Query 040336
Match_columns 1211
No_of_seqs 155 out of 334
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 11:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040336.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040336hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 16.1 27 0.0019 35.0 2.1 34 786-819 94-130 (328)
2 d1omza_ c.68.1.15 (A:) Alpha-1 11.9 61 0.0044 29.2 3.1 57 785-848 67-123 (265)
3 d1x4la1 g.39.1.3 (A:8-36) Four 10.0 35 0.0026 24.2 0.5 8 1095-1102 11-18 (29)
4 d1wixa_ a.40.3.1 (A:) Hook hom 9.4 55 0.004 31.1 1.8 57 587-659 29-86 (164)
5 d1x68a1 g.39.1.3 (A:8-36) Four 8.8 46 0.0034 23.5 0.7 8 1095-1102 11-18 (29)
6 d1omza_ c.68.1.15 (A:) Alpha-1 7.7 56 0.0041 29.4 1.0 15 569-583 1-15 (265)
7 d1r0va1 c.52.2.1 (A:62-139) Di 7.2 1.6E+02 0.011 24.0 3.4 30 724-760 44-73 (78)
8 d1sq5a_ c.37.1.6 (A:) Pantothe 7.1 2.2E+02 0.016 29.2 5.5 50 813-875 57-106 (308)
9 d1r9wa_ d.89.1.2 (A:) Replicat 7.1 49 0.0035 31.3 0.2 42 907-952 39-81 (145)
10 d2imra1 b.92.1.11 (A:34-90,A:3 6.6 28 0.0021 29.2 -1.5 45 882-940 33-77 (77)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.12 E-value=27 Score=35.03 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=24.6
Q ss_pred CCCccccchhhhccccchhhccCC---ccchHHHHHh
Q 040336 786 GKPENQNHAIIFTRGEALQTIDMN---QDNYFEEAFK 819 (1211)
Q Consensus 786 GKpeNQNhAiiF~RGe~lQ~IDmN---QDnYleE~lK 819 (1211)
|.+...|.++--++||||-.+|.. ..++||+.++
T Consensus 94 G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~ 130 (328)
T d1xhba2 94 GLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLA 130 (328)
T ss_dssp CHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHH
T ss_pred cchHHHHHHHHhhhcceeeecCcccccChhHHHHHHH
Confidence 566777888888888888887765 5566665543
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.86 E-value=61 Score=29.17 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=38.1
Q ss_pred CCCCccccchhhhccccchhhccCCccchHHHHHhhhhhHHHhccCCCCCCCceEecccceeec
Q 040336 785 EGKPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLKSPSGQREPTILGLREHIFT 848 (1211)
Q Consensus 785 eGKpeNQNhAiiF~RGe~lQ~IDmNQDnYleE~lKmrnlL~ef~~~~~g~~~~~I~G~RE~iFs 848 (1211)
.|+..+-|+|+-..+||++=.+|.. |=+-+++|+ .+++.+++.. ...+.|.+-+...
T Consensus 67 ~g~~~a~n~~~~~a~ge~i~~lD~D-~~~~~~~l~--~l~~~~~~~~----~~~v~~~~~~~~~ 123 (265)
T d1omza_ 67 ANKMRNRLQVFPEVETNAVLMVDDD-TLISAQDLV--FAFSIWQQFP----DQIIGFVPRKHVS 123 (265)
T ss_dssp SCCGGGGGSCCTTCCSSEEEEECTT-EEECHHHHH--HHHHHHTTST----TSEEESCEEEEEE
T ss_pred CCchhhhhhhHHhCCcCEEEEeCcc-cCCCHHHHH--HHHHHHHhCC----Ccceecccccccc
Confidence 3888899999999999999999964 333355555 5667776533 2344454444443
No 3
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.01 E-value=35 Score=24.18 Aligned_cols=8 Identities=50% Similarity=0.937 Sum_probs=6.8
Q ss_pred ccCceeee
Q 040336 1095 HGGSKYRA 1102 (1211)
Q Consensus 1095 ~GgAkY~a 1102 (1211)
+||+||++
T Consensus 11 ~gg~kyis 18 (29)
T d1x4la1 11 LGGTKYIS 18 (29)
T ss_dssp SSSCSCEE
T ss_pred cCCceEEE
Confidence 69999986
No 4
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.41 E-value=55 Score=31.10 Aligned_cols=57 Identities=23% Similarity=0.453 Sum_probs=41.7
Q ss_pred chhhhhcccCCcccHHHHHHHhCChhhh-hHHhhhCCCCCCCCCcchhhhhhccccccccchhhhhhhhhchHH
Q 040336 587 SVDELYKENEDGISTLFYLQKIYPDEWM-NFQKRINDPKLNYSDDDKKEATRHWVSYRGQTLSRTVRGMMYYKH 659 (1211)
Q Consensus 587 s~~el~~e~~d~vt~L~YL~~~~p~EW~-nF~er~k~~~~~~~~~~~~~~~r~WAS~RgQTL~RTV~Gmm~Y~~ 659 (1211)
+.+||. ||+.+-+-|.+|-|+-.. ..++|++++. ...|+ .|-|.|-+-+++|+.|.+
T Consensus 29 ~~~dL~----DGv~l~~iL~qIdP~~f~~~~~~~~~~d~-----------~~nw~-lr~~NLk~i~~~i~~Yy~ 86 (164)
T d1wixa_ 29 DVKQLT----NGVTMAQVLHQIDVAWFSESWLSRIKDDV-----------GDNWR-IKASNLKKVLHGITSYYH 86 (164)
T ss_dssp SHHHHT----TSHHHHHHHHHHCTTTSCHHHHTTCCSGG-----------GGCSH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHh----chHHHHHHHHHhCccccCchhhhcccccc-----------cccHH-HHHHHHHHHHHHHHHHHH
Confidence 455665 999999999999997554 4455555321 23464 388999999999999864
No 5
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.79 E-value=46 Score=23.52 Aligned_cols=8 Identities=25% Similarity=0.463 Sum_probs=6.7
Q ss_pred ccCceeee
Q 040336 1095 HGGSKYRA 1102 (1211)
Q Consensus 1095 ~GgAkY~a 1102 (1211)
.|||||++
T Consensus 11 ~gG~k~is 18 (29)
T d1x68a1 11 LTGAKFIC 18 (29)
T ss_dssp TTTCCEEE
T ss_pred cCCceEEE
Confidence 58999986
No 6
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.69 E-value=56 Score=29.43 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=12.7
Q ss_pred cccceeeeccccccc
Q 040336 569 DMISFSVLTPYYRED 583 (1211)
Q Consensus 569 ~M~sfsvltP~Y~E~ 583 (1211)
+|=||||++|-|+|.
T Consensus 1 ~~~~~tvii~tyn~~ 15 (265)
T d1omza_ 1 ALDSFTLIMQTYNRT 15 (265)
T ss_dssp CTTCEEEEEEESSCH
T ss_pred CCCcEEEEEEcCCCH
Confidence 477999999999863
No 7
>d1r0va1 c.52.2.1 (A:62-139) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.17 E-value=1.6e+02 Score=23.97 Aligned_cols=30 Identities=37% Similarity=0.576 Sum_probs=24.5
Q ss_pred hhHHHHHHhCCCcEEEEeeccccccCCCcceeEEEEE
Q 040336 724 NDILNLMIMYPSLRVAYIDEREEFVNGRSHIFYYSVL 760 (1211)
Q Consensus 724 ~~i~~L~~~~p~lrvayide~~~~~~~~~~~~yyS~L 760 (1211)
++|..-.+.|..||.|-+|| | .+.+||.|-
T Consensus 44 eeiaekarnfdelrlavvde-e------seityfrvy 73 (78)
T d1r0va1 44 EEIAEKARNFDELRLAVVDE-E------SEITYFRVY 73 (78)
T ss_dssp HHHHHHTTTCSSCEEEEECT-T------CCEEEEEEE
T ss_pred HHHHHHhcCchheeeeeecc-c------ceEEEEEEe
Confidence 88888899999999999998 2 246888663
No 8
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=7.13 E-value=2.2e+02 Score=29.18 Aligned_cols=50 Identities=32% Similarity=0.589 Sum_probs=34.5
Q ss_pred hHHHHHhhhhhHHHhccCCCCCCCceEecccceeecccccccccccccchhHHHHHHHHHhhc
Q 040336 813 YFEEAFKMRNVLEEFLKSPSGQREPTILGLREHIFTGSVSSLASFMSNQETSFVTISQRILAN 875 (1211)
Q Consensus 813 YleE~lKmrnlL~ef~~~~~g~~~~~I~G~RE~iFs~~v~~La~~~a~qE~~F~Tl~qR~la~ 875 (1211)
|.+++.+.....++|-... +.+.|-||| .+|++| ||| +||....+..|+.
T Consensus 57 ~~~~~~~~~~~~~~fl~~~-~~k~P~iIG-----IaG~sg------SGK-STla~~L~~lL~~ 106 (308)
T d1sq5a_ 57 YISSNLRRQAVLEQFLGTN-GQRIPYIIS-----IAGSVA------VGK-STTARVLQALLSR 106 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCEEEE-----EEECTT------SSH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccc-CCCCCEEEE-----EeCCCC------CCC-cHHHHHHHHHHhh
Confidence 4578888888889997654 456788888 555554 455 6677777777763
No 9
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=7.07 E-value=49 Score=31.29 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=27.9
Q ss_pred cccchhhhccccccccCceeeeEeeeeeccc-ccccccccccchhhc
Q 040336 907 INLSEDVFAGMNSTLRGGYITHHEYIQVGKG-RDVGMNQISLFEAKV 952 (1211)
Q Consensus 907 lhLsEDIfaG~n~~lRgG~i~h~eYiqcGKG-RD~G~~qI~~Fe~Ki 952 (1211)
-+++||++.|.+.+|+ .||+|+|+=.- -+.|+-.....+-|.
T Consensus 39 ~gv~~~l~ea~k~lLq----~hc~y~~~~~~~~~~g~~~L~Ll~Fk~ 81 (145)
T d1r9wa_ 39 FGVNPTIAEGFKTLIQ----PFILYAHIQCLDCKWGVLILALLRYKC 81 (145)
T ss_dssp EEECHHHHHTHHHHHG----GGEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEeCHHHHHHHHHHHH----hheeEEEEEeccCCCceEEEEEEEEec
Confidence 4678999999999999 89999885311 122333444444444
No 10
>d2imra1 b.92.1.11 (A:34-90,A:399-418) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.62 E-value=28 Score=29.23 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=34.1
Q ss_pred eccCCcccccccccccCcccccccccccchhhhccccccccCceeeeEeeeeecccccc
Q 040336 882 HYGHSDIFDRIFHITRGGISKASKTINLSEDVFAGMNSTLRGGYITHHEYIQVGKGRDV 940 (1211)
Q Consensus 882 HYGHPD~~d~~f~~TrGGvSKAsk~lhLsEDIfaG~n~~lRgG~i~h~eYiqcGKGRD~ 940 (1211)
.-|||+.+-|... |=-|.+-+|-.+++|.|.+=|.+|. -|-|||+
T Consensus 33 a~gdP~~L~ra~~-------------~~~~rv~G~~i~flRRGE~W~e~y~-W~~~Rdl 77 (77)
T d2imra1 33 AAGHPDELRRQYP-------------HAAEERAGAVIAFLRRGETWQEGFR-WELSRDL 77 (77)
T ss_dssp EEECHHHHHHHCT-------------TCEEEECCSEESCCSTTSBCCGGGB-GGGCCCC
T ss_pred ecCChHHHHHhcc-------------cccceeeCceeeeeeccchhhhhee-eccccCC
Confidence 3588888877653 3346666778889999999998885 6888885
Done!