334444433222211110
Q ss_pred ccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccce
Q 040332 804 IILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQY 883 (1210)
Q Consensus 804 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~ 883 (1210)
. +..+++|+.|+++++.. ..++ .+..+++|++|++++|. ++.++ .+ .+++|++
T Consensus 280 ----------~-~~~l~~L~~L~l~~~~~-~~l~---~l~~~~~L~~L~l~~n~-l~~lp----------~~-~l~~L~~ 332 (606)
T 3vq2_A 280 ----------K-FHCLANVSAMSLAGVSI-KYLE---DVPKHFKWQSLSIIRCQ-LKQFP----------TL-DLPFLKS 332 (606)
T ss_dssp ----------S-CGGGTTCSEEEEESCCC-CCCC---CCCTTCCCSEEEEESCC-CSSCC----------CC-CCSSCCE
T ss_pred ----------c-cccCCCCCEEEecCccc-hhhh---hccccccCCEEEccccc-Ccccc----------cC-CCCccce
Confidence 0 22334555555555432 2332 13445555555555554 23331 11 3555555
Q ss_pred eecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeeccccccccc-cccccccc
Q 040332 884 LEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAIN-KCQLFRED 962 (1210)
Q Consensus 884 L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~-~~~~l~~L 962 (1210)
|+++++..+..++ ...+++|++|++++| .+...+. .+.....+++|+.|++++|.+...+ ....+++|
T Consensus 333 L~l~~n~~~~~~~-----~~~l~~L~~L~ls~n-~l~~~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L 401 (606)
T 3vq2_A 333 LTLTMNKGSISFK-----KVALPSLSYLDLSRN-ALSFSGC-----CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401 (606)
T ss_dssp EEEESCSSCEECC-----CCCCTTCCEEECCSS-CEEEEEE-----CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTC
T ss_pred eeccCCcCccchh-----hccCCCCCEEECcCC-ccCCCcc-----hhhhhccCCcccEeECCCCccccchhhccCCCCC
Confidence 5555544433331 223555555555555 2222100 0111223455555555555544332 12245555
Q ss_pred eEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhhhccccCccccccccccCcCc
Q 040332 963 LLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILKQESSNMNN 1042 (1210)
Q Consensus 963 ~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~~~l~~l~~ 1042 (1210)
+.|+++.+.+... .+...+..+++|+.|+++ +| .+....+..+..+++
T Consensus 402 ~~L~l~~n~l~~~-------~~~~~~~~l~~L~~L~l~-~n------------------------~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 402 QHLDFQHSTLKRV-------TEFSAFLSLEKLLYLDIS-YT------------------------NTKIDFDGIFLGLTS 449 (606)
T ss_dssp CEEECTTSEEEST-------TTTTTTTTCTTCCEEECT-TS------------------------CCEECCTTTTTTCTT
T ss_pred CeeECCCCccCCc-------cChhhhhccccCCEEECc-CC------------------------CCCccchhhhcCCCC
Confidence 5555544444211 111234456666777666 22 233333344556667
Q ss_pred ccEEEEeccccccc-cCCCCccccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhccccccccccc
Q 040332 1043 LVILHVIRCNNLIN-LVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIV 1121 (1210)
Q Consensus 1043 L~~L~l~~c~~L~~-l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~ 1121 (1210)
|++|++++|..... ++..+..+++|++|++++| ++..+++. .+..+++|++|++++|+ ++.++. ..+..
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~~~ 519 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMSHNN-LLFLDS-------SHYNQ 519 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CSCEEG-------GGTTT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChh-hhcccccCCEEECCCCc-CCCcCH-------HHccC
Confidence 77777776654432 3444556777777777777 56665333 34667777777777764 332211 23556
Q ss_pred ccccccccccccccccccccCCccccCC-cccEEeeccCCC
Q 040332 1122 FSELKDLELCELKSMTSFCSGHCAFKFP-SLERILVNDCPS 1161 (1210)
Q Consensus 1122 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~-sL~~L~i~~C~~ 1161 (1210)
+++|+.|++++|. ++++|.... .++ +|+.|+++++|-
T Consensus 520 l~~L~~L~l~~N~-l~~~p~~~~--~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 520 LYSLSTLDCSFNR-IETSKGILQ--HFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CTTCCEEECTTSC-CCCEESCGG--GSCTTCCEEECCSCCC
T ss_pred CCcCCEEECCCCc-CcccCHhHh--hhcccCcEEEccCCCc
Confidence 6777777776653 666665522 234 477777766553
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=9.5e-30 Score=315.29 Aligned_cols=486 Identities=15% Similarity=0.146 Sum_probs=333.0
Q ss_pred cceEEEecCcccccC-CccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEecC
Q 040332 551 QVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDLR 626 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~ 626 (1210)
.+++|++++|.+..+ |.+|.++++|++|++++|.+.. |..|+++++|++|++++|.+..+ |..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 678888888888876 5678888888888888888776 66688888888888888887766 5578888888888888
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEEc
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILIG 706 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~ 706 (1210)
+| .+..+++..++++++|++|++++|.+. +.....+..+++|+.|++++|.+..++.
T Consensus 114 ~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------- 170 (606)
T 3t6q_A 114 QT-GISSIDFIPLHNQKTLESLYLGSNHIS-------SIKLPKGFPTEKLKVLDFQNNAIHYLSK--------------- 170 (606)
T ss_dssp TS-CCSCGGGSCCTTCTTCCEEECCSSCCC-------CCCCCTTCCCTTCCEEECCSSCCCEECH---------------
T ss_pred cc-CcccCCcchhccCCcccEEECCCCccc-------ccCcccccCCcccCEEEcccCcccccCh---------------
Confidence 87 666664444688888888888887662 2222334447888888888777664432
Q ss_pred ccccccCcCCcceEEecCCcccchHHHHHHHhcccc--EEeecccccccchhhhhhhhhcccccCcEEEeeCCccccccc
Q 040332 707 DFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIE--HLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDAL 784 (1210)
Q Consensus 707 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~ 784 (1210)
..+..+++|+ .|+++++ ....+...... ..+|++|++++|..+...
T Consensus 171 --------------------------~~~~~l~~L~~l~L~l~~n---~l~~~~~~~~~--~~~L~~L~l~~~~~~~~~- 218 (606)
T 3t6q_A 171 --------------------------EDMSSLQQATNLSLNLNGN---DIAGIEPGAFD--SAVFQSLNFGGTQNLLVI- 218 (606)
T ss_dssp --------------------------HHHHTTTTCCSEEEECTTC---CCCEECTTTTT--TCEEEEEECTTCSCHHHH-
T ss_pred --------------------------hhhhhhcccceeEEecCCC---ccCccChhHhh--hccccccccCCchhHHHH-
Confidence 2233355666 6666664 33333333222 367888888887532111
Q ss_pred CCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccc--cccchhhhhcc--cccEEEEecccccc
Q 040332 785 NSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGC--LFSSSIVSSFV--RLQHLQIWGCPVLE 860 (1210)
Q Consensus 785 ~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~l~--~L~~L~l~~~~~l~ 860 (1210)
+..+.. ..+..+.+..+..... +.. ..+..+. +|+.|+++++. +.
T Consensus 219 ---------------~~~l~~--------------~~l~~l~~~~~~~~~~~~i~~-~~~~~l~~~~L~~L~l~~n~-l~ 267 (606)
T 3t6q_A 219 ---------------FKGLKN--------------STIQSLWLGTFEDMDDEDISP-AVFEGLCEMSVESINLQKHY-FF 267 (606)
T ss_dssp ---------------HHHTTT--------------CEEEEEECCCCTTSCCCCCCG-GGGGGGGGSEEEEEECTTCC-CS
T ss_pred ---------------hhhccc--------------cchhheechhhccccccccCh-hHhchhhcCceeEEEeecCc-cC
Confidence 111100 1233333333332221 111 1123333 79999999886 66
Q ss_pred ceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCc
Q 040332 861 EIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSL 940 (1210)
Q Consensus 861 ~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL 940 (1210)
.+. +..+..+++|++|+++++ .++.++.. +..+++|++|++++|. +...+ +.....+++|
T Consensus 268 ~~~--------~~~~~~l~~L~~L~l~~n-~l~~lp~~---l~~l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L 327 (606)
T 3t6q_A 268 NIS--------SNTFHCFSGLQELDLTAT-HLSELPSG---LVGLSTLKKLVLSANK-FENLC-------QISASNFPSL 327 (606)
T ss_dssp SCC--------TTTTTTCTTCSEEECTTS-CCSCCCSS---CCSCTTCCEEECTTCC-CSBGG-------GGCGGGCTTC
T ss_pred ccC--------HHHhccccCCCEEeccCC-ccCCCChh---hcccccCCEEECccCC-cCcCc-------hhhhhccCcC
Confidence 552 345677999999999995 67777765 5678999999999984 44431 1234568999
Q ss_pred ceeeecccccccccc---ccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccccch
Q 040332 941 EELSVDVKHIAAINK---CQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGME 1017 (1210)
Q Consensus 941 ~~L~l~~~~~~~~~~---~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~ 1017 (1210)
+.|++++|.+....+ ...+++|+.|+++.+.++... ..+..+..+++|++|+++ +
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~-~--------------- 385 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD------CCNLQLRNLSHLQSLNLS-Y--------------- 385 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE------ESTTTTTTCTTCCEEECC-S---------------
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc------CcchhcccCCCCCEEECC-C---------------
Confidence 999999998663322 447899999999777775211 013346789999999998 2
Q ss_pred hhhhhhccccCccccccccccCcCcccEEEEeccccccccCCC-CccccCccEEEEccCCCcceecchhHHhhhhhceEE
Q 040332 1018 VIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNLINLVPS-SLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEM 1096 (1210)
Q Consensus 1018 ~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~-~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L 1096 (1210)
+.+..+.+..+..+++|+.|++++|......++. +..+++|+.|++++| .+...++ ..+..+++|++|
T Consensus 386 ---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L 454 (606)
T 3t6q_A 386 ---------NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHL 454 (606)
T ss_dssp ---------CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEE
T ss_pred ---------CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEE
Confidence 3455556666788899999999998755444433 668999999999999 5666544 346789999999
Q ss_pred eEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCccccCCCCcCCCcee
Q 040332 1097 RVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSGGELSTPKLL 1176 (1210)
Q Consensus 1097 ~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~~~L~ 1176 (1210)
++++|+-....+. ....+..+++|+.|++++| +++.++..... .+++|++|++++|.-....|..+..+++|
T Consensus 455 ~L~~n~l~~~~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 455 NLQGNHFPKGNIQ-----KTNSLQTLGRLEILVLSFC-DLSSIDQHAFT-SLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp ECTTCBCGGGEEC-----SSCGGGGCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred ECCCCCCCccccc-----cchhhccCCCccEEECCCC-ccCccChhhhc-cccCCCEEECCCCccCcCChhHhCccccc-
Confidence 9999874221110 0124678999999999997 56666543332 46999999999986555567788889999
Q ss_pred EEEeccc
Q 040332 1177 KVQLDEF 1183 (1210)
Q Consensus 1177 ~l~i~~C 1183 (1210)
.|++++|
T Consensus 527 ~L~L~~N 533 (606)
T 3t6q_A 527 YLNLASN 533 (606)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 9999984
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=8.3e-29 Score=316.77 Aligned_cols=389 Identities=19% Similarity=0.229 Sum_probs=219.9
Q ss_pred cccceeEEEecccccccCC--CcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccC-CccccCCCCC
Q 040332 499 AVKLYTSIVLRDVKTNLLP--ELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSL-PSSLVLLSNL 575 (1210)
Q Consensus 499 ~~~~~~~l~l~~~~~~~l~--~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L 575 (1210)
.+..++++.++++.+..+. .+.++++|+.|.+..+. ....++...|.++++|++|+|++|.+..+ |+.|+++++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~--~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY--TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC--CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC--CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 5566777777777775543 45667777777544432 23345455667777777777777777655 6677777777
Q ss_pred cEEEecCccCCC--CCC--CCCCCCCcEEEeecCCCcccC--cccCCCCCCCEEecCCCCCCCccChhhhcCC--CcccE
Q 040332 576 RTLSLYYCKLLD--ISG--IGDLKKLEFLCLRGCDIRQLP--IEVGELICLKLLDLRDCSKLEVIPPHILSNL--SHLEE 647 (1210)
Q Consensus 576 ~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L--~~L~~ 647 (1210)
++|+|++|.+.. |.. ++++++|++|++++|.+..++ ..++++++|++|++++| .+..+.+..++.+ ++|+.
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHHCSSCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccCCccce
Confidence 777777777665 443 777777777777777766552 35677777777777776 4444333334555 67777
Q ss_pred EEccCCCCccccccccccCccccccCCC------CCEEEeeccCCCCCCCccccccCceeEEEEcccccccCcCCcceEE
Q 040332 648 LNIGDNSFYHWEVEVDGVKNASLNELKH------LTSLQLRIKDINCLPRGLFFEKLERYRILIGDFWNWKYNICSRDFR 721 (1210)
Q Consensus 648 L~l~~n~~~~~~~~~~~~~~~~l~~L~~------L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~ 721 (1210)
|++++|.+. +..+..++.+.+ |+.|++++|.+...........+.
T Consensus 179 L~L~~n~l~-------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~---------------------- 229 (844)
T 3j0a_A 179 FSLAANSLY-------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS---------------------- 229 (844)
T ss_dssp CEECCSBSC-------CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC----------------------
T ss_pred EECCCCccc-------cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC----------------------
Confidence 777766552 223333333333 677777766554221111000000
Q ss_pred ecCCcccchHHHHHHHhccccEEeeccc------ccccchhhhh-hhhhcccccCcEEEeeCCcccccccCCcccccchh
Q 040332 722 IGLSKRICLKDVLIVQLQGIEHLGLYGL------QEHDVESFAN-ELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEE 794 (1210)
Q Consensus 722 l~~~~~~~~~~~~~~~l~~L~~L~l~~~------~~~~~~~~~~-~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 794 (1210)
...+..|.+... .......... .+.....++|+.|++++|......
T Consensus 230 ----------------~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~----------- 282 (844)
T 3j0a_A 230 ----------------KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN----------- 282 (844)
T ss_dssp ----------------SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC-----------
T ss_pred ----------------cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC-----------
Confidence 011222222210 0001111110 111111367777777776432211
Q ss_pred hHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccc
Q 040332 795 STNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKN 874 (1210)
Q Consensus 795 ~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 874 (1210)
+..+..+++|+.|+++++.. ..+++ ..++.+++|++|++++|. +..+. +..
T Consensus 283 ------------------~~~~~~l~~L~~L~L~~n~i-~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~--------~~~ 333 (844)
T 3j0a_A 283 ------------------SRVFETLKDLKVLNLAYNKI-NKIAD-EAFYGLDNLQVLNLSYNL-LGELY--------SSN 333 (844)
T ss_dssp ------------------SCCSSSCCCCCEEEEESCCC-CEECT-TTTTTCSSCCEEEEESCC-CSCCC--------SCS
T ss_pred ------------------hhhhhcCCCCCEEECCCCcC-CCCCh-HHhcCCCCCCEEECCCCC-CCccC--------HHH
Confidence 23344556777777777643 33322 234667778888887775 44431 234
Q ss_pred cccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeeccccccccc
Q 040332 875 IVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAIN 954 (1210)
Q Consensus 875 ~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~ 954 (1210)
+..+++|++|+++++ .+..++... +..+++|+.|++++| .++.+ ..+++|+.|++++|.+...+
T Consensus 334 ~~~l~~L~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~Ls~N-~l~~i------------~~~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKN-HIAIIQDQT--FKFLEKLQTLDLRDN-ALTTI------------HFIPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp CSSCTTCCEEECCSC-CCCCCCSSC--SCSCCCCCEEEEETC-CSCCC------------SSCCSCSEEEEESCCCCCCC
T ss_pred hcCCCCCCEEECCCC-CCCccChhh--hcCCCCCCEEECCCC-CCCcc------------cCCCCcchhccCCCCccccc
Confidence 556777788887774 555555432 455777788887776 34432 22677777777777766543
Q ss_pred cccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEE
Q 040332 955 KCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIV 1000 (1210)
Q Consensus 955 ~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~ 1000 (1210)
. ...+++.|+++.|.++.. .....+..+++|+.|+++
T Consensus 398 ~--~~~~l~~L~ls~N~l~~l-------~~~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 398 K--INLTANLIHLSENRLENL-------DILYFLLRVPHLQILILN 434 (844)
T ss_dssp C--CCTTCCEEECCSCCCCSS-------TTHHHHTTCTTCCEEEEE
T ss_pred c--cccccceeecccCccccC-------chhhhhhcCCccceeeCC
Confidence 3 245677777766666421 123345567777777777
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=301.61 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=134.4
Q ss_pred cCCcceeeeccccccccccccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccccc
Q 040332 937 FPSLEELSVDVKHIAAINKCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGM 1016 (1210)
Q Consensus 937 ~~sL~~L~l~~~~~~~~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~ 1016 (1210)
+++|+.|++++|......+...+++|+.|+++.+.++... ..+..+..+++|+.|+++ +|
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~~~L~~L~l~-~n------------- 383 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG------CCSQSDFGTTSLKYLDLS-FN------------- 383 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEE------EEEHHHHTCSCCCEEECC-SC-------------
T ss_pred ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccc------cccccccccCccCEEECC-CC-------------
Confidence 4555555555555444444445566666666545443100 113457788899999988 33
Q ss_pred hhhhhhhccccCccccccccccCcCcccEEEEeccccccccC-CCCccccCccEEEEccCCCcceecchhHHhhhhhceE
Q 040332 1017 EVIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNLINLV-PSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKE 1095 (1210)
Q Consensus 1017 ~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~-~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~ 1095 (1210)
.+..+++. +..+++|+.|++++|......+ .....+++|++|++++| ++....+ ..+..+++|++
T Consensus 384 -----------~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~ 449 (570)
T 2z63_A 384 -----------GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEV 449 (570)
T ss_dssp -----------SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCE
T ss_pred -----------cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC-cccccch-hhhhcCCcCcE
Confidence 33344444 6677889999998876443322 24568899999999998 5666544 34678899999
Q ss_pred EeEcccccHH-HHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCccccCC-CCcCCC
Q 040332 1096 MRVSECNMIT-EIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSG-GELSTP 1173 (1210)
Q Consensus 1096 L~i~~c~~l~-~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~-~~~~~~ 1173 (1210)
|++++|.... .+| ..+..+++|+.|++++|. ++.++..... .+++|++|++++| +++.+|. .+..++
T Consensus 450 L~l~~n~l~~~~~p--------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 450 LKMAGNSFQENFLP--------DIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SLSSLQVLNMASN-QLKSVPDGIFDRLT 518 (570)
T ss_dssp EECTTCEEGGGEEC--------SCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred EECcCCcCccccch--------hhhhcccCCCEEECCCCc-cccCChhhhh-cccCCCEEeCCCC-cCCCCCHHHhhccc
Confidence 9999987431 233 357788999999999874 6666332222 4589999999987 5666664 467889
Q ss_pred ceeEEEeccc
Q 040332 1174 KLLKVQLDEF 1183 (1210)
Q Consensus 1174 ~L~~l~i~~C 1183 (1210)
+|++|+++++
T Consensus 519 ~L~~L~l~~N 528 (570)
T 2z63_A 519 SLQKIWLHTN 528 (570)
T ss_dssp TCCEEECCSS
T ss_pred CCcEEEecCC
Confidence 9999999873
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=9.8e-28 Score=306.82 Aligned_cols=500 Identities=15% Similarity=0.117 Sum_probs=323.1
Q ss_pred CCcceEEEecCcccccC-CccccCCCCCcEEEecCccCCC---CCCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEE
Q 040332 549 MIQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD---ISGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLL 623 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L 623 (1210)
.+.|++|||++|.+..+ |.++.++++|++|+|++|.... |..|+++++|++|++++|.+..+ |..++++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 46889999999999875 7788999999999999995544 66799999999999999998876 7789999999999
Q ss_pred ecCCCCCCCc-cChh-hhcCCCcccEEEccCCCCcccccccccc-CccccccCCCCCEEEeeccCCCCCCCccccccCce
Q 040332 624 DLRDCSKLEV-IPPH-ILSNLSHLEELNIGDNSFYHWEVEVDGV-KNASLNELKHLTSLQLRIKDINCLPRGLFFEKLER 700 (1210)
Q Consensus 624 ~l~~~~~~~~-~p~~-~l~~L~~L~~L~l~~n~~~~~~~~~~~~-~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~ 700 (1210)
++++| .+.. +|.. .++++++|++|++++|.+. +. .+..++++++|+.|++++|.+..+....
T Consensus 103 ~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~-------~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~------- 167 (844)
T 3j0a_A 103 RLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIR-------SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE------- 167 (844)
T ss_dssp ECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCC-------CCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-------
T ss_pred eCcCC-CCCcccccCccccccCCCCEEECCCCccc-------ccccchhHhhCCCCCEEECCCCcCCeeCHHH-------
Confidence 99998 4443 4433 3688999999999988762 22 2357889999999999988876543321
Q ss_pred eEEEEcccccccCcCCcceEEecCCcccchHHHHHHHh--ccccEEeecccccccchhhhhhhhh----cccccCcEEEe
Q 040332 701 YRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQL--QGIEHLGLYGLQEHDVESFANELVK----VGSSQLKHLWI 774 (1210)
Q Consensus 701 l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~l~~----~~~~~L~~L~l 774 (1210)
+..+ ++|+.|.++++.... ..+..+.. ....+|+.|++
T Consensus 168 ----------------------------------l~~l~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~~L~~L~L 211 (844)
T 3j0a_A 168 ----------------------------------LEPLQGKTLSFFSLAANSLYS--RVSVDWGKCMNPFRNMVLEILDV 211 (844)
T ss_dssp ----------------------------------GHHHHHCSSCCCEECCSBSCC--CCCCCCCSSSCTTTTCCBSEEBC
T ss_pred ----------------------------------cccccCCccceEECCCCcccc--ccccchhhcCCccccCceeEEec
Confidence 0112 567777877752111 11111100 01124999999
Q ss_pred eCCcccccccCCcccc---cchhhHHHHhhcc--------ccchhhhcccccccc--cCCcceEEeecCCCccccccchh
Q 040332 775 EGCHEAHDALNSAESK---RQEESTNDMRSNE--------IILEDRINISNILFN--EKNLTRLTVCNCRNLGCLFSSSI 841 (1210)
Q Consensus 775 ~~~~~~~~~~~~~~~~---~~L~~L~~~l~~~--------~~l~~~~~~~~~~~~--l~~L~~L~l~~c~~l~~l~~~~~ 841 (1210)
++|......+..+... +.+..+. +... ..+.... ...+.. .++|+.|+++++... .+++ ..
T Consensus 212 s~n~l~~~~~~~~~~~l~~~~l~~L~--l~~~~~~~~~~~~~l~~~~--~~~f~~l~~~~L~~L~Ls~n~l~-~~~~-~~ 285 (844)
T 3j0a_A 212 SGNGWTVDITGNFSNAISKSQAFSLI--LAHHIMGAGFGFHNIKDPD--QNTFAGLARSSVRHLDLSHGFVF-SLNS-RV 285 (844)
T ss_dssp SSCCSSTTTTSGGGGTSCSCCBSEEE--CCSSCCBCSSSCSSSTTGG--GTTTTTTTTSCCCEEECTTCCCC-EECS-CC
T ss_pred CCCcCchhHHHHHHhhcCccccccee--cccccccccccccccCCCC--hhhhhccccCCccEEECCCCccc-ccCh-hh
Confidence 9885443332221111 1122222 1100 0111111 111222 267888888776433 3322 23
Q ss_pred hhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCccc
Q 040332 842 VSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMV 921 (1210)
Q Consensus 842 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~ 921 (1210)
++.+++|+.|++++|. +..+. +..+..+++|++|+++++ .+..+.... +..+++|+.|++++| .+..
T Consensus 286 ~~~l~~L~~L~L~~n~-i~~~~--------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~i~~ 352 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNK-INKIA--------DEAFYGLDNLQVLNLSYN-LLGELYSSN--FYGLPKVAYIDLQKN-HIAI 352 (844)
T ss_dssp SSSCCCCCEEEEESCC-CCEEC--------TTTTTTCSSCCEEEEESC-CCSCCCSCS--CSSCTTCCEEECCSC-CCCC
T ss_pred hhcCCCCCEEECCCCc-CCCCC--------hHHhcCCCCCCEEECCCC-CCCccCHHH--hcCCCCCCEEECCCC-CCCc
Confidence 4677888888888776 55442 234566778888888874 455543322 456778888888877 4444
Q ss_pred ccccccccccccccccCCcceeeeccccccccccccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEc
Q 040332 922 KYKRITNDLMEKGQVFPSLEELSVDVKHIAAINKCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVG 1001 (1210)
Q Consensus 922 ~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~ 1001 (1210)
++. .....+++|+.|++++|.+..... +++|+.|.++.|+++..+. ...+++.|+++
T Consensus 353 ~~~-------~~~~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~~l~~------------~~~~l~~L~ls- 409 (844)
T 3j0a_A 353 IQD-------QTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPK------------INLTANLIHLS- 409 (844)
T ss_dssp CCS-------SCSCSCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCCCCCC------------CCTTCCEEECC-
T ss_pred cCh-------hhhcCCCCCCEEECCCCCCCcccC---CCCcchhccCCCCcccccc------------cccccceeecc-
Confidence 321 123446788888888877665433 6677777776666642221 13567777776
Q ss_pred cccccceeecccccchhhhhhhccccCcccccc-ccccCcCcccEEEEeccccccccCCC--CccccCccEEEEccCCCc
Q 040332 1002 ECYVGESEEKVENGMEVIIREANKCCDLKHILK-QESSNMNNLVILHVIRCNNLINLVPS--SLSFQNLTTLKVSYCKGL 1078 (1210)
Q Consensus 1002 ~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~-~~l~~l~~L~~L~l~~c~~L~~l~~~--~~~l~~L~~L~i~~c~~L 1078 (1210)
. +.+..+.. ..+..+++|+.|++++|.. +..++. ...+++|+.|++++| .+
T Consensus 410 ~------------------------N~l~~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~L~~L~Ls~N-~l 463 (844)
T 3j0a_A 410 E------------------------NRLENLDILYFLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGEN-ML 463 (844)
T ss_dssp S------------------------CCCCSSTTHHHHTTCTTCCEEEEESCCC-CCCCSSSSSCSCTTCCBCEEESC-CC
T ss_pred c------------------------CccccCchhhhhhcCCccceeeCCCCcc-cccccccccccCCccccccCCCC-cc
Confidence 2 22332211 1134678999999999864 333222 346899999999998 56
Q ss_pred ceecc----hhHHhhhhhceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEE
Q 040332 1079 MKVLT----SSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERI 1154 (1210)
Q Consensus 1079 ~~l~~----~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L 1154 (1210)
...++ ...+..+++|+.|++++|. ++.++. ..+..+++|+.|+++++ +++.++..... ++|+.|
T Consensus 464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~---~~L~~L 531 (844)
T 3j0a_A 464 QLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPP-------GVFSHLTALRGLSLNSN-RLTVLSHNDLP---ANLEIL 531 (844)
T ss_dssp SSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCT-------TSSSSCCSCSEEEEESC-CCSSCCCCCCC---SCCCEE
T ss_pred ccccccccchhhhcCcccccEEECCCCc-ccccCh-------hHccchhhhheeECCCC-CCCccChhhhh---ccccEE
Confidence 53321 1346778999999999974 666652 24678999999999985 78998876554 899999
Q ss_pred eeccCCCccccCCCCcCCCceeEEEecc
Q 040332 1155 LVNDCPSMKIFSGGELSTPKLLKVQLDE 1182 (1210)
Q Consensus 1155 ~i~~C~~l~~lp~~~~~~~~L~~l~i~~ 1182 (1210)
+++++ ++..++... .++|+.+++.+
T Consensus 532 ~Ls~N-~l~~~~~~~--~~~L~~l~l~~ 556 (844)
T 3j0a_A 532 DISRN-QLLAPNPDV--FVSLSVLDITH 556 (844)
T ss_dssp EEEEE-CCCCCCSCC--CSSCCEEEEEE
T ss_pred ECCCC-cCCCCChhH--hCCcCEEEecC
Confidence 99995 566655433 45899999976
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=301.07 Aligned_cols=465 Identities=18% Similarity=0.197 Sum_probs=249.5
Q ss_pred ccchhhhcCCcceEEEecCcccccCC-ccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCC
Q 040332 541 IANNFFERMIQVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGE 616 (1210)
Q Consensus 541 ~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~ 616 (1210)
++...|.+++.|++|++++|.+..++ ..+.++++|++|++++|.+.. +..|+++++|++|++++|.+..+|. .+++
T Consensus 43 ~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 122 (570)
T 2z63_A 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122 (570)
T ss_dssp ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTT
T ss_pred cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccc
Confidence 44445677788888888888777664 457778888888888887776 4567888888888888887777765 5778
Q ss_pred CCCCCEEecCCCCCCCc--cChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCC----CEEEeeccCCCCCC
Q 040332 617 LICLKLLDLRDCSKLEV--IPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHL----TSLQLRIKDINCLP 690 (1210)
Q Consensus 617 l~~L~~L~l~~~~~~~~--~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L----~~L~l~~~~~~~~~ 690 (1210)
+++|++|++++| .+.. +|.. ++++++|++|++++|.+ .+..+..++.+++| ..|++++|.+..++
T Consensus 123 l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 123 LKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKI-------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp CTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCC-------CEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred cccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCcc-------ceecHHHccchhccchhhhhcccCCCCceecC
Confidence 888888888877 4443 4555 57788888888887765 22334556666666 67777777776555
Q ss_pred Ccc-ccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccC
Q 040332 691 RGL-FFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQL 769 (1210)
Q Consensus 691 ~~~-~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L 769 (1210)
... ...+ |+.|++.+.. .....+...+. .++++
T Consensus 194 ~~~~~~~~-------------------------------------------L~~L~l~~n~-~~~~~~~~~~~--~l~~l 227 (570)
T 2z63_A 194 PGAFKEIR-------------------------------------------LHKLTLRNNF-DSLNVMKTCIQ--GLAGL 227 (570)
T ss_dssp TTTTTTCE-------------------------------------------EEEEEEESCC-SCTTHHHHHHH--TTTTC
T ss_pred HHHhccCc-------------------------------------------ceeEeccccc-ccccchhhhhc--Ccccc
Confidence 432 1112 3333333320 01111111111 13333
Q ss_pred cEEEeeCC--ccc---ccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhh
Q 040332 770 KHLWIEGC--HEA---HDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSS 844 (1210)
Q Consensus 770 ~~L~l~~~--~~~---~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 844 (1210)
+.+.+... ... ..+.. ..+..+. . -.++.+.+.++..+....+ ..++.
T Consensus 228 ~~~~l~~~~~~~~~~l~~~~~--~~~~~l~-----------------------~-l~l~~l~l~~~~~~~~~~~-~~~~~ 280 (570)
T 2z63_A 228 EVHRLVLGEFRNEGNLEKFDK--SALEGLC-----------------------N-LTIEEFRLAYLDYYLDDII-DLFNC 280 (570)
T ss_dssp EEEEEEEEECCCCSSCEECCT--TTTGGGG-----------------------G-SEEEEEEEEETTEEESCST-TTTGG
T ss_pred ceeeeccccccCchhhhhcch--hhhcccc-----------------------c-cchhhhhhhcchhhhhhch-hhhcC
Confidence 33332211 100 00000 0000000 0 1244455544432222211 12345
Q ss_pred cccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccc
Q 040332 845 FVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYK 924 (1210)
Q Consensus 845 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~ 924 (1210)
+++|+.|+++++. +..++ ..+..+ +|++|++.++ .+..++.. .+++|+.|++.+|......+
T Consensus 281 l~~L~~L~l~~~~-l~~l~---------~~~~~~-~L~~L~l~~n-~~~~l~~~-----~l~~L~~L~l~~n~~~~~~~- 342 (570)
T 2z63_A 281 LTNVSSFSLVSVT-IERVK---------DFSYNF-GWQHLELVNC-KFGQFPTL-----KLKSLKRLTFTSNKGGNAFS- 342 (570)
T ss_dssp GTTCSEEEEESCE-ECSCC---------BCCSCC-CCSEEEEESC-BCSSCCBC-----BCSSCCEEEEESCBSCCBCC-
T ss_pred cCcccEEEecCcc-chhhh---------hhhccC-CccEEeeccC-cccccCcc-----cccccCEEeCcCCccccccc-
Confidence 5666666666554 33331 222334 5666666653 33344332 35666666666654222210
Q ss_pred cccccccccccccCCcceeeeccccccccc----cccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEE
Q 040332 925 RITNDLMEKGQVFPSLEELSVDVKHIAAIN----KCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIV 1000 (1210)
Q Consensus 925 ~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~----~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~ 1000 (1210)
...+++|+.|++++|.+.... ....+++|+.|+++.+.++..+ .. +..+++|+.|+++
T Consensus 343 ---------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--------~~-~~~l~~L~~L~l~ 404 (570)
T 2z63_A 343 ---------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS--------SN-FLGLEQLEHLDFQ 404 (570)
T ss_dssp ---------CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE--------EE-EETCTTCCEEECT
T ss_pred ---------cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc--------cc-ccccCCCCEEEcc
Confidence 134566666666666554432 1225566666666444443111 11 4456667777766
Q ss_pred ccccccceeecccccchhhhhhhccccCccccc-cccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcc
Q 040332 1001 GECYVGESEEKVENGMEVIIREANKCCDLKHIL-KQESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLM 1079 (1210)
Q Consensus 1001 ~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~-~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~ 1079 (1210)
+|. +.... ...+..+++|+.|++++|......+..+..+++|++|++++|. +.
T Consensus 405 -~n~------------------------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~ 458 (570)
T 2z63_A 405 -HSN------------------------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQ 458 (570)
T ss_dssp -TSE------------------------EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EG
T ss_pred -CCc------------------------cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc-Cc
Confidence 222 11111 1234556677777777766544444445567777777777773 33
Q ss_pred --eecchhHHhhhhhceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEeec
Q 040332 1080 --KVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVN 1157 (1210)
Q Consensus 1080 --~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~ 1157 (1210)
.+ | ..+..+++|++|++++|. ++.++ ...+..+++|+.|++++| +++.++..... .+++|++|+++
T Consensus 459 ~~~~-p-~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~ 526 (570)
T 2z63_A 459 ENFL-P-DIFTELRNLTFLDLSQCQ-LEQLS-------PTAFNSLSSLQVLNMASN-QLKSVPDGIFD-RLTSLQKIWLH 526 (570)
T ss_dssp GGEE-C-SCCTTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCSCCCTTTTT-TCTTCCEEECC
T ss_pred cccc-h-hhhhcccCCCEEECCCCc-cccCC-------hhhhhcccCCCEEeCCCC-cCCCCCHHHhh-cccCCcEEEec
Confidence 23 2 234667777777777764 22221 123556777777777775 46666544332 45777777777
Q ss_pred cCCC
Q 040332 1158 DCPS 1161 (1210)
Q Consensus 1158 ~C~~ 1161 (1210)
+++-
T Consensus 527 ~N~~ 530 (570)
T 2z63_A 527 TNPW 530 (570)
T ss_dssp SSCB
T ss_pred CCcc
Confidence 7653
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=8.1e-28 Score=294.24 Aligned_cols=484 Identities=17% Similarity=0.164 Sum_probs=297.2
Q ss_pred eEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccC-cccCCCCCCCEEecCCCC
Q 040332 553 RVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLP-IEVGELICLKLLDLRDCS 629 (1210)
Q Consensus 553 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~ 629 (1210)
.+.|++++.++.+|..+. .+|++|++++|.+.. |..|+++++|++|++++|.+..+| ..++++++|++|++++|
T Consensus 8 ~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n- 84 (549)
T 2z81_A 8 GVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN- 84 (549)
T ss_dssp SEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred ceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-
Confidence 345666667777776554 567777777777666 455777777777777777776665 45677777777777776
Q ss_pred CCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccC-CCCCCCccccccCceeEEEEccc
Q 040332 630 KLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKD-INCLPRGLFFEKLERYRILIGDF 708 (1210)
Q Consensus 630 ~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~~~~~~~ 708 (1210)
.+..+++..++++++|++|++++|.+.. ...+..++.+++|+.|++++|. ...++... +
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~------------- 144 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQT------LGVTSLFPNLTNLQTLRIGNVETFSEIRRID-F------------- 144 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSS------SCSSCSCTTCTTCCEEEEEESSSCCEECTTT-T-------------
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccc------cchhhhhhccCCccEEECCCCccccccCHhh-h-------------
Confidence 5666666656777777777777766521 0234456677777777777665 33333210 0
Q ss_pred ccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchh-hhhhhhhcccccCcEEEeeCCcccccccCCc
Q 040332 709 WNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVES-FANELVKVGSSQLKHLWIEGCHEAHDALNSA 787 (1210)
Q Consensus 709 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 787 (1210)
..+++|+.|+++++ .... .+..+. .+++|++|+++++.... +
T Consensus 145 ---------------------------~~l~~L~~L~L~~n---~l~~~~~~~l~--~l~~L~~L~l~~n~~~~-~---- 187 (549)
T 2z81_A 145 ---------------------------AGLTSLNELEIKAL---SLRNYQSQSLK--SIRDIHHLTLHLSESAF-L---- 187 (549)
T ss_dssp ---------------------------TTCCEEEEEEEEET---TCCEECTTTTT--TCSEEEEEEEECSBSTT-H----
T ss_pred ---------------------------hcccccCeeeccCC---cccccChhhhh--ccccCceEecccCcccc-c----
Confidence 01344555555543 2221 122222 36788888888865311 1
Q ss_pred ccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCcccc-ccchhhhhcccccEEEEeccccccceeccc
Q 040332 788 ESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCL-FSSSIVSSFVRLQHLQIWGCPVLEEIIVVD 866 (1210)
Q Consensus 788 ~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 866 (1210)
+. ..+..+++|++|+++++...... .+......+++|+.|++.++. +.......
T Consensus 188 ---~~---------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 242 (549)
T 2z81_A 188 ---LE---------------------IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNE 242 (549)
T ss_dssp ---HH---------------------HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHH
T ss_pred ---ch---------------------hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc-cchhHHHH
Confidence 00 01123478888888886543311 112223456788888888875 32211100
Q ss_pred cccccccccccccccceeecccCcccccccCC----CcccccCCCcceeeeecCCCcccccccccccccccccccCCcce
Q 040332 867 DQEERNKNIVMFPQLQYLEMSNLEKLTSFCTG----DVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEE 942 (1210)
Q Consensus 867 ~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~----~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~ 942 (1210)
.......+++|+.|++.+|.. ..+... ......+++|+.|.+.++. +..... ...+.......++|+.
T Consensus 243 ----l~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~--~~~l~~~~~~~~~L~~ 314 (549)
T 2z81_A 243 ----LLKLLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYL--FYDLSTVYSLLEKVKR 314 (549)
T ss_dssp ----HHGGGGGCTTCCEEEEESCEE-ECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGG--SCCCCHHHHHSTTCCE
T ss_pred ----HHHHhhhhccccccccccccc-cccccccccchhhhhhhcccccccccccc-cchhhh--cccchhhhhhcccceE
Confidence 112334577888888887642 222110 0013457788888887763 211100 0001111233578888
Q ss_pred eeeccccccccccc--cccccceEeeecccccccCCccccccch--hHHHHHhcccceEEEEccccccceeecccccchh
Q 040332 943 LSVDVKHIAAINKC--QLFREDLLCKLKCLDVEFGDERTSILSL--DDFLQRFHAMKVLKIVGECYVGESEEKVENGMEV 1018 (1210)
Q Consensus 943 L~l~~~~~~~~~~~--~~l~~L~~L~l~c~~l~~~~~~~~~~~~--~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~ 1018 (1210)
|++++|.+...+.. ..+++|+.|+++.|.++. ..+ ...+..+++|+.|+++ +|
T Consensus 315 L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~~~~l~~L~~L~Ls-~N--------------- 371 (549)
T 2z81_A 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE-------EYLKNSACKGAWPSLQTLVLS-QN--------------- 371 (549)
T ss_dssp EEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCH-------HHHHHHTCTTSSTTCCEEECT-TS---------------
T ss_pred EEeccCccccCCHHHHhcCccccEEEccCCcccc-------ccccchhhhhccccCcEEEcc-CC---------------
Confidence 88888887655433 257888888887776741 001 1114567888999888 33
Q ss_pred hhhhhccccCcccccc--ccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcceecchhHHhhhhhceEE
Q 040332 1019 IIREANKCCDLKHILK--QESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEM 1096 (1210)
Q Consensus 1019 ~l~~l~~~~~L~~~~~--~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L 1096 (1210)
.++.++. ..+..+++|++|++++| .++.+|.....+++|++|++++| ++..++. .. .++|+.|
T Consensus 372 ---------~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~-~~---~~~L~~L 436 (549)
T 2z81_A 372 ---------HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKT-CI---PQTLEVL 436 (549)
T ss_dssp ---------CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCT-TS---CTTCSEE
T ss_pred ---------cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccc-hh---cCCceEE
Confidence 3443332 23567789999999988 56678777788899999999998 5777632 22 3689999
Q ss_pred eEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCccccCC-CCcCCCce
Q 040332 1097 RVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSG-GELSTPKL 1175 (1210)
Q Consensus 1097 ~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~-~~~~~~~L 1175 (1210)
++++|. ++.+ ...+++|++|+++++ +++.+|... .+++|+.|++++| +++.+|. .+..+++|
T Consensus 437 ~Ls~N~-l~~~-----------~~~l~~L~~L~Ls~N-~l~~ip~~~---~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 499 (549)
T 2z81_A 437 DVSNNN-LDSF-----------SLFLPRLQELYISRN-KLKTLPDAS---LFPVLLVMKISRN-QLKSVPDGIFDRLTSL 499 (549)
T ss_dssp ECCSSC-CSCC-----------CCCCTTCCEEECCSS-CCSSCCCGG---GCTTCCEEECCSS-CCCCCCTTGGGGCTTC
T ss_pred ECCCCC-hhhh-----------cccCChhcEEECCCC-ccCcCCCcc---cCccCCEEecCCC-ccCCcCHHHHhcCccc
Confidence 999875 4332 257889999999986 688888632 3599999999986 5666664 46788999
Q ss_pred eEEEecccc
Q 040332 1176 LKVQLDEFN 1184 (1210)
Q Consensus 1176 ~~l~i~~C~ 1184 (1210)
+.|++++|+
T Consensus 500 ~~L~l~~N~ 508 (549)
T 2z81_A 500 QKIWLHTNP 508 (549)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 999998843
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.4e-28 Score=298.99 Aligned_cols=471 Identities=16% Similarity=0.184 Sum_probs=284.7
Q ss_pred CcceEEEecCcccccC-CccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEec
Q 040332 550 IQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDL 625 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 625 (1210)
+.|++|++++|.+..+ |..+.++++|++|++++|.+.. +..|+++++|++|++++|.+..+|.. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5678888888887765 5667888888888888888777 45688888888888888888877764 788888888888
Q ss_pred CCCCCCCc--cChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCC-CCccccccCceeE
Q 040332 626 RDCSKLEV--IPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCL-PRGLFFEKLERYR 702 (1210)
Q Consensus 626 ~~~~~~~~--~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~-~~~~~~~~L~~l~ 702 (1210)
++| .+.. .|.. ++++++|++|++++|... ....+..+..+++|+.|++++|.+... |..+ .+
T Consensus 106 s~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~~------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~----- 170 (549)
T 2z81_A 106 MGN-PYQTLGVTSL-FPNLTNLQTLRIGNVETF------SEIRRIDFAGLTSLNELEIKALSLRNYQSQSL--KS----- 170 (549)
T ss_dssp TTC-CCSSSCSSCS-CTTCTTCCEEEEEESSSC------CEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TT-----
T ss_pred CCC-cccccchhhh-hhccCCccEEECCCCccc------cccCHhhhhcccccCeeeccCCcccccChhhh--hc-----
Confidence 887 5553 3333 577888888888877531 122335677788888888887776642 2211 11
Q ss_pred EEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCccccc
Q 040332 703 ILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHD 782 (1210)
Q Consensus 703 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 782 (1210)
+++|+.|++.+. ....++.... ..+++|++|++++|.....
T Consensus 171 -----------------------------------l~~L~~L~l~~n---~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 171 -----------------------------------IRDIHHLTLHLS---ESAFLLEIFA-DILSSVRYLELRDTNLARF 211 (549)
T ss_dssp -----------------------------------CSEEEEEEEECS---BSTTHHHHHH-HSTTTBSEEEEESCBCTTC
T ss_pred -----------------------------------cccCceEecccC---cccccchhhH-hhcccccEEEccCCccccc
Confidence 234444444443 2222222221 1256666666666543211
Q ss_pred ccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCcccccc--chhhhhcccccEEEEecccccc
Q 040332 783 ALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFS--SSIVSSFVRLQHLQIWGCPVLE 860 (1210)
Q Consensus 783 ~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~l~~L~~L~l~~~~~l~ 860 (1210)
.... .......++|+.|+++++......+. ...+..+++|+.+++++|. +.
T Consensus 212 ~~~~--------------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~ 264 (549)
T 2z81_A 212 QFSP--------------------------LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT-LN 264 (549)
T ss_dssp CCCC--------------------------CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE-EE
T ss_pred cccc--------------------------cchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc-cc
Confidence 0000 00011235566666665532211100 0112445667777776665 22
Q ss_pred ceeccccccccccccccccccceeecccCcccccccCCC---cccccCCCcceeeeecCCCccccccccccccccccccc
Q 040332 861 EIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGD---VNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVF 937 (1210)
Q Consensus 861 ~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~---~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~ 937 (1210)
.+..... .....+..+++|+.|.+.++. +..+.... .....+++|+.|++++| ++..+|..+ ...+
T Consensus 265 ~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~-------~~~l 333 (549)
T 2z81_A 265 GLGDFNP--SESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSF-------SQHL 333 (549)
T ss_dssp CCSCCCC--CTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHH-------HHHC
T ss_pred ccccccc--cchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccC-ccccCCHHH-------HhcC
Confidence 2110000 011223456677777766642 11111000 00123567888888877 355543211 1247
Q ss_pred CCcceeeecccccccccc-----ccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecc
Q 040332 938 PSLEELSVDVKHIAAINK-----CQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKV 1012 (1210)
Q Consensus 938 ~sL~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~ 1012 (1210)
++|+.|++++|.+....+ ...+++|+.|+++.|+++..+ .....+..+++|++|+++ +|
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~~~l~~L~~L~Ls-~N--------- 397 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ------KTGEILLTLKNLTSLDIS-RN--------- 397 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH------HHHHHGGGCTTCCEEECT-TC---------
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc------cchhhhhcCCCCCEEECC-CC---------
Confidence 888888888887665321 346788888888777774110 012457788999999998 33
Q ss_pred cccchhhhhhhccccCccccccccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcceecchhHHhhhhh
Q 040332 1013 ENGMEVIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVR 1092 (1210)
Q Consensus 1013 ~~~~~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~s 1092 (1210)
+++.++. .+..+++|+.|++++|. ++.++.. .+++|+.|++++| +++.++ ..+++
T Consensus 398 ---------------~l~~lp~-~~~~~~~L~~L~Ls~N~-l~~l~~~--~~~~L~~L~Ls~N-~l~~~~-----~~l~~ 452 (549)
T 2z81_A 398 ---------------TFHPMPD-SCQWPEKMRFLNLSSTG-IRVVKTC--IPQTLEVLDVSNN-NLDSFS-----LFLPR 452 (549)
T ss_dssp ---------------CCCCCCS-CCCCCTTCCEEECTTSC-CSCCCTT--SCTTCSEEECCSS-CCSCCC-----CCCTT
T ss_pred ---------------CCccCCh-hhcccccccEEECCCCC-cccccch--hcCCceEEECCCC-Chhhhc-----ccCCh
Confidence 3444433 35677899999999887 5555432 2478999999998 677652 46889
Q ss_pred ceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCcccc
Q 040332 1093 LKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIF 1165 (1210)
Q Consensus 1093 L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~l 1165 (1210)
|++|++++|. ++.+| ....+++|+.|+++++ +++.++..... .+++|+.|++++|+-....
T Consensus 453 L~~L~Ls~N~-l~~ip---------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 453 LQELYISRNK-LKTLP---------DASLFPVLLVMKISRN-QLKSVPDGIFD-RLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCEEECCSSC-CSSCC---------CGGGCTTCCEEECCSS-CCCCCCTTGGG-GCTTCCEEECCSSCBCCCH
T ss_pred hcEEECCCCc-cCcCC---------CcccCccCCEEecCCC-ccCCcCHHHHh-cCcccCEEEecCCCccCCC
Confidence 9999999874 66665 3457899999999985 67777765333 4699999999998854333
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.9e-27 Score=284.93 Aligned_cols=453 Identities=15% Similarity=0.086 Sum_probs=252.8
Q ss_pred eEEEecCcccccCCccccCCCCCcEEEecCccCCC-C-CCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEecCCCC
Q 040332 553 RVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-I-SGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDLRDCS 629 (1210)
Q Consensus 553 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 629 (1210)
++||++++.++.+|..+. ++|++|++++|.+.. + ..|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N- 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN- 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-
Confidence 567888888888887765 788888888888777 3 4678888888888888888776 567788888888888887
Q ss_pred CCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEEcccc
Q 040332 630 KLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILIGDFW 709 (1210)
Q Consensus 630 ~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 709 (1210)
.+..+|.. .+++|++|++++|.+. ....+..++.+++|+.|++++|.+... .+.
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N~l~------~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~------------- 133 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFNAFD------ALPICKEFGNMSQLKFLGLSTTHLEKS----SVL------------- 133 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSSCCS------SCCCCGGGGGCTTCCEEEEEESSCCGG----GGG-------------
T ss_pred ceeecCcc---ccCCccEEeccCCccc------cccchhhhccCCcceEEEecCcccchh----hcc-------------
Confidence 67777763 6788888888877662 113456778888888888887765431 001
Q ss_pred cccCcCCcceEEecCCcccchHHHHHHHhccc--cEEeecccccccchhhhhhhhhcccccCc----EEEeeCCcccccc
Q 040332 710 NWKYNICSRDFRIGLSKRICLKDVLIVQLQGI--EHLGLYGLQEHDVESFANELVKVGSSQLK----HLWIEGCHEAHDA 783 (1210)
Q Consensus 710 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~~~~~~~~~l~~~~~~~L~----~L~l~~~~~~~~~ 783 (1210)
.+++| +.|++.++........+.. +.+|+ .+.++++.....+
T Consensus 134 ---------------------------~l~~L~L~~L~l~~n~l~~~~~~~~~-----l~~l~~~~l~l~l~~n~~~~~~ 181 (520)
T 2z7x_B 134 ---------------------------PIAHLNISKVLLVLGETYGEKEDPEG-----LQDFNTESLHIVFPTNKEFHFI 181 (520)
T ss_dssp ---------------------------GGTTSCEEEEEEEECTTTTSSCCTTT-----TTTCCEEEEEEECCSSSCCCCC
T ss_pred ---------------------------ccccceeeEEEeeccccccccccccc-----ccccccceEEEEeccCcchhhh
Confidence 12233 4455544311000111111 22222 2333333322111
Q ss_pred cCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCC-------CccccccchhhhhcccccEEEEecc
Q 040332 784 LNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCR-------NLGCLFSSSIVSSFVRLQHLQIWGC 856 (1210)
Q Consensus 784 ~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~-------~l~~l~~~~~~~~l~~L~~L~l~~~ 856 (1210)
+ ...+..+++|+.|++++|. ....+ ..++.+++|+.|++.++
T Consensus 182 ~----------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 182 L----------------------------DVSVKTVANLELSNIKCVLEDNKCSYFLSIL---AKLQTNPKLSNLTLNNI 230 (520)
T ss_dssp C----------------------------CCCCTTCSEEEECCEEECCSTTTTHHHHHHH---HGGGGCTTCCEEEEEEE
T ss_pred h----------------------------hhhhhcccceeeccccccccccccceeecch---hhhccccchhhcccccc
Confidence 1 1223345667777777654 11111 12456777777777766
Q ss_pred ccccceeccccccccccccccccccceeecccCcccccccCCCc--ccccCCCcceeeeecCCCcccccc-ccccccccc
Q 040332 857 PVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDV--NIIEFPSLKELRISRCPKFMVKYK-RITNDLMEK 933 (1210)
Q Consensus 857 ~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~--~~~~~~sL~~L~i~~C~~L~~~~~-~~~~~l~~~ 933 (1210)
. +....... .......++|++|+++++.--..++.... ....+++|+.++++++.- .+|. .+..
T Consensus 231 ~-l~~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~----- 297 (520)
T 2z7x_B 231 E-TTWNSFIR-----ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYE----- 297 (520)
T ss_dssp E-EEHHHHHH-----HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHH-----
T ss_pred c-cCHHHHHH-----HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhc-----
Confidence 5 22110000 00001134677777776532224443310 003456666666665532 2210 0000
Q ss_pred ccccCCcceeeeccccccccccccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeeccc
Q 040332 934 GQVFPSLEELSVDVKHIAAINKCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVE 1013 (1210)
Q Consensus 934 ~~~~~sL~~L~l~~~~~~~~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~ 1013 (1210)
...-++|+.|++++|.+....... .+++|++|+++ +
T Consensus 298 ~~~~~~L~~L~l~~n~l~~~~~~~--------------------------------~l~~L~~L~Ls-~----------- 333 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTRMVHMLCPS--------------------------------KISPFLHLDFS-N----------- 333 (520)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCCS--------------------------------SCCCCCEEECC-S-----------
T ss_pred ccccCceeEEEcCCCccccccchh--------------------------------hCCcccEEEeE-C-----------
Confidence 000134566666555543322112 34555555555 1
Q ss_pred ccchhhhhhhccccCccccccccccCcCcccEEEEecccccc--ccCCCCccccCccEEEEccCCCcce-ecchhHHhhh
Q 040332 1014 NGMEVIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNLI--NLVPSSLSFQNLTTLKVSYCKGLMK-VLTSSIAKSL 1090 (1210)
Q Consensus 1014 ~~~~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~--~l~~~~~~l~~L~~L~i~~c~~L~~-l~~~~~~~~l 1090 (1210)
+.+....+..+..+++|+.|++++|.-.. .++.....+++|++|++++| ++.. + +...+..+
T Consensus 334 -------------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l-~~~~~~~l 398 (520)
T 2z7x_B 334 -------------NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDE-KKGDCSWT 398 (520)
T ss_dssp -------------SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCG-GGCSCCCC
T ss_pred -------------CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCccc-ccchhccC
Confidence 12222222334556666667666665332 22233456777777777777 4555 4 33345567
Q ss_pred hhceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCccccCCC-C
Q 040332 1091 VRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSGG-E 1169 (1210)
Q Consensus 1091 ~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~ 1169 (1210)
++|++|++++|.-...++. ...++|+.|++++| +++.+|.... .+++|++|++++| +++.+|.. +
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~----------~l~~~L~~L~Ls~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~~~ 464 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFR----------CLPPRIKVLDLHSN-KIKSIPKQVV--KLEALQELNVASN-QLKSVPDGIF 464 (520)
T ss_dssp TTCCEEECCSSCCCGGGGG----------SCCTTCCEEECCSS-CCCCCCGGGG--GCTTCCEEECCSS-CCCCCCTTTT
T ss_pred ccCCEEECcCCCCCcchhh----------hhcccCCEEECCCC-cccccchhhh--cCCCCCEEECCCC-cCCccCHHHh
Confidence 7788888887763333331 11267888888776 5777776544 4588888888886 57788876 6
Q ss_pred cCCCceeEEEeccc
Q 040332 1170 LSTPKLLKVQLDEF 1183 (1210)
Q Consensus 1170 ~~~~~L~~l~i~~C 1183 (1210)
..+++|++|+++++
T Consensus 465 ~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 465 DRLTSLQKIWLHTN 478 (520)
T ss_dssp TTCTTCCEEECCSS
T ss_pred ccCCcccEEECcCC
Confidence 67888888888873
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.1e-26 Score=286.76 Aligned_cols=96 Identities=16% Similarity=0.309 Sum_probs=55.3
Q ss_pred CCCCCCCCCCcEEEeecCCCcc------------------cCcccC--CCCCCCEEecCCCCCCCccChhhhcCCCcccE
Q 040332 588 ISGIGDLKKLEFLCLRGCDIRQ------------------LPIEVG--ELICLKLLDLRDCSKLEVIPPHILSNLSHLEE 647 (1210)
Q Consensus 588 ~~~i~~L~~L~~L~l~~~~l~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~ 647 (1210)
|..++++++|++|++++|.+.. +|..++ ++++|++|++++|...+.+|.. ++++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCE
Confidence 4456666666666666666665 666666 6666666666666445555544 366666666
Q ss_pred EEccCCC-Cccccccccc-cCccccccC------CCCCEEEeeccCCCCCCC
Q 040332 648 LNIGDNS-FYHWEVEVDG-VKNASLNEL------KHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 648 L~l~~n~-~~~~~~~~~~-~~~~~l~~L------~~L~~L~l~~~~~~~~~~ 691 (1210)
|++++|. + .+ ..+..++.+ ++|+.|++++|.+..+|.
T Consensus 278 L~Ls~n~~l-------~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 278 INVACNRGI-------SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322 (636)
T ss_dssp EECTTCTTS-------CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred EECcCCCCC-------ccccchHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence 6666664 3 12 334444443 566666666665554443
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1e-25 Score=281.62 Aligned_cols=134 Identities=23% Similarity=0.305 Sum_probs=98.8
Q ss_pred cceEEEecCcccccCC-ccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecC
Q 040332 551 QVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLR 626 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 626 (1210)
.+++|||++|.|+.+| .+|.++++|++|+|++|.+.. +..|.+|++|++|+|++|+++.+|. .++++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 5778888888888775 467788888888888887777 3457788888888888888887775 46778888888888
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCC
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
+| .+..+|+..++++++|++|++++|.+. ....+..++.+++|+.|++++|.+..++.
T Consensus 133 ~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 133 ET-NLASLENFPIGHLKTLKELNVAHNLIQ------SFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp TS-CCCCSTTCCCTTCTTCCEEECCSSCCC------CCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CC-cCCCCChhhhhcCcccCeeccccCccc------cCCCchhhccchhhhhhcccCcccccccc
Confidence 87 677777666678888888888877652 12345667777888888888777766544
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=5.2e-26 Score=284.06 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=33.6
Q ss_pred CCCCCCCCCCcEEEeecCCCcc------------------cCcccC--CCCCCCEEecCCCCCCCccChhhhcCCCcccE
Q 040332 588 ISGIGDLKKLEFLCLRGCDIRQ------------------LPIEVG--ELICLKLLDLRDCSKLEVIPPHILSNLSHLEE 647 (1210)
Q Consensus 588 ~~~i~~L~~L~~L~l~~~~l~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~ 647 (1210)
|..|++|++|++|++++|.+.. +|..++ ++++|++|++++|...+.+|.. ++++++|++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCE
Confidence 3445555555555555555554 555544 5555555555555444444433 355555555
Q ss_pred EEccCCC
Q 040332 648 LNIGDNS 654 (1210)
Q Consensus 648 L~l~~n~ 654 (1210)
|++++|.
T Consensus 520 L~Ls~N~ 526 (876)
T 4ecn_A 520 LNIACNR 526 (876)
T ss_dssp EECTTCT
T ss_pred EECcCCC
Confidence 5555554
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=8.5e-25 Score=273.23 Aligned_cols=526 Identities=13% Similarity=0.074 Sum_probs=274.9
Q ss_pred EEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecCCCCC
Q 040332 554 VINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLRDCSK 630 (1210)
Q Consensus 554 ~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 630 (1210)
..+.++..++++|..+. .++++|+|++|.++. +..|.++++|++|+|++|+++.+|+ .|.+|++|++|++++| .
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-c
Confidence 45777778889998764 489999999999998 4579999999999999999999976 5899999999999999 8
Q ss_pred CCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCcc---ccccCceeEEEEcc
Q 040332 631 LEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL---FFEKLERYRILIGD 707 (1210)
Q Consensus 631 ~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~---~~~~L~~l~~~~~~ 707 (1210)
+..+|++.|+++++|++|++++|.+ .+..+..|+++++|+.|++++|.+..++... .+.+|+.+.+..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l-------~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNL-------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCC-------CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcC-------CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 9999998889999999999999987 2344567899999999999999987654322 33445444432211
Q ss_pred cccccCcCCcceEEecCCcccchHHHHHHHhcccc----EEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccc
Q 040332 708 FWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIE----HLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDA 783 (1210)
Q Consensus 708 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~ 783 (1210)
...+....+..+.+++ .+.++. +....+..... ....++.+.+.++....
T Consensus 185 -------------------l~~~~~~~l~~L~~l~~~~~~~~ls~---n~l~~i~~~~~--~~~~~~~l~l~~n~~~~-- 238 (635)
T 4g8a_A 185 -------------------IQSIYCTDLRVLHQMPLLNLSLDLSL---NPMNFIQPGAF--KEIRLHKLTLRNNFDSL-- 238 (635)
T ss_dssp -------------------CCEECGGGGHHHHTCTTCCCEEECTT---CCCCEECTTTT--TTCEEEEEEEESCCSSH--
T ss_pred -------------------ccccccccccchhhhhhhhhhhhccc---CcccccCcccc--cchhhhhhhhhcccccc--
Confidence 1111111111122221 223322 12222211111 12233444444432110
Q ss_pred cCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEee--cCCCcccc--ccchhhhhcccccEEEEeccccc
Q 040332 784 LNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVC--NCRNLGCL--FSSSIVSSFVRLQHLQIWGCPVL 859 (1210)
Q Consensus 784 ~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~--~c~~l~~l--~~~~~~~~l~~L~~L~l~~~~~l 859 (1210)
.... ..+..+..++...+. .......+ .....+..+..+....+.....-
T Consensus 239 ----------~~~~----------------~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 239 ----------NVMK----------------TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp ----------HHHH----------------HHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ----------cccc----------------hhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 0000 001111222222221 11111000 00111122333333333322110
Q ss_pred cceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCC
Q 040332 860 EEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPS 939 (1210)
Q Consensus 860 ~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~s 939 (1210)
..... .......++.++.+.+.++. +..+.. ....++|+.|++.+|. +..++ ...++.
T Consensus 293 ~~~~~------~~~~~~~~~~l~~l~~~~~~-~~~~~~----~~~~~~L~~L~l~~~~-~~~~~----------~~~l~~ 350 (635)
T 4g8a_A 293 YYLDG------IIDLFNCLTNVSSFSLVSVT-IERVKD----FSYNFGWQHLELVNCK-FGQFP----------TLKLKS 350 (635)
T ss_dssp SCEEE------CTTTTGGGTTCSEEEEESCE-EEECGG----GGSCCCCSEEEEESCE-ESSCC----------CCBCTT
T ss_pred ccccc------hhhhhhhhcccccccccccc-cccccc----cccchhhhhhhccccc-ccCcC----------cccchh
Confidence 00000 01112223344444444322 111111 1123444444444441 11110 112334
Q ss_pred cceeeeccccccccccccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccccchhh
Q 040332 940 LEELSVDVKHIAAINKCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVI 1019 (1210)
Q Consensus 940 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~ 1019 (1210)
|+.+.+..+..........+++|+.++++.+.+... ...+..+..+.+|+.|++. .+..............+.
T Consensus 351 L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~------~~~~~~~~~~~~L~~L~~~-~~~~~~~~~~~~~l~~L~ 423 (635)
T 4g8a_A 351 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK------GCCSQSDFGTISLKYLDLS-FNGVITMSSNFLGLEQLE 423 (635)
T ss_dssp CCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE------EECCHHHHSCSCCCEEECC-SCSEEEECSCCTTCTTCC
T ss_pred hhhcccccccCCCCcccccccccccchhhccccccc------cccccchhhhhhhhhhhcc-cccccccccccccccccc
Confidence 444444444333333333344444444433333100 0112223334444444444 222111100000000011
Q ss_pred hhhhccccCccccccccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcceecchhHHhhhhhceEEeEc
Q 040332 1020 IREANKCCDLKHILKQESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVS 1099 (1210)
Q Consensus 1020 l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~ 1099 (1210)
...+..+......+...+..+.+++.++++.+..-...+.....+++|+.|++++|..+..+.+ ..+..+++|++|+++
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLS 502 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECT
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc-hhhhhccccCEEECC
Confidence 1111122222233334456677888888877665444444556788888888888865655534 346778888888888
Q ss_pred ccccHHHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCcccc-CCCCcCC-CceeE
Q 040332 1100 ECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIF-SGGELST-PKLLK 1177 (1210)
Q Consensus 1100 ~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~l-p~~~~~~-~~L~~ 1177 (1210)
+|. ++.++. ..+..+++|++|+|+++ ++++++..... .+++|+.|+++++ ++..+ |..+..+ ++|+.
T Consensus 503 ~N~-L~~l~~-------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 503 QCQ-LEQLSP-------TAFNSLSSLQVLNMSHN-NFFSLDTFPYK-CLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp TSC-CCEECT-------TTTTTCTTCCEEECTTS-CCCBCCCGGGT-TCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCE
T ss_pred CCc-cCCcCh-------HHHcCCCCCCEEECCCC-cCCCCChhHHh-CCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCE
Confidence 874 554432 24677888888888875 67777654333 4688889998885 45555 4455555 57888
Q ss_pred EEecc
Q 040332 1178 VQLDE 1182 (1210)
Q Consensus 1178 l~i~~ 1182 (1210)
|++++
T Consensus 572 L~L~~ 576 (635)
T 4g8a_A 572 LNLTQ 576 (635)
T ss_dssp EECTT
T ss_pred EEeeC
Confidence 88864
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=6.6e-26 Score=274.93 Aligned_cols=437 Identities=15% Similarity=0.118 Sum_probs=263.0
Q ss_pred CcceEEEecCcccccCC-ccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 550 IQVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
++|++|++++|.+..+| ..+..+++|++|++++|.+.. |..|+++++|++|++++|.+..+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 68899999999998876 578999999999999999888 66799999999999999999999877 89999999999
Q ss_pred CCCCCCc--cChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCC--CEEEeeccCC--CC-CCCccccccCc
Q 040332 627 DCSKLEV--IPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHL--TSLQLRIKDI--NC-LPRGLFFEKLE 699 (1210)
Q Consensus 627 ~~~~~~~--~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L--~~L~l~~~~~--~~-~~~~~~~~~L~ 699 (1210)
+| .+.. +|.. ++++++|++|++++|.+. + ..+..+++| +.|++++|.+ .. .|.. +..+.
T Consensus 99 ~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~-------~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~--l~~l~ 164 (520)
T 2z7x_B 99 FN-AFDALPICKE-FGNMSQLKFLGLSTTHLE-------K---SSVLPIAHLNISKVLLVLGETYGEKEDPEG--LQDFN 164 (520)
T ss_dssp SS-CCSSCCCCGG-GGGCTTCCEEEEEESSCC-------G---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT--TTTCC
T ss_pred CC-ccccccchhh-hccCCcceEEEecCcccc-------h---hhccccccceeeEEEeeccccccccccccc--ccccc
Confidence 98 5554 4555 699999999999988762 1 356677777 8999998877 32 2222 22222
Q ss_pred eeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcc
Q 040332 700 RYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHE 779 (1210)
Q Consensus 700 ~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 779 (1210)
. ....+.+.+. .............+++|+.|++++|..
T Consensus 165 ~---------------------------------------~~l~l~l~~n---~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 165 T---------------------------------------ESLHIVFPTN---KEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp E---------------------------------------EEEEEECCSS---SCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred c---------------------------------------ceEEEEeccC---cchhhhhhhhhhcccceeecccccccc
Confidence 1 0011122221 111111111112356666666666532
Q ss_pred cccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhh--hhcccccEEEEeccc
Q 040332 780 AHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIV--SSFVRLQHLQIWGCP 857 (1210)
Q Consensus 780 ~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~~l~~L~~L~l~~~~ 857 (1210)
... ...+. .. ...+..+++|+.|+++++......+. ... ...++|++|++++|.
T Consensus 203 ~~~----------~~~~~----------~~---~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 203 DNK----------CSYFL----------SI---LAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp TTT----------THHHH----------HH---HHGGGGCTTCCEEEEEEEEEEHHHHH-HHHHHHHTSSCSEEEEEEEE
T ss_pred ccc----------cceee----------cc---hhhhccccchhhccccccccCHHHHH-HHHHHhhhCcccEEEeeccc
Confidence 100 00000 00 01233446666677666542221100 000 123467777777765
Q ss_pred cccceecccccccccccc-----ccccccceeecccCcccccccCCCcccccC---CCcceeeeecCCCccccccccccc
Q 040332 858 VLEEIIVVDDQEERNKNI-----VMFPQLQYLEMSNLEKLTSFCTGDVNIIEF---PSLKELRISRCPKFMVKYKRITND 929 (1210)
Q Consensus 858 ~l~~l~~~~~~~~~~~~~-----~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~---~sL~~L~i~~C~~L~~~~~~~~~~ 929 (1210)
-...++ ..+ ..++.|+.+++.++.- .++... +..+ ++|+.|++++|. +...+
T Consensus 259 l~~~~p---------~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~--~~~~~~~~~L~~L~l~~n~-l~~~~------ 318 (520)
T 2z7x_B 259 LQGQLD---------FRDFDYSGTSLKALSIHQVVSDVF--GFPQSY--IYEIFSNMNIKNFTVSGTR-MVHML------ 318 (520)
T ss_dssp EESCCC---------CCCCCCCSCCCCEEEEEEEEECCC--CSCTHH--HHHHHHTCCCSEEEEESSC-CCCCC------
T ss_pred ccCccc---------cchhhcccccCceeEeccccccce--ecchhh--hhcccccCceeEEEcCCCc-ccccc------
Confidence 221331 122 4566666666665332 333110 1111 457777777764 22210
Q ss_pred ccccccccCCcceeeecccccccccc--ccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccc
Q 040332 930 LMEKGQVFPSLEELSVDVKHIAAINK--CQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGE 1007 (1210)
Q Consensus 930 l~~~~~~~~sL~~L~l~~~~~~~~~~--~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~ 1007 (1210)
....+++|+.|++++|.+....+ ...+++|+.|+++.|+++.. ...+..+..+++|++|+++ +
T Consensus 319 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l------~~~~~~~~~l~~L~~L~Ls-~----- 383 (520)
T 2z7x_B 319 ---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL------SKIAEMTTQMKSLQQLDIS-Q----- 383 (520)
T ss_dssp ---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH------HHHHHHHTTCTTCCEEECC-S-----
T ss_pred ---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc------ccchHHHhhCCCCCEEECC-C-----
Confidence 01456777777777777665322 34677777887766666410 0123456778888888887 2
Q ss_pred eeecccccchhhhhhhccccCccc-cccccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcceecchhH
Q 040332 1008 SEEKVENGMEVIIREANKCCDLKH-ILKQESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMKVLTSSI 1086 (1210)
Q Consensus 1008 ~~~~~~~~~~~~l~~l~~~~~L~~-~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~ 1086 (1210)
+.+.. ++...+..+++|+.|++++|.-....+... .++|+.|++++| +++.+ |..+
T Consensus 384 -------------------N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N-~l~~i-p~~~ 440 (520)
T 2z7x_B 384 -------------------NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN-KIKSI-PKQV 440 (520)
T ss_dssp -------------------SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC--CTTCCEEECCSS-CCCCC-CGGG
T ss_pred -------------------CcCCcccccchhccCccCCEEECcCCCCCcchhhhh--cccCCEEECCCC-ccccc-chhh
Confidence 33333 444445667788888888876544443322 168888888888 67776 3333
Q ss_pred HhhhhhceEEeEcccccHHHHHhhccccccccccccccccccccccccc
Q 040332 1087 AKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKS 1135 (1210)
Q Consensus 1087 ~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 1135 (1210)
..+++|++|++++|. ++.+|. ..+..+++|+.|++++++-
T Consensus 441 -~~l~~L~~L~L~~N~-l~~l~~-------~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 441 -VKLEALQELNVASNQ-LKSVPD-------GIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp -GGCTTCCEEECCSSC-CCCCCT-------TTTTTCTTCCEEECCSSCB
T ss_pred -hcCCCCCEEECCCCc-CCccCH-------HHhccCCcccEEECcCCCC
Confidence 378888888888864 555552 1256778888888888663
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.2e-24 Score=271.68 Aligned_cols=153 Identities=12% Similarity=0.149 Sum_probs=107.6
Q ss_pred ccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhhhccccCccccccccc--
Q 040332 960 REDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILKQES-- 1037 (1210)
Q Consensus 960 ~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~~~l-- 1037 (1210)
++|+.|+++.|.++ ..+...+..+++|+.|+++ +|. +..++...+
T Consensus 673 ~~L~~L~Ls~N~L~--------~lp~~~~~~l~~L~~L~Ls-~N~------------------------L~~ip~~~~~~ 719 (876)
T 4ecn_A 673 INASTVTLSYNEIQ--------KFPTELFATGSPISTIILS-NNL------------------------MTSIPENSLKP 719 (876)
T ss_dssp CCEEEEECCSSCCC--------SCCHHHHHTTCCCSEEECC-SCC------------------------CSCCCTTSSSC
T ss_pred CCcCEEEccCCcCC--------ccCHHHHccCCCCCEEECC-CCc------------------------CCccChHHhcc
Confidence 46667777666663 1335566688899999998 333 333333322
Q ss_pred -----cCcCcccEEEEeccccccccCCCCc--cccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccc------cH
Q 040332 1038 -----SNMNNLVILHVIRCNNLINLVPSSL--SFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECN------MI 1104 (1210)
Q Consensus 1038 -----~~l~~L~~L~l~~c~~L~~l~~~~~--~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~------~l 1104 (1210)
.++++|+.|++++|. ++.+|.... .+++|+.|++++| ++..+ |.. +..+++|+.|++++|+ ..
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~-l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYN-CFSSF-PTQ-PLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSS-CCSSC-CCG-GGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCC-CCCcc-chh-hhcCCCCCEEECCCCCCccccccc
Confidence 234489999999884 667777666 8999999999998 67776 444 4689999999998744 22
Q ss_pred HHHHhhcccccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCc
Q 040332 1105 TEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSM 1162 (1210)
Q Consensus 1105 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l 1162 (1210)
..+| ..+..+++|+.|+|++|. ++.+|... +++|+.|++++|+-.
T Consensus 796 ~~ip--------~~l~~L~~L~~L~Ls~N~-L~~Ip~~l----~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 796 RQWP--------TGITTCPSLIQLQIGSND-IRKVDEKL----TPQLYILDIADNPNI 840 (876)
T ss_dssp CCCC--------TTGGGCSSCCEEECCSSC-CCBCCSCC----CSSSCEEECCSCTTC
T ss_pred ccCh--------HHHhcCCCCCEEECCCCC-CCccCHhh----cCCCCEEECCCCCCC
Confidence 2222 356789999999999875 48888753 279999999998743
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=4.1e-25 Score=270.07 Aligned_cols=457 Identities=16% Similarity=0.086 Sum_probs=256.6
Q ss_pred CCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEec
Q 040332 549 MIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDL 625 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l 625 (1210)
+...++++++++.++.+|..+. ++|++|++++|.+.. +..|+++++|++|++++|.+..+ |..++++++|++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 3344788888888888887664 788888888888877 35688888888888888888877 556788888888888
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEE
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILI 705 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~ 705 (1210)
++| .+..+|.. .+++|++|++++|.+.. -..+..++++++|+.|++++|.+....- ..
T Consensus 108 s~N-~l~~lp~~---~l~~L~~L~Ls~N~l~~------l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~-------- 165 (562)
T 3a79_B 108 SHN-RLQNISCC---PMASLRHLDLSFNDFDV------LPVCKEFGNLTKLTFLGLSAAKFRQLDL----LP-------- 165 (562)
T ss_dssp TTS-CCCEECSC---CCTTCSEEECCSSCCSB------CCCCGGGGGCTTCCEEEEECSBCCTTTT----GG--------
T ss_pred CCC-cCCccCcc---ccccCCEEECCCCCccc------cCchHhhcccCcccEEecCCCccccCch----hh--------
Confidence 887 67778864 78888888888887621 1234678888888888888776653211 11
Q ss_pred cccccccCcCCcceEEecCCcccchHHHHHHHhccc--cEEeecccccccchhhhhhhhhcccccCc----EEEeeCCcc
Q 040332 706 GDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGI--EHLGLYGLQEHDVESFANELVKVGSSQLK----HLWIEGCHE 779 (1210)
Q Consensus 706 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~~~~~~~~~l~~~~~~~L~----~L~l~~~~~ 779 (1210)
+++| +.|+++++........+ ..+.+|. .+.++++..
T Consensus 166 --------------------------------l~~L~L~~L~L~~n~l~~~~~~~-----~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 166 --------------------------------VAHLHLSCILLDLVSYHIKGGET-----ESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp --------------------------------GTTSCEEEEEEEESSCCCCSSSC-----CEEEECCEEEEEEEECSSSC
T ss_pred --------------------------------hhhceeeEEEeecccccccccCc-----ccccccCcceEEEEecCccc
Confidence 1222 44444442100000000 0112211 223333322
Q ss_pred cccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCC----CccccccchhhhhcccccEEEEec
Q 040332 780 AHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCR----NLGCLFSSSIVSSFVRLQHLQIWG 855 (1210)
Q Consensus 780 ~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~----~l~~l~~~~~~~~l~~L~~L~l~~ 855 (1210)
...++ ...+..+++|+.|+++++. .+... ...+..+++|+.|++.+
T Consensus 209 ~~~~~----------------------------~~~~~~l~~L~~L~l~~n~~~~~~l~~~--~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 209 FSVQV----------------------------NMSVNALGHLQLSNIKLNDENCQRLMTF--LSELTRGPTLLNVTLQH 258 (562)
T ss_dssp CCCCC----------------------------EEEESSEEEEEEEEEECCSTTHHHHHHH--HHHHHSCSSCEEEEEEE
T ss_pred hhhhh----------------------------hhcccccceEEEecccccccccchHHHH--HHHHhccCcceEEEecC
Confidence 11100 1122334667777777643 11111 12245667777777776
Q ss_pred cccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcc-cccccccccccccc
Q 040332 856 CPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFM-VKYKRITNDLMEKG 934 (1210)
Q Consensus 856 ~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~-~~~~~~~~~l~~~~ 934 (1210)
+. +..-... ........++|++|+++++.--..++.... ....++|+.|.+.++..-. .+|.... ...
T Consensus 259 ~~-l~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~-~~~~~~L~~L~~~~~~~~~~~~p~~~~----~~~ 327 (562)
T 3a79_B 259 IE-TTWKCSV-----KLFQFFWPRPVEYLNIYNLTITERIDREEF-TYSETALKSLMIEHVKNQVFLFSKEAL----YSV 327 (562)
T ss_dssp EE-ECHHHHH-----HHHHHHTTSSEEEEEEEEEEECSCCCCCCC-CCCSCSCCEEEEEEEEECCCSSCHHHH----HHH
T ss_pred Cc-CcHHHHH-----HHHHhhhcccccEEEEeccEeeccccchhh-hcccccchheehhhcccceeecChhhh----hhh
Confidence 54 2111000 000111234777777777543224443310 0001334444333321100 1110000 000
Q ss_pred cccCCcceeeeccccccccccccccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccc
Q 040332 935 QVFPSLEELSVDVKHIAAINKCQLFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVEN 1014 (1210)
Q Consensus 935 ~~~~sL~~L~l~~~~~~~~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~ 1014 (1210)
...++|+.|++++|.+....... .+++|++|+++ +
T Consensus 328 ~~~~~L~~L~l~~n~~~~~~~~~--------------------------------~l~~L~~L~l~-~------------ 362 (562)
T 3a79_B 328 FAEMNIKMLSISDTPFIHMVCPP--------------------------------SPSSFTFLNFT-Q------------ 362 (562)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCS--------------------------------SCCCCCEEECC-S------------
T ss_pred hccCcceEEEccCCCcccccCcc--------------------------------CCCCceEEECC-C------------
Confidence 01134566666655543322112 34555555555 1
Q ss_pred cchhhhhhhccccCccccccccccCcCcccEEEEecccccccc---CCCCccccCccEEEEccCCCcce-ecchhHHhhh
Q 040332 1015 GMEVIIREANKCCDLKHILKQESSNMNNLVILHVIRCNNLINL---VPSSLSFQNLTTLKVSYCKGLMK-VLTSSIAKSL 1090 (1210)
Q Consensus 1015 ~~~~~l~~l~~~~~L~~~~~~~l~~l~~L~~L~l~~c~~L~~l---~~~~~~l~~L~~L~i~~c~~L~~-l~~~~~~~~l 1090 (1210)
+.+....+..+..+++|+.|++++|. ++.+ +..+..+++|++|++++| ++.. + +...+..+
T Consensus 363 ------------n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~~l 427 (562)
T 3a79_B 363 ------------NVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLN-SLNSHA-YDRTCAWA 427 (562)
T ss_dssp ------------SCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTS-CCBSCC-SSCCCCCC
T ss_pred ------------CccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCC-cCCCcc-ChhhhcCc
Confidence 22333233345566677777777654 3332 233567788888888887 4655 4 44455677
Q ss_pred hhceEEeEcccccHHHHHhhcccccccccccc-cccccccccccccccccccCCccccCCcccEEeeccCCCccccCCC-
Q 040332 1091 VRLKEMRVSECNMITEIVLAVVDDAVDEIIVF-SELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSGG- 1168 (1210)
Q Consensus 1091 ~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~- 1168 (1210)
++|++|++++|.--..++ ..+ ++|+.|+++++ +++.+|.+.. .+++|++|++++| +++.+|.+
T Consensus 428 ~~L~~L~l~~n~l~~~~~-----------~~l~~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~~ 492 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVF-----------RCLPPKVKVLDLHNN-RIMSIPKDVT--HLQALQELNVASN-QLKSVPDGV 492 (562)
T ss_dssp TTCCEEECCSSCCCGGGG-----------SSCCTTCSEEECCSS-CCCCCCTTTT--SSCCCSEEECCSS-CCCCCCTTS
T ss_pred ccCCEEECCCCCCCcchh-----------hhhcCcCCEEECCCC-cCcccChhhc--CCCCCCEEECCCC-CCCCCCHHH
Confidence 888888888876333332 223 68999999886 7888887665 4589999999885 67888877
Q ss_pred CcCCCceeEEEecc
Q 040332 1169 ELSTPKLLKVQLDE 1182 (1210)
Q Consensus 1169 ~~~~~~L~~l~i~~ 1182 (1210)
+..+++|+.+++++
T Consensus 493 ~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 493 FDRLTSLQYIWLHD 506 (562)
T ss_dssp TTTCTTCCCEECCS
T ss_pred HhcCCCCCEEEecC
Confidence 77888999999987
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.2e-25 Score=277.30 Aligned_cols=357 Identities=16% Similarity=0.152 Sum_probs=210.6
Q ss_pred hhhcCCcceEEEecCccccc------------------CCcccc--CCCCCcEEEecCccCCC--CCCCCCCCCCcEEEe
Q 040332 545 FFERMIQVRVINLSYVDLLS------------------LPSSLV--LLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCL 602 (1210)
Q Consensus 545 ~~~~l~~Lr~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l 602 (1210)
.|+++++|++|+|++|.+.. +|+.++ ++++|++|++++|.+.. |..|+++++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 47788888888888888887 888888 88888888888888776 777888888888888
Q ss_pred ecCC-Cc--ccCcccCCC------CCCCEEecCCCCCCCccCh--hhhcCCCcccEEEccCCCCccccccccccCccccc
Q 040332 603 RGCD-IR--QLPIEVGEL------ICLKLLDLRDCSKLEVIPP--HILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLN 671 (1210)
Q Consensus 603 ~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~p~--~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 671 (1210)
++|. ++ .+|..++++ ++|++|++++| .+..+|. . ++++++|++|++++|.+ .+..+ .++
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l-------~g~ip-~~~ 350 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQL-------EGKLP-AFG 350 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCC-------EEECC-CCE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcC-------ccchh-hhC
Confidence 8887 77 488888776 88888888888 6668887 4 58888888888888876 33455 788
Q ss_pred cCCCCCEEEeeccCCCCCCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhcc-ccEEeecccc
Q 040332 672 ELKHLTSLQLRIKDINCLPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQG-IEHLGLYGLQ 750 (1210)
Q Consensus 672 ~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~ 750 (1210)
.+++|+.|++++|.+..+|..+ . .+++ |+.|+++++
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l--~----------------------------------------~l~~~L~~L~Ls~N- 387 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANF--C----------------------------------------GFTEQVENLSFAHN- 387 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTS--E----------------------------------------EECTTCCEEECCSS-
T ss_pred CCCCCCEEECCCCccccccHhh--h----------------------------------------hhcccCcEEEccCC-
Confidence 8888888888888777666542 0 1344 666666664
Q ss_pred cccchhhhhhhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecC
Q 040332 751 EHDVESFANELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNC 830 (1210)
Q Consensus 751 ~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 830 (1210)
.+..++..+....+++|++|++++|......+..+... ......+++|+.|++++|
T Consensus 388 --~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~----------------------~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 388 --KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL----------------------DPTPFKGINVSSINLSNN 443 (636)
T ss_dssp --CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT----------------------CSSCCCCCCEEEEECCSS
T ss_pred --cCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc----------------------ccccccCCCCCEEECcCC
Confidence 33344433332223467777777765443332221100 000012345666666665
Q ss_pred CCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCCcccc--cCCCc
Q 040332 831 RNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNII--EFPSL 908 (1210)
Q Consensus 831 ~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~--~~~sL 908 (1210)
.. ..++. ..+..+++|++|++++|. +..++...... .......+++|++|+++++ ++..++.. +. .+++|
T Consensus 444 ~l-~~lp~-~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~-~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~~~~~l~~L 515 (636)
T 4eco_A 444 QI-SKFPK-ELFSTGSPLSSINLMGNM-LTEIPKNSLKD-ENENFKNTYLLTSIDLRFN-KLTKLSDD---FRATTLPYL 515 (636)
T ss_dssp CC-CSCCT-HHHHTTCCCSEEECCSSC-CSBCCSSSSEE-TTEECTTGGGCCEEECCSS-CCCBCCGG---GSTTTCTTC
T ss_pred cc-CcCCH-HHHccCCCCCEEECCCCC-CCCcCHHHhcc-ccccccccCCccEEECcCC-cCCccChh---hhhccCCCc
Confidence 33 23332 233446666666666655 44432211000 0000112236666666663 44444432 22 45666
Q ss_pred ceeeeecCCCcccccccccccccccccccCCcceeeecc------cccccccc--ccccccceEeeecccccccCCcccc
Q 040332 909 KELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDV------KHIAAINK--CQLFREDLLCKLKCLDVEFGDERTS 980 (1210)
Q Consensus 909 ~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~------~~~~~~~~--~~~l~~L~~L~l~c~~l~~~~~~~~ 980 (1210)
++|++++| .+..+|. ....+++|+.|++++ |.+....| ...+++|+.|+++.|.+...+..
T Consensus 516 ~~L~Ls~N-~l~~ip~--------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-- 584 (636)
T 4eco_A 516 VGIDLSYN-SFSKFPT--------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-- 584 (636)
T ss_dssp CEEECCSS-CCSSCCC--------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC--
T ss_pred CEEECCCC-CCCCcCh--------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh--
Confidence 66666665 3333322 223356666666633 33332222 22566666666655555322210
Q ss_pred ccchhHHHHHhcccceEEEEccccccc
Q 040332 981 ILSLDDFLQRFHAMKVLKIVGECYVGE 1007 (1210)
Q Consensus 981 ~~~~~~~~~~l~~L~~L~i~~~c~~~~ 1007 (1210)
+ .++|+.|+++ +|++..
T Consensus 585 -------~--~~~L~~L~Ls-~N~l~~ 601 (636)
T 4eco_A 585 -------I--TPNISVLDIK-DNPNIS 601 (636)
T ss_dssp -------C--CTTCCEEECC-SCTTCE
T ss_pred -------H--hCcCCEEECc-CCCCcc
Confidence 1 1566666666 555443
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1e-24 Score=266.49 Aligned_cols=124 Identities=22% Similarity=0.304 Sum_probs=103.9
Q ss_pred CcceEEEecCcccccCC-ccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 550 IQVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
+.|++|++++|.+..+| .++.++++|++|++++|.+.. |..|+++++|++|++++|.+..+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 67899999999999886 589999999999999999888 56799999999999999999999987 89999999999
Q ss_pred CCCCCCccCh-hhhcCCCcccEEEccCCCCccccccccccCccccccCCCC--CEEEeeccCC
Q 040332 627 DCSKLEVIPP-HILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHL--TSLQLRIKDI 686 (1210)
Q Consensus 627 ~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L--~~L~l~~~~~ 686 (1210)
+| .+..+|. ..++++++|++|++++|.+. . ..+..+++| +.|++++|.+
T Consensus 130 ~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~-------~---~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 130 FN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR-------Q---LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SS-CCSBCCCCGGGGGCTTCCEEEEECSBCC-------T---TTTGGGTTSCEEEEEEEESSC
T ss_pred CC-CccccCchHhhcccCcccEEecCCCccc-------c---CchhhhhhceeeEEEeecccc
Confidence 98 6777652 34699999999999988762 1 245555555 9999999887
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=4.7e-23 Score=245.30 Aligned_cols=122 Identities=24% Similarity=0.351 Sum_probs=101.0
Q ss_pred hcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 547 ERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
..+.+|+.|+++++.+..+|. +..+++|++|++++|.+...+.++++++|++|++++|.+..+|. ++++++|++|+++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 346788999999999998885 88899999999999998883339999999999999999988887 9999999999999
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEee
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLR 682 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 682 (1210)
+| .+..++. ++++++|++|++++|.+. ....+..+++|+.|++.
T Consensus 121 ~n-~l~~~~~--~~~l~~L~~L~l~~n~l~---------~~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 121 NN-QITDIDP--LKNLTNLNRLELSSNTIS---------DISALSGLTSLQQLSFG 164 (466)
T ss_dssp SS-CCCCCGG--GTTCTTCSEEEEEEEEEC---------CCGGGTTCTTCSEEEEE
T ss_pred CC-CCCCChH--HcCCCCCCEEECCCCccC---------CChhhccCCcccEeecC
Confidence 98 7777776 689999999999887652 12347777888888775
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.4e-23 Score=247.04 Aligned_cols=284 Identities=16% Similarity=0.107 Sum_probs=147.8
Q ss_pred CCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCC-------------cEEEeecCCCcccCcc
Q 040332 549 MIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKL-------------EFLCLRGCDIRQLPIE 613 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L-------------~~L~l~~~~l~~lp~~ 613 (1210)
.++|++|++++|.+..+|++++++++|++|++++|.+.. |..++++.+| ++|++++|.++.+|..
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 567888888888888888888888888888888888764 7778888765 7888888887777762
Q ss_pred cCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccC-CCCCEEEeeccCCCCCCCc
Q 040332 614 VGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNEL-KHLTSLQLRIKDINCLPRG 692 (1210)
Q Consensus 614 i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~~ 692 (1210)
.++|++|++++| .+..+|.. +++|++|++++|.+.. +..+ ++|+.|++++|.+..+|.
T Consensus 90 ---~~~L~~L~l~~n-~l~~lp~~----~~~L~~L~l~~n~l~~------------l~~~~~~L~~L~L~~n~l~~lp~- 148 (454)
T 1jl5_A 90 ---PPHLESLVASCN-SLTELPEL----PQSLKSLLVDNNNLKA------------LSDLPPLLEYLGVSNNQLEKLPE- 148 (454)
T ss_dssp ---CTTCSEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSC------------CCSCCTTCCEEECCSSCCSSCCC-
T ss_pred ---cCCCCEEEccCC-cCCccccc----cCCCcEEECCCCccCc------------ccCCCCCCCEEECcCCCCCCCcc-
Confidence 367888888877 56667642 3677888887776521 1112 577777777777665552
Q ss_pred cccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEE
Q 040332 693 LFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHL 772 (1210)
Q Consensus 693 ~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L 772 (1210)
+.+ +++|+.|+++++ .++.++. .+++|++|
T Consensus 149 --~~~----------------------------------------l~~L~~L~l~~N---~l~~lp~-----~~~~L~~L 178 (454)
T 1jl5_A 149 --LQN----------------------------------------SSFLKIIDVDNN---SLKKLPD-----LPPSLEFI 178 (454)
T ss_dssp --CTT----------------------------------------CTTCCEEECCSS---CCSCCCC-----CCTTCCEE
T ss_pred --cCC----------------------------------------CCCCCEEECCCC---cCcccCC-----CcccccEE
Confidence 111 344555555553 2222211 13466666
Q ss_pred EeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEE
Q 040332 773 WIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQ 852 (1210)
Q Consensus 773 ~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 852 (1210)
++++|... .+ | .+..+++|+.|++++|. +..++.. .++|++|+
T Consensus 179 ~L~~n~l~-~l-------~-----------------------~~~~l~~L~~L~l~~N~-l~~l~~~-----~~~L~~L~ 221 (454)
T 1jl5_A 179 AAGNNQLE-EL-------P-----------------------ELQNLPFLTAIYADNNS-LKKLPDL-----PLSLESIV 221 (454)
T ss_dssp ECCSSCCS-SC-------C-----------------------CCTTCTTCCEEECCSSC-CSSCCCC-----CTTCCEEE
T ss_pred ECcCCcCC-cC-------c-----------------------cccCCCCCCEEECCCCc-CCcCCCC-----cCcccEEE
Confidence 66665321 11 0 12234566677776654 2233221 24677777
Q ss_pred EeccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccc
Q 040332 853 IWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLME 932 (1210)
Q Consensus 853 l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~ 932 (1210)
+++|. +..++ .+..+++|++|+++++ +++.++.. +++|+.|++++| .+..+|
T Consensus 222 l~~n~-l~~lp----------~~~~l~~L~~L~l~~N-~l~~l~~~------~~~L~~L~l~~N-~l~~l~--------- 273 (454)
T 1jl5_A 222 AGNNI-LEELP----------ELQNLPFLTTIYADNN-LLKTLPDL------PPSLEALNVRDN-YLTDLP--------- 273 (454)
T ss_dssp CCSSC-CSSCC----------CCTTCTTCCEEECCSS-CCSSCCSC------CTTCCEEECCSS-CCSCCC---------
T ss_pred CcCCc-CCccc----------ccCCCCCCCEEECCCC-cCCccccc------ccccCEEECCCC-cccccC---------
Confidence 77664 44441 2445666777777663 44444432 466666666666 333331
Q ss_pred cccccCCcceeeeccccccccccccccccceEeeeccccc
Q 040332 933 KGQVFPSLEELSVDVKHIAAINKCQLFREDLLCKLKCLDV 972 (1210)
Q Consensus 933 ~~~~~~sL~~L~l~~~~~~~~~~~~~l~~L~~L~l~c~~l 972 (1210)
..+++|+.|++++|.+...... .++|+.|+++.|.+
T Consensus 274 --~~~~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 274 --ELPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEI 309 (454)
T ss_dssp --CCCTTCCEEECCSSCCSEESCC--CTTCCEEECCSSCC
T ss_pred --cccCcCCEEECcCCccCcccCc--CCcCCEEECcCCcC
Confidence 2245666666666665543221 24555555544444
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=5.7e-23 Score=241.76 Aligned_cols=131 Identities=17% Similarity=0.029 Sum_probs=72.2
Q ss_pred CCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCC
Q 040332 820 KNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGD 899 (1210)
Q Consensus 820 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 899 (1210)
++|++|++++|. +..++. ++.+++|++|++++|. +..++. .+++|++|+++++ .+..++..
T Consensus 215 ~~L~~L~l~~n~-l~~lp~---~~~l~~L~~L~l~~N~-l~~l~~------------~~~~L~~L~l~~N-~l~~l~~~- 275 (454)
T 1jl5_A 215 LSLESIVAGNNI-LEELPE---LQNLPFLTTIYADNNL-LKTLPD------------LPPSLEALNVRDN-YLTDLPEL- 275 (454)
T ss_dssp TTCCEEECCSSC-CSSCCC---CTTCTTCCEEECCSSC-CSSCCS------------CCTTCCEEECCSS-CCSCCCCC-
T ss_pred CcccEEECcCCc-CCcccc---cCCCCCCCEEECCCCc-CCcccc------------cccccCEEECCCC-cccccCcc-
Confidence 356666666653 334432 3566677777776654 443311 2366777777663 45544432
Q ss_pred cccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeeccccccccccccccccceEeeecccccccCCccc
Q 040332 900 VNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINKCQLFREDLLCKLKCLDVEFGDERT 979 (1210)
Q Consensus 900 ~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~~~~l~~L~~L~l~c~~l~~~~~~~ 979 (1210)
+++|++|++++| .+..+ ...+++|+.|++++|.+..... ..++|+.|+++.|+++..+.
T Consensus 276 -----~~~L~~L~ls~N-~l~~l-----------~~~~~~L~~L~l~~N~l~~i~~--~~~~L~~L~Ls~N~l~~lp~-- 334 (454)
T 1jl5_A 276 -----PQSLTFLDVSEN-IFSGL-----------SELPPNLYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIELPA-- 334 (454)
T ss_dssp -----CTTCCEEECCSS-CCSEE-----------SCCCTTCCEEECCSSCCSEECC--CCTTCCEEECCSSCCSCCCC--
T ss_pred -----cCcCCEEECcCC-ccCcc-----------cCcCCcCCEEECcCCcCCcccC--CcCcCCEEECCCCccccccc--
Confidence 466777777766 34332 1223567777777776654332 12467777775566642111
Q ss_pred cccchhHHHHHhcccceEEEE
Q 040332 980 SILSLDDFLQRFHAMKVLKIV 1000 (1210)
Q Consensus 980 ~~~~~~~~~~~l~~L~~L~i~ 1000 (1210)
.+++|+.|+++
T Consensus 335 ----------~~~~L~~L~L~ 345 (454)
T 1jl5_A 335 ----------LPPRLERLIAS 345 (454)
T ss_dssp ----------CCTTCCEEECC
T ss_pred ----------cCCcCCEEECC
Confidence 14667777776
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=2.6e-22 Score=238.84 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=77.3
Q ss_pred cCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCC
Q 040332 819 EKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTG 898 (1210)
Q Consensus 819 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~ 898 (1210)
+++|+.|++++|.. ..+++ +..+++|+.|++++|. +..+. .+..+++|+.|+++++ .+..++.
T Consensus 242 l~~L~~L~l~~n~l-~~~~~---~~~l~~L~~L~l~~n~-l~~~~----------~~~~l~~L~~L~L~~n-~l~~~~~- 304 (466)
T 1o6v_A 242 LTNLTDLDLANNQI-SNLAP---LSGLTKLTELKLGANQ-ISNIS----------PLAGLTALTNLELNEN-QLEDISP- 304 (466)
T ss_dssp CTTCSEEECCSSCC-CCCGG---GTTCTTCSEEECCSSC-CCCCG----------GGTTCTTCSEEECCSS-CCSCCGG-
T ss_pred CCCCCEEECCCCcc-ccchh---hhcCCCCCEEECCCCc-cCccc----------cccCCCccCeEEcCCC-cccCchh-
Confidence 35566666665532 22222 3455666666666554 33321 1344566666666653 3443332
Q ss_pred CcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeeccccccccccccccccceEeeecccccccCCcc
Q 040332 899 DVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINKCQLFREDLLCKLKCLDVEFGDER 978 (1210)
Q Consensus 899 ~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~~~~l~~L~~L~l~c~~l~~~~~~ 978 (1210)
+..+++|+.|++++| .+...++ ...+++|+.|++++|.+........+++|+.|+++.|.++.
T Consensus 305 ---~~~l~~L~~L~L~~n-~l~~~~~---------~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~---- 367 (466)
T 1o6v_A 305 ---ISNLKNLTYLTLYFN-NISDISP---------VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD---- 367 (466)
T ss_dssp ---GGGCTTCSEEECCSS-CCSCCGG---------GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB----
T ss_pred ---hcCCCCCCEEECcCC-cCCCchh---------hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCc----
Confidence 234566666666666 3333211 23456666666666666655555566667777775555531
Q ss_pred ccccchhHHHHHhcccceEEEEcccc
Q 040332 979 TSILSLDDFLQRFHAMKVLKIVGECY 1004 (1210)
Q Consensus 979 ~~~~~~~~~~~~l~~L~~L~i~~~c~ 1004 (1210)
..+ +..+++|+.|+++ +|+
T Consensus 368 ----~~~--~~~l~~L~~L~l~-~n~ 386 (466)
T 1o6v_A 368 ----LTP--LANLTRITQLGLN-DQA 386 (466)
T ss_dssp ----CGG--GTTCTTCCEEECC-CEE
T ss_pred ----cch--hhcCCCCCEEecc-CCc
Confidence 111 5567777777777 554
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.8e-22 Score=238.73 Aligned_cols=132 Identities=23% Similarity=0.299 Sum_probs=94.4
Q ss_pred CcceEEEecCcccccC-CccccCCCCCcEEEecCccCCC---CCCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEe
Q 040332 550 IQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD---ISGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLD 624 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~ 624 (1210)
++|++|++++|.+..+ |..+.++++|++|++++|.+.. +..|.++++|++|++++|.+..+ |..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6788888888888765 6677888888888888887754 45578888888888888877766 66778888888888
Q ss_pred cCCCCCCCc-cCh-hhhcCCCcccEEEccCCCCccccccccccCccc-cccCCCCCEEEeeccCCCCC
Q 040332 625 LRDCSKLEV-IPP-HILSNLSHLEELNIGDNSFYHWEVEVDGVKNAS-LNELKHLTSLQLRIKDINCL 689 (1210)
Q Consensus 625 l~~~~~~~~-~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~-l~~L~~L~~L~l~~~~~~~~ 689 (1210)
+++| .+.. +|. ..++++++|++|++++|.+ .+..+.. +..+++|+.|++++|.+...
T Consensus 110 L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 110 LTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNI-------KKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp CTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBC-------CSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred CCCC-CCCccccCcccccCcccCCEEECCCCcc-------CccCcccccCCCCcccEEeCCCCccccc
Confidence 8887 4443 222 2357788888888887766 2233333 67778888888877766544
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.6e-21 Score=224.81 Aligned_cols=304 Identities=17% Similarity=0.186 Sum_probs=160.8
Q ss_pred CCcceEEEecCcccccCCcc-ccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEe
Q 040332 549 MIQVRVINLSYVDLLSLPSS-LVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLD 624 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~ 624 (1210)
+.++++|+++++.+..+|.. +..+++|++|++++|.+.. +..|+.+++|++|++++|.+..+|. .++++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34555555555555555544 3455555555555555554 2345555555555555555555433 345555555555
Q ss_pred cCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEE
Q 040332 625 LRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRIL 704 (1210)
Q Consensus 625 l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~ 704 (1210)
+++| .+..+|..+++++++|++|++++|.+ .+..+..+..+++|+.|++++|.+..++..
T Consensus 124 L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------ 183 (390)
T 3o6n_A 124 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNL-------ERIEDDTFQATTSLQNLQLSSNRLTHVDLS------------ 183 (390)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-------CBCCTTTTSSCTTCCEEECCSSCCSBCCGG------------
T ss_pred CCCC-ccCcCCHHHhcCCCCCcEEECCCCcc-------CccChhhccCCCCCCEEECCCCcCCccccc------------
Confidence 5555 45555555445555555555555544 122333455555555555555554433211
Q ss_pred EcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCccccccc
Q 040332 705 IGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDAL 784 (1210)
Q Consensus 705 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~ 784 (1210)
.+++|+.|++++. ....+ ...++|++|+++++.... ++
T Consensus 184 --------------------------------~l~~L~~L~l~~n---~l~~~------~~~~~L~~L~l~~n~l~~-~~ 221 (390)
T 3o6n_A 184 --------------------------------LIPSLFHANVSYN---LLSTL------AIPIAVEELDASHNSINV-VR 221 (390)
T ss_dssp --------------------------------GCTTCSEEECCSS---CCSEE------ECCSSCSEEECCSSCCCE-EE
T ss_pred --------------------------------cccccceeecccc---ccccc------CCCCcceEEECCCCeeee-cc
Confidence 0233444444432 11111 113566666666653211 10
Q ss_pred CCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceec
Q 040332 785 NSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIV 864 (1210)
Q Consensus 785 ~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 864 (1210)
. ...++|+.|+++++.. ... ..++.+++|++|++++|. +..+.
T Consensus 222 -----------------------------~--~~~~~L~~L~l~~n~l-~~~---~~l~~l~~L~~L~Ls~n~-l~~~~- 264 (390)
T 3o6n_A 222 -----------------------------G--PVNVELTILKLQHNNL-TDT---AWLLNYPGLVEVDLSYNE-LEKIM- 264 (390)
T ss_dssp -----------------------------C--CCCSSCCEEECCSSCC-CCC---GGGGGCTTCSEEECCSSC-CCEEE-
T ss_pred -----------------------------c--cccccccEEECCCCCC-ccc---HHHcCCCCccEEECCCCc-CCCcC-
Confidence 0 0125667777766543 222 234667777777777765 44442
Q ss_pred cccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceee
Q 040332 865 VDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELS 944 (1210)
Q Consensus 865 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~ 944 (1210)
+..+..+++|++|++++ .+++.++.. ...+|+|++|++++| .+..+|. ....+++|+.|+
T Consensus 265 -------~~~~~~l~~L~~L~L~~-n~l~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~--------~~~~l~~L~~L~ 324 (390)
T 3o6n_A 265 -------YHPFVKMQRLERLYISN-NRLVALNLY---GQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLY 324 (390)
T ss_dssp -------SGGGTTCSSCCEEECCS-SCCCEEECS---SSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEE
T ss_pred -------hhHccccccCCEEECCC-CcCcccCcc---cCCCCCCCEEECCCC-cceecCc--------cccccCcCCEEE
Confidence 23455677777777777 355555443 234677777777777 4444432 123467777777
Q ss_pred eccccccccccccccccceEeeeccccc
Q 040332 945 VDVKHIAAINKCQLFREDLLCKLKCLDV 972 (1210)
Q Consensus 945 l~~~~~~~~~~~~~l~~L~~L~l~c~~l 972 (1210)
+++|.+.... ...+++|+.|+++.|.+
T Consensus 325 L~~N~i~~~~-~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 325 LDHNSIVTLK-LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCSSCCCCCC-CCTTCCCSEEECCSSCE
T ss_pred CCCCccceeC-chhhccCCEEEcCCCCc
Confidence 7777765543 44566677777655555
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=4.6e-21 Score=219.12 Aligned_cols=306 Identities=19% Similarity=0.214 Sum_probs=199.9
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEec
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDL 625 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 625 (1210)
+..++.|+.|+++++.+..+|. +..+++|++|++++|.+...+.+.++++|++|++++|.+..+| .+.++++|++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 4567778888888888777764 7778888888888887777333778888888888888777765 5777888888888
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEE
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILI 705 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~ 705 (1210)
++| .+..++. +..+++|++|++++|... .....+..+++|+.|+++++.+..++.-
T Consensus 118 ~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~--------~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------- 173 (347)
T 4fmz_A 118 NED-NISDISP--LANLTKMYSLNLGANHNL--------SDLSPLSNMTGLNYLTVTESKVKDVTPI------------- 173 (347)
T ss_dssp TTS-CCCCCGG--GTTCTTCCEEECTTCTTC--------CCCGGGTTCTTCCEEECCSSCCCCCGGG-------------
T ss_pred cCC-cccCchh--hccCCceeEEECCCCCCc--------ccccchhhCCCCcEEEecCCCcCCchhh-------------
Confidence 877 6666665 577888888888877542 2233477777888888777766544321
Q ss_pred cccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccccC
Q 040332 706 GDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALN 785 (1210)
Q Consensus 706 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~ 785 (1210)
..+++|+.|+++++ ....+.. + ..+++|+.|++++|.....
T Consensus 174 ------------------------------~~l~~L~~L~l~~n---~l~~~~~-~--~~l~~L~~L~l~~n~l~~~--- 214 (347)
T 4fmz_A 174 ------------------------------ANLTDLYSLSLNYN---QIEDISP-L--ASLTSLHYFTAYVNQITDI--- 214 (347)
T ss_dssp ------------------------------GGCTTCSEEECTTS---CCCCCGG-G--GGCTTCCEEECCSSCCCCC---
T ss_pred ------------------------------ccCCCCCEEEccCC---ccccccc-c--cCCCccceeecccCCCCCC---
Confidence 11455666666654 2222222 1 2367777777777643210
Q ss_pred CcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceecc
Q 040332 786 SAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVV 865 (1210)
Q Consensus 786 ~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 865 (1210)
..+..+++|++|++++|.. ..+++ +..+++|++|++++|. +..+
T Consensus 215 ----------------------------~~~~~~~~L~~L~l~~n~l-~~~~~---~~~l~~L~~L~l~~n~-l~~~--- 258 (347)
T 4fmz_A 215 ----------------------------TPVANMTRLNSLKIGNNKI-TDLSP---LANLSQLTWLEIGTNQ-ISDI--- 258 (347)
T ss_dssp ----------------------------GGGGGCTTCCEEECCSSCC-CCCGG---GTTCTTCCEEECCSSC-CCCC---
T ss_pred ----------------------------chhhcCCcCCEEEccCCcc-CCCcc---hhcCCCCCEEECCCCc-cCCC---
Confidence 0023446788888877643 33333 4677888888888875 5444
Q ss_pred ccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeee
Q 040332 866 DDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSV 945 (1210)
Q Consensus 866 ~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l 945 (1210)
..+..+++|++|+++++ .+..++. +..+++|++|++++|+ +...+ +.....+++|+.|++
T Consensus 259 -------~~~~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~L~~n~-l~~~~-------~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 259 -------NAVKDLTKLKMLNVGSN-QISDISV----LNNLSQLNSLFLNNNQ-LGNED-------MEVIGGLTNLTTLFL 318 (347)
T ss_dssp -------GGGTTCTTCCEEECCSS-CCCCCGG----GGGCTTCSEEECCSSC-CCGGG-------HHHHHTCTTCSEEEC
T ss_pred -------hhHhcCCCcCEEEccCC-ccCCChh----hcCCCCCCEEECcCCc-CCCcC-------hhHhhccccCCEEEc
Confidence 23456788888888875 5555532 4557888888888884 33321 112334788888888
Q ss_pred ccccccccccccccccceEeeeccccc
Q 040332 946 DVKHIAAINKCQLFREDLLCKLKCLDV 972 (1210)
Q Consensus 946 ~~~~~~~~~~~~~l~~L~~L~l~c~~l 972 (1210)
++|.+....+...+++|+.|+++.|.+
T Consensus 319 ~~n~l~~~~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 319 SQNHITDIRPLASLSKMDSADFANQVI 345 (347)
T ss_dssp CSSSCCCCGGGGGCTTCSEESSSCC--
T ss_pred cCCccccccChhhhhccceeehhhhcc
Confidence 888877777766777777777755554
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=5.1e-21 Score=229.01 Aligned_cols=125 Identities=23% Similarity=0.340 Sum_probs=96.8
Q ss_pred eEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEecCCCC
Q 040332 553 RVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDLRDCS 629 (1210)
Q Consensus 553 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 629 (1210)
+.++++++.+..+|..+. .+|++|+|++|.+.. +..|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence 567888888888887664 588899999988887 56788899999999998888877 667888899999999888
Q ss_pred CCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 630 KLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 630 ~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
.+..+|...++++++|++|++++|.+ ....+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i-------~~~~~~~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKI-------VILLDYMFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCC-------CEECTTTTTTCTTCCEEEECCTTCC
T ss_pred cCCccCcccccCCCCCCEEECCCCcc-------ccCChhHccccccCCEEECCCCccc
Confidence 78888877778888888888888866 2234455666666666666655443
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=3.6e-21 Score=229.15 Aligned_cols=379 Identities=17% Similarity=0.225 Sum_probs=239.3
Q ss_pred EEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccc-cC-CccccCCCCCcEEEecCc
Q 040332 506 IVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLL-SL-PSSLVLLSNLRTLSLYYC 583 (1210)
Q Consensus 506 l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~i~~l~~L~~L~L~~~ 583 (1210)
+...+..+..+|.+ .++++.|.+..+. ...++...|.++++|++|++++|.+. .+ |..+..+++|++|++++|
T Consensus 15 ~~c~~~~l~~lp~l--~~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 15 AICINRGLHQVPEL--PAHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EECCSSCCSSCCCC--CTTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cCcCCCCcccCCCC--CCccCEEEecCCc---cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 44444555566652 2667777554433 23455566889999999999999886 44 567899999999999999
Q ss_pred cCCC--CCCCCCCCCCcEEEeecCCCcc-cCcc--cCCCCCCCEEecCCCCCCCcc-ChhhhcCCCcccEEEccCCCCcc
Q 040332 584 KLLD--ISGIGDLKKLEFLCLRGCDIRQ-LPIE--VGELICLKLLDLRDCSKLEVI-PPHILSNLSHLEELNIGDNSFYH 657 (1210)
Q Consensus 584 ~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~-p~~~l~~L~~L~~L~l~~n~~~~ 657 (1210)
.+.. |..|+++++|++|++++|.+.. .|.. ++++++|++|++++| .+..+ |...++++++|++|++++|.+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l-- 166 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKV-- 166 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCB--
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcc--
Confidence 9887 6779999999999999999885 4444 899999999999998 55555 555478999999999999876
Q ss_pred ccccccccCccccccC--CCCCEEEeeccCCCCCCCcc-ccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHH
Q 040332 658 WEVEVDGVKNASLNEL--KHLTSLQLRIKDINCLPRGL-FFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVL 734 (1210)
Q Consensus 658 ~~~~~~~~~~~~l~~L--~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 734 (1210)
.+..+..+..+ .+|+.|+++++.+..++... ...... .
T Consensus 167 -----~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~----------------------------------~ 207 (455)
T 3v47_A 167 -----KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG----------------------------------N 207 (455)
T ss_dssp -----SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC----------------------------------C
T ss_pred -----cccChhhhhccccccccccccccCcccccchhhccccccc----------------------------------c
Confidence 33445566665 57888999888877665431 000000 0
Q ss_pred HHHhccccEEeecccccccchh-hhhhhhh-cccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcc
Q 040332 735 IVQLQGIEHLGLYGLQEHDVES-FANELVK-VGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINI 812 (1210)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~ 812 (1210)
...+++|+.|+++++ .+.. .+..+.. ...++|+.|+++++........ ...++...... +..
T Consensus 208 ~~~~~~L~~L~Ls~n---~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~--~~~---------- 271 (455)
T 3v47_A 208 PFKNTSITTLDLSGN---GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPDNFT--FKG---------- 271 (455)
T ss_dssp TTTTCEEEEEECTTS---CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCCTTT--TGG----------
T ss_pred ccccceeeeEecCCC---cccccchhhhhccccccceeeEeeccccccccccc-hhhhccCcccc--ccc----------
Confidence 001356778888775 2222 2222211 1237888888888754332110 01111111111 000
Q ss_pred cccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCccc
Q 040332 813 SNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKL 892 (1210)
Q Consensus 813 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 892 (1210)
...++|+.|++++|..... .+ ..++.+++|++|++++|. +..+. +..+..+++|++|+++++ .+
T Consensus 272 ----~~~~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~Ls~n~-l~~~~--------~~~~~~l~~L~~L~Ls~N-~l 335 (455)
T 3v47_A 272 ----LEASGVKTCDLSKSKIFAL-LK-SVFSHFTDLEQLTLAQNE-INKID--------DNAFWGLTHLLKLNLSQN-FL 335 (455)
T ss_dssp ----GTTSCCCEEECCSSCCCEE-CT-TTTTTCTTCCEEECTTSC-CCEEC--------TTTTTTCTTCCEEECCSS-CC
T ss_pred ----ccccCceEEEecCcccccc-ch-hhcccCCCCCEEECCCCc-ccccC--------hhHhcCcccCCEEECCCC-cc
Confidence 1126788888888654433 22 234677888888888776 55442 234556788888888874 45
Q ss_pred ccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeecccccccccc--ccccccceEeeeccc
Q 040332 893 TSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINK--CQLFREDLLCKLKCL 970 (1210)
Q Consensus 893 ~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~--~~~l~~L~~L~l~c~ 970 (1210)
..+.... +..+++|++|++++| .+...+ +.....+++|+.|++++|.+...++ ...+++|+.|+++.|
T Consensus 336 ~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 336 GSIDSRM--FENLDKLEVLDLSYN-HIRALG-------DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEECGGG--GTTCTTCCEEECCSS-CCCEEC-------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcChhH--hcCcccCCEEECCCC-cccccC-------hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 5543321 445777888888777 344331 1223446777777777777665544 235566666666555
Q ss_pred ccc
Q 040332 971 DVE 973 (1210)
Q Consensus 971 ~l~ 973 (1210)
.++
T Consensus 406 ~l~ 408 (455)
T 3v47_A 406 PWD 408 (455)
T ss_dssp CBC
T ss_pred Ccc
Confidence 553
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.6e-21 Score=229.67 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=85.8
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEec
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDL 625 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 625 (1210)
+..+++|++|++++|.+..+| .++.+++|++|++++|.+...+ ++.+++|++|++++|.+..+| ++++++|++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 566777777777777777776 5777777777777777777643 777777777777777777765 777777777777
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeecc
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIK 684 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 684 (1210)
++| .+..+| ++++++|++|++++|.+. + . .++.+++|+.|++++|
T Consensus 114 ~~N-~l~~l~---~~~l~~L~~L~l~~N~l~-------~-l--~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 114 DTN-KLTKLD---VSQNPLLTYLNCARNTLT-------E-I--DVSHNTQLTELDCHLN 158 (457)
T ss_dssp CSS-CCSCCC---CTTCTTCCEEECTTSCCS-------C-C--CCTTCTTCCEEECTTC
T ss_pred CCC-cCCeec---CCCCCcCCEEECCCCccc-------e-e--ccccCCcCCEEECCCC
Confidence 777 566665 477777777777777652 1 1 3666777777777766
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=3.4e-21 Score=223.82 Aligned_cols=309 Identities=15% Similarity=0.183 Sum_probs=232.9
Q ss_pred CCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCc-cccCCCCCcEEEecCccCCC--CCCCCCCCC
Q 040332 520 VECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPS-SLVLLSNLRTLSLYYCKLLD--ISGIGDLKK 596 (1210)
Q Consensus 520 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~ 596 (1210)
..+++++.|.+.. +....+|..+|..+++|++|++++|.+..+|. .+..+++|++|++++|.+.. +..++++++
T Consensus 42 ~~l~~l~~l~l~~---~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKN---STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEES---CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCceEEEecC---CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 3456666664332 23446788889999999999999999998764 89999999999999999988 455899999
Q ss_pred CcEEEeecCCCcccCccc-CCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCC
Q 040332 597 LEFLCLRGCDIRQLPIEV-GELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKH 675 (1210)
Q Consensus 597 L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 675 (1210)
|++|++++|.+..+|..+ +++++|++|++++| .+..+++..++++++|++|++++|.+.. ..+..+++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~l~~ 187 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH----------VDLSLIPS 187 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB----------CCGGGCTT
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc----------cccccccc
Confidence 999999999999999874 89999999999998 7778877767999999999999987631 24677899
Q ss_pred CCEEEeeccCCCCCCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccch
Q 040332 676 LTSLQLRIKDINCLPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVE 755 (1210)
Q Consensus 676 L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 755 (1210)
|+.|++++|.+..++. .++|+.|+++++ .+.
T Consensus 188 L~~L~l~~n~l~~~~~----------------------------------------------~~~L~~L~l~~n---~l~ 218 (390)
T 3o6n_A 188 LFHANVSYNLLSTLAI----------------------------------------------PIAVEELDASHN---SIN 218 (390)
T ss_dssp CSEEECCSSCCSEEEC----------------------------------------------CSSCSEEECCSS---CCC
T ss_pred cceeecccccccccCC----------------------------------------------CCcceEEECCCC---eee
Confidence 9999999887654321 245667777764 333
Q ss_pred hhhhhhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccc
Q 040332 756 SFANELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGC 835 (1210)
Q Consensus 756 ~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 835 (1210)
.+.. ..+++|+.|++++|.... . ..+..+++|++|+++++.. ..
T Consensus 219 ~~~~----~~~~~L~~L~l~~n~l~~-~------------------------------~~l~~l~~L~~L~Ls~n~l-~~ 262 (390)
T 3o6n_A 219 VVRG----PVNVELTILKLQHNNLTD-T------------------------------AWLLNYPGLVEVDLSYNEL-EK 262 (390)
T ss_dssp EEEC----CCCSSCCEEECCSSCCCC-C------------------------------GGGGGCTTCSEEECCSSCC-CE
T ss_pred eccc----cccccccEEECCCCCCcc-c------------------------------HHHcCCCCccEEECCCCcC-CC
Confidence 3321 125789999999875321 0 1223457899999998754 33
Q ss_pred cccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeec
Q 040332 836 LFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISR 915 (1210)
Q Consensus 836 l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~ 915 (1210)
+.+ ..+..+++|+.|++++|. +..+.. ....+|+|++|+++++ .+..++.. ...+++|++|++++
T Consensus 263 ~~~-~~~~~l~~L~~L~L~~n~-l~~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~~---~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 263 IMY-HPFVKMQRLERLYISNNR-LVALNL---------YGQPIPTLKVLDLSHN-HLLHVERN---QPQFDRLENLYLDH 327 (390)
T ss_dssp EES-GGGTTCSSCCEEECCSSC-CCEEEC---------SSSCCTTCCEEECCSS-CCCCCGGG---HHHHTTCSEEECCS
T ss_pred cCh-hHccccccCCEEECCCCc-CcccCc---------ccCCCCCCCEEECCCC-cceecCcc---ccccCcCCEEECCC
Confidence 333 235788999999999886 666532 3456899999999986 66666654 45689999999999
Q ss_pred CCCcccccccccccccccccccCCcceeeecccccccc
Q 040332 916 CPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAI 953 (1210)
Q Consensus 916 C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~ 953 (1210)
|+ +..++ ...+++|+.|++++|++...
T Consensus 328 N~-i~~~~----------~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 328 NS-IVTLK----------LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SC-CCCCC----------CCTTCCCSEEECCSSCEEHH
T ss_pred Cc-cceeC----------chhhccCCEEEcCCCCccch
Confidence 85 44432 45578999999999987653
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=9.7e-21 Score=216.44 Aligned_cols=285 Identities=20% Similarity=0.217 Sum_probs=184.7
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEec
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDL 625 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 625 (1210)
|..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.+.++++|++|++++|.+..+|. +..+++|++|++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEEC
Confidence 4567778888888887777766 77788888888888877776677788888888888887777766 777888888888
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEE
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILI 705 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~ 705 (1210)
++|.....++. ++.+++|++|++.+|.+. ....+..+++|+.|++++|.+..++...
T Consensus 140 ~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------ 196 (347)
T 4fmz_A 140 GANHNLSDLSP--LSNMTGLNYLTVTESKVK---------DVTPIANLTDLYSLSLNYNQIEDISPLA------------ 196 (347)
T ss_dssp TTCTTCCCCGG--GTTCTTCCEEECCSSCCC---------CCGGGGGCTTCSEEECTTSCCCCCGGGG------------
T ss_pred CCCCCcccccc--hhhCCCCcEEEecCCCcC---------CchhhccCCCCCEEEccCCccccccccc------------
Confidence 88755555554 577888888888877652 1122677788888888777766544311
Q ss_pred cccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccccC
Q 040332 706 GDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALN 785 (1210)
Q Consensus 706 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~ 785 (1210)
.+++|+.|.+.++ ....+.. ...+++|++|++++|.... ++
T Consensus 197 -------------------------------~l~~L~~L~l~~n---~l~~~~~---~~~~~~L~~L~l~~n~l~~-~~- 237 (347)
T 4fmz_A 197 -------------------------------SLTSLHYFTAYVN---QITDITP---VANMTRLNSLKIGNNKITD-LS- 237 (347)
T ss_dssp -------------------------------GCTTCCEEECCSS---CCCCCGG---GGGCTTCCEEECCSSCCCC-CG-
T ss_pred -------------------------------CCCccceeecccC---CCCCCch---hhcCCcCCEEEccCCccCC-Cc-
Confidence 1345555666553 2222222 1236788888888764321 10
Q ss_pred CcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceecc
Q 040332 786 SAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVV 865 (1210)
Q Consensus 786 ~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 865 (1210)
.+..+++|++|++++|. +..++ .+..+++|++|++++|. +..+
T Consensus 238 -----------------------------~~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~n~-l~~~--- 280 (347)
T 4fmz_A 238 -----------------------------PLANLSQLTWLEIGTNQ-ISDIN---AVKDLTKLKMLNVGSNQ-ISDI--- 280 (347)
T ss_dssp -----------------------------GGTTCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSSC-CCCC---
T ss_pred -----------------------------chhcCCCCCEEECCCCc-cCCCh---hHhcCCCcCEEEccCCc-cCCC---
Confidence 02344677888887764 33332 24677888888888875 5554
Q ss_pred ccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeee
Q 040332 866 DDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSV 945 (1210)
Q Consensus 866 ~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l 945 (1210)
..+..+++|++|++++|+ +....... +..+++|++|++++|+ +...++ ...+++|+.|++
T Consensus 281 -------~~~~~l~~L~~L~L~~n~-l~~~~~~~--l~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~l 340 (347)
T 4fmz_A 281 -------SVLNNLSQLNSLFLNNNQ-LGNEDMEV--IGGLTNLTTLFLSQNH-ITDIRP---------LASLSKMDSADF 340 (347)
T ss_dssp -------GGGGGCTTCSEEECCSSC-CCGGGHHH--HHTCTTCSEEECCSSS-CCCCGG---------GGGCTTCSEESS
T ss_pred -------hhhcCCCCCCEEECcCCc-CCCcChhH--hhccccCCEEEccCCc-cccccC---------hhhhhccceeeh
Confidence 134557888888888863 33332211 4457888888888885 444321 345788888888
Q ss_pred cccccc
Q 040332 946 DVKHIA 951 (1210)
Q Consensus 946 ~~~~~~ 951 (1210)
++|.+.
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 888654
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3e-21 Score=227.28 Aligned_cols=263 Identities=13% Similarity=0.098 Sum_probs=131.3
Q ss_pred ccceeEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEE
Q 040332 500 VKLYTSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLS 579 (1210)
Q Consensus 500 ~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 579 (1210)
...++++.+.++.+..++.+..+++|+.|.+..+.... ++ |..+++|++|++++|.+..+| ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~---~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT---LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC---CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe---Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 45567777777666555555555555555433332211 11 344555555555555555543 45555555555
Q ss_pred ecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCcccc
Q 040332 580 LYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWE 659 (1210)
Q Consensus 580 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~ 659 (1210)
+++|.+...+ ++.+++|++|++++|.++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+.
T Consensus 113 L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~--- 183 (457)
T 3bz5_A 113 CDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT--- 183 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC---
T ss_pred CCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc---
Confidence 5555554422 555555555555555555443 4555555555555554444442 344555555555555441
Q ss_pred ccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhc
Q 040332 660 VEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQ 739 (1210)
Q Consensus 660 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~ 739 (1210)
+ .+ +..+++|+.|++++|.+..++ +..++
T Consensus 184 ----~-l~--l~~l~~L~~L~l~~N~l~~~~--------------------------------------------l~~l~ 212 (457)
T 3bz5_A 184 ----E-LD--VSQNKLLNRLNCDTNNITKLD--------------------------------------------LNQNI 212 (457)
T ss_dssp ----C-CC--CTTCTTCCEEECCSSCCSCCC--------------------------------------------CTTCT
T ss_pred ----e-ec--cccCCCCCEEECcCCcCCeec--------------------------------------------cccCC
Confidence 1 11 444555555555555444331 01145
Q ss_pred cccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhccccccccc
Q 040332 740 GIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNE 819 (1210)
Q Consensus 740 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l 819 (1210)
+|+.|+++++ .+..++ ...+++|+.|++++|.... ++ .+.+++++.|. +. .
T Consensus 213 ~L~~L~Ls~N---~l~~ip----~~~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~--l~-----------------~ 263 (457)
T 3bz5_A 213 QLTFLDCSSN---KLTEID----VTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLH--CI-----------------Q 263 (457)
T ss_dssp TCSEEECCSS---CCSCCC----CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE--CT-----------------T
T ss_pred CCCEEECcCC---cccccC----ccccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEe--cc-----------------C
Confidence 6666666664 233322 1236777777777764322 21 12333333332 11 1
Q ss_pred CCcceEEeecCCCccccccchhhhhcccccEEEEecccccccee
Q 040332 820 KNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEII 863 (1210)
Q Consensus 820 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~ 863 (1210)
.+|+.|++++|.....++. +.+++|+.|++++|..++.++
T Consensus 264 n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEE
T ss_pred CCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceec
Confidence 3566666666665555432 456667777777666555553
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.1e-20 Score=231.89 Aligned_cols=126 Identities=21% Similarity=0.195 Sum_probs=63.8
Q ss_pred CCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCC
Q 040332 820 KNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGD 899 (1210)
Q Consensus 820 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 899 (1210)
++|+.|++++|... .. ..++.+++|+.|++++|. +..+. +..+..+++|+.|++++ +.+..++..
T Consensus 232 ~~L~~L~L~~n~l~-~~---~~l~~l~~L~~L~Ls~N~-l~~~~--------~~~~~~l~~L~~L~Ls~-N~l~~l~~~- 296 (597)
T 3oja_B 232 VELTILKLQHNNLT-DT---AWLLNYPGLVEVDLSYNE-LEKIM--------YHPFVKMQRLERLYISN-NRLVALNLY- 296 (597)
T ss_dssp SCCCEEECCSSCCC-CC---GGGGGCTTCSEEECCSSC-CCEEE--------SGGGTTCSSCCEEECTT-SCCCEEECS-
T ss_pred CCCCEEECCCCCCC-CC---hhhccCCCCCEEECCCCc-cCCCC--------HHHhcCccCCCEEECCC-CCCCCCCcc-
Confidence 35556666555322 21 224556666666666654 33331 23344556666666665 344444433
Q ss_pred cccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeeccccccccccccccccceEeeeccccc
Q 040332 900 VNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAAINKCQLFREDLLCKLKCLDV 972 (1210)
Q Consensus 900 ~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~~~~~~~l~~L~~L~l~c~~l 972 (1210)
...+|+|+.|++++| .+..+|. ....+++|+.|++++|.+... +...+++|+.|+++.|.+
T Consensus 297 --~~~l~~L~~L~Ls~N-~l~~i~~--------~~~~l~~L~~L~L~~N~l~~~-~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 297 --GQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp --SSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSSCCCCC-CCCTTCCCSEEECCSSCE
T ss_pred --cccCCCCcEEECCCC-CCCccCc--------ccccCCCCCEEECCCCCCCCc-ChhhcCCCCEEEeeCCCC
Confidence 234566666666665 3333321 123356666666666665443 234555566666644444
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=8.3e-21 Score=232.99 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=213.0
Q ss_pred CCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCC-ccccCCCCCcEEEecCccCCC--CCCCCCCCCCc
Q 040332 522 CPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLE 598 (1210)
Q Consensus 522 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 598 (1210)
+++++.+.+. .+....+|..+|.++++|++|++++|.+..+| ..|+.+++|++|+|++|.+.. |..|+++++|+
T Consensus 50 l~~l~~l~l~---~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFK---NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEES---SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEee---CCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4455555322 22334577777888888888888888888765 478888888888888888877 34578888888
Q ss_pred EEEeecCCCcccCccc-CCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCC
Q 040332 599 FLCLRGCDIRQLPIEV-GELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLT 677 (1210)
Q Consensus 599 ~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ 677 (1210)
+|++++|.+..+|..+ +++++|++|++++| .+..+++..++++++|++|++++|.+.. ..++.+++|+
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------~~~~~l~~L~ 195 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH----------VDLSLIPSLF 195 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB----------CCGGGCTTCS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC----------cChhhhhhhh
Confidence 8888888888887764 78888888888887 6667776667888888888888886621 1356677888
Q ss_pred EEEeeccCCCCCCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhh
Q 040332 678 SLQLRIKDINCLPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESF 757 (1210)
Q Consensus 678 ~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 757 (1210)
.|++++|.+..++. ..+|+.|+++++ .+..+
T Consensus 196 ~L~l~~n~l~~l~~----------------------------------------------~~~L~~L~ls~n---~l~~~ 226 (597)
T 3oja_B 196 HANVSYNLLSTLAI----------------------------------------------PIAVEELDASHN---SINVV 226 (597)
T ss_dssp EEECCSSCCSEEEC----------------------------------------------CTTCSEEECCSS---CCCEE
T ss_pred hhhcccCccccccC----------------------------------------------CchhheeeccCC---ccccc
Confidence 88888776553221 245666777664 23322
Q ss_pred hhhhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccc
Q 040332 758 ANELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLF 837 (1210)
Q Consensus 758 ~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 837 (1210)
... .+++|+.|++++|.... ...+..+++|+.|++++|... .++
T Consensus 227 ~~~----~~~~L~~L~L~~n~l~~-------------------------------~~~l~~l~~L~~L~Ls~N~l~-~~~ 270 (597)
T 3oja_B 227 RGP----VNVELTILKLQHNNLTD-------------------------------TAWLLNYPGLVEVDLSYNELE-KIM 270 (597)
T ss_dssp ECS----CCSCCCEEECCSSCCCC-------------------------------CGGGGGCTTCSEEECCSSCCC-EEE
T ss_pred ccc----cCCCCCEEECCCCCCCC-------------------------------ChhhccCCCCCEEECCCCccC-CCC
Confidence 221 24678888888875321 012335578899999887543 333
Q ss_pred cchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCC
Q 040332 838 SSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCP 917 (1210)
Q Consensus 838 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~ 917 (1210)
+ ..++.+++|+.|++++|. +..++ .....+|+|+.|+++++ .+..++.. +..+++|+.|++++|+
T Consensus 271 ~-~~~~~l~~L~~L~Ls~N~-l~~l~---------~~~~~l~~L~~L~Ls~N-~l~~i~~~---~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 271 Y-HPFVKMQRLERLYISNNR-LVALN---------LYGQPIPTLKVLDLSHN-HLLHVERN---QPQFDRLENLYLDHNS 335 (597)
T ss_dssp S-GGGTTCSSCCEEECTTSC-CCEEE---------CSSSCCTTCCEEECCSS-CCCCCGGG---HHHHTTCSEEECCSSC
T ss_pred H-HHhcCccCCCEEECCCCC-CCCCC---------cccccCCCCcEEECCCC-CCCccCcc---cccCCCCCEEECCCCC
Confidence 3 235788999999999876 66653 23456889999999985 56666654 4568999999999984
Q ss_pred CcccccccccccccccccccCCcceeeeccccccc
Q 040332 918 KFMVKYKRITNDLMEKGQVFPSLEELSVDVKHIAA 952 (1210)
Q Consensus 918 ~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~~~~~ 952 (1210)
+..++ ...+++|+.|++++|++..
T Consensus 336 -l~~~~----------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 336 -IVTLK----------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp -CCCCC----------CCTTCCCSEEECCSSCEEH
T ss_pred -CCCcC----------hhhcCCCCEEEeeCCCCCC
Confidence 44432 4557899999999988654
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=225.87 Aligned_cols=299 Identities=20% Similarity=0.258 Sum_probs=215.4
Q ss_pred CcceEEEecCcccccC-CccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEec
Q 040332 550 IQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDL 625 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 625 (1210)
..+++|++++|.+..+ |..|.++++|++|+|++|.+.. |..|+++++|++|++++|.+..+|.. +.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4678888988888876 4678888889999999888877 66788888999999988888888764 688888999999
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEE
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILI 705 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~ 705 (1210)
++| .+..+++..++++++|++|++++|.+ ....+..+..+++|+.|++++|.+..++..
T Consensus 112 s~n-~i~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------- 170 (477)
T 2id5_A 112 SEN-KIVILLDYMFQDLYNLKSLEVGDNDL-------VYISHRAFSGLNSLEQLTLEKCNLTSIPTE------------- 170 (477)
T ss_dssp TTS-CCCEECTTTTTTCTTCCEEEECCTTC-------CEECTTSSTTCTTCCEEEEESCCCSSCCHH-------------
T ss_pred CCC-ccccCChhHccccccCCEEECCCCcc-------ceeChhhccCCCCCCEEECCCCcCcccChh-------------
Confidence 888 66666666678888999999888876 234556788888888888888877765532
Q ss_pred cccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccccC
Q 040332 706 GDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALN 785 (1210)
Q Consensus 706 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~ 785 (1210)
.+..+++|+.|++.++ .+..+.... ...+++|++|++++|.....++.
T Consensus 171 ----------------------------~l~~l~~L~~L~l~~n---~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 171 ----------------------------ALSHLHGLIVLRLRHL---NINAIRDYS-FKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp ----------------------------HHTTCTTCCEEEEESC---CCCEECTTC-SCSCTTCCEEEEECCTTCCEECT
T ss_pred ----------------------------HhcccCCCcEEeCCCC---cCcEeChhh-cccCcccceeeCCCCccccccCc
Confidence 1122455666666664 222222211 12468899999988876544322
Q ss_pred CcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceecc
Q 040332 786 SAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVV 865 (1210)
Q Consensus 786 ~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 865 (1210)
. .....+|++|++++|. ++.++. ..+..+++|+.|+++++. +..+.
T Consensus 219 ~-----------------------------~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~-- 264 (477)
T 2id5_A 219 N-----------------------------CLYGLNLTSLSITHCN-LTAVPY-LAVRHLVYLRFLNLSYNP-ISTIE-- 264 (477)
T ss_dssp T-----------------------------TTTTCCCSEEEEESSC-CCSCCH-HHHTTCTTCCEEECCSSC-CCEEC--
T ss_pred c-----------------------------cccCccccEEECcCCc-ccccCH-HHhcCccccCeeECCCCc-CCccC--
Confidence 1 1122489999999874 455543 346789999999999987 66552
Q ss_pred ccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeee
Q 040332 866 DDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSV 945 (1210)
Q Consensus 866 ~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l 945 (1210)
+..+..+++|++|+++++ ++..+.... +..+++|+.|++++| .++.++.. ....+++|+.|++
T Consensus 265 ------~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~l~~L~~L~l 327 (477)
T 2id5_A 265 ------GSMLHELLRLQEIQLVGG-QLAVVEPYA--FRGLNYLRVLNVSGN-QLTTLEES-------VFHSVGNLETLIL 327 (477)
T ss_dssp ------TTSCTTCTTCCEEECCSS-CCSEECTTT--BTTCTTCCEEECCSS-CCSCCCGG-------GBSCGGGCCEEEC
T ss_pred ------hhhccccccCCEEECCCC-ccceECHHH--hcCcccCCEEECCCC-cCceeCHh-------HcCCCcccCEEEc
Confidence 345667899999999984 566664432 567899999999998 66665332 2245789999999
Q ss_pred ccccccc
Q 040332 946 DVKHIAA 952 (1210)
Q Consensus 946 ~~~~~~~ 952 (1210)
++|++..
T Consensus 328 ~~N~l~c 334 (477)
T 2id5_A 328 DSNPLAC 334 (477)
T ss_dssp CSSCEEC
T ss_pred cCCCccC
Confidence 9998764
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=3.8e-21 Score=237.49 Aligned_cols=85 Identities=21% Similarity=0.133 Sum_probs=46.5
Q ss_pred cccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCccccccc
Q 040332 817 FNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFC 896 (1210)
Q Consensus 817 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 896 (1210)
..+++|+.|.++++. ...++ ..+..+++|++|++++|. +..... ...+..+|+|++|++.++-.-..+.
T Consensus 267 ~~~~~L~~L~l~~~~-~~~l~--~~~~~~~~L~~L~Ls~~~-l~~~~~-------~~~~~~~~~L~~L~L~~~~~~~~l~ 335 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG-PNEMP--ILFPFAAQIRKLDLLYAL-LETEDH-------CTLIQKCPNLEVLETRNVIGDRGLE 335 (592)
T ss_dssp CCCTTCCEEEETTCC-TTTGG--GGGGGGGGCCEEEETTCC-CCHHHH-------HHHHTTCTTCCEEEEEGGGHHHHHH
T ss_pred hccccccccCccccc-hhHHH--HHHhhcCCCcEEecCCCc-CCHHHH-------HHHHHhCcCCCEEeccCccCHHHHH
Confidence 344677777776642 22222 234567788888888776 432211 1123457788888877432111121
Q ss_pred CCCcccccCCCcceeeeec
Q 040332 897 TGDVNIIEFPSLKELRISR 915 (1210)
Q Consensus 897 ~~~~~~~~~~sL~~L~i~~ 915 (1210)
.. ...+++|++|++++
T Consensus 336 ~~---~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 336 VL---AQYCKQLKRLRIER 351 (592)
T ss_dssp HH---HHHCTTCCEEEEEC
T ss_pred HH---HHhCCCCCEEEeec
Confidence 11 23478888888885
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=1.4e-19 Score=223.54 Aligned_cols=259 Identities=13% Similarity=0.083 Sum_probs=135.9
Q ss_pred hhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccc
Q 040332 843 SSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVK 922 (1210)
Q Consensus 843 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~ 922 (1210)
..+++|+.|.+.++. ...+ +..+..+++|++|++++|. +........ ...+++|++|++.++ +...
T Consensus 267 ~~~~~L~~L~l~~~~-~~~l---------~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~-~~~~~~L~~L~L~~~--~~~~ 332 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG-PNEM---------PILFPFAAQIRKLDLLYAL-LETEDHCTL-IQKCPNLEVLETRNV--IGDR 332 (592)
T ss_dssp CCCTTCCEEEETTCC-TTTG---------GGGGGGGGGCCEEEETTCC-CCHHHHHHH-HTTCTTCCEEEEEGG--GHHH
T ss_pred hccccccccCccccc-hhHH---------HHHHhhcCCCcEEecCCCc-CCHHHHHHH-HHhCcCCCEEeccCc--cCHH
Confidence 455677777776542 2222 2233456777777777765 332211000 234677777777643 1111
Q ss_pred cccccccccccccccCCcceeeecc----------ccccccc---c-ccccccceEeeecccccccCCccccccchhHHH
Q 040332 923 YKRITNDLMEKGQVFPSLEELSVDV----------KHIAAIN---K-CQLFREDLLCKLKCLDVEFGDERTSILSLDDFL 988 (1210)
Q Consensus 923 ~~~~~~~l~~~~~~~~sL~~L~l~~----------~~~~~~~---~-~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~ 988 (1210)
.+......+++|++|++++ |+..+.. . ...+++|+.|+++|++++ ........
T Consensus 333 ------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~-------~~~~~~l~ 399 (592)
T 3ogk_B 333 ------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT-------NESLESIG 399 (592)
T ss_dssp ------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC-------HHHHHHHH
T ss_pred ------HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc-------HHHHHHHH
Confidence 1111223466777777773 3322111 1 124677777777777774 11223333
Q ss_pred HHhcccceEEEEccccccceeecccccchhhhhhhccccCcccccc-----ccccCcCcccEEEEecccc-cccc-CCC-
Q 040332 989 QRFHAMKVLKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILK-----QESSNMNNLVILHVIRCNN-LINL-VPS- 1060 (1210)
Q Consensus 989 ~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~-----~~l~~l~~L~~L~l~~c~~-L~~l-~~~- 1060 (1210)
..+++|+.|+++ .|. .|+.++..+. ..+..+++|+.|++++|.. +++. +..
T Consensus 400 ~~~~~L~~L~l~-~~~--------------------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 400 TYLKNLCDFRLV-LLD--------------------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp HHCCSCCEEEEE-ECS--------------------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred hhCCCCcEEEEe-ecC--------------------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 458888988887 222 2445554321 1134567788888877664 2221 111
Q ss_pred CccccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhcccccccccccccccccccccccccccccc
Q 040332 1061 SLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIVFSELKDLELCELKSMTSFC 1140 (1210)
Q Consensus 1061 ~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 1140 (1210)
...+++|+.|++++| ++........+..+++|+.|+|++|+ ++..... .....+++|++|+|++|+ ++...
T Consensus 459 ~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~------~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA------AAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp HHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH------HHHHHCSSCCEEEEESCB-CCTTC
T ss_pred HHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH------HHHHhcCccCeeECcCCc-CCHHH
Confidence 124677888888877 35443223345667788888888877 3221100 123467778888888876 55432
Q ss_pred cCCccccCCcccEEeecc
Q 040332 1141 SGHCAFKFPSLERILVND 1158 (1210)
Q Consensus 1141 ~~~~~~~~~sL~~L~i~~ 1158 (1210)
.......+|.|....+..
T Consensus 530 ~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 530 QDLMQMARPYWNIELIPS 547 (592)
T ss_dssp TTGGGGCCTTEEEEEECC
T ss_pred HHHHHHhCCCcEEEEecC
Confidence 222222346665555544
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=3.1e-19 Score=200.78 Aligned_cols=223 Identities=23% Similarity=0.357 Sum_probs=164.2
Q ss_pred cCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 548 RMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 548 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
....++.|++++|.+..+|..++++++|++|++++|.+.. |..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 3578999999999999999999999999999999999988 888999999999999999999999999999999999999
Q ss_pred CCCCCCccChhh--------hcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccC
Q 040332 627 DCSKLEVIPPHI--------LSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKL 698 (1210)
Q Consensus 627 ~~~~~~~~p~~~--------l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L 698 (1210)
+|...+.+|..+ ++++++|++|++++|.+. ..+..++.+++|+.|++++|.+..+|..
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~N~l~~l~~~------ 224 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--------SLPASIANLQNLKSLKIRNSPLSALGPA------ 224 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--------CCCGGGGGCTTCCEEEEESSCCCCCCGG------
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--------cchHhhcCCCCCCEEEccCCCCCcCchh------
Confidence 987888888764 123777777777777651 4455677777777777777666544421
Q ss_pred ceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCc
Q 040332 699 ERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCH 778 (1210)
Q Consensus 699 ~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 778 (1210)
+ ..+++|++|++++|.
T Consensus 225 --------------------------------------------------------------l--~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 225 --------------------------------------------------------------I--HHLPKLEELDLRGCT 240 (328)
T ss_dssp --------------------------------------------------------------G--GGCTTCCEEECTTCT
T ss_pred --------------------------------------------------------------h--ccCCCCCEEECcCCc
Confidence 1 124667777777665
Q ss_pred ccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEecccc
Q 040332 779 EAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPV 858 (1210)
Q Consensus 779 ~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~ 858 (1210)
....++ ..+..+++|++|++++|.....+|.. ++.+++|++|++++|..
T Consensus 241 ~~~~~p-----------------------------~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 241 ALRNYP-----------------------------PIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp TCCBCC-----------------------------CCTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTT
T ss_pred chhhhH-----------------------------HHhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCc
Confidence 543332 22334466777777776666655432 46677777777777776
Q ss_pred ccceeccccccccccccccccccceeeccc
Q 040332 859 LEEIIVVDDQEERNKNIVMFPQLQYLEMSN 888 (1210)
Q Consensus 859 l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~ 888 (1210)
++.+ +..+..+++|+.+.+..
T Consensus 290 ~~~i---------P~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 290 LSRL---------PSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCC---------CGGGGGSCTTCEEECCG
T ss_pred hhhc---------cHHHhhccCceEEeCCH
Confidence 6555 34555667777776654
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=6e-18 Score=191.43 Aligned_cols=134 Identities=20% Similarity=0.370 Sum_probs=104.0
Q ss_pred CcceEEEecCcccccCCc-cccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 550 IQVRVINLSYVDLLSLPS-SLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
+.|++|++++|.+..+|. .+.++++|++|++++|.+.. |..|+++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 467888888888887765 67888888888888888877 5678888888888888888888887665 688888888
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCC
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
+| .+..++...++++++|++|++++|.+.. .+..+..+..+++|+.|++++|.+..+|.
T Consensus 130 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 130 EN-EITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp SS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred CC-cccccCHhHhcCCccccEEECCCCcCCc-----cCcChhhccCCCCcCEEECCCCccccCCc
Confidence 87 6777777777888888888888876621 22445677788888888888887776654
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=3e-18 Score=194.06 Aligned_cols=131 Identities=20% Similarity=0.366 Sum_probs=66.8
Q ss_pred cceEEEecCcccccCC-ccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCC
Q 040332 551 QVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRD 627 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 627 (1210)
.|++|++++|.+..++ ..+.++++|++|++++|.+.. |..|+++++|++|++++|.+..+|..+. ++|++|++++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~ 132 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHD 132 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCS
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCC
Confidence 4555555555555442 345555555555555555554 3445555555555555555555555443 4555555555
Q ss_pred CCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCC
Q 040332 628 CSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 628 ~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
| .+..+|...++++++|++|++++|.+.. .+..+..+..+ +|+.|++++|.+..+|
T Consensus 133 n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 133 N-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-----SGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp S-CCCCCCSGGGSSCSSCCEEECCSCCCBG-----GGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred C-ccCccCHhHhCCCccCCEEECCCCcccc-----CCCCcccccCC-ccCEEECcCCCCCccC
Confidence 5 4455555444555555555555554411 11223334444 5555555555444443
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=2e-17 Score=187.10 Aligned_cols=126 Identities=24% Similarity=0.369 Sum_probs=109.0
Q ss_pred CCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-C-CCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEec
Q 040332 549 MIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-I-SGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDL 625 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l 625 (1210)
..++++++++++.+..+|..+. ++|++|++++|.+.. + ..|+++++|++|++++|.+..+ |..++++++|++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4478999999999999998765 689999999999998 4 4699999999999999999988 778999999999999
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
++| .+..+|..+ .++|++|++++|.+ .+..+..+..+++|+.|++++|.+.
T Consensus 108 s~n-~l~~l~~~~---~~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 108 SKN-QLKELPEKM---PKTLQELRVHENEI-------TKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp CSS-CCSBCCSSC---CTTCCEEECCSSCC-------CBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCC-cCCccChhh---cccccEEECCCCcc-------cccCHhHhcCCccccEEECCCCcCC
Confidence 998 788898764 38999999999877 2344556888999999999988765
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=2.8e-19 Score=220.86 Aligned_cols=165 Identities=10% Similarity=0.036 Sum_probs=93.4
Q ss_pred ccccceEeeecccccccCCccccccchhHHHHHhcccceEEEEccccccceeecccccchhhhhhhccccCcccccc---
Q 040332 958 LFREDLLCKLKCLDVEFGDERTSILSLDDFLQRFHAMKVLKIVGECYVGESEEKVENGMEVIIREANKCCDLKHILK--- 1034 (1210)
Q Consensus 958 ~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~c~~~~~~~~~~~~~~~~l~~l~~~~~L~~~~~--- 1034 (1210)
.+++|+.|.++|++++ ..........+++|+.|+++ .+. ...|+.++..+.
T Consensus 370 ~~~~L~~L~~~~~~l~-------~~~~~~l~~~~~~L~~L~L~-~~~------------------~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMT-------NAALITIARNRPNMTRFRLC-IIE------------------PKAPDYLTLEPLDIG 423 (594)
T ss_dssp HCTTCCEEEEEESCCC-------HHHHHHHHHHCTTCCEEEEE-ESS------------------TTCCCTTTCCCTHHH
T ss_pred hchhHHHHHHhcCCcC-------HHHHHHHHhhCCCcceeEee-ccc------------------CCCcccccCCchhhH
Confidence 3567777766777774 12223344568899999998 110 002444543221
Q ss_pred --ccccCcCcccEEEEecccccccc-CCCCc-cccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhh
Q 040332 1035 --QESSNMNNLVILHVIRCNNLINL-VPSSL-SFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLA 1110 (1210)
Q Consensus 1035 --~~l~~l~~L~~L~l~~c~~L~~l-~~~~~-~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~ 1110 (1210)
..+..+++|+.|++++ .+++. ++... .+++|+.|++++|. +...........+++|++|++++|+.-.....
T Consensus 424 ~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~- 499 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL- 499 (594)
T ss_dssp HHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH-
T ss_pred HHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH-
Confidence 1134567888888865 33331 11112 37889999998884 54443333346688899999998885222221
Q ss_pred cccccccccccccccccccccccccccccccCCccccCCcccEEeeccC
Q 040332 1111 VVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDC 1159 (1210)
Q Consensus 1111 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C 1159 (1210)
.....+++|+.|++++|+. +.-........+|.|+...+...
T Consensus 500 ------~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 500 ------ANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp ------HTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECSS
T ss_pred ------HHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecCC
Confidence 1245678888888888875 22111111113466665555543
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=8.1e-18 Score=188.11 Aligned_cols=130 Identities=23% Similarity=0.350 Sum_probs=97.0
Q ss_pred CcceEEEecCcccc---cCCccccCCCCCcEEEecC-ccCCC--CCCCCCCCCCcEEEeecCCCc-ccCcccCCCCCCCE
Q 040332 550 IQVRVINLSYVDLL---SLPSSLVLLSNLRTLSLYY-CKLLD--ISGIGDLKKLEFLCLRGCDIR-QLPIEVGELICLKL 622 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~---~lp~~i~~l~~L~~L~L~~-~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~ 622 (1210)
.+++.|+++++.+. .+|..+.++++|++|++++ |.+.. |..|+++++|++|++++|.+. .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46788888888877 4788888888888888884 66664 667888888888888888877 67777888888888
Q ss_pred EecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCC-CCCEEEeeccCCC
Q 040332 623 LDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELK-HLTSLQLRIKDIN 687 (1210)
Q Consensus 623 L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~ 687 (1210)
|++++|.....+|.. ++++++|++|++++|.+ .+..+..+..+. +|+.|++++|.+.
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l-------~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCC-------EEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcc-------cCcCCHHHhhhhhcCcEEECcCCeee
Confidence 888887333356655 57888888888887766 345566777776 7788877766554
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=8.4e-17 Score=182.07 Aligned_cols=264 Identities=18% Similarity=0.248 Sum_probs=179.2
Q ss_pred CcceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEecC
Q 040332 550 IQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDLR 626 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~ 626 (1210)
.++++++++++.+..+|..+. ++|++|++++|.+.. +..|+++++|++|++++|.+..+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 368999999999999998774 699999999999988 45799999999999999999987 6789999999999999
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCC--CCccccccCceeEEE
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCL--PRGLFFEKLERYRIL 704 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~--~~~~~~~~L~~l~~~ 704 (1210)
+| .+..+|..+ . ++|++|++++|.+ ....+..+..+++|+.|++++|.+... ... .+..
T Consensus 111 ~n-~l~~l~~~~-~--~~L~~L~l~~n~i-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~------- 171 (332)
T 2ft3_A 111 KN-HLVEIPPNL-P--SSLVELRIHDNRI-------RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDG------- 171 (332)
T ss_dssp SS-CCCSCCSSC-C--TTCCEEECCSSCC-------CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCS-------
T ss_pred CC-cCCccCccc-c--ccCCEEECCCCcc-------CccCHhHhCCCccCCEEECCCCccccCCCCcc-cccC-------
Confidence 98 788999865 3 8999999999977 234445688999999999999887531 111 0000
Q ss_pred EcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCccccccc
Q 040332 705 IGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDAL 784 (1210)
Q Consensus 705 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~ 784 (1210)
+ +|+.|+++++ ....++..+ +++|++|++++|......
T Consensus 172 ---------------------------------l-~L~~L~l~~n---~l~~l~~~~----~~~L~~L~l~~n~i~~~~- 209 (332)
T 2ft3_A 172 ---------------------------------L-KLNYLRISEA---KLTGIPKDL----PETLNELHLDHNKIQAIE- 209 (332)
T ss_dssp ---------------------------------C-CCSCCBCCSS---BCSSCCSSS----CSSCSCCBCCSSCCCCCC-
T ss_pred ---------------------------------C-ccCEEECcCC---CCCccCccc----cCCCCEEECCCCcCCccC-
Confidence 1 3455555553 233332221 367777777776432111
Q ss_pred CCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceec
Q 040332 785 NSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIV 864 (1210)
Q Consensus 785 ~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 864 (1210)
...+..+++|+.|+++++. +..+++ ..+..+++|+.|++++|. +..+
T Consensus 210 ----------------------------~~~l~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~l-- 256 (332)
T 2ft3_A 210 ----------------------------LEDLLRYSKLYRLGLGHNQ-IRMIEN-GSLSFLPTLRELHLDNNK-LSRV-- 256 (332)
T ss_dssp ----------------------------TTSSTTCTTCSCCBCCSSC-CCCCCT-TGGGGCTTCCEEECCSSC-CCBC--
T ss_pred ----------------------------HHHhcCCCCCCEEECCCCc-CCcCCh-hHhhCCCCCCEEECCCCc-Ceec--
Confidence 1223345677777777753 333333 224667777777777765 5544
Q ss_pred cccccccccccccccccceeecccCcccccccCCCcc----cccCCCcceeeeecCC
Q 040332 865 VDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVN----IIEFPSLKELRISRCP 917 (1210)
Q Consensus 865 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~----~~~~~sL~~L~i~~C~ 917 (1210)
+..+..+++|++|++++ +.++.++..... ...+++|+.|++.++|
T Consensus 257 -------p~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 257 -------PAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp -------CTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred -------ChhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCc
Confidence 23355677777777776 345555443210 0113556666666665
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=3.6e-17 Score=183.92 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=73.4
Q ss_pred CCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEE
Q 040332 571 LLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELN 649 (1210)
Q Consensus 571 ~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~ 649 (1210)
...++++|++++|.+.. |+.++++++|++|++++|.+..+|..++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEE
Confidence 35789999999999988 88899999999999999999999999999999999999998 67788877 58899999999
Q ss_pred ccCCCC
Q 040332 650 IGDNSF 655 (1210)
Q Consensus 650 l~~n~~ 655 (1210)
+++|..
T Consensus 157 L~~n~~ 162 (328)
T 4fcg_A 157 IRACPE 162 (328)
T ss_dssp EEEETT
T ss_pred CCCCCC
Confidence 987655
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=2e-16 Score=191.31 Aligned_cols=260 Identities=21% Similarity=0.160 Sum_probs=164.6
Q ss_pred CCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCC
Q 040332 549 MIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDC 628 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 628 (1210)
...+++|+++++.+..+|..+. ++|++|++++|.+...+. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 3458889999999998888776 789999999998888333 67889999999998888887 6788999999888
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEEccc
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILIGDF 708 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~ 708 (1210)
.+..+|. .+++|++|++++|.+. ..+. .+++|+.|++++|.+..+|..
T Consensus 112 -~l~~l~~----~l~~L~~L~L~~N~l~--------~lp~---~l~~L~~L~Ls~N~l~~l~~~---------------- 159 (622)
T 3g06_A 112 -PLTHLPA----LPSGLCKLWIFGNQLT--------SLPV---LPPGLQELSVSDNQLASLPAL---------------- 159 (622)
T ss_dssp -CCCCCCC----CCTTCCEEECCSSCCS--------CCCC---CCTTCCEEECCSSCCSCCCCC----------------
T ss_pred -cCCCCCC----CCCCcCEEECCCCCCC--------cCCC---CCCCCCEEECcCCcCCCcCCc----------------
Confidence 7777775 4688888999888763 1222 247888888888887766532
Q ss_pred ccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccccCCcc
Q 040332 709 WNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALNSAE 788 (1210)
Q Consensus 709 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~ 788 (1210)
+++|+.|.++++ .++.++ ..+++|+.|++++|... .++.
T Consensus 160 -----------------------------~~~L~~L~L~~N---~l~~l~-----~~~~~L~~L~Ls~N~l~-~l~~--- 198 (622)
T 3g06_A 160 -----------------------------PSELCKLWAYNN---QLTSLP-----MLPSGLQELSVSDNQLA-SLPT--- 198 (622)
T ss_dssp -----------------------------CTTCCEEECCSS---CCSCCC-----CCCTTCCEEECCSSCCS-CCCC---
T ss_pred -----------------------------cCCCCEEECCCC---CCCCCc-----ccCCCCcEEECCCCCCC-CCCC---
Confidence 234555555553 233322 12567777777765421 1110
Q ss_pred cccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceeccccc
Q 040332 789 SKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQ 868 (1210)
Q Consensus 789 ~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 868 (1210)
..++|+.|.+++|. +..++. .+++|+.|++++|. ++.++
T Consensus 199 -----------------------------~~~~L~~L~L~~N~-l~~l~~-----~~~~L~~L~Ls~N~-L~~lp----- 237 (622)
T 3g06_A 199 -----------------------------LPSELYKLWAYNNR-LTSLPA-----LPSGLKELIVSGNR-LTSLP----- 237 (622)
T ss_dssp -----------------------------CCTTCCEEECCSSC-CSSCCC-----CCTTCCEEECCSSC-CSCCC-----
T ss_pred -----------------------------ccchhhEEECcCCc-ccccCC-----CCCCCCEEEccCCc-cCcCC-----
Confidence 11456666666653 333332 23566666666654 44431
Q ss_pred cccccccccccccceeecccCcccccccCCCcccccCCCcceeeeecCCCcccccccccccccccccccCCcceeeeccc
Q 040332 869 EERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISRCPKFMVKYKRITNDLMEKGQVFPSLEELSVDVK 948 (1210)
Q Consensus 869 ~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~l~~~~~~~~sL~~L~l~~~ 948 (1210)
..+++|++|+++++ +++.++. .+++|+.|++++| ++..+|. ....+++|+.|++++|
T Consensus 238 -------~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~--------~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 238 -------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPE--------SLIHLSSETTVNLEGN 294 (622)
T ss_dssp -------CCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCG--------GGGGSCTTCEEECCSC
T ss_pred -------CCCCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCH--------HHhhccccCEEEecCC
Confidence 23466666666663 5555544 2566666666666 4444332 1233566666666666
Q ss_pred cccc
Q 040332 949 HIAA 952 (1210)
Q Consensus 949 ~~~~ 952 (1210)
.+..
T Consensus 295 ~l~~ 298 (622)
T 3g06_A 295 PLSE 298 (622)
T ss_dssp CCCH
T ss_pred CCCC
Confidence 5443
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=4.5e-19 Score=211.46 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=31.9
Q ss_pred CcceEEEecCcccccCC--ccccCCCCCcEEEecCccCCC------CCCCCCCCCCcEEEeecCCCc
Q 040332 550 IQVRVINLSYVDLLSLP--SSLVLLSNLRTLSLYYCKLLD------ISGIGDLKKLEFLCLRGCDIR 608 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~ 608 (1210)
++|+.|+++++.+...+ ..+..+++|++|++++|.+.. +..+..+++|++|++++|.+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 69 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 69 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC
Confidence 35666677666665332 224556666666666665542 233444555555555555544
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=1.6e-18 Score=214.22 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=76.8
Q ss_pred hhhcCCcceEEEecCccccc-CCcccc-CCCCCcEEEecCc-cCCC--CCC-CCCCCCCcEEEeecCCCcc-----cCcc
Q 040332 545 FFERMIQVRVINLSYVDLLS-LPSSLV-LLSNLRTLSLYYC-KLLD--ISG-IGDLKKLEFLCLRGCDIRQ-----LPIE 613 (1210)
Q Consensus 545 ~~~~l~~Lr~L~l~~~~~~~-lp~~i~-~l~~L~~L~L~~~-~~~~--~~~-i~~L~~L~~L~l~~~~l~~-----lp~~ 613 (1210)
++..+++|+.|+++++.+.. .+..+. .+++|++|++++| .+.. ++. +.++++|++|++++|.+.. ++..
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 34567778888888776652 233343 5778888888777 3333 223 3367778888877776443 3333
Q ss_pred cCCCCCCCEEecCCCCCCCccChh----hhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeec
Q 040332 614 VGELICLKLLDLRDCSKLEVIPPH----ILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRI 683 (1210)
Q Consensus 614 i~~l~~L~~L~l~~~~~~~~~p~~----~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 683 (1210)
...+++|++|++++|. ..+... ++.++++|++|++.+|... +..+..+..+++|+.|++..
T Consensus 180 ~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-------~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPL-------EKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCH-------HHHHHHHHHCTTCSEEECSB
T ss_pred hhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcH-------HHHHHHHhcCCcceEccccc
Confidence 3466677777777763 223222 2244577777777766321 12444556667777776553
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=5.1e-17 Score=181.61 Aligned_cols=175 Identities=18% Similarity=0.289 Sum_probs=102.6
Q ss_pred cceeEEEeccccccc---CC-CcCCCCchhHHHhhh-cCCCCcccccchhhhcCCcceEEEecCcccc-cCCccccCCCC
Q 040332 501 KLYTSIVLRDVKTNL---LP-ELVECPQLKLFLIHA-DKESPSLSIANNFFERMIQVRVINLSYVDLL-SLPSSLVLLSN 574 (1210)
Q Consensus 501 ~~~~~l~l~~~~~~~---l~-~~~~~~~Lr~L~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~ 574 (1210)
.+++++.+.++.+.. ++ .+.++++|+.|.+.. +... ...+..|.++++|++|++++|.+. .+|..+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE---SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc---ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 467788888777652 33 345566666664432 2111 112233566666666666666665 56666666666
Q ss_pred CcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCc-ccCcccCCCC-CCCEEecCCCCCCCccChhhhcCCCcccEEEc
Q 040332 575 LRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIR-QLPIEVGELI-CLKLLDLRDCSKLEVIPPHILSNLSHLEELNI 650 (1210)
Q Consensus 575 L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l 650 (1210)
|++|++++|.+.. |..++++++|++|++++|.+. .+|..+++++ +|++|++++|...+.+|.. ++.++ |++|++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~L 204 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDL 204 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEEC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEEC
Confidence 6666666666653 555666666666666666666 5666666665 6666666666322244443 35555 666666
Q ss_pred cCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 651 GDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 651 ~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
++|.+ .+..+..+..+++|+.|++++|.+.
T Consensus 205 s~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 205 SRNML-------EGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CSSEE-------EECCGGGCCTTSCCSEEECCSSEEC
T ss_pred cCCcc-------cCcCCHHHhcCCCCCEEECCCCcee
Confidence 66654 2334555666666666666666554
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.3e-16 Score=178.86 Aligned_cols=133 Identities=20% Similarity=0.282 Sum_probs=92.7
Q ss_pred CcceEEEecCcccccCCc-cccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEec
Q 040332 550 IQVRVINLSYVDLLSLPS-SLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDL 625 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 625 (1210)
++|++|++++|.+..+|. .+.++++|++|++++|.+.. +..|+++++|++|++++|.+..+|.. ++++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 367777777777777655 67777777777777777776 44577777777777777777777765 677777777777
Q ss_pred CCCCCCCccCh-hhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCC
Q 040332 626 RDCSKLEVIPP-HILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCL 689 (1210)
Q Consensus 626 ~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 689 (1210)
++| .+..+|. ..++++++|++|++++|... ....+..+..+++|+.|++++|.+..+
T Consensus 132 ~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~------~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 132 LGN-PYKTLGETSLFSHLTKLQILRVGNMDTF------TKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp TTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC------CEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCC-CCcccCchhhhccCCCCcEEECCCCccc------cccCHHHccCCCCCCEEECCCCCcCcc
Confidence 777 6666766 44577777777777766321 123345666777777777777766543
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=8.4e-16 Score=181.85 Aligned_cols=134 Identities=22% Similarity=0.282 Sum_probs=87.7
Q ss_pred CcceEEEecCcccccC-CccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEec
Q 040332 550 IQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDL 625 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 625 (1210)
..|++|+|++|.+..+ |..|.++++|++|+|++|.+.. +..|.++.+|++|++++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4567777777777755 4567777777777777777766 45577777777777777777766654 666777777777
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCC
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
++| .+..+|...+.++++|++|++++|... .......+..+++|+.|++++|.+..+|
T Consensus 155 ~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l------~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 155 RNN-PIESIPSYAFNRVPSLMRLDLGELKKL------EYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp CSC-CCCEECTTTTTTCTTCCEEECCCCTTC------CEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CCC-CcceeCHhHHhcCCcccEEeCCCCCCc------cccChhhccCCCCCCEEECCCCcccccc
Confidence 776 566666666677777777777764332 1122334666666666666666555443
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=5e-16 Score=177.36 Aligned_cols=127 Identities=22% Similarity=0.216 Sum_probs=108.8
Q ss_pred CCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CC-CCCCCCCCcEEEeecCCCcccC-cccCCCCCCCEEec
Q 040332 549 MIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-IS-GIGDLKKLEFLCLRGCDIRQLP-IEVGELICLKLLDL 625 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l 625 (1210)
+....+.+++++.++.+|..+. .+|++|++++|.+.. +. .+.++++|++|++++|.+..++ ..++++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 4455668999999999998776 599999999999998 44 7999999999999999999885 56999999999999
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCc-cccccCCCCCEEEeeccC
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKN-ASLNELKHLTSLQLRIKD 685 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~-~~l~~L~~L~~L~l~~~~ 685 (1210)
++| .+..+|...++++++|++|++++|.+. .... ..+..+++|+.|++++|.
T Consensus 108 s~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 108 SYN-YLSNLSSSWFKPLSSLTFLNLLGNPYK-------TLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp CSS-CCSSCCHHHHTTCTTCSEEECTTCCCS-------SSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCC-cCCcCCHhHhCCCccCCEEECCCCCCc-------ccCchhhhccCCCCcEEECCCCc
Confidence 998 888999887899999999999999772 2222 468889999999999873
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=1.5e-15 Score=179.00 Aligned_cols=122 Identities=25% Similarity=0.327 Sum_probs=76.5
Q ss_pred ceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccC-cccCCCCCCCEEecCCC
Q 040332 552 VRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLP-IEVGELICLKLLDLRDC 628 (1210)
Q Consensus 552 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~ 628 (1210)
.+.+++++..+..+|..+. .++++|+|++|.+.. +..|.++++|++|++++|.+..++ ..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3456666666666666554 466777777776666 455667777777777777666654 35666777777777766
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeec
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRI 683 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 683 (1210)
.+..+|...+..+++|++|++++|.+. ......+..+++|+.|++++
T Consensus 123 -~l~~~~~~~~~~l~~L~~L~L~~N~i~-------~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 123 -RLTTIPNGAFVYLSKLKELWLRNNPIE-------SIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp -CCSSCCTTTSCSCSSCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCC
T ss_pred -cCCeeCHhHhhccccCceeeCCCCccc-------ccCHHHhhhCcccCEeCCCC
Confidence 566666655666677777777666551 22333455556666665554
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=1.5e-15 Score=179.58 Aligned_cols=123 Identities=28% Similarity=0.317 Sum_probs=104.6
Q ss_pred cceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccC-cccCCCCCCCEEecCC
Q 040332 551 QVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLP-IEVGELICLKLLDLRD 627 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~ 627 (1210)
..+.+++++..+..+|..+. .+|++|+|++|.+.. +..|+++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35678899999999998765 699999999999988 677999999999999999999876 5789999999999999
Q ss_pred CCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeec
Q 040332 628 CSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRI 683 (1210)
Q Consensus 628 ~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 683 (1210)
| .+..+|...++.+++|++|++++|.+. ......+..+++|+.|+++.
T Consensus 133 n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 133 N-WLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp S-CCSBCCTTTSSSCTTCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCC
T ss_pred C-cCCccChhhhcccCCCCEEECCCCCcc-------eeCHhHHhcCCcccEEeCCC
Confidence 8 788999887899999999999998762 33445677788888888775
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=1.1e-15 Score=180.16 Aligned_cols=134 Identities=23% Similarity=0.318 Sum_probs=90.4
Q ss_pred CcceEEEecCcccccCC-ccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEec
Q 040332 550 IQVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDL 625 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l 625 (1210)
..+++|+|++|.+..++ ..+.++++|++|+|++|.+.. +..|.++.+|++|++++|.+..+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45677777777777654 567777777777777777766 4557777777777777777777765 4677777777777
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCC
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
++| .+..++...+.++++|++|++++|... .......+..+++|+.|++++|.+..+|
T Consensus 144 ~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l------~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 144 RNN-PIESIPSYAFNRIPSLRRLDLGELKRL------SYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CSC-CCCEECTTTTTTCTTCCEEECCCCTTC------CEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CCC-cccccCHHHhhhCcccCEeCCCCCCCc------ceeCcchhhcccccCeecCCCCcCcccc
Confidence 776 566777666677777777777764432 1223345666777777777766665444
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=8.1e-18 Score=200.59 Aligned_cols=354 Identities=18% Similarity=0.128 Sum_probs=206.8
Q ss_pred hhhhcCCcceEEEecCcccc-----cCCccccCCCCCcEEEecCccCCC--CCCC-CCCC----CCcEEEeecCCCc---
Q 040332 544 NFFERMIQVRVINLSYVDLL-----SLPSSLVLLSNLRTLSLYYCKLLD--ISGI-GDLK----KLEFLCLRGCDIR--- 608 (1210)
Q Consensus 544 ~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~--~~~i-~~L~----~L~~L~l~~~~l~--- 608 (1210)
.+|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.. +..+ ..+. +|++|++++|.+.
T Consensus 22 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 22 ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 34678899999999999987 568888999999999999998866 3333 2344 7999999999887
Q ss_pred --ccCcccCCCCCCCEEecCCCCCCCccC-----hhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEe
Q 040332 609 --QLPIEVGELICLKLLDLRDCSKLEVIP-----PHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQL 681 (1210)
Q Consensus 609 --~lp~~i~~l~~L~~L~l~~~~~~~~~p-----~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l 681 (1210)
.+|..+.++++|++|++++| .+.... .......++|++|++++|.+.... ....+..+..+++|+.|++
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS---CEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG---HHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH---HHHHHHHHhhCCCCCEEEC
Confidence 56888999999999999998 454322 122234678999999998763210 0123556777899999999
Q ss_pred eccCCCCCCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeeccccccc--chhhhh
Q 040332 682 RIKDINCLPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHD--VESFAN 759 (1210)
Q Consensus 682 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~ 759 (1210)
++|.+...... .+........++|+.|+++++.... ...+..
T Consensus 178 ~~n~i~~~~~~------------------------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 178 SNNDINEAGVR------------------------------------VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CSSBCHHHHHH------------------------------------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred cCCCcchHHHH------------------------------------HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 98765421100 0001111113477888887752111 111233
Q ss_pred hhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccc--
Q 040332 760 ELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLF-- 837 (1210)
Q Consensus 760 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-- 837 (1210)
.+. .+++|++|++++|..... ....+. .+....+++|++|++++|. ++...
T Consensus 222 ~l~--~~~~L~~L~Ls~n~l~~~---------~~~~l~---------------~~~~~~~~~L~~L~L~~n~-l~~~~~~ 274 (461)
T 1z7x_W 222 IVA--SKASLRELALGSNKLGDV---------GMAELC---------------PGLLHPSSRLRTLWIWECG-ITAKGCG 274 (461)
T ss_dssp HHH--HCTTCCEEECCSSBCHHH---------HHHHHH---------------HHHTSTTCCCCEEECTTSC-CCHHHHH
T ss_pred HHH--hCCCccEEeccCCcCChH---------HHHHHH---------------HHHhcCCCCceEEECcCCC-CCHHHHH
Confidence 332 367888888888742110 011111 1112235788888888874 33311
Q ss_pred -cchhhhhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCC--CcccccCCCcceeeee
Q 040332 838 -SSSIVSSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTG--DVNIIEFPSLKELRIS 914 (1210)
Q Consensus 838 -~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~--~~~~~~~~sL~~L~i~ 914 (1210)
....+..+++|++|++++|. +.......- ........++|++|++++|. +...... ...+..+++|++|+++
T Consensus 275 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l---~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 275 DLCRVLRAKESLKELSLAGNE-LGDEGARLL---CETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHCTTCCEEECTTCC-CHHHHHHHH---HHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHhhCCCcceEECCCCC-CchHHHHHH---HHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEcc
Confidence 01224567888888888775 432211000 00001123678888888764 3322100 0002345788888888
Q ss_pred cCCCccccccccccccccc-ccccCCcceeeeccccccc-----cc-cccccccceEeeecccccc
Q 040332 915 RCPKFMVKYKRITNDLMEK-GQVFPSLEELSVDVKHIAA-----IN-KCQLFREDLLCKLKCLDVE 973 (1210)
Q Consensus 915 ~C~~L~~~~~~~~~~l~~~-~~~~~sL~~L~l~~~~~~~-----~~-~~~~l~~L~~L~l~c~~l~ 973 (1210)
+| .+...... .+... ....++|+.|++++|.+.. .. ....+++|+.|+++.|.++
T Consensus 350 ~n-~i~~~~~~---~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 350 NN-RLEDAGVR---ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp SS-BCHHHHHH---HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CC-ccccccHH---HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 77 44432100 00000 1125678888888877653 11 1235677777777666663
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=3.5e-15 Score=180.46 Aligned_cols=117 Identities=24% Similarity=0.218 Sum_probs=67.5
Q ss_pred CcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCC
Q 040332 550 IQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCS 629 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 629 (1210)
++|++|++++|.+..+|. .+++|++|+|++|.+...+. .+++|++|++++|.+..+|. .+++|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N- 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN- 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS-
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC-
Confidence 456666666666666665 45666666666666655222 55666666666666666665 4556666666665
Q ss_pred CCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCC
Q 040332 630 KLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 630 ~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
.+..+|.. +++|++|++++|.+.. .+. .+.+|+.|++++|.+..+|
T Consensus 132 ~l~~lp~~----l~~L~~L~Ls~N~l~~--------l~~---~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 132 QLTSLPVL----PPGLQELSVSDNQLAS--------LPA---LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CCSCCCCC----CTTCCEEECCSSCCSC--------CCC---CCTTCCEEECCSSCCSCCC
T ss_pred CCCcCCCC----CCCCCEEECcCCcCCC--------cCC---ccCCCCEEECCCCCCCCCc
Confidence 55555542 3666666666665421 111 2345666666666665554
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=7.5e-17 Score=180.84 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=174.8
Q ss_pred ccchhhhcCCcceEEEecCcccccCC-ccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCC
Q 040332 541 IANNFFERMIQVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELIC 619 (1210)
Q Consensus 541 ~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~ 619 (1210)
.+...+..+++|++|++++|.+..++ ..+..+++|++|++++|.+.....+..+++|++|++++|.+..+|. .++
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~ 100 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPS 100 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----CCC
Confidence 34455677889999999999999875 6799999999999999999873349999999999999999888774 489
Q ss_pred CCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCc
Q 040332 620 LKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLE 699 (1210)
Q Consensus 620 L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~ 699 (1210)
|++|++++| .+..++. ..+++|++|++++|.+ .+..+..+..+++|+.|++++|.+..++.....
T Consensus 101 L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---- 165 (317)
T 3o53_A 101 IETLHAANN-NISRVSC---SRGQGKKNIYLANNKI-------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA---- 165 (317)
T ss_dssp CCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCC-------CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG----
T ss_pred cCEEECCCC-ccCCcCc---cccCCCCEEECCCCCC-------CCccchhhhccCCCCEEECCCCCCCcccHHHHh----
Confidence 999999998 7777775 4578899999999987 334456778889999999998887654322100
Q ss_pred eeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcc
Q 040332 700 RYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHE 779 (1210)
Q Consensus 700 ~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 779 (1210)
..+++|+.|+++++ .++.+.... .+++|++|++++|..
T Consensus 166 ------------------------------------~~l~~L~~L~L~~N---~l~~~~~~~---~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 166 ------------------------------------ASSDTLEHLNLQYN---FIYDVKGQV---VFAKLKTLDLSSNKL 203 (317)
T ss_dssp ------------------------------------GGTTTCCEEECTTS---CCCEEECCC---CCTTCCEEECCSSCC
T ss_pred ------------------------------------hccCcCCEEECCCC---cCccccccc---ccccCCEEECCCCcC
Confidence 11456666777664 333332111 257777777777643
Q ss_pred cccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccc
Q 040332 780 AHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVL 859 (1210)
Q Consensus 780 ~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l 859 (1210)
. .++ ..+..+++|+.|+++++. +..++.. +..+++|+.|++++++-.
T Consensus 204 ~-~l~-----------------------------~~~~~l~~L~~L~L~~N~-l~~l~~~--~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 204 A-FMG-----------------------------PEFQSAAGVTWISLRNNK-LVLIEKA--LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp C-EEC-----------------------------GGGGGGTTCSEEECTTSC-CCEECTT--CCCCTTCCEEECTTCCCB
T ss_pred C-cch-----------------------------hhhcccCcccEEECcCCc-ccchhhH--hhcCCCCCEEEccCCCcc
Confidence 2 111 112344677777777763 4444432 456777888888777622
Q ss_pred cceeccccccccccccccccccceeecccCcccccccC
Q 040332 860 EEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCT 897 (1210)
Q Consensus 860 ~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~ 897 (1210)
... .+..+..+++|+.|++.+++.++....
T Consensus 251 ~~~--------~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 251 CGT--------LRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHH--------HHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CcC--------HHHHHhccccceEEECCCchhccCCch
Confidence 111 123445577777777777666665544
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=9.3e-16 Score=171.39 Aligned_cols=126 Identities=22% Similarity=0.190 Sum_probs=64.6
Q ss_pred cceEEEecCcccccCCcc-ccCCCCCcEEEecCccCCC----CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEec
Q 040332 551 QVRVINLSYVDLLSLPSS-LVLLSNLRTLSLYYCKLLD----ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDL 625 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~----~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 625 (1210)
.|++|++++|.+..+|.. +.++++|++|++++|.+.. +..+..+.+|++|++++|.+..+|..+..+++|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 455555555555555543 3555555555555555543 23344455555555555555555555555555555555
Q ss_pred CCCCCCCccCh-hhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeecc
Q 040332 626 RDCSKLEVIPP-HILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIK 684 (1210)
Q Consensus 626 ~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 684 (1210)
++| .+..++. ..+.++++|++|++++|.+ .+..+..+..+++|+.|++++|
T Consensus 109 ~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 109 QHS-NLKQMSEFSVFLSLRNLIYLDISHTHT-------RVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp TTS-EEESSTTTTTTTTCTTCCEEECTTSCC-------EECSTTTTTTCTTCCEEECTTC
T ss_pred CCC-cccccccchhhhhccCCCEEECCCCcC-------CccchhhcccCcCCCEEECCCC
Confidence 555 3444433 2245555555555555543 1223333444444444444433
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=1.5e-15 Score=167.61 Aligned_cols=140 Identities=22% Similarity=0.300 Sum_probs=80.4
Q ss_pred ccchhhhcCCcceEEEecCcccccC-CccccCCCCCcEEEecCcc-CCC--CCCCCCCCCCcEEEeecCCCccc-CcccC
Q 040332 541 IANNFFERMIQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCK-LLD--ISGIGDLKKLEFLCLRGCDIRQL-PIEVG 615 (1210)
Q Consensus 541 ~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~-~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~ 615 (1210)
++...|..+++|++|++++|.+..+ |..+..+++|++|++++|. +.. +..+..+++|++|++++|.+..+ |..+.
T Consensus 47 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 126 (285)
T 1ozn_A 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh
Confidence 3444455666666666666666654 4556666666666666664 444 34466666666666666666555 33456
Q ss_pred CCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCC
Q 040332 616 ELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC 688 (1210)
Q Consensus 616 ~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 688 (1210)
++++|++|++++| .+..++...++++++|++|++++|.+. +..+..+..+++|+.|++++|.+..
T Consensus 127 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 127 GLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRIS-------SVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-------EECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccc-------ccCHHHhcCccccCEEECCCCcccc
Confidence 6666666666665 555555554566666666666665541 2223345556666666666555543
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=2e-15 Score=166.61 Aligned_cols=184 Identities=23% Similarity=0.357 Sum_probs=158.0
Q ss_pred ccccceeEEEecccccccCC--CcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcc-cccC-CccccCCC
Q 040332 498 SAVKLYTSIVLRDVKTNLLP--ELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVD-LLSL-PSSLVLLS 573 (1210)
Q Consensus 498 ~~~~~~~~l~l~~~~~~~l~--~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~i~~l~ 573 (1210)
.....++++.+.++.+..++ .+..+++|+.|.+..+. ...+....|.++++|++|++++|. +..+ |..+..++
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV---LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc---cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 35678999999999997776 37789999999665443 334556678999999999999997 8887 77899999
Q ss_pred CCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEc
Q 040332 574 NLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNI 650 (1210)
Q Consensus 574 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l 650 (1210)
+|++|++++|.+.. +..+.++++|++|++++|.+..+|.. ++++++|++|++++| .+..+|...+..+++|++|++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEEC
Confidence 99999999999988 56699999999999999999988864 899999999999998 888999877899999999999
Q ss_pred cCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCc
Q 040332 651 GDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRG 692 (1210)
Q Consensus 651 ~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 692 (1210)
++|.+ .+..+..+..+++|+.|++++|.+..++..
T Consensus 185 ~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 185 HQNRV-------AHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp CSSCC-------CEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred CCCcc-------cccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 99987 345577889999999999999998877643
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=8.1e-16 Score=171.89 Aligned_cols=143 Identities=26% Similarity=0.313 Sum_probs=80.6
Q ss_pred cccchhhhcCCcceEEEecCcccccC---CccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCc--c
Q 040332 540 SIANNFFERMIQVRVINLSYVDLLSL---PSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPI--E 613 (1210)
Q Consensus 540 ~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~--~ 613 (1210)
.++..+|.++++|++|++++|.+..+ |..+..+++|++|++++|.+.. +..+..+++|++|++++|.+..+|. .
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 121 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTT
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchh
Confidence 34445555666666666666665543 4455556666666666666555 4456666666666666666655543 4
Q ss_pred cCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCC
Q 040332 614 VGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCL 689 (1210)
Q Consensus 614 i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 689 (1210)
+.++++|++|++++| .+...++..++.+++|++|++++|.+. ....+..+..+++|+.|++++|.+..+
T Consensus 122 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 122 FLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQ------ENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp TTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEG------GGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred hhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccc------cccchhHHhhCcCCCEEECCCCCcCCc
Confidence 556666666666665 444444444456666666666655441 012344555666666666666655443
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=1.3e-15 Score=170.31 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=90.9
Q ss_pred CCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccc--cCCcccc-------CCCCCcEEEecCccCCC--CC
Q 040332 521 ECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLL--SLPSSLV-------LLSNLRTLSLYYCKLLD--IS 589 (1210)
Q Consensus 521 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~-------~l~~L~~L~L~~~~~~~--~~ 589 (1210)
..++|+.|.+..+.. .+|..+... |+.|++++|.+. .+|..+. ++++|++|++++|.+.. |.
T Consensus 41 ~~~~L~~l~l~~n~l----~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE----ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEECTTHHHHCCTT----CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred cCCCceeEeeccccc----ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 445666665554433 455544433 777788888775 3566555 68888888888888875 66
Q ss_pred CC--CCCCCCcEEEeecCCCcccCcccCCC-----CCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCC
Q 040332 590 GI--GDLKKLEFLCLRGCDIRQLPIEVGEL-----ICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 590 ~i--~~L~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
.+ +.+++|++|++++|.+..+|..++.+ ++|++|++++| .+..+++..++++++|++|++++|.+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCc
Confidence 55 78888888888888888777767666 78888888887 66667655568888888888887764
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=3e-14 Score=158.57 Aligned_cols=191 Identities=18% Similarity=0.235 Sum_probs=161.0
Q ss_pred cccceeEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEE
Q 040332 499 AVKLYTSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTL 578 (1210)
Q Consensus 499 ~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 578 (1210)
..+.++++.+.++.+..++.+..+++|+.|.+..+... .++. |..+++|++|++++|.+..+| .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~---~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT---DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC---CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 35678999999999988888889999999966554332 3343 789999999999999999886 68999999999
Q ss_pred EecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccc
Q 040332 579 SLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHW 658 (1210)
Q Consensus 579 ~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~ 658 (1210)
++++|.+...+.+..+++|++|++++|.+..+|. ++.+++|++|++++| .+..++. ++.+++|++|++++|.+..
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~- 187 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD- 187 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccCc-
Confidence 9999999986669999999999999999998886 899999999999998 7888877 6999999999999997731
Q ss_pred cccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEEccc
Q 040332 659 EVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILIGDF 708 (1210)
Q Consensus 659 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~ 708 (1210)
...+..+++|+.|++++|.+..++.-..+.+|+.+.+..+..
T Consensus 188 --------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 188 --------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp --------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred --------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 123889999999999999998887655777888888765554
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=3.6e-14 Score=156.16 Aligned_cols=192 Identities=20% Similarity=0.220 Sum_probs=153.2
Q ss_pred ccceeEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEE
Q 040332 500 VKLYTSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLS 579 (1210)
Q Consensus 500 ~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 579 (1210)
....+.+.+.++.+..+|... .++++.|.+..+. ...++...|..+++|++|++++|.+..+|.. ..+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENL---LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCc---CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 345677888888887777432 2677777555443 3345566788999999999999999988765 7899999999
Q ss_pred ecCccCCC-CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCcc
Q 040332 580 LYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYH 657 (1210)
Q Consensus 580 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~ 657 (1210)
+++|.+.. |..+..+++|++|++++|+++.+|. .+..+++|++|++++| .+..+|.+.+..+++|++|++++|.+.
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~- 161 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT- 161 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCC-
Confidence 99999988 7778999999999999999998874 6899999999999998 788888888889999999999999872
Q ss_pred ccccccccCccccccCCCCCEEEeeccCCCCCCCcc-ccccCceeEEE
Q 040332 658 WEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL-FFEKLERYRIL 704 (1210)
Q Consensus 658 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~ 704 (1210)
......+..+++|+.|++++|.+..+|..+ ...+|+.+.+.
T Consensus 162 ------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 162 ------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred ------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 333455688999999999999999888774 44456665543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=4.4e-14 Score=154.24 Aligned_cols=191 Identities=25% Similarity=0.348 Sum_probs=119.3
Q ss_pred eeEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccc-cCCCCCcEEEec
Q 040332 503 YTSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSL-VLLSNLRTLSLY 581 (1210)
Q Consensus 503 ~~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~l~~L~~L~L~ 581 (1210)
.+.+.+.++.+..+|... .++++.|.+..+. ...++...|.++++|++|++++|.+..+|..+ ..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSC---CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCC---CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 345556655555555321 1455555443332 22344455667777777777777777766543 667777777777
Q ss_pred CccCCC-C-CCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccc
Q 040332 582 YCKLLD-I-SGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHW 658 (1210)
Q Consensus 582 ~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~ 658 (1210)
+|.+.. + ..+.++++|++|++++|.+..+|. .++.+++|++|++++| .+..+|...++.+++|++|++++|.+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l--- 169 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQL--- 169 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC---
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcC---
Confidence 777766 3 345677777777777777776654 3567777777777776 66666666567777777777777655
Q ss_pred cccccccCccccccCCCCCEEEeeccCCCCCCCcc--ccccCceeEEEE
Q 040332 659 EVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL--FFEKLERYRILI 705 (1210)
Q Consensus 659 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~~~~ 705 (1210)
....+..+..+++|+.|++++|.+..++... .+.+|+.+.+..
T Consensus 170 ----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 170 ----KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp ----SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ----cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 2233345666777777777777777666542 345666665543
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=2.2e-15 Score=168.93 Aligned_cols=223 Identities=17% Similarity=0.125 Sum_probs=118.5
Q ss_pred cchhhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCC
Q 040332 542 ANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLK 621 (1210)
Q Consensus 542 ~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 621 (1210)
+...|..+++|++|++++|.+..++. +..+++|++|++++|.+...+ ..++|++|++++|.+..++.. .+++|+
T Consensus 50 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~ 123 (317)
T 3o53_A 50 SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAANNNISRVSCS--RGQGKK 123 (317)
T ss_dssp CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCE
T ss_pred CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEECCCCccCCcCcc--ccCCCC
Confidence 33445566666666666666655443 566666666666666554411 225666666666666555432 245566
Q ss_pred EEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCcccc-ccCCCCCEEEeeccCCCCCCCccccccCce
Q 040332 622 LLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASL-NELKHLTSLQLRIKDINCLPRGLFFEKLER 700 (1210)
Q Consensus 622 ~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l-~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~ 700 (1210)
+|++++| .+..+++..++.+++|++|++++|.+. +..+..+ ..+++|+.|++++|.+..++....+.+|+.
T Consensus 124 ~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~ 195 (317)
T 3o53_A 124 NIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEID-------TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195 (317)
T ss_dssp EEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCC-------EEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCE
T ss_pred EEECCCC-CCCCccchhhhccCCCCEEECCCCCCC-------cccHHHHhhccCcCCEEECCCCcCcccccccccccCCE
Confidence 6666665 455554434455666666666665542 1222223 345666666666666555544433444444
Q ss_pred eEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCccc
Q 040332 701 YRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEA 780 (1210)
Q Consensus 701 l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 780 (1210)
+.+..+.. ..++.. +..+++|+.|+++++ .+..++..+. .+++|+.|++++|+..
T Consensus 196 L~Ls~N~l-------------------~~l~~~-~~~l~~L~~L~L~~N---~l~~l~~~~~--~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 196 LDLSSNKL-------------------AFMGPE-FQSAAGVTWISLRNN---KLVLIEKALR--FSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECCSSCC-------------------CEECGG-GGGGTTCSEEECTTS---CCCEECTTCC--CCTTCCEEECTTCCCB
T ss_pred EECCCCcC-------------------Ccchhh-hcccCcccEEECcCC---cccchhhHhh--cCCCCCEEEccCCCcc
Confidence 43321111 111111 223677888888874 4444444432 3688899999887765
Q ss_pred -ccccCCcccccchhhHHHHhhcccc
Q 040332 781 -HDALNSAESKRQEESTNDMRSNEII 805 (1210)
Q Consensus 781 -~~~~~~~~~~~~L~~L~~~l~~~~~ 805 (1210)
..++..+..++.++.+. +..+..
T Consensus 251 ~~~~~~~~~~~~~L~~l~--l~~~~~ 274 (317)
T 3o53_A 251 CGTLRDFFSKNQRVQTVA--KQTVKK 274 (317)
T ss_dssp HHHHHHHHHTCHHHHHHH--HHHHHH
T ss_pred CcCHHHHHhccccceEEE--CCCchh
Confidence 33333344455566665 444433
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=4.7e-14 Score=154.05 Aligned_cols=180 Identities=23% Similarity=0.357 Sum_probs=153.1
Q ss_pred ccccceeEEEecccccccCC--CcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCc-cccCCCC
Q 040332 498 SAVKLYTSIVLRDVKTNLLP--ELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPS-SLVLLSN 574 (1210)
Q Consensus 498 ~~~~~~~~l~l~~~~~~~l~--~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~ 574 (1210)
.....++++.+.++.+..++ .+..+++|+.|.+..+. ...++...|..+++|++|++++|.+..+|. .+..+++
T Consensus 34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 110 (270)
T 2o6q_A 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK---LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110 (270)
T ss_dssp CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC---CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSS
T ss_pred CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc---cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccC
Confidence 34567899999999998777 47789999999665443 336777888999999999999999998875 4688999
Q ss_pred CcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEcc
Q 040332 575 LRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIG 651 (1210)
Q Consensus 575 L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~ 651 (1210)
|++|++++|.+.. +..|+.+++|++|++++|.+..+|.. ++.+++|++|++++| .+..+++..+.++++|++|+++
T Consensus 111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECC
Confidence 9999999999988 45589999999999999999999875 789999999999998 7888888778999999999999
Q ss_pred CCCCccccccccccCccccccCCCCCEEEeeccCCCC
Q 040332 652 DNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC 688 (1210)
Q Consensus 652 ~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 688 (1210)
+|.+. ...+..+..+++|+.|++++|.+..
T Consensus 190 ~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 190 NNQLK-------RVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SSCCS-------CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcCC-------cCCHHHhccccCCCEEEecCCCeeC
Confidence 99772 3344568889999999999998653
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=5e-14 Score=153.89 Aligned_cols=137 Identities=28% Similarity=0.451 Sum_probs=87.3
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEe
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLD 624 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 624 (1210)
+..+++|+.|+++++.+..++. +..+++|++|++++|.+..++.++++++|++|++++|.+..+|.. ++++++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3456666777777766666553 666677777777777666655666677777777777766666543 46667777777
Q ss_pred cCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCC
Q 040332 625 LRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 625 l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
+++| .+..+++..++.+++|++|++++|.+ .+..+..+..+++|+.|++++|.+..++.
T Consensus 116 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 116 LVEN-QLQSLPDGVFDKLTNLTYLNLAHNQL-------QSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CTTS-CCCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCC-cCCccCHHHhccCCCCCEEECCCCcc-------CccCHHHhccCccCCEEECCCCCcCccCH
Confidence 7766 55666665556667777777776655 22333445666677777777666665543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=2.9e-14 Score=156.90 Aligned_cols=199 Identities=21% Similarity=0.240 Sum_probs=148.4
Q ss_pred CCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccC-CccccCCCCCcEEEecCccCCCCCCCCCCCCCcE
Q 040332 521 ECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEF 599 (1210)
Q Consensus 521 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~ 599 (1210)
++++++.+.+.. .....+|..++ +.+++|++++|.+..+ |..+..+++|++|++++|.+...+..+.+++|++
T Consensus 8 ~l~~l~~l~~~~---~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDK---RNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTT---SCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred ccCCccEEECCC---CCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence 445555553332 22334555443 5788999999998876 5678899999999999999888444488999999
Q ss_pred EEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEE
Q 040332 600 LCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSL 679 (1210)
Q Consensus 600 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L 679 (1210)
|++++|.+..+|..+..+++|++|++++| .+..+|++.++.+++|++|++++|.+. ...+..+..+++|+.|
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK-------TLPPGLLTPTPKLEKL 153 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC-------CCCTTTTTTCTTCCEE
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC-------ccChhhcccccCCCEE
Confidence 99999999999988889999999999998 788888777789999999999988772 3444567788999999
Q ss_pred EeeccCCCCCCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhh
Q 040332 680 QLRIKDINCLPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFAN 759 (1210)
Q Consensus 680 ~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 759 (1210)
++++|.+..+|.... ..+++|+.|+++++ .++.++.
T Consensus 154 ~L~~N~l~~l~~~~~-----------------------------------------~~l~~L~~L~L~~N---~l~~ip~ 189 (290)
T 1p9a_G 154 SLANNNLTELPAGLL-----------------------------------------NGLENLDTLLLQEN---SLYTIPK 189 (290)
T ss_dssp ECTTSCCSCCCTTTT-----------------------------------------TTCTTCCEEECCSS---CCCCCCT
T ss_pred ECCCCcCCccCHHHh-----------------------------------------cCcCCCCEEECCCC---cCCccCh
Confidence 999998887776421 11456677777763 4555555
Q ss_pred hhhhcccccCcEEEeeCCcc
Q 040332 760 ELVKVGSSQLKHLWIEGCHE 779 (1210)
Q Consensus 760 ~l~~~~~~~L~~L~l~~~~~ 779 (1210)
.+.. .++|+.|++++++.
T Consensus 190 ~~~~--~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 190 GFFG--SHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTT--TCCCSEEECCSCCB
T ss_pred hhcc--cccCCeEEeCCCCc
Confidence 4443 57899999998764
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=3e-14 Score=169.17 Aligned_cols=126 Identities=16% Similarity=0.218 Sum_probs=104.3
Q ss_pred cCCcceEEEecCcccccCC-ccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecC
Q 040332 548 RMIQVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLR 626 (1210)
Q Consensus 548 ~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 626 (1210)
.+++|++|++++|.+..+| ..+..+++|++|+|++|.+.....++.+++|++|++++|.+..+|.. ++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 4558999999999999875 68999999999999999998733399999999999999999888753 889999999
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCC
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC 688 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 688 (1210)
+| .+..++. ..+++|++|++++|.+ .+..+..++.+++|+.|++++|.+..
T Consensus 108 ~N-~l~~~~~---~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 108 NN-NISRVSC---SRGQGKKNIYLANNKI-------TMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp SS-CCCCEEE---CCCSSCEEEECCSSCC-------CSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred CC-cCCCCCc---cccCCCCEEECCCCCC-------CCCCchhhcCCCCCCEEECCCCCCCC
Confidence 98 7777775 4578899999998877 34456677888888888888877654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=7.4e-14 Score=152.54 Aligned_cols=176 Identities=20% Similarity=0.321 Sum_probs=141.4
Q ss_pred cccceeEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCcc-ccCCCCCcE
Q 040332 499 AVKLYTSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSS-LVLLSNLRT 577 (1210)
Q Consensus 499 ~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~ 577 (1210)
..+.++.+.+.++.+..++.+..+++|+.|.+..+.... + ..+..+++|++|++++|.+..+|.. +..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~---~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD---I--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC---C--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC---c--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 456688899999888888888888899988666554332 2 2477888999999999998887654 688899999
Q ss_pred EEecCccCCC-C-CCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCC
Q 040332 578 LSLYYCKLLD-I-SGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNS 654 (1210)
Q Consensus 578 L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~ 654 (1210)
|++++|.+.. + ..++.+++|++|++++|.+..+|.. ++++++|++|++++| .+..+++..++.+++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc
Confidence 9999998888 3 3478899999999999988888765 588999999999998 7778887777889999999999887
Q ss_pred CccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 655 FYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 655 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
+ .+..+..+..+++|+.|++++|.+.
T Consensus 193 l-------~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 193 L-------KSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp C-------SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-------CccCHHHHhCCcCCCEEEccCCCcc
Confidence 7 2344556788899999999888655
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=5.2e-14 Score=150.65 Aligned_cols=193 Identities=13% Similarity=0.216 Sum_probs=160.6
Q ss_pred cccceeEEEecccccccCCC--cCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecC-cccccCC-ccccCCCC
Q 040332 499 AVKLYTSIVLRDVKTNLLPE--LVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSY-VDLLSLP-SSLVLLSN 574 (1210)
Q Consensus 499 ~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~i~~l~~ 574 (1210)
....++.+.+.++.+..++. +..+++|+.|.+..+. ....++...|.++++|++|++++ |.+..+| ..+..+++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV--TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS--SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC--CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 55679999999999987774 6789999999655442 13356777789999999999998 9999887 56889999
Q ss_pred CcEEEecCccCCCCCCCCCCCCCc---EEEeecC-CCcccCcc-cCCCCCCC-EEecCCCCCCCccChhhhcCCCcccEE
Q 040332 575 LRTLSLYYCKLLDISGIGDLKKLE---FLCLRGC-DIRQLPIE-VGELICLK-LLDLRDCSKLEVIPPHILSNLSHLEEL 648 (1210)
Q Consensus 575 L~~L~L~~~~~~~~~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~~~~~p~~~l~~L~~L~~L 648 (1210)
|++|++++|.+...+.++.+.+|+ +|++++| .+..+|.. +..+++|+ +|++++| .+..+|...+.. ++|++|
T Consensus 107 L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAV 184 (239)
T ss_dssp CCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEE
T ss_pred CCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEE
Confidence 999999999999844488888888 9999999 99999864 89999999 9999998 788999886555 899999
Q ss_pred EccCCC-CccccccccccCccccccC-CCCCEEEeeccCCCCCCCccccccCceeEE
Q 040332 649 NIGDNS-FYHWEVEVDGVKNASLNEL-KHLTSLQLRIKDINCLPRGLFFEKLERYRI 703 (1210)
Q Consensus 649 ~l~~n~-~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~ 703 (1210)
++++|. + ....+..+..+ ++|+.|++++|.+..+|.. .+.+|+.|.+
T Consensus 185 ~L~~n~~l-------~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 185 YLNKNKYL-------TVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp ECTTCTTC-------CEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred EcCCCCCc-------ccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 999995 5 23445678888 9999999999999988876 6777777654
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=8e-14 Score=152.95 Aligned_cols=183 Identities=22% Similarity=0.348 Sum_probs=105.0
Q ss_pred cchhhhcCCcceEEEecCcccccCCc-cccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCCC
Q 040332 542 ANNFFERMIQVRVINLSYVDLLSLPS-SLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGEL 617 (1210)
Q Consensus 542 ~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l 617 (1210)
+...|.++++|++|++++|.+..++. .+..+++|++|++++|.+.. +..+.++++|++|++++|.+..++. .++++
T Consensus 44 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 123 (276)
T 2z62_A 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (276)
T ss_dssp CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccC
Confidence 33345666666666666666665543 46666666666666666665 3456666666666666666665544 46666
Q ss_pred CCCCEEecCCCCCCCc--cChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCC----EEEeeccCCCCCCC
Q 040332 618 ICLKLLDLRDCSKLEV--IPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLT----SLQLRIKDINCLPR 691 (1210)
Q Consensus 618 ~~L~~L~l~~~~~~~~--~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~----~L~l~~~~~~~~~~ 691 (1210)
++|++|++++| .+.. +|.. ++++++|++|++++|.+. +..+..+..+.+|+ .|++++|.+..++.
T Consensus 124 ~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 124 KTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ-------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp TTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCC-------EECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred CCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCC-------cCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 66666666666 4444 3443 466666666666666552 22223344444444 56666666554443
Q ss_pred ccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcE
Q 040332 692 GLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKH 771 (1210)
Q Consensus 692 ~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~ 771 (1210)
... ...+|+.|+++++ .++.++.... ..+++|++
T Consensus 195 ~~~------------------------------------------~~~~L~~L~L~~n---~l~~~~~~~~-~~l~~L~~ 228 (276)
T 2z62_A 195 GAF------------------------------------------KEIRLKELALDTN---QLKSVPDGIF-DRLTSLQK 228 (276)
T ss_dssp TSS------------------------------------------CSCCEEEEECCSS---CCSCCCTTTT-TTCCSCCE
T ss_pred ccc------------------------------------------CCCcccEEECCCC---ceeecCHhHh-cccccccE
Confidence 210 0125666777764 3444443322 23688888
Q ss_pred EEeeCCcc
Q 040332 772 LWIEGCHE 779 (1210)
Q Consensus 772 L~l~~~~~ 779 (1210)
|++++++.
T Consensus 229 L~l~~N~~ 236 (276)
T 2z62_A 229 IWLHTNPW 236 (276)
T ss_dssp EECCSSCB
T ss_pred EEccCCcc
Confidence 88888764
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=9.5e-14 Score=154.50 Aligned_cols=171 Identities=21% Similarity=0.264 Sum_probs=88.5
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEec
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDL 625 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 625 (1210)
+..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.+..+++|++|++++|.+..+|. +..+++|++|++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYL 136 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEEC
Confidence 3445555555555555555544 55555555555555555544445555555555555555555443 555555555555
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEE
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILI 705 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~ 705 (1210)
++| .+..++. ++.+++|++|++++|.+. ..+ .+..+++|+.|++++|.+..++.
T Consensus 137 ~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~--------~~~-~l~~l~~L~~L~l~~n~l~~~~~-------------- 190 (308)
T 1h6u_A 137 DLN-QITNISP--LAGLTNLQYLSIGNAQVS--------DLT-PLANLSKLTTLKADDNKISDISP-------------- 190 (308)
T ss_dssp CSS-CCCCCGG--GGGCTTCCEEECCSSCCC--------CCG-GGTTCTTCCEEECCSSCCCCCGG--------------
T ss_pred CCC-ccCcCcc--ccCCCCccEEEccCCcCC--------CCh-hhcCCCCCCEEECCCCccCcChh--------------
Confidence 554 4444443 355555555555555431 011 14455555555555554443322
Q ss_pred cccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcc
Q 040332 706 GDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHE 779 (1210)
Q Consensus 706 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 779 (1210)
...+++|+.|+++++ .+..+.. + ..+++|+.|++++|..
T Consensus 191 -----------------------------l~~l~~L~~L~L~~N---~l~~~~~-l--~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 191 -----------------------------LASLPNLIEVHLKNN---QISDVSP-L--ANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -----------------------------GGGCTTCCEEECTTS---CCCBCGG-G--TTCTTCCEEEEEEEEE
T ss_pred -----------------------------hcCCCCCCEEEccCC---ccCcccc-c--cCCCCCCEEEccCCee
Confidence 122567777777775 3333332 2 2467888888887653
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=1.5e-13 Score=148.08 Aligned_cols=175 Identities=21% Similarity=0.352 Sum_probs=136.4
Q ss_pred eeEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCc-cccCCCCCcEEEec
Q 040332 503 YTSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPS-SLVLLSNLRTLSLY 581 (1210)
Q Consensus 503 ~~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~ 581 (1210)
.+++.+.++.+..+|.... ++++.|.+..+.. ..++...|.++++|++|++++|.+..++. .+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL---ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEccCCCc---CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567777777777774322 5677775544432 34555668889999999999999887654 47889999999999
Q ss_pred CccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccc
Q 040332 582 YCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHW 658 (1210)
Q Consensus 582 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~ 658 (1210)
+|.+.. +..|..+++|++|++++|.+..+|.. +..+++|++|++++| .+..+|+..++.+++|++|++++|.+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l--- 167 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQL--- 167 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC---
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcC---
Confidence 999888 44578999999999999999988775 588999999999998 78888887678899999999998877
Q ss_pred cccccccCccccccCCCCCEEEeeccCCCCC
Q 040332 659 EVEVDGVKNASLNELKHLTSLQLRIKDINCL 689 (1210)
Q Consensus 659 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 689 (1210)
.+..+..+..+++|+.|++++|.+...
T Consensus 168 ----~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 ----QSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ----SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ----CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 234455788889999999998887654
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=9.5e-15 Score=173.48 Aligned_cols=197 Identities=20% Similarity=0.155 Sum_probs=86.8
Q ss_pred hhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEe
Q 040332 545 FFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLD 624 (1210)
Q Consensus 545 ~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 624 (1210)
.|..+++|++|+|++|.+...++ +..+++|++|+|++|.+...+ ..++|++|++++|.+..+|.. .+++|++|+
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~ 126 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAANNNISRVSCS--RGQGKKNIY 126 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSSCCCCEEEC--CCSSCEEEE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcCCcCCCCCcc--ccCCCCEEE
Confidence 34444444444444444443332 444444444444444444311 114444444444444444321 234444444
Q ss_pred cCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccc-cCCCCCEEEeeccCCCCCCCccccccCceeEE
Q 040332 625 LRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLN-ELKHLTSLQLRIKDINCLPRGLFFEKLERYRI 703 (1210)
Q Consensus 625 l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~ 703 (1210)
+++| .+..+++..++++++|++|++++|.+ .+..+..+. .+++|+.|++++|.+..++....+.+|+.|.+
T Consensus 127 L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-------~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 127 LANN-KITMLRDLDEGCRSRVQYLDLKLNEI-------DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp CCSS-CCCSGGGBCGGGGSSEEEEECTTSCC-------CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred CCCC-CCCCCCchhhcCCCCCCEEECCCCCC-------CCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEEC
Confidence 4444 33333332234444444444444443 112222332 34444444444444443333222333333222
Q ss_pred EEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCccc
Q 040332 704 LIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEA 780 (1210)
Q Consensus 704 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 780 (1210)
..+. ...+++. +..+++|+.|+++++ .+..++..+. .+++|+.|++++|+..
T Consensus 199 s~N~-------------------l~~~~~~-~~~l~~L~~L~Ls~N---~l~~lp~~l~--~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 199 SSNK-------------------LAFMGPE-FQSAAGVTWISLRNN---KLVLIEKALR--FSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CSSC-------------------CCEECGG-GGGGTTCSEEECTTS---CCCEECTTCC--CCTTCCEEECTTCCBC
T ss_pred CCCC-------------------CCCCCHh-HcCCCCccEEEecCC---cCcccchhhc--cCCCCCEEEcCCCCCc
Confidence 1111 1111111 123567778888774 4444444332 3678888888887654
No 87
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=4.4e-14 Score=157.85 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=64.2
Q ss_pred hcCCcceEEEecCcccccCCccccCC-----CCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcc---cCccc--
Q 040332 547 ERMIQVRVINLSYVDLLSLPSSLVLL-----SNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQ---LPIEV-- 614 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~~lp~~i~~l-----~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~---lp~~i-- 614 (1210)
..+++|++|++++|.+..+|..++.+ ++|++|++++|.+.. +..|+++++|++|++++|.+.. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 44555555555555555445444444 455555555555544 2345555555555555554332 23333
Q ss_pred CCCCCCCEEecCCCCCCC---ccChhhhcCCCcccEEEccCCCCccccccccccC-ccccccCCCCCEEEeeccCCCCCC
Q 040332 615 GELICLKLLDLRDCSKLE---VIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVK-NASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 615 ~~l~~L~~L~l~~~~~~~---~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~-~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
+++++|++|++++| .+. .++...+.++++|++|++++|.+. +.. ...+..+++|+.|++++|.+..+|
T Consensus 198 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 198 LKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLR-------DAAGAPSCDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp TSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCC-------SSCCCSCCCCCTTCCEEECTTSCCSSCC
T ss_pred ccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCC-------cccchhhhhhcCCCCEEECCCCccChhh
Confidence 45555555555555 333 222233344455555555555441 111 123333455555555555555444
Q ss_pred C
Q 040332 691 R 691 (1210)
Q Consensus 691 ~ 691 (1210)
.
T Consensus 270 ~ 270 (312)
T 1wwl_A 270 K 270 (312)
T ss_dssp S
T ss_pred h
Confidence 3
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=1.5e-13 Score=156.21 Aligned_cols=239 Identities=18% Similarity=0.171 Sum_probs=145.3
Q ss_pred eEEEecCcccccCCccccCCCCCcEEEecCccCCC-CC-CCCCCCCCcEEEeecCCCc-ccCc-ccCCCCCCCEEecCCC
Q 040332 553 RVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-IS-GIGDLKKLEFLCLRGCDIR-QLPI-EVGELICLKLLDLRDC 628 (1210)
Q Consensus 553 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~-~i~~L~~L~~L~l~~~~l~-~lp~-~i~~l~~L~~L~l~~~ 628 (1210)
++++.+++.++++|..+ ..++++|+|++|+++. |+ .|.++++|++|+|++|.+. .+|. .+.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777888888888766 3577888888877777 43 4777777777777777764 3543 4567777665444443
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeec-cCCCCCCCccccccCceeEEEEcc
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRI-KDINCLPRGLFFEKLERYRILIGD 707 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~-~~~~~~~~~~~~~~L~~l~~~~~~ 707 (1210)
+.+..++++.++.+++|++|++++|.+. ......+....++..|++.. +.+..++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~-------~~~~~~~~~~~~l~~l~l~~~~~i~~l~~---------------- 146 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIK-------HLPDVHKIHSLQKVLLDIQDNINIHTIER---------------- 146 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCS-------SCCCCTTCCBSSCEEEEEESCTTCCEECT----------------
T ss_pred CcccccCchhhhhccccccccccccccc-------cCCchhhcccchhhhhhhccccccccccc----------------
Confidence 3667776666677777777777766542 11122222333333444432 12221111
Q ss_pred cccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCcccccccCCc
Q 040332 708 FWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHDALNSA 787 (1210)
Q Consensus 708 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 787 (1210)
.........++.|+++++.. ..++.
T Consensus 147 ----------------------------------------------------~~f~~~~~~l~~L~L~~N~i-~~i~~-- 171 (350)
T 4ay9_X 147 ----------------------------------------------------NSFVGLSFESVILWLNKNGI-QEIHN-- 171 (350)
T ss_dssp ----------------------------------------------------TSSTTSBSSCEEEECCSSCC-CEECT--
T ss_pred ----------------------------------------------------cchhhcchhhhhhccccccc-cCCCh--
Confidence 11111124567777777532 22211
Q ss_pred ccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEeccccccceecccc
Q 040332 788 ESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGCPVLEEIIVVDD 867 (1210)
Q Consensus 788 ~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 867 (1210)
......+|++|.+.++..++.++. ..++.+++|+.|+++++. ++.++.
T Consensus 172 ---------------------------~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~-l~~lp~--- 219 (350)
T 4ay9_X 172 ---------------------------SAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IHSLPS--- 219 (350)
T ss_dssp ---------------------------TSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC-CCCCCS---
T ss_pred ---------------------------hhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC-cCccCh---
Confidence 111235677888887777777765 335778888888888875 766632
Q ss_pred ccccccccccccccceeecccCcccccccCCCcccccCCCcceeeeec
Q 040332 868 QEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRISR 915 (1210)
Q Consensus 868 ~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~~ 915 (1210)
..|.+|+.|.+.++.+++.+|.- ..+++|+.+++.+
T Consensus 220 --------~~~~~L~~L~~l~~~~l~~lP~l----~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 --------YGLENLKKLRARSTYNLKKLPTL----EKLVALMEASLTY 255 (350)
T ss_dssp --------SSCTTCCEEECTTCTTCCCCCCT----TTCCSCCEEECSC
T ss_pred --------hhhccchHhhhccCCCcCcCCCc----hhCcChhhCcCCC
Confidence 34778888888888888888753 3588888888754
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=7.5e-14 Score=153.18 Aligned_cols=196 Identities=20% Similarity=0.214 Sum_probs=157.9
Q ss_pred ccccceeEEEecccccccCC--CcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCC-ccccCCCC
Q 040332 498 SAVKLYTSIVLRDVKTNLLP--ELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLP-SSLVLLSN 574 (1210)
Q Consensus 498 ~~~~~~~~l~l~~~~~~~l~--~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~ 574 (1210)
.....++++.+.++.+..++ .+.++++|+.|.+..+. ...++...|.++++|++|++++|.+..++ ..+..+++
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc---CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 34567999999999987766 57789999999665543 33566677899999999999999999775 67999999
Q ss_pred CcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcc--cCcccCCCCCCCEEecCCCCCCCccChhhhcCCCccc----
Q 040332 575 LRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQ--LPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLE---- 646 (1210)
Q Consensus 575 L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~---- 646 (1210)
|++|++++|.+.. +..++++++|++|++++|.+.. +|..++++++|++|++++| .+..++...+..+.+|+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccce
Confidence 9999999999988 3469999999999999999986 6889999999999999999 78888766566666666
Q ss_pred EEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCcc--ccccCceeEEEE
Q 040332 647 ELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL--FFEKLERYRILI 705 (1210)
Q Consensus 647 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~~~~ 705 (1210)
+|++++|.+. ..+.......+|+.|++++|.+..++... .+.+|+.+.+..
T Consensus 181 ~L~ls~n~l~--------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 181 SLDLSLNPMN--------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EEECCSSCCC--------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred eeecCCCccc--------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 8999998873 22223333448999999999999888763 466777766543
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=6.3e-14 Score=149.99 Aligned_cols=115 Identities=21% Similarity=0.321 Sum_probs=59.8
Q ss_pred cccchhhhcCCcceEEEecCcc-cccCCc-cccCCCCCcEEEecC-ccCCC--CCCCCCCCCCcEEEeecCCCcccCccc
Q 040332 540 SIANNFFERMIQVRVINLSYVD-LLSLPS-SLVLLSNLRTLSLYY-CKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIEV 614 (1210)
Q Consensus 540 ~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~i~~l~~L~~L~L~~-~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i 614 (1210)
.++...|.++++|++|++++|. +..+|. .+..+++|++|++++ |.+.. +..|.++++|++|++++|.+..+|. +
T Consensus 45 ~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~ 123 (239)
T 2xwt_C 45 TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-L 123 (239)
T ss_dssp EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-C
T ss_pred EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-c
Confidence 3344445555555555555554 554443 455555555555555 45544 2335555555555555555555554 5
Q ss_pred CCCCCCC---EEecCCCCCCCccChhhhcCCCccc-EEEccCCCC
Q 040332 615 GELICLK---LLDLRDCSKLEVIPPHILSNLSHLE-ELNIGDNSF 655 (1210)
Q Consensus 615 ~~l~~L~---~L~l~~~~~~~~~p~~~l~~L~~L~-~L~l~~n~~ 655 (1210)
+.+++|+ +|++++|..+..+|...++.+++|+ +|++++|.+
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 5555555 5555555445555554445555555 555555544
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=1.4e-13 Score=151.61 Aligned_cols=173 Identities=24% Similarity=0.319 Sum_probs=131.3
Q ss_pred cccceeEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEE
Q 040332 499 AVKLYTSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTL 578 (1210)
Q Consensus 499 ~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 578 (1210)
....++.+.+.++.+..++.+..+++|+.|.+..+... .++. +..+++|++|++++|.+..+|. +..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~---~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC---CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 35568889998888888877777888888865544332 2333 6778888888888888887665 7888888888
Q ss_pred EecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccc
Q 040332 579 SLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHW 658 (1210)
Q Consensus 579 ~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~ 658 (1210)
++++|.+...+.+..+++|++|++++|.+..+ ..++++++|++|++++| .+..+++ ++.+++|++|++++|.+..
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCC-
Confidence 88888888777788888888888888888877 46788888888888887 6777766 5888888888888887621
Q ss_pred cccccccCccccccCCCCCEEEeeccCCCCCC
Q 040332 659 EVEVDGVKNASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 659 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
...+..+++|+.|++++|.+...|
T Consensus 193 --------l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 --------LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp --------CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred --------ChhhccCCCCCEEECcCCcccCCc
Confidence 134777888888888887766544
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=1.2e-12 Score=141.16 Aligned_cols=129 Identities=22% Similarity=0.367 Sum_probs=61.1
Q ss_pred ceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecCCC
Q 040332 552 VRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLRDC 628 (1210)
Q Consensus 552 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 628 (1210)
.+.++++++.+..+|..+. .+|++|++++|.+.. +..|+++++|++|++++|.+..++. .+.++++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3444555555555554443 345555555555444 2334555555555555555544433 2445555555555554
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCC
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
.+..+|...++.+++|++|++++|.+. +..+..+..+++|+.|++++|.+..++
T Consensus 94 -~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 94 -QLASLPLGVFDHLTQLDKLYLGGNQLK-------SLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -cccccChhHhcccCCCCEEEcCCCcCC-------CcChhHhccCCcccEEECcCCcCCccC
Confidence 444444444445555555555554441 122223444555555555555444443
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=8.4e-13 Score=136.27 Aligned_cols=148 Identities=19% Similarity=0.251 Sum_probs=114.3
Q ss_pred hcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcc-cCcccCCCCCCCEEec
Q 040332 547 ERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQ-LPIEVGELICLKLLDL 625 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 625 (1210)
..+++|+.|++++|.+..+| .+..+++|++|++++|.+..++.+..+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 56778888888888888888 688888888888888877777788888888888888888875 6777888888888888
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEE
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRIL 704 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~ 704 (1210)
++| .+.......++++++|++|++++|... +.. ..+..+++|+.|++++|.+..++.-..+.+|+.+.+.
T Consensus 120 s~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i-------~~~-~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 120 SHS-AHDDSILTKINTLPKVNSIDLSYNGAI-------TDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189 (197)
T ss_dssp CSS-BCBGGGHHHHTTCSSCCEEECCSCTBC-------CCC-GGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEEC
T ss_pred cCC-ccCcHhHHHHhhCCCCCEEEccCCCCc-------ccc-HhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEee
Confidence 888 555432333688888888888888621 122 3678888888888888888877744566777776664
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=1.2e-13 Score=156.69 Aligned_cols=224 Identities=18% Similarity=0.171 Sum_probs=123.5
Q ss_pred ceEEEecCcccccCCccccCC--CCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcc--cCcccCCCCCCCEEecC
Q 040332 552 VRVINLSYVDLLSLPSSLVLL--SNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQ--LPIEVGELICLKLLDLR 626 (1210)
Q Consensus 552 Lr~L~l~~~~~~~lp~~i~~l--~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~ 626 (1210)
++.++++++.+. |..+..+ .++++|++++|.+.. ++.+..+++|++|++++|.+.. +|..+.++++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 556666665554 3444555 566666666666665 4455566666666666666542 55566666667777776
Q ss_pred CCCCCC-ccChhhhcCCCcccEEEccCCC-CccccccccccCccccccCCCCCEEEeecc-CCCCCCCccccccCceeEE
Q 040332 627 DCSKLE-VIPPHILSNLSHLEELNIGDNS-FYHWEVEVDGVKNASLNELKHLTSLQLRIK-DINCLPRGLFFEKLERYRI 703 (1210)
Q Consensus 627 ~~~~~~-~~p~~~l~~L~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~L~~l~~ 703 (1210)
+| .+. ..+.. ++++++|++|++++|. +. ....+..+..+++|+.|++++| .+...
T Consensus 127 ~~-~l~~~~~~~-l~~~~~L~~L~L~~~~~l~------~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------------- 184 (336)
T 2ast_B 127 GL-RLSDPIVNT-LAKNSNLVRLNLSGCSGFS------EFALQTLLSSCSRLDELNLSWCFDFTEK-------------- 184 (336)
T ss_dssp TC-BCCHHHHHH-HTTCTTCSEEECTTCBSCC------HHHHHHHHHHCTTCCEEECCCCTTCCHH--------------
T ss_pred Cc-ccCHHHHHH-HhcCCCCCEEECCCCCCCC------HHHHHHHHhcCCCCCEEcCCCCCCcChH--------------
Confidence 66 333 23333 4666677777766662 21 0012334556666666666655 33210
Q ss_pred EEcccccccCcCCcceEEecCCcccchHHHHHHHhc-cccEEeeccccc-ccchhhhhhhhhcccccCcEEEeeCCcccc
Q 040332 704 LIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQ-GIEHLGLYGLQE-HDVESFANELVKVGSSQLKHLWIEGCHEAH 781 (1210)
Q Consensus 704 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~-~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 781 (1210)
........++ +|+.|+++++.. .....+...+. .+++|++|++++|..+.
T Consensus 185 --------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 185 --------------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp --------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCC
T ss_pred --------------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--hCCCCCEEeCCCCCcCC
Confidence 0011233455 666777666520 11122222222 36788888888876432
Q ss_pred cccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhcccccEEEEecc
Q 040332 782 DALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQHLQIWGC 856 (1210)
Q Consensus 782 ~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~ 856 (1210)
... ...+..+++|++|++++|..+.... ...++.+++|+.|++++|
T Consensus 237 ~~~----------------------------~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 237 NDC----------------------------FQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGG----------------------------GGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS
T ss_pred HHH----------------------------HHHHhCCCCCCEeeCCCCCCCCHHH-HHHHhcCCCCCEEeccCc
Confidence 110 1122344788888888886443221 123567888888888887
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=5.2e-13 Score=147.08 Aligned_cols=174 Identities=25% Similarity=0.240 Sum_probs=142.0
Q ss_pred CCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCC
Q 040332 516 LPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLK 595 (1210)
Q Consensus 516 l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~ 595 (1210)
......+++|+.|.+..+.. ..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++.++.++
T Consensus 39 ~~~~~~l~~L~~L~l~~~~i---~~~~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~ 112 (291)
T 1h6t_A 39 AVTQNELNSIDQIIANNSDI---KSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLK 112 (291)
T ss_dssp EECHHHHHTCCEEECTTSCC---CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCT
T ss_pred ccchhhcCcccEEEccCCCc---ccCh--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCC
Confidence 33345566777775544332 2333 27889999999999999999887 999999999999999999977799999
Q ss_pred CCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCC
Q 040332 596 KLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKH 675 (1210)
Q Consensus 596 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 675 (1210)
+|++|++++|.+..++ .+..+++|++|++++| .+..++. ++.+++|++|++++|.+. +. + .+..+++
T Consensus 113 ~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~-------~~-~-~l~~l~~ 179 (291)
T 1h6t_A 113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS-------DI-V-PLAGLTK 179 (291)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCC-------CC-G-GGTTCTT
T ss_pred CCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccc-------cc-h-hhcCCCc
Confidence 9999999999999885 6889999999999998 7777743 699999999999999872 22 2 2889999
Q ss_pred CCEEEeeccCCCCCCCccccccCceeEEEEccc
Q 040332 676 LTSLQLRIKDINCLPRGLFFEKLERYRILIGDF 708 (1210)
Q Consensus 676 L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~ 708 (1210)
|+.|++++|.+..++.-..+.+|+.+.+..+..
T Consensus 180 L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 180 LQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred cCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 999999999999887656778888888875554
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.41 E-value=1.2e-11 Score=141.04 Aligned_cols=284 Identities=14% Similarity=0.088 Sum_probs=169.3
Q ss_pred ccCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc------CHHHHH
Q 040332 150 SKDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ------DIRKIQ 223 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~ 223 (1210)
......|+||+.+++++.+++..+ +++.|+|++|+|||||+++++++. + .+|+++.... +...+.
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 335567999999999999988653 799999999999999999999774 1 6777765432 566667
Q ss_pred HHHHHHhCCC---------------cccC---Ccccc----------cCccEEEEEeCCCCccc---------hhhhccc
Q 040332 224 GEIADKLGLK---------------FHEE---SEPGR----------EEKKILVILDNIWENLD---------LRVVGIP 266 (1210)
Q Consensus 224 ~~i~~~l~~~---------------~~~~---~~~~~----------~~kr~LlvlDdv~~~~~---------~~~~~~~ 266 (1210)
..+.+.+... .... ..... ..++++||+||++.... +..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 7776655420 0000 00000 12489999999987543 2222211
Q ss_pred CCCCCCCeEEEEeeCchhhhhh----------cCCC-cceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhC
Q 040332 267 HGDDHRGCKILLTARSLDVLSR----------KMDS-QQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECA 335 (1210)
Q Consensus 267 ~~~~~~gs~iivTtR~~~v~~~----------~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~ 335 (1210)
. ....+.++|+|++...+... ..+. ...+.+.+|+.+|+.+++.+.+...... --.+.+..|++.++
T Consensus 159 ~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tg 236 (350)
T 2qen_A 159 Y-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLD 236 (350)
T ss_dssp H-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHT
T ss_pred H-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhC
Confidence 1 11247889999887543111 0111 2478999999999999998765321111 11346789999999
Q ss_pred CcchHHHHHHHHHHcCCChHHHH-HHHHHhcCCCCCCccccchhHHHHH-HhhhcCCCccchhhhHhhhccCccccHHHH
Q 040332 336 GLPVSIVTVARALRNNKSLFDWK-DALEQLRRPPLKNFMNIQPNAHKAI-KLSYDNLGGEELKNVFLLIGYTVIESIDDL 413 (1210)
Q Consensus 336 glPlai~~~~~~l~~~~~~~~w~-~~~~~l~~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~lk~cfl~~s~fp~~~~~~L 413 (1210)
|.|+++..++..+....+...+. .+.+.. ...+...+ .+.+ + ++ ..+..+..+|.=+ .....+
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~~-~-~~-~~~~~l~~la~g~-~~~~~l 301 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRAMKRTLEVA-----------KGLIMGELEELRR-R-SP-RYVDILRAIALGY-NRWSLI 301 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHH-H-CH-HHHHHHHHHHTTC-CSHHHH
T ss_pred CCHHHHHHHHHHHhccccHhHHHHHHHHHH-----------HHHHHHHHHHHHh-C-Ch-hHHHHHHHHHhCC-CCHHHH
Confidence 99999999987654222222221 111110 00011111 1112 2 44 4677777777622 344444
Q ss_pred HHHHhh-cCcCCCCCcHHHHHHHHHHHHHHHHhhcceeecccCCCCeEEh-hHHHHHHHH
Q 040332 414 LMYGMG-LGLFQGVSKMEEARARVHTLVHKLKASCMLLDHLSKNEEFFSM-HDVVRDVAI 471 (1210)
Q Consensus 414 i~~w~a-~g~~~~~~~~e~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~m-Hdlv~~~~~ 471 (1210)
.....+ .| + .+.. .+.++++.|.+.+++.... +.|++ |++++++.+
T Consensus 302 ~~~~~~~~~---~-~~~~----~~~~~l~~L~~~gli~~~~----~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVKGT---K-IPEP----RLYALLENLKKMNWIVEED----NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTTC---C-CCHH----HHHHHHHHHHHTTSEEEET----TEEEESSHHHHHHHT
T ss_pred HHHHHHHhC---C-CCHH----HHHHHHHHHHhCCCEEecC----CEEEEecHHHHHHHc
Confidence 443322 11 1 1122 2345788999999997642 45665 888888754
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=5.5e-13 Score=161.17 Aligned_cols=174 Identities=24% Similarity=0.314 Sum_probs=141.8
Q ss_pred cccceeEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEE
Q 040332 499 AVKLYTSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTL 578 (1210)
Q Consensus 499 ~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 578 (1210)
....++.+.+.++.+..++.+..+++|+.|.+..+... .++. |..++.|+.|+|++|.+..+| .+..+++|++|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC---CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC---CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 34567888888888888888888899998866655433 2333 788999999999999998877 68899999999
Q ss_pred EecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccc
Q 040332 579 SLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHW 658 (1210)
Q Consensus 579 ~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~ 658 (1210)
+|++|.+..++.+..+++|+.|+|++|.+..+ ..++.+++|++|++++| .+..+++ +..+++|++|++++|.+..
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCC-
Confidence 99999988877889999999999999998888 57889999999999998 6777766 6899999999999887721
Q ss_pred cccccccCccccccCCCCCEEEeeccCCCCCCC
Q 040332 659 EVEVDGVKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 659 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
...+..+++|+.|++++|.+...|.
T Consensus 190 --------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 190 --------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp --------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred --------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 2468888999999999888766554
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=1.1e-12 Score=149.18 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=110.8
Q ss_pred CcccccchhhhcCCcceEEEecCcccccCCc-cccCCCCCcEEEecCccCCC---CCCCCCCCCCcE-EEeecCCCcccC
Q 040332 537 PSLSIANNFFERMIQVRVINLSYVDLLSLPS-SLVLLSNLRTLSLYYCKLLD---ISGIGDLKKLEF-LCLRGCDIRQLP 611 (1210)
Q Consensus 537 ~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~-L~l~~~~l~~lp 611 (1210)
....+|.++ .+.++.|+|++|.++.+|. +|.++++|++|+|++|.+.. +..|.++.+|+. +.+.+|++..+|
T Consensus 20 ~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 20 KVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 344566655 3578999999999999986 58999999999999999866 345889999876 566678999985
Q ss_pred -cccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCC-CCCEEEeeccCCCCC
Q 040332 612 -IEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELK-HLTSLQLRIKDINCL 689 (1210)
Q Consensus 612 -~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~~~ 689 (1210)
..+..+++|++|++++| .+..+|+..+....++..|++.++... .......+..+. .++.|++++|.+..+
T Consensus 97 ~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i------~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINI------HTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTC------CEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred chhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccc------ccccccchhhcchhhhhhccccccccCC
Confidence 56799999999999998 788888765566777888888654321 122233455553 577899998888766
Q ss_pred CCc
Q 040332 690 PRG 692 (1210)
Q Consensus 690 ~~~ 692 (1210)
+..
T Consensus 170 ~~~ 172 (350)
T 4ay9_X 170 HNS 172 (350)
T ss_dssp CTT
T ss_pred Chh
Confidence 654
No 99
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.40 E-value=4.8e-12 Score=147.92 Aligned_cols=279 Identities=14% Similarity=0.091 Sum_probs=167.7
Q ss_pred ccccccHHHHHHHHHHh-C----C--CCceEEEE--EcCCCCcHHHHHHHHHHHhhcc---CCCC-eEEEEEecCCcCHH
Q 040332 154 EAFESRMPTLRSILSAL-E----D--PDVNMLGI--YGMGGIGKTMLAEEVARKIKSD---KIFD-QVVFAEVSQSQDIR 220 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~i--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 220 (1210)
..|+||+.+++++..++ . . ...+.+.| +|++|+||||||+.+++..... ..|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67899999999999888 3 2 34566777 9999999999999999876532 1233 36788877777889
Q ss_pred HHHHHHHHHhCCCcccCCc--cc--c--------cCccEEEEEeCCCCcc--------chhhhcccC---CCCC--CCeE
Q 040332 221 KIQGEIADKLGLKFHEESE--PG--R--------EEKKILVILDNIWENL--------DLRVVGIPH---GDDH--RGCK 275 (1210)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~--~~--~--------~~kr~LlvlDdv~~~~--------~~~~~~~~~---~~~~--~gs~ 275 (1210)
.++..++.+++........ .. . .+++++||+||++... .+..+...+ +..+ ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999998765332111 00 0 3679999999998642 222222222 1112 4556
Q ss_pred EEEeeCchhhhhh--------cCCCcceeeecCCCHHHHHHHHHHHhCCC-CCCchHHHHHHHHHHHhC------CcchH
Q 040332 276 ILLTARSLDVLSR--------KMDSQQNFAVGILKEVEAWSLFKKMAGDY-IEGSEFQLVAREVEKECA------GLPVS 340 (1210)
Q Consensus 276 iivTtR~~~v~~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~c~------glPla 340 (1210)
||+||+...+... .......+.+++++.++++++|..++... ....--.+....|++.++ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 8888876543210 01112239999999999999997664210 011112456788999999 99976
Q ss_pred HHHHHHHH---H--cC---CChHHHHHHHHHhcCCCCCCccccchhHHHHHHhhhcCCCccchhhhHhhhccCc-----c
Q 040332 341 IVTVARAL---R--NN---KSLFDWKDALEQLRRPPLKNFMNIQPNAHKAIKLSYDNLGGEELKNVFLLIGYTV-----I 407 (1210)
Q Consensus 341 i~~~~~~l---~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp-----~ 407 (1210)
+..+.... + .. -+...+..++..... ...+.-++..||++ .+.++..++.+. .
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCC
Confidence 55554322 1 11 123334433332210 12344467788874 578877777542 3
Q ss_pred ccHHHHHHHHh--h---cCcCCCCCcHHHHHHHHHHHHHHHHhhcceeec
Q 040332 408 ESIDDLLMYGM--G---LGLFQGVSKMEEARARVHTLVHKLKASCMLLDH 452 (1210)
Q Consensus 408 ~~~~~Li~~w~--a---~g~~~~~~~~e~~~~~~~~~~~~L~~~~ll~~~ 452 (1210)
+...++...+. + .|. . .-+. ..+.+++++|...+++...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~-~-~~~~----~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNV-K-PRGY----TQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCC-C-CCCH----HHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhhcCC-C-CCCH----HHHHHHHHHHHhCCCEEee
Confidence 55555544332 1 121 0 0111 2244578999999999764
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=9.1e-14 Score=155.20 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=36.1
Q ss_pred cceEEEecCcccc-cCCccc--cCCCCCcEEEecCccCCC--C----CCCCCCCCCcEEEeecCCCcccC-cccCCCCCC
Q 040332 551 QVRVINLSYVDLL-SLPSSL--VLLSNLRTLSLYYCKLLD--I----SGIGDLKKLEFLCLRGCDIRQLP-IEVGELICL 620 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~-~lp~~i--~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L 620 (1210)
.|++|++++|.+. ..|..+ ..+++|++|++++|.+.. + ..+..+++|++|++++|.+..+| ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 3555555555444 233333 445555555555554443 1 11234445555555555544443 244455555
Q ss_pred CEEecCCC
Q 040332 621 KLLDLRDC 628 (1210)
Q Consensus 621 ~~L~l~~~ 628 (1210)
++|++++|
T Consensus 172 ~~L~Ls~N 179 (310)
T 4glp_A 172 TSLDLSDN 179 (310)
T ss_dssp CEEECCSC
T ss_pred CEEECCCC
Confidence 55555554
No 101
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.39 E-value=7e-12 Score=143.43 Aligned_cols=282 Identities=11% Similarity=0.117 Sum_probs=166.2
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-----cCHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-----QDIRKIQGE 225 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~ 225 (1210)
.....|+||+.+++.+.+ +.. +++.|+|++|+|||||++++++.... ..+|+.+... .+.......
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHH
Confidence 345678999999999999 755 69999999999999999999988642 2578887643 344555555
Q ss_pred HHHHhCC------------------Cccc-----------CCcccc-------cC-ccEEEEEeCCCCcc-----chhhh
Q 040332 226 IADKLGL------------------KFHE-----------ESEPGR-------EE-KKILVILDNIWENL-----DLRVV 263 (1210)
Q Consensus 226 i~~~l~~------------------~~~~-----------~~~~~~-------~~-kr~LlvlDdv~~~~-----~~~~~ 263 (1210)
+.+.+.. .... ...... .. ++++||+||++... +|..+
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 4443310 0000 000000 11 49999999997632 22222
Q ss_pred cccCCCCCCCeEEEEeeCchhhhhh----------cCCC-cceeeecCCCHHHHHHHHHHHhCC-CCCCchHHHHHHHHH
Q 040332 264 GIPHGDDHRGCKILLTARSLDVLSR----------KMDS-QQNFAVGILKEVEAWSLFKKMAGD-YIEGSEFQLVAREVE 331 (1210)
Q Consensus 264 ~~~~~~~~~gs~iivTtR~~~v~~~----------~~~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~ 331 (1210)
...+.....+.++|+|+|....... ..+. ...+.+.+|+.+|+.+++...+.. ....... ..|+
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~ 236 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVY 236 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHH
Confidence 2222122246789999997653211 0112 257899999999999999876531 1111111 7899
Q ss_pred HHhCCcchHHHHHHHHHHcCCChHHHHH-HHHHhcCCCCCCccccchhHHHHHH-hhhc--CCCccchhhhHhhhccCcc
Q 040332 332 KECAGLPVSIVTVARALRNNKSLFDWKD-ALEQLRRPPLKNFMNIQPNAHKAIK-LSYD--NLGGEELKNVFLLIGYTVI 407 (1210)
Q Consensus 332 ~~c~glPlai~~~~~~l~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~lk~cfl~~s~fp~ 407 (1210)
+.++|.|+++..++..+....+...|.. +.+.. ...+...+. +.++ .+++ ..+..+..+|.-+
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~g~- 303 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARK-RYLNIMRTLSKCG- 303 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTTCB-
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccH-HHHHHHHHHHcCC-
Confidence 9999999999999987754333333321 11110 011111111 2221 5665 4677777777733
Q ss_pred ccHHHHHHHHh-hcCcCCCCCcHHHHHHHHHHHHHHHHhhcceeecccCCCCeEE-hhHHHHHHH
Q 040332 408 ESIDDLLMYGM-GLGLFQGVSKMEEARARVHTLVHKLKASCMLLDHLSKNEEFFS-MHDVVRDVA 470 (1210)
Q Consensus 408 ~~~~~Li~~w~-a~g~~~~~~~~e~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~-mHdlv~~~~ 470 (1210)
....+..... ..|. ..+. ..+.++++.|.+.+++.... +.|+ -|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~---~~~~----~~~~~~L~~L~~~gli~~~~----~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGI---EISD----SEIYNYLTQLTKHSWIIKEG----EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCS---CCCH----HHHHHHHHHHHHTTSEEESS----SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCC---CCCH----HHHHHHHHHHHhCCCEEecC----CEEEecCHHHHHhh
Confidence 4444433221 1120 0011 22345788999999997642 4577 488888864
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=1.9e-13 Score=154.98 Aligned_cols=102 Identities=23% Similarity=0.145 Sum_probs=78.9
Q ss_pred CCCcEEEecCccCCCCCCCCCC--CCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCc--cChhhhcCCCcccEE
Q 040332 573 SNLRTLSLYYCKLLDISGIGDL--KKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEV--IPPHILSNLSHLEEL 648 (1210)
Q Consensus 573 ~~L~~L~L~~~~~~~~~~i~~L--~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~~l~~L~~L~~L 648 (1210)
..++.++++++.+. +..+..+ .+++.|++++|.+...+..+.++++|++|++++|. +.. +|. .++++++|++|
T Consensus 47 ~~~~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~-~~~~~~~L~~L 123 (336)
T 2ast_B 47 SLWQTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHG-ILSQCSKLQNL 123 (336)
T ss_dssp TTSSEEECTTCBCC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHH-HHTTBCCCSEE
T ss_pred hhheeeccccccCC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHH-HHhhCCCCCEE
Confidence 34789999988766 4445666 88999999999888887778889999999999984 443 444 36889999999
Q ss_pred EccCCCCccccccccccCccccccCCCCCEEEeecc
Q 040332 649 NIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIK 684 (1210)
Q Consensus 649 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 684 (1210)
++++|.+ .+..+..++.+++|+.|++++|
T Consensus 124 ~L~~~~l-------~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 124 SLEGLRL-------SDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp ECTTCBC-------CHHHHHHHTTCTTCSEEECTTC
T ss_pred eCcCccc-------CHHHHHHHhcCCCCCEEECCCC
Confidence 9998865 2344556777888888888766
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=2.7e-12 Score=132.42 Aligned_cols=130 Identities=18% Similarity=0.249 Sum_probs=107.4
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcc-cCcccCCCCCCCE
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQ-LPIEVGELICLKL 622 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~ 622 (1210)
+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++|++++|.+.. .|..++++++|++
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 466778999999999777665 68889999999999999886 8889999999999999998885 6778899999999
Q ss_pred EecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 623 LDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 623 L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
|++++|..++.+|. ++.+++|++|++++|.+. ....+..+++|+.|++++|.+.
T Consensus 141 L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~---------~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 141 IDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH---------DYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC---------CCTTGGGCSSCCEEEECBC---
T ss_pred EEccCCCCccccHh--hcCCCCCCEEECCCCCCc---------ChHHhccCCCCCEEEeeCcccC
Confidence 99999854888874 689999999999988762 1227888999999999988765
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.9e-12 Score=129.85 Aligned_cols=136 Identities=24% Similarity=0.222 Sum_probs=118.4
Q ss_pred CCcceEEEecCcccc--cCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcc-cCcccCCCCCCCEEec
Q 040332 549 MIQVRVINLSYVDLL--SLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQ-LPIEVGELICLKLLDL 625 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 625 (1210)
.+.|+.|++++|.+. .+|..+..+++|++|++++|.+.....++.+++|++|++++|.+.. +|..++++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 478999999999998 8999999999999999999998888889999999999999999998 7777788999999999
Q ss_pred CCCCCCCccCh-hhhcCCCcccEEEccCCCCccccccccccCc---cccccCCCCCEEEeeccCCCCCCCc
Q 040332 626 RDCSKLEVIPP-HILSNLSHLEELNIGDNSFYHWEVEVDGVKN---ASLNELKHLTSLQLRIKDINCLPRG 692 (1210)
Q Consensus 626 ~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~---~~l~~L~~L~~L~l~~~~~~~~~~~ 692 (1210)
++| .+..+|. ..++.+++|++|++++|.+. +..+ ..+..+++|+.|+++.|....+|..
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~-------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVT-------NLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGG-------TSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCc-------chHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999 7888763 34699999999999999772 2222 3788999999999999998877754
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=6e-12 Score=136.15 Aligned_cols=147 Identities=24% Similarity=0.257 Sum_probs=101.9
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEec
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDL 625 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 625 (1210)
+..+++|++|++++|.+..+| .+..+++|++|++++|.+...+.++++++|++|++++|.+..+|.... ++|++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 566777777777777777777 577777777777777777773337777777777777777777765333 77777777
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEE
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILI 705 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~ 705 (1210)
++| .+..++. ++++++|++|++++|.+. + ...+..+++|+.|++++|.+..++.-..+.+|+.+.+..
T Consensus 114 ~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~-------~--~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 114 DNN-ELRDTDS--LIHLKNLEILSIRNNKLK-------S--IVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CSS-CCSBSGG--GTTCTTCCEEECTTSCCC-------B--CGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEE
T ss_pred cCC-ccCCChh--hcCcccccEEECCCCcCC-------C--ChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCC
Confidence 777 6666653 577777777777777662 1 125677777777777777777664334566666666654
Q ss_pred cc
Q 040332 706 GD 707 (1210)
Q Consensus 706 ~~ 707 (1210)
+.
T Consensus 182 N~ 183 (263)
T 1xeu_A 182 QK 183 (263)
T ss_dssp EE
T ss_pred Cc
Confidence 43
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=4.3e-12 Score=133.26 Aligned_cols=130 Identities=21% Similarity=0.343 Sum_probs=95.8
Q ss_pred CcceEEEecCcccccCCc-cccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEec
Q 040332 550 IQVRVINLSYVDLLSLPS-SLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDL 625 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 625 (1210)
..|+.|++++|.+..+|. .+..+++|++|+|++|.+.. |..|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 467778888888777654 57777888888888887776 56678888888888888888877765 477888888888
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
++| .+..+++..+..+++|++|++++|.+ .+..+..+..+++|+.|++++|.+.
T Consensus 112 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NAN-KINCLRVDAFQDLHNLNLLSLYDNKL-------QTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCC-------SCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCC-CCCEeCHHHcCCCCCCCEEECCCCcC-------CEECHHHHhCCCCCCEEEeCCCCcC
Confidence 887 66677666667788888888887766 2333455777778888888777654
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=2e-12 Score=156.28 Aligned_cols=177 Identities=24% Similarity=0.231 Sum_probs=142.6
Q ss_pred ccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCCCCCC
Q 040332 512 KTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLDISGI 591 (1210)
Q Consensus 512 ~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i 591 (1210)
.+..+.....+++|+.|.+..+.. ..++ .|..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+..++.+
T Consensus 32 ~i~~~~~~~~L~~L~~L~l~~n~i---~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l 105 (605)
T 1m9s_A 32 SVTDAVTQNELNSIDQIIANNSDI---KSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSL 105 (605)
T ss_dssp CTTSEECHHHHTTCCCCBCTTCCC---CCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTS
T ss_pred CcccccchhcCCCCCEEECcCCCC---CCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhh
Confidence 333333445566777774443332 2333 37889999999999999999887 99999999999999999998899
Q ss_pred CCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccc
Q 040332 592 GDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLN 671 (1210)
Q Consensus 592 ~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 671 (1210)
+.+++|++|+|++|.+..+| .+..+++|+.|++++| .+..++. ++.+++|++|++++|.+. +..+ +.
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~-------~~~~--l~ 172 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS-------DIVP--LA 172 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCC-------CCGG--GT
T ss_pred ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCC-------Cchh--hc
Confidence 99999999999999999875 5999999999999999 7777743 799999999999999872 2222 88
Q ss_pred cCCCCCEEEeeccCCCCCCCccccccCceeEEEEcc
Q 040332 672 ELKHLTSLQLRIKDINCLPRGLFFEKLERYRILIGD 707 (1210)
Q Consensus 672 ~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~ 707 (1210)
.+++|+.|++++|.+..++.-..+.+|+.|.+..+.
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 999999999999999988765577788887765443
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=5.9e-12 Score=132.14 Aligned_cols=142 Identities=18% Similarity=0.281 Sum_probs=124.7
Q ss_pred eEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEecCCCC
Q 040332 553 RVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDLRDCS 629 (1210)
Q Consensus 553 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 629 (1210)
+.++++++.+..+|..+. .+|+.|++++|.+.. +..|..+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 578999999999998775 799999999999998 44799999999999999999988 678999999999999998
Q ss_pred CCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCcc--ccccCceeEEE
Q 040332 630 KLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL--FFEKLERYRIL 704 (1210)
Q Consensus 630 ~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~~~ 704 (1210)
.+..+|...+..+++|++|++++|.+ .+..+..+..+++|+.|++++|.+..++... .+.+|+.+.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKI-------NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCC-------CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 88999998889999999999999987 3455678999999999999999999888752 45667766554
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=1.2e-12 Score=141.62 Aligned_cols=167 Identities=24% Similarity=0.250 Sum_probs=132.6
Q ss_pred EEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCcc
Q 040332 505 SIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCK 584 (1210)
Q Consensus 505 ~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 584 (1210)
.+.+..+.+..++.+..+++|+.|.+..+... .++ .+..+++|++|++++|.+..+|. +..+++|++|++++|.
T Consensus 23 ~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~---~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 23 KQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ---SLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHTCSCTTSEECHHHHTTCSEEECTTSCCC---CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHhcCCCcccccchhhcCcCcEEECcCCCcc---cch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 33444445544555556666666644443222 233 36789999999999999999988 9999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccc
Q 040332 585 LLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDG 664 (1210)
Q Consensus 585 ~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~ 664 (1210)
+...+.+.. .+|++|++++|.+..+| .++++++|++|++++| .+..++. ++.+++|++|++++|.+..
T Consensus 97 l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~------- 164 (263)
T 1xeu_A 97 LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN------- 164 (263)
T ss_dssp CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB-------
T ss_pred cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc-------
Confidence 998555555 99999999999999986 5999999999999998 7888874 6999999999999998731
Q ss_pred cCccccccCCCCCEEEeeccCCCCCCC
Q 040332 665 VKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 665 ~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
. ..+..+++|+.|++++|.+...|.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred h--HHhccCCCCCEEeCCCCcccCCcc
Confidence 2 678899999999999998876653
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=5.5e-12 Score=133.41 Aligned_cols=130 Identities=25% Similarity=0.316 Sum_probs=92.1
Q ss_pred CcceEEEecCcccccC-CccccCCCCCcEEEecCccCCC-C-CCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEec
Q 040332 550 IQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD-I-SGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDL 625 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 625 (1210)
..|++|++++|.+..+ |..+..+++|++|+|++|.+.. + ..|..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 5677777777777766 5567777777777777777766 3 3367777777777777777777654 467777777777
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCC
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC 688 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 688 (1210)
++| .+..+|..+ ..+++|++|++++|.+. ...+..+..+++|+.|++++|.+..
T Consensus 120 s~N-~l~~lp~~~-~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCN-KLTELPRGI-ERLTHLTHLALDQNQLK-------SIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSS-CCCSCCTTG-GGCTTCSEEECCSSCCC-------CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCC-cccccCccc-ccCCCCCEEECCCCcCC-------ccCHHHHhCCCCCCEEEeeCCCccC
Confidence 777 666777663 77777777777777662 2333456777777777777776653
No 111
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.33 E-value=3.3e-13 Score=122.57 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=68.5
Q ss_pred HHHHHhhhcchhhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHhh
Q 040332 9 VVQVLKCLAPPAYRQISYLRESKYTSNLQNLKTEVESLKSERVSTQHLVDEAKRKG-EEIEENVENWLASANNVIVEADK 87 (1210)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~-~~~~~~~~~Wl~~~~~~~~~~ed 87 (1210)
++.++++|.+.+.+++..+ .++++++++|+++|..|+++|.+|+.+. ...+++++.|+++||+++||+||
T Consensus 3 v~~ll~KL~~ll~~E~~l~---------~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLH---------KGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------hchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888777 8999999999999999999999999874 34689999999999999999999
Q ss_pred ccchHHhh
Q 040332 88 FTDDEATA 95 (1210)
Q Consensus 88 ~~d~~~~~ 95 (1210)
++|+|.+.
T Consensus 74 ~iD~f~~~ 81 (115)
T 3qfl_A 74 VVDKFLVQ 81 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999765
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=6.4e-13 Score=153.63 Aligned_cols=265 Identities=17% Similarity=0.094 Sum_probs=151.9
Q ss_pred cceEEEecCcccccCCccccCCCCCcEEEecCccCCC--C----CCCCCCCCCcEEEeecCCCc----ccCccc------
Q 040332 551 QVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--I----SGIGDLKKLEFLCLRGCDIR----QLPIEV------ 614 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~----~lp~~i------ 614 (1210)
.|++..++...+..++..+..+++|++|+|++|.+.. + ..+..+++|++|++++|.+. .+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 4445455555556677777777778888888777665 2 23667778888888776544 234443
Q ss_pred -CCCCCCCEEecCCCCCCCc-----cChhhhcCCCcccEEEccCCCCccccccccccCccccccC---------CCCCEE
Q 040332 615 -GELICLKLLDLRDCSKLEV-----IPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNEL---------KHLTSL 679 (1210)
Q Consensus 615 -~~l~~L~~L~l~~~~~~~~-----~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L---------~~L~~L 679 (1210)
.++++|++|++++| .+.. +|.. +.++++|++|++++|.+.... .......+..+ ++|+.|
T Consensus 90 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQA---GAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HTTCTTCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHH---HHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HhhCCcccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHH---HHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 67888888888887 4544 4544 578888888888888762110 00122234444 888888
Q ss_pred EeeccCCCCCCCccccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccc--cchhh
Q 040332 680 QLRIKDINCLPRGLFFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEH--DVESF 757 (1210)
Q Consensus 680 ~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~ 757 (1210)
++++|.+...... . -...+..+++|+.|+++++... +...+
T Consensus 165 ~L~~n~l~~~~~~------------------------------------~-l~~~l~~~~~L~~L~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 165 ICGRNRLENGSMK------------------------------------E-WAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207 (386)
T ss_dssp ECCSSCCTGGGHH------------------------------------H-HHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred ECCCCCCCcHHHH------------------------------------H-HHHHHHhCCCcCEEECcCCCCCHhHHHHH
Confidence 8888776411100 0 0012334677888888875221 11112
Q ss_pred hh-hhhhcccccCcEEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCcccc
Q 040332 758 AN-ELVKVGSSQLKHLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCL 836 (1210)
Q Consensus 758 ~~-~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 836 (1210)
.. .+ ..+++|++|++++|...... ...+ +..+..+++|++|++++|.. ...
T Consensus 208 ~~~~l--~~~~~L~~L~Ls~n~l~~~g---------~~~l----------------~~~l~~~~~L~~L~L~~n~i-~~~ 259 (386)
T 2ca6_A 208 LLEGL--AYCQELKVLDLQDNTFTHLG---------SSAL----------------AIALKSWPNLRELGLNDCLL-SAR 259 (386)
T ss_dssp HHTTG--GGCTTCCEEECCSSCCHHHH---------HHHH----------------HHHGGGCTTCCEEECTTCCC-CHH
T ss_pred HHHHh--hcCCCccEEECcCCCCCcHH---------HHHH----------------HHHHccCCCcCEEECCCCCC-chh
Confidence 22 22 23688899998887532100 0000 12234557888888888763 221
Q ss_pred cc---chhh--hhcccccEEEEeccccccceecccccccccccc-ccccccceeecccCc
Q 040332 837 FS---SSIV--SSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNI-VMFPQLQYLEMSNLE 890 (1210)
Q Consensus 837 ~~---~~~~--~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~-~~~p~L~~L~l~~~~ 890 (1210)
.. ...+ +.+++|++|++++|. +....... .+..+ ..+|+|++|++++++
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~----l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRT----LKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHH----HHHHHHHHCTTCCEEECTTSB
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHH----HHHHHHhcCCCceEEEccCCc
Confidence 11 1112 227888888888876 44310000 01222 347888888888853
No 113
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=2.5e-12 Score=143.51 Aligned_cols=190 Identities=16% Similarity=0.112 Sum_probs=125.9
Q ss_pred ceeEEEecccccccC-C-Cc--CCCCchhHHHhhhcCCCCccc-ccchhhhcCCcceEEEecCcccccCC-ccccCCCCC
Q 040332 502 LYTSIVLRDVKTNLL-P-EL--VECPQLKLFLIHADKESPSLS-IANNFFERMIQVRVINLSYVDLLSLP-SSLVLLSNL 575 (1210)
Q Consensus 502 ~~~~l~l~~~~~~~l-~-~~--~~~~~Lr~L~~~~~~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L 575 (1210)
.++++.+.++.+... + .+ ..+++|+.|.+..+....... ++...+..+++|++|++++|.+..+| ..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 367778877776432 2 22 667788887666554433211 22233446788888888888887664 567788888
Q ss_pred cEEEecCccCCC------CCCCCCCCCCcEEEeecCCCcccCcc----cCCCCCCCEEecCCCCCCCcc-ChhhhcCC--
Q 040332 576 RTLSLYYCKLLD------ISGIGDLKKLEFLCLRGCDIRQLPIE----VGELICLKLLDLRDCSKLEVI-PPHILSNL-- 642 (1210)
Q Consensus 576 ~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~~-p~~~l~~L-- 642 (1210)
++|++++|.+.. +..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+... |.. ++.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPS-APRCMW 249 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSC-CSSCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhh-HHhccC
Confidence 888888887643 22346788888888888888766552 467788888888887 55554 554 3555
Q ss_pred -CcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEE
Q 040332 643 -SHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRI 703 (1210)
Q Consensus 643 -~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~ 703 (1210)
++|++|++++|.+. ..+..+. ++|+.|++++|.+..+|....+.+|+.+.+
T Consensus 250 ~~~L~~L~Ls~N~l~--------~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 250 SSALNSLNLSFAGLE--------QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp CTTCCCEECCSSCCC--------SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred cCcCCEEECCCCCCC--------chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence 58888888888762 2333443 678888888888877665445566666554
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=3.6e-13 Score=155.69 Aligned_cols=140 Identities=15% Similarity=0.040 Sum_probs=99.7
Q ss_pred hhhhcCCcceEEEecCccccc-----CCccccCCCCCcEEEecCccCCC-----CCC-------CCCCCCCcEEEeecCC
Q 040332 544 NFFERMIQVRVINLSYVDLLS-----LPSSLVLLSNLRTLSLYYCKLLD-----ISG-------IGDLKKLEFLCLRGCD 606 (1210)
Q Consensus 544 ~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~-----~~~-------i~~L~~L~~L~l~~~~ 606 (1210)
..+..+++|++|++++|.+.. ++..+..+++|++|+|++|.+.. |.. +..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 345778889999999988774 45557788899999999875543 223 3688999999999998
Q ss_pred Ccc-----cCcccCCCCCCCEEecCCCCCCCccChhh----hcCC---------CcccEEEccCCCCccccccccccCcc
Q 040332 607 IRQ-----LPIEVGELICLKLLDLRDCSKLEVIPPHI----LSNL---------SHLEELNIGDNSFYHWEVEVDGVKNA 668 (1210)
Q Consensus 607 l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~~----l~~L---------~~L~~L~l~~n~~~~~~~~~~~~~~~ 668 (1210)
+.. +|..+.++++|++|++++| .+....... +..+ ++|++|++++|.+.... ......
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~l~~ 181 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS---MKEWAK 181 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG---HHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH---HHHHHH
Confidence 875 7778888899999999988 554322222 2333 88999999988762100 001124
Q ss_pred ccccCCCCCEEEeeccCCC
Q 040332 669 SLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 669 ~l~~L~~L~~L~l~~~~~~ 687 (1210)
.+..+++|+.|++++|.+.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHHCTTCCEEECCSSCCC
T ss_pred HHHhCCCcCEEECcCCCCC
Confidence 6777889999999888765
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=1.2e-11 Score=129.02 Aligned_cols=104 Identities=28% Similarity=0.379 Sum_probs=47.8
Q ss_pred cceEEEecCcccccCCcc-ccCCCCCcEEEecCccCCC-CC-CCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEecC
Q 040332 551 QVRVINLSYVDLLSLPSS-LVLLSNLRTLSLYYCKLLD-IS-GIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDLR 626 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~-~~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~ 626 (1210)
+|++|++++|.+..+|.. +..+++|++|++++|.+.. +. .+..+++|++|++++|.+..+|.. ++++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 444555555544444332 3444455555555544444 22 234445555555554444444432 3444455555554
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCC
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
+| .+..+++..++++++|++|++++|.+
T Consensus 109 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 109 TN-QLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CC-cCcccCHhHhccCCcCCEEECCCCcc
Confidence 44 34444444334444444444444433
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=1.7e-11 Score=129.69 Aligned_cols=141 Identities=24% Similarity=0.341 Sum_probs=122.8
Q ss_pred ceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEecCCC
Q 040332 552 VRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDLRDC 628 (1210)
Q Consensus 552 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 628 (1210)
-..++++++.+..+|..+. .+|++|++++|.+.. +..|..+.+|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4568999999999998775 899999999999998 66799999999999999999999865 689999999999999
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCcc--ccccCceeEE
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL--FFEKLERYRI 703 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~~ 703 (1210)
.+..+|...++.+++|++|++++|.+. ..+..+..+++|+.|++++|.+..++... .+.+|+.+.+
T Consensus 99 -~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 99 -QLTVLPSAVFDRLVHLKELFMCCNKLT--------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCC--------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -cCCccChhHhCcchhhCeEeccCCccc--------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 888999887899999999999999872 56678899999999999999999888652 4556666554
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=129.00 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=99.7
Q ss_pred cceEEEecCcccccCC--ccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEec
Q 040332 551 QVRVINLSYVDLLSLP--SSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDL 625 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 625 (1210)
.+++|++++|.+..++ ..+..+++|++|++++|.+.. +..|.++.+|++|++++|.+..+|.. ++.+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 3578888888888773 337788888888888888877 34688888888888888888877654 788888888888
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
++| .+..+++..+..+++|++|++++|.+ .+..+..+..+++|+.|++++|.+.
T Consensus 113 s~N-~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 113 RSN-RITCVGNDSFIGLSSVRLLSLYDNQI-------TTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTS-CCCCBCTTSSTTCTTCSEEECTTSCC-------CCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCC-cCCeECHhHcCCCccCCEEECCCCcC-------CEECHHHhcCCCCCCEEEecCcCCc
Confidence 887 67777655568888888888888876 3344667788888888888877654
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=129.81 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=119.5
Q ss_pred eEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccc-cchhhhcCCcceEEEecCcccccCCc-cccCCCCCcEEEec
Q 040332 504 TSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSI-ANNFFERMIQVRVINLSYVDLLSLPS-SLVLLSNLRTLSLY 581 (1210)
Q Consensus 504 ~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~ 581 (1210)
+.+.+.++.+..+|... .+.++.|.+..+. ...+ +..+|..++.|++|++++|.+..++. .+..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNE---FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC---CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCc---CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 36777777777776422 3345566444332 2233 44668999999999999999998865 79999999999999
Q ss_pred CccCCC-C-CCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCC
Q 040332 582 YCKLLD-I-SGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 582 ~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
+|.+.. + ..|+.+++|++|++++|.+..+ |..+..+++|++|++++| .+..+++..+..+++|++|++++|.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 999998 4 4599999999999999999988 568999999999999998 78888666689999999999999976
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=1.2e-11 Score=147.62 Aligned_cols=165 Identities=16% Similarity=0.195 Sum_probs=110.8
Q ss_pred CcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCC
Q 040332 550 IQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDC 628 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 628 (1210)
++|++|++++|.+..+| ..+++|++|++++|.+.. |. +++ +|++|++++|.++.+|. .+++|++|++++|
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCC
Confidence 45778888888887777 446778888888887777 44 555 78888888887777776 5777888888877
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCccccccCceeEEEEccc
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGLFFEKLERYRILIGDF 708 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~ 708 (1210)
.+..+|. .+++|++|++++|.+. ..+. +. ++|+.|++++|.+..+|. +. .+|
T Consensus 151 -~l~~lp~----~l~~L~~L~Ls~N~L~--------~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~-~~L---------- 202 (571)
T 3cvr_A 151 -QLTMLPE----LPTSLEVLSVRNNQLT--------FLPE-LP--ESLEALDVSTNLLESLPA-VP-VRN---------- 202 (571)
T ss_dssp -CCSCCCC----CCTTCCEEECCSSCCS--------CCCC-CC--TTCCEEECCSSCCSSCCC-CC--------------
T ss_pred -ccCcCCC----cCCCcCEEECCCCCCC--------Ccch-hh--CCCCEEECcCCCCCchhh-HH-Hhh----------
Confidence 6666765 4677888888877662 1233 44 778888888887776665 21 111
Q ss_pred ccccCcCCcceEEecCCcccchHHHHHHHhccccEEeecccccccchhhhhhhhhcccccCcEEEeeCCccccc
Q 040332 709 WNWKYNICSRDFRIGLSKRICLKDVLIVQLQGIEHLGLYGLQEHDVESFANELVKVGSSQLKHLWIEGCHEAHD 782 (1210)
Q Consensus 709 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 782 (1210)
....+.|+.|+++++ .++.++..+.. +++|+.|++++|+....
T Consensus 203 --------------------------~~~~~~L~~L~Ls~N---~l~~lp~~l~~--l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 203 --------------------------HHSEETEIFFRCREN---RITHIPENILS--LDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -------------------------------CCEEEECCSS---CCCCCCGGGGG--SCTTEEEECCSSSCCHH
T ss_pred --------------------------hcccccceEEecCCC---cceecCHHHhc--CCCCCEEEeeCCcCCCc
Confidence 011244577888774 55556555543 78999999999875443
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.26 E-value=3.6e-11 Score=125.33 Aligned_cols=164 Identities=21% Similarity=0.244 Sum_probs=123.6
Q ss_pred EEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCcc-ccCCCCCcEEEecCc
Q 040332 505 SIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSS-LVLLSNLRTLSLYYC 583 (1210)
Q Consensus 505 ~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~ 583 (1210)
.+....+.+..+|.. -.++++.|.+..+.. ..++...|..+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTG-IPAQTTYLDLETNSL---KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccCCCCC-CCCCCcEEEcCCCcc---CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 344455555555532 245777775554432 356667788899999999999999988765 578999999999999
Q ss_pred cCCC-CC-CCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccc
Q 040332 584 KLLD-IS-GIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEV 660 (1210)
Q Consensus 584 ~~~~-~~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~ 660 (1210)
.+.. +. .++++++|++|++++|.+..+|.. +.++++|++|++++| .+..++...++.+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee----
Confidence 9888 43 478999999999999999988765 688999999999998 777888877788999999999988651
Q ss_pred cccccCccccccCCCCCEEEeeccCCC
Q 040332 661 EVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 661 ~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
+.+++|+.|+++.|.+.
T Consensus 162 ----------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 ----------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp ----------CCTTTTHHHHHHHHHCT
T ss_pred ----------cCCCCHHHHHHHHHhCC
Confidence 23456666666655544
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=7.2e-12 Score=122.68 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=108.9
Q ss_pred cCCcceEEEecCcccc--cCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcc-cCcccCCCCCCCEEe
Q 040332 548 RMIQVRVINLSYVDLL--SLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQ-LPIEVGELICLKLLD 624 (1210)
Q Consensus 548 ~l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~ 624 (1210)
..++|+.|++++|.+. .+|..+..+++|++|++++|.+.....++.+++|++|++++|.+.. +|..++++++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3578999999999998 8999999999999999999999888889999999999999999998 787788899999999
Q ss_pred cCCCCCCCccCh-hhhcCCCcccEEEccCCCCccccccccccCc---cccccCCCCCEEEee
Q 040332 625 LRDCSKLEVIPP-HILSNLSHLEELNIGDNSFYHWEVEVDGVKN---ASLNELKHLTSLQLR 682 (1210)
Q Consensus 625 l~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~---~~l~~L~~L~~L~l~ 682 (1210)
+++| .+..+|. ..++.+++|++|++++|.+. +..+ ..+..+++|+.|+++
T Consensus 95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVT-------NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGG-------GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCC-cCCChHHHHHHhhCCCCCEEeCcCCccc-------chHHHHHHHHHHCCCcccccCC
Confidence 9998 6777652 34699999999999999762 2222 468889999998765
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=2.2e-11 Score=124.78 Aligned_cols=125 Identities=26% Similarity=0.310 Sum_probs=102.2
Q ss_pred eEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCC--CCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEecCCC
Q 040332 553 RVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISG--IGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDLRDC 628 (1210)
Q Consensus 553 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~--i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 628 (1210)
++++++++.+..+|..+.. +|++|++++|.+.. ++. ++.+++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888888887654 88899999998887 442 78889999999999988877 667888899999999888
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
.+..+++..++.+++|++|++++|.+ .+..+..+..+++|+.|++++|.+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQI-------SCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCC-------CEECTTSSTTCTTCCEEECTTCCBC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcC-------CeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77777777678889999999998877 3455677888888999998888765
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=1.6e-12 Score=148.55 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=97.6
Q ss_pred chhhhcCCcceEEEecCcccccCC-----ccccCCC-CCcEEEecCccCCC--CCCCCCC-----CCCcEEEeecCCCcc
Q 040332 543 NNFFERMIQVRVINLSYVDLLSLP-----SSLVLLS-NLRTLSLYYCKLLD--ISGIGDL-----KKLEFLCLRGCDIRQ 609 (1210)
Q Consensus 543 ~~~~~~l~~Lr~L~l~~~~~~~lp-----~~i~~l~-~L~~L~L~~~~~~~--~~~i~~L-----~~L~~L~l~~~~l~~ 609 (1210)
+.++...+.|++|++++|.+...+ +.+..++ +|++|+|++|.+.. +..+..+ ++|++|++++|.+..
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 344555666999999999888776 5677888 89999999998876 4445554 889999999998875
Q ss_pred cCcc-----cCCC-CCCCEEecCCCCCCCccChhhh----cC-CCcccEEEccCCCCccccccccccCccccccCC-CCC
Q 040332 610 LPIE-----VGEL-ICLKLLDLRDCSKLEVIPPHIL----SN-LSHLEELNIGDNSFYHWEVEVDGVKNASLNELK-HLT 677 (1210)
Q Consensus 610 lp~~-----i~~l-~~L~~L~l~~~~~~~~~p~~~l----~~-L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~-~L~ 677 (1210)
.+.. +..+ ++|++|++++| .++..+...+ .. .++|++|++++|.+.... .......+..+. +|+
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~---~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS---SDELIQILAAIPANVN 170 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC---HHHHHHHHHTSCTTCC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH---HHHHHHHHhcCCcccc
Confidence 5432 4455 78999999888 5666665432 33 368888888888762110 012233444554 788
Q ss_pred EEEeeccCCCC
Q 040332 678 SLQLRIKDINC 688 (1210)
Q Consensus 678 ~L~l~~~~~~~ 688 (1210)
.|++++|.+..
T Consensus 171 ~L~Ls~n~l~~ 181 (362)
T 3goz_A 171 SLNLRGNNLAS 181 (362)
T ss_dssp EEECTTSCGGG
T ss_pred EeeecCCCCch
Confidence 88888776653
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=6.3e-11 Score=135.07 Aligned_cols=130 Identities=23% Similarity=0.253 Sum_probs=78.5
Q ss_pred eEEEecCcccccCCccccCCCCCcEEEecCccCCC-C-CCCC-CCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecCCC
Q 040332 553 RVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-I-SGIG-DLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLRDC 628 (1210)
Q Consensus 553 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~-~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 628 (1210)
++++++++.+..+|..+. .++++|+|++|.+.. + ..+. ++.+|++|++++|.+..+|. .+.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666666665543 346666666666665 2 2344 66666666666666666653 4666666666666666
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCc
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRG 692 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 692 (1210)
.+..++...+..+++|++|++++|.+ ....+..|..+++|+.|++++|.+..+|..
T Consensus 99 -~l~~~~~~~~~~l~~L~~L~L~~N~i-------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 99 -HLHTLDEFLFSDLQALEVLLLYNNHI-------VVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCC-------CEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred -cCCcCCHHHhCCCcCCCEEECCCCcc-------cEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 56666655556666666666666655 223345566666666666666666655543
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=2.3e-11 Score=138.70 Aligned_cols=132 Identities=22% Similarity=0.283 Sum_probs=74.6
Q ss_pred ceEEEecCcccccCCcc-cc-CCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecC
Q 040332 552 VRVINLSYVDLLSLPSS-LV-LLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLR 626 (1210)
Q Consensus 552 Lr~L~l~~~~~~~lp~~-i~-~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 626 (1210)
+++|+|++|.+..+|.. +. .+.+|++|+|++|.+.. +..|.++++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 55666666666655443 33 56666666666666665 2346666666666666666665544 35666666666666
Q ss_pred CCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCcccc---ccCCCCCEEEeeccCCCCCCC
Q 040332 627 DCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASL---NELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 627 ~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l---~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
+| .+..+++..+..+++|++|++++|.+.. .....+ ..+++|+.|++++|.+..++.
T Consensus 121 ~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 121 NN-HIVVVDRNAFEDMAQLQKLYLSQNQISR-------FPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp SS-CCCEECTTTTTTCTTCCEEECCSSCCCS-------CCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CC-cccEECHHHhCCcccCCEEECCCCcCCe-------eCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 65 5555554445666666666666665521 111112 456666666666666665553
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=2.1e-11 Score=123.11 Aligned_cols=132 Identities=16% Similarity=0.180 Sum_probs=110.5
Q ss_pred hhcCCcceEEEecCcccccCCccccCCC-CCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCccc-CCCCCCCEE
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLS-NLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEV-GELICLKLL 623 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L 623 (1210)
|..+..|+.|++++|.+..+|. +..+. +|++|++++|.+...+.++.+++|++|++++|.+..+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4567889999999999998875 55555 99999999999888778999999999999999999998766 899999999
Q ss_pred ecCCCCCCCccCh-hhhcCCCcccEEEccCCCCccccccccccCcc----ccccCCCCCEEEeeccCCC
Q 040332 624 DLRDCSKLEVIPP-HILSNLSHLEELNIGDNSFYHWEVEVDGVKNA----SLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 624 ~l~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~----~l~~L~~L~~L~l~~~~~~ 687 (1210)
++++| .++.+|. ..++.+++|++|++++|.+. ..+. .+..+++|+.|+++.|...
T Consensus 94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~--------~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPVT--------NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGG--------GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCC--------CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99998 7788886 23689999999999999772 2233 4888999999998877543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=6.4e-11 Score=121.17 Aligned_cols=103 Identities=24% Similarity=0.346 Sum_probs=48.6
Q ss_pred cceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecCC
Q 040332 551 QVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLRD 627 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~ 627 (1210)
.|++|++++|.+..+|..+..+++|++|+|++|.+.. +..|.++.+|++|++++|.+..+|. .+..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 3444555555544444444445555555555554444 2234444555555555544444433 344444455555444
Q ss_pred CCCCCccChhhhcCCCcccEEEccCCC
Q 040332 628 CSKLEVIPPHILSNLSHLEELNIGDNS 654 (1210)
Q Consensus 628 ~~~~~~~p~~~l~~L~~L~~L~l~~n~ 654 (1210)
| .+..+|...+..+++|++|++.+|.
T Consensus 112 N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 112 N-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp S-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CCCeeChhhhhcCccccEEEeCCCC
Confidence 4 4444444434444444444444443
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=6.5e-13 Score=159.64 Aligned_cols=182 Identities=21% Similarity=0.241 Sum_probs=135.9
Q ss_pred cceeEEEecccccccCC-CcCCCCchhHHHhhhcC----------CCCcccccchhhhcCCcceEEE-ecCcccccCCc-
Q 040332 501 KLYTSIVLRDVKTNLLP-ELVECPQLKLFLIHADK----------ESPSLSIANNFFERMIQVRVIN-LSYVDLLSLPS- 567 (1210)
Q Consensus 501 ~~~~~l~l~~~~~~~l~-~~~~~~~Lr~L~~~~~~----------~~~~~~~~~~~~~~l~~Lr~L~-l~~~~~~~lp~- 567 (1210)
+.++++.++.+.+..+| .+..+++|+.|.+..+. .......++..++.+.+|+.|+ ++.+.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 34556777777777776 35677778777542211 0012234455677888888888 56554433321
Q ss_pred -----cccC--CCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhc
Q 040332 568 -----SLVL--LSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILS 640 (1210)
Q Consensus 568 -----~i~~--l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~ 640 (1210)
.+.. ...|++|+|++|.+...+.|+.+++|++|++++|.++.+|..++++++|++|++++| .+..+| . ++
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~ 505 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G-VA 505 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GT
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cC
Confidence 1111 125999999999999944599999999999999999999999999999999999998 788888 4 69
Q ss_pred CCCcccEEEccCCCCccccccccccC-ccccccCCCCCEEEeeccCCCCCCCc
Q 040332 641 NLSHLEELNIGDNSFYHWEVEVDGVK-NASLNELKHLTSLQLRIKDINCLPRG 692 (1210)
Q Consensus 641 ~L~~L~~L~l~~n~~~~~~~~~~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~ 692 (1210)
++++|++|++++|.+ .+.. +..++.+++|+.|++++|.+...|..
T Consensus 506 ~l~~L~~L~Ls~N~l-------~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 506 NLPRLQELLLCNNRL-------QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TCSSCCEEECCSSCC-------CSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCcEEECCCCCC-------CCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 999999999999987 2333 78899999999999999998877653
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.18 E-value=9.8e-11 Score=139.71 Aligned_cols=170 Identities=19% Similarity=0.277 Sum_probs=112.1
Q ss_pred ceeEEEecccccccCCCcCCCCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEEEec
Q 040332 502 LYTSIVLRDVKTNLLPELVECPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLY 581 (1210)
Q Consensus 502 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 581 (1210)
+++.+.+.++.+..+|... +++|+.|.+..+... .+| ..+++|++|++++|.+..+|. ++. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~---~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI---SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS---CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc---ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 4667777777776666522 366777755444332 344 235778888888888888777 655 78888888
Q ss_pred CccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCcccccc
Q 040332 582 YCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVE 661 (1210)
Q Consensus 582 ~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~ 661 (1210)
+|.+...+. .+++|++|++++|.++.+|. .+++|++|++++| .+..+|. ++ ++|++|++++|.+.
T Consensus 129 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~----- 193 (571)
T 3cvr_A 129 NNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLE----- 193 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCS-----
T ss_pred CCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCC-----
Confidence 888777332 67788888888888887776 5677888888887 6667776 34 78888888877663
Q ss_pred ccccCccccccCCCC-------CEEEeeccCCCCCCCcc-ccccCceeEE
Q 040332 662 VDGVKNASLNELKHL-------TSLQLRIKDINCLPRGL-FFEKLERYRI 703 (1210)
Q Consensus 662 ~~~~~~~~l~~L~~L-------~~L~l~~~~~~~~~~~~-~~~~L~~l~~ 703 (1210)
..+. +.. +| +.|++++|.+..+|..+ .+.+|+.+.+
T Consensus 194 ---~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 194 ---SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp ---SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred ---chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 2222 332 45 78888888888777653 4445544433
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=119.11 Aligned_cols=125 Identities=22% Similarity=0.289 Sum_probs=111.1
Q ss_pred eEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecCCCCC
Q 040332 553 RVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLRDCSK 630 (1210)
Q Consensus 553 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 630 (1210)
++++++++.+..+|..+. .+|++|++++|.+.. |..|.++.+|++|++++|.++.++. .+.++++|++|++++| .
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence 578999999999998764 689999999999998 7889999999999999999998875 6899999999999998 7
Q ss_pred CCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 631 LEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 631 ~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
+..+++..++.+++|++|++++|.+. ...+..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-------VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC-------BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC-------eeChhhhhcCccccEEEeCCCCee
Confidence 88888877899999999999999872 334456888999999999999876
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=3.6e-11 Score=149.42 Aligned_cols=154 Identities=20% Similarity=0.253 Sum_probs=100.1
Q ss_pred cceeEEEecccccccCC-CcCCCCchhHHHhhhcCC-CCcccccchhhhcCCcceEEEecCcccccCCccccCCCCCcEE
Q 040332 501 KLYTSIVLRDVKTNLLP-ELVECPQLKLFLIHADKE-SPSLSIANNFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTL 578 (1210)
Q Consensus 501 ~~~~~l~l~~~~~~~l~-~~~~~~~Lr~L~~~~~~~-~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 578 (1210)
..++++.+..+.+...+ .......|+.+.+..... ...+.++...|..+..|++|+|++|.+..+|..+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 34677777776665544 233444455443322211 1123466777899999999999999999999999999999999
Q ss_pred EecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCc
Q 040332 579 SLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFY 656 (1210)
Q Consensus 579 ~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~ 656 (1210)
+|++|.+.. |..|++|.+|++|+|++|.++.+|..+++|++|++|++++| .++.+|.. +++|++|++|++++|.+.
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 999999988 88899999999999999999999999999999999999998 78899988 699999999999999873
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.14 E-value=2.1e-09 Score=124.07 Aligned_cols=277 Identities=12% Similarity=0.065 Sum_probs=162.2
Q ss_pred ccccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc----CC--CCeEEEEEecCCc-CHHHH
Q 040332 154 EAFESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD----KI--FDQVVFAEVSQSQ-DIRKI 222 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~ 222 (1210)
..++||+++++++..++. ....+.+.|+|++|+||||+|+.+++..... .. ....+|+.++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 678999999999887765 3456799999999999999999999876432 11 2346788877766 78888
Q ss_pred HHHHHHHh-CCCcccCCc--cc--c------cCccEEEEEeCCCCccc---hhh-hcccCCCCCCCeEEEEeeCchhhh-
Q 040332 223 QGEIADKL-GLKFHEESE--PG--R------EEKKILVILDNIWENLD---LRV-VGIPHGDDHRGCKILLTARSLDVL- 286 (1210)
Q Consensus 223 ~~~i~~~l-~~~~~~~~~--~~--~------~~kr~LlvlDdv~~~~~---~~~-~~~~~~~~~~gs~iivTtR~~~v~- 286 (1210)
+..++.++ +........ .. . ..++.+||+||++.... .+. +...+... .+..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 88888887 222111110 00 0 33444999999986422 122 11111111 678899999875321
Q ss_pred ---hhc-CCCcceeeecCCCHHHHHHHHHHHhCC-CCCCchHHHHHHHHHHHhC---Ccch-HHHHHHHHH--H---cCC
Q 040332 287 ---SRK-MDSQQNFAVGILKEVEAWSLFKKMAGD-YIEGSEFQLVAREVEKECA---GLPV-SIVTVARAL--R---NNK 352 (1210)
Q Consensus 287 ---~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~l--~---~~~ 352 (1210)
... ..-...+.+++++.++..++|..++.. .....--.+..+.|++.++ |.|- |+..+-.+. + ..-
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 110 011138999999999999999987531 1111111234567777887 8776 444443333 2 123
Q ss_pred ChHHHHHHHHHhcCCCCCCccccchhHHHHHHhhhcCCCccchhhhHhhhcc-CccccH-HHHHHHHhhcCcCCCCCcHH
Q 040332 353 SLFDWKDALEQLRRPPLKNFMNIQPNAHKAIKLSYDNLGGEELKNVFLLIGY-TVIESI-DDLLMYGMGLGLFQGVSKME 430 (1210)
Q Consensus 353 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~-fp~~~~-~~Li~~w~a~g~~~~~~~~e 430 (1210)
+.+.+..+++... ...+.-+++.|+++ -+..+..++. +-+-+. +.........| ... .+.
T Consensus 259 ~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~~~~~~~~~~~g-~~~-~~~- 320 (384)
T 2qby_B 259 RKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLIESEDVMSAHKMYTDLCNKFK-QKP-LSY- 320 (384)
T ss_dssp CHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHHHHHHHHHHHTT-CCC-CCH-
T ss_pred CHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHHhcccChHHHHHHHHHHHcC-CCC-CCH-
Confidence 5666666665431 23456677888874 3444444444 211011 11112222223 111 112
Q ss_pred HHHHHHHHHHHHHHhhcceeec
Q 040332 431 EARARVHTLVHKLKASCMLLDH 452 (1210)
Q Consensus 431 ~~~~~~~~~~~~L~~~~ll~~~ 452 (1210)
..+.++++.|...+++...
T Consensus 321 ---~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 321 ---RRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---HHHHHHHHHHHHTTSEEEE
T ss_pred ---HHHHHHHHHHHhCCCEEEE
Confidence 3345678999999999764
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=1.4e-11 Score=140.78 Aligned_cols=126 Identities=18% Similarity=0.197 Sum_probs=84.8
Q ss_pred EEEecCcccccC-CccccCCCCCcEEEecCccCCC-C-----CCCCCCC-CCcEEEeecCCCccc-CcccCCC-----CC
Q 040332 554 VINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD-I-----SGIGDLK-KLEFLCLRGCDIRQL-PIEVGEL-----IC 619 (1210)
Q Consensus 554 ~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~-~-----~~i~~L~-~L~~L~l~~~~l~~l-p~~i~~l-----~~ 619 (1210)
+++++.+.+... |..+....+|++|++++|.+.. + ..+.+++ +|++|++++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 457778887754 4445555669999999988877 3 4577787 888888888888755 3344443 88
Q ss_pred CCEEecCCCCCCCccChhh----hcCC-CcccEEEccCCCCccccccccccCcc----ccccC-CCCCEEEeeccCCC
Q 040332 620 LKLLDLRDCSKLEVIPPHI----LSNL-SHLEELNIGDNSFYHWEVEVDGVKNA----SLNEL-KHLTSLQLRIKDIN 687 (1210)
Q Consensus 620 L~~L~l~~~~~~~~~p~~~----l~~L-~~L~~L~l~~n~~~~~~~~~~~~~~~----~l~~L-~~L~~L~l~~~~~~ 687 (1210)
|++|++++| .+...+... +..+ ++|++|++++|.+. +.... .+..+ ++|+.|++++|.+.
T Consensus 82 L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 82 VTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-------SKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-------GSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred ccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCC-------cHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 888888888 566555442 2344 78888888888762 22222 23332 57888888877655
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=1.2e-10 Score=116.52 Aligned_cols=109 Identities=25% Similarity=0.381 Sum_probs=94.9
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCC-CCCCCCCcEEEeecCCCcccC--cccCCCCCCC
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISG-IGDLKKLEFLCLRGCDIRQLP--IEVGELICLK 621 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~ 621 (1210)
|..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. ++. +.++++|++|++++|.+..+| ..+..+++|+
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 57788999999999999988 778999999999999999988 444 556999999999999999887 6889999999
Q ss_pred EEecCCCCCCCccCh---hhhcCCCcccEEEccCCCCc
Q 040332 622 LLDLRDCSKLEVIPP---HILSNLSHLEELNIGDNSFY 656 (1210)
Q Consensus 622 ~L~l~~~~~~~~~p~---~~l~~L~~L~~L~l~~n~~~ 656 (1210)
+|++++| .+..+|. ..+..+++|++|++.+|...
T Consensus 124 ~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 124 SLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999998 7777776 45799999999999988763
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.12 E-value=9.4e-10 Score=118.27 Aligned_cols=189 Identities=10% Similarity=0.106 Sum_probs=123.9
Q ss_pred CcccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCeEEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSDKI-------------------FDQVVFA 211 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv 211 (1210)
....++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++....... +...+.+
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 45678999999999999887443 458999999999999999999987653211 1122233
Q ss_pred EecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchhhh-hh
Q 040332 212 EVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLDVL-SR 288 (1210)
Q Consensus 212 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~v~-~~ 288 (1210)
..... .......++.+.+.... ..+++.+||+||++.. ..++.+...+.....+..+|+||+..... ..
T Consensus 101 ~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 101 DAASR-TKVEDTRDLLDNVQYAP-------ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp ETTCG-GGHHHHHHHHHSCCCSC-------SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred cCccc-ccHHHHHHHHHHhhhch-------hcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 22221 22233344444332111 1467899999999753 45555544444444578899988764422 11
Q ss_pred cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 040332 289 KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALR 349 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 349 (1210)
.......+.+++++.++..+++...+...... --.+..+.|++.++|.|..+..+...+.
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12234689999999999999999877422111 1235577899999999999887765543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=5e-10 Score=113.14 Aligned_cols=127 Identities=26% Similarity=0.367 Sum_probs=90.3
Q ss_pred ceEEEecCcccccCCccccCCCCCcEEEecCccCCC-C-CCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEecCCC
Q 040332 552 VRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-I-SGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDLRDC 628 (1210)
Q Consensus 552 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 628 (1210)
.+.++++++.+..+|..+. .+|++|++++|.+.. + ..++.+.+|++|++++|.+..+|.. ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3567777777777776543 578888888887777 3 3467778888888888877777654 577888888888877
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCC
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC 688 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 688 (1210)
.+..+|...++.+++|++|++++|.+. +..+..+..+++|+.|++++|.+..
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 -KLQSLPNGVFDKLTQLKELALDTNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -CccccCHHHhhCCcccCEEECcCCcce-------EeCHHHhcCCcccCEEEecCCCeec
Confidence 677777766677788888888877662 2333445677788888887776553
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=2.7e-10 Score=116.65 Aligned_cols=104 Identities=23% Similarity=0.276 Sum_probs=92.5
Q ss_pred cceEEEecCcccccCCcc--ccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEec
Q 040332 551 QVRVINLSYVDLLSLPSS--LVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDL 625 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~--i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 625 (1210)
.|++|++++|.+..+|.. +..+++|++|+|++|.+.. |..|+++.+|++|++++|.+..+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788999999999988764 8999999999999999988 66799999999999999999988764 889999999999
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCC
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
++| .+..+++..++.+++|++|++++|.+
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 998 77777666679999999999999977
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=3.7e-11 Score=121.32 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=93.7
Q ss_pred CCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCC-CCCCCCcEEEeecCCCcccCc--ccCCCCCCCEEe
Q 040332 549 MIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGI-GDLKKLEFLCLRGCDIRQLPI--EVGELICLKLLD 624 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i-~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~ 624 (1210)
.+.|++|++++|.+..+ ..+..+++|++|++++|.+.. |+.+ +.+++|++|++++|.+..+|. .++.+++|++|+
T Consensus 41 ~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 44899999999999988 679999999999999999998 6554 899999999999999999987 889999999999
Q ss_pred cCCCCCCCccChh---hhcCCCcccEEEccCCCC
Q 040332 625 LRDCSKLEVIPPH---ILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 625 l~~~~~~~~~p~~---~l~~L~~L~~L~l~~n~~ 655 (1210)
+++| .+..+|.. +++.+++|++|++++|..
T Consensus 120 l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9998 67788875 468999999999998865
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.07 E-value=1.7e-09 Score=114.32 Aligned_cols=191 Identities=11% Similarity=0.061 Sum_probs=123.7
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHh
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKL 230 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 230 (1210)
.....++||++.++.+.+++.....+.+.|+|.+|+|||++|+.+++.......-...+.+..+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34567899999999999999876665699999999999999999998764321112244455555555544444333332
Q ss_pred CCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchhhh-hhcCCCcceeeecCCCHHHHH
Q 040332 231 GLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLDVL-SRKMDSQQNFAVGILKEVEAW 307 (1210)
Q Consensus 231 ~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~v~-~~~~~~~~~~~l~~L~~~~~~ 307 (1210)
... ....+++.+||+||++.. ..++.+...+.....+.++|+||+..... .........+.+.+++.++..
T Consensus 94 ~~~------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~ 167 (226)
T 2chg_A 94 RTA------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMK 167 (226)
T ss_dssp TSC------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred ccc------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHH
Confidence 211 011367889999999865 33344433333334577899988865321 111222347899999999999
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHH
Q 040332 308 SLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARAL 348 (1210)
Q Consensus 308 ~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 348 (1210)
+++.+.+...... --.+..+.|++.++|.|..+..+...+
T Consensus 168 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 168 KRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9998877421111 113456788899999998665544443
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=7.3e-10 Score=111.05 Aligned_cols=100 Identities=23% Similarity=0.366 Sum_probs=88.0
Q ss_pred eEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEecCCCC
Q 040332 553 RVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDLRDCS 629 (1210)
Q Consensus 553 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 629 (1210)
+.++++++.+..+|..+. .+|++|+|++|.+.. |..|+++++|++|++++|++..+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 688999999999998775 899999999999988 55689999999999999999999876 488999999999998
Q ss_pred CCCccChhhhcCCCcccEEEccCCCC
Q 040332 630 KLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 630 ~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
.+..+|+..++.+++|++|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 78888887678899999999998876
No 141
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=1.6e-10 Score=112.94 Aligned_cols=104 Identities=23% Similarity=0.294 Sum_probs=89.6
Q ss_pred hhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-C-CCCCCCCCCcEEEeecCCCcccC--cccCCCCCCC
Q 040332 546 FERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-I-SGIGDLKKLEFLCLRGCDIRQLP--IEVGELICLK 621 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~ 621 (1210)
|..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++.+++|++|++++|.+..+| ..++.+++|+
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 56788999999999999888 778999999999999999987 4 44667999999999999999875 7889999999
Q ss_pred EEecCCCCCCCccCh---hhhcCCCcccEEEcc
Q 040332 622 LLDLRDCSKLEVIPP---HILSNLSHLEELNIG 651 (1210)
Q Consensus 622 ~L~l~~~~~~~~~p~---~~l~~L~~L~~L~l~ 651 (1210)
+|++++| .+..+|. ..++.+++|++|+++
T Consensus 117 ~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9999998 7777776 557899999999875
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=4e-10 Score=135.40 Aligned_cols=123 Identities=26% Similarity=0.256 Sum_probs=102.9
Q ss_pred cceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCC
Q 040332 551 QVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCS 629 (1210)
Q Consensus 551 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 629 (1210)
.|++|++++|.+..+|. ++.+++|++|+|++|.+.. |..|+++++|++|++++|.++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 48999999999999997 9999999999999999998 888999999999999999999998 8999999999999998
Q ss_pred CCCcc--ChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEe
Q 040332 630 KLEVI--PPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQL 681 (1210)
Q Consensus 630 ~~~~~--p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l 681 (1210)
.+..+ |.. ++.+++|++|++++|.+.... ......+..+++|+.|++
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~----~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE----GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS----SCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc----cHHHHHHHHCcccCccCC
Confidence 77777 555 699999999999999873211 112223445788888753
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=7.9e-10 Score=110.46 Aligned_cols=101 Identities=25% Similarity=0.329 Sum_probs=88.4
Q ss_pred ceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEecCCC
Q 040332 552 VRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDLRDC 628 (1210)
Q Consensus 552 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 628 (1210)
.+.++++++.+..+|..+. .+|++|+|++|.+.. +..|.++.+|++|++++|++..+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5689999999999998774 889999999999988 55689999999999999999998875 588999999999998
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCC
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
.+..+|++.++++++|++|++++|.+
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 78888887778899999999998876
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.03 E-value=1.9e-08 Score=116.15 Aligned_cols=299 Identities=13% Similarity=0.104 Sum_probs=173.7
Q ss_pred ccccccHHHHHHHHHHhCC----CCce--EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHH
Q 040332 154 EAFESRMPTLRSILSALED----PDVN--MLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIA 227 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 227 (1210)
..++||+.+++++..++.. .... .+.|+|++|+||||+|+.+++...... --.++|+.++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5789999999999988863 3334 899999999999999999998875331 12467787777778889999999
Q ss_pred HHhCCCcccCCcccc------------cCccEEEEEeCCCCc--cchhhhcccCCCC-C---CCeEEEEeeCchhhhhhc
Q 040332 228 DKLGLKFHEESEPGR------------EEKKILVILDNIWEN--LDLRVVGIPHGDD-H---RGCKILLTARSLDVLSRK 289 (1210)
Q Consensus 228 ~~l~~~~~~~~~~~~------------~~kr~LlvlDdv~~~--~~~~~~~~~~~~~-~---~gs~iivTtR~~~v~~~~ 289 (1210)
..++........... .+++.+||+|+++.. .....+...+... . .+..||+||+.......
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~- 174 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN- 174 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT-
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH-
Confidence 988654322111100 367899999999764 3333333322211 1 36778888887644321
Q ss_pred CC-------CcceeeecCCCHHHHHHHHHHHhCC-CCCCchHHHHHHHHHHHh---------CCcchHHHHHHHH-HH--
Q 040332 290 MD-------SQQNFAVGILKEVEAWSLFKKMAGD-YIEGSEFQLVAREVEKEC---------AGLPVSIVTVARA-LR-- 349 (1210)
Q Consensus 290 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~c---------~glPlai~~~~~~-l~-- 349 (1210)
.. ....+.+++++.++..+++...+.. .....--.+..+.|++.+ +|.|-.+..+... ..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 11 1236999999999999999887632 001112245677889999 7877544433322 21
Q ss_pred ---c--CCChHHHHHHHHHhcCCCCCCccccchhHHHHHHhhhcCCCccchhhhHhhhccCc------cccHHHHHHHHh
Q 040332 350 ---N--NKSLFDWKDALEQLRRPPLKNFMNIQPNAHKAIKLSYDNLGGEELKNVFLLIGYTV------IESIDDLLMYGM 418 (1210)
Q Consensus 350 ---~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp------~~~~~~Li~~w~ 418 (1210)
. .-+.+....+........ +.-.+..|+.+ .+..+..++.+. .+....+...+.
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~~~~--------------~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVLFGI--------------SEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHSCCC--------------CHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHHhhhh--------------HHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 1 123333334444332111 11224456653 355554444321 244444444332
Q ss_pred h----cCcCCCCCcHHHHHHHHHHHHHHHHhhcceeeccc----CCCC---eEE----hhHHHHHHHHHHHc
Q 040332 419 G----LGLFQGVSKMEEARARVHTLVHKLKASCMLLDHLS----KNEE---FFS----MHDVVRDVAISIAS 475 (1210)
Q Consensus 419 a----~g~~~~~~~~e~~~~~~~~~~~~L~~~~ll~~~~~----~~~~---~~~----mHdlv~~~~~~~~~ 475 (1210)
. .|.. .. + ...+.+++++|...+++..... +..+ .++ .|+++..+...+..
T Consensus 320 ~~~~~~~~~-~~-~----~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 320 IVCEEYGER-PR-V----HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp HHHHHTTCC-CC-C----HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCC-CC-C----HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 1 2211 10 1 1335568999999999976432 1111 222 45676666555443
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.8e-09 Score=109.05 Aligned_cols=105 Identities=27% Similarity=0.360 Sum_probs=93.3
Q ss_pred CcceEEEecCcccccCCcc-ccCCCCCcEEEecCccCCC-CC-CCCCCCCCcEEEeecCCCcccCcc-cCCCCCCCEEec
Q 040332 550 IQVRVINLSYVDLLSLPSS-LVLLSNLRTLSLYYCKLLD-IS-GIGDLKKLEFLCLRGCDIRQLPIE-VGELICLKLLDL 625 (1210)
Q Consensus 550 ~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~-~~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 625 (1210)
+.|+.|++++|.+..+|.. +..+++|++|++++|.+.. ++ .++.+.+|++|++++|.++.+|.. ++.+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 5789999999999988764 6889999999999999988 44 478999999999999999988875 689999999999
Q ss_pred CCCCCCCccChhhhcCCCcccEEEccCCCC
Q 040332 626 RDCSKLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 626 ~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
++| .+..+|...+..+++|++|++++|.+
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 998 78899988778899999999999976
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.00 E-value=2.9e-09 Score=123.06 Aligned_cols=191 Identities=17% Similarity=0.173 Sum_probs=122.5
Q ss_pred cccccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCC-CCeEEEEEecCCcCHHHHHHHHH
Q 040332 153 YEAFESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKI-FDQVVFAEVSQSQDIRKIQGEIA 227 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~ 227 (1210)
+..|+||+.+++.+.+++. ....+.+.|+|++|+||||||+.+++....... -...+|+.+....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999887 445678999999999999999999998754311 12467887766667777888887
Q ss_pred HHhCCCcccCCcc--c--c--------cCccEEEEEeCCCCcc------chhhhcccCCC-CCCCeEEEEeeCchhhhhh
Q 040332 228 DKLGLKFHEESEP--G--R--------EEKKILVILDNIWENL------DLRVVGIPHGD-DHRGCKILLTARSLDVLSR 288 (1210)
Q Consensus 228 ~~l~~~~~~~~~~--~--~--------~~kr~LlvlDdv~~~~------~~~~~~~~~~~-~~~gs~iivTtR~~~v~~~ 288 (1210)
.+++......... . . .+++.+||+|+++... .+..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 7775433211110 0 0 4568999999997532 22222221111 2335677888886543211
Q ss_pred c------CCCcceeeecCCCHHHHHHHHHHHhCC-CCCCchHHHHHHHHHHHhC---CcchHHHH
Q 040332 289 K------MDSQQNFAVGILKEVEAWSLFKKMAGD-YIEGSEFQLVAREVEKECA---GLPVSIVT 343 (1210)
Q Consensus 289 ~------~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPlai~~ 343 (1210)
. .-....+.+++++.++.++++...+.. .....-..+..+.|++.++ |.|..+..
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 0 011247999999999999999886531 1011122345667777777 98874433
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=7e-10 Score=137.84 Aligned_cols=125 Identities=20% Similarity=0.176 Sum_probs=100.4
Q ss_pred EecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCCCCCcc
Q 040332 556 NLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCSKLEVI 634 (1210)
Q Consensus 556 ~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 634 (1210)
+++.+.+...|+.+..+.+|++|+|++|.+.. |..+.++.+|++|+|++|.++.+|..+++|++|++|++++| .+..+
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~l 285 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSL 285 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSC
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCcc
Confidence 33444455567889999999999999999988 77888999999999999999999999999999999999999 78899
Q ss_pred ChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCC
Q 040332 635 PPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 635 p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
|.. +++|++|++|++++|.+ +..+..|+.|++|+.|++++|.+...+
T Consensus 286 p~~-~~~l~~L~~L~L~~N~l--------~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 286 PAE-LGSCFQLKYFYFFDNMV--------TTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CSS-GGGGTTCSEEECCSSCC--------CCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred Chh-hcCCCCCCEEECCCCCC--------CccChhhhcCCCccEEeCCCCccCCCC
Confidence 987 59999999999999977 256777999999999999999887543
No 148
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.92 E-value=1e-08 Score=118.35 Aligned_cols=275 Identities=15% Similarity=0.120 Sum_probs=163.2
Q ss_pred ccccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccC---C-CCeEEEEEecCCcCHHHHHHH
Q 040332 154 EAFESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK---I-FDQVVFAEVSQSQDIRKIQGE 225 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~~~~~ 225 (1210)
..++||+.+++++..++. ....+.+.|+|++|+||||+|+.+++...... . --..+|+.+....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 678999999999999884 34567899999999999999999998764320 0 123678888888888899999
Q ss_pred HHHHhCCCcccCCccc------------ccCccEEEEEeCCCCccc----hhhh---cccCCCC--CCCeEEEEeeCchh
Q 040332 226 IADKLGLKFHEESEPG------------REEKKILVILDNIWENLD----LRVV---GIPHGDD--HRGCKILLTARSLD 284 (1210)
Q Consensus 226 i~~~l~~~~~~~~~~~------------~~~kr~LlvlDdv~~~~~----~~~~---~~~~~~~--~~gs~iivTtR~~~ 284 (1210)
++.+++.......... ..+++.+||+|+++.... .+.+ ....... ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 9998876433211100 046689999999986532 1222 1111111 34567888887653
Q ss_pred hhh----hcC--CCcceeeecCCCHHHHHHHHHHHhC---C-CCCCchHHHHHHHHHHHhC---Ccc-hHHHHHHHHHH-
Q 040332 285 VLS----RKM--DSQQNFAVGILKEVEAWSLFKKMAG---D-YIEGSEFQLVAREVEKECA---GLP-VSIVTVARALR- 349 (1210)
Q Consensus 285 v~~----~~~--~~~~~~~l~~L~~~~~~~lf~~~~~---~-~~~~~~~~~~~~~i~~~c~---glP-lai~~~~~~l~- 349 (1210)
... ... -....+.+++++.++..+++...+. . ...+ .+..+.|++.++ |.| .|+.++..+..
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 211 101 1124789999999999999988753 1 1112 234567788887 999 33333333221
Q ss_pred ----c--CCChHHHHHHHHHhcCCCCCCccccchhHHHHHHhhhcCCCccchhhhHhhhc-cCc---cccHHHHHHHH--
Q 040332 350 ----N--NKSLFDWKDALEQLRRPPLKNFMNIQPNAHKAIKLSYDNLGGEELKNVFLLIG-YTV---IESIDDLLMYG-- 417 (1210)
Q Consensus 350 ----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s-~fp---~~~~~~Li~~w-- 417 (1210)
. .-+.+.++.+++... ...+.-++..|+.+ .+..++..+ ++- .+....+.+..
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 1 124555666555431 22355567888874 343333333 221 34444333322
Q ss_pred --hhcCcCCCCCcHHHHHHHHHHHHHHHHhhcceeec
Q 040332 418 --MGLGLFQGVSKMEEARARVHTLVHKLKASCMLLDH 452 (1210)
Q Consensus 418 --~a~g~~~~~~~~e~~~~~~~~~~~~L~~~~ll~~~ 452 (1210)
-..| ... .+ ...+.++++.|...+++...
T Consensus 321 ~~~~~~-~~~-~~----~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLG-LEH-VT----LRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTT-CCC-CC----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcC-CCC-CC----HHHHHHHHHHHHhCCCeEEE
Confidence 2223 111 11 23345578888889988764
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=2.4e-11 Score=125.33 Aligned_cols=133 Identities=23% Similarity=0.234 Sum_probs=106.8
Q ss_pred hhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEE
Q 040332 545 FFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLL 623 (1210)
Q Consensus 545 ~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 623 (1210)
.|..+++|++|++++|.+..+| .+..+++|++|++++|.+.. |..+..+++|++|++++|.+..+| .++.+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 5788999999999999999998 89999999999999999988 666777899999999999999888 68899999999
Q ss_pred ecCCCCCCCccCh-hhhcCCCcccEEEccCCCCccccccc---cccCccccccCCCCCEEE
Q 040332 624 DLRDCSKLEVIPP-HILSNLSHLEELNIGDNSFYHWEVEV---DGVKNASLNELKHLTSLQ 680 (1210)
Q Consensus 624 ~l~~~~~~~~~p~-~~l~~L~~L~~L~l~~n~~~~~~~~~---~~~~~~~l~~L~~L~~L~ 680 (1210)
++++| .+..++. ..+..+++|++|++++|.+....... .......+..+++|+.|+
T Consensus 121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99998 6777664 34689999999999988762110000 001122377888999886
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.3e-08 Score=114.07 Aligned_cols=191 Identities=13% Similarity=0.038 Sum_probs=120.3
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHh
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKL 230 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 230 (1210)
.....++||+..++.+.+++..+..+.+.++|++|+||||+|+.+++...........+++..+.......+ +++++.+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHH
Confidence 345678999999999999998766555999999999999999999988643211122445554444443333 3333333
Q ss_pred CCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchhh-hhhcCCCcceeeecCCCHHHHH
Q 040332 231 GLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLDV-LSRKMDSQQNFAVGILKEVEAW 307 (1210)
Q Consensus 231 ~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~v-~~~~~~~~~~~~l~~L~~~~~~ 307 (1210)
..... ....+++.++|+||++.. ..++.+...+.....++++|+||+...- ..........+.+.+++.++..
T Consensus 97 ~~~~~----~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~ 172 (323)
T 1sxj_B 97 AQKKL----HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL 172 (323)
T ss_dssp HHBCC----CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred Hhccc----cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHH
Confidence 20000 000345889999999864 3344443333333456788888876432 1111233458999999999999
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHhCCcch-HHHHHHHH
Q 040332 308 SLFKKMAGDYIEGSEFQLVAREVEKECAGLPV-SIVTVARA 347 (1210)
Q Consensus 308 ~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~ 347 (1210)
+++...+...... --.+....|++.++|.|. |+..+...
T Consensus 173 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 173 KRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9998876421111 113456789999999995 44544443
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=2.4e-08 Score=99.95 Aligned_cols=107 Identities=25% Similarity=0.381 Sum_probs=92.8
Q ss_pred CcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccC
Q 040332 575 LRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGD 652 (1210)
Q Consensus 575 L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~ 652 (1210)
-+.++++++.+.. |..+. .+|++|++++|.+..+ |..++++++|++|++++| .+..+|...++++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 4789999999988 77675 8999999999999988 557899999999999999 89999998789999999999999
Q ss_pred CCCccccccccccCccccccCCCCCEEEeeccCCCCCCC
Q 040332 653 NSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPR 691 (1210)
Q Consensus 653 n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 691 (1210)
|.+. ...+..+..+++|+.|++++|.+...+.
T Consensus 91 N~l~-------~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLK-------SIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCC-------CCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred Cccc-------eeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9872 3334458899999999999998876554
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.78 E-value=2.6e-08 Score=99.32 Aligned_cols=107 Identities=26% Similarity=0.377 Sum_probs=93.0
Q ss_pred CCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCccc-CcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEcc
Q 040332 574 NLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQL-PIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIG 651 (1210)
Q Consensus 574 ~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~ 651 (1210)
..+.++++++.+.. |..+. .+|++|++++|.+..+ |..++++++|++|++++| .+..+|++.++.+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 46899999999998 76664 8999999999999998 557899999999999999 8889999888999999999999
Q ss_pred CCCCccccccccccCccccccCCCCCEEEeeccCCCCCC
Q 040332 652 DNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLP 690 (1210)
Q Consensus 652 ~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 690 (1210)
+|.+ .+..+..+..+++|+.|++++|.+....
T Consensus 87 ~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQL-------KSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCC-------CCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCcc-------CEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9987 2344556899999999999999877544
No 153
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.76 E-value=3.5e-08 Score=110.64 Aligned_cols=179 Identities=13% Similarity=0.071 Sum_probs=110.8
Q ss_pred CcccccccHHHHHHHHHHhC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHH
Q 040332 152 DYEAFESRMPTLRSILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEI 226 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 226 (1210)
....|+|++..++.+..++. ......+.|+|++|+|||++|+.+++.... ..+++..+......++..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH--
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH--
Confidence 45678999999888887775 234467899999999999999999987642 234454444334333332
Q ss_pred HHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCC------------------CCCCeEEEEeeCchhhh
Q 040332 227 ADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGD------------------DHRGCKILLTARSLDVL 286 (1210)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~------------------~~~gs~iivTtR~~~v~ 286 (1210)
.+... ..+..+|++|++.... ....+...+.. ...+.++|.||......
T Consensus 83 --~l~~~---------~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~ 151 (324)
T 1hqc_A 83 --ILANS---------LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI 151 (324)
T ss_dssp --HHTTT---------CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC
T ss_pred --HHHHh---------ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccC
Confidence 22110 1345689999998652 22222111100 00235677666643321
Q ss_pred -hhcCCCc-ceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 040332 287 -SRKMDSQ-QNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALR 349 (1210)
Q Consensus 287 -~~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 349 (1210)
....... ..+.+.+++.++..+++.+.+...... --.+....|++.++|.|-.+..+...+.
T Consensus 152 ~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 152 TAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp SCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred CHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 1111222 478999999999999998887432211 1235678899999999988777665553
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=3.4e-10 Score=116.71 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=105.2
Q ss_pred ceEEEecCc--ccccCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCcccCcccCCCCCCCEEecCCCC
Q 040332 552 VRVINLSYV--DLLSLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQLPIEVGELICLKLLDLRDCS 629 (1210)
Q Consensus 552 Lr~L~l~~~--~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 629 (1210)
|+...+.+. .++.+|..+..+++|++|++++|.+...+.++++++|++|++++|.+..+|..+..+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N- 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN- 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-
Confidence 444555544 45567779999999999999999999944999999999999999999999998888899999999999
Q ss_pred CCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 630 KLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 630 ~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
.+..+|. ++.+++|++|++++|.+..+. ....+..+++|+.|++++|.+.
T Consensus 104 ~l~~l~~--~~~l~~L~~L~l~~N~i~~~~------~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 104 QIASLSG--IEKLVNLRVLYMSNNKITNWG------EIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ECCCHHH--HHHHHHSSEEEESEEECCCHH------HHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCCc--cccCCCCCEEECCCCcCCchh------HHHHHhcCCCCCEEEecCCccc
Confidence 7788873 689999999999998773211 1146888999999999988654
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=7.2e-08 Score=108.30 Aligned_cols=191 Identities=12% Similarity=0.054 Sum_probs=118.1
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhC
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLG 231 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (1210)
....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.+..+.......+ ++....+.
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 101 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFA 101 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHHHHH
Confidence 45678999999999999988666666999999999999999999988642210012334443332111111 11111111
Q ss_pred CCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchhhh-hhcCCCcceeeecCCCHHHHHH
Q 040332 232 LKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLDVL-SRKMDSQQNFAVGILKEVEAWS 308 (1210)
Q Consensus 232 ~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~v~-~~~~~~~~~~~l~~L~~~~~~~ 308 (1210)
... ....+++.++|+||++.. ..++.+...+.....++++|+||....-. .........+.+.+++.++..+
T Consensus 102 ~~~-----~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~ 176 (327)
T 1iqp_A 102 RTK-----PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAK 176 (327)
T ss_dssp HSC-----CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHH
T ss_pred hhC-----CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHH
Confidence 000 000356789999999864 34444443333334577888888764321 1111123478999999999999
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 040332 309 LFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARALR 349 (1210)
Q Consensus 309 lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 349 (1210)
++...+..... .--.+....|++.++|.|-.+..+.....
T Consensus 177 ~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 177 RLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp HHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99887643221 11235667899999999987665555444
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=3.3e-08 Score=110.97 Aligned_cols=285 Identities=15% Similarity=0.076 Sum_probs=161.0
Q ss_pred CCcceEEEecCcccccCCccccC-CCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCc-ccCC--------C
Q 040332 549 MIQVRVINLSYVDLLSLPSSLVL-LSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPI-EVGE--------L 617 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~lp~~i~~-l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~--------l 617 (1210)
+..++.|.++++--..-...+.. +.+|++|+|++|.+.. ...-+.+..+..+.+..+ .+|. .+.+ +
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence 45677777776421100112222 7889999999998873 111122222455555444 3443 4456 8
Q ss_pred CCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeecc----CCCCCCCcc
Q 040332 618 ICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIK----DINCLPRGL 693 (1210)
Q Consensus 618 ~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~----~~~~~~~~~ 693 (1210)
++|+.+++.+ .+..++...|..+++|+.+++..|.+. ......|.++.++..+....+ ....+...
T Consensus 101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~-------~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~- 170 (329)
T 3sb4_A 101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAP-------NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF- 170 (329)
T ss_dssp TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCC-------EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS-
T ss_pred CCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCcc-------ccchhhhcCCCceEEecCcchhhhhcccccccc-
Confidence 8899999887 678888888888999999999877652 233445555554444433321 11111111
Q ss_pred ccccCceeEEEEcccccccCcCCcceEEecCCcccchHHHHHHH---hccccEEeecccccccchhhhhhhhhcccccCc
Q 040332 694 FFEKLERYRILIGDFWNWKYNICSRDFRIGLSKRICLKDVLIVQ---LQGIEHLGLYGLQEHDVESFANELVKVGSSQLK 770 (1210)
Q Consensus 694 ~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~ 770 (1210)
.+.+...+.. .+.......++..+... ..++..+.+.+. ...... ..+. ..+++|+
T Consensus 171 ~f~~~~~L~~-----------------~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~-~~l~-~~~~~L~ 229 (329)
T 3sb4_A 171 AFIEGEPLET-----------------TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADF-KLIR-DYMPNLV 229 (329)
T ss_dssp CEEESCCCEE-----------------EEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHH-HHHH-HHCTTCC
T ss_pred ccccccccce-----------------eEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHH-HHHH-HhcCCCe
Confidence 1111111110 11111222233333322 345666666553 111111 1111 1367888
Q ss_pred EEEeeCCcccccccCCcccccchhhHHHHhhccccchhhhcccccccccCCcceEEeecCCCccccccchhhhhccccc-
Q 040332 771 HLWIEGCHEAHDALNSAESKRQEESTNDMRSNEIILEDRINISNILFNEKNLTRLTVCNCRNLGCLFSSSIVSSFVRLQ- 849 (1210)
Q Consensus 771 ~L~l~~~~~~~~~~~~~~~~~~L~~L~~~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~- 849 (1210)
+|++.++. +..++ .+.|..+++|+.|.+.+. ++.++.. .+.++++|+
T Consensus 230 ~l~L~~n~-i~~I~----------------------------~~aF~~~~~L~~l~l~~n--i~~I~~~-aF~~~~~L~~ 277 (329)
T 3sb4_A 230 SLDISKTN-ATTIP----------------------------DFTFAQKKYLLKIKLPHN--LKTIGQR-VFSNCGRLAG 277 (329)
T ss_dssp EEECTTBC-CCEEC----------------------------TTTTTTCTTCCEEECCTT--CCEECTT-TTTTCTTCCE
T ss_pred EEECCCCC-cceec----------------------------HhhhhCCCCCCEEECCcc--cceehHH-HhhCChhccE
Confidence 88888753 22222 244556678888888763 6666553 357888999
Q ss_pred EEEEeccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceee
Q 040332 850 HLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELR 912 (1210)
Q Consensus 850 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~ 912 (1210)
.+.+.+ .++.+. +..+..+++|+.+++.. ++++.++... +..+++|+.+.
T Consensus 278 ~l~l~~--~l~~I~--------~~aF~~c~~L~~l~l~~-n~i~~I~~~a--F~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA--SVTAIE--------FGAFMGCDNLRYVLATG-DKITTLGDEL--FGNGVPSKLIY 327 (329)
T ss_dssp EEEECT--TCCEEC--------TTTTTTCTTEEEEEECS-SCCCEECTTT--TCTTCCCCEEE
T ss_pred EEEEcc--cceEEc--------hhhhhCCccCCEEEeCC-CccCccchhh--hcCCcchhhhc
Confidence 999987 577773 45677789999999876 5777777654 56677777765
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=7.3e-08 Score=109.18 Aligned_cols=99 Identities=23% Similarity=0.157 Sum_probs=82.5
Q ss_pred EEEecCc-ccccCCccccCCCCCcEEEecC-ccCCC-C-CCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecCCC
Q 040332 554 VINLSYV-DLLSLPSSLVLLSNLRTLSLYY-CKLLD-I-SGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLRDC 628 (1210)
Q Consensus 554 ~L~l~~~-~~~~lp~~i~~l~~L~~L~L~~-~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 628 (1210)
.++++++ .+..+|. +..+.+|++|+|++ |.+.. + ..|++|.+|++|+|++|.+..+|+ .|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3588887 8889998 99999999999986 88887 4 568899999999999999988765 5788999999999998
Q ss_pred CCCCccChhhhcCCCcccEEEccCCCC
Q 040332 629 SKLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 629 ~~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
.+..+|+..+..+. |++|++.+|.+
T Consensus 91 -~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 -ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp -CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred -ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 78888887666555 88888888876
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=3.2e-06 Score=96.65 Aligned_cols=107 Identities=19% Similarity=0.138 Sum_probs=62.4
Q ss_pred cccchhhhcCCcceEEEecCcccccCCc-cccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCcccCC
Q 040332 540 SIANNFFERMIQVRVINLSYVDLLSLPS-SLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPIEVGE 616 (1210)
Q Consensus 540 ~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~ 616 (1210)
.++...|.++ .|+.+.+..+ +..++. +|.+ .+|+.+.+.. .+.. ...|.++.+|+.+++.+|.+..+|...-.
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~ 201 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT
T ss_pred EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe
Confidence 3445556654 5666666654 454433 3334 3566666664 3333 44566666777777766666666654434
Q ss_pred CCCCCEEecCCCCCCCccChhhhcCCCcccEEEccC
Q 040332 617 LICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGD 652 (1210)
Q Consensus 617 l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~ 652 (1210)
..+|+.+.+.. .+..++...+.++.+|+.+.+..
T Consensus 202 ~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 202 YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT
T ss_pred ecccCEEEeCC--chheehhhHhhCCCCCCEEecCC
Confidence 56666666654 35666666666666666666653
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.51 E-value=7e-07 Score=99.74 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=117.3
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEecCCcC---HHHHHHHHH
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD-QVVFAEVSQSQD---IRKIQGEIA 227 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~---~~~~~~~i~ 227 (1210)
....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++..... .+. ..+.+..+.... .........
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKIKEFA 93 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTT-CHHHHCEEEETTSTTCTTTSSHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCC-cccCCeEEEeCccccChHHHHHHHHHHH
Confidence 456689999999999999887666569999999999999999999885321 111 123344443322 222222222
Q ss_pred HHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh-hhhhcCCCcceeeecCCCHH
Q 040332 228 DKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLD-VLSRKMDSQQNFAVGILKEV 304 (1210)
Q Consensus 228 ~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~ 304 (1210)
... . ...+++-++|+|+++.. ...+.+...+.....+.++|+||.... +..........+.+.+++.+
T Consensus 94 ~~~--~-------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~ 164 (319)
T 2chq_A 94 RTA--P-------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKE 164 (319)
T ss_dssp HSC--C-------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHH
T ss_pred hcC--C-------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHH
Confidence 110 0 00356789999999764 334555544444445778888876643 21111223458999999999
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHHHH
Q 040332 305 EAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVARAL 348 (1210)
Q Consensus 305 ~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 348 (1210)
+..+++...+...... --.+....|++.++|.+-.+......+
T Consensus 165 ~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~ 207 (319)
T 2chq_A 165 AMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGA 207 (319)
T ss_dssp HHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999998877432211 123456788888999887655444333
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=1.8e-07 Score=104.83 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=104.4
Q ss_pred CCchhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcccccCC-ccccCCCCCcEEEecCccC----CCC--CCC---
Q 040332 522 CPQLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKL----LDI--SGI--- 591 (1210)
Q Consensus 522 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~----~~~--~~i--- 591 (1210)
|++|+.|.+.. ....++...|.++..|+.++++++.+..++ ..|..+.++.++.+..... ... ..|
T Consensus 100 ~~~L~~l~L~~----~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE----KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT----TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc----cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 66777663322 233566667777777777777777766553 3455555555554443110 000 000
Q ss_pred -----------------------------------------------CCCCCCcEEEeecCCCcccCc-ccCCCCCCCEE
Q 040332 592 -----------------------------------------------GDLKKLEFLCLRGCDIRQLPI-EVGELICLKLL 623 (1210)
Q Consensus 592 -----------------------------------------------~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L 623 (1210)
..+.+|+.|++++|.++.+|. .+..+++|+.+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 026788888888888888876 57888888888
Q ss_pred ecCCCCCCCccChhhhcCCCccc-EEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCCCCCcc
Q 040332 624 DLRDCSKLEVIPPHILSNLSHLE-ELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINCLPRGL 693 (1210)
Q Consensus 624 ~l~~~~~~~~~p~~~l~~L~~L~-~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 693 (1210)
++.++ +..++...|.++.+|+ .+.+.. .+ .......|.++++|+.+++..+.+..++...
T Consensus 256 ~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l-------~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a 316 (329)
T 3sb4_A 256 KLPHN--LKTIGQRVFSNCGRLAGTLELPA-SV-------TAIEFGAFMGCDNLRYVLATGDKITTLGDEL 316 (329)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEEEECT-TC-------CEECTTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred ECCcc--cceehHHHhhCChhccEEEEEcc-cc-------eEEchhhhhCCccCCEEEeCCCccCccchhh
Confidence 88875 7788888888888888 888875 32 2344577888888888888888888777653
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.44 E-value=1.5e-06 Score=99.34 Aligned_cols=186 Identities=9% Similarity=0.113 Sum_probs=114.1
Q ss_pred CcccccccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhccCCC-------------------CeEEEE
Q 040332 152 DYEAFESRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSDKIF-------------------DQVVFA 211 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~wv 211 (1210)
....++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+ ...+.+
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence 34568999999999999887543 4578999999999999999999876432111 012333
Q ss_pred EecCCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh-hhhh
Q 040332 212 EVSQSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLD-VLSR 288 (1210)
Q Consensus 212 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~-v~~~ 288 (1210)
..+..... +..+++.+.+.... ..+++.++|+||++.. ..++.+...+.....+..+|++|.... +...
T Consensus 94 ~~~~~~~~-~~~~~l~~~~~~~~-------~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 94 DAASRTKV-EDTRDLLDNVQYAP-------ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp ETTCSCCS-SCHHHHHHHTTSCC-------SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred cccccCCH-HHHHHHHHHHhhcc-------ccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence 32221111 11223333332111 1456789999999754 334444333333334667777776433 2222
Q ss_pred cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHH
Q 040332 289 KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVAR 346 (1210)
Q Consensus 289 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 346 (1210)
.......+.+.+++.++..+++.+.+...... --.+....|++.++|.|..+..+..
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 12334689999999999999998776321111 1134567899999999987766543
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.42 E-value=3e-07 Score=94.18 Aligned_cols=147 Identities=13% Similarity=0.148 Sum_probs=88.3
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC-----CCCeEEEEEecCC----cCH---
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK-----IFDQVVFAEVSQS----QDI--- 219 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~wv~vs~~----~~~--- 219 (1210)
....++||+++++++.+++.....+.+.|+|.+|+|||++|+.+++...... .....+++.++.. ...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 99 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHH
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccH
Confidence 4567899999999999999877677889999999999999999998864311 1123455543221 111
Q ss_pred HHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc---------c-hhhhcccCCCCCCCeEEEEeeCchhhh---
Q 040332 220 RKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL---------D-LRVVGIPHGDDHRGCKILLTARSLDVL--- 286 (1210)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~---------~-~~~~~~~~~~~~~gs~iivTtR~~~v~--- 286 (1210)
...+..++..+. ..+++.+||+||++... . ...+...+ .. .+..+|.||......
T Consensus 100 ~~~~~~~~~~~~----------~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~-~~~~~i~~~~~~~~~~~~ 167 (195)
T 1jbk_A 100 EERLKGVLNDLA----------KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-AR-GELHCVGATTLDEYRQYI 167 (195)
T ss_dssp HHHHHHHHHHHH----------HSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-HT-TSCCEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHh----------hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-cc-CCeEEEEeCCHHHHHHHH
Confidence 122223333221 13567899999997541 1 11221111 11 244577777654421
Q ss_pred ---hhcCCCcceeeecCCCHHHHHHHH
Q 040332 287 ---SRKMDSQQNFAVGILKEVEAWSLF 310 (1210)
Q Consensus 287 ---~~~~~~~~~~~l~~L~~~~~~~lf 310 (1210)
.........+.+.+++.++..+++
T Consensus 168 ~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 168 EKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred hcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111122336889999988876543
No 163
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.39 E-value=4.3e-06 Score=90.71 Aligned_cols=159 Identities=9% Similarity=0.089 Sum_probs=100.7
Q ss_pred cccccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCC---CC--eEEEEEecCCcCHHHHHHH
Q 040332 155 AFESRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKI---FD--QVVFAEVSQSQDIRKIQGE 225 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~---F~--~~~wv~vs~~~~~~~~~~~ 225 (1210)
.+.||+++++++...|. .+..+.+-|+|++|+|||++|+.|+++...... .. ..++|......+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999987775 567789999999999999999999998753221 11 2456666677788889999
Q ss_pred HHHHhCCCcccCCcc------------cccCccEEEEEeCCCCccchhhhcccC----CCCCCCeEEEEeeCchhhh---
Q 040332 226 IADKLGLKFHEESEP------------GREEKKILVILDNIWENLDLRVVGIPH----GDDHRGCKILLTARSLDVL--- 286 (1210)
Q Consensus 226 i~~~l~~~~~~~~~~------------~~~~kr~LlvlDdv~~~~~~~~~~~~~----~~~~~gs~iivTtR~~~v~--- 286 (1210)
|++++.......... ...+++++++||+++....-+.+...+ ...++ .-||.++...+..
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~-~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSK-LSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCC-EEEEEECCSSCCCHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCc-EEEEEEecCcccchhh
Confidence 999985432111110 014667999999998753222221111 11122 2334444332211
Q ss_pred --h---hcCCCcceeeecCCCHHHHHHHHHHHhC
Q 040332 287 --S---RKMDSQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 287 --~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
. ..++ ...+.+++++.+|-.+++.+++.
T Consensus 180 L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 0121 24689999999999999988773
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.32 E-value=1.6e-06 Score=98.10 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=85.7
Q ss_pred cEEEecCc-cCCC-CCCCCCCCCCcEEEeec-CCCcccCc-ccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEcc
Q 040332 576 RTLSLYYC-KLLD-ISGIGDLKKLEFLCLRG-CDIRQLPI-EVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIG 651 (1210)
Q Consensus 576 ~~L~L~~~-~~~~-~~~i~~L~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~ 651 (1210)
..++++++ .+.. |. |..+.+|++|+|++ |.+..+|. .++.|++|++|++++| .+..+++..|++|++|++|+++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 8888 77 99999999999996 99999984 6899999999999998 7888988878999999999999
Q ss_pred CCCCccccccccccCccccccCCCCCEEEeeccCCCC
Q 040332 652 DNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC 688 (1210)
Q Consensus 652 ~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 688 (1210)
+|.+. +..+..+..+. |+.|++.+|.+..
T Consensus 89 ~N~l~-------~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALE-------SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCS-------CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccc-------eeCHHHcccCC-ceEEEeeCCCccC
Confidence 99873 23333444555 9999999888764
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=2.9e-06 Score=96.23 Aligned_cols=193 Identities=12% Similarity=0.104 Sum_probs=112.5
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEecCCcCHHHHHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD-QVVFAEVSQSQDIRKIQGEIADK 229 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~ 229 (1210)
.....++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++.......+. ..+.+..+.......+...+...
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHH
Confidence 34567899999999999999876555589999999999999999998753211111 23334444333333332222111
Q ss_pred hCCCcccCCc----ccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh-hhhhcCCCcceeeecCCC
Q 040332 230 LGLKFHEESE----PGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLD-VLSRKMDSQQNFAVGILK 302 (1210)
Q Consensus 230 l~~~~~~~~~----~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~ 302 (1210)
.......... ....+++-++++|++... .....+...+.......++|++|.... +..........+.+.+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~ 193 (353)
T 1sxj_D 114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALD 193 (353)
T ss_dssp HHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCC
T ss_pred hhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCC
Confidence 1110000000 000245579999998754 223333333322234567777775432 211111223478999999
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 303 EVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 303 ~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
.++..+.+...+...... --.+..+.|++.++|.|-.+..+
T Consensus 194 ~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 194 ASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999998876422111 11356788999999998765443
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.18 E-value=8.6e-06 Score=93.91 Aligned_cols=179 Identities=14% Similarity=0.180 Sum_probs=107.5
Q ss_pred cCcccccccHHHH---HHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-cCHHHHHHHH
Q 040332 151 KDYEAFESRMPTL---RSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-QDIRKIQGEI 226 (1210)
Q Consensus 151 ~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i 226 (1210)
.....++|.+..+ ..+...+..+..+.+.++|.+|+||||+|+.+++..... ++.++.. .....+ +++
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI-REA 94 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH-HHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH-HHH
Confidence 4567789999888 677777777777889999999999999999999886432 2333322 233332 222
Q ss_pred HHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE-EeeCchh--hhhhcCCCcceeeecCC
Q 040332 227 ADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKIL-LTARSLD--VLSRKMDSQQNFAVGIL 301 (1210)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTtR~~~--v~~~~~~~~~~~~l~~L 301 (1210)
........ ..+++.+|++|++... ...+.+...+.. + ...+| .||.+.. +..........+.++++
T Consensus 95 ~~~a~~~~-------~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l 165 (447)
T 3pvs_A 95 IERARQNR-------NAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSL 165 (447)
T ss_dssp HHHHHHHH-------HTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCC
T ss_pred HHHHHHhh-------hcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCc
Confidence 22211000 0356789999999865 233333333322 1 23344 3555543 21122333458899999
Q ss_pred CHHHHHHHHHHHhCCC------CCCchHHHHHHHHHHHhCCcchHHHHHHH
Q 040332 302 KEVEAWSLFKKMAGDY------IEGSEFQLVAREVEKECAGLPVSIVTVAR 346 (1210)
Q Consensus 302 ~~~~~~~lf~~~~~~~------~~~~~~~~~~~~i~~~c~glPlai~~~~~ 346 (1210)
+.++..+++.+.+... ....--.+..+.|++.++|.+-.+..+-.
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999998876421 11112245667888889888765554433
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.15 E-value=1.7e-07 Score=106.26 Aligned_cols=136 Identities=19% Similarity=0.127 Sum_probs=94.3
Q ss_pred CCcceEEEecCccccc--CCccccCCCCCcEEEecCccCCC--CCCC-----CCCCCCcEEEeecCCCcc-----cCccc
Q 040332 549 MIQVRVINLSYVDLLS--LPSSLVLLSNLRTLSLYYCKLLD--ISGI-----GDLKKLEFLCLRGCDIRQ-----LPIEV 614 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~--~~~i-----~~L~~L~~L~l~~~~l~~-----lp~~i 614 (1210)
...|+.|+|++|.+.. +..-...+.+|++|+|++|.+.. ...+ ....+|++|++++|.+.. ++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 4688999999998763 22222345688999999998876 3333 356789999999998863 55666
Q ss_pred CCCCCCCEEecCCCCCCCccC----hhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCCC
Q 040332 615 GELICLKLLDLRDCSKLEVIP----PHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDINC 688 (1210)
Q Consensus 615 ~~l~~L~~L~l~~~~~~~~~p----~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 688 (1210)
..+++|++|++++| .++... ...+...++|++|++++|.+.... .......+...++|+.|++++|.+..
T Consensus 180 ~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g---~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA---ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH---HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH---HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 78888999999998 555422 122467788999999988763211 01233455667889999999887764
No 168
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=1.5e-06 Score=84.82 Aligned_cols=89 Identities=13% Similarity=0.231 Sum_probs=53.1
Q ss_pred cccEEEEeccccccc-cCCCCccccCccEEEEccCCCcceecchhHHh---hhhhceEEeEcccccHHHHHhhccccccc
Q 040332 1042 NLVILHVIRCNNLIN-LVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAK---SLVRLKEMRVSECNMITEIVLAVVDDAVD 1117 (1210)
Q Consensus 1042 ~L~~L~l~~c~~L~~-l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~---~l~sL~~L~i~~c~~l~~l~~~~~~~~~~ 1117 (1210)
.|+.|++++|. +++ -...+..+++|++|++++|.++++-.-..+.+ ..++|++|+|++|++++.-...
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~------- 133 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII------- 133 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-------
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-------
Confidence 67888888887 443 12234567778888888887776542222111 1246777777777766554321
Q ss_pred ccccccccccccccccccccc
Q 040332 1118 EIIVFSELKDLELCELKSMTS 1138 (1210)
Q Consensus 1118 ~~~~~~~L~~L~l~~c~~L~~ 1138 (1210)
.+..+++|++|+|++|+++++
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 234566666666666666665
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.13 E-value=1.6e-05 Score=91.48 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=80.2
Q ss_pred ccccccccccCcCcccEEEEeccccccccCCCCccccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHH
Q 040332 1029 LKHILKQESSNMNNLVILHVIRCNNLINLVPSSLSFQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIV 1108 (1210)
Q Consensus 1029 L~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~ 1108 (1210)
...+....+..+..|+.+...... +.. .....+++|+.+.+.. +++.+ ....+.++++|+.++|.+ .++.+.
T Consensus 264 ~~~i~~~~F~~~~~l~~~~~~~~~-i~~--~~F~~~~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~ 335 (394)
T 4fs7_A 264 KLRIGGSLFYNCSGLKKVIYGSVI-VPE--KTFYGCSSLTEVKLLD--SVKFI-GEEAFESCTSLVSIDLPY--LVEEIG 335 (394)
T ss_dssp TCEECSCTTTTCTTCCEEEECSSE-ECT--TTTTTCTTCCEEEECT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEEC
T ss_pred cceeeccccccccccceeccCcee-ecc--cccccccccccccccc--cccee-chhhhcCCCCCCEEEeCC--cccEEh
Confidence 344444445556666666554321 111 1234677888888764 47776 445567788888888853 244443
Q ss_pred hhcccccccccccccccccccccccccccccccCCccccCCcccEEeeccCCCccccCCCCcCCCceeEE
Q 040332 1109 LAVVDDAVDEIIVFSELKDLELCELKSMTSFCSGHCAFKFPSLERILVNDCPSMKIFSGGELSTPKLLKV 1178 (1210)
Q Consensus 1109 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~~~L~~l 1178 (1210)
. .+...+++|+.+.+.. .++.+....+. .|++|+++++.. +++.+.....+|++|+.+
T Consensus 336 ~-------~aF~~c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 336 K-------RSFRGCTSLSNINFPL--SLRKIGANAFQ-GCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp T-------TTTTTCTTCCEECCCT--TCCEECTTTBT-TCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred H-------HhccCCCCCCEEEECc--cccEehHHHhh-CCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 1 2466778888888753 47777665544 678888888864 455555556778888765
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.13 E-value=3.4e-06 Score=89.77 Aligned_cols=176 Identities=11% Similarity=0.071 Sum_probs=103.4
Q ss_pred Cccccccc---HHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHH
Q 040332 152 DYEAFESR---MPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIAD 228 (1210)
Q Consensus 152 ~~~~~~gr---~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 228 (1210)
....|+|+ +..++.+..+...+..+.+.|+|++|+||||+|+.+++..... ...++|+.++..... +.+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HHH
Confidence 45566653 3566666666655567889999999999999999999987643 344667766442110 000
Q ss_pred HhCCCcccCCcccccCccEEEEEeCCCCcc--c--hhhhcccCCC--CCCCeEEEEeeCchhhh-----hh---cCCCcc
Q 040332 229 KLGLKFHEESEPGREEKKILVILDNIWENL--D--LRVVGIPHGD--DHRGCKILLTARSLDVL-----SR---KMDSQQ 294 (1210)
Q Consensus 229 ~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~--~~~~~~~~~~--~~~gs~iivTtR~~~v~-----~~---~~~~~~ 294 (1210)
.+ ..-.+.-+||+||++... . .+.+...+.. .....++|+||+...-. .. ......
T Consensus 98 ~~----------~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~ 167 (242)
T 3bos_A 98 LL----------EGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGL 167 (242)
T ss_dssp GG----------TTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSE
T ss_pred HH----------HhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCc
Confidence 00 012345689999987542 1 2222211110 01122577777643210 00 011125
Q ss_pred eeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHH
Q 040332 295 NFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVAR 346 (1210)
Q Consensus 295 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 346 (1210)
.+.+++++.++..+++...+..... .--.+....|++.++|.+-.+..+..
T Consensus 168 ~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 168 TYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp EEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 7899999999999999887642111 11235667888999998766655443
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.12 E-value=2e-05 Score=85.99 Aligned_cols=176 Identities=18% Similarity=0.169 Sum_probs=103.5
Q ss_pred ccCcccccccHHHHHHHHHHhCC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 150 SKDYEAFESRMPTLRSILSALED-------------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
......++|.+..++++...+.. ...+.+.|+|++|+|||++|+.+++..... .+.+..+.-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~ 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSEL 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHH
Confidence 34567789999999998877641 345679999999999999999999876422 233333221
Q ss_pred c-----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc------------c----chhhhcccCC--CCCCC
Q 040332 217 Q-----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN------------L----DLRVVGIPHG--DDHRG 273 (1210)
Q Consensus 217 ~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~------------~----~~~~~~~~~~--~~~~g 273 (1210)
. ........+..... ..+..+|++||++.. . .+..+...+. ....+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAK-----------EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHH-----------HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred HHhccchHHHHHHHHHHHHH-----------HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 1 11222333333221 344579999999643 0 1111111111 22346
Q ss_pred eEEEEeeCchhhhhh-cC---CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCc-chHHHH
Q 040332 274 CKILLTARSLDVLSR-KM---DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGL-PVSIVT 343 (1210)
Q Consensus 274 s~iivTtR~~~v~~~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~ 343 (1210)
..||.||........ .. --...+.++..+.++..+++...+........ .....|++...|. |-.+..
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHH
Confidence 778888876433211 01 11237899999999999999988763322111 1135677777764 434443
No 172
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.09 E-value=7.3e-05 Score=80.41 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=99.1
Q ss_pred CcccccccHHHHHHHHHHhC---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-
Q 040332 152 DYEAFESRMPTLRSILSALE---D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD- 218 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~- 218 (1210)
....++|.+..++.+.+++. . ...+.+.|+|++|+|||++|+.+++..... .+.+..+.-..
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh
Confidence 35567888888777755442 1 234568899999999999999999976422 23344332211
Q ss_pred ----HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc-----------------chhhhcccCCC--CCCCeE
Q 040332 219 ----IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL-----------------DLRVVGIPHGD--DHRGCK 275 (1210)
Q Consensus 219 ----~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~-----------------~~~~~~~~~~~--~~~gs~ 275 (1210)
....+..+..... .....+|++|+++... .+..+...+.. ...+..
T Consensus 79 ~~~~~~~~~~~~~~~a~-----------~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 147 (262)
T 2qz4_A 79 IGGLGAARVRSLFKEAR-----------ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVI 147 (262)
T ss_dssp STTHHHHHHHHHHHHHH-----------HTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEE
T ss_pred ccChhHHHHHHHHHHHH-----------hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEE
Confidence 1122222222221 2346799999997530 11122111111 223566
Q ss_pred EEEeeCchhhhhh-cCC--C-cceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch-HHHHH
Q 040332 276 ILLTARSLDVLSR-KMD--S-QQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV-SIVTV 344 (1210)
Q Consensus 276 iivTtR~~~v~~~-~~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 344 (1210)
||.||........ ... . ...+.++..+.++-.+++...+...............+++.+.|.+- .|..+
T Consensus 148 vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 148 VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 7777765442211 111 1 24678999999999999988764322222223334678888888754 44433
No 173
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=1.3e-05 Score=95.10 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=109.9
Q ss_pred ccCcccccccHHHHHHHHHHhCC-----------------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE
Q 040332 150 SKDYEAFESRMPTLRSILSALED-----------------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAE 212 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 212 (1210)
+.....++|++..++++..++.. +..+.+.|+|++|+||||+|+.+++... + .++.+.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 34567799999999999999864 1347899999999999999999998873 2 234455
Q ss_pred ecCCcCHHHHHHHHHHHhCCCcc--cCCc-----ccccCccEEEEEeCCCCccc-----hhhhcccCCCCCCCeEEEEee
Q 040332 213 VSQSQDIRKIQGEIADKLGLKFH--EESE-----PGREEKKILVILDNIWENLD-----LRVVGIPHGDDHRGCKILLTA 280 (1210)
Q Consensus 213 vs~~~~~~~~~~~i~~~l~~~~~--~~~~-----~~~~~kr~LlvlDdv~~~~~-----~~~~~~~~~~~~~gs~iivTt 280 (1210)
.+...... +....+........ ..-. ....+++.+||+|+++.... +..+...+.. .+..||+++
T Consensus 110 ~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~ 186 (516)
T 1sxj_A 110 ASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILIC 186 (516)
T ss_dssp TTSCCCHH-HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEE
T ss_pred CCCcchHH-HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEE
Confidence 55444433 22222221111000 0000 01146788999999975421 2222221111 233466655
Q ss_pred Cchh---hhhhcCCCcceeeecCCCHHHHHHHHHHHhCC--CCCCchHHHHHHHHHHHhCC-cchHHHHHHHH
Q 040332 281 RSLD---VLSRKMDSQQNFAVGILKEVEAWSLFKKMAGD--YIEGSEFQLVAREVEKECAG-LPVSIVTVARA 347 (1210)
Q Consensus 281 R~~~---v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~~ 347 (1210)
.... +.. .......+.+++++.++..+.+.+.+.. ...++ +....|++.++| ++-|+..+..+
T Consensus 187 ~~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 187 NERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp SCTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTHH
T ss_pred cCCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5422 211 1233457899999999999998877641 11122 245688899988 55566655443
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.08 E-value=6.5e-07 Score=101.43 Aligned_cols=134 Identities=15% Similarity=0.132 Sum_probs=93.9
Q ss_pred CCcceEEEecCccccc-----CCcccc-CCCCCcEEEecCccCCC--CCCC-CCCCCCcEEEeecCCCccc-----Cccc
Q 040332 549 MIQVRVINLSYVDLLS-----LPSSLV-LLSNLRTLSLYYCKLLD--ISGI-GDLKKLEFLCLRGCDIRQL-----PIEV 614 (1210)
Q Consensus 549 l~~Lr~L~l~~~~~~~-----lp~~i~-~l~~L~~L~L~~~~~~~--~~~i-~~L~~L~~L~l~~~~l~~l-----p~~i 614 (1210)
++.|+.|++++|.+.. +...+. ...+|++|+|++|.+.. ...+ ..+.+|++|++++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5679999999999874 223333 33799999999999876 3333 3467899999999988633 2223
Q ss_pred -CCCCCCCEEecCCCCCCCc-----cChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 615 -GELICLKLLDLRDCSKLEV-----IPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 615 -~~l~~L~~L~l~~~~~~~~-----~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
...++|++|++++| .++. ++.. +...++|++|++++|.+.... .......+...++|+.|++++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g---~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEG---LELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHH---HHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHH---HHHHHHHHhcCCCcCeEECCCCCCC
Confidence 35688999999998 5654 3322 477889999999998763211 0122455667788899998887665
No 175
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=1.4e-06 Score=85.01 Aligned_cols=91 Identities=14% Similarity=0.238 Sum_probs=66.5
Q ss_pred ccCccEEEEccCCCcceecchhHHhhhhhceEEeEcccccHHHHHhhccccccccccc----cccccccccccccccccc
Q 040332 1064 FQNLTTLKVSYCKGLMKVLTSSIAKSLVRLKEMRVSECNMITEIVLAVVDDAVDEIIV----FSELKDLELCELKSMTSF 1139 (1210)
Q Consensus 1064 l~~L~~L~i~~c~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~----~~~L~~L~l~~c~~L~~l 1139 (1210)
-..|++|++++|. ++...- ..+..+++|++|++++|..++.-... .+.. .++|++|+|++|+++++-
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~-------~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLE-------RLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHH-------HHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHH-------HHHhcccccCCCCEEEcCCCCcCCHH
Confidence 3479999999996 766532 23568899999999999877654321 1222 457999999999999885
Q ss_pred ccCCccccCCcccEEeeccCCCccc
Q 040332 1140 CSGHCAFKFPSLERILVNDCPSMKI 1164 (1210)
Q Consensus 1140 ~~~~~~~~~~sL~~L~i~~C~~l~~ 1164 (1210)
...... .+++|++|++++|++++.
T Consensus 131 Gl~~L~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALH-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGG-GCTTCCEEEEESCTTCCC
T ss_pred HHHHHh-cCCCCCEEECCCCCCCCc
Confidence 433222 568999999999998864
No 176
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.07 E-value=9.5e-06 Score=92.77 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=63.1
Q ss_pred cccchhhhcCCcceEEEecCcccccCC-ccccCCCCCcEEEecCccCCC-CCCCCCCCCCcEEEeecCCCcccCc-ccCC
Q 040332 540 SIANNFFERMIQVRVINLSYVDLLSLP-SSLVLLSNLRTLSLYYCKLLD-ISGIGDLKKLEFLCLRGCDIRQLPI-EVGE 616 (1210)
Q Consensus 540 ~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~ 616 (1210)
.+....|.++ .|+.+.+.. .+..++ .+|.+|.+|+.+++.+|.+.. +.......+|+.+.+..+ +..++. .+.+
T Consensus 148 ~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~ 224 (401)
T 4fdw_A 148 SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLK 224 (401)
T ss_dssp EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTT
T ss_pred EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhC
Confidence 3444445553 355555554 344432 345555556666655555554 322222355555555532 444433 3455
Q ss_pred CCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccC
Q 040332 617 LICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKD 685 (1210)
Q Consensus 617 l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 685 (1210)
+++|+.+.+..+ +..++...+.+ .+|+.+.+..+ + .......|.++++|+.+.+..+.
T Consensus 225 ~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i-------~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 225 TSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-V-------TNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp CTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-C-------CEECTTTTTTCTTCCEEEEESSC
T ss_pred CCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-c-------cEEChhHhhCCCCCCEEEeCCcc
Confidence 555555555542 44555544444 45555555321 1 12233445555555555555443
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.06 E-value=6.5e-05 Score=81.17 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=101.9
Q ss_pred ccccccHHHHHHHHH-------HhC---CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC-c--CHH
Q 040332 154 EAFESRMPTLRSILS-------ALE---DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-Q--DIR 220 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~-------~l~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~--~~~ 220 (1210)
..++|+...+++++. .+. ....+.+.|+|++|+|||++|+.+++... +.. +.+..+.. . ...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----~~~-~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN----FPF-IKICSPDKMIGFSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----CSE-EEEECGGGCTTCCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----CCE-EEEeCHHHhcCCchH
Confidence 356677766665555 332 44567899999999999999999999754 222 22222211 1 111
Q ss_pred ---HHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc-----------c-chhhhcccCC---CCCCCeEEEEeeCc
Q 040332 221 ---KIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN-----------L-DLRVVGIPHG---DDHRGCKILLTARS 282 (1210)
Q Consensus 221 ---~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~-----------~-~~~~~~~~~~---~~~~gs~iivTtR~ 282 (1210)
..++.+.+... ..+.-+|++||++.. . ..+.+...+. .......||.||..
T Consensus 108 ~~~~~~~~~~~~~~-----------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 108 AKCQAMKKIFDDAY-----------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR 176 (272)
T ss_dssp HHHHHHHHHHHHHH-----------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred HHHHHHHHHHHHHH-----------hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence 11222222211 345789999998642 1 1122222221 12334557778877
Q ss_pred hhhhhh--cCCC-cceeeecCCCH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCC------cchHHHHHHHHHHcCC
Q 040332 283 LDVLSR--KMDS-QQNFAVGILKE-VEAWSLFKKMAGDYIEGSEFQLVAREVEKECAG------LPVSIVTVARALRNNK 352 (1210)
Q Consensus 283 ~~v~~~--~~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g------lPlai~~~~~~l~~~~ 352 (1210)
...... .... ...+.+++++. ++..+++.+.. . . -.+....|++.+.| ++-++.++-.+.. ..
T Consensus 177 ~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~-~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~ 249 (272)
T 1d2n_A 177 KDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N-F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MD 249 (272)
T ss_dssp HHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C-S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SC
T ss_pred hhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C-C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hc
Confidence 644322 1122 35688999988 66666665532 1 1 13456778888887 3333333333222 33
Q ss_pred ChHHHHHHHHHhc
Q 040332 353 SLFDWKDALEQLR 365 (1210)
Q Consensus 353 ~~~~w~~~~~~l~ 365 (1210)
....|+.+++.+.
T Consensus 250 ~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 250 PEYRVRKFLALLR 262 (272)
T ss_dssp GGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4456666666554
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=1.4e-05 Score=90.36 Aligned_cols=195 Identities=11% Similarity=0.075 Sum_probs=107.8
Q ss_pred CcccccccHHHHHHHHHHh-CCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC----CCC--------------------
Q 040332 152 DYEAFESRMPTLRSILSAL-EDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK----IFD-------------------- 206 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l-~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~-------------------- 206 (1210)
....++|++..++.+.+++ ..+....+.|+|+.|+||||+|+.+++...... .++
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 4567889999999999988 655544499999999999999999998532110 011
Q ss_pred eEEEEEecCCc-CHHHHHHHHHHHhCCCcccCCc---ccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEee
Q 040332 207 QVVFAEVSQSQ-DIRKIQGEIADKLGLKFHEESE---PGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTA 280 (1210)
Q Consensus 207 ~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~---~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTt 280 (1210)
..+.+..+... ......+++++.+.....-... ....+++-++|+|++...+ ..+.+...+.....+..+|++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t 171 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVC 171 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 01222221111 1111234444443221110000 0002356789999998642 2223322222222457777777
Q ss_pred Cch-hhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHHH
Q 040332 281 RSL-DVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVAR 346 (1210)
Q Consensus 281 R~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 346 (1210)
.+. .+..........+++.+++.++..+.+.+.+......-.-.+....|++.++|.+-.+..+..
T Consensus 172 ~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 172 DSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp SCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 653 222222233468999999999999999887642111000023567888899988765554443
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.98 E-value=3.7e-05 Score=85.67 Aligned_cols=180 Identities=11% Similarity=0.079 Sum_probs=104.3
Q ss_pred cCcccccccHHHHHHHHHHhCCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDV-NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADK 229 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 229 (1210)
....+++|++..++.+.+++..+.. .++-+.|++|+|||++|+.+++... ...+.++.+.. .... +++++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~~-i~~~~~~ 95 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KIDF-VRGPLTN 95 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHHH-HHTHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHHH-HHHHHHH
Confidence 4567889999999999999986554 5677778899999999999998763 22445554442 2333 3333322
Q ss_pred hCCCcccCCcccccCccEEEEEeCCCCcc---chhhhcccCCCCCCCeEEEEeeCchhh-hhhcCCCcceeeecCCCHHH
Q 040332 230 LGLKFHEESEPGREEKKILVILDNIWENL---DLRVVGIPHGDDHRGCKILLTARSLDV-LSRKMDSQQNFAVGILKEVE 305 (1210)
Q Consensus 230 l~~~~~~~~~~~~~~kr~LlvlDdv~~~~---~~~~~~~~~~~~~~gs~iivTtR~~~v-~~~~~~~~~~~~l~~L~~~~ 305 (1210)
..... ...+++-++++||++... ..+.+...+.....+.++|+||....- ..........+.+++++.++
T Consensus 96 ~~~~~------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e 169 (324)
T 3u61_B 96 FASAA------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDED 169 (324)
T ss_dssp HHHBC------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHH
T ss_pred HHhhc------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHH
Confidence 21000 013467899999998653 333333222222245678888776431 11111122478999999888
Q ss_pred HHHHHHH-------HhCCCCCCchHHHHHHHHHHHhCCcchHHHH
Q 040332 306 AWSLFKK-------MAGDYIEGSEFQLVAREVEKECAGLPVSIVT 343 (1210)
Q Consensus 306 ~~~lf~~-------~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 343 (1210)
-.+++.. .+......-.-.+....|++.++|.+-.+..
T Consensus 170 ~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 170 KIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 5443322 2221111110124567788888887654433
No 180
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.97 E-value=0.00029 Score=80.83 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=27.2
Q ss_pred hhcccccEEEEeccccccceeccccccccccccccccccceeecccCcccccccCCCcccccCCCcceeeee
Q 040332 843 SSFVRLQHLQIWGCPVLEEIIVVDDQEERNKNIVMFPQLQYLEMSNLEKLTSFCTGDVNIIEFPSLKELRIS 914 (1210)
Q Consensus 843 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~sL~~L~i~ 914 (1210)
..+.+|+.+.+.+ .++.+. ...+..+.+|+.+.|.+ +++.+.... +..+.+|+.+.+.
T Consensus 294 ~~~~~L~~i~l~~--~i~~I~--------~~aF~~c~~L~~i~lp~--~v~~I~~~a--F~~c~~L~~i~lp 351 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKFIG--------EEAFESCTSLVSIDLPY--LVEEIGKRS--FRGCTSLSNINFP 351 (394)
T ss_dssp TTCTTCCEEEECT--TCCEEC--------TTTTTTCTTCCEECCCT--TCCEECTTT--TTTCTTCCEECCC
T ss_pred ccccccccccccc--ccceec--------hhhhcCCCCCCEEEeCC--cccEEhHHh--ccCCCCCCEEEEC
Confidence 3455566655543 244441 23344455666666542 344443332 3345555555553
No 181
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.97 E-value=8.5e-05 Score=82.75 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCeEEEEEec--
Q 040332 158 SRMPTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSDK--------------------IFDQVVFAEVS-- 214 (1210)
Q Consensus 158 gr~~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs-- 214 (1210)
..++..+.+.+.+..++ .+.+-++|+.|+||||+|+.+++...... |+| ..++...
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~ 84 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG 84 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc
Confidence 34566777777776655 45799999999999999999998764321 234 3445432
Q ss_pred -CCcCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCch-hhhhhcC
Q 040332 215 -QSQDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSL-DVLSRKM 290 (1210)
Q Consensus 215 -~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~-~v~~~~~ 290 (1210)
....+.. .+++.+.+..... .+++-++|+|+++.. +..+.+...+-....++.+|++|.+. .+.....
T Consensus 85 ~~~~~i~~-ir~l~~~~~~~~~-------~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 85 KNTLGVDA-VREVTEKLNEHAR-------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp CSSBCHHH-HHHHHHHTTSCCT-------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred CCCCCHHH-HHHHHHHHhhccc-------cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 2334433 3456665532211 456778999999865 23344433333333466777666654 3333223
Q ss_pred CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHH
Q 040332 291 DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVT 343 (1210)
Q Consensus 291 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 343 (1210)
.....+.+.+++.++..+.+..... .+ .+.+..+++.++|.|..+..
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~~--~~----~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREVT--MS----QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHCC--CC----HHHHHHHHHHTTTCHHHHHH
T ss_pred hcceeeeCCCCCHHHHHHHHHHhcC--CC----HHHHHHHHHHcCCCHHHHHH
Confidence 3456899999999999999988751 11 23457789999999976544
No 182
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.95 E-value=6.2e-05 Score=84.42 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=105.0
Q ss_pred CcccccccHHHHHHHHHHhC-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHH
Q 040332 152 DYEAFESRMPTLRSILSALE-----DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEI 226 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 226 (1210)
....++|++..++.+..++. ......|.|+|++|+|||++|+.+++..... .+.+..+.......+. .+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~~-~~ 100 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDLA-AI 100 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHHH-HH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHHH-HH
Confidence 56789999999999888876 2345678999999999999999998875422 2333333322222222 22
Q ss_pred HHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCC------------------CCCCeEEEEeeCchhhh
Q 040332 227 ADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGD------------------DHRGCKILLTARSLDVL 286 (1210)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~------------------~~~gs~iivTtR~~~v~ 286 (1210)
+.. ..+.-+|++|++.... ....+...+.. ..++..+|.+|......
T Consensus 101 ~~~-------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l 167 (338)
T 3pfi_A 101 LTN-------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGML 167 (338)
T ss_dssp HHT-------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGS
T ss_pred HHh-------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcccc
Confidence 221 2345789999998652 11222111111 11135666666653321
Q ss_pred -hhcCCC-cceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHHH
Q 040332 287 -SRKMDS-QQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTVA 345 (1210)
Q Consensus 287 -~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 345 (1210)
...... ...+.+++++.++..+++.+.+.... ..--.+....|++.+.|.|-.+..+.
T Consensus 168 ~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 168 SNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 111112 35799999999999999988774221 11224566788888999985554443
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.92 E-value=0.00021 Score=80.32 Aligned_cols=178 Identities=7% Similarity=0.026 Sum_probs=103.4
Q ss_pred CcccccccHHHHHHHHHHhC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-
Q 040332 152 DYEAFESRMPTLRSILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD- 218 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~- 218 (1210)
....++|.+..++.+.+.+. ....+.|.|+|++|+|||++|+.+++.... ..+.+..+.-..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTSK 156 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhcc
Confidence 45678899999998887763 134578999999999999999999987632 234454443211
Q ss_pred ----HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc-------------cchhhhcccCC----CCCCCeEEE
Q 040332 219 ----IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN-------------LDLRVVGIPHG----DDHRGCKIL 277 (1210)
Q Consensus 219 ----~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~-------------~~~~~~~~~~~----~~~~gs~ii 277 (1210)
.....+.+..... ..++.+|+||+++.. .....+...+. ....+..||
T Consensus 157 ~~g~~~~~~~~~~~~a~-----------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI 225 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVAR-----------CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVV 225 (357)
T ss_dssp STTHHHHHHHHHHHHHH-----------HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEE
T ss_pred ccchHHHHHHHHHHHHH-----------hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEE
Confidence 1222333332221 345689999998532 01112221111 112345666
Q ss_pred EeeCchhhh-hhc-CCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCC-cchHHHHHHH
Q 040332 278 LTARSLDVL-SRK-MDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAG-LPVSIVTVAR 346 (1210)
Q Consensus 278 vTtR~~~v~-~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~ 346 (1210)
.||...... ... .-....+.+...+.++..+++...+...... -..+....|++.+.| .+-+|..+..
T Consensus 226 ~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 226 GATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 677653321 111 1112467889999999999988776422111 113456788888888 4445555443
No 184
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=9.1e-05 Score=82.98 Aligned_cols=181 Identities=12% Similarity=0.055 Sum_probs=105.4
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEecCCcCHHHHHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD-QVVFAEVSQSQDIRKIQGEIADK 229 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~ 229 (1210)
.....++|.+..++.+..++..++.+.+.++|+.|+||||+|+.+++..... .+. .+..+..+.......+. ++...
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir-~~i~~ 99 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVR-NQIKD 99 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHH-THHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHH-HHHHH
Confidence 3456678999999998888877765559999999999999999999886422 121 13334444433443333 22222
Q ss_pred hCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh-hhhhcCCCcceeeecCCCHHHH
Q 040332 230 LGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSLD-VLSRKMDSQQNFAVGILKEVEA 306 (1210)
Q Consensus 230 l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~~~ 306 (1210)
+..... ...+.+-++|+|+++.. ...+.+...+.......++|++|.... +..........+.+.+++.++.
T Consensus 100 ~~~~~~-----~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~ 174 (340)
T 1sxj_C 100 FASTRQ-----IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAI 174 (340)
T ss_dssp HHHBCC-----SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHH
T ss_pred HHhhcc-----cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHH
Confidence 210000 00234678999998653 223333222222224566777765432 2111122334789999999998
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch
Q 040332 307 WSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV 339 (1210)
Q Consensus 307 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 339 (1210)
.+.+.+.+...... --.+..+.|++.++|.+-
T Consensus 175 ~~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 175 ERRIANVLVHEKLK-LSPNAEKALIELSNGDMR 206 (340)
T ss_dssp HHHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 88887766321111 113456678888888665
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.83 E-value=5.8e-05 Score=87.24 Aligned_cols=181 Identities=15% Similarity=0.127 Sum_probs=100.8
Q ss_pred Cccccc-ccH--HHHHHHHHHhCCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHH
Q 040332 152 DYEAFE-SRM--PTLRSILSALEDPD-VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIA 227 (1210)
Q Consensus 152 ~~~~~~-gr~--~~~~~l~~~l~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 227 (1210)
....|+ |.. .....+......++ ...+.|+|++|+||||||+.+++.......-..+++++... +..++.
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~ 176 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLV 176 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHH
Confidence 345565 533 33344444443333 67899999999999999999999875431112245554432 333343
Q ss_pred HHhCCCcccCCcccccC-ccEEEEEeCCCCcc----chhhhcccCCC-CCCCeEEEEeeCchh---------hhhhcCCC
Q 040332 228 DKLGLKFHEESEPGREE-KKILVILDNIWENL----DLRVVGIPHGD-DHRGCKILLTARSLD---------VLSRKMDS 292 (1210)
Q Consensus 228 ~~l~~~~~~~~~~~~~~-kr~LlvlDdv~~~~----~~~~~~~~~~~-~~~gs~iivTtR~~~---------v~~~~~~~ 292 (1210)
..+....... -..... +.-+|++||++... ..+.+...+.. ...|..||+||.+.. +.. .+..
T Consensus 177 ~~~~~~~~~~-~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s-R~~~ 254 (440)
T 2z4s_A 177 DSMKEGKLNE-FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS-RFQM 254 (440)
T ss_dssp HHHHTTCHHH-HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH-HHHS
T ss_pred HHHHcccHHH-HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh-hccC
Confidence 3332110000 000012 56689999997542 11222222110 124678888887632 111 1222
Q ss_pred cceeeecCCCHHHHHHHHHHHhC--CCCCCchHHHHHHHHHHHhCCcchHHHH
Q 040332 293 QQNFAVGILKEVEAWSLFKKMAG--DYIEGSEFQLVAREVEKECAGLPVSIVT 343 (1210)
Q Consensus 293 ~~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~~i~~~c~glPlai~~ 343 (1210)
...+.+++++.++-.+++.+.+. +..-++ +....|++.++|.+-.+..
T Consensus 255 g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 255 GLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp SBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 35789999999999999988774 111122 2456788888888754443
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.83 E-value=8.1e-05 Score=82.28 Aligned_cols=147 Identities=10% Similarity=0.076 Sum_probs=86.7
Q ss_pred cccccHHHHHHHHHHhC---------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC--eEEEEEecCCc
Q 040332 155 AFESRMPTLRSILSALE---------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD--QVVFAEVSQSQ 217 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~ 217 (1210)
.++|.+..++.+.+.+. ......+.|+|.+|+|||++|+.+++......... ..+.++.+.-.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 47788888887775543 23445799999999999999999998875432222 23333322110
Q ss_pred -----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc-----------cchhhhcccCCCCCCCeEEEEeeC
Q 040332 218 -----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN-----------LDLRVVGIPHGDDHRGCKILLTAR 281 (1210)
Q Consensus 218 -----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~-----------~~~~~~~~~~~~~~~gs~iivTtR 281 (1210)
....-...+.... +.-+|++|+++.. .....+...+.....+..||.||.
T Consensus 112 ~~~~g~~~~~~~~~~~~~--------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~ 177 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA--------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY 177 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH--------------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC
T ss_pred hhcccccHHHHHHHHHhc--------------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1111222232222 2238999999732 223334333333445667888886
Q ss_pred chhhhh------hcCC-CcceeeecCCCHHHHHHHHHHHhC
Q 040332 282 SLDVLS------RKMD-SQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 282 ~~~v~~------~~~~-~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
...... .... ....+.+++++.++-.+++...+.
T Consensus 178 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 178 ADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 532210 0001 125789999999999999887764
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.82 E-value=0.0006 Score=75.21 Aligned_cols=180 Identities=16% Similarity=0.161 Sum_probs=104.4
Q ss_pred cCcccccccHHHHHHHHHHhC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc-
Q 040332 151 KDYEAFESRMPTLRSILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ- 217 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~- 217 (1210)
....+++|.+..++.+...+. ....+.|.++|++|+|||+||+.+++.... ...+.+..+.-.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh
Confidence 345678899888888776652 123468999999999999999999998621 122333333211
Q ss_pred ----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc---------c----hhhhcccC---CCCCCCeEEE
Q 040332 218 ----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL---------D----LRVVGIPH---GDDHRGCKIL 277 (1210)
Q Consensus 218 ----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~---------~----~~~~~~~~---~~~~~gs~ii 277 (1210)
......+.+..... ..+..+|++|+++... . ...+...+ .....+..||
T Consensus 85 ~~~g~~~~~~~~lf~~a~-----------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLAR-----------ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp SSCCSCHHHHHHHHHHHH-----------HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred hhhhHHHHHHHHHHHHHH-----------hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 12333344433221 3457899999997541 0 11111111 1123456666
Q ss_pred EeeCchhhhhh--cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCc-chHHHHHHH
Q 040332 278 LTARSLDVLSR--KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGL-PVSIVTVAR 346 (1210)
Q Consensus 278 vTtR~~~v~~~--~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~~ 346 (1210)
.||........ ..--...+.++..+.++-.+++..++....... -......|++.+.|. +-.|..+..
T Consensus 154 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 154 GATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 67765432111 011224678899999999999988875332111 134567888888887 434554443
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.81 E-value=0.00036 Score=77.23 Aligned_cols=180 Identities=16% Similarity=0.150 Sum_probs=105.5
Q ss_pred cccCcccccccHHHHHHHHHHhC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 149 SSKDYEAFESRMPTLRSILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
|.....+++|.+..++.+...+. ....+-|.++|++|+|||++|+.+++..... .+.+..+.-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~~l 87 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSDL 87 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchHHH
Confidence 34456788999999999988772 1124679999999999999999999886422 233332211
Q ss_pred -----cCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCccc-------------hhhhcccC---CCCCCCeE
Q 040332 217 -----QDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENLD-------------LRVVGIPH---GDDHRGCK 275 (1210)
Q Consensus 217 -----~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~~-------------~~~~~~~~---~~~~~gs~ 275 (1210)
......++.+..... ..+..+|++|+++.... ...+...+ .....+..
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~-----------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMAR-----------ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHH-----------HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred hhcccchHHHHHHHHHHHHH-----------hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 112223333332221 34567999999974311 12221111 12234566
Q ss_pred EEEeeCchhhhhh--cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCc-chHHHHHH
Q 040332 276 ILLTARSLDVLSR--KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGL-PVSIVTVA 345 (1210)
Q Consensus 276 iivTtR~~~v~~~--~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 345 (1210)
||.||........ ..--...+.++..+.++-.+++..++....... -......|++.+.|. +-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7767776432211 001124678889999999999999886432211 123456888888774 43444433
No 189
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.81 E-value=0.00055 Score=78.05 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=101.7
Q ss_pred ccCcccccccHHHHHHHHHHhC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc
Q 040332 150 SKDYEAFESRMPTLRSILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ 217 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 217 (1210)
......++|++..++.+..++. ....+-|.|+|.+|+|||++|+.+++.... ..+.+..+.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 3456788999999999988772 123468999999999999999999887542 12333332211
Q ss_pred -----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc-------------chhhhcccC---C-CCCCCeE
Q 040332 218 -----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL-------------DLRVVGIPH---G-DDHRGCK 275 (1210)
Q Consensus 218 -----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~-------------~~~~~~~~~---~-~~~~gs~ 275 (1210)
.....+..+..... ..+..+|+||+++... ....+...+ . .......
T Consensus 186 ~~~~g~~~~~~~~~~~~a~-----------~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVAR-----------ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp ------CHHHHHHHHHHHH-----------HSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred ccccchHHHHHHHHHHHHH-----------hcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 11222233332221 2345689999996430 011111111 1 1123455
Q ss_pred EEEeeCchhhhh-hcCCC-cceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch-HHHHH
Q 040332 276 ILLTARSLDVLS-RKMDS-QQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV-SIVTV 344 (1210)
Q Consensus 276 iivTtR~~~v~~-~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 344 (1210)
||.||....... ..... ...+.+...+.++-.+++...+...... -..+....|++.+.|..- +|..+
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 666676533211 11112 2468889999999999998887532221 123456788899888654 44444
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.77 E-value=3.8e-05 Score=77.66 Aligned_cols=49 Identities=27% Similarity=0.321 Sum_probs=43.4
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....++||+.+++.+.+.+.....+.+.|+|.+|+||||+|+.+++...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999877677889999999999999999998864
No 191
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.76 E-value=0.00014 Score=82.68 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=38.8
Q ss_pred cccccccHHHHHH---HHHHhCCCC--ceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 153 YEAFESRMPTLRS---ILSALEDPD--VNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 153 ~~~~~gr~~~~~~---l~~~l~~~~--~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...|+|++..++. +...+..+. .+.+.|+|++|+|||++|+.+++....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6689999988766 444444443 358999999999999999999998763
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.68 E-value=0.00049 Score=77.10 Aligned_cols=177 Identities=16% Similarity=0.160 Sum_probs=101.1
Q ss_pred CcccccccHHHHHHHHHHhC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC---
Q 040332 152 DYEAFESRMPTLRSILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS--- 216 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--- 216 (1210)
....++|.+..++.+...+. ....+-|.++|++|+|||++|+.+++..... .+.+..+.-
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~~l~~~ 123 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSDLVSK 123 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHHHHHSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHHHHhhh
Confidence 45678899998888887762 1123568899999999999999999987422 223332210
Q ss_pred --cCHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCccc-------------hhhhcccC---CCCCCCeEEEE
Q 040332 217 --QDIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENLD-------------LRVVGIPH---GDDHRGCKILL 278 (1210)
Q Consensus 217 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~~-------------~~~~~~~~---~~~~~gs~iiv 278 (1210)
......++.+..... ..+..+|+||+++.... ...+...+ .....+..||.
T Consensus 124 ~~g~~~~~~~~~f~~a~-----------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~ 192 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMAR-----------ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLG 192 (355)
T ss_dssp C---CHHHHHHHHHHHH-----------HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEE
T ss_pred hcchHHHHHHHHHHHHH-----------HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEe
Confidence 011222222222211 34678999999975310 12221111 11234566776
Q ss_pred eeCchhhhhh--cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCc-chHHHHHH
Q 040332 279 TARSLDVLSR--KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGL-PVSIVTVA 345 (1210)
Q Consensus 279 TtR~~~v~~~--~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 345 (1210)
||........ ...-...+.+...+.++-.+++..++....... -......|++.+.|. +-.|..+.
T Consensus 193 atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 193 ATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7765432110 011234678899999999999988876432111 133457888899884 43454443
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.66 E-value=0.001 Score=76.95 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=102.1
Q ss_pred ccCcccccccHHHHHHHHHHhC------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc
Q 040332 150 SKDYEAFESRMPTLRSILSALE------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ 217 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 217 (1210)
......++|.+..++.+...+. ....+.|.++|++|+|||+||+.+++.... .-++.++...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~~ 203 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSSD 203 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC-
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHHH
Confidence 3456678899999888887763 123478999999999999999999998621 1122222211
Q ss_pred CHH-------HHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc-------------chhhhcccCCC---CCCCe
Q 040332 218 DIR-------KIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL-------------DLRVVGIPHGD---DHRGC 274 (1210)
Q Consensus 218 ~~~-------~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~-------------~~~~~~~~~~~---~~~gs 274 (1210)
-.. ..++.+.... ...+..+|++|+++... ....+...+.. ...+.
T Consensus 204 l~~~~~g~~~~~~~~~f~~a-----------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLA-----------RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp --------CCCTHHHHHHHH-----------HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred HHhhhcchHHHHHHHHHHHH-----------HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 000 0111111111 03456899999997541 11222222221 23456
Q ss_pred EEEEeeCchhhhhh--cCCCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCc-chHHHHHH
Q 040332 275 KILLTARSLDVLSR--KMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGL-PVSIVTVA 345 (1210)
Q Consensus 275 ~iivTtR~~~v~~~--~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 345 (1210)
.||.||........ ..-....+.++..+.++-.++|..++....... -......|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67777765432211 111224678888899999999988875332111 124456888889884 43444443
No 194
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.65 E-value=0.0011 Score=72.49 Aligned_cols=178 Identities=13% Similarity=0.095 Sum_probs=102.0
Q ss_pred cCcccccccHHHHHHHHHHhCC------------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc-
Q 040332 151 KDYEAFESRMPTLRSILSALED------------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ- 217 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~- 217 (1210)
.....++|.+..++.+..++.. ...+.+.|+|++|+||||+|+.+++.... ..+.+..+.-.
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 3456789999999988877631 23578899999999999999999987642 12334433221
Q ss_pred ----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCccc-------------hhhhc---ccCCC--CCCCeE
Q 040332 218 ----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENLD-------------LRVVG---IPHGD--DHRGCK 275 (1210)
Q Consensus 218 ----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~~-------------~~~~~---~~~~~--~~~gs~ 275 (1210)
......+.+..... ..+..+|++|+++.... ...+. ..++. .+.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~-----------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVAR-----------HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp SSCSCHHHHHHHHHHHHH-----------HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred cccchHHHHHHHHHHHHH-----------HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 22333333333221 34567899999864310 00111 11111 123456
Q ss_pred EEEeeCchhhhhh-cC-CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch-HHHHHH
Q 040332 276 ILLTARSLDVLSR-KM-DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV-SIVTVA 345 (1210)
Q Consensus 276 iivTtR~~~v~~~-~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 345 (1210)
||.||........ .. .....+.++..+.++-.+++...+...... --.+....|++.+.|.+- ++..+.
T Consensus 162 vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 162 VLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP-LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7777776432110 00 112467778888888888888776422111 113456788889988875 444443
No 195
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=0.00025 Score=77.09 Aligned_cols=146 Identities=16% Similarity=0.061 Sum_probs=91.5
Q ss_pred ccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhcc--CCCCeEEEEEecC-CcCHHHHHHHHHHHhCCCc
Q 040332 158 SRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSD--KIFDQVVFAEVSQ-SQDIRKIQGEIADKLGLKF 234 (1210)
Q Consensus 158 gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 234 (1210)
|.++.++.+.+.+..++.+.+-++|++|+||||+|+.+.+..... .+.| ..++..+. ...+..+ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 345556777777776667899999999999999999999853211 2333 35555543 3444443 45666553221
Q ss_pred ccCCcccccCccEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCch-hhhhhcCCCcceeeecCCCHHHHHHHHH
Q 040332 235 HEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTARSL-DVLSRKMDSQQNFAVGILKEVEAWSLFK 311 (1210)
Q Consensus 235 ~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~ 311 (1210)
. .+++-++|+|+++.. ...+.+...+-...+.+.+|++|.+. .+....... .+++.+++.++..+.+.
T Consensus 79 ~-------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 79 E-------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp S-------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHH
T ss_pred c-------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHH
Confidence 1 345778899999864 34444443333333466776666543 343322222 89999999999999988
Q ss_pred HHh
Q 040332 312 KMA 314 (1210)
Q Consensus 312 ~~~ 314 (1210)
+.+
T Consensus 150 ~~~ 152 (305)
T 2gno_A 150 EKI 152 (305)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.58 E-value=0.00028 Score=77.28 Aligned_cols=173 Identities=13% Similarity=0.132 Sum_probs=96.8
Q ss_pred ccCcccccccHHHHHHHHHHhCC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 150 SKDYEAFESRMPTLRSILSALED-------------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
.....+++|.+..++++..++.. ...+.|.|+|++|+|||++|+.+++..... .+.+ +
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~v--~-- 81 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISI--K-- 81 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEEE--C--
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEEE--E--
Confidence 33456788999888887766531 345689999999999999999999876421 2222 2
Q ss_pred cCHHHHHHHHHHHhCCCcccCCc---ccccCccEEEEEeCCCCcc----------------chhhhcccCC--CCCCCeE
Q 040332 217 QDIRKIQGEIADKLGLKFHEESE---PGREEKKILVILDNIWENL----------------DLRVVGIPHG--DDHRGCK 275 (1210)
Q Consensus 217 ~~~~~~~~~i~~~l~~~~~~~~~---~~~~~kr~LlvlDdv~~~~----------------~~~~~~~~~~--~~~~gs~ 275 (1210)
..++..... +........ ........+|++|+++... ....+...+. ....+..
T Consensus 82 --~~~l~~~~~---g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~ 156 (301)
T 3cf0_A 82 --GPELLTMWF---GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156 (301)
T ss_dssp --HHHHHHHHH---TTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEE
T ss_pred --hHHHHhhhc---CchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEE
Confidence 222222111 110000000 0003456899999997421 0112211111 1234567
Q ss_pred EEEeeCchhhhhh-cCC---CcceeeecCCCHHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHhCCcchH
Q 040332 276 ILLTARSLDVLSR-KMD---SQQNFAVGILKEVEAWSLFKKMAGDYI--EGSEFQLVAREVEKECAGLPVS 340 (1210)
Q Consensus 276 iivTtR~~~v~~~-~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPla 340 (1210)
||.||........ ... -...+.++..+.++-.+++........ ....+ ..+++.+.|.|-+
T Consensus 157 vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 157 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred EEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 8888876543211 111 224788999999999999988775322 11222 3556667776643
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.58 E-value=3.7e-05 Score=86.09 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=91.9
Q ss_pred hhhhcCCcceEEEecCcccccCCccccCCCCCcEEEecCccCCC--CCCCC--CCCCCcEEEeecC--C------CcccC
Q 040332 544 NFFERMIQVRVINLSYVDLLSLPSSLVLLSNLRTLSLYYCKLLD--ISGIG--DLKKLEFLCLRGC--D------IRQLP 611 (1210)
Q Consensus 544 ~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~--~L~~L~~L~l~~~--~------l~~lp 611 (1210)
.++..+++|+.|+++++.-..+|. + .+.+|+.|++..|.+.. ...+. .+++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 456778899999998874345555 4 38899999999888765 34443 7899999998632 1 22222
Q ss_pred ccc--CCCCCCCEEecCCCCCCCc-cChhhh--cCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccCC
Q 040332 612 IEV--GELICLKLLDLRDCSKLEV-IPPHIL--SNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDI 686 (1210)
Q Consensus 612 ~~i--~~l~~L~~L~l~~~~~~~~-~p~~~l--~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 686 (1210)
..+ +.+++|++|++.+| .+.. .+..+. ..+++|++|+++.|.+.... .......+..+++|+.|+++.|.+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G---~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEG---ARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH---HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHH---HHHHHhhcccCCcceEEECCCCcC
Confidence 222 35789999999988 3332 222221 35789999999988762210 012344556789999999988865
Q ss_pred C
Q 040332 687 N 687 (1210)
Q Consensus 687 ~ 687 (1210)
.
T Consensus 320 ~ 320 (362)
T 2ra8_A 320 S 320 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 198
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.49 E-value=8.6e-05 Score=83.09 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=40.8
Q ss_pred hcCCcceEEEecCcccc----------cCCccccCCCCCcEEEecCccCCCCCCCCCCCCCcEEEeecCCCccc-Cccc-
Q 040332 547 ERMIQVRVINLSYVDLL----------SLPSSLVLLSNLRTLSLYYCKLLDISGIGDLKKLEFLCLRGCDIRQL-PIEV- 614 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~----------~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~l-p~~i- 614 (1210)
.++++|+.|.+...... .++..+..+++|+.|.|++|.-...+.+. +++|++|++..|.+..- ...+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHH
Confidence 44566777776543221 23344456677777777766322222232 56666666666554311 1112
Q ss_pred -CCCCCCCEEecC
Q 040332 615 -GELICLKLLDLR 626 (1210)
Q Consensus 615 -~~l~~L~~L~l~ 626 (1210)
..+++|++|+++
T Consensus 215 ~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 215 GSDLPNLEKLVLY 227 (362)
T ss_dssp HSBCTTCCEEEEE
T ss_pred HccCCCCcEEEEe
Confidence 245666666653
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.48 E-value=0.00038 Score=88.06 Aligned_cols=152 Identities=12% Similarity=0.152 Sum_probs=87.9
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC---CC-C-eEEEEEecCC-------cC
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK---IF-D-QVVFAEVSQS-------QD 218 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---~F-~-~~~wv~vs~~-------~~ 218 (1210)
.....++||++++.+++..+......-+.++|.+|+||||+|+.+++...... .. + .+++++++.- ..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~ 246 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 246 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------C
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchH
Confidence 34567899999999999998766666788999999999999999999863211 01 1 2344433221 12
Q ss_pred HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc-------chh---hhcccCCCCCCCeEEEEeeCchhh---
Q 040332 219 IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL-------DLR---VVGIPHGDDHRGCKILLTARSLDV--- 285 (1210)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~-------~~~---~~~~~~~~~~~gs~iivTtR~~~v--- 285 (1210)
...-++.+...+.. .+++.+|++|++.... .++ .+...+ .. .+..+|.+|.....
T Consensus 247 ~~~~l~~~~~~~~~----------~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~~~~~ 314 (854)
T 1qvr_A 247 FEERLKAVIQEVVQ----------SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDEYREI 314 (854)
T ss_dssp HHHHHHHHHHHHHT----------TCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHh----------cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchHHhhh
Confidence 22334444443321 2457899999997542 121 122111 11 23445655544321
Q ss_pred --hhhcCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 286 --LSRKMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 286 --~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
..........+.+++++.++..+++....
T Consensus 315 ~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 315 EKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp TTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred ccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 11112223468999999999999987543
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0011 Score=73.75 Aligned_cols=172 Identities=15% Similarity=0.184 Sum_probs=103.3
Q ss_pred cccCcccccccHHHHHHHHHHhC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 149 SSKDYEAFESRMPTLRSILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
|.....++.|-++.+++|.+.+. -...+-|-++|++|.|||.||+++++..... .+.|..+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHH
Confidence 34456778888888887766553 1235778999999999999999999987643 23344332
Q ss_pred Cc-----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc----------c------hhhhcccCC--CCCC
Q 040332 216 SQ-----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL----------D------LRVVGIPHG--DDHR 272 (1210)
Q Consensus 216 ~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~----------~------~~~~~~~~~--~~~~ 272 (1210)
-. ..+..++++..... .....+|++|+++... . ...+...+. ....
T Consensus 218 l~sk~vGese~~vr~lF~~Ar-----------~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAR-----------EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHH-----------HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccccchHHHHHHHHHHHHH-----------HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 21 12334444443321 4557899999987431 0 111211111 2334
Q ss_pred CeEEEEeeCchhhhhh---cCC-CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 273 GCKILLTARSLDVLSR---KMD-SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 273 gs~iivTtR~~~v~~~---~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
+..||.||...+.... ..+ -...+.++..+.++-.++|+.+.......++. -...|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 5667778876554321 112 23578899999999999998887533222111 1346777887754
No 201
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.48 E-value=0.0003 Score=82.12 Aligned_cols=149 Identities=14% Similarity=0.185 Sum_probs=83.1
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC---CC-Ce-EEEEEecCCc--CHHHHHH
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK---IF-DQ-VVFAEVSQSQ--DIRKIQG 224 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---~F-~~-~~wv~vs~~~--~~~~~~~ 224 (1210)
....++||+.+++.++..+......-+.++|.+|+|||++|+.+++...... .. +. .+.++.+..+ ....-++
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~ 257 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHH
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHH
Confidence 3557899999999999999765556678999999999999999999863211 00 11 2233332100 0011122
Q ss_pred HHHHHhCCCcccCCcccccCccEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhh------hhhcCCCcceeee
Q 040332 225 EIADKLGLKFHEESEPGREEKKILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDV------LSRKMDSQQNFAV 298 (1210)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v------~~~~~~~~~~~~l 298 (1210)
.+.+.+. ..++.+|++| ...+....+...+.. ...++|.+|..... ..........+.+
T Consensus 258 ~~~~~~~-----------~~~~~iLfiD--~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v 322 (468)
T 3pxg_A 258 KVMDEIR-----------QAGNIILFID--AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (468)
T ss_dssp HHHHHHH-----------TCCCCEEEEC--C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred HHHHHHH-----------hcCCeEEEEe--CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCcccee
Confidence 2222221 3456788899 222222333333322 23556665554431 1111112346899
Q ss_pred cCCCHHHHHHHHHHHhC
Q 040332 299 GILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 299 ~~L~~~~~~~lf~~~~~ 315 (1210)
++.+.++..+++...+.
T Consensus 323 ~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 323 DQPSVDESIQILQGLRD 339 (468)
T ss_dssp CCCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987664
No 202
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.47 E-value=4.4e-05 Score=76.66 Aligned_cols=116 Identities=15% Similarity=0.093 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHhCC---CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcc
Q 040332 159 RMPTLRSILSALED---PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFH 235 (1210)
Q Consensus 159 r~~~~~~l~~~l~~---~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 235 (1210)
+...++.+.+++.+ .....+.|+|++|+||||||+.+++.......+. +++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 34444555544432 3457899999999999999999999875322222 33443 34444444433321111
Q ss_pred cCCcccccCccEEEEEeCCCC--ccchh--hhcccCCC-CCCCeEEEEeeCc
Q 040332 236 EESEPGREEKKILVILDNIWE--NLDLR--VVGIPHGD-DHRGCKILLTARS 282 (1210)
Q Consensus 236 ~~~~~~~~~kr~LlvlDdv~~--~~~~~--~~~~~~~~-~~~gs~iivTtR~ 282 (1210)
. .....-.+.-+|||||++. .+.|. .+...+.. ...|..||+||..
T Consensus 92 ~-~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 T-KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp S-HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred H-HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0 0000123445899999983 33342 12111111 1246678888874
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.46 E-value=2.5e-05 Score=78.68 Aligned_cols=110 Identities=14% Similarity=0.074 Sum_probs=66.9
Q ss_pred hhhhcCCcceEEEecCc-ccc-----cCCccccCCCCCcEEEecCccCCC--C----CCCCCCCCCcEEEeecCCCcc--
Q 040332 544 NFFERMIQVRVINLSYV-DLL-----SLPSSLVLLSNLRTLSLYYCKLLD--I----SGIGDLKKLEFLCLRGCDIRQ-- 609 (1210)
Q Consensus 544 ~~~~~l~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~-- 609 (1210)
..+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.+ . ..+...++|++|++++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566788888899888 775 245666677788888888887765 1 223445667777777776652
Q ss_pred ---cCcccCCCCCCCEEec--CCCCCCCc-----cChhhhcCCCcccEEEccCCCC
Q 040332 610 ---LPIEVGELICLKLLDL--RDCSKLEV-----IPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 610 ---lp~~i~~l~~L~~L~l--~~~~~~~~-----~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
+...+...++|++|++ ++| .++. +.. .+...++|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 4455555666666666 444 3333 111 123445556666555543
No 204
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.43 E-value=0.0012 Score=82.55 Aligned_cols=151 Identities=15% Similarity=0.196 Sum_probs=94.6
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEE-EEec-------CCcC
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK----IFDQVVF-AEVS-------QSQD 218 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~w-v~vs-------~~~~ 218 (1210)
.....++||+.+++++++.+......-+.++|.+|+||||+|+.+++...... .++..+| ++.+ ....
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~ 262 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 262 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSC
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccch
Confidence 34567899999999999999876667788999999999999999998763221 1233333 2211 1223
Q ss_pred HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc----------cc-hhhhcccCCCCCCCeEEEEeeCchhhhh
Q 040332 219 IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN----------LD-LRVVGIPHGDDHRGCKILLTARSLDVLS 287 (1210)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~----------~~-~~~~~~~~~~~~~gs~iivTtR~~~v~~ 287 (1210)
.+..++.+.+.+. ..++.+|++|++... .+ ...+...+ .. .+.++|.+|.......
T Consensus 263 ~e~~l~~~~~~~~-----------~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~~-~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 263 FEKRFKALLKQLE-----------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SS-GKIRVIGSTTYQEFSN 329 (758)
T ss_dssp HHHHHHHHHHHHS-----------SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-SS-CCCEEEEEECHHHHHC
T ss_pred HHHHHHHHHHHHH-----------hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-hC-CCeEEEEEeCchHHhh
Confidence 4555556665553 234688999999754 11 12233322 22 3456666665543211
Q ss_pred h------cCCCcceeeecCCCHHHHHHHHHHHh
Q 040332 288 R------KMDSQQNFAVGILKEVEAWSLFKKMA 314 (1210)
Q Consensus 288 ~------~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (1210)
. .......+.++..+.++..+++...+
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 0 01122368899999999988887654
No 205
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.43 E-value=6.9e-05 Score=71.95 Aligned_cols=110 Identities=10% Similarity=0.059 Sum_probs=62.6
Q ss_pred cccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCC
Q 040332 155 AFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGL 232 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (1210)
.++|+...+.++.+.+. .....-|-|+|.+|+|||++|+.+++..... .... + +..+...+.... .....+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-~~~~-v-~~~~~~~~~~~~-~~~~~~--- 74 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-QGEF-V-YRELTPDNAPQL-NDFIAL--- 74 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-TSCC-E-EEECCTTTSSCH-HHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-CCCE-E-EECCCCCcchhh-hcHHHH---
Confidence 46899999988888775 2333457899999999999999999864321 1122 2 555443222111 111111
Q ss_pred CcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCc
Q 040332 233 KFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDDHRGCKILLTARS 282 (1210)
Q Consensus 233 ~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~iivTtR~ 282 (1210)
...-.|++|+++... ....+...+.......+||.||..
T Consensus 75 -----------a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 75 -----------AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -----------HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -----------cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 112368999998652 223333222223345678887764
No 206
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.36 E-value=0.0035 Score=71.67 Aligned_cols=108 Identities=7% Similarity=0.110 Sum_probs=47.1
Q ss_pred cccchhhhcCC-cceEEEecCcccccC-CccccCCCCCcEEEecCcc---CCC--CCCCCCCCCCcEEEeecCCCcccCc
Q 040332 540 SIANNFFERMI-QVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCK---LLD--ISGIGDLKKLEFLCLRGCDIRQLPI 612 (1210)
Q Consensus 540 ~~~~~~~~~l~-~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~---~~~--~~~i~~L~~L~~L~l~~~~l~~lp~ 612 (1210)
.+....|.+++ .|+.+.+..+ ++.+ ..+|.+|.+|+.+.+..+. ++. ...|..+.+|+.+.+.. .+..++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehh
Confidence 34445555553 3555555443 3333 2345555666666555442 222 22244444444433322 1333322
Q ss_pred -ccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEcc
Q 040332 613 -EVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIG 651 (1210)
Q Consensus 613 -~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~ 651 (1210)
.+..+.+|+.+.+.. .+..++...+..+.+|+.+.+.
T Consensus 131 ~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECC
T ss_pred hhhhhhcccccccccc--eeeeecccceeccccccccccc
Confidence 234444555554433 2334444444444445444443
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0023 Score=72.43 Aligned_cols=169 Identities=19% Similarity=0.263 Sum_probs=100.9
Q ss_pred ccCcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 150 SKDYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
.....++.|-++.+++|...+. . ...+-|-++|++|+|||+||+++++..... .+.+..+.-
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l 251 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGI 251 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGT
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhh
Confidence 3456677888888877766553 1 235789999999999999999999987643 233444332
Q ss_pred cC-----HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc----------------chhhhcccCC--CCCCC
Q 040332 217 QD-----IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL----------------DLRVVGIPHG--DDHRG 273 (1210)
Q Consensus 217 ~~-----~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~----------------~~~~~~~~~~--~~~~g 273 (1210)
.+ ....++.+..... .....+|++|+++... .+..+...+. ....+
T Consensus 252 ~sk~~Gese~~ir~~F~~A~-----------~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAK-----------EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHH-----------HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred ccccchHHHHHHHHHHHHHH-----------hcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 11 2233333333221 4567899999987420 0111222221 22345
Q ss_pred eEEEEeeCchhhhhhcCC----CcceeeecCCCHHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHhCCcc
Q 040332 274 CKILLTARSLDVLSRKMD----SQQNFAVGILKEVEAWSLFKKMAGDYI--EGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 274 s~iivTtR~~~v~~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 338 (1210)
..||.||..........- -...+.++..+.++-.++|+.+..... ...++ ..|++.+.|.-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 678888876554322121 124678888888888888887764322 12223 46677777654
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.32 E-value=0.00094 Score=74.12 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=89.2
Q ss_pred HHHHHHHHHhCCC--CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCC
Q 040332 161 PTLRSILSALEDP--DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEES 238 (1210)
Q Consensus 161 ~~~~~l~~~l~~~--~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 238 (1210)
.....+..+...+ ....+.|+|++|+||||||+.+++..... -..+++++.. .+...+...+.......
T Consensus 21 ~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~~~~~~- 91 (324)
T 1l8q_A 21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKKGTINE- 91 (324)
T ss_dssp HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHHTCHHH-
T ss_pred HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHcCcHHH-
Confidence 3344455544433 34688999999999999999999987532 1224555432 22333333221100000
Q ss_pred cccccCccEEEEEeCCCCcc---ch-hhhcccCCC-CCCCeEEEEeeCchhh-----hhh---cCCCcceeeecCCCHHH
Q 040332 239 EPGREEKKILVILDNIWENL---DL-RVVGIPHGD-DHRGCKILLTARSLDV-----LSR---KMDSQQNFAVGILKEVE 305 (1210)
Q Consensus 239 ~~~~~~kr~LlvlDdv~~~~---~~-~~~~~~~~~-~~~gs~iivTtR~~~v-----~~~---~~~~~~~~~l~~L~~~~ 305 (1210)
-.....+.-+|++||+.... .+ +.+...+.. ...|..||+||..... ... .......+.+++ +.++
T Consensus 92 ~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e 170 (324)
T 1l8q_A 92 FRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKT 170 (324)
T ss_dssp HHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHH
T ss_pred HHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHH
Confidence 00001235689999997643 12 222222110 1235578888764321 100 112225689999 9999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcch
Q 040332 306 AWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPV 339 (1210)
Q Consensus 306 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 339 (1210)
..+++...+..... .--.+....|++.+ |..-
T Consensus 171 ~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 171 RFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHH
Confidence 99999887742111 11134566777777 6543
No 209
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.30 E-value=4.7e-05 Score=80.50 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=37.9
Q ss_pred CCCCCcEEEecCccCCCCC----CCCCCCCCcEEEeecCCCcccCcccCCCC--CCCEEecCCCCCCCccC------hhh
Q 040332 571 LLSNLRTLSLYYCKLLDIS----GIGDLKKLEFLCLRGCDIRQLPIEVGELI--CLKLLDLRDCSKLEVIP------PHI 638 (1210)
Q Consensus 571 ~l~~L~~L~L~~~~~~~~~----~i~~L~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p------~~~ 638 (1210)
++++|+.|+|++|.+...+ .+..+++|++|+|++|.+..+. .+..+. +|++|++++|.....+| ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3445555555555544421 2234555555555555555442 233333 56666666653333333 123
Q ss_pred hcCCCcccEEEc
Q 040332 639 LSNLSHLEELNI 650 (1210)
Q Consensus 639 l~~L~~L~~L~l 650 (1210)
+..+++|+.|+-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 456666666653
No 210
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0033 Score=70.77 Aligned_cols=170 Identities=12% Similarity=0.139 Sum_probs=100.8
Q ss_pred cCcccccccHHHHHHHHHHhC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc
Q 040332 151 KDYEAFESRMPTLRSILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ 217 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 217 (1210)
....++.|-++.+++|.+.+. -...+-|-++|++|+|||+||+++++..... .+.|..+.-.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~ 280 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELV 280 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhh
Confidence 345677888888888876542 1346788999999999999999999987643 2334333211
Q ss_pred -----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--------c--------hhhhcccCC--CCCCCe
Q 040332 218 -----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--------D--------LRVVGIPHG--DDHRGC 274 (1210)
Q Consensus 218 -----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--------~--------~~~~~~~~~--~~~~gs 274 (1210)
..+..++++..... .....+|++|+++... . ...+...+. ....+.
T Consensus 281 sk~vGesek~ir~lF~~Ar-----------~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMAR-----------TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHH-----------HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred cccCCHHHHHHHHHHHHHH-----------hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 12334444433321 4567899999987431 0 011111111 223455
Q ss_pred EEEEeeCchhhhhh---cCC-CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 275 KILLTARSLDVLSR---KMD-SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 275 ~iivTtR~~~v~~~---~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
.||.||........ ..+ -...+.++..+.++-.++|+.+.......... ....|++.+.|.-
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNST 415 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSCC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCCC
Confidence 67777766443321 112 23578888889999999998887533222111 1346777887753
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0023 Score=71.30 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=101.0
Q ss_pred cccCcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 149 SSKDYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
|.....++.|-++.+++|.+.+. . ...+-|-++|++|.|||.||+++++..... .+.+..+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~ 251 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSE 251 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHH
Confidence 34456777788888877766542 1 235789999999999999999999987643 22333322
Q ss_pred Cc-----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc------------c----hhhhcccC--CCCCC
Q 040332 216 SQ-----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL------------D----LRVVGIPH--GDDHR 272 (1210)
Q Consensus 216 ~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~------------~----~~~~~~~~--~~~~~ 272 (1210)
-. ..+..++.+..... .....+|++|+++... . ...+...+ .....
T Consensus 252 l~sk~vGesek~ir~lF~~Ar-----------~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAG-----------ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHH-----------HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred hhhccCchHHHHHHHHHHHHH-----------hcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 11 12334444443321 3457899999886320 0 11111111 12334
Q ss_pred CeEEEEeeCchhhhhhcCC---C-cceeeecCCCHHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHhCCcc
Q 040332 273 GCKILLTARSLDVLSRKMD---S-QQNFAVGILKEVEAWSLFKKMAGDYI--EGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 273 gs~iivTtR~~~v~~~~~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 338 (1210)
+..||.||...+......- . ...+.++.-+.++-.++|..+..... ...++ ..|++.+.|.-
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 5677778877655432221 1 23578888888888899988875322 12223 46677777653
No 212
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.26 E-value=0.0014 Score=81.84 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=83.5
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccC-C---CCe-EEEEEecCC--cCHHHHHH
Q 040332 152 DYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDK-I---FDQ-VVFAEVSQS--QDIRKIQG 224 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-~---F~~-~~wv~vs~~--~~~~~~~~ 224 (1210)
....++||++++++++..+......-+.++|.+|+|||++|+.+++...... . .+. .+.++.... ...+.-++
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~ 257 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHH
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHH
Confidence 4567899999999999999766556688999999999999999999863211 0 111 122222110 00111122
Q ss_pred HHHHHhCCCcccCCcccccCccEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhh------hhhcCCCcceeee
Q 040332 225 EIADKLGLKFHEESEPGREEKKILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDV------LSRKMDSQQNFAV 298 (1210)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v------~~~~~~~~~~~~l 298 (1210)
.+..... ..++.+|++| ...+....+...+. ....++|.||..... ..........+.+
T Consensus 258 ~~~~~~~-----------~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v 322 (758)
T 3pxi_A 258 KVMDEIR-----------QAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (758)
T ss_dssp HHHHHHH-----------TCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred HHHHHHH-----------hcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEe
Confidence 2222221 3456788999 22222222333332 224566666654431 1111112246899
Q ss_pred cCCCHHHHHHHHHHHhC
Q 040332 299 GILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 299 ~~L~~~~~~~lf~~~~~ 315 (1210)
+..+.++..+++.....
T Consensus 323 ~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 323 DQPSVDESIQILQGLRD 339 (758)
T ss_dssp CCCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987654
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.23 E-value=0.0021 Score=68.51 Aligned_cols=174 Identities=13% Similarity=0.140 Sum_probs=91.5
Q ss_pred cCcccccccHHHHHHHHHHh---CC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC
Q 040332 151 KDYEAFESRMPTLRSILSAL---ED---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD 218 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 218 (1210)
....+++|.+..++++...+ .. ...+-+.|+|++|+||||+|+.+++..... | +.+..+.-..
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~---~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--E---EEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--E---EEEeHHHHHH
Confidence 35667889888777665443 21 123468899999999999999999876421 2 3333222110
Q ss_pred -----HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc----------------chhhhcccCC--CCCCCeE
Q 040332 219 -----IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL----------------DLRVVGIPHG--DDHRGCK 275 (1210)
Q Consensus 219 -----~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~----------------~~~~~~~~~~--~~~~gs~ 275 (1210)
...-.+.+.+... .....++++|+++... ....+...+. ....+..
T Consensus 84 ~~~~~~~~~~~~~~~~a~-----------~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 152 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAK-----------KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 152 (257)
T ss_dssp SCCCCCHHHHHHHHHHHH-----------TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEE
T ss_pred HhhhhhHHHHHHHHHHHH-----------HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEE
Confidence 1112222222211 3345789999984210 0111111111 1233556
Q ss_pred EEEeeCchhhhhh-cC--C-CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCC-cchHHH
Q 040332 276 ILLTARSLDVLSR-KM--D-SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAG-LPVSIV 342 (1210)
Q Consensus 276 iivTtR~~~v~~~-~~--~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~ 342 (1210)
||.||........ .. + -...+.++..+.++-.+++..+.......++. ....++....| .+--+.
T Consensus 153 vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHH
T ss_pred EEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHH
Confidence 7777766442211 11 1 12467788888888888887776432211111 12345666666 443333
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=6.7e-05 Score=79.30 Aligned_cols=78 Identities=28% Similarity=0.258 Sum_probs=39.6
Q ss_pred hcCCcceEEEecCcccccC---CccccCCCCCcEEEecCccCCCCCCCCCCC--CCcEEEeecCCCcc-cC-------cc
Q 040332 547 ERMIQVRVINLSYVDLLSL---PSSLVLLSNLRTLSLYYCKLLDISGIGDLK--KLEFLCLRGCDIRQ-LP-------IE 613 (1210)
Q Consensus 547 ~~l~~Lr~L~l~~~~~~~l---p~~i~~l~~L~~L~L~~~~~~~~~~i~~L~--~L~~L~l~~~~l~~-lp-------~~ 613 (1210)
.+++.|+.|+|++|.+..+ |..+..+++|++|+|++|.+.....+..+. +|++|++++|.+.. +| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3455566666666655543 234445556666666666555533333333 55666666555542 22 12
Q ss_pred cCCCCCCCEEe
Q 040332 614 VGELICLKLLD 624 (1210)
Q Consensus 614 i~~l~~L~~L~ 624 (1210)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34555555554
No 215
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0013 Score=74.32 Aligned_cols=170 Identities=13% Similarity=0.164 Sum_probs=100.2
Q ss_pred cccCcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 149 SSKDYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
|.....++.|-++.+++|...+. . ...+-|-++|++|.|||.+|+++++..... .+.+..+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhh
Confidence 34456778899998888876542 1 236789999999999999999999987642 23333332
Q ss_pred Cc-----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc-------c-----c----hhhhcccCC--CCCC
Q 040332 216 SQ-----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN-------L-----D----LRVVGIPHG--DDHR 272 (1210)
Q Consensus 216 ~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~-------~-----~----~~~~~~~~~--~~~~ 272 (1210)
-. .....++.+..... .....+|++|+++.. . . ...+...+. ....
T Consensus 251 l~~~~vGese~~ir~lF~~A~-----------~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAK-----------EKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHH-----------HHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred hhhcccchHHHHHHHHHHHHH-----------hcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 11 12334444433221 345789999998632 0 0 111222222 1223
Q ss_pred CeEEEEeeCchhhhhhcC---C-CcceeeecCCCHHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHhCCcc
Q 040332 273 GCKILLTARSLDVLSRKM---D-SQQNFAVGILKEVEAWSLFKKMAGDYI--EGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 273 gs~iivTtR~~~v~~~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 338 (1210)
+..||.||.......... + -...+.++..+.++-.++|+.+..... ..-. ...|++.+.|.-
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 556777887655432222 1 124678888888888888877664211 1222 246677777643
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.15 E-value=0.00014 Score=74.64 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=58.8
Q ss_pred HHHHHHHHhCCC----CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccC
Q 040332 162 TLRSILSALEDP----DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEE 237 (1210)
Q Consensus 162 ~~~~l~~~l~~~----~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 237 (1210)
.++.+.+++... ..+.+.|+|.+|+||||||+.+++....+ ...++|++++ ++...+........ .
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~--~ 106 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQDQT--M 106 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC---CC--C
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhccch--H
Confidence 445555555422 12789999999999999999999987643 3456666543 33333333221100 0
Q ss_pred Cc-ccccCccEEEEEeCCCCc--cchhh--hcc-cCCCC-CCCeEEEEeeCc
Q 040332 238 SE-PGREEKKILVILDNIWEN--LDLRV--VGI-PHGDD-HRGCKILLTARS 282 (1210)
Q Consensus 238 ~~-~~~~~kr~LlvlDdv~~~--~~~~~--~~~-~~~~~-~~gs~iivTtR~ 282 (1210)
.. ...-.+.-+|||||++.. ..|.. +.. .+... ..+.++|+||..
T Consensus 107 ~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 107 NEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 00 000011238999999653 33422 211 11111 235578888874
No 217
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.15 E-value=0.0083 Score=68.51 Aligned_cols=150 Identities=11% Similarity=0.166 Sum_probs=100.8
Q ss_pred cCCCC-chhHHHhhhcCCCCcccccchhhhcCCcceEEEecCcc---cccCC-ccccCCCCCcEEEecCccCCC--CCCC
Q 040332 519 LVECP-QLKLFLIHADKESPSLSIANNFFERMIQVRVINLSYVD---LLSLP-SSLVLLSNLRTLSLYYCKLLD--ISGI 591 (1210)
Q Consensus 519 ~~~~~-~Lr~L~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i 591 (1210)
+.+++ .|+++.+- .....+....|.++..|+.+.+..+. ++.+. .+|..+.+|+.+.+..+ +.. ...|
T Consensus 59 F~~~~~~L~sI~iP----~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 59 FCNYKYVLTSVQIP----DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTCCSCCCEEEEC----TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred ccCCCCcCEEEEEC----CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 44553 46655221 12345777889999999999998764 45553 45778888888777654 333 4568
Q ss_pred CCCCCCcEEEeecCCCcccCc-ccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCCccccccccccCcccc
Q 040332 592 GDLKKLEFLCLRGCDIRQLPI-EVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASL 670 (1210)
Q Consensus 592 ~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l 670 (1210)
..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.. .+..+....+. -.+|+.+.+..+.. ......+
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~-~~~l~~i~ip~~~~--------~i~~~af 201 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT-GTALTQIHIPAKVT--------RIGTNAF 201 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-TCCCSEEEECTTCC--------EECTTTT
T ss_pred hhhcccccccccce-eeeecccceecccccccccccc--eeeEecccccc-ccceeEEEECCccc--------ccccchh
Confidence 88999999999754 455543 567889999999876 46777777654 46788888864321 2344566
Q ss_pred ccCCCCCEEEeeccC
Q 040332 671 NELKHLTSLQLRIKD 685 (1210)
Q Consensus 671 ~~L~~L~~L~l~~~~ 685 (1210)
.++.++.........
T Consensus 202 ~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 202 SECFALSTITSDSES 216 (394)
T ss_dssp TTCTTCCEEEECCSS
T ss_pred hhccccceecccccc
Confidence 677777777655443
No 218
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.07 E-value=0.00013 Score=73.34 Aligned_cols=117 Identities=12% Similarity=0.032 Sum_probs=86.4
Q ss_pred CccccCCCCCcEEEecCc-cCCC------CCCCCCCCCCcEEEeecCCCc-----ccCcccCCCCCCCEEecCCCCCCCc
Q 040332 566 PSSLVLLSNLRTLSLYYC-KLLD------ISGIGDLKKLEFLCLRGCDIR-----QLPIEVGELICLKLLDLRDCSKLEV 633 (1210)
Q Consensus 566 p~~i~~l~~L~~L~L~~~-~~~~------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~ 633 (1210)
...+...++|++|+|++| .+.. ...+...++|++|+|++|.+. .+...+...++|++|++++| .++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 345677899999999999 8765 244667889999999999886 35556667789999999998 5654
Q ss_pred -----cChhhhcCCCcccEEEc--cCCCCccccccccccCccccccCCCCCEEEeeccCCC
Q 040332 634 -----IPPHILSNLSHLEELNI--GDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKDIN 687 (1210)
Q Consensus 634 -----~p~~~l~~L~~L~~L~l--~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 687 (1210)
+... +...++|++|++ .+|.+.... .......+...++|+.|++++|.+.
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g---~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNV---EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHH---HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHH---HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333 577789999999 778763211 1123455666789999999988754
No 219
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.05 E-value=0.011 Score=65.59 Aligned_cols=174 Identities=17% Similarity=0.135 Sum_probs=95.5
Q ss_pred cCcccccccHHHHHHHHHHhCC-----CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHH
Q 040332 151 KDYEAFESRMPTLRSILSALED-----PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGE 225 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 225 (1210)
.....++|++..++.+-..+.. .....+.++|++|+||||||+.+++..... |. ....+-.....++ ..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~---~~sg~~~~~~~~l-~~ 95 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH---VTSGPVLVKQGDM-AA 95 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE---EEETTTCCSHHHH-HH
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE---EEechHhcCHHHH-HH
Confidence 3556778988877776655542 234679999999999999999999987532 21 1111111122222 22
Q ss_pred HHHHhCCCcccCCcccccCccEEEEEeCCCCcc--chhhhcccCCCC--------C----------CCeEEE-EeeCchh
Q 040332 226 IADKLGLKFHEESEPGREEKKILVILDNIWENL--DLRVVGIPHGDD--------H----------RGCKIL-LTARSLD 284 (1210)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~~~~~~~~~~~~--------~----------~gs~ii-vTtR~~~ 284 (1210)
+...+ .++-++++|++.... ..+.+...+... + ....++ .|++...
T Consensus 96 ~~~~~-------------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~ 162 (334)
T 1in4_A 96 ILTSL-------------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGL 162 (334)
T ss_dssp HHHHC-------------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGG
T ss_pred HHHHc-------------cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCccc
Confidence 22221 123467788876431 222221111000 0 011222 3444333
Q ss_pred hhhhcC-CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcchHHHHH
Q 040332 285 VLSRKM-DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 285 v~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
+..... -....+.+++.+.++-.+++.+.+..... .--.+.+..|+++++|.|-.+..+
T Consensus 163 Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 163 LSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred CCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHH
Confidence 221101 11235789999999999999887642111 122456889999999999654433
No 220
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.99 E-value=0.0001 Score=70.46 Aligned_cols=46 Identities=9% Similarity=-0.009 Sum_probs=33.1
Q ss_pred ccccccHHHHHHHHHHhCC--CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 154 EAFESRMPTLRSILSALED--PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~--~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..++|++..+.++.+.+.. ....-|-|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3567888888888777651 233457799999999999999998754
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.91 E-value=0.011 Score=67.89 Aligned_cols=169 Identities=15% Similarity=0.180 Sum_probs=94.6
Q ss_pred CcccccccHHHHHHHHHHhC---CC---------CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-
Q 040332 152 DYEAFESRMPTLRSILSALE---DP---------DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD- 218 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~- 218 (1210)
...+++|.++.++++.+.+. .. -.+-|.|+|++|+||||||+.+++..... | +.++.+.-..
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~--f---~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP--F---FHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--E---EEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--e---eeCCHHHHHHH
Confidence 45678898887766655432 21 13458899999999999999999976532 2 3344332211
Q ss_pred ----HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc----------------chhhhcccCC--CCCCCeEE
Q 040332 219 ----IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL----------------DLRVVGIPHG--DDHRGCKI 276 (1210)
Q Consensus 219 ----~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~----------------~~~~~~~~~~--~~~~gs~i 276 (1210)
...-.+.+..+.. .....+|++|+++... ....+...+. ....+..|
T Consensus 89 ~~g~~~~~~r~lf~~A~-----------~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viV 157 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAK-----------AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV 157 (476)
T ss_dssp CTTHHHHHHHHHHHHHH-----------HTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEE
T ss_pred HhcccHHHHHHHHHHHH-----------hcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEE
Confidence 0111222222211 3456899999985420 1122221111 11246677
Q ss_pred EEeeCchhhhhhc-C--CC-cceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 277 LLTARSLDVLSRK-M--DS-QQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 277 ivTtR~~~v~~~~-~--~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
|.||......... . +. ...+.++..+.++-.+++..++......++. ....|++.+.|..
T Consensus 158 IaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 158 MAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred EEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 7788776543211 1 11 2367888888888888888777532211111 1234777888876
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.85 E-value=0.0016 Score=71.78 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=42.2
Q ss_pred cccccHHHHHHHHHHhCCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 155 AFESRMPTLRSILSALEDP---------DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~~---------~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
.++|.+..++.+...+... ....+.++|.+|+||||+|+.+++..... -...+.+.++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccc
Confidence 4678888888887776521 13589999999999999999999976422 12345555543
No 223
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0073 Score=68.22 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=94.5
Q ss_pred ccCcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 150 SKDYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
.....++.|-++.+++|...+. . ...+-|-++|++|+|||++|+++++..... .+.|..+.-
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l 242 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEF 242 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGT
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchh
Confidence 3456778898988888776553 1 235679999999999999999999987632 233444332
Q ss_pred c-----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--------c----c----hhhhcccCC--CCCCC
Q 040332 217 Q-----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--------L----D----LRVVGIPHG--DDHRG 273 (1210)
Q Consensus 217 ~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--------~----~----~~~~~~~~~--~~~~g 273 (1210)
. .....++++..... .....+|++|+++.. . . ...+...+. ....|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~-----------~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLAR-----------ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHH-----------HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred hccccchhHHHHHHHHHHHH-----------HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 1 12333444443321 345789999998521 0 0 111211111 23346
Q ss_pred eEEEEeeCchhhhhh---cCCC-cceeeecCCC-HHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHhCCcc
Q 040332 274 CKILLTARSLDVLSR---KMDS-QQNFAVGILK-EVEAWSLFKKMAGDYI--EGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 274 s~iivTtR~~~v~~~---~~~~-~~~~~l~~L~-~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 338 (1210)
..||.||........ ..+. ...+.+..+. .++-.++|..+..... ...++ ..|++.+.|.-
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 677788876543221 1122 2356776554 4555556666553221 12223 46677777653
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.79 E-value=0.0056 Score=67.36 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=82.7
Q ss_pred ccccccHHHHHHHHHHhCC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCc--
Q 040332 154 EAFESRMPTLRSILSALED--------------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQ-- 217 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-- 217 (1210)
..++|++..++.+...+.. .....+.++|.+|+|||++|+.+++.... ..+.+..+...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-----~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEcchhcccC
Confidence 3578999998888776643 23457889999999999999999987742 23344443321
Q ss_pred -----CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--c------------hhhhcccCCC---------
Q 040332 218 -----DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--D------------LRVVGIPHGD--------- 269 (1210)
Q Consensus 218 -----~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--~------------~~~~~~~~~~--------- 269 (1210)
+....+.++...... .....+++.+|++|+++... . ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~ 163 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG------AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 163 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT------CHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEE
T ss_pred CccCccHHHHHHHHHHHhhH------HHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEeccccc
Confidence 112333343332100 00002346799999997542 1 2222211111
Q ss_pred -CCCCeEEEEeeC----chh-hhhhcCCC-cceeeecCCCHHHHHHHHHHH
Q 040332 270 -DHRGCKILLTAR----SLD-VLSRKMDS-QQNFAVGILKEVEAWSLFKKM 313 (1210)
Q Consensus 270 -~~~gs~iivTtR----~~~-v~~~~~~~-~~~~~l~~L~~~~~~~lf~~~ 313 (1210)
...+..+|.|+. ... +....... ...+.+++++.++..+++.++
T Consensus 164 ~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 164 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp EECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSS
T ss_pred ccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhh
Confidence 112445666642 111 11100111 146899999999988888753
No 225
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.75 E-value=0.013 Score=68.19 Aligned_cols=175 Identities=11% Similarity=0.143 Sum_probs=97.8
Q ss_pred CcccccccHHHHHHHHHHhC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC---
Q 040332 152 DYEAFESRMPTLRSILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ--- 215 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--- 215 (1210)
....++|.+..++++.+++. ....+-|.|+|.+|+|||++|+.+++.... ..+.+..+.
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~l~~ 276 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMS 276 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHHHHT
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchHhhh
Confidence 34568899999988887764 234567899999999999999999887531 223343221
Q ss_pred -CcC-HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--------c-----chhhhcccCC--CCCCCeEEEE
Q 040332 216 -SQD-IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--------L-----DLRVVGIPHG--DDHRGCKILL 278 (1210)
Q Consensus 216 -~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--------~-----~~~~~~~~~~--~~~~gs~iiv 278 (1210)
... ...-++.+..... .++..+|+||+++.. . ....+...+. ....+..||.
T Consensus 277 ~~~g~~~~~~~~~f~~A~-----------~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIa 345 (489)
T 3hu3_A 277 KLAGESESNLRKAFEEAE-----------KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (489)
T ss_dssp SCTTHHHHHHHHHHHHHH-----------HTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred hhcchhHHHHHHHHHHHH-----------hcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEE
Confidence 111 1111222222211 455679999998421 0 0111211111 1223556776
Q ss_pred eeCchhhhhhcC----CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCc-chHHHHH
Q 040332 279 TARSLDVLSRKM----DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGL-PVSIVTV 344 (1210)
Q Consensus 279 TtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~ 344 (1210)
||.......... .-...+.+...+.++-.+++..++........ ....++++.+.|. +-.+..+
T Consensus 346 aTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred ecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 777643211111 11236889999999999999988753321111 0124566677664 4334433
No 226
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.73 E-value=0.0019 Score=69.42 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=35.2
Q ss_pred CcccccccHHHHHHHHHHhC---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 152 DYEAFESRMPTLRSILSALE---D---------PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++...
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34567787776666655442 1 1234478999999999999999999865
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.63 E-value=0.0014 Score=70.18 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=34.1
Q ss_pred cccccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 153 YEAFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...++|++..+.++.+.+. ......|.|+|.+|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4567899988888776654 22335678999999999999999998653
No 228
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.53 E-value=0.0053 Score=66.92 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=36.6
Q ss_pred cccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 155 AFESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.++|+...+.++.+.+. ......|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 57899988888887765 2334567799999999999999999865
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.50 E-value=0.0018 Score=62.07 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
....+.|+|..|+|||||++.+++..... .+ .++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 55789999999999999999999987542 12 256665543
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.47 E-value=0.043 Score=58.02 Aligned_cols=170 Identities=13% Similarity=0.102 Sum_probs=87.8
Q ss_pred cCcccccccHHHHHHHHHHhC---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC---
Q 040332 151 KDYEAFESRMPTLRSILSALE---D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ--- 215 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--- 215 (1210)
.....++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++..... ..+.+....
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~~~~~ 87 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVE 87 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHHHHHH
Confidence 345667788766655544322 1 11223899999999999999999987642 233333211
Q ss_pred -CcC-HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc------------cc----hhhhcccCCCC--CCCeE
Q 040332 216 -SQD-IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN------------LD----LRVVGIPHGDD--HRGCK 275 (1210)
Q Consensus 216 -~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~------------~~----~~~~~~~~~~~--~~gs~ 275 (1210)
... ...-...+.+... .....++++|+++.. .. ...+...+..+ ....-
T Consensus 88 ~~~~~~~~~i~~~~~~~~-----------~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i 156 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAK-----------RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 156 (254)
T ss_dssp SCTTHHHHHHHHHHHHHT-----------TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEE
T ss_pred HHhhHHHHHHHHHHHHHH-----------hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 000 0111122222221 223578999998421 11 11222222222 12334
Q ss_pred EEEeeCchhhhhhcC----CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 276 ILLTARSLDVLSRKM----DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 276 iivTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
++.||....+..... .-...+.++..+.++-.+++...+.+....++. ....|++.+.|.-
T Consensus 157 ~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 157 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred EEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 555666655542211 123467888899888888887776432111110 1235666666643
No 231
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.30 E-value=0.043 Score=58.57 Aligned_cols=148 Identities=11% Similarity=0.155 Sum_probs=80.4
Q ss_pred CcccccccHHHHHHHHHHhC----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC
Q 040332 152 DYEAFESRMPTLRSILSALE----D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD 218 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 218 (1210)
...++.|-++.++++...+. . .-.+-+.++|++|+||||||+.++..... ..+++..+.-.+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 34566677777777665432 1 11123999999999999999999987643 244554332211
Q ss_pred --HHH---HHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc---------c----hhhhcccCCC--CCCCeEEEE
Q 040332 219 --IRK---IQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL---------D----LRVVGIPHGD--DHRGCKILL 278 (1210)
Q Consensus 219 --~~~---~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~---------~----~~~~~~~~~~--~~~gs~iiv 278 (1210)
..+ -+..+.+... .....++++|+++... . ...+...+.. .....-++.
T Consensus 83 ~~~~~~~~~i~~vf~~a~-----------~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia 151 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAK-----------NSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMA 151 (274)
T ss_dssp STTHHHHHHHHHHHHHHH-----------HTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEE
T ss_pred hhhhHHHHHHHHHHHHHH-----------hcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEe
Confidence 111 1222222110 2345788999986421 0 0111111211 123445666
Q ss_pred eeCchhhhhhcC----CCcceeeecCCCHHHHHHHHHHHhC
Q 040332 279 TARSLDVLSRKM----DSQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 279 TtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
+|....+..... --...+.++..+.++-.++|+....
T Consensus 152 ~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred ecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 777766543211 1234678888898888888887763
No 232
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.21 E-value=0.011 Score=69.93 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=35.2
Q ss_pred ccccccHHHHHHHHHHhC------CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 154 EAFESRMPTLRSILSALE------DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..++|-+...+.+.+.+. .....++.++|++|+||||||+.++....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346677777666644332 23457899999999999999999998874
No 233
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.20 E-value=0.0044 Score=68.85 Aligned_cols=150 Identities=9% Similarity=0.125 Sum_probs=81.0
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 154 EAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
..++|+++.++.+...+..+ .-+.++|.+|+|||++|+.+++..... | ..+..+......++..... ..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~~--~---~~i~~~~~~~~~~l~g~~~----~~ 95 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDLD--F---HRIQFTPDLLPSDLIGTMI----YN 95 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTCC--E---EEEECCTTCCHHHHHEEEE----EE
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCCC--e---EEEecCCCCChhhcCCcee----ec
Confidence 46789999998888777643 368899999999999999999876421 2 2333333333333221110 00
Q ss_pred cccCCcccc-cC--ccEEEEEeCCCCcc--chhhhcccCC-----------CCCCCeEEEEeeCchh------hhhhcCC
Q 040332 234 FHEESEPGR-EE--KKILVILDNIWENL--DLRVVGIPHG-----------DDHRGCKILLTARSLD------VLSRKMD 291 (1210)
Q Consensus 234 ~~~~~~~~~-~~--kr~LlvlDdv~~~~--~~~~~~~~~~-----------~~~~gs~iivTtR~~~------v~~~~~~ 291 (1210)
........ .+ ..-++++|++.... ....+...+. .......|+.|+.... +......
T Consensus 96 -~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~ 174 (331)
T 2r44_A 96 -QHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD 174 (331)
T ss_dssp -TTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT
T ss_pred -CCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh
Confidence 00000000 11 12589999997542 1221111110 0122345555555221 1111111
Q ss_pred Ccc-eeeecCCCHHHHHHHHHHHhC
Q 040332 292 SQQ-NFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 292 ~~~-~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
... .+.+++.+.++-.+++.+.+.
T Consensus 175 Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 175 RFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred heeEEEEcCCCCHHHHHHHHHhccc
Confidence 222 478888999988888888765
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.05 E-value=0.087 Score=56.49 Aligned_cols=171 Identities=12% Similarity=0.082 Sum_probs=89.2
Q ss_pred ccCcccccccHHHHHHHHHHhC---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC--
Q 040332 150 SKDYEAFESRMPTLRSILSALE---D---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ-- 215 (1210)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-- 215 (1210)
......++|.++.++++.+... . .-.+-+.|+|+.|+||||||+.++..... ..+.+....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~~~~ 110 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFV 110 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHHHHH
Confidence 3446678888877666554332 1 01123899999999999999999987642 233343211
Q ss_pred -C-cC-HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc------------cch----hhhcccCCCCC--CCe
Q 040332 216 -S-QD-IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN------------LDL----RVVGIPHGDDH--RGC 274 (1210)
Q Consensus 216 -~-~~-~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~------------~~~----~~~~~~~~~~~--~gs 274 (1210)
. .. ...-+..+.+... .....++++|+++.. ..+ ..+...+..+. ...
T Consensus 111 ~~~~~~~~~~i~~~~~~~~-----------~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~ 179 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAK-----------RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 179 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHH-----------TSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCE
T ss_pred HHHhhHHHHHHHHHHHHHH-----------hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCE
Confidence 0 00 0111112222210 133578999998421 111 12222222222 223
Q ss_pred EEEEeeCchhhhhhc---C-CCcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 275 KILLTARSLDVLSRK---M-DSQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 275 ~iivTtR~~~v~~~~---~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
-++.||....+.... . --...+.++..+.++-.+++..++......++. ....+++.+.|..
T Consensus 180 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp EEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred EEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 455566665543211 1 123468888899988888888776432111111 1235667776654
No 235
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.97 E-value=0.0057 Score=65.46 Aligned_cols=64 Identities=20% Similarity=0.393 Sum_probs=43.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe--cCC-----cCHHHHHHHHHHHhCCCcccCCcccccCccE
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEV--SQS-----QDIRKIQGEIADKLGLKFHEESEPGREEKKI 247 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~ 247 (1210)
.+++.|+|++|+||||||.+++.... ..++|+++ .+. .+.+.++..+.+.+ ...+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l------------~~~~- 184 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSGYNTDFNVFVDDIARAM------------LQHR- 184 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH------------HHCS-
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhhhhcCHHHHHHHHHHHH------------hhCC-
Confidence 35778999999999999999998621 12456666 111 34566665555554 2334
Q ss_pred EEEEeCCCC
Q 040332 248 LVILDNIWE 256 (1210)
Q Consensus 248 LlvlDdv~~ 256 (1210)
+||+|++..
T Consensus 185 LLVIDsI~a 193 (331)
T 2vhj_A 185 VIVIDSLKN 193 (331)
T ss_dssp EEEEECCTT
T ss_pred EEEEecccc
Confidence 999999865
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.94 E-value=0.037 Score=67.58 Aligned_cols=168 Identities=11% Similarity=0.153 Sum_probs=95.2
Q ss_pred cccccccHHHHHHHHHHh----CC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEec----C
Q 040332 153 YEAFESRMPTLRSILSAL----ED---------PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVS----Q 215 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l----~~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~ 215 (1210)
..++.|-++.+++|.+.+ .. ...+-|-++|++|+|||+||+++++..... .+.|+.+ .
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~l~sk 277 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPEIMSK 277 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHHHHSS
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHHhhcc
Confidence 445667776666665543 21 235789999999999999999999876532 3344432 1
Q ss_pred Cc-CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc--------c-----hhhhcccCC--CCCCCeEEEEe
Q 040332 216 SQ-DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL--------D-----LRVVGIPHG--DDHRGCKILLT 279 (1210)
Q Consensus 216 ~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~--------~-----~~~~~~~~~--~~~~gs~iivT 279 (1210)
.. ..+..++++.+... .....+|++|+++... . ...+...+. ....+.-||.|
T Consensus 278 ~~gese~~lr~lF~~A~-----------~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaa 346 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAE-----------KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp CTTHHHHHHHHHHHHHT-----------TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEE
T ss_pred cchHHHHHHHHHHHHHH-----------HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEe
Confidence 11 12334445544432 4567899999986421 0 111111111 11234456667
Q ss_pred eCchhhhhhcCC----CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 280 ARSLDVLSRKMD----SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 280 tR~~~v~~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
|...+......- -...++++..+.++-.++|+.+........+. ....|++++.|.-
T Consensus 347 TN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp CSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCC
T ss_pred cCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCC
Confidence 765443222111 12468888899988888988776532211111 1346778887764
No 237
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.89 E-value=0.015 Score=72.57 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=78.2
Q ss_pred ccccccHHHHHHHHHHhCC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHH----
Q 040332 154 EAFESRMPTLRSILSALED-------P--DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIR---- 220 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---- 220 (1210)
..++|.+..++.+...+.. + ....+.++|++|+|||++|+.+++..... -...+.++++.-....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccccc
Confidence 4578999988888777751 1 12379999999999999999999986321 2334555554322110
Q ss_pred HHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc--cchhhhcccCCC-----------CCCCeEEEEeeCch----
Q 040332 221 KIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN--LDLRVVGIPHGD-----------DHRGCKILLTARSL---- 283 (1210)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~--~~~~~~~~~~~~-----------~~~gs~iivTtR~~---- 283 (1210)
..+...++ ....-+|+||+++.. +....+...+.. .....+||+||...
T Consensus 569 ~~l~~~~~--------------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~ 634 (758)
T 3pxi_A 569 GQLTEKVR--------------RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEK 634 (758)
T ss_dssp --CHHHHH--------------HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCC
T ss_pred chhhHHHH--------------hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhH
Confidence 00011111 222348899999754 222222211111 12356888888731
Q ss_pred -hh----h----hhcCCC-cceeeecCCCHHHHHHHHHHH
Q 040332 284 -DV----L----SRKMDS-QQNFAVGILKEVEAWSLFKKM 313 (1210)
Q Consensus 284 -~v----~----~~~~~~-~~~~~l~~L~~~~~~~lf~~~ 313 (1210)
.+ . ...... ...+.+.+++.++-.+++...
T Consensus 635 ~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 635 DKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp HHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 10 0 000111 246778888887766666544
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.66 E-value=0.054 Score=62.70 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=91.7
Q ss_pred cCcccccccHHHHHHHHHHhC---CC---------CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC
Q 040332 151 KDYEAFESRMPTLRSILSALE---DP---------DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD 218 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 218 (1210)
....+++|.++.+.++.+... .. -.+-+.|+|++|+||||||+.++..... ..+.++.+.-..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHH
Confidence 345678898887766654432 21 1234899999999999999999987642 234444332111
Q ss_pred --HHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCc------------cch----hhhcccCCCC--CCCeEEEE
Q 040332 219 --IRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWEN------------LDL----RVVGIPHGDD--HRGCKILL 278 (1210)
Q Consensus 219 --~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~------------~~~----~~~~~~~~~~--~~gs~iiv 278 (1210)
.......+...+... ......++++|+++.. +.+ ..+...+..+ ..+..|+.
T Consensus 103 ~~~g~~~~~v~~lfq~a--------~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 103 MFVGVGAARVRDLFETA--------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 174 (499)
T ss_dssp SCTTHHHHHHHHHTTTS--------SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEE
T ss_pred hhhhhHHHHHHHHHHHH--------HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEE
Confidence 111111121211100 0123468999998532 111 1222222211 23445666
Q ss_pred eeCchhhhhhcCC----CcceeeecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCcc
Q 040332 279 TARSLDVLSRKMD----SQQNFAVGILKEVEAWSLFKKMAGDYIEGSEFQLVAREVEKECAGLP 338 (1210)
Q Consensus 279 TtR~~~v~~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 338 (1210)
||....+.....- -...+.++..+.++-.+++..++......++. ....|++.+.|..
T Consensus 175 atn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 175 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred ecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 7776655322111 12467888889888888887776432111110 1234666666654
No 239
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.45 E-value=0.015 Score=63.30 Aligned_cols=52 Identities=25% Similarity=0.368 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCC---CCceEEEEEcCCCCcHHHHHHHHHHHhh-ccCCCCeEEEEEe
Q 040332 160 MPTLRSILSALED---PDVNMLGIYGMGGIGKTMLAEEVARKIK-SDKIFDQVVFAEV 213 (1210)
Q Consensus 160 ~~~~~~l~~~l~~---~~~~vi~i~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v 213 (1210)
...++.+.+++.. .....+.|+|.+|+|||+||..+++... .+ . ..++++++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g-~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-G-VSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-C-CCEEEEEH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEH
Confidence 3344455555542 1257889999999999999999999876 43 2 23455544
No 240
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.35 E-value=0.014 Score=63.15 Aligned_cols=27 Identities=41% Similarity=0.534 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+.+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999999875
No 241
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.33 E-value=0.056 Score=67.43 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=36.5
Q ss_pred ccccccHHHHHHHHHHhCC---------CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 154 EAFESRMPTLRSILSALED---------PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..++|.+..++.+...+.. .....+.++|.+|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3577999888887776641 123478999999999999999999877
No 242
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.22 E-value=0.14 Score=56.81 Aligned_cols=158 Identities=7% Similarity=-0.082 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHH-hCCCcccCCcccccCccEEEEE
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADK-LGLKFHEESEPGREEKKILVIL 251 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~kr~Llvl 251 (1210)
.-.++.-++|..|.||++.|..+.+..... .|+....+.+....++.++..++... + .+++-++|+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~pl------------f~~~kvvii 82 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQAMSL------------FASRQTLLL 82 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHHHHH------------CCSCEEEEE
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcCcCC------------ccCCeEEEE
Confidence 345789999999999999999998876432 35432223344556777766554321 2 345668888
Q ss_pred eCCCC---ccchhhhcccCCCCCCCeEEEEeeCc-------hhhhhhcCCCcceeeecCCCHHHHHHHHHHHhCCCCCCc
Q 040332 252 DNIWE---NLDLRVVGIPHGDDHRGCKILLTARS-------LDVLSRKMDSQQNFAVGILKEVEAWSLFKKMAGDYIEGS 321 (1210)
Q Consensus 252 Ddv~~---~~~~~~~~~~~~~~~~gs~iivTtR~-------~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 321 (1210)
|++.. ...++.+...+.....++.+|++|.. ..+..........++..+++.++..+.+.+.+....- .
T Consensus 83 ~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~-~ 161 (343)
T 1jr3_D 83 LLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL-E 161 (343)
T ss_dssp ECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTC-E
T ss_pred ECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCC-C
Confidence 99865 34555555444433456777766532 2343333445568999999999988888777632111 1
Q ss_pred hHHHHHHHHHHHhCCcchHHHHH
Q 040332 322 EFQLVAREVEKECAGLPVSIVTV 344 (1210)
Q Consensus 322 ~~~~~~~~i~~~c~glPlai~~~ 344 (1210)
--.+.+..+++.++|.+.++...
T Consensus 162 i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 162 LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred CCHHHHHHHHHHhchHHHHHHHH
Confidence 12345778888899888776654
No 243
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.01 E-value=0.018 Score=66.84 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=37.4
Q ss_pred cccccccHHHHHHHHHH---hCCC--CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 153 YEAFESRMPTLRSILSA---LEDP--DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 153 ~~~~~gr~~~~~~l~~~---l~~~--~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...++|.++.++.+..+ +..+ ..+-+-++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46788999887765443 3333 235788999999999999999999875
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.62 E-value=0.074 Score=66.15 Aligned_cols=148 Identities=11% Similarity=0.155 Sum_probs=82.2
Q ss_pred CcccccccHHHHHHHHHHhC-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC--
Q 040332 152 DYEAFESRMPTLRSILSALE-------------DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS-- 216 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-- 216 (1210)
....++|.+..++++.+++. -.....|.|+|.+|+||||||+.++...... | +.+..+.-
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~---i~v~~~~l~~ 276 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--F---FLINGPEIMS 276 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--E---EEEEHHHHSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--E---EEEEchHhhh
Confidence 34567888888877776653 1234679999999999999999998865421 2 33432211
Q ss_pred --c-CHHHHHHHHHHHhCCCcccCCcccccCccEEEEEeCCCCcc-------------chhhhcccCC--CCCCCeEEEE
Q 040332 217 --Q-DIRKIQGEIADKLGLKFHEESEPGREEKKILVILDNIWENL-------------DLRVVGIPHG--DDHRGCKILL 278 (1210)
Q Consensus 217 --~-~~~~~~~~i~~~l~~~~~~~~~~~~~~kr~LlvlDdv~~~~-------------~~~~~~~~~~--~~~~gs~iiv 278 (1210)
. ....-+..+..... .....++++|++.... ....+...+. ....+..||.
T Consensus 277 ~~~g~~~~~l~~vf~~a~-----------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~ 345 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAE-----------KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp SSTTHHHHHHHHHHHHHH-----------HHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEE
T ss_pred hhhhhHHHHHHHHHHHHH-----------hcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEec
Confidence 1 11222222222211 2346789999984221 0011111111 1113445666
Q ss_pred eeCchhhhhhcCC----CcceeeecCCCHHHHHHHHHHHhC
Q 040332 279 TARSLDVLSRKMD----SQQNFAVGILKEVEAWSLFKKMAG 315 (1210)
Q Consensus 279 TtR~~~v~~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~ 315 (1210)
||....-...... -...+.+...+.++-.+++...+.
T Consensus 346 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp ECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred ccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 6665432211111 123577888889998899887765
No 245
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.55 E-value=0.086 Score=57.60 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=35.7
Q ss_pred HHHHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEEEEecCCc
Q 040332 164 RSILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD-KIFDQVVFAEVSQSQ 217 (1210)
Q Consensus 164 ~~l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~ 217 (1210)
-++++.+. -.....++|+|..|+|||||++.+.+..... ..+++ +++-+.+..
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 34555554 3455799999999999999999998765432 12333 356666553
No 246
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.53 E-value=0.032 Score=56.54 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHhCC---CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 158 SRMPTLRSILSALED---PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 158 gr~~~~~~l~~~l~~---~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|++.++++.+.+.. ....+|+|.|..|+||||+++.+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356667777777653 4567999999999999999999998664
No 247
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.49 E-value=0.11 Score=54.17 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.2
Q ss_pred HHHHHHHhCC--CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 163 LRSILSALED--PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 163 ~~~l~~~l~~--~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+..|+.. +....|.++|++|.|||++|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4456667763 335679999999999999999999864
No 248
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.27 E-value=0.086 Score=58.01 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=38.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
..++.|+|.+|+||||||.+++...... =..++|++....++.. .+++++..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~ 112 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVD 112 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCc
Confidence 4799999999999999999999876532 2347888877666643 45556554
No 249
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.17 E-value=0.039 Score=59.91 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
++.+||+|.|-|||||||.|..+..-...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 46799999999999999999988876653
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.11 E-value=0.051 Score=55.36 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCC--CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 161 PTLRSILSALED--PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 161 ~~~~~l~~~l~~--~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+.+++|.+.+.. ....+|+|+|..|.|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456667776653 4568999999999999999999998765
No 251
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.09 E-value=0.042 Score=69.29 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=37.3
Q ss_pred ccccccHHHHHHHHHHhCC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 154 EAFESRMPTLRSILSALED-------P--DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..++|.+..++.+...+.. + ....+.|+|..|+|||++|+.+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999988888776641 1 125889999999999999999998763
No 252
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.72 E-value=0.087 Score=48.70 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=42.7
Q ss_pred EEEeecCCCc--ccCcccCCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccCCCC
Q 040332 599 FLCLRGCDIR--QLPIEVGELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGDNSF 655 (1210)
Q Consensus 599 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~n~~ 655 (1210)
.++-+++.++ .+|..+. .+|++|+|++| .+..+|.+.+..+++|++|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 5667777777 7776543 36888899888 78888888888888899999988876
No 253
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.64 E-value=0.16 Score=54.02 Aligned_cols=53 Identities=9% Similarity=-0.012 Sum_probs=39.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCc
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKF 234 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 234 (1210)
++-|.|.+|+||||||.+++.....+..=..++||+....++.. .+++++.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~ 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDP 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCH
Confidence 68999999999999999998876532112458899888777753 367776643
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.42 E-value=0.043 Score=54.27 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 255
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.35 E-value=0.044 Score=53.87 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 256
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.34 E-value=0.08 Score=57.60 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHhC----CCCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 158 SRMPTLRSILSALE----DPDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 158 gr~~~~~~l~~~l~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
+-+...+++++.+. .+....|.|+|+.|+||||+++.++.....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34455565655553 455677999999999999999999987653
No 257
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.29 E-value=0.46 Score=65.97 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCCcccCCc--cc-ccCccEEEEEe
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLKFHEESE--PG-REEKKILVILD 252 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~--~~-~~~kr~LlvlD 252 (1210)
+-|-++|++|+|||++|+.+..... .+ ..+.+..+...+...+++.+...+......... .. ..+|+.++.+|
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiD 1343 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCD 1343 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEec
Confidence 5778999999999999988776432 12 345677777777777777776655432111110 01 15788999999
Q ss_pred CCC
Q 040332 253 NIW 255 (1210)
Q Consensus 253 dv~ 255 (1210)
|+.
T Consensus 1344 Ein 1346 (2695)
T 4akg_A 1344 EIN 1346 (2695)
T ss_dssp TTT
T ss_pred ccc
Confidence 964
No 258
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.24 E-value=0.052 Score=54.89 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+|.|+|+.|+||||+|+.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.19 E-value=0.048 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.+|.|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 443
No 260
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.15 E-value=0.048 Score=60.94 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=37.4
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.....++|.+..+..+..........-+-|+|.+|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34567889988766654444333344589999999999999999998764
No 261
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.03 E-value=0.07 Score=55.18 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=29.6
Q ss_pred HHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 163 LRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 163 ~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+.+...+......+|.|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44444444455678999999999999999999998754
No 262
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.95 E-value=0.4 Score=54.10 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=45.1
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-HHHHHHHHHHH
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-IRKIQGEIADK 229 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~ 229 (1210)
.++.+. =.+...++|+|..|+|||+|++++.+.... .+-+.++++-+.+... ..++.+++.+.
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 455554 244578999999999999999999988642 2356788888887653 35566666554
No 263
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.90 E-value=0.17 Score=55.96 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHHhCCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADKLGLK 233 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (1210)
..+++.|+|.+|+||||||.+++...... =..++|++....++.. .++.++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~ 112 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVD 112 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCC
Confidence 34799999999999999999999776533 2457899887766543 24555543
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.89 E-value=0.059 Score=53.99 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
...+++|+|+.|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4478999999999999999999864
No 265
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.86 E-value=0.059 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 266
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.79 E-value=0.37 Score=54.59 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=45.5
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-HHHHHHHHHHH
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-IRKIQGEIADK 229 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~ 229 (1210)
.++.|. =.+...++|.|..|+|||+|++++.+.... .+-+.++++-+.+... ..++.+++.+.
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 444444 345578999999999999999999998643 2457888988887654 45566666543
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.78 E-value=0.061 Score=53.27 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 040332 176 NMLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 268
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.70 E-value=0.53 Score=52.95 Aligned_cols=102 Identities=11% Similarity=0.188 Sum_probs=46.8
Q ss_pred hhcCCcceEEEecCcccccC-CccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-ccCCCCCCC
Q 040332 546 FERMIQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EVGELICLK 621 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~ 621 (1210)
|.....|+.+.+..+ +..+ ...+..+.+|+.+.+..+ +.. ...+.++.+|+.+.+.. .+..++. .+..+++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 344444444444332 1211 223444555555555433 222 23344555555555533 2344432 344555555
Q ss_pred EEecCCCCCCCccChhhhcCCCcccEEEcc
Q 040332 622 LLDLRDCSKLEVIPPHILSNLSHLEELNIG 651 (1210)
Q Consensus 622 ~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~ 651 (1210)
.+.+.++ .+..++...+.++.+|+.+.+.
T Consensus 290 ~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 290 KVVMDNS-AIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccc-ccceehhhhhcCCCCCCEEEcC
Confidence 5555443 4455555555555555555554
No 269
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.67 E-value=0.33 Score=54.72 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=87.8
Q ss_pred ccccchhhhcCCcceEEEecCcccccC-CccccCCCCCcEEEecCccCCC--CCCCCCCCCCcEEEeecCCCcccCc-cc
Q 040332 539 LSIANNFFERMIQVRVINLSYVDLLSL-PSSLVLLSNLRTLSLYYCKLLD--ISGIGDLKKLEFLCLRGCDIRQLPI-EV 614 (1210)
Q Consensus 539 ~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i 614 (1210)
..+....|..+..|+.+.+..+ +..+ ...+.++.+|+.+.+..+ +.. ...|.++.+|+.+.+.++.++.++. .+
T Consensus 229 ~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF 306 (379)
T 4h09_A 229 TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF 306 (379)
T ss_dssp CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTT
T ss_pred eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhh
Confidence 3456677888999999999765 5555 345778889999998754 443 4568899999999999888988865 67
Q ss_pred CCCCCCCEEecCCCCCCCccChhhhcCCCcccEEEccC
Q 040332 615 GELICLKLLDLRDCSKLEVIPPHILSNLSHLEELNIGD 652 (1210)
Q Consensus 615 ~~l~~L~~L~l~~~~~~~~~p~~~l~~L~~L~~L~l~~ 652 (1210)
.++.+|+.+.+.. .++.+....+.++++|+.+.+..
T Consensus 307 ~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 307 MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 8999999999975 47888888889999999988763
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.62 E-value=0.071 Score=53.88 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998876
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.57 E-value=0.059 Score=52.98 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998754
No 272
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.56 E-value=0.069 Score=52.90 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998653
No 273
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.56 E-value=0.034 Score=55.19 Aligned_cols=26 Identities=23% Similarity=0.002 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
.++.|+|..|+||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999877776643
No 274
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.55 E-value=0.074 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|.|.|++|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998875
No 275
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.55 E-value=0.078 Score=54.60 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 160 MPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 160 ~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
++..+.+.+.+...+.++|+|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34445555555455678999999999999999999988764
No 276
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.53 E-value=0.08 Score=53.51 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=25.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.....+|+|+|+.|.||||+|+.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35568999999999999999999998875
No 277
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.46 E-value=0.14 Score=54.78 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=34.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccC-CCCeEEEEEecCCcCHHHHHHHH
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDK-IFDQVVFAEVSQSQDIRKIQGEI 226 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i 226 (1210)
....+|+|+|..|+||||||+.+........ ....+..|+...-.-.......+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 4567999999999999999999988765321 02334444444333333444444
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.43 E-value=0.083 Score=52.99 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 279
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.38 E-value=0.15 Score=54.74 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+++++|.+|+||||++..++.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987753
No 280
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.37 E-value=0.19 Score=56.94 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC-HHHHHHHH
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD-IRKIQGEI 226 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 226 (1210)
..++|+|..|+|||||++.+......+ +-+.++++-+.+..+ ..++..++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHh
Confidence 468999999999999999999876643 224566777776543 33444434
No 281
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.31 E-value=0.12 Score=57.83 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=36.8
Q ss_pred cccccHHHHHHHHHHhC-------------C--CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 155 AFESRMPTLRSILSALE-------------D--PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~-------------~--~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.++|.+..++.+...+. . ...+.|.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799888888877772 1 1346789999999999999999998874
No 282
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.30 E-value=0.032 Score=60.77 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=35.2
Q ss_pred HHHHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEEEEecCC
Q 040332 164 RSILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD-KIFDQVVFAEVSQS 216 (1210)
Q Consensus 164 ~~l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 216 (1210)
-++++.+. -.....++|+|.+|+|||+|++++.+..... ..+.+ +++-+.+.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 35666665 3456789999999999999999999875432 11333 45555543
No 283
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.30 E-value=0.17 Score=46.75 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=28.4
Q ss_pred EEEecCcccc--cCCccccCCCCCcEEEecCccCCC-C-CCCCCCCCCcEEEeecCC
Q 040332 554 VINLSYVDLL--SLPSSLVLLSNLRTLSLYYCKLLD-I-SGIGDLKKLEFLCLRGCD 606 (1210)
Q Consensus 554 ~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~ 606 (1210)
+++.+++.++ .+|..+. .+|++|+|++|.+.. + ..|..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5667777766 6765432 246666666665555 2 224455555555555553
No 284
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.28 E-value=0.2 Score=55.28 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=35.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIR 220 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (1210)
..+++.|.|.+|+||||||.+++...... =..++|++....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH
Confidence 34699999999999999999999876533 2368899887776643
No 285
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.26 E-value=0.08 Score=52.99 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998765
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.25 E-value=0.064 Score=54.34 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|.|.|+.|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 287
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.15 E-value=0.11 Score=51.87 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
....+|.|.|++|+||||+|+.++.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999999999988754
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.13 E-value=0.075 Score=52.64 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.++|.|+|++|+||||+|+.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 289
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.11 E-value=0.089 Score=51.38 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998765
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.11 E-value=0.094 Score=50.69 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
..++++|+|..|+|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3579999999999999999999988653
No 291
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.10 E-value=0.26 Score=54.54 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHH
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIR 220 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (1210)
.+++.|.|.+|+||||||.+++...... -..++|++....++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV 117 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH
Confidence 4688999999999999999998876533 2468899887766543
No 292
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.08 E-value=0.067 Score=62.01 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=37.0
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 154 EAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..++|+++.++.+...+..+ .-|-++|.+|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 35779999988888776543 4688999999999999999998664
No 293
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.04 E-value=0.1 Score=53.02 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+.++|.|.|++|+||||.|+.+..+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4568999999999999999999998875
No 294
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.02 E-value=0.077 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+.|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.98 E-value=0.093 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..+|+|+|+.|+||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 296
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.98 E-value=0.091 Score=55.28 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
++|.|.|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 297
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.93 E-value=0.29 Score=55.22 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+|.++|.+|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999988764
No 298
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.93 E-value=0.083 Score=53.58 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..++|.|+|+.|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999988763
No 299
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.91 E-value=0.098 Score=51.99 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
....|.|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999987
No 300
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.89 E-value=0.15 Score=57.45 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=35.2
Q ss_pred cccccHHHHHHHHHHhC------------------------------CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 155 AFESRMPTLRSILSALE------------------------------DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 155 ~~~gr~~~~~~l~~~l~------------------------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.++|.+..++.+...+. ......+.++|++|+|||++|+.+++...
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788888777766651 11235688999999999999999998763
No 301
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.88 E-value=0.1 Score=52.50 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+|.|.|+.|+||||+|+.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998764
No 302
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.86 E-value=0.092 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.85 E-value=0.097 Score=53.24 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....+|+|+|+.|+|||||++.+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3457999999999999999999987653
No 304
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.74 E-value=0.31 Score=55.94 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=36.7
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
+++.|. -.+...++|.|..|+|||+|++++.+... -+.++++-+.+.
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER 269 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGER 269 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEEC
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEeccc
Confidence 455554 34567899999999999999999987643 467888888876
No 305
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.74 E-value=0.18 Score=51.77 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQ 223 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 223 (1210)
...++.|+|.+|+||||+|..++. .. -..++|++.....+...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH
Confidence 346999999999999999999998 21 2467888776655555443
No 306
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.71 E-value=0.11 Score=52.25 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988753
No 307
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.68 E-value=0.31 Score=50.87 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEecCCcCHHHHHHHHHHHhC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDK----IFDQVVFAEVSQSQDIRKIQGEIADKLG 231 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (1210)
..++.|+|.+|+||||||..++....... .-..++|++....+....+ .++++.++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g 83 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYG 83 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcC
Confidence 46999999999999999999998643211 1356888887765555444 33444443
No 308
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.68 E-value=0.22 Score=56.92 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=40.3
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCH-HHHHHH
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDI-RKIQGE 225 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~ 225 (1210)
+++.+. -.+...++|.|..|+|||+|++++.+... -+.++++-+.+.... .++.++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHH
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHH
Confidence 455554 24557899999999999999999877532 467888888877653 344444
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.65 E-value=0.099 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 040332 176 NMLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.63 E-value=0.11 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 311
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.59 E-value=0.16 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 312
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.58 E-value=0.12 Score=52.31 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....+|+|.|+.|+||||+|+.+.+...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999997653
No 313
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.55 E-value=0.084 Score=52.49 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 314
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.53 E-value=0.11 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
....+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999875
No 315
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.48 E-value=0.13 Score=51.28 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...|.+.|+.|+||||+|+.+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998654
No 316
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.41 E-value=0.12 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.++|+|..|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998875
No 317
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.41 E-value=0.11 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|+|.|++|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 318
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.40 E-value=0.13 Score=52.58 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
..+|.|.|++|+||||+|+.+......
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 368999999999999999999998764
No 319
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.33 E-value=0.12 Score=54.38 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999998754
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.32 E-value=0.2 Score=52.23 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....+|.|.|++|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999997753
No 321
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.30 E-value=0.1 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 322
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.29 E-value=0.12 Score=52.54 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 323
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.28 E-value=0.11 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 040332 176 NMLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.28 E-value=0.13 Score=51.30 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999997653
No 325
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.27 E-value=0.1 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
|.|.|+|+.|+|||||++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999987753
No 326
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.26 E-value=0.091 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999998764
No 327
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.22 E-value=0.13 Score=54.53 Aligned_cols=26 Identities=19% Similarity=0.565 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998743
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.15 E-value=0.14 Score=51.69 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|.|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 329
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.13 E-value=0.12 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 330
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.10 E-value=0.14 Score=52.17 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+|+|+|..|.|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998754
No 331
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.10 E-value=0.13 Score=53.98 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+..+|+|+|+.|+||||+++.+.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999997764
No 332
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.08 E-value=0.094 Score=52.04 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999988754
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.00 E-value=0.13 Score=51.39 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998754
No 334
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.98 E-value=0.17 Score=50.17 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=28.0
Q ss_pred HHHHHHHhCC-CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 163 LRSILSALED-PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 163 ~~~l~~~l~~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+..+..++.. +....+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444432 2335799999999999999999998864
No 335
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.97 E-value=0.11 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVA 196 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~ 196 (1210)
...+++|+|..|.|||||++..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999744
No 336
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.95 E-value=0.14 Score=49.91 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 337
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.93 E-value=0.14 Score=52.67 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...|.|.|++|+||||+|+.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998764
No 338
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.87 E-value=0.17 Score=54.76 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+|+|.|..|+||||+|+.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999987664
No 339
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.84 E-value=0.14 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
...+|+|+|+.|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999864
No 340
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.72 E-value=0.11 Score=52.26 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36899999999999999999988653
No 341
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.66 E-value=0.15 Score=51.97 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQ 207 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~ 207 (1210)
..+|+|.|+.|+||||+|+.+....... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876542 3555
No 342
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.63 E-value=0.16 Score=51.92 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQ 207 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~ 207 (1210)
...+|+|.|+.|+||||+|+.+....... .++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 34689999999999999999999887543 3554
No 343
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.61 E-value=0.34 Score=53.45 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEE-EEEe----------------cCCcCHHHHHHHHHHHhCCCccc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVV-FAEV----------------SQSQDIRKIQGEIADKLGLKFHE 236 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~v----------------s~~~~~~~~~~~i~~~l~~~~~~ 236 (1210)
...+++|+|+.|.||||+.+.+....... ...++ .+.- ....+.......++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL------ 193 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL------ 193 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh------
Confidence 33599999999999999999998765422 11111 1110 00001112222344444
Q ss_pred CCcccccCccEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhh
Q 040332 237 ESEPGREEKKILVILDNIWENLDLRVVGIPHGDDHRGCKILLTARSLDVL 286 (1210)
Q Consensus 237 ~~~~~~~~kr~LlvlDdv~~~~~~~~~~~~~~~~~~gs~iivTtR~~~v~ 286 (1210)
....=+|++|.+.+.+.++.+.... ..|..|++||-....+
T Consensus 194 ------~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 ------REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp ------TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred ------hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 3334478899999877666543332 2355688888765543
No 344
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.61 E-value=0.15 Score=50.87 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.-.+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998864
No 345
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.57 E-value=0.27 Score=55.15 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=40.5
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC----eEEEEEecCCc-CHHHHHHHHHH
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD----QVVFAEVSQSQ-DIRKIQGEIAD 228 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~ 228 (1210)
.++.+. =.+...++|.|..|+|||+|+.++.+..... -+ .++++-+.+.. .+.++.+++.+
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~--~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVL--DSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCS--SCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhc--cCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 445444 2334567999999999999999999876531 24 56777777654 33455555443
No 346
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.49 E-value=0.15 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 347
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.47 E-value=0.14 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 040332 176 NMLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 348
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.44 E-value=0.19 Score=52.84 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999998753
No 349
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.42 E-value=0.76 Score=51.88 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
..++|.++|.+|+||||++..++.....+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999887643
No 350
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.30 E-value=0.16 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...|.|.|++|+||||+|+.+.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998653
No 351
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.28 E-value=0.18 Score=54.41 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+++|+|..|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999987764
No 352
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.19 E-value=0.17 Score=50.12 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=51.9
Q ss_pred hhcCCcceEEEecCc-ccc-----cCCccccCCCCCcEEEecCccCCC--CCC----CCCCCCCcEEEeecCCCc-----
Q 040332 546 FERMIQVRVINLSYV-DLL-----SLPSSLVLLSNLRTLSLYYCKLLD--ISG----IGDLKKLEFLCLRGCDIR----- 608 (1210)
Q Consensus 546 ~~~l~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~~~~--~~~----i~~L~~L~~L~l~~~~l~----- 608 (1210)
...-..|+.|+|+++ .|. .+-+.+..-+.|+.|+|++|.+.+ ... +..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567888899875 664 244556666788888888887765 222 234456777777777665
Q ss_pred ccCcccCCCCCCCEEecCCC
Q 040332 609 QLPIEVGELICLKLLDLRDC 628 (1210)
Q Consensus 609 ~lp~~i~~l~~L~~L~l~~~ 628 (1210)
.+-..+..-+.|++|+++++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 23334444455666666643
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.19 E-value=0.17 Score=54.79 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....+|+|+|..|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4467999999999999999999998765
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.18 E-value=0.15 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...|.|.|++|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 355
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.14 E-value=0.19 Score=48.16 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
....+++|+|..|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999999875
No 356
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.12 E-value=0.18 Score=52.97 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+|+|+|+.|+||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446999999999999999999998765
No 357
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.01 E-value=0.17 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 358
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.97 E-value=0.1 Score=53.30 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
.+|+|.|..|+||||+|+.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999988753
No 359
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.97 E-value=0.33 Score=52.94 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
....+++|+|..|+||||+++.++...+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999987764
No 360
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.94 E-value=0.2 Score=50.93 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....+|.|.|+.|+||||+|+.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457999999999999999999998765
No 361
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.89 E-value=0.18 Score=56.97 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=36.5
Q ss_pred ccccccHHHHHHHHHHhCC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 154 EAFESRMPTLRSILSALED--------------PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
..++|.++.++.+...+.. ...+-|.++|++|+||||+|+.++.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3567888888777655521 13456899999999999999999988753
No 362
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.87 E-value=0.19 Score=52.57 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
....+|+|.|..|.|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998864
No 363
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.87 E-value=0.18 Score=51.18 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+++|+|+.|+|||||++.+..-..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346999999999999999999998753
No 364
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.87 E-value=0.55 Score=54.27 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
..++|.|+|.+|+||||++..++.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999987653
No 365
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.80 E-value=0.39 Score=52.24 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=32.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD 218 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 218 (1210)
....++|+|+|-||+||||+|..++.....+ =..++-|+.....+
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~~ 82 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPKHD 82 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSSCC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCCCC
Confidence 4467899999999999999999999877643 12466677665443
No 366
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.78 E-value=0.18 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 367
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.74 E-value=0.39 Score=53.37 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=29.7
Q ss_pred HHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 163 LRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 163 ~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..++++.+. ..+..+|+|+|.+|+||||++..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444455554 45678999999999999999999987754
No 368
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.73 E-value=0.59 Score=51.12 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccC---------CC-----CeEEEEEecCCcCHHHHHHHHHHHhCC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDK---------IF-----DQVVFAEVSQSQDIRKIQGEIADKLGL 232 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (1210)
...++.|+|.+|+||||+|.+++....... .. ..++|++....++..++. ++++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 347999999999999999999997642110 11 468999988887777665 34555543
No 369
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.71 E-value=0.61 Score=50.98 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=41.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEEEEecCCcCHHHHHHHHHHHhC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKI----FDQVVFAEVSQSQDIRKIQGEIADKLG 231 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (1210)
..++.|+|.+|+||||+|.+++........ -..++|++....++...+. ++++.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 469999999999999999999987532210 2468999988877776664 4455554
No 370
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.70 E-value=0.5 Score=48.73 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEecCCcC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDK----IFDQVVFAEVSQSQD 218 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~ 218 (1210)
..+++|+|..|+|||||++.++....... .-..++|+.-.....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 47999999999999999999987543210 134577876554433
No 371
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.66 E-value=0.16 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 372
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.63 E-value=0.18 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.61 E-value=0.19 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 374
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.56 E-value=0.18 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+++|+|..|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 375
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.55 E-value=0.18 Score=49.01 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
++++|+|..|.|||||++.+......+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999877643
No 376
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.50 E-value=0.66 Score=50.44 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 040332 162 TLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGEIADK 229 (1210)
Q Consensus 162 ~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 229 (1210)
.++++..-+ ....++.|.|.+|+||||+|.+++.....+. ..++|++.. .+...+...+...
T Consensus 57 ~LD~~lgGl--~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSB--CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHhhcCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 355554222 3346899999999999999999998765432 568888765 4566666666554
No 377
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.50 E-value=0.64 Score=52.79 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEec
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVS 214 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 214 (1210)
..++|.++|.+|+||||+|..++.....+... .+.-|+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecC
Confidence 46899999999999999999999887653122 34445443
No 378
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.47 E-value=0.37 Score=51.87 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+|.|+|.+|+||||++..++.....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4579999999999999999999988764
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.39 E-value=0.23 Score=49.02 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|+|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 380
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.37 E-value=0.21 Score=50.96 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457999999999999999999998754
No 381
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.31 E-value=0.22 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|.|.|++|+||||.|+.+..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998875
No 382
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.27 E-value=0.73 Score=50.79 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEecCCcCHHHHHHHHHHHhC
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDK----IFDQVVFAEVSQSQDIRKIQGEIADKLG 231 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (1210)
...++.|+|.+|+||||+|.+++....... .-..++|++....++...+. +++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 457999999999999999999998743211 12468899988877776654 4455554
No 383
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.21 E-value=0.19 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998764
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.20 E-value=0.24 Score=53.32 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+++|+|..|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999988764
No 385
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.08 E-value=0.25 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 386
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.07 E-value=0.36 Score=54.08 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=39.5
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhcc--------CCCC-eEEEEEecCCcC-HHHHHHHHH
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSD--------KIFD-QVVFAEVSQSQD-IRKIQGEIA 227 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~~-~~~~~~~i~ 227 (1210)
.++.+. =.+...++|.|..|+|||+|+.++++..... ++=+ .++++-+.+... +.++.+++.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~ 209 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFE 209 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhh
Confidence 445444 2344677899999999999999998876531 1112 567777776543 344544443
No 387
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.04 E-value=0.72 Score=51.69 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEecCCcCHHHHHHHHHHHhCC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDK----IFDQVVFAEVSQSQDIRKIQGEIADKLGL 232 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (1210)
..++.|+|.+|+|||||+..++-...... .-..++|++....+....+ +.+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 46999999999999999998764432211 2345889887766665544 346666653
No 388
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.02 E-value=0.24 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.637 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 389
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.98 E-value=0.25 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..+|+|.|+.|.||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 390
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.97 E-value=0.24 Score=53.80 Aligned_cols=25 Identities=40% Similarity=0.450 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|+|.|+.|+||||||+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 391
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.92 E-value=0.26 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.++++|+|..|+|||||+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999998754
No 392
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.83 E-value=0.24 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..|.|.|++|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 393
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.76 E-value=0.16 Score=50.40 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=72.4
Q ss_pred ccCCCCCcEEEecCc-cCCC------CCCCCCCCCCcEEEeecCCCc-----ccCcccCCCCCCCEEecCCCCCCCc---
Q 040332 569 LVLLSNLRTLSLYYC-KLLD------ISGIGDLKKLEFLCLRGCDIR-----QLPIEVGELICLKLLDLRDCSKLEV--- 633 (1210)
Q Consensus 569 i~~l~~L~~L~L~~~-~~~~------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~--- 633 (1210)
+.+-..|+.|+|+++ .+.. .+.+..-..|+.|+|++|.+. .+...+..-+.|++|+++.| .++.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 345678999999986 6654 234566678999999999886 34445556678999999988 5543
Q ss_pred --cChhhhcCCCcccEEEccCCCCccccccccccCccccccCCCCCEEEeeccC
Q 040332 634 --IPPHILSNLSHLEELNIGDNSFYHWEVEVDGVKNASLNELKHLTSLQLRIKD 685 (1210)
Q Consensus 634 --~p~~~l~~L~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 685 (1210)
+... +..-+.|++|++++|................+..=+.|+.|+++.+.
T Consensus 116 ~ala~a-L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRS-TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHH-TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHH-HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1222 34556799999985422011111111233455566778888877553
No 394
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.72 E-value=0.28 Score=50.84 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...|.|.|+.|+||||+|+.+.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998864
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.64 E-value=0.25 Score=50.39 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 396
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.63 E-value=0.26 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 397
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.63 E-value=0.24 Score=59.64 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=39.6
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 151 KDYEAFESRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.....++|.+..++.+...+..+ ..+.|+|..|+||||||+.++....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34567889998888877777554 5889999999999999999998664
No 398
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=88.61 E-value=0.29 Score=55.92 Aligned_cols=47 Identities=26% Similarity=0.231 Sum_probs=36.2
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
+++.|. -.+...++|.|..|+|||+|+.++.+... -+.++++-+.+.
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER 258 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGER 258 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEEC
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEeccc
Confidence 455554 23457899999999999999999987643 467888888876
No 399
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.61 E-value=0.46 Score=48.90 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQ 207 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~ 207 (1210)
....|+|.|+.|+||||+++.+...... .++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc
Confidence 4578999999999999999999998764 3544
No 400
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.53 E-value=0.43 Score=51.88 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...++|+|+|.+|+||||++..++.....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999999987764
No 401
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.51 E-value=0.26 Score=49.89 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999998764
No 402
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.37 E-value=0.28 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
++|.|+|+.|+||||||+.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 403
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.37 E-value=0.23 Score=56.03 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=42.0
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCC--CCeEEEEEecCCcC-HHHHHHHHHH
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKI--FDQVVFAEVSQSQD-IRKIQGEIAD 228 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~-~~~~~~~i~~ 228 (1210)
.++.+. =.+...++|.|..|+|||+|+.++++.....+. =+.++++-+.+... ..++.+++..
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK 208 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh
Confidence 455554 234567888999999999999999998764211 14567777776543 4455555544
No 404
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.35 E-value=0.77 Score=49.51 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEecCCcCHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFD-QVVFAEVSQSQDIRKIQGEIAD 228 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~ 228 (1210)
...+++|+|.+|+|||||++.++...... -. .++|+.... ....+...+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 44699999999999999999999877543 12 466665433 34444444433
No 405
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.33 E-value=0.35 Score=55.02 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=53.9
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHH-HHHHHhhc----cCCCC-eEEEEEecCCcC-HHHHHHHHHHHhCCC----
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAE-EVARKIKS----DKIFD-QVVFAEVSQSQD-IRKIQGEIADKLGLK---- 233 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~-~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~---- 233 (1210)
.++.+. =.+...++|+|..|+|||+||. .+.+.... ..+-+ .++++-+.+... +.++.+++.+.-...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 444444 3455678999999999999954 55555432 12244 467888887643 345555554321111
Q ss_pred ---cccCCcccc----------------cCccEEEEEeCCCCc
Q 040332 234 ---FHEESEPGR----------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 234 ---~~~~~~~~~----------------~~kr~LlvlDdv~~~ 257 (1210)
..+++...+ .++..|+++||+-..
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 011111111 799999999998543
No 406
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.26 E-value=0.82 Score=51.74 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHH-HHHHHHhhccCCCCe-EEEEEecCCcC-HHHHHHHHHHHhCCC-------c
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLA-EEVARKIKSDKIFDQ-VVFAEVSQSQD-IRKIQGEIADKLGLK-------F 234 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~ 234 (1210)
.++.+. =.+...++|.|..|+|||+|| ..+.+. ++-+. ++++-+.+... +.++.+++.+.-... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 344444 344567899999999999997 455553 22443 67888887643 445555544431111 0
Q ss_pred ccCCcccc----------------cCccEEEEEeCCCCc
Q 040332 235 HEESEPGR----------------EEKKILVILDNIWEN 257 (1210)
Q Consensus 235 ~~~~~~~~----------------~~kr~LlvlDdv~~~ 257 (1210)
.+++...+ +++..||++||+-..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 11111111 799999999998543
No 407
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.09 E-value=0.3 Score=53.07 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....+|+|+|..|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457999999999999999999998654
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.90 E-value=0.33 Score=53.46 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+++|+|..|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999988764
No 409
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.90 E-value=0.58 Score=51.64 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=33.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCC----CeEEEEEecCCcCHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIF----DQVVFAEVSQSQDIR 220 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~ 220 (1210)
...++.|+|..|+|||||+..++......... ..++|++....+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 45799999999999999999999875311111 235888876654433
No 410
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.88 E-value=0.75 Score=47.31 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...|.|.|..|+||||+++.+....... .+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 4689999999999999999999987653 46644443
No 411
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.81 E-value=0.29 Score=55.54 Aligned_cols=87 Identities=18% Similarity=0.196 Sum_probs=52.7
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHH-HHHHHhhccCCCCe-EEEEEecCCcC-HHHHHHHHHHHhCCC-------c
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAE-EVARKIKSDKIFDQ-VVFAEVSQSQD-IRKIQGEIADKLGLK-------F 234 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~-~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~ 234 (1210)
.++.+. =.+...++|+|..|+|||+||. .+.+.. .-+. ++++-+.+... +.++.+++.+.-... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 455554 3455678999999999999965 555543 2464 57777777643 345555554421111 0
Q ss_pred ccCCcccc----------------cCccEEEEEeCCCC
Q 040332 235 HEESEPGR----------------EEKKILVILDNIWE 256 (1210)
Q Consensus 235 ~~~~~~~~----------------~~kr~LlvlDdv~~ 256 (1210)
.+++...+ .++..|+++||+-.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 11111111 79999999999854
No 412
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.80 E-value=0.36 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999998765
No 413
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.79 E-value=0.29 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998754
No 414
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.69 E-value=0.27 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
...+++|+|+.|+|||||++.+...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999843
No 415
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.60 E-value=0.2 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=16.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-HHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVA-RKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~-~~~ 199 (1210)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 416
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.55 E-value=0.53 Score=49.06 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=23.3
Q ss_pred CceEEEEEc-CCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYG-MGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G-~gGiGKTtLa~~v~~~~~~ 201 (1210)
..++|+|+| -||+||||+|..++.....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~ 31 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQ 31 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHh
Confidence 457888886 5999999999999987753
No 417
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.49 E-value=0.31 Score=50.53 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.. .+++|+|+.|.|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 799999999999999999998654
No 418
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.46 E-value=0.45 Score=49.15 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEec
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVS 214 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 214 (1210)
..++.|+|.+|+|||||++.++...... =..++|+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEcc
Confidence 4689999999999999999999765432 1246666543
No 419
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.41 E-value=0.22 Score=53.41 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
+..+|+|.|..|+||||+|+.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 420
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.36 E-value=0.75 Score=46.46 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
.|.+.|.||+||||+|..++.....+ -++ +.++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCC-EEEEEeCC
Confidence 47788999999999999999887643 234 34444544
No 421
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.35 E-value=0.74 Score=46.83 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEE
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVV 209 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~ 209 (1210)
.....|.|.|..|+||||+++.+.+.......++.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 4567999999999999999999999876512345443
No 422
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.30 E-value=0.53 Score=49.13 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
..++.|.|.+|+||||+|.+++...... =..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 4689999999999999999887765432 24577877554
No 423
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.27 E-value=0.94 Score=45.80 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEE
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVV 209 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~ 209 (1210)
..|.+-|..|+||||+++.+.+..... .+..++
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~ 36 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMV 36 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcce
Confidence 589999999999999999999988654 343333
No 424
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.25 E-value=0.42 Score=50.83 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..++|.|+|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999774
No 425
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.17 E-value=0.34 Score=48.37 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 426
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.06 E-value=0.27 Score=53.09 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34699999999999999999999654
No 427
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.00 E-value=0.4 Score=54.68 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+++|+|..|+|||||++.++.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 4579999999999999999999987753
No 428
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.98 E-value=0.28 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
..+++|+|..|.|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999876
No 429
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=86.83 E-value=0.28 Score=55.67 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=52.2
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHH-HHHHHhhccCCCCe-EEEEEecCCcC-HHHHHHHHHHHhCCC-------c
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAE-EVARKIKSDKIFDQ-VVFAEVSQSQD-IRKIQGEIADKLGLK-------F 234 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~-~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~ 234 (1210)
.++.+. =.+...++|+|..|+|||+||. .+.+.. .-|. ++++-+.+... +.++.+++.+.-... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 444444 2345678999999999999965 666543 2564 57777777643 345555554321110 1
Q ss_pred ccCCcccc----------------cCccEEEEEeCCCC
Q 040332 235 HEESEPGR----------------EEKKILVILDNIWE 256 (1210)
Q Consensus 235 ~~~~~~~~----------------~~kr~LlvlDdv~~ 256 (1210)
.+++...+ .++..|+++||+-.
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11111111 79999999999854
No 430
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.80 E-value=0.56 Score=57.31 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=36.9
Q ss_pred CcccccccHHHHHHHHHHhCC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 152 DYEAFESRMPTLRSILSALED-------------PDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
....+.|.++.++++...+.- ...+-|-++|++|.|||.+|+++++....
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 345566778777777665431 12456789999999999999999998753
No 431
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.71 E-value=0.63 Score=49.99 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
...+++|+|.+|+||||++..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987764
No 432
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.70 E-value=0.61 Score=49.02 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
....+++|+|+.|.||||+++.+.....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4457999999999999999999988654
No 433
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.67 E-value=0.77 Score=48.65 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQ 215 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 215 (1210)
++|+|.|-||+||||+|..++.....+ =..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCC
Confidence 578889999999999999999887643 22456666654
No 434
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.60 E-value=0.3 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+++|+|..|+|||||.+.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999988654
No 435
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.59 E-value=0.8 Score=50.28 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=33.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhh--ccCCCCeEEEEEecCCcC
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKIK--SDKIFDQVVFAEVSQSQD 218 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~ 218 (1210)
....+++.+.|.||+||||+|..++.... .. =..++-|+.....+
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~ 61 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHN 61 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCC
Confidence 45568999999999999999999998775 32 23466666664433
No 436
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.58 E-value=0.33 Score=50.24 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=26.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|+.|.|||||.+.+..-.+ ...+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEE
Confidence 346999999999999999999986543 23445554
No 437
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.26 E-value=0.39 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 438
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.23 E-value=0.46 Score=49.26 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998654
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.14 E-value=0.44 Score=46.09 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998753
No 440
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.09 E-value=0.36 Score=50.00 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999998654
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.02 E-value=0.47 Score=49.37 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...|+|.|..|+||||+++.+.....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 442
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.01 E-value=0.46 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+.|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998643
No 443
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=85.98 E-value=0.9 Score=53.85 Aligned_cols=101 Identities=17% Similarity=0.119 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHHHHHH-------HHHHhCCCccc-CCcccccCcc
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRKIQGE-------IADKLGLKFHE-ESEPGREEKK 246 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~-------i~~~l~~~~~~-~~~~~~~~kr 246 (1210)
.+++.|.|.+|.||||++..+....... ...+.+......-...+... |.+.++..... ........+-
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~ 280 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPY 280 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccC
Confidence 3689999999999999999999876543 12334433322222222111 12222211100 0000001122
Q ss_pred EEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeC
Q 040332 247 ILVILDNIWEN--LDLRVVGIPHGDDHRGCKILLTAR 281 (1210)
Q Consensus 247 ~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~iivTtR 281 (1210)
=+||+|.+... ..+..+...++ .|.++|+.-=
T Consensus 281 dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 281 DLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred CEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 38999998654 34455655554 4567776543
No 444
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.92 E-value=0.37 Score=50.76 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|+.|+|||||.+.++.-.. ...+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 446999999999999999999986543 23455554
No 445
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.88 E-value=0.42 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...|+|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998753
No 446
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=85.76 E-value=0.87 Score=49.73 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=33.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCH
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDI 219 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 219 (1210)
....+++.+.|-||+||||+|..++...... =..++-|+.....+.
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l 58 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNL 58 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCCh
Confidence 4456788888999999999999999887643 235667776654433
No 447
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.71 E-value=0.44 Score=51.06 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+...+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455799999999999999999999765
No 448
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.66 E-value=0.39 Score=50.50 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=26.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|..|.|||||++.++.-.. ...+.+++
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~ 83 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIII 83 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEE
Confidence 447999999999999999999886543 23445554
No 449
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.66 E-value=0.36 Score=51.16 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|+.|.|||||++.+..-.. ...+.+++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~ 67 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILF 67 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEE
Confidence 346899999999999999999986543 23455554
No 450
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.65 E-value=1.3 Score=44.71 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeE
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQV 208 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~ 208 (1210)
...|.|.|+.|+||||+++.+....... .++.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcc
Confidence 4689999999999999999999987643 35553
No 451
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.63 E-value=0.45 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
...+++|+|..|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999999875
No 452
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.62 E-value=0.34 Score=54.99 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
..++|.|+|.+|+||||+|..++.....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987653
No 453
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.57 E-value=0.75 Score=53.09 Aligned_cols=46 Identities=4% Similarity=-0.077 Sum_probs=34.8
Q ss_pred ccccHHHHHHHHHHhC--CCCceEEEEEcCCCCcHHHHHHHHHHHhhc
Q 040332 156 FESRMPTLRSILSALE--DPDVNMLGIYGMGGIGKTMLAEEVARKIKS 201 (1210)
Q Consensus 156 ~~gr~~~~~~l~~~l~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~ 201 (1210)
-+.|.+..+.+.+... .....+|.+.|+.|+||||+|+.+......
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3466666666666552 335578999999999999999999999863
No 454
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.49 E-value=0.85 Score=45.32 Aligned_cols=26 Identities=23% Similarity=0.092 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
....|.|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998753
No 455
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.48 E-value=0.42 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
...+++|+|..|.|||||.+.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 456
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=85.47 E-value=0.99 Score=48.42 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQS 216 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 216 (1210)
.++|+|.|-||+||||+|..++.....+ =..++-|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 3688889999999999999999887643 124566666543
No 457
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.41 E-value=0.47 Score=52.70 Aligned_cols=28 Identities=25% Similarity=0.126 Sum_probs=24.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
-....+++|+|+.|.|||||++.+....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455799999999999999999999754
No 458
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=85.37 E-value=0.27 Score=58.72 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=32.7
Q ss_pred ccccccHHHHHHHHHHhCCCCce-----------EEEEEcCCCCcHHHHHHHHHHHh
Q 040332 154 EAFESRMPTLRSILSALEDPDVN-----------MLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~-----------vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
+.++|.+..+..+.-.+..+..+ -|-++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 44667777666555444433222 58899999999999999998754
No 459
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.33 E-value=1.8 Score=42.60 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
..|-|++..|.||||.|-...-+.-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4666677777999999999988764
No 460
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.30 E-value=0.4 Score=47.39 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 040332 177 MLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
-|+|+|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999876
No 461
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.24 E-value=0.66 Score=49.80 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEV 213 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 213 (1210)
..+++++|.+|+||||++..++.....+ =..+.++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEec
Confidence 5799999999999999999999877543 123445544
No 462
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=85.24 E-value=0.33 Score=49.23 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
..+++|+|..|.|||||.+.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998654
No 463
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.23 E-value=1.1 Score=45.29 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=31.2
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHH
Q 040332 177 MLGIY-GMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRK 221 (1210)
Q Consensus 177 vi~i~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (1210)
+|+|+ +-||+||||+|..++.....+ - .++-|+.....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~--g-~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ--G-ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT--S-CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc--C-CEEEEECCCCCCHHH
Confidence 67776 579999999999999888754 2 677777766554433
No 464
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.21 E-value=0.45 Score=49.53 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+++|+|..|.|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44799999999999999999998654
No 465
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.15 E-value=0.39 Score=49.40 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+++|+|..|.|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 466
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.11 E-value=0.39 Score=50.64 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|..|.|||||++.+..-... ..+.+++
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~~ 70 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHL 70 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCC---SSCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEE
Confidence 3469999999999999999999875432 3455554
No 467
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.10 E-value=0.39 Score=49.86 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=26.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|..|.|||||.+.++.-.. ...+.+++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~ 65 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIF 65 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEE
Confidence 346999999999999999999986543 23455554
No 468
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.10 E-value=0.43 Score=49.95 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|..|.|||||.+.++.-.. ...+.+++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~ 74 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTV 74 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE
Confidence 446999999999999999999986543 23445544
No 469
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.01 E-value=0.43 Score=51.00 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...++.|+|.+|+||||||..++....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 347999999999999999999987553
No 470
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.99 E-value=0.53 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6899999999999999999998754
No 471
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.97 E-value=0.39 Score=47.25 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.+.|.|.|..|+||||||.++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998764
No 472
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.94 E-value=0.4 Score=50.40 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|..|.|||||.+.++.-.. ...+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~ 66 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYF 66 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE
Confidence 346999999999999999999986543 23445544
No 473
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=84.90 E-value=0.47 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998653
No 474
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=84.89 E-value=0.53 Score=47.46 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 163 LRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 163 ~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.+.+.+.......-.|.|+|.+|+|||||...+.+..
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3334344444555678999999999999999888653
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=84.88 E-value=0.39 Score=54.65 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 172 DPDVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 172 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.....+|.|+|++|+||||+|+.+..+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456899999999999999999998754
No 476
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.69 E-value=0.45 Score=50.02 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+++|+|..|.|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999998654
No 477
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.65 E-value=0.42 Score=49.82 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|..|.|||||++.++.-.. ...+.+++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 346899999999999999999987543 23455554
No 478
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=84.60 E-value=0.99 Score=47.19 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=31.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcCHHH
Q 040332 178 LGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQDIRK 221 (1210)
Q Consensus 178 i~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (1210)
|+|.|-||+||||+|..++.....+. ..++-|+.....+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHH
Confidence 66799999999999999999876442 4466777765555443
No 479
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=84.50 E-value=0.46 Score=50.26 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|..|.|||||++.++.-.. ...+.+++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEE
Confidence 446999999999999999999987543 23455554
No 480
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.49 E-value=0.72 Score=45.36 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 173 PDVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 173 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998754
No 481
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=84.49 E-value=0.62 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
-.++|.|++|+||||+|+.+.....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998775
No 482
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=84.44 E-value=0.52 Score=45.52 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
.--|.|+|.+|+|||||+..+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998753
No 483
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.39 E-value=0.45 Score=49.61 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
...+++|+|..|.|||||.+.++.-..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346899999999999999999986543
No 484
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=84.39 E-value=0.96 Score=45.53 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=29.7
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHhhccCCCCeEEEEEecCCcC
Q 040332 176 NMLGIY-GMGGIGKTMLAEEVARKIKSDKIFDQVVFAEVSQSQD 218 (1210)
Q Consensus 176 ~vi~i~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 218 (1210)
++|+|+ +-||+||||+|..++.....+ =..++-|+.....+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCC
Confidence 678888 569999999999999887643 23466666654433
No 485
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.31 E-value=0.57 Score=46.10 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=25.8
Q ss_pred HHHHHHhCC-CCceEEEEEcCCCCcHHHHHHHHHH
Q 040332 164 RSILSALED-PDVNMLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 164 ~~l~~~l~~-~~~~vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
.++.+.+.. .....|.|+|.+|+|||||...+..
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 344444444 5667899999999999999988764
No 486
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.29 E-value=0.52 Score=46.78 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
-.|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 487
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.17 E-value=0.49 Score=49.98 Aligned_cols=35 Identities=29% Similarity=0.225 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|..|.|||||.+.++.-.. ...+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~ 66 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLY 66 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEE
Confidence 346999999999999999999986543 23455554
No 488
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=84.06 E-value=0.33 Score=55.18 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCCcHHHHHH-HHHHHhhccCCCCe-EEEEEecCCcC-HHHHHHHHHHHhCC-------CcccCCcccc-
Q 040332 174 DVNMLGIYGMGGIGKTMLAE-EVARKIKSDKIFDQ-VVFAEVSQSQD-IRKIQGEIADKLGL-------KFHEESEPGR- 242 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~-~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~- 242 (1210)
+...++|+|..|+|||+||. .+.+... -+. ++++-+.+... +.++.+++.+.-.. ...+++...+
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 45678999999999999965 6655432 453 57777777643 33444443321100 0111111111
Q ss_pred ---------------cCccEEEEEeCCCC
Q 040332 243 ---------------EEKKILVILDNIWE 256 (1210)
Q Consensus 243 ---------------~~kr~LlvlDdv~~ 256 (1210)
.++..|+++||+-.
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 79999999999754
No 489
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=84.05 E-value=0.61 Score=46.13 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 175 VNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 175 ~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 490
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=83.93 E-value=0.47 Score=49.63 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
...+++|+|..|.|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 491
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=83.84 E-value=0.48 Score=50.35 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARKIKSDKIFDQVVFA 211 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 211 (1210)
...+++|+|..|.|||||.+.++.-... ..+.+++
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~ 80 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNL 80 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEE
Confidence 3468999999999999999999865432 2345544
No 492
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=83.83 E-value=0.57 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.++|+|..|+|||||.+.++.-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998764
No 493
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.79 E-value=0.84 Score=45.08 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=26.5
Q ss_pred HHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 164 RSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 164 ~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
..+.+ +.......|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33455678999999999999999998854
No 494
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.66 E-value=0.43 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 040332 174 DVNMLGIYGMGGIGKTMLAEEVARK 198 (1210)
Q Consensus 174 ~~~vi~i~G~gGiGKTtLa~~v~~~ 198 (1210)
...+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998764
No 495
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=83.65 E-value=0.62 Score=44.77 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKI 199 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~ 199 (1210)
-|.|+|.+|+|||||...+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 496
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=83.56 E-value=1.6 Score=43.49 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 177 MLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 177 vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
.|+|=|..|+||||.++.+++..+.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 37788999999999999999988754
No 497
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=83.55 E-value=0.79 Score=45.90 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=23.9
Q ss_pred HHHHhC-CCCceEEEEEcCCCCcHHHHHHHHHH
Q 040332 166 ILSALE-DPDVNMLGIYGMGGIGKTMLAEEVAR 197 (1210)
Q Consensus 166 l~~~l~-~~~~~vi~i~G~gGiGKTtLa~~v~~ 197 (1210)
+++.+. ..+...|+++|.+|+|||||...+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 444442 34445689999999999999998864
No 498
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=83.48 E-value=1.3 Score=51.11 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHhCCCCceEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 040332 158 SRMPTLRSILSALEDPDVNMLGIYGMGGIGKTMLAEEVARKIKSD 202 (1210)
Q Consensus 158 gr~~~~~~l~~~l~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 202 (1210)
+....++.+...+.+++ +.+.|.|.+|+||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34455666666665544 489999999999999999999887644
No 499
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=83.38 E-value=0.7 Score=46.35 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 176 NMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 176 ~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+|+|.|+.|+||||+|+.++....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999886
No 500
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.35 E-value=1 Score=52.78 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHHh--CCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 040332 158 SRMPTLRSILSAL--EDPDVNMLGIYGMGGIGKTMLAEEVARKIK 200 (1210)
Q Consensus 158 gr~~~~~~l~~~l--~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~ 200 (1210)
.+.+..+.+.... .-....+|+|+|+.|+|||||++.++....
T Consensus 350 ~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 350 SFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 4444444444333 123457999999999999999999998875
Done!