BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040336
(1211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 543 NLDARRRITFFTNSLFMNIPSAPKVRDMISFSVLTPYYREDVLYSVDELYKENEDGISTL 602
N++ R++T F + +F+ +P P+V EDVL+ K + G T+
Sbjct: 48 NVETARQVTEFADIIFIXVPDTPQV--------------EDVLFGEHGCAKTSLQG-KTI 92
Query: 603 FYLQKIYPDEWMNFQKRINDPKLNYSD 629
I P E F +R+N+ +Y D
Sbjct: 93 VDXSSISPIETKRFAQRVNEXGADYLD 119
>pdb|3AJW|A Chain A, Structure Of Flij, A Soluble Component Of Flagellar Type
Iii Export Apparatus
Length = 150
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 24/135 (17%)
Query: 401 ALDMAKDFKEKEDTDLFKKIKKDDYMRSAVVECYETLREIIYGLLEDETDRNIVRKICYD 460
AL+ KD EKE D + + + MR + E L+ +I E ++ N D
Sbjct: 9 ALETLKDLAEKEVDDAARLLGE---MRRGCQQAEEQLKMLIDYQNEYRSNLNT------D 59
Query: 461 VDIFIQQHKFLNEFRMNRIPSLGEKLEKILERYRVQIQSNYKKEQRFERLNIALTQNKSW 520
+ I ++++N + LEK +E++R+Q+ Q +++++AL KSW
Sbjct: 60 MGNGIASNRWIN------YQQFIQTLEKAIEQHRLQLT------QWTQKVDLAL---KSW 104
Query: 521 REKVVRLHLLFTVKE 535
REK RL T+++
Sbjct: 105 REKKQRLQAWQTLQD 119
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 33.1 bits (74), Expect = 0.94, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 615 NFQKRINDPKLNYSDDDKKEATRHWVSYRGQTLSRTVRGMMYYKHALELQCFLES 669
N + I+DPK N++++DKK+ V G T+ + +G YY A+ + +E+
Sbjct: 196 NINEYIDDPKCNFTEEDKKKIAED-VKTAGATIIKN-KGATYYGIAVSINTIVET 248
>pdb|1W33|A Chain A, Bbcrasp-1 From Borrelia Burgdorferi
pdb|1W33|B Chain B, Bbcrasp-1 From Borrelia Burgdorferi
pdb|4ATR|A Chain A, Further Structural Insights Into The Binding Of Complement
Factor H By Complement Regulator Acquiring Surface
Protein 1, Cspa (Bbcrasp-1), Of Borrelia Burgdorferi.
pdb|4ATR|B Chain B, Further Structural Insights Into The Binding Of Complement
Factor H By Complement Regulator Acquiring Surface
Protein 1, Cspa (Bbcrasp-1), Of Borrelia Burgdorferi.
pdb|4ATR|C Chain C, Further Structural Insights Into The Binding Of Complement
Factor H By Complement Regulator Acquiring Surface
Protein 1, Cspa (Bbcrasp-1), Of Borrelia Burgdorferi.
pdb|4ATR|D Chain D, Further Structural Insights Into The Binding Of Complement
Factor H By Complement Regulator Acquiring Surface
Protein 1, Cspa (Bbcrasp-1), Of Borrelia Burgdorferi
Length = 181
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 413 DTDLFKKIKKD-----DYMRSAVVECYETLREIIYGLLEDETDRNIVRKICYDVDIFIQQ 467
D D+ KIK+ DY + E E L+EI+ L ++ NI+ ++ Y + IQ
Sbjct: 48 DEDIQMKIKRTLYSSLDYKK----ENIEKLKEILEILKKNSEHYNIIGRLIYHISWGIQF 103
Query: 468 HKFLN-EFRMNRIPSLGEKLEKILERYRVQIQSNYKKEQRFER-LNIAL---TQNKSWRE 522
N E N + +L ++ K L +QI+SN + +QR ++ LN L QN E
Sbjct: 104 QIEQNLELIQNGVENLSQEESKSL---LMQIKSNLEIKQRLKKTLNETLKVYNQNTQDNE 160
Query: 523 KVVRLHL 529
K++ H
Sbjct: 161 KILAEHF 167
>pdb|1W3Z|A Chain A, Semet Derivative Of Bbcrasp-1 From Borrelia Burgdorferi
pdb|1W3Z|B Chain B, Semet Derivative Of Bbcrasp-1 From Borrelia Burgdorferi
Length = 181
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 413 DTDLFKKIKKD-----DYMRSAVVECYETLREIIYGLLEDETDRNIVRKICYDVDIFIQQ 467
D D+ KIK+ DY + E E L+EI+ L ++ NI+ ++ Y + IQ
Sbjct: 48 DEDIQXKIKRTLYSSLDYKK----ENIEKLKEILEILKKNSEHYNIIGRLIYHISWGIQF 103
Query: 468 HKFLN-EFRMNRIPSLGEKLEKILERYRVQIQSNYKKEQRFER-LNIAL---TQNKSWRE 522
N E N + +L ++ K L QI+SN + +QR ++ LN L QN E
Sbjct: 104 QIEQNLELIQNGVENLSQEESKSL---LXQIKSNLEIKQRLKKTLNETLKVYNQNTQDNE 160
Query: 523 KVVRLHL 529
K++ H
Sbjct: 161 KILAEHF 167
>pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Receptor (Domains 1-3)
Length = 478
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 23/106 (21%)
Query: 71 ITQAFLNLLQAALDIALSFNAWRSLKFTQILRYLLKFAVAAVWAAILPICYASSVQNSTR 130
+ + +L++L + A + ++R K T I YLL F VA + +
Sbjct: 24 VIEGYLHIL--LISKAEDYRSYRFPKLTVITEYLLLFRVAGLES---------------- 65
Query: 131 LVKFFSNLT--ESWQSQGSLYNYAVAIYLMPNILAVLLFFLPQFER 174
L F NLT W+ YNYA+ I+ M N+ + L+ L R
Sbjct: 66 LGDLFPNLTVIRGWKL---FYNYALVIFEMTNLKDIGLYNLRNITR 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,771,759
Number of Sequences: 62578
Number of extensions: 1524275
Number of successful extensions: 4442
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4439
Number of HSP's gapped (non-prelim): 12
length of query: 1211
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1101
effective length of database: 8,089,757
effective search space: 8906822457
effective search space used: 8906822457
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)