Query 040336
Match_columns 1211
No_of_seqs 155 out of 334
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 75.8 1.1 3.6E-05 56.0 2.5 133 785-931 224-362 (802)
2 2ysr_A DEP domain-containing p 21.6 24 0.0008 33.7 0.6 27 348-374 8-34 (105)
3 1t8h_A YLMD protein sequence h 11.6 84 0.0029 34.7 1.8 24 892-924 28-52 (277)
4 1jb0_M Photosystem 1 reaction 11.2 1.5E+02 0.0052 23.0 2.5 23 278-302 4-26 (31)
5 3mkq_B Coatomer subunit alpha; 10.2 2.8E+02 0.0095 28.8 5.0 43 393-438 16-61 (177)
6 2z86_A Chondroitin synthase; G 9.8 93 0.0032 36.8 1.5 58 783-850 158-218 (625)
7 3fgr_B Putative phospholipase 7.6 1.1E+02 0.0036 35.3 0.7 16 881-896 328-343 (357)
8 1xg8_A Hypothetical protein SA 7.0 42 0.0014 32.6 -2.5 18 728-745 38-57 (111)
9 2z86_A Chondroitin synthase; G 6.8 2.3E+02 0.0077 33.5 3.0 191 697-932 375-567 (625)
10 2zpa_A Uncharacterized protein 6.2 69 0.0024 39.6 -1.9 19 1087-1108 281-299 (671)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=75.79 E-value=1.1 Score=55.96 Aligned_cols=133 Identities=15% Similarity=0.171 Sum_probs=83.4
Q ss_pred CCCCccccchhhhccccchhhccCCccchH-HHHHhhhhhHHHhccCCCCCCCceEecccceeeccc-----cccccccc
Q 040336 785 EGKPENQNHAIIFTRGEALQTIDMNQDNYF-EEAFKMRNVLEEFLKSPSGQREPTILGLREHIFTGS-----VSSLASFM 858 (1211)
Q Consensus 785 eGKpeNQNhAiiF~RGe~lQ~IDmNQDnYl-eE~lKmrnlL~ef~~~~~g~~~~~I~G~RE~iFs~~-----v~~La~~~ 858 (1211)
.||+.|-|+++=-++|||+-++|.+- .+ .++|+ .+++.++++. .+.+++.+-.+..++ .+......
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~--~~~pd~L~--~lv~~~~~dp----~v~~V~~~~~~~~~~~~~~~~~~~~~~~ 295 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADH--VPSRDFLA--RTVGYFVEDP----DLFLVQTPHFFINPDPIQRNLALGDRCP 295 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTE--EECTTHHH--HHHHHHHHSS----SCCEEECCCCBSSCCHHHHHHTCCTTSC
T ss_pred CcchHHHHHHHHhcCCCEEEEECCCC--CcChHHHH--HHHHHHhcCC----CeEEEeccEEEeCCchHhhhhhHHhhhh
Confidence 48999999999999999999999853 22 33333 5555775432 355666554444432 23332222
Q ss_pred ccchhHHHHHHHHHhhcccceeeeccCCcccccccccccCcccccccccccchhhhccccccccCceeeeEee
Q 040336 859 SNQETSFVTISQRILANPLRVRFHYGHSDIFDRIFHITRGGISKASKTINLSEDVFAGMNSTLRGGYITHHEY 931 (1211)
Q Consensus 859 a~qE~~F~Tl~qR~la~pl~~r~HYGHPD~~d~~f~~TrGGvSKAsk~lhLsEDIfaG~n~~lRgG~i~h~eY 931 (1211)
. .+..|-...++.... .+...--|+-=++.|.....-||... -.+.||..-++....+|.++.++.-
T Consensus 296 ~-~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ri~~~~~ 362 (802)
T 4hg6_A 296 P-ENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGWKSLYIDR 362 (802)
T ss_dssp C-TTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTCCEEECCC
T ss_pred H-HHHHHHHHHHhhHhh-cCCceecccchhhhHHHHHHcCCcCC----CCcchHHHHHHHHHHcCCeEEEecC
Confidence 2 233444445554433 33333345555666666666688764 3568999999999999999887653
No 2
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.64 E-value=24 Score=33.68 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=22.3
Q ss_pred ccchhhhHHHHhhcccccCCChhhhcc
Q 040336 348 ASFSHVWNEFIESMRAEDLISNEDRDL 374 (1211)
Q Consensus 348 ~~fs~vWN~iI~Smr~EdLis~re~~~ 374 (1211)
.+-.++||+||..||....|-||...+
T Consensus 8 ~~at~lw~~ii~~~~~g~~ikdrr~~l 34 (105)
T 2ysr_A 8 YRATKLWNEVTTSFRAGMPLRKHRQHF 34 (105)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCCCCCSS
T ss_pred chHHHHHHHHHHHHHcCCCcceeeeCC
Confidence 455679999999999999998887655
No 3
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=11.63 E-value=84 Score=34.70 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=14.6
Q ss_pred cccccc-CcccccccccccchhhhccccccccCc
Q 040336 892 IFHITR-GGISKASKTINLSEDVFAGMNSTLRGG 924 (1211)
Q Consensus 892 ~f~~Tr-GGvSKAsk~lhLsEDIfaG~n~~lRgG 924 (1211)
.+++|| ||||++ .|+++|.-+.-|
T Consensus 28 ~~fttR~GGvS~~---------py~slNlg~~vg 52 (277)
T 1t8h_A 28 AGLTTKHGGESKG---------PFASLNMGLHVG 52 (277)
T ss_dssp EEEECSCSCCCCG---------GGCSCCCCSSSS
T ss_pred EEEEcCCCCccCC---------cccceeccCCCC
Confidence 345666 888776 467777554433
No 4
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=11.18 E-value=1.5e+02 Score=22.98 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhccc
Q 040336 278 MDTQIWYSIFSTLFGGIHGALSHLG 302 (1211)
Q Consensus 278 mDTqIWY~I~stl~G~~~G~~~~LG 302 (1211)
-|+||.-+.+.++.-++..+ |||
T Consensus 4 sd~Qi~iAL~~Al~~~iLA~--rLg 26 (31)
T 1jb0_M 4 TDTQVYVALVIALLPAVLAF--RLS 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHH
Confidence 49999999999999999877 888
No 5
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=10.15 E-value=2.8e+02 Score=28.79 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=30.6
Q ss_pred hccCchhHHHhHhHhhcCCCcHHHHHHhhhchhhh---HHHHHHHHHHH
Q 040336 393 LLAGKIPIALDMAKDFKEKEDTDLFKKIKKDDYMR---SAVVECYETLR 438 (1211)
Q Consensus 393 lla~ki~~Al~~a~~~~~~~d~~L~~~I~~~~~~~---~Av~e~y~~~~ 438 (1211)
|-.|.++.|+++|++. ++..-|+++.+.-... .=+++||..++
T Consensus 16 L~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4578999999999876 4568899997332111 13689999866
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=9.85 E-value=93 Score=36.81 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=42.0
Q ss_pred CCCCCCccccchhhhccccchhhccCCc---cchHHHHHhhhhhHHHhccCCCCCCCceEecccceeeccc
Q 040336 783 IGEGKPENQNHAIIFTRGEALQTIDMNQ---DNYFEEAFKMRNVLEEFLKSPSGQREPTILGLREHIFTGS 850 (1211)
Q Consensus 783 lGeGKpeNQNhAiiF~RGe~lQ~IDmNQ---DnYleE~lKmrnlL~ef~~~~~g~~~~~I~G~RE~iFs~~ 850 (1211)
.|-|++.+-|+|+-.++||++-.+|..- .++|++ +++.+++.. .+.++|.+.++-.+.
T Consensus 158 ~~~g~~~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~------~~~~~~~~~----~~~~~g~~~~~~~~~ 218 (625)
T 2z86_A 158 YGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQS------YMELLAVDD----NVALIGPRKYIDTSK 218 (625)
T ss_dssp CSCCHHHHHHHHHHHCCSSEEEEECTTEEECTTHHHH------HHHHHHHCT----TEEEECCEEEECCTT
T ss_pred CCcchhHHHHHHHHhCCcCEEEEECCCCCCCHHHHHH------HHHHHhcCC----ceEEEEeeeeccCcc
Confidence 4668999999999999999999998652 345555 444665432 477888887765544
No 7
>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_B*
Probab=7.63 E-value=1.1e+02 Score=35.32 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=13.1
Q ss_pred eeccCCcccccccccc
Q 040336 881 FHYGHSDIFDRIFHIT 896 (1211)
Q Consensus 881 ~HYGHPD~~d~~f~~T 896 (1211)
.|+||||.||=-|+..
T Consensus 328 ~H~G~Pd~~~F~~v~~ 343 (357)
T 3fgr_B 328 LHMGQPDLWMFSPIRV 343 (357)
T ss_dssp CCTTCCSEECCCCEEE
T ss_pred CcCCCCcCcCCCCEEE
Confidence 5999999999777553
No 8
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=7.04 E-value=42 Score=32.56 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=13.4
Q ss_pred HHHHhCCC--cEEEEeeccc
Q 040336 728 NLMIMYPS--LRVAYIDERE 745 (1211)
Q Consensus 728 ~L~~~~p~--lrvayide~~ 745 (1211)
.|-|+||+ .++.|||=-+
T Consensus 38 al~RKyp~~~f~~~YIDI~~ 57 (111)
T 1xg8_A 38 LLKRKYPNISFKYTYIDITK 57 (111)
T ss_dssp HHHHHCTTSCEEEEEEETTT
T ss_pred HHhCcCCCCceEEEEEeccC
Confidence 35578998 8899999533
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=6.78 E-value=2.3e+02 Score=33.51 Aligned_cols=191 Identities=15% Similarity=0.117 Sum_probs=100.3
Q ss_pred CCccEEEeeeccccCCCCCCcccccchhhHHHHH-HhCCCcEEEEeeccccccCCCcceeEEEEEecCCCCCccceeEee
Q 040336 697 MKFTYVVSCQLLGALKTSKDPRDRRRYNDILNLM-IMYPSLRVAYIDEREEFVNGRSHIFYYSVLLKGGNSYNTEIYRIK 775 (1211)
Q Consensus 697 ~KF~~vvs~Q~y~~~~~~~~~~~~~~~~~i~~L~-~~~p~lrvayide~~~~~~~~~~~~yyS~Li~~~~~~~~~~yrik 775 (1211)
.+.+.||.+ |.. ++. +.+-++.++ +.||+..|--+|.-. + ++.. .. ++.....+..+.-|+
T Consensus 375 ~~vsiii~~--yn~---~~~-----l~~~l~s~~~q~~~~~eiivvdd~S-~-d~t~--~~----~~~~~~~~~~i~~~~ 436 (625)
T 2z86_A 375 PLVSIYIPA--YNC---SKY-----IVRCVESALNQTITDLEVCICDDGS-T-DDTL--RI----LQEHYANHPRVRFIS 436 (625)
T ss_dssp CSEEEEEEE--SSC---TTT-----HHHHHHHHHSSSCCSEEEEEEEESC-S-SSHH--HH----HHHHHTTCTTEEEEE
T ss_pred CeEEEEEeC--CCC---HHH-----HHHHHHHHHhCcCCCeEEEEEECcC-C-hhHH--HH----HHHHHhhCCcEEEEe
Confidence 467777764 421 111 235667666 479999999988732 1 1111 11 110000011111122
Q ss_pred cCCCCCcCCCCCCccccchhhhccccchhhccCCccchH-HHHHhhhhhHHHhccCCCCCCCceEecccceeeccccccc
Q 040336 776 LPGPPTDIGEGKPENQNHAIIFTRGEALQTIDMNQDNYF-EEAFKMRNVLEEFLKSPSGQREPTILGLREHIFTGSVSSL 854 (1211)
Q Consensus 776 LpG~~pilGeGKpeNQNhAiiF~RGe~lQ~IDmNQDnYl-eE~lKmrnlL~ef~~~~~g~~~~~I~G~RE~iFs~~v~~L 854 (1211)
+. | .|++.+-|.++-.++|||+-.+|. |..+ .++|+ .+++.+++.. .+.+++.....+.++-..+
T Consensus 437 -~~-n----~G~~~a~n~g~~~a~g~~i~~ld~--D~~~~~~~l~--~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~ 502 (625)
T 2z86_A 437 -QK-N----KGIGSASNTAVRLCRGFYIGQLDS--DDFLEPDAVE--LCLDEFRKDL----SLACVYTTNRNIDREGNLI 502 (625)
T ss_dssp -EC-C----CCHHHHHHHHHHHCCSSEEEECCT--TCEECTTHHH--HHHHHHHHCT----TCSEEEEEEEEECTTSCEE
T ss_pred -CC-C----CCHHHHHHHHHHhcCCCEEEEECC--CcccChhHHH--HHHHHHHhCC----CeeEEEeeeEEECCCCCEe
Confidence 22 3 379999999999999999988775 4444 33443 5666775533 3556665554444332222
Q ss_pred ccccccchhHHHHHHHHHhhcccceeeeccCCcccccccccccCcccccccccccchhhhccccccccCceeeeEeee
Q 040336 855 ASFMSNQETSFVTISQRILANPLRVRFHYGHSDIFDRIFHITRGGISKASKTINLSEDVFAGMNSTLRGGYITHHEYI 932 (1211)
Q Consensus 855 a~~~a~qE~~F~Tl~qR~la~pl~~r~HYGHPD~~d~~f~~TrGGvSKAsk~lhLsEDIfaG~n~~lRgG~i~h~eYi 932 (1211)
.......+..- .. +...+-.||.=++.|..+..-||.... ....||.--.+.+...| +|.|..-.
T Consensus 503 ~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~r~~~~~~ggfd~~---~~~~eD~dl~~r~~~~g-~~~~~~~~ 567 (625)
T 2z86_A 503 SNGYNWPIYSR----EK-----LTSAMICHHFRMFTARAWNLTEGFNES---ISNAVDYDMYLKLSEVG-PFKHINKI 567 (625)
T ss_dssp EECCCCSSCCH----HH-----HTTSCCCCSCEEEEHHHHTTTTCCCSS---CSSCHHHHHHHHHTTTS-CEEEEEEE
T ss_pred ccCcccccCCH----HH-----HhhcccCCceEEEEHHHHHHhCCCCCc---cCChHHHHHHHHHHHhC-CEEEeCCc
Confidence 21111111100 00 112233456656666666666777643 23569987777776665 88776543
No 10
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=6.21 E-value=69 Score=39.58 Aligned_cols=19 Identities=42% Similarity=0.798 Sum_probs=13.6
Q ss_pred eeeeccccccCceeeecCCcee
Q 040336 1087 HYFGRTILHGGSKYRATGRGFV 1108 (1211)
Q Consensus 1087 ~~~~~~i~~GgAkY~aTGRGF~ 1108 (1211)
+-+..|-.|| |-+|||||.
T Consensus 281 ~v~~~tTv~G---YEGtGrgf~ 299 (671)
T 2zpa_A 281 RTLLTTTVQG---YEGTGRGFL 299 (671)
T ss_dssp EEEEEEEBSS---TTBBCHHHH
T ss_pred eEEEEecCCc---CCCcCcccc
Confidence 3344455666 999999994
Done!