BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040338
(385 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 148/347 (42%), Positives = 190/347 (54%), Gaps = 83/347 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
MK C SL+S+PIARK+HAQLI L SSIFLQ LI D YRVF I +
Sbjct: 11 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70
Query: 50 FTYNTMI------------------------------------NGGVRCL-----CVGNI 68
+++NTMI NG + +G +
Sbjct: 71 YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYL 130
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW------- 121
K+AL LHG +KF F D + S +DM++KCGA+D+A+ F R NPSLFCW
Sbjct: 131 KLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGY 190
Query: 122 -KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
K+G ++ L +F KMPERD VSWNTMISIL++HGFG ETL TF+E+WN GF +SM YA
Sbjct: 191 SKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYA 250
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ SA S+YDLEWG HLH+R+V MEP LDV+ G GLIDMY KCG +ES+ Q+
Sbjct: 251 SVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCG--RLESARQV----- 303
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
F+ ++ N +SW LI +QAG E+ F
Sbjct: 304 ---------------FDGLTEHNAVSWTSLIGGVAQAGFQEEALVLF 335
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/350 (32%), Positives = 175/350 (50%), Gaps = 48/350 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
CL +I + LH S +A + + M+ KCG V A AF M + W
Sbjct: 357 CLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISW 416
Query: 122 KFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I + F KMPER+++SWN+M++ + G+ E L +I++ G
Sbjct: 417 TAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ ++T+ SA A + L G + ++ + G S++
Sbjct: 477 TDWITFSTSISACADLAVLILGNQILAQAEKL----------------------GFSSNV 514
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+ ++VTMY+ G ++A F + +N++SW +++ ++Q G K F
Sbjct: 515 SVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNI 574
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
+VS+LSGCSHSG V++G++YF +M K + +FVCMVDLLG +G L +
Sbjct: 575 GNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQ 634
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
AK LI++MP KP IWGALL AC H NTKLAEL ++NLL+LD + GS
Sbjct: 635 AKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGS 684
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 98/254 (38%), Gaps = 56/254 (22%)
Query: 45 GPRYLFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKS 92
G L T+ M N G R C + +++ HLH + + D
Sbjct: 227 GAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCG 286
Query: 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR 152
IDM+ KCG ++ A +F + E + VSW ++I + +
Sbjct: 287 LIDMYAKCGRLESARQ----------------------VFDGLTEHNAVSWTSLIGGVAQ 324
Query: 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
GF E L F ++ AT S D+ G LH+ + V V
Sbjct: 325 AGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPV 384
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
+ L+ MY KC G KA+ AFELM R++ISW +I+A
Sbjct: 385 ANALVTMYAKC----------------------GDVWKANHAFELMPIRDIISWTAMITA 422
Query: 273 FSQAGVLEKPRFFF 286
FSQAG +EK R +F
Sbjct: 423 FSQAGDVEKAREYF 436
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 137/332 (41%), Gaps = 57/332 (17%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C + +I +A LH + S + ++M+ CG + A F ++ P+++
Sbjct: 13 ECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYS 72
Query: 121 WKF--------GIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W G +R +F+KMPERD VSWN+M+S G+
Sbjct: 73 WNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMS---------------------GY 111
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG------- 224
+ L AT A S+ L+ LH + +D V + ++DMY+KCG
Sbjct: 112 FHNGELEAT-IKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQK 170
Query: 225 --CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
C S+ +++ Y++ GS +KA F M R+ +SW +IS SQ G +
Sbjct: 171 VFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAET 230
Query: 283 RFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFT--YTCYFVC-MVDL 326
F + S+LS C+ + G H + + Y C ++D+
Sbjct: 231 LNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDM 290
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G L A+++ D + ++ V W +L+G
Sbjct: 291 YAKCGRLESARQVFDGL-TEHNAVSWTSLIGG 321
>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 767
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 152/370 (41%), Positives = 193/370 (52%), Gaps = 106/370 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVF-------- 41
MK C SL+S+PIARK+HAQLI L SSIFLQ LI D YRVF
Sbjct: 1 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 60
Query: 42 ----------CDIG-------------PRYLFTYNTMING----------------GVR- 61
D G R ++N+M++G VR
Sbjct: 61 YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSMVRD 120
Query: 62 CLCV----------------GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105
C CV G +K+AL LHG +KF F D + S +DM++KCGA+D+
Sbjct: 121 CCCVPDPFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDF 180
Query: 106 AESAFLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFG 156
A+ F R NPSLFCW K+G ++ L +F KMPERD VSWNTMISIL++HGFG
Sbjct: 181 AQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFG 240
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
ETL TF+E+WN GF +SM YA+ SA S+YDLEWG HLH+R+V MEP LDV+ G GL
Sbjct: 241 AETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGL 300
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
IDMY KCG +ES+ Q+ F+ ++ N +SW LI +QA
Sbjct: 301 IDMYAKCG--RLESARQV--------------------FDGLTEHNAVSWTSLIGGVAQA 338
Query: 277 GVLEKPRFFF 286
G E+ F
Sbjct: 339 GFQEEALVLF 348
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 153/333 (45%), Gaps = 49/333 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
CL +I + LH S +A + + M+ KCG V A AF M + W
Sbjct: 370 CLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISW 429
Query: 122 KFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I + F KMPER+++SWN+M++ + G+ E L +I++ G
Sbjct: 430 TAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 489
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ ++T+ SA A + L G + ++ + G S++
Sbjct: 490 TDWITFSTSISACADLAVLILGNQILAQAEKL----------------------GFSSNV 527
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
+ ++VTMY+ G ++A F + +N++SW +++ ++Q G K + +
Sbjct: 528 SVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRK------VIEIF 581
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ G V Y + ++ DLLG +G L +AK LI++MP KP IW
Sbjct: 582 EKMLNIGNVPDQISYVSVLS------------DLLGRAGQLEQAKNLINQMPFKPNAAIW 629
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
GALL AC H NTKLAEL ++NLL+LD + GS
Sbjct: 630 GALLAACRIHGNTKLAELAVKNLLELDAEGPGS 662
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 98/254 (38%), Gaps = 56/254 (22%)
Query: 45 GPRYLFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKS 92
G L T+ M N G R C + +++ HLH + + D
Sbjct: 240 GAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCG 299
Query: 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR 152
IDM+ KCG ++ A +F + E + VSW ++I + +
Sbjct: 300 LIDMYAKCGRLESARQ----------------------VFDGLTEHNAVSWTSLIGGVAQ 337
Query: 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
GF E L F ++ AT S D+ G LH+ + V V
Sbjct: 338 AGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPV 397
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
+ L+ MY KC G KA+ AFELM R++ISW +I+A
Sbjct: 398 ANALVTMYAKC----------------------GDVWKANHAFELMPIRDIISWTAMITA 435
Query: 273 FSQAGVLEKPRFFF 286
FSQAG +EK R +F
Sbjct: 436 FSQAGDVEKAREYF 449
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 141/333 (42%), Gaps = 36/333 (10%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C + +I +A LH + S + ++M+ CG + A F ++ P+++
Sbjct: 3 ECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYS 62
Query: 121 WKF--------GIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W G +R +F+KMPERD VSWN+M+S +G T+ F+ +
Sbjct: 63 WNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSMVRDCC 122
Query: 172 GLSSML-YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG------ 224
+ ++ A S+ L+ LH + +D V + ++DMY+KCG
Sbjct: 123 CVPDPFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQ 182
Query: 225 ---CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
C S+ +++ Y++ GS +KA F M R+ +SW +IS SQ G +
Sbjct: 183 KVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAE 242
Query: 282 PRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFT--YTCYFVC-MVD 325
F + S+LS C+ + G H + + Y C ++D
Sbjct: 243 TLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLID 302
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+ G L A+++ D + ++ V W +L+G
Sbjct: 303 MYAKCGRLESARQVFDGL-TEHNAVSWTSLIGG 334
>gi|255539304|ref|XP_002510717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551418|gb|EEF52904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 742
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 182/390 (46%), Gaps = 119/390 (30%)
Query: 5 GSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFTY- 52
G S+PIARK+HAQLIST L SIFL L D RVF D+ R +F+Y
Sbjct: 2 GHCSSMPIARKLHAQLISTGLYISIFLHNHLLNMYLNCHLTHDACRVFADMTFRNVFSYN 61
Query: 53 ------------------------------NTMINGGVR--------------------- 61
N+M++G R
Sbjct: 62 TMITGLSKAEQIDKAKKVFDEMPERDSVSWNSMMSGYFRNGKYEEVVKVFVLMIRNFTCI 121
Query: 62 ------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
C +G K+A+ LHGL +KF F SD+SI S + M++KCGA YA+
Sbjct: 122 VNLLSFSCAMKACGALGCFKLAIQLHGLFEKFDFGSDKSIETSVMGMYIKCGAFTYADRV 181
Query: 110 FLRMLNPSLFCWK---------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
FL + PSLFC+ +G+ + L +F ++PERD VSW+T+ISIL+RHGFG TL
Sbjct: 182 FLGIRQPSLFCFNSMLYCYSNSYGVGKALDLFNRIPERDSVSWSTIISILSRHGFGVPTL 241
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
FIE+W GF +SM +A SA S++DLEWG HLH+R++ E LD +VG+GL+ MY
Sbjct: 242 SMFIEMWTQGFRPNSMTFACVLSACTSIHDLEWGAHLHARIIRKEIILDDYVGNGLVYMY 301
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KC G + A F ++ N +SW LI+ ++ G+ E
Sbjct: 302 AKC----------------------GHLKFARRVFNSLTEHNAVSWTSLINGVARCGLKE 339
Query: 281 KPRFF-------------FFFVSLLSGCSH 297
+ F F ++L CSH
Sbjct: 340 EALLLFNKMREVLVALDEFTFATVLKVCSH 369
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/449 (26%), Positives = 184/449 (40%), Gaps = 116/449 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDY-------------------RVF 41
+ AC S+ L +HA++I ++I DDY RVF
Sbjct: 263 LSACTSIHDLEWGAHLHARIIRK--------EIILDDYVGNGLVYMYAKCGHLKFARRVF 314
Query: 42 CDIGPRYLFTYNTMINGGVRC-------LCVGNIKMAL---------------------- 72
+ ++ ++ING RC L ++ L
Sbjct: 315 NSLTEHNAVSWTSLINGVARCGLKEEALLLFNKMREVLVALDEFTFATVLKVCSHPNFNF 374
Query: 73 ---HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII--- 126
LH L K S ++ + I M+ KCG A+ F M ++ W I
Sbjct: 375 TGRQLHALTTKTGMGSIVTVGNALITMYSKCGDTQKADCVFKMMPVRNIISWTSMITAFS 434
Query: 127 ------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ F KMPER++++WN+MIS+ +HGF L ++ + + +AT
Sbjct: 435 QAGYFRKAQACFNKMPERNVITWNSMISMYIQHGFQEWGLKLYVRMQRERIAPDDITFAT 494
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+ SA A + L+ G + ++ + G S + + +LVT
Sbjct: 495 SISACADLAMLKLGNQIVAQAEKL----------------------GFGSDVSVANSLVT 532
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGP 300
MY+ G ++A AF+L+S +N++SW +I+ ++Q G G
Sbjct: 533 MYSRCGQIEEARKAFDLVSMKNLVSWNSMIAGYAQNG--------------------HGR 572
Query: 301 VTKGKHYFTAMAKFTYT----CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V F M + Y Y + DLLG +GLL +AK LID+MP P +WGALL
Sbjct: 573 V--AIEVFKNMLEMEYIPDHISYLSVLSDLLGRAGLLEQAKNLIDDMPFTPNGDVWGALL 630
Query: 357 GACCSHYNTKLAELVMRNLLQLDVKVFGS 385
GAC H N+KLAE ++N +LDV GS
Sbjct: 631 GACKIHCNSKLAEYAVKNSQELDVDNSGS 659
>gi|147861799|emb|CAN81086.1| hypothetical protein VITISV_027167 [Vitis vinifera]
Length = 1756
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 118/172 (68%), Gaps = 11/172 (6%)
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-IIR 127
++KKF F D + S +DM++KCGA+D+A+ F R NPSLFCW K+G + +
Sbjct: 1542 VLKKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTSNPSLFCWNSMIYGYSKYGSVKK 1601
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
L +F KMPERD VSWNTMISIL++HGFG ETL F+E+W GF +SM YA+ SA +
Sbjct: 1602 ALELFAKMPERDTVSWNTMISILSQHGFGAETLNMFLEMWKQGFRPNSMTYASVLSACTN 1661
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+YDLEWG HLH+R+V MEP LDV+ GLIDMY KCG +ES+ Q+ L
Sbjct: 1662 IYDLEWGAHLHARIVRMEPRLDVYARCGLIDMYAKCG--RLESARQVFDGLT 1711
>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 663
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 183/382 (47%), Gaps = 83/382 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C VG I++A LHGL +K+ F +++ I S IDM++KC A+ AE FLR+ PSLF W
Sbjct: 3 CSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSW 62
Query: 122 K---FGIIRLLIM------FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+G +L M F++MPERD VSWNT+IS + HG ++L TF+E+W G
Sbjct: 63 NCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQ 122
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+SM YA+ SA A++YD +WG HLH+R+V +EP LDV VG+GL+DMY KCG I++S
Sbjct: 123 PNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGL--IDASK 180
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----- 287
++ F + N+++W LIS + G E+ F+
Sbjct: 181 RV--------------------FNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKD 220
Query: 288 --------FVSLLSGCSHSGPVTKGK--HYFTA---------MAKFTYTCYFVC------ 322
++L C ++ G+ H FT + T + Y C
Sbjct: 221 CVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKA 280
Query: 323 -----------------MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH--- 362
M+ SG + A+ + MP + + W A+LGA C +
Sbjct: 281 SLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPER-NVISWNAMLGAYCQNSFW 339
Query: 363 -YNTKLAELVMRNLLQLDVKVF 383
KL L++R ++ D F
Sbjct: 340 EEGLKLYILMLRQEVRPDWITF 361
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 204/455 (44%), Gaps = 93/455 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLIST-----CLISSIFLQ------LIDDDYRVFCDIGPRYL 49
+ AC ++ + +HA+++ L+ + + LID RVF + +
Sbjct: 132 LSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREHNV 191
Query: 50 FTYNTMING---------------GVRCLCV-----------------GNIKMALHLHGL 77
T+ ++I+G +R CV NI + LHG
Sbjct: 192 VTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGF 251
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII---------RL 128
K S + +++ M+ KCG + A AF M + W I R
Sbjct: 252 TVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERA 311
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
F +MPER+++SWN M+ ++ F E L +I + + + T A + +
Sbjct: 312 RDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSEL 371
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+ G + S+ V + G+ S + + + +T+Y+ G
Sbjct: 372 AISKLGTQILSQAVKV----------------------GLGSDVSVVNSAITLYSRCGRI 409
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVSLLSG 294
++A F+ + +N+ISW ++ ++Q G V+E KP + +++LSG
Sbjct: 410 EEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITY-IAILSG 468
Query: 295 CSHSGPVTKGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CSHSG V + K++F +M K F + +FVCMVDL G +GLL A +ID+MP KP
Sbjct: 469 CSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNAS 528
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
IWGALL AC H++T++AEL M+NLL+L+ + F S
Sbjct: 529 IWGALLSACRIHHDTEMAELAMKNLLELNTENFES 563
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 46/236 (19%)
Query: 53 NTMINGGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
N+M V C + + HLH + + D + +DM+ KCG +D ++
Sbjct: 124 NSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKR-- 181
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+F + E ++V+W ++IS + G E F ++
Sbjct: 182 --------------------VFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDC 221
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ + + AT ++ G LH V + V VG+ + MY KC
Sbjct: 222 VIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKC------- 274
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G +KA LAFE M+ ++ISW +I++FS +G +E+ R +F
Sbjct: 275 ---------------GDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYF 315
>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 960
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 164/333 (49%), Gaps = 43/333 (12%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ ++A+ LH LV K F + I S + M+VKCG VD AE+ F + PSLFCW
Sbjct: 156 CGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCW 215
Query: 122 K---------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+G + L +F +MPERD VSWNT+ISI ++HGFG + L F+E+ N GF
Sbjct: 216 NSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFS 275
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC------- 225
+ M Y + SA AS DL+WG HLH+R++ ME SLD+ G+GLIDMY KCGC
Sbjct: 276 PNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRV 335
Query: 226 -NGIESSIQIG-KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
+ I +L+T G + A + F M R +++ ++ GV P
Sbjct: 336 FKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTI--LGVCSGPD 393
Query: 284 F-----FFFFVSLLSGCSHSGPVTKGKHYFTAMAK---------------FTYTCYFVCM 323
+ ++ SG S PV G T AK T + M
Sbjct: 394 YASTGELLHGYTIKSGMGSSAPV--GNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAM 451
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ SG +G+A+ D MP + V W ++L
Sbjct: 452 ITAFSRSGDIGKARGYFDMMPER-NIVTWNSML 483
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 50/335 (14%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII------- 126
LHG K S + + I M+ KCG D A+ F M + W I
Sbjct: 401 LHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGD 460
Query: 127 --RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+ F MPER++V+WN+M+S ++GF E L ++ + ++G + + T+ A
Sbjct: 461 IGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRA 520
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A + ++ G + + SL+V + ++VTMY+
Sbjct: 521 CADLAIVKLGMQVVTHATKFGLSLNV----------------------SVANSIVTMYSR 558
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVS 290
G ++A F+ + +++ISW +++AF+Q G V++ KP + VS
Sbjct: 559 CGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISY-VS 617
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LSGCSH G V +GKHYF +M + +F CMVDLLG +GLL +AK LI+ MP K
Sbjct: 618 VLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFK 677
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
P +W ALLG+C H++ +LAE + L++LDV+
Sbjct: 678 PNATVWSALLGSCRVHHDLRLAETAAKKLMELDVE 712
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 124/303 (40%), Gaps = 45/303 (14%)
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI----------MFQKMPER--DLVSW 143
M+ CG A F + ++F W +IR L+ +F +MP R D VSW
Sbjct: 52 MYSNCGLTHDAFQVFQETHHRNIFTWN-TMIRALVSSSRMSDAEKLFDEMPVRVKDSVSW 110
Query: 144 NTMISILTRHGF---GFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHLHS 199
TMIS +++GF FET I N G + + A S+ D LH+
Sbjct: 111 TTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHA 170
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG---------KALVTMYAEGGSTQK 250
V + ++ + + ++ MY+KCG + ++ +++ Y++ K
Sbjct: 171 LVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYK 230
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEK--------------PRFFFFFVSLLSGCS 296
A F M R+ +SW LIS FSQ G + P F + S+LS C+
Sbjct: 231 ALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPN-FMTYGSVLSACA 289
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ + G H + + ++ V ++D+ G L AK++ + + W
Sbjct: 290 STSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDH-ISWN 348
Query: 354 ALL 356
+L+
Sbjct: 349 SLI 351
>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 836
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 172/389 (44%), Gaps = 85/389 (21%)
Query: 30 FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESI 89
F+ ++ D + P F+Y + C C+ + + AL LH V K + + I
Sbjct: 126 FMSMLRDSNHDIQNCDP---FSYTCTMKA---CGCLASTRFALQLHAHVIKLHLGAQTCI 179
Query: 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---------FGIIRLLIMFQKMPERDL 140
S +DM++KCGA+ AE+ FL + +PSLFCW +G L +F +MPERD
Sbjct: 180 QNSLVDMYIKCGAITLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDH 239
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSWNT+IS+ +++G G L TF+E+ N GF + M Y + SA AS+ DL+WG HLH+R
Sbjct: 240 VSWNTLISVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHAR 299
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
++ ME SLD F+GSGLIDMY KCGC + + F +
Sbjct: 300 ILRMEHSLDAFLGSGLIDMYAKCGCLALARRV----------------------FNSLGE 337
Query: 261 RNMISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLSGCS----------- 296
+N +SW LIS +Q G+ + F ++L CS
Sbjct: 338 QNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILGVCSGQNYAATGELL 397
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVC-----------------------MVDLLGLSGLL 333
H + G F + T Y C M+ +G +
Sbjct: 398 HGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQNGDI 457
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
A++ D MP + + W ++L H
Sbjct: 458 DRARQCFDMMPER-NVITWNSMLSTYIQH 485
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 174/397 (43%), Gaps = 67/397 (16%)
Query: 10 LPIARKI------HAQLISTCLISSIF-LQLIDDDYRVFCDIGPRYL----FTYNTMING 58
L +AR++ Q+ TCLIS + L DD +F + + FT T++
Sbjct: 325 LALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILG- 383
Query: 59 GVRCLCVGNIKMALH--LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP 116
+C G A LHG K S + + I M+ +CG + A AF M
Sbjct: 384 ----VCSGQNYAATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLR 439
Query: 117 SLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
W I R F MPER++++WN+M+S +HGF E + ++ +
Sbjct: 440 DTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMR 499
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ + +AT+ A A + ++ G + S V G
Sbjct: 500 SKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKF----------------------G 537
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
+ S + + ++VTMY+ G ++A F+ + +N+ISW +++AF+Q G+ K
Sbjct: 538 LSSDVSVANSIVTMYSRCGQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKA----- 592
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+ + K + Y + DLLG +GLL +AK LID MP KP
Sbjct: 593 -------------IETYEDMLRTECKPDHISYVAVLSDLLGRAGLLDQAKNLIDGMPFKP 639
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+WGALLGAC H+++ LAE + L++L+V+ G
Sbjct: 640 NATVWGALLGACRIHHDSILAETAAKKLMELNVEDSG 676
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 142/348 (40%), Gaps = 62/348 (17%)
Query: 42 CDIG--PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
C++G P ++ TY ++++ C + ++K HLH + + D + IDM+ K
Sbjct: 266 CNLGFKPNFM-TYGSVLSA---CASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAK 321
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
CG + A +F + E++ VSW +IS + + G +
Sbjct: 322 CGCLALARR----------------------VFNSLGEQNQVSWTCLISGVAQFGLRDDA 359
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV--GSGLI 217
L F ++ L AT + G LH + + +D FV G+ +I
Sbjct: 360 LALFNQMRQASVVLDEFTLATILGVCSGQNYAATGELLHGYAI--KSGMDSFVPVGNAII 417
Query: 218 DMYLKCGCNGIESSIQIGK----------ALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
MY +CG + ++S+ A++T +++ G +A F++M RN+I+W
Sbjct: 418 TMYARCG-DTEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWN 476
Query: 268 VLISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK 313
++S + Q G E KP + F S + C+ + G + + K
Sbjct: 477 SMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTFATS-IRACADLATIKLGTQVVSHVTK 535
Query: 314 FTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
F + +V + G + EA+K+ D + K + W A++ A
Sbjct: 536 FGLSSDVSVANSIVTMYSRCGQIKEARKVFDSIHVK-NLISWNAMMAA 582
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 94/397 (23%), Positives = 156/397 (39%), Gaps = 107/397 (26%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYLF 50
K CGS PIARK+HAQLI + L +S+FL ++DD +RVF + +F
Sbjct: 15 KLCGSP---PIARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIF 71
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T+NTM++ +F S G + AE+ F
Sbjct: 72 TWNTMLHA-----------------------FFDS---------------GRMREAENLF 93
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW--- 167
M P + RD VSW TMIS ++G ++ TF+ +
Sbjct: 94 DEM--PHIV------------------RDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDS 133
Query: 168 NHGF-GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
NH Y A + + LH+ V+ + + + L+DMY+KCG
Sbjct: 134 NHDIQNCDPFSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAI 193
Query: 227 GIESSIQIG---------KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+ ++ + +++ Y++ +A F M R+ +SW LIS FSQ G
Sbjct: 194 TLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYG 253
Query: 278 --------VLE------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC- 322
+E KP F + S+LS C+ + G H + + ++
Sbjct: 254 HGIRCLSTFVEMCNLGFKPNFMTYG-SVLSACASISDLKWGAHLHARILRMEHSLDAFLG 312
Query: 323 --MVDLLGLSGLLGEAKKLIDEMPSKP----TCVIWG 353
++D+ G L A+++ + + + TC+I G
Sbjct: 313 SGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCLISG 349
>gi|356562121|ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 921
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 139/258 (53%), Gaps = 37/258 (14%)
Query: 30 FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESI 89
F+ ++ D + P F+Y + C C+ + ++AL LH V K + + I
Sbjct: 126 FMSMLRDSNHDIQNCDP---FSYTCTMKA---CGCLASTRLALQLHAHVIKLHLGAQTCI 179
Query: 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---------FGIIRLLIMFQKMPERDL 140
S +DM++KCGA+ AE+ FL + +PSLFCW +G L +F +MPERD
Sbjct: 180 QNSLVDMYIKCGAITLAETIFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDH 239
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSWNT+IS+ +++G G L TF+E+ N GF + M Y + SA AS+ DL+WG HLH+R
Sbjct: 240 VSWNTLISVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHAR 299
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
++ ME SLD F+GSGLIDMY KCGC + A F +
Sbjct: 300 ILRMEHSLDAFLGSGLIDMYAKCGCLAL----------------------ARRVFNSLGE 337
Query: 261 RNMISWMVLISAFSQAGV 278
+N +SW IS +Q G+
Sbjct: 338 QNQVSWTCFISGVAQFGL 355
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 146/320 (45%), Gaps = 49/320 (15%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---------G 124
LHG K S + + I M+ +CG + A AF M W
Sbjct: 397 LHGYAIKSGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQNGD 456
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
I R F MPER++++WN+M+S +HGF E + ++ + + + +AT+ A
Sbjct: 457 IDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTFATSIRA 516
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A + ++ G + S V G+ S + + ++VTMY+
Sbjct: 517 CADLATIKLGTQVVSHVTKF----------------------GLSSDVSVANSIVTMYSR 554
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKG 304
G ++A F+ + +N+ISW +++AF+Q G+ K + L + C
Sbjct: 555 CGQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKA-IETYEAMLRTEC--------- 604
Query: 305 KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
K + Y + DLLG +GLL +AK LID MP KP +WGALLGAC H++
Sbjct: 605 --------KPDHISYVAVLSDLLGRAGLLNQAKNLIDGMPFKPNATVWGALLGACRIHHD 656
Query: 365 TKLAELVMRNLLQLDVKVFG 384
+ LAE + L++L+V+ G
Sbjct: 657 SILAETAAKKLMELNVEDSG 676
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 139/346 (40%), Gaps = 58/346 (16%)
Query: 42 CDIG--PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
C++G P ++ TY ++++ C + ++K HLH + + D + IDM+ K
Sbjct: 266 CNLGFKPNFM-TYGSVLSA---CASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAK 321
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
CG + A +F + E++ VSW IS + + G G +
Sbjct: 322 CGCLALARR----------------------VFNSLGEQNQVSWTCFISGVAQFGLGDDA 359
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
L F ++ L AT + G LH + V VG+ +I M
Sbjct: 360 LALFNQMRQASVVLDEFTLATILGVCSGQNYAASGELLHGYAIKSGMDSSVPVGNAIITM 419
Query: 220 YLKCGCNGIESSIQIGK----------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
Y +CG + ++S+ A++T +++ G +A F++M RN+I+W +
Sbjct: 420 YARCG-DTEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSM 478
Query: 270 ISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315
+S + Q G E KP + F S + C+ + G + + KF
Sbjct: 479 LSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTFATS-IRACADLATIKLGTQVVSHVTKFG 537
Query: 316 YTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+ +V + G + EA+K+ D + K + W A++ A
Sbjct: 538 LSSDVSVANSIVTMYSRCGQIKEARKVFDSIHVK-NLISWNAMMAA 582
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 124/305 (40%), Gaps = 48/305 (15%)
Query: 96 MHV--KCGAVDYAESAFLRMLNPSLFCWK------FGIIRLL---IMFQKMP--ERDLVS 142
+HV CG VD A F + ++F W F R+ +F +MP RD VS
Sbjct: 46 LHVYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFDSGRMREAENLFDEMPLIVRDSVS 105
Query: 143 WNTMISILTRHGFGFETLCTFIELW---NHGF-GLSSMLYATAFSARASVYDLEWGPHLH 198
W TMIS ++G ++ TF+ + NH Y A + LH
Sbjct: 106 WTTMISGYCQNGLPGHSIKTFMSMLRDSNHDIQNCDPFSYTCTMKACGCLASTRLALQLH 165
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG---------KALVTMYAEGGSTQ 249
+ V+ + + + L+DMY+KCG + +I + +++ Y++
Sbjct: 166 AHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETIFLNIESPSLFCWNSMIYGYSQLYGPY 225
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAG--------VLE------KPRFFFFFVSLLSGC 295
+A F M R+ +SW LIS FSQ G +E KP F + S+LS C
Sbjct: 226 EALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYG-SVLSAC 284
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKP----T 348
+ + G H + + ++ ++D+ G L A+++ + + + T
Sbjct: 285 ASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQVSWT 344
Query: 349 CVIWG 353
C I G
Sbjct: 345 CFISG 349
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYLF 50
K CGS PIARK+HAQLI + L +S+FL ++DD +RVF + +F
Sbjct: 15 KLCGSP---PIARKLHAQLILSGLDASLFLLNNLLHVYSNCGMVDDAFRVFREANHANIF 71
Query: 51 TYNTMING 58
T+NTM++
Sbjct: 72 TWNTMLHA 79
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 175/361 (48%), Gaps = 51/361 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT +T++ C + +++ H + K F SD + + + M+ +CG+++ A
Sbjct: 11 FTLSTVVKA---CASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHV 67
Query: 110 FLRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F +M S W I + L +F +M ERD+VSW +I+ ++G+G E+L
Sbjct: 68 FDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESL 127
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F ++ G + + SA A + LE G H+ VV +LD+ VGS L+DM
Sbjct: 128 NVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDM- 186
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
YA+ GS + A F+ M +RN +SW +I+ +Q G
Sbjct: 187 ---------------------YAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGN 225
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCM 323
F FV +LS CSH+G V +G+ YF M + ++ CM
Sbjct: 226 DAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCM 285
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383
+DLLG +G L EA+ I+ MP +P +WGALLGAC H NT+LA+ + +LL ++V++
Sbjct: 286 IDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIA 345
Query: 384 G 384
G
Sbjct: 346 G 346
>gi|356532255|ref|XP_003534689.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Glycine max]
Length = 948
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 138/258 (53%), Gaps = 37/258 (14%)
Query: 30 FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESI 89
F+ ++ D + P F+Y + C C+ + + AL LH V K + + I
Sbjct: 126 FMSMLRDSNHDIQNCDP---FSYTCTMKA---CGCLASTRFALQLHAHVIKLHLGAQTCI 179
Query: 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---------FGIIRLLIMFQKMPERDL 140
S +DM++KCGA+ AE+ FL + +PSLFCW +G L +F +MP+ D
Sbjct: 180 QNSLVDMYIKCGAITLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPKHDH 239
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSWNT+IS+ +++G G L T++E+ N GF + M Y + SA AS+ DL+WG HLH+R
Sbjct: 240 VSWNTLISVFSQYGHGIRCLSTYVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHAR 299
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
++ ME SLD F+GSGLIDMY KCGC + A F +
Sbjct: 300 ILRMEHSLDAFLGSGLIDMYAKCGCLAL----------------------ARRVFNSLGE 337
Query: 261 RNMISWMVLISAFSQAGV 278
+N +SW LIS +Q G+
Sbjct: 338 QNQVSWTCLISGVAQFGL 355
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 173/397 (43%), Gaps = 67/397 (16%)
Query: 10 LPIARKI------HAQLISTCLISSIF-LQLIDDDYRVFCDIGPRYL----FTYNTMING 58
L +AR++ Q+ TCLIS + L DD +F + + FT T++
Sbjct: 325 LALARRVFNSLGEQNQVSWTCLISGVAQFGLGDDALALFNQMRQASVVLDEFTLVTILG- 383
Query: 59 GVRCLCVGNIKMALH--LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP 116
+C G A LHG K S + + I M+ +CG + A AF M
Sbjct: 384 ----VCSGQNYAATGELLHGYAIKNGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLR 439
Query: 117 SLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
W I R F PER++++WN+M+S +HGF E + ++ +
Sbjct: 440 DTISWTAMITAFSQNGDIDRARQCFDMTPERNVITWNSMLSTYIQHGFSEEGMKLYVLMR 499
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ + +AT+ A A + ++ G + S V G
Sbjct: 500 SKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKF----------------------G 537
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
+ S + + ++VTMY+ G ++A F+ + +N+ISW +++AF+Q G+ K
Sbjct: 538 LSSDVSVANSIVTMYSRCGQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKA----- 592
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+ + K + Y + DLLG +GLL +AK LID MP KP
Sbjct: 593 -------------IETYEDMLRTECKPDHISYVAVLSDLLGRAGLLDQAKNLIDGMPFKP 639
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+WGALLGAC H+++ LA+ + L++L+V+ G
Sbjct: 640 NATVWGALLGACRIHHDSILAKTAAKKLMELNVEDSG 676
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 135/350 (38%), Gaps = 58/350 (16%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGV--RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSID 95
Y C++G F N M G V C + ++K HLH + + D + ID
Sbjct: 262 YVEMCNLG----FKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLID 317
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF 155
M+ KCG + A +F + E++ VSW +IS + + G
Sbjct: 318 MYAKCGCLALARR----------------------VFNSLGEQNQVSWTCLISGVAQFGL 355
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
G + L F ++ L T + G LH + V VG+
Sbjct: 356 GDDALALFNQMRQASVVLDEFTLVTILGVCSGQNYAATGELLHGYAIKNGMDSSVPVGNA 415
Query: 216 LIDMYLKCGCNGIESSIQIGK----------ALVTMYAEGGSTQKADLAFELMSRRNMIS 265
+I MY +CG + ++S+ A++T +++ G +A F++ RN+I+
Sbjct: 416 IITMYARCG-DTEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMTPERNVIT 474
Query: 266 WMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAM 311
W ++S + Q G E KP + F S + C+ + G + +
Sbjct: 475 WNSMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTFATS-IRACADLATIKLGTQVVSHV 533
Query: 312 AKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
KF + +V + G + EA+K+ D + K + W A++ A
Sbjct: 534 TKFGLSSDVSVANSIVTMYSRCGQIKEARKVFDSIHVK-NLISWNAMMAA 582
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 155/397 (39%), Gaps = 107/397 (26%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYLF 50
K CGS PIARK+HAQLI + L +S+FL ++DD + VF + +F
Sbjct: 15 KLCGSP---PIARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFCVFREANHANIF 71
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T+NTM++ +F S G + AE+ F
Sbjct: 72 TWNTMLHA-----------------------FFDS---------------GRMREAENLF 93
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW--- 167
M P + RD VSW TMIS ++G ++ TF+ +
Sbjct: 94 DEM--PHIV------------------RDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDS 133
Query: 168 NHGF-GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
NH Y A + + LH+ V+ + + + L+DMY+KCG
Sbjct: 134 NHDIQNCDPFSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAI 193
Query: 227 GIESSIQIG---------KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+ ++ + +++ Y++ +A F M + + +SW LIS FSQ G
Sbjct: 194 TLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPKHDHVSWNTLISVFSQYG 253
Query: 278 --------VLE------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC- 322
+E KP F + S+LS C+ + G H + + ++
Sbjct: 254 HGIRCLSTYVEMCNLGFKPNFMTYG-SVLSACASISDLKWGAHLHARILRMEHSLDAFLG 312
Query: 323 --MVDLLGLSGLLGEAKKLIDEMPSKP----TCVIWG 353
++D+ G L A+++ + + + TC+I G
Sbjct: 313 SGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCLISG 349
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/438 (26%), Positives = 193/438 (44%), Gaps = 103/438 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+ AC +SL AR IHA L + S+FL + D RVF + R +
Sbjct: 71 ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130
Query: 50 FTYNTMINGGVRC------------LCVGNIK--------------------MALHLHGL 77
++ ++I G + + G K + +H L
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHAL 190
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K+ + D + + +DM+ +CG +D A + +F ++
Sbjct: 191 TVKYDWHDDVYVGSALLDMYARCGRMDMA----------------------IAVFDQLES 228
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
++ VSWN +I+ R G G TL F E+ +GF + Y++ FSA A + LE G +
Sbjct: 229 KNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWV 288
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ L FVG+ ++D MYA+ GS A F+
Sbjct: 289 HAHMIKSGERLSAFVGNTILD----------------------MYAKSGSMIDARKVFDR 326
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+ ++++++W +++AF+Q G+ + F F+S+L+ CSH G V +G
Sbjct: 327 VDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEG 386
Query: 305 KHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K YF M ++ ++V +VDLLG +GLL +A I +MP KPT +WGALLG+C
Sbjct: 387 KQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRM 446
Query: 362 HYNTKLAELVMRNLLQLD 379
H N K+ + ++ +LD
Sbjct: 447 HKNAKIGQFAADHVFELD 464
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 39/197 (19%)
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
LY + +A A L+ +H+ + + + VF+ + LI +Y KC
Sbjct: 66 LYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKC------------- 112
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP----------RFF- 285
G+ A F+ M R+M SW LI+ ++Q + ++ RF
Sbjct: 113 ---------GAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKP 163
Query: 286 --FFFVSLL--SGCSHSGPVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLI 340
F F SLL +G S S + + H T + Y ++D+ G + A +
Sbjct: 164 NGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVF 223
Query: 341 DEMPSKPTCVIWGALLG 357
D++ SK V W AL+
Sbjct: 224 DQLESK-NGVSWNALIA 239
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 201/448 (44%), Gaps = 96/448 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLI----------STCLIS-SIFLQLIDDDYRVFCDIGPRYL 49
+++C +L L I IHA LI ++CLIS SI L+D +VF I L
Sbjct: 22 LESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNL 78
Query: 50 FTYNTMING--GVR------------------------------CLCVGNIKMALHLHGL 77
F YN+ I G G + C G++ M + HG
Sbjct: 79 FIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQ 138
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRL 128
+ + F SD + S + M+ G + A F R+ + W K G +
Sbjct: 139 IIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSA 198
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F KMPE++LV+W+ MIS ++ F + + + L + G + + + ++ A +
Sbjct: 199 RKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHL 258
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
LE G H ++ + ++++ +G+ L+DM YA GS
Sbjct: 259 GALELGERAHDYILRNKMTVNLILGTALVDM----------------------YARCGSI 296
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
KA F+ + R+ +SW LI+ F+ G EK +F F ++LS C
Sbjct: 297 DKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSAC 356
Query: 296 SHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
SH G V +G F +M K Y ++ CMVDLLG +G L EA+K ++EMP KP
Sbjct: 357 SHGGLVERGLELFESM-KRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAP 415
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQL 378
IWGALLGAC H N+++AE + L++L
Sbjct: 416 IWGALLGACRIHKNSEIAERAGKTLIEL 443
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/443 (26%), Positives = 194/443 (43%), Gaps = 103/443 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+ AC +SL AR IHA L + S+FL + D RVF + R +
Sbjct: 71 ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130
Query: 50 FTYNTMINGGVRC------------LCVGNIK--------------------MALHLHGL 77
++ ++I G + + G K + +H L
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHAL 190
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K+ + D + + +DM+ +CG +D A + +F ++
Sbjct: 191 TVKYDWHDDVYVGSALLDMYARCGRMDMA----------------------IAVFDQLES 228
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
++ VSWN +I+ R G G TL F E+ +GF + Y++ FSA A + LE G +
Sbjct: 229 KNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWV 288
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ L FVG+ ++D MYA+ GS A F+
Sbjct: 289 HAHMIKSGERLSAFVGNTILD----------------------MYAKSGSMIDARKVFDR 326
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+ ++++++W +++AF+Q G+ + F F+S+L+ CSH G V +G
Sbjct: 327 VDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEG 386
Query: 305 KHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K YF M ++ ++V +VDLLG +GLL +A I +MP KPT +WGALLG+C
Sbjct: 387 KQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRM 446
Query: 362 HYNTKLAELVMRNLLQLDVKVFG 384
H N K+ + ++ +LD G
Sbjct: 447 HKNAKIGQFAADHVFELDPDDTG 469
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 39/200 (19%)
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ LY + +A A L+ +H+ + + + VF+ + LI +Y KC
Sbjct: 63 TPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKC---------- 112
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP----------R 283
G+ A F+ M R+M SW LI+ ++Q + ++ R
Sbjct: 113 ------------GAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGR 160
Query: 284 FF---FFFVSLL--SGCSHSGPVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAK 337
F F F SLL +G S S + + H T + Y ++D+ G + A
Sbjct: 161 FKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAI 220
Query: 338 KLIDEMPSKPTCVIWGALLG 357
+ D++ SK V W AL+
Sbjct: 221 AVFDQLESK-NGVSWNALIA 239
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/436 (26%), Positives = 186/436 (42%), Gaps = 103/436 (23%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYLFT 51
AC K+L AR IHA L +CL FL + D VF + R + +
Sbjct: 69 ACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVS 128
Query: 52 YNTMINGGVRCL--------------------------------CVGNIKMALHLHGLVK 79
+ +I G + G + +H L
Sbjct: 129 WTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAV 188
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
K+ + D + + +DM+ +C +D A +++F ++ ++
Sbjct: 189 KYNWDEDVYVGSALLDMYARCEQMDMA----------------------IMVFDRLVSKN 226
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
VSWN +I+ R G TL F E+ +GFG + Y++ FSA A + LE G +H+
Sbjct: 227 EVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHA 286
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
++ L FVG+ ++ MYA+ GS A F+ M
Sbjct: 287 HLIKSGQKLTAFVGN----------------------TMLGMYAKSGSMVDARKVFDRMD 324
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
+R++++W +++A +Q G+ ++ F F+S+L+ CSH G V +GKH
Sbjct: 325 KRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKH 384
Query: 307 YFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
YF M + ++V VDLLG +GLL EA + +MP +PT +WGALLGAC H
Sbjct: 385 YFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHK 444
Query: 364 NTKLAELVMRNLLQLD 379
N K+ + ++ +LD
Sbjct: 445 NAKMGQYAADHVFELD 460
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 187/409 (45%), Gaps = 83/409 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KACG + L A +H + S +F+Q I++ RVF ++ R +
Sbjct: 87 IKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDV 146
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA--KSSIDMHVKCGAVDYAE 107
F + TM++G VR VG++ A L F + D ++A + ID + + VD AE
Sbjct: 147 FAWTTMVSGLVR---VGDMSSAGRL------FDMMPDRNLATWNTLIDGYARLREVDVAE 197
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
++F +MP RD++SW TMI+ +++ E L F E+
Sbjct: 198 ----------------------LLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMA 235
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
HG + AT SA A + L+ G +H ++ +LDV++GS LIDMY KC
Sbjct: 236 KHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKC---- 291
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
GS ++ L F + +N+ W +I + G E+ F
Sbjct: 292 ------------------GSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFD 333
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLS 330
FVS+LS C+H+G + +G+ F +M + ++ CMVDLL +
Sbjct: 334 KMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKA 393
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
GLL EA +LI M +P VIWGALL C H N ++A++ L+ L+
Sbjct: 394 GLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLE 442
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 172/378 (45%), Gaps = 67/378 (17%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +++ C ++ +HGL+ KF F DE + + + M+V C ++ A S
Sbjct: 123 FTFPSVLKA---CARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSL 179
Query: 110 F----------------LRMLNPSLFCWKF---GIIRL------LIMFQKMPERDLVSWN 144
F R + ++ W G +RL +F +MP+R +VSWN
Sbjct: 180 FCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWN 239
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
MIS ++G E + F E+ + + + + A A + LE G +H
Sbjct: 240 VMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIH------ 293
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
L G N IE +G ALV MY++ GS +A FE + +RN I
Sbjct: 294 ----------------LYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAI 337
Query: 265 SWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAM 311
+W +I AF+ G E F ++ +LS CSH+G V +G+ +F+ M
Sbjct: 338 TWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHM 397
Query: 312 AKFT----YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
K ++ CMVDLLG +G L EA++LI MP +P VIW ALLGAC H N K+
Sbjct: 398 VKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKM 457
Query: 368 AELVMRNLLQLDVKVFGS 385
E V L++L GS
Sbjct: 458 GERVAETLMELAPHDSGS 475
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 60/301 (19%)
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+DYA + F +M P+ FCW I+R+L + + L S M+ F +
Sbjct: 68 IDYARAVFRQMPEPNCFCWN-TILRVL---AETNDEHLQSEALML---------FSAMLC 114
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
+ + F S+L A A ++R L G +H +V D FV S L+ MY+
Sbjct: 115 DGRVKPNRFTFPSVLKACARASR-----LREGKQIHGLIVKFGFHEDEFVISNLVRMYVM 169
Query: 223 CG---------CNGI----------------ESSIQIGKALVTMYAEGGSTQKADLAFEL 257
C C + + ++ + ++ G + A F+
Sbjct: 170 CAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDE 229
Query: 258 MSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
M +R+++SW V+IS ++Q G +E F VS+L + G + G
Sbjct: 230 MPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289
Query: 305 K--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K H + K +VD+ G + EA ++ + +P K + W A++GA
Sbjct: 290 KWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLP-KRNAITWSAIIGAFAM 348
Query: 362 H 362
H
Sbjct: 349 H 349
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 171/378 (45%), Gaps = 67/378 (17%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +++ C ++ +HGL+ KF F DE + + + M+V C ++ A S
Sbjct: 123 FTFPSVLKA---CARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSL 179
Query: 110 F----------------LRMLNPSLFCWKF---GIIRL------LIMFQKMPERDLVSWN 144
F R + ++ W G +RL +F +MP R +VSWN
Sbjct: 180 FCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWN 239
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
MIS ++G E + F E+ + + + + A A + LE G +H
Sbjct: 240 VMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIH------ 293
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
L G N +E +G ALV MY++ GS KA FE + +RN I
Sbjct: 294 ----------------LYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAI 337
Query: 265 SWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAM 311
+W +I AF+ G E F ++ +LS CSH+G V +G+ +F+ M
Sbjct: 338 TWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHM 397
Query: 312 AKFT----YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
K ++ CMVDLLG +G L EA++LI MP +P VIW ALLGAC H N K+
Sbjct: 398 VKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKM 457
Query: 368 AELVMRNLLQLDVKVFGS 385
E V L++L GS
Sbjct: 458 GERVAETLMELAPHDSGS 475
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 118/301 (39%), Gaps = 60/301 (19%)
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+DYA + F +M P+ FCW I+R+L + + L S M+ F +
Sbjct: 68 IDYARAVFRQMPEPNCFCWN-TILRIL---AETNDEHLQSEALML---------FSAMLC 114
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
+ + F S+L A A ++R L G +H +V D FV S L+ MY+
Sbjct: 115 DGRVKPNRFTFPSVLKACARASR-----LREGKQIHGLIVKFGFHEDEFVISNLVRMYVM 169
Query: 223 CG---------CNGI----------------ESSIQIGKALVTMYAEGGSTQKADLAFEL 257
C C + + ++ + ++ G + A F+
Sbjct: 170 CAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDE 229
Query: 258 MSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
M R+++SW V+IS ++Q G +E F VS+L + G + G
Sbjct: 230 MPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289
Query: 305 K--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K H + K +VD+ G + +A ++ + +P K + W A++GA
Sbjct: 290 KWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLP-KRNAITWSAIIGAFAM 348
Query: 362 H 362
H
Sbjct: 349 H 349
>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
gi|219885099|gb|ACL52924.1| unknown [Zea mays]
Length = 530
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 164/346 (47%), Gaps = 63/346 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +++ C G + +H L K+ + D + + +DM+ +C +D A
Sbjct: 59 FTFTSLLKATGAC---GGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMA--- 112
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+++F ++ ++ VSWN +I+ R G TL F E+ +
Sbjct: 113 -------------------IMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRN 153
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
GFG + Y++ FSA A + LE G +H+ ++ L FVG+
Sbjct: 154 GFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGN--------------- 198
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
++ MYA+ GS A F+ M +R++++W +++A +Q G+ ++ F
Sbjct: 199 -------TMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEI 251
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLL 333
F+S+L+ CSH G V +GKHYF M + ++V VDLLG +GLL
Sbjct: 252 RKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLL 311
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA + +MP +PT +WGALLGAC H N K+ + ++ +LD
Sbjct: 312 KEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELD 357
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 109/256 (42%), Gaps = 55/256 (21%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN-----HGFGLSSMLYATAFSAR 185
+F KMP RD+VSW +I+ ++ E + ++ +GF +S+L AT
Sbjct: 14 VFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGG 73
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
S+ G +H+ V DV+VGS L+DMY +C Q+ A+
Sbjct: 74 CSI-----GEQMHALAVKYNWDEDVYVGSALLDMYARCE--------QMDMAI------- 113
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQA----------GVLEKPRF---FFFFVSLL 292
+ F+ + +N +SW LI+ F++ +++ F F + S+
Sbjct: 114 -------MVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMF 166
Query: 293 SGCSHSGPVTKGK----HYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSK 346
S + G + +G+ H + K T FV M+ + SG + +A+K+ D M K
Sbjct: 167 SAFARIGALEQGRWVHAHLIKSGQKLT---AFVGNTMLGMYAKSGSMVDARKVFDRM-DK 222
Query: 347 PTCVIWGALLGACCSH 362
V W +L A +
Sbjct: 223 RDLVTWNTMLTALAQY 238
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 189/436 (43%), Gaps = 86/436 (19%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGG---- 59
C +S + HA + + L + LI RVF DI R L ++N+MING
Sbjct: 155 CVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMG 214
Query: 60 ------------------------VRCLCV----GNIKMA--LHLHGLVKKFYFVSDESI 89
V L V GN + +HLH +V D +
Sbjct: 215 RSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEI--DSIV 272
Query: 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERDL 140
+ +DM+ KCG + A+S F +ML+ + W G+I L F +MP +++
Sbjct: 273 TNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNV 332
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSWN++I + G E + F + + G + S+ + + DL G HS
Sbjct: 333 VSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSY 392
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
+ +L + + +IDMY KC G+ Q A F M
Sbjct: 393 IFDNNITLSATLCNAIIDMYAKC----------------------GALQTAMDVFFGMPE 430
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHY 307
+N +SW V+I A + G ++ F F LLS CSHSG V G+HY
Sbjct: 431 KNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHY 490
Query: 308 FTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
F M T+ ++ CMVDLLG GLLGEA LI +MP KP V+W ALLGAC ++
Sbjct: 491 FEIM-NLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTY 549
Query: 363 YNTKLAELVMRNLLQL 378
N + + +M+ LL+L
Sbjct: 550 GNLAIGKQIMKQLLEL 565
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 117/417 (28%), Positives = 187/417 (44%), Gaps = 65/417 (15%)
Query: 5 GSLKSLPIARKIHAQLISTCLIS-----SIFLQL------IDDDYRVFCDIGPRYLFTYN 53
GS +L ++H + T LIS S F+ + IDD +F + R++ T+N
Sbjct: 535 GSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWN 594
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
MI G + C + AL L +++ F+ D + + + +V A+++ +
Sbjct: 595 AMIGGAAQQRCG---REALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHA 651
Query: 114 LNPSLFCWKFG------------IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
+ L + G + +F M ER++ +W MI L +HG G +
Sbjct: 652 TDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFS 711
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F+++ G + Y + SA AS LEW +H+ V D+ VG+ L+ MY
Sbjct: 712 HFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYA 771
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LE 280
KC GS A F+ M R++ SW V+I +Q G LE
Sbjct: 772 KC----------------------GSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLE 809
Query: 281 KPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMV 324
FF + +V++L+ CSH+G V +G+ F +M + ++ CMV
Sbjct: 810 ALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMV 869
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
DLLG +GLL EA+ I MP +P WGALLGAC ++ N ++AE + L+L K
Sbjct: 870 DLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPK 926
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 45/234 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C N+K +H + + F SD + + ++M+VKCG+++ A+
Sbjct: 229 CCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQ-------------- 274
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++F KM ER+++SW MI L +G G E F+++ GF +S Y +
Sbjct: 275 --------LIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSI 326
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A AS LEW +HS V+ +LD+ VG+ ALV M
Sbjct: 327 LNANASAGALEWVKEVHSHAVNAGLALDLRVGN----------------------ALVHM 364
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGC 295
YA+ GS A + F+ M+ R++ SW V+I +Q G ++ F F +GC
Sbjct: 365 YAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEA-FSLFLQMQRNGC 417
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 51/303 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KAC +L +KIHA +I + S + ++ I+D +F + R +
Sbjct: 226 LKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNV 285
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ MI G G + A HL +++ F+ + S ++ + GA+++ +
Sbjct: 286 ISWTVMIGGLAH---YGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEV 342
Query: 110 FLRMLNPSL-------------FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+N L + I ++F M ERD+ SW MI L +HG G
Sbjct: 343 HSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRG 402
Query: 157 FETLCTFIELWNHGF--GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
E F+++ +G L++ L SA AS LEW +VVH F+
Sbjct: 403 QEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEW-----VKVVHKHAEEAGFI-- 455
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
S ++IG AL+ MYA+ GS A L F+ M R++ISW ++ +
Sbjct: 456 ---------------SDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLA 500
Query: 275 QAG 277
Q G
Sbjct: 501 QNG 503
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 103/276 (37%), Gaps = 78/276 (28%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGV----------------RCLCVGNIKMALHL--- 74
IDD VF + R +F++ MI G R C+ N+ L +
Sbjct: 371 IDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430
Query: 75 ---------------HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
H ++ F+SD I + I M+ KCG++D A
Sbjct: 431 SAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDAR------------ 478
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
++F M +RD++SWN M+ L ++G G E F+++ G S Y
Sbjct: 479 ----------LVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYL 528
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ + S LEW +H V D VGS I MY++C
Sbjct: 529 SLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRC---------------- 572
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
GS A L F+ +S R++ +W +I +Q
Sbjct: 573 ------GSIDDARLLFDKLSVRHVTTWNAMIGGAAQ 602
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/329 (19%), Positives = 126/329 (38%), Gaps = 64/329 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F+Y ++ RCL +I +A +H + K + +A + ++++CG + A
Sbjct: 119 FSYVNILQ---RCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQV 175
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F ++L +++ W TMI +G + + + ++
Sbjct: 176 FDKLLKKNIYIW----------------------TTMIGGYAEYGHAEDAMRVYDKMRQE 213
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + Y + A +L+WG +H+ ++ DV V + L++MY+KC
Sbjct: 214 CGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKC------ 267
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
GS + A L F+ M RN+ISW V+I + G ++ F
Sbjct: 268 ----------------GSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQM 311
Query: 288 -----------FVSLLSGCSHSGPV--TKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLL 333
+VS+L+ + +G + K H A +V + SG +
Sbjct: 312 QREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSI 371
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+A+ + D M + W ++G H
Sbjct: 372 DDARVVFDGMTERDI-FSWTVMIGGLAQH 399
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 126/451 (27%), Positives = 195/451 (43%), Gaps = 98/451 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC ++ A +H + + +F+ + D R F ++ R +
Sbjct: 52 VKACTRAQAWDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNV 111
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE---------------------- 87
++N+MI G + G+ + A L G +++ F+ DE
Sbjct: 112 VSWNSMIGGYAQ---AGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLV 168
Query: 88 -------------SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII 126
+ + +DM+ KCG + A F M S+ W K G +
Sbjct: 169 HCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSV 228
Query: 127 RLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
F MPER+ VSWNTMIS + G E L + ++ +HG SA
Sbjct: 229 DAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSAC 288
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ DL G +H + + D+ + + L+DMY KCG ++++I++
Sbjct: 289 GRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCG--QVDTAIRL----------- 335
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF-----------FFFVSLLS 293
F M RN++SW V+I + G L+ FF FV+LLS
Sbjct: 336 ---------FREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSMVRNTSPDGITFVALLS 386
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
CSH G + G+HYF +M + Y ++ CMVDLLG G L +A LI EMP KP
Sbjct: 387 SCSHGGLLETGQHYFESM-RHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPD 445
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
V+WGALLGAC H N K+ + V++ LL+L+
Sbjct: 446 VVVWGALLGACRIHGNVKIGKQVIKQLLELE 476
>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 886
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/358 (31%), Positives = 164/358 (45%), Gaps = 54/358 (15%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F T+I+G C +I + LH L K ++ S I M+ KCG + AE
Sbjct: 393 FALATLISG---CCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELI 449
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M + W I + F M R++++WN M+ +HG + L
Sbjct: 450 FNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGL 509
Query: 161 CTFIELWNHGFGLSS-MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ ++ + + Y T F A + + G + V + LD V + +I M
Sbjct: 510 KMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITM 569
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KCG +A AF+ +SR++++SW +I+ +SQ G+
Sbjct: 570 YSKCG----------------------RISEARKAFDFLSRKDLVSWNAMITGYSQHGMG 607
Query: 280 E--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFV 321
+ KP + + V++LSGCSHSG V +GK YF M + +F
Sbjct: 608 KQAIEIFDDILNKGAKPDYISY-VAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFS 666
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
CMVDLLG +G L EAK LIDEMP KPT +WGALL AC +H N LAEL ++L LD
Sbjct: 667 CMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLD 724
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 157/357 (43%), Gaps = 79/357 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G ++AL L GL+ KF D + + +DM V+CGA+D+A F R+ NP++ C
Sbjct: 169 CGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICR 228
Query: 122 K---------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
G+ L +F+ MPERD+VSWN +IS L++ G E L +++ G
Sbjct: 229 NSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVR 288
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
S Y ++ +A A + LEWG LH +V+ P +D +V S ++++Y KCGC
Sbjct: 289 PDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGC------- 341
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------ 285
++A F + RN +SW VLI F Q G E F
Sbjct: 342 ---------------FKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAE 386
Query: 286 ------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT---------------C------ 318
F +L+SGC ++ + G + K +T C
Sbjct: 387 LMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNA 446
Query: 319 ----YFVCMVDLLGLSGL---------LGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
F+ D++ +G+ + +A++ D+M ++ + W A+LGA H
Sbjct: 447 ELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTR-NVITWNAMLGAYIQH 502
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/386 (20%), Positives = 155/386 (40%), Gaps = 79/386 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+++CG+ +L AR +H++LI+ L S +FLQ NT+++ +
Sbjct: 32 LRSCGARSALTGARTLHSRLINVGLASVVFLQ--------------------NTLLHAYL 71
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM--HVKCGAVDYAESAFLRMLNPSL 118
C + + + L +++ ++ +I M + K G++ A
Sbjct: 72 SCGALSDARNLLRDE--------ITEPNVITHNIMMNGYAKLGSLSDA------------ 111
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSML 177
+ +F +MP RD+ SWNT++S + G L F+ + G L ++
Sbjct: 112 ----------VELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFT 161
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES------- 230
+ + ++ E L + + D V + L+DM ++CG S
Sbjct: 162 FGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIK 221
Query: 231 --SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF- 287
+I +++ YA+ A F+ M R+++SW ++ISA S++G + +
Sbjct: 222 NPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVD 281
Query: 288 ------------FVSLLSGCSHSGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGL 332
+ S L+ C+ + GK + + + +V MV+L G
Sbjct: 282 MHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGC 341
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGA 358
EAK++ + + + V W L+G
Sbjct: 342 FKEAKRVFSSLRDRNS-VSWTVLIGG 366
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 189/422 (44%), Gaps = 66/422 (15%)
Query: 1 MKACGSLKSLPIARKIHA-----QLISTCLISSIFLQL------IDDDYRVFCDIGPRYL 49
+KAC SL +L +++HA L S + + L++ I++ R+F ++ +
Sbjct: 136 LKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDI 195
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ MI + GN K A L +++ F + S ++ GA+ + +
Sbjct: 196 ISWTVMIGAYAQS---GNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRV 252
Query: 110 FLRMLNPSL-------------FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
L+ L + I ++F +M RD+VSWN MI HG G
Sbjct: 253 HRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRG 312
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E F+++ G ++++ + +A AS LEW +H + +DV VG+
Sbjct: 313 HEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGT-- 370
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
ALV MY++ GS A + F+ M RN++SW +IS +Q
Sbjct: 371 --------------------ALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQH 410
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
G+ + F FV++LS CSH+G V +G+ + AM + +
Sbjct: 411 GLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSH 470
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
CMVDLLG +G L EAK ID M P WGALLG+C ++ N +L ELV + L+LD
Sbjct: 471 CNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLD 530
Query: 380 VK 381
K
Sbjct: 531 PK 532
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 126/318 (39%), Gaps = 61/318 (19%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
RCL ++ A +H + K + + + + ++++CG + A
Sbjct: 37 RCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARC------------ 84
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+F + ++ SWN MI+ H + + F E+ + G ++ Y
Sbjct: 85 ----------VFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMI 134
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A AS+ L+WG +H+ + H DV VG+ L+ MY KC
Sbjct: 135 ILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKC----------------- 177
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----------VLEKPRF---FFF 287
GS +A F+ + ++ISW V+I A++Q+G +E+ F
Sbjct: 178 -----GSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAIT 232
Query: 288 FVSLLSGCSHSGPV--TKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMP 344
+VS+L+ C+ G + K H A +V + SG + +A+ + D M
Sbjct: 233 YVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK 292
Query: 345 SKPTCVIWGALLGACCSH 362
+ V W ++GA H
Sbjct: 293 VRDV-VSWNVMIGAFAEH 309
>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Brachypodium distachyon]
Length = 802
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 118/419 (28%), Positives = 193/419 (46%), Gaps = 69/419 (16%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFT 51
AC K+L ARKIHA L S+ FL + + ++VF + + + +
Sbjct: 60 ACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVS 119
Query: 52 YNTMINGGVRC--------LCVGNIKMALHLHG-----LVKKFYFVSDESIAKSSIDMHV 98
+ ++I G + L G +K +G L+K +D I + V
Sbjct: 120 WTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAV 179
Query: 99 KCGAVDYAESAFL--RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
KC D+ E ++ +L+ C K + +F K+ ++ VSWN +IS R G G
Sbjct: 180 KC---DWHEDVYVGSALLDMYARCGKMDMA--TAVFDKLDSKNGVSWNALISGFARKGDG 234
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
L F E+ +GF + Y++ FSA A + LE G +H+ ++ L FVG+ +
Sbjct: 235 ETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTM 294
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+D MYA+ GS A FE + +++++W +++AF+Q
Sbjct: 295 LD----------------------MYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQY 332
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YF 320
G+ ++ F F+ +L+ CSH G V +GKHYF + ++ ++
Sbjct: 333 GLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHY 392
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
V +VDLLG +GLL A I +MP +PT +WGALL AC H N K+ + ++ QLD
Sbjct: 393 VTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLD 451
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 193/444 (43%), Gaps = 84/444 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KAC SL + + +HA+ I + + + + D +VF + R
Sbjct: 101 LKACASLSIVKHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNA 160
Query: 50 FTYNTMI-----NGGVRCLCV----GNIKMALHLHGLVKKFYFVSDESIAKS-------- 92
T+N MI NG + + +I+ A+ ++ F D A+
Sbjct: 161 VTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSE 220
Query: 93 ---------SIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQK 134
+D + + ++ A F M + F W K + +F +
Sbjct: 221 LRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDR 280
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+P R+LV+WN++IS ++GF E L F ++ GF + A+ SA + + L+ G
Sbjct: 281 IPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAG 340
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H + H L+ FV +GL+DMY KC G A L
Sbjct: 341 KKIHHMMNHKGIKLNQFVLNGLVDMYAKC----------------------GDLANARLI 378
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
FE M+ RN W +IS F+ G ++ FF F+S+LS C+H G V
Sbjct: 379 FEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFV 438
Query: 302 TKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F+ M K+ T ++ C++DLLG +G + EA LI MP KP V+WGALLGA
Sbjct: 439 NAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGA 498
Query: 359 CCSHYNTKLAELVMRNLLQLDVKV 382
C H + ++A+ V+ ++++D +
Sbjct: 499 CRVHLDMEMADRVVEEIVKVDSNI 522
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 31/241 (12%)
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHG---FGLSSMLYATAFSARASVYDLEWGPH 196
L +W +I G E L + L G G++ ++ A AS+ ++ G
Sbjct: 60 LSNWCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPLV----LKACASLSIVKHGKA 115
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES----------SIQIGKALVTMYAEGG 246
LH+ + DV +G+ L+ MY KCG N ++S + A++ Y G
Sbjct: 116 LHAESIKNGVDFDVMIGTSLVCMYAKCG-NVVDSRKVFDYMPERNAVTWNAMICGYLGNG 174
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS-----------LLSGC 295
++ A L FE MS R ++W+ +I F+++G E R FF V ++ G
Sbjct: 175 DSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGY 234
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
+ + + + F M + + + M+ G + EA+ + D +P + V W +L
Sbjct: 235 ARNAEMEAAREVFEGMPQRNFFAW-SSMISGYCKKGNVKEARSIFDRIPVR-NLVNWNSL 292
Query: 356 L 356
+
Sbjct: 293 I 293
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 16/174 (9%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF-----SQAGVL- 279
NG++ + IG +LV MYA+ G+ + F+ M RN ++W +I + S++ VL
Sbjct: 123 NGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLL 182
Query: 280 -EKP--RFFFFFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTCYFVCMVDLLGLSGLLGE 335
EK R ++ ++ G + SG + +F + ++ + MVD + +
Sbjct: 183 FEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEA 242
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV-----MRNLLQLDVKVFG 384
A+++ + MP + W +++ C N K A + +RNL+ + + G
Sbjct: 243 AREVFEGMPQR-NFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISG 295
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 196/453 (43%), Gaps = 94/453 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+ AC L + ++H+ + + +S +++ L+D D RVF ++G R +
Sbjct: 159 LSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNV 218
Query: 50 FTYNTMI-----NGGV---------------------------RCLCVGNIKMALHLHG- 76
++N++I NG C + IK+ +HG
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIR 127
+VK +D ++ + +DM+ KC + A F M ++ +
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+MF KM ER++VSWN +I+ T++G E L F L + +A A A
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---CNGIESSIQIGKALVTMYAE 244
+ +L G H V LK G +G E I +G +L+ MY +
Sbjct: 399 LAELHLGMQAHVHV-------------------LKHGFKFQSGEEDDIFVGNSLIDMYVK 439
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL--------------EKPRFFFFFVS 290
G ++ L F M R+ +SW +I F+Q G EKP +
Sbjct: 440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITM-IG 498
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LS C H+G V +G+HYF++M + ++ CMVDLLG +G L EAK +I+EMP +
Sbjct: 499 VLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQ 558
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P VIWG+LL AC H N L + V LL+++
Sbjct: 559 PDSVIWGSLLAACKVHRNITLGKYVAEKLLEVE 591
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 143/342 (41%), Gaps = 52/342 (15%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---FGIIRLL 129
++H V K F ++ I ID + KCG+++ F +M +++ W G+ +L
Sbjct: 41 YVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLG 100
Query: 130 IM------FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+ F+ MPERD +WN+M+S +H E LC F + GF L+ +A+ S
Sbjct: 101 FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLS 160
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A + + D+ G +HS + DV++GS L+DMY KC
Sbjct: 161 ACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKC-------------------- 200
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVS 290
G+ A F+ M RN++SW LI+ F Q G +E F S
Sbjct: 201 --GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLAS 258
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCM----VDLLGLSGLLGEAKKLIDEMPSK 346
++S C+ + G+ + K + + VD+ + EA+ + D MP +
Sbjct: 259 VISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR 318
Query: 347 ----PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
T +I G + A ++ RN++ + + G
Sbjct: 319 NVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAG 360
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 160/348 (45%), Gaps = 50/348 (14%)
Query: 62 CLCVGNIKMALHLHG-LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL-- 118
C + +K L +H +VK F D + + +DM+ KC V+ A F RM ++
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVS 317
Query: 119 -------FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+ + MF KM +R++VSWN +I+ T++G E L F L
Sbjct: 318 ETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESI 377
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---CNGI 228
+ + SA A++ DL G H+ V LK G +G
Sbjct: 378 WPTHYTFGNLLSACANLADLLLGRQAHTHV-------------------LKQGFEFQSGA 418
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL--------- 279
ES I +G +L+ MY + GS + FE M R+ +SW +I ++Q G
Sbjct: 419 ESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRK 478
Query: 280 -----EKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSG 331
EKP + +L CSH+G V +G+HYF +M + ++ CMVDLLG +G
Sbjct: 479 MLVCGEKPDHVTM-IGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAG 537
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EAK LI+ MP P V+WG+LL AC H N ++ + LL++D
Sbjct: 538 CLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEID 585
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 155/344 (45%), Gaps = 57/344 (16%)
Query: 47 RYLFTYNTMINGGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD 104
R F N G C G ++ M +H LV K + +D + + IDM+ KCG+V
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199
Query: 105 YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
AE F M+ ER+LV+WN++I+ ++G E L F+
Sbjct: 200 CAEEVFSGMI----------------------ERNLVTWNSLITCYEQNGPASEALEVFV 237
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKC 223
+ + G + A+ SA AS+ L+ G +H+RVV D+ +G+ L+DMY KC
Sbjct: 238 RMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKC 297
Query: 224 G----CNGIESSIQIGK-----ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
+ + I ++V+ YA S + A F M++RN++SW LI+ ++
Sbjct: 298 SKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYT 357
Query: 275 QAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----- 316
Q G E+ R F + F +LLS C++ + G+ T + K +
Sbjct: 358 QNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSG 417
Query: 317 --TCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ FV ++D+ G + + ++ ++M + CV W A++
Sbjct: 418 AESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKER-DCVSWNAII 460
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 60/330 (18%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI----------MFQKMPER 138
I ID++ KC +D A F RM + F W +I +L +F MPE
Sbjct: 52 IQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWN-SLISVLTKSGFLDEAARLFGSMPEP 110
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
D SWN+M+S +H E+L F+++ F L+ + +A SA A + DL G +H
Sbjct: 111 DQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVH 170
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ V S DV++GS LIDMY KC GS A+ F M
Sbjct: 171 ALVSKSRYSTDVYMGSALIDMYSKC----------------------GSVACAEEVFSGM 208
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGK 305
RN+++W LI+ + Q G + F S++S C+ + +G
Sbjct: 209 IERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEG- 267
Query: 306 HYFTAMAKFTYTCYFV-------CMVDLLGLSGLLGEAKKLIDEMPSK----PTCVIWGA 354
A+ T F +VD+ + EA+++ D M + T ++ G
Sbjct: 268 --LQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGY 325
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
A +++ RN++ + + G
Sbjct: 326 ARAASVKAARFMFSKMTQRNVVSWNALIAG 355
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 28/198 (14%)
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEGGS 247
+H+R++ + S+++F+ + LID+Y KC C + + +L+++ + G
Sbjct: 37 VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
+A F M + SW ++S F+Q E+ +F F S LS
Sbjct: 97 LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156
Query: 295 CSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C+ + G H + ++++ Y ++D+ G + A+++ M + V
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIER-NLVT 215
Query: 352 WGALLGACCSHYNTKLAE 369
W +L+ C N +E
Sbjct: 216 WNSLI--TCYEQNGPASE 231
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 126/452 (27%), Positives = 195/452 (43%), Gaps = 99/452 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC ++ A +H + L+ +F+ + D R F ++ R +
Sbjct: 119 VKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNV 178
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE---------------------- 87
++N+MI G + G+ + L G +++ F+ DE
Sbjct: 179 VSWNSMIGGYAQ---AGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLV 235
Query: 88 -------------SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII 126
+ + +DM+ KCG + A F M S+ W K G +
Sbjct: 236 HCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSV 295
Query: 127 RLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
F MPER++VSWN MIS + G E L + ++ + G + SA
Sbjct: 296 NAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSAS 355
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ DL G +H + + DV + + L+DMY KCG Q+ A +++++E
Sbjct: 356 GRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCG--------QVDTA-ISLFSE- 405
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLL 292
M RN++SW V+I + G L+ FF FV+LL
Sbjct: 406 ------------MCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALL 453
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
S CSH G + G+HYF +M + Y ++ CMVDLLG G L +A LI EMP KP
Sbjct: 454 SACSHGGLLETGQHYFESM-RHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKP 512
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
V+WGALLGAC H N K+ V++ LL+L+
Sbjct: 513 DVVVWGALLGACRIHGNVKIGRQVIKQLLELE 544
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 159/338 (47%), Gaps = 63/338 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + +H +F +D +A +DM+ KCG
Sbjct: 426 CSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCG-------------------- 465
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ GI R I+F +M ERD+V WN+MIS L H E F ++ +G + YA+
Sbjct: 466 QIGIAR--IIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASM 523
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
++ A + + G +H+++V +V+VGS LIDMY KC
Sbjct: 524 INSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKC------------------ 565
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G+ A + F+ M +N+++W +I ++Q G EK F F
Sbjct: 566 ----GNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTF 621
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
+++L+GCSHSG V + +F +M + TY ++ C++D LG +G L E + LID M
Sbjct: 622 IAVLTGCSHSGLVDEAIAFFNSM-ESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNM 680
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
P K ++W LL AC H+N +L E ++L +LD K
Sbjct: 681 PCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPK 718
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+ +MP+R++VSWNT+I+ L R E L + + G + A+ SA +V
Sbjct: 96 LLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAA 155
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G H V + ++FV + L+ MY KCG G+E ++++
Sbjct: 156 LDDGRRCHGLAVKVGLDENLFVENALLGMYTKCG--GVEDAVRL---------------- 197
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
F+ M+ N +S+ ++ QAG ++ F
Sbjct: 198 ----FDGMASPNEVSFTAMMGGLVQAGSVDDALRLF 229
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 124/322 (38%), Gaps = 75/322 (23%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V + HGL K + + + + M+ KCG V+ A
Sbjct: 150 CGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDA--------------- 194
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF-----GLSSM 176
+RL F M + VS+ M+ L + G + L F + G +SS+
Sbjct: 195 ----VRL---FDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSV 247
Query: 177 LYATAFSARASVYDL----EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
L + A A AS +D+ G +H+ +V D VG+ LIDMY KC +
Sbjct: 248 LGSCA-QACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKC--------M 298
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
Q+ +A+ F+ + + +SW +LI+ F QAG K + +L
Sbjct: 299 QMDEAVKV--------------FDSLPNISTVSWNILITGFGQAGSYAKA------LEVL 338
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ SG Y +A +C + D+L A+ + D++ S+P+ W
Sbjct: 339 NLMEESGSEPNEVTYSNMLA----SC--IKARDVL-------SARAMFDKI-SRPSVTTW 384
Query: 353 GALL-GACCSHYNTKLAELVMR 373
LL G C + EL R
Sbjct: 385 NTLLSGYCQEELHQDTVELFRR 406
>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
Length = 513
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 156/323 (48%), Gaps = 60/323 (18%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L K+ + D + + +DM+ +CG +D A + +F
Sbjct: 62 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMA----------------------IAVF 99
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++ ++ VSWN +I+ R G G TL F E+ +GF + Y++ FSA A + LE
Sbjct: 100 DQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALE 159
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H+ ++ L FVG+ ++D MYA+ GS A
Sbjct: 160 QGKWVHAHMIKSGERLSAFVGNTILD----------------------MYAKSGSMIDAR 197
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSG 299
F+ + ++++++W +++AF+Q G+ + F F+S+L+ CSH G
Sbjct: 198 KVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGG 257
Query: 300 PVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V +GK YF M + ++V +VDLLG +GLL +A I +MP KPT +WGALL
Sbjct: 258 LVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 317
Query: 357 GACCSHYNTKLAELVMRNLLQLD 379
G+C H N K+ + ++ +LD
Sbjct: 318 GSCRMHKNAKIGQFAADHVFELD 340
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 55/248 (22%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWN-----HGFGLSSMLYATAFSARASVY 189
M RD+ SW ++I+ ++ E L + + +GF +S+L A SA + +
Sbjct: 1 MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGI- 59
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
G +H+ V + DV+VGS L+DMY +CG
Sbjct: 60 ----GEQIHALTVKYDWHDDVYVGSALLDMYARCG------------------------- 90
Query: 250 KADLA---FELMSRRNMISWMVLISAFSQAG----------VLEKPRF---FFFFVSLLS 293
+ D+A F+ + +N +SW LI+ F++ G +++ F F + S+ S
Sbjct: 91 RMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFS 150
Query: 294 GCSHSGPVTKGKHYFTAMAKF-TYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
+ G + +GK M K FV ++D+ SG + +A+K+ D + K V
Sbjct: 151 AIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHV-DKKDLV 209
Query: 351 IWGALLGA 358
W ++L A
Sbjct: 210 TWNSMLTA 217
>gi|359475601|ref|XP_003631713.1| PREDICTED: uncharacterized protein LOC100263769 [Vitis vinifera]
Length = 1493
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 97/157 (61%), Gaps = 22/157 (14%)
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+ + L +F KMPERD VSWNTMISIL++HGFG ETL TF+E+WN GF +SM YA+ SA
Sbjct: 75 VKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSA 134
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
S+YDLEWG HLH+R+V MEP LDV+ G GLID MYA+
Sbjct: 135 CTSIYDLEWGAHLHARIVRMEPRLDVYAGCGLID----------------------MYAK 172
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
G + A F+ ++ N +SW LI +QAG E+
Sbjct: 173 SGRLEFARQVFDGLTEPNAVSWTSLIGGVAQAGFQEE 209
>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 889
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 195/450 (43%), Gaps = 94/450 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLIST--CL---ISSIFLQL------IDDDYRVFCDIGPRYL 49
+ AC L SL +++HAQ+I + C+ ++S ++L + RVF + R
Sbjct: 301 LTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNT 360
Query: 50 FTYNTMINGGVRCLCVG--------------------------------NIKMALHLHGL 77
++ +I G ++ C ++ +A LH L
Sbjct: 361 VSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSL 420
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII-RL 128
K I+ S I M+ KCG + AES F M + W + G I +
Sbjct: 421 SLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKA 480
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS-MLYATAFSARAS 187
F M R++++WN M+ +HG + L + + + + Y T F A
Sbjct: 481 REFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCAD 540
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ + G + V + LD V + +I MY KCG
Sbjct: 541 MGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCG----------------------R 578
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLS 293
+A F+ +SR++++SW +I+ +SQ G+ + KP + + V++LS
Sbjct: 579 ISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISY-VAVLS 637
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSHSG V +GK YF + + +F CMVDLL +G L EAK LIDEMP KPT
Sbjct: 638 SCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTA 697
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WGALL AC +H N +LAEL ++L LD
Sbjct: 698 EVWGALLSACKTHGNNELAELAAKHLFDLD 727
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 160/357 (44%), Gaps = 79/357 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G ++AL L GL+ KF F D +A +DM V+CGAVD+A F ++ P++FC
Sbjct: 172 CGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCR 231
Query: 122 K---------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+G+ L +F+ MPERD+VSWN M+S L++ G E L +++ N G
Sbjct: 232 NSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVR 291
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
L S Y ++ +A A + L WG LH++V+ P +D +V S ++++Y KCGC
Sbjct: 292 LDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGC------- 344
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------ 285
++A F + RN +SW VLI F Q G E F
Sbjct: 345 ---------------FKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAE 389
Query: 286 ------FFFVSLLSGCS-----------HSGPVTKGKHYFTAMAKFTYTCYFVC------ 322
F +++SGCS HS + G ++ + Y C
Sbjct: 390 LMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNA 449
Query: 323 --------MVDLLGLSGLL---------GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
D++ +G+L G+A++ D M ++ + W A+LGA H
Sbjct: 450 ESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTR-NVITWNAMLGAYIQH 505
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 135/346 (39%), Gaps = 49/346 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ LH V + D +A + ++++ KCG A
Sbjct: 304 CAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARR------------- 350
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F + +R+ VSW +I ++G E+L F ++ + AT
Sbjct: 351 ---------VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATI 401
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIGK- 236
S ++ D+ LHS + + V + + LI MY KCG I SS++
Sbjct: 402 ISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDI 461
Query: 237 ----ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
++T Y++ G+ KA F+ MS RN+I+W ++ A+ Q G E +
Sbjct: 462 VSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTE 521
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGE 335
+V+L GC+ G G K T ++ + G + E
Sbjct: 522 KDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISE 581
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
A+K+ D + S+ V W A++ H K A + ++L+ K
Sbjct: 582 ARKIFDFL-SRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAK 626
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 29/255 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVY 189
+F +MP RD+ SWNT++S + G + + +F+ + G L ++ + A + ++
Sbjct: 117 LFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALG 176
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI--QIGK-------ALVT 240
E L + D V +G++DM+++CG S QI + +++
Sbjct: 177 WHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLA 236
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
YA+ A FE M R+++SW +++SA SQ+G +
Sbjct: 237 GYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTT 296
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEM 343
+ S L+ C+ + GK + + + C MV+L G EA+++ +
Sbjct: 297 YTSSLTACAKLSSLGWGKQLHAQVIR-SLPCIDPYVASAMVELYAKCGCFKEARRVFSSL 355
Query: 344 PSKPTCVIWGALLGA 358
+ T V W L+G
Sbjct: 356 RDRNT-VSWTVLIGG 369
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 48/253 (18%)
Query: 43 DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
D+ P ++ TY T+ G C +G K+ + G K + D S+ + I M+ KCG
Sbjct: 523 DVIPDWV-TYVTLFRG---CADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGR 578
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+ A +F + +DLVSWN MI+ ++HG G + +
Sbjct: 579 ISEARK----------------------IFDFLSRKDLVSWNAMITGYSQHGMGKQAIEI 616
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGP---HLHSRVVHMEPSLDVFVGSGLIDM 219
F ++ G + Y S+ + ++ G + R ++ P L+ F S ++D+
Sbjct: 617 FDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHF--SCMVDL 674
Query: 220 YLKCGCNGIES-----------SIQIGKALVTMYAEGGSTQKADLA----FELMSRRNMI 264
+ G N IE+ + ++ AL++ G+ + A+LA F+L S +
Sbjct: 675 LARAG-NLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDS-PDSG 732
Query: 265 SWMVLISAFSQAG 277
+M+L ++ AG
Sbjct: 733 GYMLLAKIYADAG 745
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGC----------NGIESSIQIGKALVTMYAEGGS 247
H R+V + + VF+ + L+ YL CG + E ++ ++ YA+ GS
Sbjct: 51 HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAG 277
A+ F M RR++ SW L+S + Q+G
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSG 140
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 117/419 (27%), Positives = 191/419 (45%), Gaps = 69/419 (16%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFT 51
AC K+L ARKIH L S+ FL + + ++VF + + + +
Sbjct: 60 ACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVS 119
Query: 52 YNTMINGGVRC--------LCVGNIKMALHLHG-----LVKKFYFVSDESIAKSSIDMHV 98
+ ++I G + L G +K +G L+K +D I + V
Sbjct: 120 WTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAV 179
Query: 99 KCGAVDYAESAFL--RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
KC D+ E ++ +L+ C K + +F K+ ++ VSWN +IS R G G
Sbjct: 180 KC---DWHEDVYVGSALLDMYARCGKMDMA--TAVFDKLDSKNGVSWNALISGFARKGDG 234
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
L F E+ +GF + Y++ FS A + LE G +H+ +V L FVG+ +
Sbjct: 235 ETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTM 294
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+D MYA+ GS A FE + +++++W +++AF+Q
Sbjct: 295 LD----------------------MYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQY 332
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YF 320
G+ ++ F F+ +L+ CSH G V +GKHYF + ++ ++
Sbjct: 333 GLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHY 392
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
V +VDLLG +GLL A I +MP +PT +WGALL AC H N K+ + ++ QLD
Sbjct: 393 VTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLD 451
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 39/196 (19%)
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+Y +A A +L+ +H + D F+ + LI +Y KC
Sbjct: 53 VYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKC------------- 99
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ-----------AGVLE---KP 282
GS +A F+ M +++M+SW LI+ ++Q G+L+ KP
Sbjct: 100 ---------GSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKP 150
Query: 283 RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLI 340
F F L + +++ G+ + A+ + +V ++D+ G + A +
Sbjct: 151 NGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVF 210
Query: 341 DEMPSKPTCVIWGALL 356
D++ SK V W AL+
Sbjct: 211 DKLDSK-NGVSWNALI 225
>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
Length = 635
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 164/351 (46%), Gaps = 63/351 (17%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ + + C G + +H L K+ D + + +DM+ +C +D A
Sbjct: 164 FTFTSFLKAAGAC---GGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMA--- 217
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
IR+ F + ++ VSWN +I+ R G G TL F E+ +
Sbjct: 218 ----------------IRV---FDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRN 258
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
GFG + Y++ FSA A + LE G +H+ ++ L FV +
Sbjct: 259 GFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVAN--------------- 303
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-------LEKP 282
++ MYA+ GS A F+ + +R++++W +++AF+Q G+ E+
Sbjct: 304 -------TILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEI 356
Query: 283 RFF------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLL 333
R + F+S+L+ CSH G V +GK YF M + ++V VDLLG +GLL
Sbjct: 357 RKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLL 416
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
EA + +MP +PT +WGALLGAC H N K+ + ++ +LD + G
Sbjct: 417 KEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTG 467
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 127/332 (38%), Gaps = 73/332 (21%)
Query: 46 PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105
PR Y+++I C N+ A +H + + D + S I M+ KCGAV
Sbjct: 62 PR---VYHSIITA---CAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSD 115
Query: 106 AESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165
A +F +P RD+VSW +I+ ++ E L +
Sbjct: 116 ARH----------------------VFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPD 153
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
+ F S + + A + G +H+ V DV+VGS L+DMY +C
Sbjct: 154 MLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARC-- 211
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLA---FELMSRRNMISWMVLISAFSQAG----- 277
Q+ D+A F+ + +N +SW LI+ F++ G
Sbjct: 212 -----------------------QQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETT 248
Query: 278 -----VLEKPRF---FFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL 329
+++ F F + S+ S + G + +G+ M K +LG+
Sbjct: 249 LMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGM 308
Query: 330 ---SGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
SG + +A+K+ D + + V W +L A
Sbjct: 309 YAKSGSMVDARKVFDRVDQR-DLVTWNTMLTA 339
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 180/387 (46%), Gaps = 69/387 (17%)
Query: 16 IHAQLISTCLISS-IFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHL 74
+H T ++S I +++++ +F + R ++N M+ G V+ ++MA L
Sbjct: 273 VHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQG---ERVEMAKEL 329
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
++ + S + I + +CG + A++ +F K
Sbjct: 330 FDVMP----CRNVSTWNTMITGYAQCGKISEAKN----------------------LFDK 363
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP+RD VSW MI+ ++ G +E L F+ + G L+ +++A S A V LE G
Sbjct: 364 MPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELG 423
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
LH R+V FVG+ L+ MY KC GS ++A+
Sbjct: 424 KQLHGRLVKGGYETGCFVGNALLLMYCKC----------------------GSIEEANDL 461
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
F+ M+ ++++SW +I+ +S+ G E+ FF V++LS CSH+G V
Sbjct: 462 FKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLV 521
Query: 302 TKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
KG+ YF M + + ++ CMVDLLG +GLL EA L+ MP +P IWG LLG
Sbjct: 522 DKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLG 581
Query: 358 ACCSHYNTKLAELVMRNLLQLDVKVFG 384
A H NT+LAE + ++ + G
Sbjct: 582 ASRVHGNTELAETAADKIFAMEPENSG 608
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 89/241 (36%), Gaps = 73/241 (30%)
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
M++ L +F + R+L F +MPERDLVSWN MI R N G
Sbjct: 96 MISGYLRNGEFELARML--FDEMPERDLVSWNVMIKGYVR---------------NRNLG 138
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ L+ P DV C N I
Sbjct: 139 KARELFERM------------------------PERDV------------CSWNTI---- 158
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP------RFFF 286
++ YA+ G A F+ M +N +SW L+SA+ Q LE+ R +
Sbjct: 159 ------LSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENW 212
Query: 287 FFVS---LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
VS LL G + + + +F +M K + ++ +G + EA++L DE
Sbjct: 213 ALVSWNCLLGGFVKKKKIVEARQFFDSM-KVRDVVSWNTIITGYAQNGEIDEARQLFDES 271
Query: 344 P 344
P
Sbjct: 272 P 272
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/351 (20%), Positives = 139/351 (39%), Gaps = 28/351 (7%)
Query: 27 SSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD 86
SS Q+ + G + +N I+ +R G AL + + ++ VS
Sbjct: 37 SSTQTQIQKSQTKPLPKSGDSDIKEWNVAISSYMR---TGRCSEALRVFKRMPRWSSVSY 93
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---GIIR------LLIMFQKMPE 137
++ I +++ G + A F M L W G +R +F++MPE
Sbjct: 94 NAM----ISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPE 149
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGFGLSSMLYATAFSARASVYDLEWGPH 196
RD+ SWNT++S ++G + F + + +++L A +++ + +G
Sbjct: 150 RDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSR 209
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+ +V L FV I + + + ++T YA+ G +A F+
Sbjct: 210 ENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFD 269
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHY 307
++ +W ++S + Q ++E+ R F + ++L+G V K
Sbjct: 270 ESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKEL 329
Query: 308 FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
F M + + M+ G + EAK L D+MP K V W A++
Sbjct: 330 FDVMPCRNVSTWNT-MITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 378
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF 288
+S I+ ++ Y G +A F+ M R + +S+ +IS + + G E R F
Sbjct: 56 DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115
Query: 289 VS---------LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKL 339
+ ++ G + + K + F M + C + ++ +G + +A+++
Sbjct: 116 MPERDLVSWNVMIKGYVRNRNLGKARELFERMPERD-VCSWNTILSGYAQNGCVDDARRV 174
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
D MP K V W ALL A N+KL E
Sbjct: 175 FDRMPEKND-VSWNALLSAYVQ--NSKLEE 201
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 160/354 (45%), Gaps = 61/354 (17%)
Query: 62 CLCVGNIKMALHLHG-LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM------- 113
C + K + +H +VK F +D + + +DM+ KCG V+ A F RM
Sbjct: 267 CATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVS 326
Query: 114 --LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
S + + MF + ++D+VSWN +I+ T++G E L F L
Sbjct: 327 ETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESV 386
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVH--------MEPSLDVFVGSGLIDMYLKC 223
+ + +A A++ DLE G HS VV EP D+FVG+ LIDMY+K
Sbjct: 387 CPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEP--DIFVGNSLIDMYMK- 443
Query: 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL---- 279
C +E +++ FE M ++ +SW +I ++Q G
Sbjct: 444 -CGSVEEGLRV--------------------FENMVEKDHVSWNTMIIGYAQNGYGMEAL 482
Query: 280 ----------EKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVD 325
EKP + L CSH+G V +G+ YF +M K ++ CMVD
Sbjct: 483 ELFQKMLESGEKPDHVTM-IGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVD 541
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LLG +G L EAK LI+ MP +P V+W +LL AC H N L + V + ++D
Sbjct: 542 LLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEID 595
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 150/354 (42%), Gaps = 54/354 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ + + + A +HG + + F + I ID++ KCG +DYA F RM ++F +
Sbjct: 34 CVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSF 93
Query: 122 KFGIIRLLI----------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
II L+ +F MPE+D SWN+MI+ +H E L F+ + F
Sbjct: 94 N-SIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDF 152
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
L+ + + SA + + DL+ G +H + + SLDVF+GSGLID Y KCG G
Sbjct: 153 VLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGC--- 209
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF----- 285
A F+ M +N++SW LI+ + Q G +E F
Sbjct: 210 -------------------ARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTE 250
Query: 286 -------FFFVSLLSGCSHSGPVTKGKHYFTAMA---KFTYTCYF-VCMVDLLGLSGLLG 334
S++S C+ +G + KF +VD+ G +
Sbjct: 251 LGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVN 310
Query: 335 EAKKLIDEMPSK----PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
EA+ + D MP + T ++ G A + A + ++++ + + G
Sbjct: 311 EARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAG 364
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 32/244 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++K+ +HGL+ K + D + ID + KCG V A
Sbjct: 166 CSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARR------------- 212
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F M E+++VSWN +I+ ++G E L F + GF + A+
Sbjct: 213 ---------VFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASV 263
Query: 182 FSARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCG------CNGIESSIQI 234
SA A++ + G +H+RVV + D+ +G+ L+DMY KCG C ++
Sbjct: 264 VSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRN 323
Query: 235 GKALVTM---YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSL 291
+ TM YA+ S + A F + +++++SW LI+ ++Q G E+ F +
Sbjct: 324 AVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKR 383
Query: 292 LSGC 295
S C
Sbjct: 384 ESVC 387
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 190/419 (45%), Gaps = 69/419 (16%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYLFT 51
AC K+L ARKIHA L S+ FL + + D VF + + + +
Sbjct: 60 ACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVS 119
Query: 52 YNTMINGGVRC--------LCVGNIKMALHLHG-----LVKKFYFVSDESIAKSSIDMHV 98
+ ++I G + L G +K +G L+K +D + + V
Sbjct: 120 WTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAV 179
Query: 99 KCGAVD--YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
KCG + Y SA L M C K + +F K+ ++ VSWN +IS R G G
Sbjct: 180 KCGWHEDVYVGSALLDMYAR---CGKMDMA--TAVFDKLDSKNGVSWNALISGFARKGDG 234
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
L TF E+ +GF + Y++ FS+ A + LE G +H+ V+ L FVG+ L
Sbjct: 235 ESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTL 294
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+D MYA+ GS A F+ + +++++W +++AF+Q
Sbjct: 295 LD----------------------MYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQY 332
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YF 320
G+ ++ F F+ +L+ CSH G V +GK YF M ++ ++
Sbjct: 333 GLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHY 392
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
V +V LLG +GLL A I +MP +PT +WGALL AC H N K+ + ++ +LD
Sbjct: 393 VTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELD 451
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 39/196 (19%)
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+Y + +A A +LE +H+ + + D F+ + LI MY KC
Sbjct: 53 VYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKC------------- 99
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA-------GVLE---KPRFF- 285
S A F+ M R++M+SW LI+ ++Q G+L K RF
Sbjct: 100 ---------RSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKP 150
Query: 286 --FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLI 340
F F SLL G+ H + Y ++D+ G + A +
Sbjct: 151 NGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVF 210
Query: 341 DEMPSKPTCVIWGALL 356
D++ SK V W AL+
Sbjct: 211 DKLDSK-NGVSWNALI 225
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 154/347 (44%), Gaps = 64/347 (18%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY +++N C ++ +H V + +D + + ++M+ CG+V A F
Sbjct: 431 TYTSILNA---CSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVF 487
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
RM+ +RD+V++N MI H G E L F L G
Sbjct: 488 DRMI----------------------QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG 525
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ Y +A A+ LEW +H+ V G S
Sbjct: 526 LKPDKVTYINMLNACANSGSLEWAREIHTLVRK----------------------GGFFS 563
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---- 286
+G ALV+ YA+ GS A + FE M++RN+ISW +I +Q G + F
Sbjct: 564 DTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMK 623
Query: 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLL 333
FVSLLS CSH+G + +G+ YF +M++ ++ CMVDLLG +G L
Sbjct: 624 MEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQL 683
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
EA+ LI MP + IWGALLGAC H N +AE + L+LD+
Sbjct: 684 DEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDL 730
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 137/330 (41%), Gaps = 66/330 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
TY ++N C+ + +H V K F SD + + I M+ +CG++ A
Sbjct: 329 ITYVILLNA---CVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDAR-- 383
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
++F KM +D++SW MI L + GFG E L + E+
Sbjct: 384 --------------------LVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQA 423
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + + Y + +A +S LEWG +H +VV + D VG+ L++MY C
Sbjct: 424 GVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMC------ 477
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
GS + A F+ M +R+++++ +I ++ A L K F
Sbjct: 478 ----------------GSVKDARQVFDRMIQRDIVAYNAMIGGYA-AHNLGKEALKLFDR 520
Query: 288 ------------FVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGL 332
++++L+ C++SG + + T + K F+ T +V G
Sbjct: 521 LQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGS 580
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+A + ++M +K + W A++G H
Sbjct: 581 FSDASIVFEKM-TKRNVISWNAIIGGSAQH 609
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/406 (20%), Positives = 163/406 (40%), Gaps = 74/406 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL-----ISSIFLQL------IDDDYRVFCDIGPRYL 49
+ +C S +L R+IH Q + L +++ L + I++ VF + + +
Sbjct: 133 LSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSV 192
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ I G C G + A + +++ V + S ++ A+ + ++
Sbjct: 193 VSWTITIGGYADC---GRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAV 249
Query: 110 FLRMLNPS---------------LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG 154
R+LN C + R + F+K+ RDL++WNTMI L G
Sbjct: 250 HSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQV--FEKLVNRDLIAWNTMIGGLAEGG 307
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
+ E + ++ G + + Y +A + L WG +HSRV + D+ V +
Sbjct: 308 YWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQN 367
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
LI MY +C GS + A L F+ M R+++ISW +I +
Sbjct: 368 ALISMYSRC----------------------GSIKDARLVFDKMVRKDVISWTAMIGGLA 405
Query: 275 QAGV---------------LEKPRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYT 317
++G +E R + S+L+ CS + G+ H A
Sbjct: 406 KSGFGAEALTVYQEMQQAGVEPNR--VTYTSILNACSSPAALEWGRRIHQQVVEAGLATD 463
Query: 318 CYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ +V++ + G + +A+++ D M + V + A++G +H
Sbjct: 464 AHVGNTLVNMYSMCGSVKDARQVFDRMIQRDI-VAYNAMIGGYAAH 508
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/399 (21%), Positives = 161/399 (40%), Gaps = 68/399 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLIS---------SIFLQL--IDDDYRVFCDIG--PR 47
+K C +K L R++H +I + ++++Q I++ +V+ + R
Sbjct: 30 LKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMER 89
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA- 106
+ ++N M+ G ++ G I+ AL L +++ D + S + GA+++
Sbjct: 90 TVHSWNAMVVGYIQ---YGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGR 146
Query: 107 ESAFLRMLNPSLFCWKFG------------IIRLLIMFQKMPERDLVSWNTMISILTRHG 154
E F M LF K I +F KM ++ +VSW I G
Sbjct: 147 EIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCG 206
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
F ++ G + + Y + +A +S L+WG +HSR+++ D VG+
Sbjct: 207 RSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGT 266
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
L+ MY KC GS + FE + R++I+W +I +
Sbjct: 267 ALVKMYAKC----------------------GSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304
Query: 275 QAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF- 320
+ G E+ + +V LL+ C +S + GK + +AK +T
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG 364
Query: 321 --VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
++ + G + +A+ + D+M K + W A++G
Sbjct: 365 VQNALISMYSRCGSIKDARLVFDKMVRKDV-ISWTAMIG 402
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 65/227 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL-----ISSIFLQL------IDDDYRVFCDIGPRYL 49
+ AC S +L R+IH Q++ L + + + + + D +VF + R +
Sbjct: 436 LNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDI 495
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
YN MI G G++ C G+++ A +H L
Sbjct: 496 VAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTL 555
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V+K F SD S+ + + + KCG+ A I+F+KM +
Sbjct: 556 VRKGGFFSDTSVGNALVSTYAKCGSFSDAS----------------------IVFEKMTK 593
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
R+++SWN +I +HG G + L F + G + + + SA
Sbjct: 594 RNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSA 640
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 37/208 (17%)
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
L G ++S Y V DL G +H ++ D + + LI+MY++CG
Sbjct: 14 LQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGS 73
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
IE + Q+ K L M R + SW ++ + Q G +EK
Sbjct: 74 --IEEARQVWKKLSYM------------------ERTVHSWNAMVVGYIQYGYIEKALKL 113
Query: 286 F-------------FFVSLLSGCSHSGPVTKGKH-YFTAM-AKFTYTCYFV-CMVDLLGL 329
+S LS C G + G+ +F AM A + C++++
Sbjct: 114 LRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAK 173
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLG 357
G + EA+++ D+M K + V W +G
Sbjct: 174 CGSIEEAREVFDKM-EKKSVVSWTITIG 200
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 126/450 (28%), Positives = 196/450 (43%), Gaps = 95/450 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC +++++ A H ++ + IF+ + D R F ++ R +
Sbjct: 121 LKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNV 180
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMA--LHLH 75
++NTMI G + C GN+++ +H H
Sbjct: 181 VSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCH 240
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR 127
LV D + + +DM+ KCG + A F M ++ W K G +
Sbjct: 241 MLVSGSRV--DRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVD 298
Query: 128 LLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+ F++MPER++VSWN MIS + G ETL + + + G A SA
Sbjct: 299 AVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACG 358
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
DL G +H V V + + L+DMY +CG ++++I +
Sbjct: 359 QNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCG--QVDTAIGL------------ 404
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
F M +N+ISW V+I A + G ++ FF FV LLS
Sbjct: 405 --------FTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLS 456
Query: 294 GCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSH G + G++YF AMA+ ++ CMVDLLG G L +A LI +M KP
Sbjct: 457 ACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDV 516
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLD 379
V+WGALLGAC H N ++ +LV++ LL+L+
Sbjct: 517 VVWGALLGACRIHGNVEIGKLVIKQLLELE 546
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 93/249 (37%), Gaps = 41/249 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++PE D +NT++ + E L + G + A +V
Sbjct: 70 LFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRA 129
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+E H VV + G I + AL+ +A GS +
Sbjct: 130 VEHALAAHGVVVKL----------------------GFVQQIFVANALLHFHASAGSLRD 167
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSH 297
+ F M+ RN++SW +I ++QAG V E F F VSLL CS
Sbjct: 168 SRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSS 227
Query: 298 SGPVTKGK----HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + G+ H + ++ ++D+ G G L A + D MP K V W
Sbjct: 228 EGNLEVGRLVHCHMLVSGSRVDRI-LGNALLDMYGKCGDLWMAHRCFDMMPIK-NVVTWT 285
Query: 354 ALLGACCSH 362
++L A H
Sbjct: 286 SMLCAQAKH 294
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 178/380 (46%), Gaps = 69/380 (18%)
Query: 23 TCLISS-IFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF 81
T ++S I +++++ +F + R ++N M+ G V+ ++MA L ++
Sbjct: 285 TAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQG---ERMEMAKELFDVMP-- 339
Query: 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV 141
+ S + I + +CG + A++ +F KMP+RD V
Sbjct: 340 --CRNVSTWNTMITGYAQCGKISEAKN----------------------LFDKMPKRDPV 375
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
SW MI+ ++ G FE L F+++ G L+ +++A S A V LE G LH R+
Sbjct: 376 SWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL 435
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
V FVG+ L+ MY KC GS ++A+ F+ M+ +
Sbjct: 436 VKGGYETGCFVGNALLLMYCKC----------------------GSIEEANDLFKEMAGK 473
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF 308
+++SW +I+ +S+ G E FF V++LS CSH+G V KG+ YF
Sbjct: 474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533
Query: 309 TAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
M + + ++ CMVDLLG +GLL +A L+ MP +P IWG LLGA H N
Sbjct: 534 YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGN 593
Query: 365 TKLAELVMRNLLQLDVKVFG 384
T+LAE + ++ + G
Sbjct: 594 TELAETAADKIFAMEPENSG 613
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 120/342 (35%), Gaps = 111/342 (32%)
Query: 54 TMING-GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE----- 107
T +NG RC N A + H L + + I KS +KCG D E
Sbjct: 19 TSLNGLKRRC---NNAHGAANFHSLKR----ATQTQIQKSQTKPLLKCGDSDIKEWNVAI 71
Query: 108 SAFLR------------------------MLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143
S+++R M++ L +F + R L F +MPERDLVSW
Sbjct: 72 SSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKL--FDEMPERDLVSW 129
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
N MI R N G + L+
Sbjct: 130 NVMIKGYVR---------------NRNLGKARELF------------------------E 150
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
+ P DV C N +++ YA+ G A F+ M +N
Sbjct: 151 IMPERDV------------CSWN----------TMLSGYAQNGCVDDARSVFDRMPEKND 188
Query: 264 ISWMVLISAFSQAGVLE------KPRFFFFFVS---LLSGCSHSGPVTKGKHYFTAMAKF 314
+SW L+SA+ Q +E K R + VS LL G + + + +F +M
Sbjct: 189 VSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM-NV 247
Query: 315 TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ ++ SG + EA++L DE P + W A++
Sbjct: 248 RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV-FTWTAMV 288
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 125/320 (39%), Gaps = 44/320 (13%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA--KSSIDM 96
++F ++ R L ++N MI G VR +G + + F + + + + +
Sbjct: 116 KLFDEMPERDLVSWNVMIKGYVRNRNLGKAR---------ELFEIMPERDVCSWNTMLSG 166
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ + G VD A S +F +MPE++ VSWN ++S ++
Sbjct: 167 YAQNGCVDDARS----------------------VFDRMPEKNDVSWNALLSAYVQNSKM 204
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR-VVHMEPSLDVFVGSG 215
E F N + L + V ++ ++ R VV + + SG
Sbjct: 205 EEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSG 264
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
ID + + A+V+ Y + ++A F+ M RN +SW +++ + Q
Sbjct: 265 KIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQ 324
Query: 276 AGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDL 326
+E + F + ++++G + G +++ K+ F M K + M+
Sbjct: 325 GERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSW-AAMIAG 383
Query: 327 LGLSGLLGEAKKLIDEMPSK 346
SG EA +L +M +
Sbjct: 384 YSQSGHSFEALRLFVQMERE 403
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
LKCG +S I+ ++ Y G +A F+ M R + +S+ +IS + + G E
Sbjct: 57 LKCG----DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFE 112
Query: 281 KPRFFFFFVS---------LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSG 331
R F + ++ G + + K + F M + C + M+ +G
Sbjct: 113 LARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERD-VCSWNTMLSGYAQNG 171
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
+ +A+ + D MP K V W ALL A N+K+ E M
Sbjct: 172 CVDDARSVFDRMPEKND-VSWNALLSAYVQ--NSKMEEACM 209
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 122/458 (26%), Positives = 195/458 (42%), Gaps = 94/458 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+ AC L + +IH+ + + +S +++ L+D D +VF ++G R +
Sbjct: 159 LSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNV 218
Query: 50 FTYNTMI-----NGGV---------------------------RCLCVGNIKMALHLHGL 77
++N++I NG C + IK+ +H
Sbjct: 219 VSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHAR 278
Query: 78 VKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIR 127
V K + ++ I ++ +DM+ KC + A F M ++ +
Sbjct: 279 VVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKA 338
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+MF KM ER++VSWN +I+ T++G E L F L + +A A A
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACAD 398
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---CNGIESSIQIGKALVTMYAE 244
+ DL G H V LK G +G E I +G +L+ MY +
Sbjct: 399 LADLHLGMQAHVHV-------------------LKHGFKFQSGEEDDIFVGNSLIDMYVK 439
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL--------------EKPRFFFFFVS 290
G ++ L F M R+ +SW +I F+Q G EKP +
Sbjct: 440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITM-IG 498
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LS C H+G V +G+HYF++M + ++ CMVDLLG +G L EAK +I+EMP +
Sbjct: 499 VLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQ 558
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
P VIWG+LL AC H N L + V L +++ G
Sbjct: 559 PDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSG 596
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 142/341 (41%), Gaps = 52/341 (15%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---FGIIRLLI 130
+H V K F ++ I ID + KCG+++ F +M ++F W G+ +L
Sbjct: 42 VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101
Query: 131 M------FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+ F+ MPERD +WN+M+S +H E L F + GF L+ +A+ SA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ + D+ G +HS + DV++GS L+DMY KC
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKC--------------------- 200
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSL 291
G+ A F+ M RN++SW LI+ + Q G +E + F S+
Sbjct: 201 -GNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASV 259
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCM----VDLLGLSGLLGEAKKLIDEMPSK- 346
+S C+ + G+ + K + + VD+ + EA+ + D MP +
Sbjct: 260 ISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319
Query: 347 ---PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
T ++ G + A ++ RN++ + + G
Sbjct: 320 VIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAG 360
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 188/452 (41%), Gaps = 100/452 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF---------------LQLIDDDYRVFCDIG 45
++ C L L I IHA +I T +I +F LID R+F I
Sbjct: 24 LETCSDLTHLKI---IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80
Query: 46 PRYLFTYNTMING--GVR------------------------------CLCVGNIKMALH 73
LF +N MI G G + C + I M
Sbjct: 81 NPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQ 140
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR------ 127
HG + K F D + S + M+ G + A F RM + W +IR
Sbjct: 141 AHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWT-SMIRGFNKCG 199
Query: 128 ----LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+F +MPE++LV+W+TMIS ++ + + F L + G + + + S
Sbjct: 200 DVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVIS 259
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
+ A + LE G H VV NG+ ++ +G ALV MYA
Sbjct: 260 SCAHLGALELGERAHDYVVK----------------------NGMTLNLILGTALVDMYA 297
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
GS KA FE + R+ +SW LI+ + G E+ +F F +
Sbjct: 298 RCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTA 357
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LS CSH G V +G F +M + ++ CMVDLLG +G L EA++ + +MP K
Sbjct: 358 VLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVK 417
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P +WGALLGAC H N ++ E V + L+QL
Sbjct: 418 PNAPVWGALLGACRIHKNAEIGERVGKILIQL 449
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 150/314 (47%), Gaps = 47/314 (14%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLVSWN 144
+D + + ++ A F M + F W K + +F ++P R+LV+WN
Sbjct: 102 VDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWN 161
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
++IS ++GF E L F ++ GF + A+ SA + + L+ G +H + H
Sbjct: 162 SLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHK 221
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
L+ FV +GL+DMY KC G A L FE M+ RN
Sbjct: 222 GIKLNQFVLNGLVDMYAKC----------------------GDLANARLIFEGMAHRNRA 259
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
W +IS F+ G ++ FF F+S+LS C+H G V G F+ M
Sbjct: 260 CWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRM 319
Query: 312 AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
K+ T ++ C++DLLG +G + EA LI MP KP V+WGALLGAC H + ++A
Sbjct: 320 EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMA 379
Query: 369 ELVMRNLLQLDVKV 382
+ V+ ++++D +
Sbjct: 380 DRVVEEIVKVDSNI 393
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF-----SQAGVL--EKP--RF 284
IG +LV MYA+ G+ + F+ M RN ++W +I + S++ VL EK R
Sbjct: 2 IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRT 61
Query: 285 FFFFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
++ ++ G + SG + +F + ++ + MVD + + A+++ + M
Sbjct: 62 AVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGM 121
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELV-----MRNLLQLDVKVFG 384
P + W +++ C N K A + +RNL+ + + G
Sbjct: 122 PQR-NFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISG 166
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 59/296 (19%)
Query: 113 MLNPSLFCW--KFG-IIRLLIMFQKMPERDLVSWNTMI-----------SILTRHGFGFE 158
M+ SL C K G ++ +F MPER+ V+WN MI ++L
Sbjct: 1 MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR 60
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLE--------WGPHL--HSRVVHMEPSL 208
T T+IE+ + GF S +AR D+ W + ++R ME +
Sbjct: 61 TAVTWIEMID-GFARS----GDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAR 115
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
+VF G + + ++++ Y + G+ ++A F+ + RN+++W
Sbjct: 116 EVFEGMPQRNFF-------------AWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNS 162
Query: 269 LISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMA-KF 314
LIS ++Q G E+ F S+LS CS G + GK M K
Sbjct: 163 LISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKG 222
Query: 315 TYTCYFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
FV +VD+ G L A+ + + M + W +++ H +K A
Sbjct: 223 IKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRAC-WNSMISGFAIHGQSKEA 277
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 159/347 (45%), Gaps = 66/347 (19%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY +++N C + +H V + +D +A + ++M+ CG+V A
Sbjct: 549 TYTSILNA---CSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQ-- 603
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+F +M +RD+V++N MI H G E L F L G
Sbjct: 604 --------------------VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG 643
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ Y +A A+ LEW +HS V L D YL S
Sbjct: 644 LKPDKVTYINMLNACANSGSLEWAKEIHSLV--------------LKDGYL--------S 681
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE------ 280
+G ALV+ YA+ GS A L F+ M +RN+ISW +I +Q G VL+
Sbjct: 682 DTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMK 741
Query: 281 ----KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTC-YFVCMVDLLGLSGL 332
KP F VSLLS CSH+G + +G+ YF +M++ T T ++ CMVDLLG +G
Sbjct: 742 MEGIKPDIVTF-VSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQ 800
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L E + LI MP + IWGALLGAC H N +AE + L+LD
Sbjct: 801 LDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLD 847
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 136/330 (41%), Gaps = 66/330 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
TY ++N C+ + +H V K F+ D S+ + I M+ +CG++ A
Sbjct: 447 ITYVILLNA---CVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDAR-- 501
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
++F KM +D++SW MI L + G G E L F ++
Sbjct: 502 --------------------LLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQA 541
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + + Y + +A +S L+WG +H +V+ + D V + L++MY C
Sbjct: 542 GLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMC------ 595
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
GS + A F+ M++R+++++ +I ++ A L K F
Sbjct: 596 ----------------GSVKDARQVFDRMTQRDIVAYNAMIGGYA-AHNLGKEALKLFDR 638
Query: 288 ------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGL 332
++++L+ C++SG + K + + K Y T +V G
Sbjct: 639 LQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGS 698
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+A + D+M K + W A++G C H
Sbjct: 699 FSDALLVFDKM-MKRNVISWNAIIGGCAQH 727
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 39/248 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+K+ RDL++WNTMI L G E + ++ G + + Y +A +
Sbjct: 402 VFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTA 461
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L WG +HSRVV D+ V + LI MY +C GS +
Sbjct: 462 LHWGREIHSRVVKDGFMFDISVQNALISMYARC----------------------GSIKD 499
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A L F M R+++ISW +I +++G+ + F + S+L+ CS
Sbjct: 500 ARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSS 559
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ G+ H A + +V++ + G + +A+++ D M + V + A
Sbjct: 560 PAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI-VAYNA 618
Query: 355 LLGACCSH 362
++G +H
Sbjct: 619 MIGGYAAH 626
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 98/439 (22%), Positives = 173/439 (39%), Gaps = 105/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLI---------SSIFLQL--IDDDYRVFCDIG--PR 47
+K C +K L R++H +I C + ++++Q I++ +V+ + R
Sbjct: 148 LKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTER 207
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHL------HGL------------------------ 77
+ ++N M+ G V+ G I+ AL L HGL
Sbjct: 208 TVHSWNAMVVGYVQ---YGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGR 264
Query: 78 -----VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
K + D ++A ++M+ KCG++ A +F
Sbjct: 265 EIHVEAMKARLLFDVNVANCILNMYAKCGSIHEARE----------------------VF 302
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
KM + +VSW +I G F ++ G + + Y +A + L+
Sbjct: 303 DKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALK 362
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIGKALV---TM---Y 242
WG +HS +++ D+ VG+ L+ MY KCG C + + + + L+ TM
Sbjct: 363 WGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGL 421
Query: 243 AEGGSTQKADLAFELMSRR----NMISWMVLISAFSQAGVLEKPRF---------FFFFV 289
AEGG+ ++A + M R N I++++L++A L R F F +
Sbjct: 422 AEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDI 481
Query: 290 S----LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
S L+S + G + + F M + + M+ L SGL EA + +M
Sbjct: 482 SVQNALISMYARCGSIKDARLLFNKMVRKDIISW-TAMIGGLAKSGLGAEALAVFQDMQQ 540
Query: 346 ---KPTCVIWGALLGACCS 361
KP V + ++L AC S
Sbjct: 541 AGLKPNRVTYTSILNACSS 559
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 147/361 (40%), Gaps = 66/361 (18%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
RC+ V ++ +H + + V D+ + I+M+++CG+++ A + ++
Sbjct: 150 RCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKL------- 202
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
ER + SWN M+ ++G+ E L E+ HG L
Sbjct: 203 -------------NHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMR 249
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIES-S 231
S+ S LE G +H + DV V + +++MY KCG + +E+ S
Sbjct: 250 LLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKS 309
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRR----NMISWMVLISAFSQAGVLEKPRFFFF 287
+ ++ YA+ G ++ A F+ M + N I+++ +++AFS L+ +
Sbjct: 310 VVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVH- 368
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC--YFVCMV--------DLLGLSGLLG--- 334
S + H + G TA+ K C Y C DL+ + ++G
Sbjct: 369 --SHILNAGHESDLAVG----TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 422
Query: 335 ------EAKKLIDEMPSK---PTCVIWGALLGACCS----HYNTKLAELVMRNLLQLDVK 381
EA ++ +M + P + + LL AC + H+ ++ V+++ D+
Sbjct: 423 EGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDIS 482
Query: 382 V 382
V
Sbjct: 483 V 483
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 65/227 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL-----ISSIFLQL------IDDDYRVFCDIGPRYL 49
+ AC S +L R+IH Q+I L +++ + + + D +VF + R +
Sbjct: 554 LNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
YN MI G G++ C G+++ A +H L
Sbjct: 614 VAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSL 673
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V K ++SD S+ + + + KCG+ A L++F KM +
Sbjct: 674 VLKDGYLSDTSLGNALVSTYAKCGSFSDA----------------------LLVFDKMMK 711
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
R+++SWN +I +HG G + L F + G + + + SA
Sbjct: 712 RNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSA 758
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 39/215 (18%)
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
L G ++S Y V DL G +H ++ LD + + LI+MY++CG
Sbjct: 132 LQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCG- 190
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
IE + Q+ L + R + SW ++ + Q G +E+
Sbjct: 191 -SIEEARQVWNKLN------------------HTERTVHSWNAMVVGYVQYGYIEEALKL 231
Query: 286 F-------------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGL 329
+ LLS C + G+ H A+ + C++++
Sbjct: 232 LREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAK 291
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLG--ACCSH 362
G + EA+++ D+M +K + V W ++G A C H
Sbjct: 292 CGSIHEAREVFDKMETK-SVVSWTIIIGGYADCGH 325
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 180/402 (44%), Gaps = 62/402 (15%)
Query: 16 IHAQLISTCLISSIFLQL------IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIK 69
+ L+S + S F+ + IDD +F + R + T+N MI G + C +
Sbjct: 362 VEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCG---R 418
Query: 70 MALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG----- 124
AL L +++ F D + + + +V A+++ + ++ L + G
Sbjct: 419 EALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVH 478
Query: 125 -------IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
+ +F M ER++ +W MIS L +HG G E F+++ G +
Sbjct: 479 MYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATT 538
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
Y + SA AS LEW +HS V+ D+ VG+ L+ MY KC
Sbjct: 539 YVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKC-------------- 584
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------------VLE--KPR 283
GS A F+ M R++ SW V+I +Q G LE KP
Sbjct: 585 --------GSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPN 636
Query: 284 FFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKL 339
+ FV++LS CSH+G V +G+ F ++ + ++ CMVDLLG +G L EAK
Sbjct: 637 -GYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHF 695
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
I MP +P WGALLGAC ++ N ++AE + L+L K
Sbjct: 696 ILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPK 737
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 105/234 (44%), Gaps = 45/234 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C ++K +H + + F SD + + ++M+VKCG++D A+
Sbjct: 40 CCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQ-------------- 85
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++F KM ER+++SW MI L +G G E F+++ GF +S Y +
Sbjct: 86 --------LIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSI 137
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A AS LEW +HS V+ +LD+ VG+ ALV M
Sbjct: 138 LNANASAGALEWVKEVHSHAVNAGLALDLRVGN----------------------ALVHM 175
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGC 295
YA+ GS A + F+ M R++ SW V+I +Q G ++ F F GC
Sbjct: 176 YAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEA-FSLFLQMERGGC 228
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 124/303 (40%), Gaps = 51/303 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KAC S SL +KIHA +I + S + ++ IDD +F + R +
Sbjct: 37 LKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNV 96
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ MI G G + A H +++ F+ + S ++ + GA+++ +
Sbjct: 97 ISWTVMIGG---LAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEV 153
Query: 110 FLRMLNPSL-------------FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+N L + I ++F M ERD+ SW MI L +HG G
Sbjct: 154 HSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRG 213
Query: 157 FETLCTFIELWNHG--FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
E F+++ G L++ L SA S LEW +H
Sbjct: 214 QEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKH-------------- 259
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
G G S +++G AL+ MYA+ GS A L F+ M R++ISW +I +
Sbjct: 260 --------AGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLA 311
Query: 275 QAG 277
Q G
Sbjct: 312 QNG 314
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 126/329 (38%), Gaps = 61/329 (18%)
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
L TY +++N G ++ +H K F+SD + + I M+ KCG++D A
Sbjct: 232 LTTYLSILNASA-ITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDAR- 289
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
++F M +RD++SWN MI L ++G G E F+++
Sbjct: 290 ---------------------LVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQ 328
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
GF S Y + + S EW +H V + D+ VGS + MY++C
Sbjct: 329 EGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRC----- 383
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG--------VLE 280
GS A L F+ ++ RN+ +W +I +Q L+
Sbjct: 384 -----------------GSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQ 426
Query: 281 KPRFFFF-----FVSLLSGCSHSGPV--TKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLL 333
R FF FV++LS + K H + A +V + G
Sbjct: 427 MRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNT 486
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
AK++ D+M + W ++ H
Sbjct: 487 MYAKQVFDDMVER-NVTTWTVMISGLAQH 514
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 39/233 (16%)
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
MI +G+ + + + ++ G + + Y + A S L+WG +H+ ++
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
DV V + L++MY+KC GS A L F+ M RN+IS
Sbjct: 61 FQSDVRVETALVNMYVKC----------------------GSIDDAQLIFDKMVERNVIS 98
Query: 266 WMVLISAFSQAGVLEKP--RFF-----------FFFVSLLSGCSHSGPV--TKGKHYFTA 310
W V+I + G ++ RF + +VS+L+ + +G + K H
Sbjct: 99 WTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAV 158
Query: 311 MAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
A +V + SG + +A+ + D M + W ++G H
Sbjct: 159 NAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERD-IFSWTVMIGGLAQH 210
>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
Length = 865
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 166/364 (45%), Gaps = 54/364 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F T+I+G C ++ + LH L K + ++ S I M+ KC + AES
Sbjct: 372 FALATLISG---CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESI 428
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M + W I + F M +++++WN M+ +HG + L
Sbjct: 429 FRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGL 488
Query: 161 CTF-IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ + L + Y T F A + + G + R V + LD V + +I M
Sbjct: 489 RMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITM 548
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KC G +A F+ ++ ++++SW +I+ +SQ G+
Sbjct: 549 YSKC----------------------GRILEARKVFDFLNVKDIVSWNAMITGYSQHGMG 586
Query: 280 E--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFV 321
+ KP + + V++LSGCSHSG V +GK YF M + +F
Sbjct: 587 KQAIEIFDDILKRGAKPDYISY-VAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFS 645
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
CMVDLLG +G L EAK LIDEMP KPT +WGALL AC H N +LAEL +++ +LD
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSP 705
Query: 382 VFGS 385
GS
Sbjct: 706 DSGS 709
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 162/377 (42%), Gaps = 88/377 (23%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +AL L G+V+KF D +A + +DM V+CG VD A F+R+ P++FC
Sbjct: 148 CGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCR 207
Query: 122 K---------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+G+ L +F MPERD+VSWN M+S L++ G E L +++ + G
Sbjct: 208 NSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 267
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
L S Y ++ +A A + L WG LH++V+ P +D +V S L+++Y KCGC
Sbjct: 268 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGC------- 320
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------ 285
++A F + RN ++W VLI+ F Q G E F
Sbjct: 321 ---------------FKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAE 365
Query: 286 ------FFFVSLLSGCS-----------HSGPVTKGKHYFTAMAKFTYTCYFVC------ 322
F +L+SGC HS + G+ ++ + Y C
Sbjct: 366 LMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSA 425
Query: 323 -----------------MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH--- 362
M+ G + +A++ D M +K + W A+LGA H
Sbjct: 426 ESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTK-NVITWNAMLGAYIQHGAE 484
Query: 363 ------YNTKLAELVMR 373
YN L+E +R
Sbjct: 485 EDGLRMYNVMLSEKDVR 501
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 142/357 (39%), Gaps = 71/357 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ LH V + D +A + ++++ KCG A+
Sbjct: 280 CARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG------------- 326
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F + +R+ V+W +I+ +HG E++ F ++ L AT
Sbjct: 327 ---------VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATL 377
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK----- 236
S S DL G LHS + V V + LI MY K C+ ++S+ I +
Sbjct: 378 ISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK--CDNLQSAESIFRFMNEK 435
Query: 237 ------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE---------- 280
+++T +++ G+ KA F+ MS +N+I+W ++ A+ Q G E
Sbjct: 436 DIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVML 495
Query: 281 -----KPRFFFFFVSLLSGCSHSGPVTKGKHYF-----------TAMAKFTYTCYFVCMV 324
+P + +V+L GC+ G G T++A T Y C
Sbjct: 496 SEKDVRPD-WVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKC-- 552
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
G + EA+K+ D + K V W A++ H K A + ++L+ K
Sbjct: 553 ------GRILEARKVFDFLNVKDI-VSWNAMITGYSQHGMGKQAIEIFDDILKRGAK 602
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 105/259 (40%), Gaps = 29/259 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVY 189
+F +MP RD+ SWNT++S + +L +F+ + G ++ +A A + ++
Sbjct: 93 LFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALG 152
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG--- 246
+ L V D V + L+DM+++CG + S + + T++
Sbjct: 153 ERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLV 212
Query: 247 ---STQKADLAFEL---MSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
T D A EL M R+++SW +++SA SQ+G + +
Sbjct: 213 GYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTT 272
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEM 343
+ S L+ C+ + GK + + C +V+L G EAK + + +
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIR-NLPCIDPYVASALVELYAKCGCFKEAKGVFNSL 331
Query: 344 PSKPTCVIWGALLGACCSH 362
+ V W L+ H
Sbjct: 332 HDRNN-VAWTVLIAGFLQH 349
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/455 (26%), Positives = 191/455 (41%), Gaps = 96/455 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-------------LQLIDDDYRVFCDIGPR 47
++ C + + L I IHA ++ T L +F L+ RV I
Sbjct: 24 LECCSNARDLKI---IHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNP 80
Query: 48 YLFTYNTMING----------------GVR----------------CLCVGNIKMALHLH 75
LF YN +I G +R C + N M + H
Sbjct: 81 NLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTH 140
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII--------- 126
G K F D + S + M+ G ++ A S F RM + W I
Sbjct: 141 GQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAK 200
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F +MPER+LV+W+TMIS R+ + + TF L G + + S+ A
Sbjct: 201 SARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCA 260
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ L G H V+ + SL++ +G+ ++DMY +C G
Sbjct: 261 HLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARC----------------------G 298
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
+ +KA + FE + ++++ W LI+ + G EK ++F F ++L+
Sbjct: 299 NVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLT 358
Query: 294 GCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSH+G V +G F +M + ++ CMVDLLG +G L +A+K + +MP KP
Sbjct: 359 ACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNA 418
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IW ALLGAC H N ++ E V + LL++ + G
Sbjct: 419 PIWRALLGACRIHKNVEVGERVGKILLEMQPEYSG 453
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 164/363 (45%), Gaps = 52/363 (14%)
Query: 43 DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
DI P + +T + ++ R L V N K+ +HG V+K S+ + + ++ CG
Sbjct: 108 DISPDH-YTCSFVLKACSRLLDVRNGKI---VHGYVEKLGLQSNMFLQNMIVHLYALCGE 163
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIM---------FQKMPERDLVSWNTMISILTRH 153
+ A F +M + W I RL+ M F +MPER++ SW +MI +
Sbjct: 164 IGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQC 223
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E + F+E+ + G + + A A + +L G +H ++ V
Sbjct: 224 GKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVC 283
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+ LIDMY+KCGC +E + +I F+ M R ++SW +I+
Sbjct: 284 NTLIDMYVKCGC--LEDACRI--------------------FDNMEERTVVSWSAMIAGL 321
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTY 316
+ G E F F+ +L CSH G V KG+ YF +M +
Sbjct: 322 AAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPR 381
Query: 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CMVDL +GLL EA + I MP P V+WGALLG C H N KLAE R+L
Sbjct: 382 IEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLS 441
Query: 377 QLD 379
+LD
Sbjct: 442 KLD 444
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 166/351 (47%), Gaps = 48/351 (13%)
Query: 60 VRCLCVGNIKMALHLHGLV--KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
V C +GN+K +HG + +K S+ + + +DM+VKC V+ A F +
Sbjct: 172 VSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKD 231
Query: 118 LFCW--------KFGII-RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+ W K G + + + F +MP RD+VSWN++++ G +++
Sbjct: 232 IVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVM 291
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
++ + SA L+ G H V+ M+ LD F+GS LIDMY KCG
Sbjct: 292 EKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCG---- 347
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-- 286
S ++A F+ ++++++ W +I+ + G K F
Sbjct: 348 ------------------SIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSE 389
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLL 333
FVS+LS CSHSG V +G F++M + ++ C+VDLL SG L
Sbjct: 390 MQEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEPGVEHYGCLVDLLARSGRL 449
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
EAK +ID+MP KP+ IWGA+L AC + + +LAE+ R LL LD + G
Sbjct: 450 SEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDPEEEG 500
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 38/289 (13%)
Query: 124 GIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
G++RL +F+KMP D+VS+N MI + GFG E + F E+ G
Sbjct: 112 GLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLL 171
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSL--DVFVGSGLIDMYLKCGCNGIESSIQIGKAL-- 238
+ + ++++G +H + +P++ ++ +G+ L+DMY+K C +E +++ AL
Sbjct: 172 VSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVK--CQKVELALRTFGALKE 229
Query: 239 ---------VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------------ 277
V A+ G ++A L F M R+++SW L++ ++ G
Sbjct: 230 KDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDM 289
Query: 278 VLEK--PRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGL 332
V+EK P +SL+S + SG + +G+ H + + + ++D+ G
Sbjct: 290 VMEKVIPD-TVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGS 348
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSH-YNTKLAELVMRNLLQLDV 380
+ A ++ E+ +K +W ++ H Y +K EL +Q DV
Sbjct: 349 IERASRVFKEI-NKKDVTVWTTMITGLAFHGYGSKALELFSE--MQEDV 394
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 164/363 (45%), Gaps = 52/363 (14%)
Query: 43 DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
DI P + +T + ++ R L V N K+ +HG V+K S+ + + ++ CG
Sbjct: 108 DISPDH-YTCSFVLKACSRLLDVRNGKI---VHGYVEKLGLQSNMFLQNMIVHLYALCGE 163
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIM---------FQKMPERDLVSWNTMISILTRH 153
+ A F +M + W I RL+ M F +MPER++ SW +MI +
Sbjct: 164 IGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQC 223
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E + F+E+ + G + + A A + +L G +H ++ V
Sbjct: 224 GKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVC 283
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+ LIDMY+KCGC +E + +I F+ M R ++SW +I+
Sbjct: 284 NTLIDMYVKCGC--LEDACRI--------------------FDNMEERTVVSWSAMIAGL 321
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTY 316
+ G E F F+ +L CSH G V KG+ YF +M +
Sbjct: 322 AAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPR 381
Query: 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CMVDL +GLL EA + I MP P V+WGALLG C H N KLAE R+L
Sbjct: 382 IEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLS 441
Query: 377 QLD 379
+LD
Sbjct: 442 KLD 444
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 115/436 (26%), Positives = 182/436 (41%), Gaps = 103/436 (23%)
Query: 3 ACGSLKSLPIARKIHAQLI-----STCLISSIFLQL------IDDDYRVFCDIGPRYLFT 51
AC S +L ++I +I S + + L + + D +RVF I + +
Sbjct: 422 ACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA 481
Query: 52 YNTMINGGVR--------------------------------CLCVGNIKMALHLHGLVK 79
+N MI V+ C ++++ +H L+
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM 541
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
K SD ++ + + M V CG + A++ +F MP+RD
Sbjct: 542 KAGLESDLHVSNALVSMFVNCGDLMSAKN----------------------LFNDMPKRD 579
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
LVSWNT+I+ +HG F + G + + +A AS L G LH+
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+ DV VG+GLI MY KC GS + A F +
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKC----------------------GSIEDAHQVFHKLP 677
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKH 306
++N+ SW +I+ ++Q G ++ F+ FV LS C+H+G + +G H
Sbjct: 678 KKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLH 737
Query: 307 YFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
+F +M +F ++ CMVDL G +GLL EA + I +M +P +WGALLGAC H
Sbjct: 738 HFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHL 797
Query: 364 NTKLAELVMRNLLQLD 379
N +LAE + L+LD
Sbjct: 798 NVELAEKAAQKKLELD 813
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 66/348 (18%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T+ +M+N C N+ L+ L+ K + +D + + I+MH+KCG + A
Sbjct: 213 TFVSMLNA---CADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATK-- 267
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT-FIELWNH 169
+F +P RDLV+W +MI+ L RHG F+ C F +
Sbjct: 268 --------------------VFDNLPTRDLVTWTSMITGLARHG-RFKQACNLFQRMEEE 306
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + + + A LE G +H+R+ + +++VG+ ++ MY K C +E
Sbjct: 307 GVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTK--CGSME 364
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
++++ F+L+ RN++SW +I+ F+Q G +++ FF
Sbjct: 365 DALEV--------------------FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKM 404
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLL 333
F+S+L CS + +G+ + + Y LL + G L
Sbjct: 405 IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSL 464
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+A ++ +++ SK V W A++ A H A + LL+ +K
Sbjct: 465 KDAHRVFEKI-SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/441 (18%), Positives = 165/441 (37%), Gaps = 106/441 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
++AC ++L +K+HA++ + I++ ++D VF + R +
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378
Query: 50 FT--------------------YNTMINGGVR------------CLCVGNIKMALHLHGL 77
+ +N MI G+ C +K +
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ + + SD+ + + + M+ KCG++ A +F+K+ +
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHR----------------------VFEKISK 476
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+++V+WN MI+ +H L TF L G +S + + + S LE G +
Sbjct: 477 QNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H + +K G +ES + + ALV+M+ G A F
Sbjct: 537 HF-------------------LIMKAG---LESDLHVSNALVSMFVNCGDLMSAKNLFND 574
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTK 303
M +R+++SW +I+ F Q G + F +F F LL+ C+ +T+
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGK-NQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTE 633
Query: 304 GKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
G+ + + + C + L+ + G + +A ++ ++P K W +++
Sbjct: 634 GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKK-NVYSWTSMITGYA 692
Query: 361 SHYNTKLAELVMRNLLQLDVK 381
H K A + + Q VK
Sbjct: 693 QHGRGKEALELFYQMQQEGVK 713
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/346 (18%), Positives = 133/346 (38%), Gaps = 64/346 (18%)
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
Y TY+ ++ C+ N+ ++ +KK D + + I+M+ KCG A+
Sbjct: 109 YRQTYSALLQ---LCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAK 165
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
+F M E+D+ SWN ++ +HG E ++
Sbjct: 166 Q----------------------IFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ + +A A +++ G L++ ++ D+FVG+ LI+M++KCG G
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
+ + F+ + R++++W +I+ ++ G ++ F
Sbjct: 264 DATKV----------------------FDNLPTRDLVTWTSMITGLARHGRFKQACNLFQ 301
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SG 331
FVSLL C+H + +GK M + + +L + G
Sbjct: 302 RMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCG 361
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+ +A ++ D + + V W A++ H A L +++
Sbjct: 362 SMEDALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 155/344 (45%), Gaps = 63/344 (18%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM++ C + ++ +HG + F S++ + + ++M+ KCG V+ A
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYK----- 378
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F++MP++++V+WN +IS ++HG E L FIE+ G
Sbjct: 379 -----------------LFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKP 421
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
S + A A LE G +H + +V VG+GL+D+Y KC
Sbjct: 422 DSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKC---------- 471
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
G+ A FE M ++++SW +I A+ G E F
Sbjct: 472 ------------GNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETG 519
Query: 287 ------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGE 335
F ++L+ CSH+G V +G YF M K Y ++ C+VDLLG +G L E
Sbjct: 520 TKLDHIAFTAILTACSHAGLVDQGLQYFQCM-KSDYGLAPKLEHYACLVDLLGRAGHLDE 578
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A +I M +P +WGALLGAC H N +L E ++L +LD
Sbjct: 579 ANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELD 622
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 125/317 (39%), Gaps = 61/317 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +++ +H + F SD + + M+ KCG+++ A
Sbjct: 130 CGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQ------------- 176
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +MP+RD+VSWN +I+ +++G +E L F E+ +G +S +
Sbjct: 177 ---------VFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSV 227
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + LE G +H + DV V +GL++MY KC
Sbjct: 228 MPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKC------------------ 269
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G+ A FE M R++ SW +I +S + FF
Sbjct: 270 ----GNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITM 325
Query: 289 VSLLSGCSHSGPVTKGK--HYFTAMAKF-TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
VS+L C+H + +G+ H + + F + +V++ G + A KL + MP
Sbjct: 326 VSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPK 385
Query: 346 KPTCVIWGALLGACCSH 362
K V W A++ H
Sbjct: 386 K-NVVAWNAIISGYSQH 401
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 39/237 (16%)
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+ V W I ++GF + L + ++ G +++ + A S DL+ G
Sbjct: 82 RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H ++ G ES + +G AL +MY + GS + A F+
Sbjct: 142 VHEDII----------------------ARGFESDVIVGTALASMYTKCGSLENARQVFD 179
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303
M +R+++SW +I+ +SQ G + F VS++ C+H + +
Sbjct: 180 RMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQ 239
Query: 304 GK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
GK H + + V +V++ G + A KL + MP + W A++G
Sbjct: 240 GKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVAS-WNAIIG 295
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 161/341 (47%), Gaps = 42/341 (12%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL--- 118
C+ + + + +H + + + D + + +D++ KCG +D A F ++ S
Sbjct: 378 CVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASW 437
Query: 119 ------FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
FC G+ + F K+PE+D+VSWNTM++ +H E+ F ++ +
Sbjct: 438 NSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVK 497
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC------- 225
+ S+ A V L G ++ + E +D +G+ LIDMY KCGC
Sbjct: 498 PDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEI 557
Query: 226 --NGIESSIQIGKALVTMYA-EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
IE ++ + A++ YA EG + + DL E+ R GV KP
Sbjct: 558 FTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEER----------------GV--KP 599
Query: 283 RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKK 338
F++LL+ CSH G V +G YF + F ++ CMVDLLG G L E K
Sbjct: 600 D-HVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVK 658
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
I+ MP +P IW +L+ AC SH+N +LAE + L+++D
Sbjct: 659 FIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEID 699
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 136/321 (42%), Gaps = 50/321 (15%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
++K+ +HG + K F ++S+ + + ++ KCG +
Sbjct: 148 DVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLK---------------------- 185
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+ +F+KM RD++SWNTMIS G E L F E+ G + + S A
Sbjct: 186 EVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCA 245
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-----------CNGIESSIQIG 235
+ DLE G LH +V + + + + L+DMY KCG C+ E + +
Sbjct: 246 KLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLW 305
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRF---- 284
LV+ Y + KA F+ M+ R+++SW ++S + Q G + ++ RF
Sbjct: 306 TTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVI 365
Query: 285 --FFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKL 339
V++LS C H G+ H F + ++DL G L EA +
Sbjct: 366 PDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRT 425
Query: 340 IDEMPSKPTCVIWGALLGACC 360
+++P K + W ++L C
Sbjct: 426 FEQLPCK-SAASWNSMLDGFC 445
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 43/241 (17%)
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E + + WNT++ + G E L + + G L + A +D++ G
Sbjct: 95 EPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSE 154
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H R++ + + + L+ +Y KCG ++ Q+ FE
Sbjct: 155 VHGRILKCGFGRNKSLNNNLMGLYSKCG--KLKEVCQL--------------------FE 192
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303
M+ R++ISW +IS + G+ + F VSL+S C+ +
Sbjct: 193 KMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEM 252
Query: 304 GKH---YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLI---DEMPSKPTCVIWGALLG 357
GK Y + C+VD+ G + EA L+ DE S+ V+W L+
Sbjct: 253 GKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDE--SEVDVVLWTTLVS 310
Query: 358 A 358
Sbjct: 311 G 311
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 115/436 (26%), Positives = 182/436 (41%), Gaps = 103/436 (23%)
Query: 3 ACGSLKSLPIARKIHAQLI-----STCLISSIFLQL------IDDDYRVFCDIGPRYLFT 51
AC S +L ++I +I S + + L + + D +RVF I + +
Sbjct: 422 ACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA 481
Query: 52 YNTMINGGVR--------------------------------CLCVGNIKMALHLHGLVK 79
+N MI V+ C ++++ +H L+
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM 541
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
K SD ++ + + M V CG + A++ +F MP+RD
Sbjct: 542 KAGLESDLHVSNALVSMFVNCGDLMSAKN----------------------LFNDMPKRD 579
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
LVSWNT+I+ +HG F + G + + +A AS L G LH+
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+ DV VG+GLI MY KC GS + A F +
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKC----------------------GSIEDAHQVFHKLP 677
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKH 306
++N+ SW +I+ ++Q G ++ F+ FV LS C+H+G + +G H
Sbjct: 678 KKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLH 737
Query: 307 YFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
+F +M +F ++ CMVDL G +GLL EA + I +M +P +WGALLGAC H
Sbjct: 738 HFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHL 797
Query: 364 NTKLAELVMRNLLQLD 379
N +LAE + L+LD
Sbjct: 798 NVELAEKAAQKKLELD 813
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 66/348 (18%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T+ +M+N C N+ L+ L+ K + +D + + I+MH+KCG + A
Sbjct: 213 TFVSMLNA---CADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATK-- 267
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT-FIELWNH 169
+F +P RDLV+W +MI+ L RHG F+ C F +
Sbjct: 268 --------------------VFDNLPTRDLVTWTSMITGLARHG-RFKQACNLFQRMEEE 306
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + + + A LE G +H+R+ + +++VG+ ++ MY K C +E
Sbjct: 307 GVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTK--CGSME 364
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
++++ F+L+ RN++SW +I+ F+Q G +++ FF
Sbjct: 365 DALEV--------------------FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKM 404
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLL 333
F+S+L CS + +G+ + + Y LL + G L
Sbjct: 405 IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSL 464
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+A ++ +++ SK V W A++ A H A + LL+ +K
Sbjct: 465 KDAHRVFEKI-SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/441 (18%), Positives = 165/441 (37%), Gaps = 106/441 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
++AC ++L +K+HA++ + I++ ++D VF + R +
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378
Query: 50 FT--------------------YNTMINGGVR------------CLCVGNIKMALHLHGL 77
+ +N MI G+ C +K +
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ + + SD+ + + + M+ KCG++ A +F+K+ +
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHR----------------------VFEKISK 476
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+++V+WN MI+ +H L TF L G +S + + + S LE G +
Sbjct: 477 QNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H + +K G +ES + + ALV+M+ G A F
Sbjct: 537 HF-------------------LIMKAG---LESDLHVSNALVSMFVNCGDLMSAKNLFND 574
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTK 303
M +R+++SW +I+ F Q G + F +F F LL+ C+ +T+
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGK-NQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTE 633
Query: 304 GKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
G+ + + + C + L+ + G + +A ++ ++P K W +++
Sbjct: 634 GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKK-NVYSWTSMIAGYA 692
Query: 361 SHYNTKLAELVMRNLLQLDVK 381
H K A + + Q VK
Sbjct: 693 QHGRGKEALELFYQMQQEGVK 713
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/346 (18%), Positives = 133/346 (38%), Gaps = 64/346 (18%)
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
Y TY+ ++ C+ N+ ++ +KK D + + I+M+ KCG A+
Sbjct: 109 YRQTYSALLQ---LCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAK 165
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
+F M E+D+ SWN ++ +HG E ++
Sbjct: 166 Q----------------------IFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ + +A A +++ G L++ ++ D+FVG+ LI+M++KCG G
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
+ + F+ + R++++W +I+ ++ G ++ F
Sbjct: 264 DATKV----------------------FDNLPTRDLVTWTSMITGLARHGRFKQACNLFQ 301
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SG 331
FVSLL C+H + +GK M + + +L + G
Sbjct: 302 RMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCG 361
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+ +A ++ D + + V W A++ H A L +++
Sbjct: 362 SMEDALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 178/381 (46%), Gaps = 63/381 (16%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D+ +F ++ R +FT+ TM++G + G + +A +K + V E S
Sbjct: 192 LDEARELFDEMKVRNVFTWTTMVSGYAKN---GRVDVA-------RKLFEVMPERNEVSW 241
Query: 94 IDM---HVKCGAVDYAESAFLRM-----LNPSLFCWKFGII----RLLIMFQKMPERDLV 141
M + + G + A F M + + +FG+ R +MF+ M ERD
Sbjct: 242 TAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEG 301
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
+WN MI + R G E L F + G L+ + S AS+ L+ G +H+R+
Sbjct: 302 TWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARL 361
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
V E D++V S LI MY+KCG +A F +
Sbjct: 362 VRSEFDQDLYVASVLITMYVKCG----------------------DLVRAKGIFNRFLFK 399
Query: 262 NMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYF 308
+++ W +I+ +SQ G+ E+ F F+ +LS CS+SG V +G F
Sbjct: 400 DVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIF 459
Query: 309 TAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
AM K TY ++ CMVDLLG +G + EA +L+++MP +P ++WGALLGAC +H
Sbjct: 460 EAM-KCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHM 518
Query: 364 NTKLAELVMRNLLQLDVKVFG 384
LAE+ + L +L+ K G
Sbjct: 519 KLDLAEVAVEKLAKLEPKNAG 539
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-- 286
+ +I A+V+ Y E + A L F+ M +RN +S+ +IS + + G++ R F
Sbjct: 49 QRTIASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDV 108
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKL 339
+ S++ G G V + + F M + + V + LL S + +AKKL
Sbjct: 109 MPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKES-RIDDAKKL 167
Query: 340 IDEMPSKPTCVIWGALLGAC 359
D +P K V+ + G C
Sbjct: 168 FDMIPEKDVVVVTNMIGGYC 187
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MPER++VSW +M+ + G E F E+ +S + + + D
Sbjct: 105 VFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV-VSWTVMIGGLLKESRIDD 163
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIGK-----ALVTM 241
+ ++ M P DV V + +I Y + G + +++ +V+
Sbjct: 164 AK-------KLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSG 216
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
YA+ G A FE+M RN +SW ++ ++Q+G +++
Sbjct: 217 YAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKE 256
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 41/231 (17%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+P+R + SWN M+S Y + R ++ +
Sbjct: 47 LPQRTIASWNAMVSA----------------------------YFESHKPRDALLLFDQM 78
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
P ++ V + +V +G++ K E ++ ++V Y + G ++A+
Sbjct: 79 PQRNT--VSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKL 136
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV---------SLLSGCSHSGPVTKGK 305
F M RRN++SW V+I + ++ + F + +++ G G + + +
Sbjct: 137 FWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEAR 196
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
F M K + MV +G + A+KL + MP + V W A+L
Sbjct: 197 ELFDEM-KVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNE-VSWTAML 245
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/440 (25%), Positives = 186/440 (42%), Gaps = 106/440 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KAC L L + KIH ++ +F++ ++D ++VF DI + +
Sbjct: 119 LKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNV 178
Query: 50 FTYNTMINGGV--------------------------------RCLCVGNIKMALHLHGL 77
++ +I+G + C +G++ +H
Sbjct: 179 VSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKC 238
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ + V + + S +DM+ KCG ++ A S +F MPE
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARS----------------------VFDGMPE 276
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D+VSW MI +G E + F+++ SA A + LE G +
Sbjct: 277 KDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWV 336
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
V E + +G+ LID+Y KC GS +A F+
Sbjct: 337 SGLVDRNEFLYNPVLGTALIDLYAKC----------------------GSMSRAWEVFKG 374
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTK 303
M ++ + W +IS + G + K F F F+ LL GC+H+G V +
Sbjct: 375 MKEKDRVVWNAIISGLAMNGYV-KISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDE 433
Query: 304 GKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G+ YF +M +F ++ CMVDLLG +GLL EA +LI MP + ++WGALLGAC
Sbjct: 434 GRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGAC 493
Query: 360 CSHYNTKLAELVMRNLLQLD 379
H +T+LAEL ++ L++L+
Sbjct: 494 RIHRDTQLAELALKQLIELE 513
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 139/352 (39%), Gaps = 64/352 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ ++ R L ++++ + +H LV K F D + S + ++ KCG ++ A
Sbjct: 113 FTFPFVLKACARLL---DLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHK- 168
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F +P++++VSW +IS G E + F L
Sbjct: 169 ---------------------VFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEM 207
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
S SA + DL G +H ++ M +VFVG+ L+DMY KC
Sbjct: 208 NLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKC------ 261
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
G+ +KA F+ M ++++SW +I ++ G+ ++ F
Sbjct: 262 ----------------GNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM 305
Query: 288 -----------FVSLLSGCSHSGPVTKGKHY--FTAMAKFTYTCYF-VCMVDLLGLSGLL 333
V +LS C+ G + G+ +F Y ++DL G +
Sbjct: 306 QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSM 365
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
A ++ M K V+W A++ + K++ + + +L +K G+
Sbjct: 366 SRAWEVFKGMKEKDR-VVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGN 416
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 39/242 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++ + ++ WNTMI L + + + + + + GF ++ + A A + D
Sbjct: 68 LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G +H+ VV DVFV + L+ +Y KCG Y E
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCG-----------------YLE-----D 165
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-----RFF--------FFFVSLLSGCSH 297
A F+ + +N++SW +IS + G + R F V +LS C+
Sbjct: 166 AHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQ 225
Query: 298 SGPVTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G + G+ M +VD+ G + +A+ + D MP K V WGA
Sbjct: 226 LGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDI-VSWGA 284
Query: 355 LL 356
++
Sbjct: 285 MI 286
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 116/420 (27%), Positives = 189/420 (45%), Gaps = 68/420 (16%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYLFTY 52
C + ++L + R+IH +I + L + L LI+ D Y VF + R + ++
Sbjct: 597 CKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSW 656
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
MI G G + A L ++ F +S S + + +D +
Sbjct: 657 TAMIGGFAD---QGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAH 713
Query: 113 MLNPSLFCWKFGIIRLLI--------------MFQKMPERDLVSWNTMISILTRHGFGFE 158
+LN S + G+ LI +F KMP RD++SWN MI+ ++G G
Sbjct: 714 ILN-SGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGT 772
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
L ++ G L+ + + +A +S LE G +H+ +V + DV VG+ LI
Sbjct: 773 ALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALIS 832
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
MY KC GS ++A F+ + +N+++W +I+A++Q G+
Sbjct: 833 MYAKC----------------------GSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGL 870
Query: 279 LEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTC-YFV 321
K FF F S+LS C+HSG V +G F+++ + T ++
Sbjct: 871 ASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYG 930
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
C+V LLG +G EA+ LI++MP P +W LLGAC H N LAE N L+L+ +
Sbjct: 931 CLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNAR 990
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 60/289 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H + + S+ +A + ++M+ +CG++ A++ +F+
Sbjct: 508 IHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQN----------------------VFE 545
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
RD++SWN+MI+ +HG F+E+ G + +A+ + LE
Sbjct: 546 GTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALEL 605
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H ++ LDV +G+ LI+MY++C GS Q A
Sbjct: 606 GRQIHMLIIESGLQLDVNLGNALINMYIRC----------------------GSLQDAYE 643
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGP 300
F + RN++SW +I F+ G K F+ F S+L C S
Sbjct: 644 VFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSAC 703
Query: 301 VTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+ +GK + Y T ++ SG + +A+K+ D+MP++
Sbjct: 704 LDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNR 752
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 44/188 (23%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
I+M+VKC +V A FL KMP RD++SWN++IS +
Sbjct: 124 INMYVKCRSVSDAHQVFL----------------------KMPRRDVISWNSLISCYAQQ 161
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
GF + F E+ GF S + Y + +A S +LE+G +HS+++ D V
Sbjct: 162 GFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQ 221
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+ L++MY K C + S+ Q+ F + RR+++S+ ++ +
Sbjct: 222 NSLLNMYGK--CEDLPSARQV--------------------FSGIYRRDVVSYNTMLGLY 259
Query: 274 SQAGVLEK 281
+Q +E+
Sbjct: 260 AQKAYVEE 267
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/416 (18%), Positives = 161/416 (38%), Gaps = 104/416 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
++ C +SL A++IHAQ++ + IFL + + D ++VF + R +
Sbjct: 89 VQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDV 148
Query: 50 FTYNTMIN----GGVR----------------------------CLCVGNIKMALHLHGL 77
++N++I+ G + C ++ +H
Sbjct: 149 ISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSK 208
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ + + D + S ++M+ KC + A F GI R
Sbjct: 209 IIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVF------------SGIYR---------- 246
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VS+NTM+ + + + E + F ++ + G + Y A + L+ G +
Sbjct: 247 RDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRI 306
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H V+ + D+ VG+ L M+++C G A A E
Sbjct: 307 HKLAVNEGLNSDIRVGTALATMFVRC----------------------GDVAGAKQALEA 344
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKG 304
+ R+++ + LI+A +Q G E+ ++ ++S+L+ CS S + G
Sbjct: 345 FADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG 404
Query: 305 KHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ + +++ ++ ++ + G L A++L + MP K + W A++
Sbjct: 405 ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIA 459
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 73/271 (26%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT +M++ G R +H L SD + + M V+CG V A+ A
Sbjct: 294 FTTPSMLDEGKR------------IHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQA 341
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ +RD+V +N +I+ L +HG E + ++ +
Sbjct: 342 L----------------------EAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSD 379
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ Y + +A ++ L G +HS + + S DV +G+ LI MY +C
Sbjct: 380 GVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARC------ 433
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS--------------- 274
G +A F M +R++ISW +I+ ++
Sbjct: 434 ----------------GDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQM 477
Query: 275 QAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK 305
Q+ ++ R F LLS C++S + GK
Sbjct: 478 QSEGVKPGRVTFLH--LLSACTNSSAYSDGK 506
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 91/246 (36%), Gaps = 57/246 (23%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H + + SD I S I M+ +CG + A +F
Sbjct: 407 IHSHISEVGHSSDVQIGNSLISMYARCGDLPRARE----------------------LFN 444
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
MP+RDL+SWN +I+ R E + + ++ + G + + SA +
Sbjct: 445 TMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSD 504
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H ++ +GI+S+ + AL+ MY GS +A
Sbjct: 505 GKMIHEDILR----------------------SGIKSNGHLANALMNMYRRCGSIMEAQN 542
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGP 300
FE R++ISW +I+ +Q G E F F S+L GC +
Sbjct: 543 VFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEA 602
Query: 301 VTKGKH 306
+ G+
Sbjct: 603 LELGRQ 608
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 196/424 (46%), Gaps = 87/424 (20%)
Query: 13 ARKIHAQLISTCLIS-----SIFLQ--LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCV 65
ARK+ ++ T IS S ++Q +I + +VF + R + ++ MI G V+
Sbjct: 13 ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQ---- 68
Query: 66 GNIKMALHLHGLVKK----FYFVSDESIAKSSIDMH--VKCGAVDYAESAFLRMLNPSL- 118
GL+++ F+ + + ++ ++ + ++ G VD A F M +
Sbjct: 69 ---------EGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVV 119
Query: 119 --------FCWKFGIIRLLIMFQKMPERDLV-------------SWNTMISILTRHGFGF 157
C + +I +F +MP+R++V +W+TMI I R GF
Sbjct: 120 ASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFEL 179
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E L F + G S + S S+ L+ G +HS++V + +D++V S LI
Sbjct: 180 EALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLI 239
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
MY+KCG LVT A F+ S ++++ W +I+ ++Q G
Sbjct: 240 TMYIKCG------------DLVT----------AKRVFDRFSSKDIVMWNSIIAGYAQHG 277
Query: 278 VLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAM-AKFTY---TCYF 320
EK F F+ +LS CS++G V +G F +M +K+ T ++
Sbjct: 278 FGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHY 337
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
CMVDLLG +G L EA LI+ MP + ++WGALLGAC +H N LAE+ + LLQL+
Sbjct: 338 ACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEP 397
Query: 381 KVFG 384
G
Sbjct: 398 NNAG 401
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLL 292
Y + ++A F+ M N ISW L+S + Q G++ + R F + +++
Sbjct: 4 YFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMI 63
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
G G + + + F M + + V + L+ G + EA++L D MP K
Sbjct: 64 RGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIE-DGRVDEARQLFDMMPVKDVVAST 122
Query: 353 GALLGACCS 361
+ G C
Sbjct: 123 NMIDGLCSE 131
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 160/357 (44%), Gaps = 72/357 (20%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
Y+ M+ G R C G+++ + +HG V+ S+ ++ + + M+ K
Sbjct: 433 YDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAK 492
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
CG+++ A+SAF + +DLVSWN MI +HG G E
Sbjct: 493 CGSLELAKSAF----------------------EASGRKDLVSWNAMIGAYAQHGLGREA 530
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
L + + + G + A++ SA A L+ G +HSRV+ +
Sbjct: 531 LDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQS------------- 577
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
SS+ + ALV MY G + A FE M +R+++SW + SA++Q G
Sbjct: 578 --------FRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHA 629
Query: 280 EKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVC 322
++ + F S+L GCSH+G + +G F M +F+C
Sbjct: 630 DQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLC 689
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MVDLLG SG L +A+ L++ MP +P V W +LG+C +H + A+ R + +LD
Sbjct: 690 MVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELD 746
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 77/353 (21%)
Query: 38 YRVFCDIGPR-YLFTYNTMINGGVRCLCVGNIKMALHLHG-LVKKFYFVSDE-SIAKSSI 94
Y C+ GP TY ++ C VG+++ A +H +++ + D S+ + +
Sbjct: 132 YHRMCEEGPEPDKITYFIVLGS---CSAVGSLREAREIHASIIEAPQIIRDNLSLQNALV 188
Query: 95 DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG 154
+M+ KCG+V+ A +F + RD VSW +MIS +G
Sbjct: 189 NMYGKCGSVEEARK----------------------VFDGIKNRDAVSWTSMISSYANNG 226
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
F E L + ++ G S+ + +A A + D G +H+R+V D FVGS
Sbjct: 227 FCDEALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMESD-FVGS 282
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
LI+MY +C G A AFE + ++++ W L++A+
Sbjct: 283 ALINMYARC----------------------GDVSSARQAFEKIQNKHVVCWTSLMTAYV 320
Query: 275 QA----------GVLEKPRFF---FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV 321
Q G ++ +V+ L C+ G + +GK A+ + C F
Sbjct: 321 QTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGK----AIHSRVFECGFQ 376
Query: 322 CMV------DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+V + G L A+ + + + K W A++ A +T+ A
Sbjct: 377 SLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEA 429
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 129/314 (41%), Gaps = 62/314 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +K +H V + F S + + + M+ KCG +D A + F R+
Sbjct: 354 CASLGALKEGKAIHSRVFECGFQS-LVVHTALLTMYAKCGELDAARAVFNRVRQ------ 406
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+R++ W MIS + G E L + ++ G + ++
Sbjct: 407 ---------------KRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNV 451
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A +S DLE G +H V + E + +V V + L+ MY KCG S+++ K+
Sbjct: 452 LAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCG------SLELAKS---- 501
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
AFE R++++SW +I A++Q G+ + +
Sbjct: 502 ------------AFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTI 549
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
S LS C+ SG + G+ + + K + +V++ G G L A+ + ++M
Sbjct: 550 ASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMG 609
Query: 345 SKPTCVIWGALLGA 358
+ + W A+ A
Sbjct: 610 QRDV-LSWTAMTSA 622
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 93/418 (22%), Positives = 152/418 (36%), Gaps = 104/418 (24%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQL-------------IDDDYRVFCDIGPRYL 49
+C ++ SL AR+IHA +I I L L +++ +VF I R
Sbjct: 153 SCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDA 212
Query: 50 FTYNTMI-----NG---------------GVR---------CLCVGNIKMALHLHGLVKK 80
++ +MI NG G++ L + +H +
Sbjct: 213 VSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVS 272
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
SD + + I+M+ +CG V A AF ++ N + CW
Sbjct: 273 SNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCW------------------- 312
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
++++ + E L + + + G + Y TA A AS+ L+ G +HSR
Sbjct: 313 ---TSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSR 369
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF-ELMS 259
V +CG S+ + AL+TMYA+ G A F +
Sbjct: 370 V-------------------FECGFQ----SLVVHTALLTMYAKCGELDAARAVFNRVRQ 406
Query: 260 RRNMISWMVLISAFSQAG------------VLEKPR-FFFFFVSLLSGCSHSGPVTKGKH 306
+RN+ W +ISA++QAG V E R + F ++L+ CS SG + G
Sbjct: 407 KRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMK 466
Query: 307 YFTAMAKFTYTCYFVCMVDLLGLSGLLG--EAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ L+ + G E K E + V W A++GA H
Sbjct: 467 IHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQH 524
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 28/196 (14%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+ AC S L KIH + ++ L S++ +Q ++ F G + L
Sbjct: 452 LAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDL 511
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++N MI + G + AL L+ + + DE SS+ G++
Sbjct: 512 VSWNAMIGAYAQH---GLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREI 568
Query: 110 FLRMLNPSLFCWKFGIIRLLI--------------MFQKMPERDLVSWNTMISILTRHGF 155
R+L F + L+ MF+ M +RD++SW M S + G
Sbjct: 569 HSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGH 628
Query: 156 GFETLCTFIELWNHGF 171
+ L ++E+ HG
Sbjct: 629 ADQVLDLYLEMVLHGI 644
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/291 (18%), Positives = 107/291 (36%), Gaps = 62/291 (21%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
I M+ CG + A +AF F I+ + +N M+S ++
Sbjct: 84 IQMYGNCGEIHLARAAF----------QNFASIKAV-----------ACYNQMLSAYGKN 122
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G L + + G + Y + ++V L +H+ ++ P +
Sbjct: 123 GLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEA-PQI----- 176
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
I ++ + ALV MY + GS ++A F+ + R+ +SW +IS++
Sbjct: 177 --------------IRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSY 222
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF 320
+ G ++ + F S L C+ + GK + F
Sbjct: 223 ANNGFCDEALDLYQQMDADGIQPDSITFTSALLACT---KLVDGKAIHARIVSSNMESDF 279
Query: 321 V--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS--HYNTKL 367
V ++++ G + A++ +++ +K V W +L+ A HY L
Sbjct: 280 VGSALINMYARCGDVSSARQAFEKIQNKHV-VCWTSLMTAYVQTCHYREAL 329
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 167/344 (48%), Gaps = 61/344 (17%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII------ 126
H L+ F F D ++ + +DM+ KCG + A + F + + ++ W I
Sbjct: 99 HQQALI--FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQND 156
Query: 127 ---RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG------FGLSSML 177
R L +F M ERD++SWN++I++ ++G E++ F + G LS++L
Sbjct: 157 DAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVL 216
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
A A S + G +H +V+ M G+ES++ +G +
Sbjct: 217 LACAHSGSQRL-----GKCIHDQVIKM----------------------GLESNVFVGTS 249
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---------- 287
++ MY + G + A AF+ M +N+ SW +++ + G ++ F+
Sbjct: 250 IIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPN 309
Query: 288 ---FVSLLSGCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLI 340
FVS+L+ CSH+G + +G H+F AM+ +F ++ CMVDLLG +G L EA LI
Sbjct: 310 YITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLI 369
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
M +P V+WGALLGAC H N L E+ R L +LD K G
Sbjct: 370 KGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCG 413
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 118/283 (41%), Gaps = 34/283 (12%)
Query: 119 FCWKFGIIR------LLIMFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
F WK R L +F K ++ ++ SWN++I+ L R G E L F +
Sbjct: 13 FSWKIYRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSL 72
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG------- 224
+ + A + +++ DL G H + + D+FV S L+DMY KCG
Sbjct: 73 KPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDART 132
Query: 225 --CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEK 281
+I +++T Y + +A F+ M+ R++ISW +I+ ++Q G+ E
Sbjct: 133 LFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTES 192
Query: 282 PRFFFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKFT-YTCYFV--CMVD 325
F V ++L C+HSG GK + K + FV ++D
Sbjct: 193 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 252
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ G + A+K D M K W A++ H + K A
Sbjct: 253 MYCKCGKVEMARKAFDRMREK-NVKSWSAMVAGYGMHGHAKEA 294
>gi|224031691|gb|ACN34921.1| unknown [Zea mays]
gi|414879789|tpg|DAA56920.1| TPA: tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 49/369 (13%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
RV D FT+ T++ L V ++ + LH K S+ + + +D +
Sbjct: 31 RVLADGVAPNEFTFGTVLRSAT-ALRVRAPRVGVQLHACAAKLGLCSNVFVGSALLDHYA 89
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMISI 149
K GA+ A+ A P++ + I LL +F++MPER++VSWN MI
Sbjct: 90 KMGAMTEAQRALDDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMIGG 149
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
++ G G E + F+E+ G + + ++ AS L G +H+ + LD
Sbjct: 150 YSQAGLGEEAVNLFLEMCRGGVSPNESTFPCVLTSVASAGTLGVGRSIHASAIKFLGKLD 209
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
V++G+ L+ Y +CG +E S+ LAF+ ++R+N++SW L
Sbjct: 210 VYIGNSLVSFYARCGS--LEDSV--------------------LAFKKINRKNVVSWNAL 247
Query: 270 ISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK--- 313
I ++Q G E+ + + LL GC+H+G V +G F +
Sbjct: 248 ICGYAQNGKGEEALDAYRMMRATGLKPDNVTLLGLLFGCNHTGLVDEGYALFKTAEREQP 307
Query: 314 -FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
++ C+VDLL + EA++ ++E+P +P W ALLG C H+N+KLAE V
Sbjct: 308 GILKPEHYACVVDLLSRAKRFDEARRFLEELPFEPGIGFWKALLGGCQIHWNSKLAESVA 367
Query: 373 RNLLQLDVK 381
+ + LD K
Sbjct: 368 KRIRALDPK 376
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 11/164 (6%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS--VYDLE 192
MP RD++S I LTR G + L F + G + + T + + V
Sbjct: 1 MPHRDVISATAAIGALTRGGRHRDALALFSRVLADGVAPNEFTFGTVLRSATALRVRAPR 60
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYA 243
G LH+ + +VFVGS L+D Y K G + E ++ AL+
Sbjct: 61 VGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIAGLL 120
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
+ G +AD F M RN++SW +I +SQAG+ E+ F
Sbjct: 121 KNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFL 164
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 152/337 (45%), Gaps = 61/337 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +++ +H K +D +A IDM+ KCG V A+
Sbjct: 428 CSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQ-------------- 473
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
I+F M ERD+V WN+MIS L H E F ++ +G + YA+
Sbjct: 474 --------IIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASM 525
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
++ A + + G +H++V+ +V+VGS LIDMY KC
Sbjct: 526 INSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKC------------------ 567
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G+ A L F M +N+++W +I ++Q G EK F F
Sbjct: 568 ----GNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTF 623
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+++L+GCSHSG V + YF +M ++ C++D LG +G E +ID+MP
Sbjct: 624 IAVLTGCSHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMP 683
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
K ++W LL AC H+N +L E ++L +LD K
Sbjct: 684 YKDDAILWEVLLAACVVHHNAELGEFAAKHLFRLDPK 720
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/407 (20%), Positives = 151/407 (37%), Gaps = 93/407 (22%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMIN---GGVRCLCVGN------IKMALHLHGLVKKFYFV 84
+DD R+F + + ++ G C G+ I++A +H LV + F
Sbjct: 224 VDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFD 283
Query: 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---------------FGIIRLL 129
SD+ + S IDM+ K +D A F M + S+ W ++ L+
Sbjct: 284 SDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLM 343
Query: 130 -----------------------------IMFQKMPERDLVSWNTMISILTRHGFGFETL 160
MF K+ + + +WNT++S + +T+
Sbjct: 344 QESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTI 403
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F + + A S + + LE G +HS V + D+FV SGLIDMY
Sbjct: 404 ELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMY 463
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KCG GI A + F +M+ R+++ W +IS + + E
Sbjct: 464 SKCGQVGI----------------------AQIIFNMMTERDVVCWNSMISGLAIHSLNE 501
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMV 324
+ FF + S+++ C+ + +G+ + K Y ++
Sbjct: 502 EAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLI 561
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL-GACCSHYNTKLAEL 370
D+ G + +A+ + M K V W ++ G + + K EL
Sbjct: 562 DMYAKCGNMDDARLFFNCMIVK-NIVAWNEMIHGYAQNGFGEKAVEL 607
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 22/160 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+ +MP+R+ VSWNT+I+ + R E L + + G ++ A+ SA +V
Sbjct: 98 LLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAA 157
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G H V + + FV +GL+ MY KC GS
Sbjct: 158 LDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKC----------------------GSVAD 195
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS 290
A F+ MS N +S+ ++ +Q+G ++ F +S
Sbjct: 196 AVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMS 235
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 36/220 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V + HGL K ++ + + M+ KCG+V A
Sbjct: 152 CGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADA--------------- 196
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+RL F M + VS+ M+ L + G + L F + + + ++
Sbjct: 197 ----VRL---FDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSV 249
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A G + +R + + S+ V G +S +G +L+ M
Sbjct: 250 LGACAQAC---AGDYNVARAIRLAQSIHALVVR-----------KGFDSDQHVGNSLIDM 295
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
YA+G +A FE MS +++SW +L++ + Q G E+
Sbjct: 296 YAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYER 335
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 158/346 (45%), Gaps = 53/346 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF----------- 110
C V N++M +HGL K S+ + I ++ CG + A F
Sbjct: 280 CSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLIS 339
Query: 111 -LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
M++ L C +L F MPE+D+VSW+ MIS +H E L F E+ H
Sbjct: 340 WNSMISGYLRCGSIQDAEML--FYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLH 397
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G +A SA + L+ G +H+ + + ++V + + LIDMY+KCGC +E
Sbjct: 398 GVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGC--VE 455
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+++++ F M + + +W +I + G +E+ F
Sbjct: 456 NALEV--------------------FYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADM 495
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
F+ +L C H G V G+HYF +M ++ CMVDLLG +GL
Sbjct: 496 KKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGL 555
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
L EA++LID MP P WGALLGAC H + ++ E + R L+QL
Sbjct: 556 LKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQL 601
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 126/297 (42%), Gaps = 38/297 (12%)
Query: 97 HVKCGAVDYAESAFLRMLNP---------SLFCWKFGIIRLLIMFQ--KMPERDLVSWNT 145
+V+ G V+ AE F M +LF K + + +F + ERD+VSW+
Sbjct: 181 YVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSA 240
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
M+S ++ G E L F+E+ G + ++ +A SA + V ++E G +H V +
Sbjct: 241 MVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVG 300
Query: 206 PSLDVFVGSGLIDMYLKCG---------CNGIESSIQIG-KALVTMYAEGGSTQKADLAF 255
V + + LI +Y CG +G E I ++++ Y GS Q A++ F
Sbjct: 301 VEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLF 360
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVT 302
M ++++SW +IS ++Q + F VS +S C+H +
Sbjct: 361 YSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLD 420
Query: 303 KGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
GK H + + K ++D+ G + A ++ M K W A++
Sbjct: 421 LGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVST-WNAVI 476
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 30/191 (15%)
Query: 105 YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
Y+ F + NP+ F W I+R + Q P + L+ + ++ +
Sbjct: 56 YSLRIFNHLRNPNTFTWN-TIMRAHLYLQNSPHQALLHYKLFLASHAK------------ 102
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
+ +L A AR S ++ G LH+ V DV+V + L+++Y CG
Sbjct: 103 ---PDSYTYPILLQCCA--ARVSEFE---GRQLHAHAVSSGFDGDVYVRNTLMNLYAVCG 154
Query: 225 CNG-----IESSIQIG----KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
G E S + L+ Y + G ++A+ FE M RN I+ +I+ F +
Sbjct: 155 SVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGR 214
Query: 276 AGVLEKPRFFF 286
G +EK R F
Sbjct: 215 KGCVEKARRIF 225
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 185/439 (42%), Gaps = 103/439 (23%)
Query: 18 AQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVR---------------- 61
A+++ C S + + +D +++F + R F++NT+I G
Sbjct: 59 AEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEM 118
Query: 62 -------------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
C G I+ +HGL K+ F DE + + + M+V CG
Sbjct: 119 MSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGF 178
Query: 103 VDYAESAFL--------------RMLNPSLFCWKF---GIIRL------LIMFQKMPERD 139
+ A F R + + W G +RL ++F KM +R
Sbjct: 179 MKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRS 238
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSWNTMIS + +GF + + F E+ + + + A + + LE G LH
Sbjct: 239 VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL 298
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+D +GS LIDMY KCG IE +I + FE +
Sbjct: 299 YAEDSGIRIDDVLGSALIDMYSKCGI--IEKAIHV--------------------FERLP 336
Query: 260 RRNMISWMVLISAFS----------------QAGVLEKPRFFFFFVSLLSGCSHSGPVTK 303
R N+I+W +I+ F+ QAGV +++LL+ CSH G V +
Sbjct: 337 RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD---VAYINLLTACSHGGLVEE 393
Query: 304 GKHYFTAMAKFT----YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G+ YF+ M ++ CMVDLLG SGLL EA++ I MP KP VIW ALLGAC
Sbjct: 394 GRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGAC 453
Query: 360 CSHYNTKLAELVMRNLLQL 378
N ++ + V L+ +
Sbjct: 454 RMQGNVEMGKRVANILMDM 472
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 128/447 (28%), Positives = 195/447 (43%), Gaps = 91/447 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLIS------TCLISSIFL-----QLIDDDYRVFCDIGPRYL 49
+KAC + A +HAQ I C+ ++I +LI +VF DI R +
Sbjct: 144 LKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTI 203
Query: 50 FTYNTMING--------------------GVRC--------LCVGNIKMALHLHGLVKKF 81
++N+MI G GV L + L L V +
Sbjct: 204 VSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLY 263
Query: 82 YFVS----DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLL 129
++ D + + IDM+ KCG + +A+ F +ML+ + W G++
Sbjct: 264 IVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENA 323
Query: 130 I-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+ +F MP +++VSWN++I L + G E + F + G + S ++
Sbjct: 324 VQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNT 383
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
DL G H + ++ V + + LIDMY KC G+
Sbjct: 384 GDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKC----------------------GAL 421
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
Q A F M +N++SW V+I A + G E+ F F LLS C
Sbjct: 422 QTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSAC 481
Query: 296 SHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SHSG V G++YF M + F + ++ CMVDLLG G LGEA LI +MP KP V+
Sbjct: 482 SHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVV 541
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQL 378
WGALLGAC + N ++A+ +M+ LL+L
Sbjct: 542 WGALLGACRIYGNLEIAKQIMKQLLEL 568
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 119/437 (27%), Positives = 179/437 (40%), Gaps = 105/437 (24%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYLFT 51
AC +L R+IH ++I I+ ++ + D VF I + +
Sbjct: 416 ACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVA 475
Query: 52 YNTMINGGVR--------------------------------CLCVGNIKMALHLHGLVK 79
+N MI V+ C +++ + L+
Sbjct: 476 WNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLII 535
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
+ F SD I + + M V CG ++ + +F MPERD
Sbjct: 536 RAGFESDLHIRNALVSMFVNCG----------------------DLMSAMNLFNDMPERD 573
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
LVSWNT+I+ +HG F + G + + +A AS L G LH+
Sbjct: 574 LVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHA 633
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+ DV VG+GLI MY KC GS A L F +
Sbjct: 634 LITEAALDCDVVVGTGLISMYTKC----------------------GSIDDAHLVFHNLP 671
Query: 260 RRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVSLLSGCSHSGPVTKGK 305
++N+ SW +I+ ++Q G LE KP + FV LS C+H+G + +G
Sbjct: 672 KKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPD-WITFVGALSACAHAGLIKEGL 730
Query: 306 HYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
H+F +M F ++ CMVDL G +GLL EA + I++M KP +WGALLGAC H
Sbjct: 731 HHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVH 790
Query: 363 YNTKLAELVMRNLLQLD 379
+ +LAE V + L+LD
Sbjct: 791 LDVELAEKVAQKKLELD 807
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 146/352 (41%), Gaps = 68/352 (19%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
+Y F Y M+N C N+ L L+ + +D + + I+MH+KCG VD A
Sbjct: 205 KYTFVY--MLNA---CADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDA 259
Query: 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE- 165
L +F +P RDL++W +MI+ L RH F+ C +
Sbjct: 260 ----------------------LKVFNNLPRRDLITWTSMITGLARHR-QFKQACNLFQV 296
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
+ G + + + A LE G +H+R+ +
Sbjct: 297 MEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEV--------------------- 335
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
G+++ I +G AL++MY + GS + A F L+ RN++SW +I+ F+Q G +E+ F
Sbjct: 336 -GLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLF 394
Query: 286 F-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL--- 329
F F+S+L CS + +G+ + K Y LL +
Sbjct: 395 FNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAK 454
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
G L +A+ + + + SK V W A++ A H A + LL+ +K
Sbjct: 455 CGSLMDARNVFERI-SKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIK 505
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/440 (18%), Positives = 161/440 (36%), Gaps = 104/440 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KAC ++L +++HA++ L + I++ ++D VF + R +
Sbjct: 313 LKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNV 372
Query: 50 FT--------------------YNTMINGGVR------------CLCVGNIKMALHLHGL 77
+ +N MI G+ C +K +H
Sbjct: 373 VSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDR 432
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ K +++D+ + + + M+ KCG++ A + +F+++ +
Sbjct: 433 IIKAGYITDDRVRTALLSMYAKCGSLMDARN----------------------VFERISK 470
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+++V+WN MI+ +H + TF L G S + + + S LE G +
Sbjct: 471 QNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWV 530
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
S ++ G ES + I ALV+M+ G A F
Sbjct: 531 QSLIIRA----------------------GFESDLHIRNALVSMFVNCGDLMSAMNLFND 568
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M R+++SW +I+ F Q G + +F F LL+ C+ +T+G
Sbjct: 569 MPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEG 628
Query: 305 KHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+ + + C V L+ + G + +A + +P K W +++
Sbjct: 629 RRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKK-NVYSWTSMITGYAQ 687
Query: 362 HYNTKLAELVMRNLLQLDVK 381
H K A + + Q VK
Sbjct: 688 HGRGKEALELFCQMQQEGVK 707
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/342 (19%), Positives = 131/342 (38%), Gaps = 62/342 (18%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY++++ C+ N+ +H +K D + I M+ KCG + A+
Sbjct: 106 TYSSLLQ---LCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQ-- 160
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+F +MP++D+ SWN ++ +H E ++ G
Sbjct: 161 --------------------IFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDG 200
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ +A A +++ G L S +++ D+FVG+ LI+M++KCG G++
Sbjct: 201 VKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCG--GVDD 258
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---- 286
++++ F + RR++I+W +I+ ++ ++ F
Sbjct: 259 ALKV--------------------FNNLPRRDLITWTSMITGLARHRQFKQACNLFQVME 298
Query: 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAK 337
FVSLL C+H + +GK M + LL + G +
Sbjct: 299 EEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSME 358
Query: 338 KLID--EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
++ + V W A++ H + A L +++
Sbjct: 359 DALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIE 400
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 139/364 (38%), Gaps = 55/364 (15%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+DD +VF ++ R L T+ +MI G R K A +L ++++ D+ S
Sbjct: 256 VDDALKVFNNLPRRDLITWTSMITGLARHR---QFKQACNLFQVMEEEGVQPDKVAFVSL 312
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK-------------MPERDL 140
+ A++ + RM L + LL M+ K + R++
Sbjct: 313 LKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNV 372
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSW MI+ +HG E F ++ G + + + + A + L+ G +H R
Sbjct: 373 VSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDR 432
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
++ G + ++ AL++MYA+ GS A FE +S+
Sbjct: 433 IIKA----------------------GYITDDRVRTALLSMYAKCGSLMDARNVFERISK 470
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK-- 305
+N+++W +I+A+ Q + F F S+L+ C + GK
Sbjct: 471 QNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWV 530
Query: 306 HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
A F + +V + G L A L ++MP + V W ++ H
Sbjct: 531 QSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPER-DLVSWNTIIAGFVQHGE 589
Query: 365 TKLA 368
+ A
Sbjct: 590 NQFA 593
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 159/344 (46%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
CL + ++ LHG+V+K F S+ + + ++ CG + A F +M + W
Sbjct: 138 CLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTW 197
Query: 122 KFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I +L+ +F +MPER++ SW +MI+ + G E + F ++ G
Sbjct: 198 NIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + +A A + L+ G +H +V + + LIDMY+KC
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKC--------- 308
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
G ++A FE M R ++SW +I + G E+ F
Sbjct: 309 -------------GCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQV 355
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
F+ LL CSH G +++G+ +F +M + ++ CMVDLL +GLL E
Sbjct: 356 GIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHE 415
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A + I MP KP V+WGALLGAC H N ++AE +++LL+LD
Sbjct: 416 AHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD 459
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/272 (19%), Positives = 107/272 (39%), Gaps = 36/272 (13%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN+ + L + + F L + + ++ A ++ DL G LH V
Sbjct: 96 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALVTMYAEGGSTQKADL 253
+ ++++ + ++ +Y CG G + + ++ + G + A
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F M RN+ SW +I+ + Q G ++ F V++L+ C+ G
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275
Query: 301 VTKG--------KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ G +H F + + T ++D+ G L EA K+ +EM + T V W
Sbjct: 276 LDLGMRIHEYSNRHGFKRNVRISNT-----LIDMYVKCGCLEEACKVFEEMEER-TVVSW 329
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
A++G H + A + ++ Q+ ++ G
Sbjct: 330 SAMIGGLAMHGRAEEALRLFSDMSQVGIEPNG 361
>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
gi|223942207|gb|ACN25187.1| unknown [Zea mays]
gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 885
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 168/364 (46%), Gaps = 54/364 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F T+I+G C ++ + LH L K + ++ S I M+ KC + AE+
Sbjct: 392 FALATLISG---CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAI 448
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M + W + + F M E+++++WN M+ +HG + L
Sbjct: 449 FRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGL 508
Query: 161 CTFIELWNHGFGLSS-MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ + + + + Y T F A + + G + R V + +D V + +I M
Sbjct: 509 RMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITM 568
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KC G +A F+ ++ ++++SW +I+ +SQ G+
Sbjct: 569 YSKC----------------------GRILEARKVFDFLNVKDIVSWNAMITGYSQHGMG 606
Query: 280 E--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFV 321
+ KP + + V++LSGCSHSG V +GK YF M + +F
Sbjct: 607 KQAIEIFDDILKRGAKPDYISY-VAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFS 665
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
CMVDLLG +G L EAK LID+MP KPT +WGALL AC H N +LAEL +++ +LD
Sbjct: 666 CMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSP 725
Query: 382 VFGS 385
GS
Sbjct: 726 DSGS 729
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 154/357 (43%), Gaps = 79/357 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +AL L +V+KF D +A + +DM V+CGAVD A F+R+ P++FC
Sbjct: 168 CGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCR 227
Query: 122 K---------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+G+ L +F MPERD+VSWN M+S L++ G E L +++ + G
Sbjct: 228 NSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 287
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
L S Y ++ +A A + L WG LH++V+ P +D +V S L+++Y K GC
Sbjct: 288 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC------- 340
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------ 285
++A F + RN ++W VLIS F Q G E F
Sbjct: 341 ---------------FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE 385
Query: 286 ------FFFVSLLSGCS-----------HSGPVTKGKHYFTAMAKFTYTCYFVC------ 322
F +L+SGC HS + G+ ++ + Y C
Sbjct: 386 LMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSA 445
Query: 323 -----------------MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
M+ G + +A++ D M S+ + W A+LGA H
Sbjct: 446 EAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGM-SEKNVITWNAMLGAYIQH 501
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 49/288 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + +R+ V+W +IS ++G E++ F ++ L AT S S D
Sbjct: 347 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 406
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK-----------ALV 239
L G LHS + V V + LI MY K C+ ++S+ I + +++
Sbjct: 407 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK--CDNLQSAEAIFRFMNEKDIVSWTSMI 464
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE---------------KPRF 284
T Y++ G+ KA F+ MS +N+I+W ++ A+ Q G E +P
Sbjct: 465 TAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD- 523
Query: 285 FFFFVSLLSGCSHSGPVTKGKHYF-----------TAMAKFTYTCYFVCMVDLLGLSGLL 333
+ +V+L GC+ G G T++A T Y C G +
Sbjct: 524 WVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKC--------GRI 575
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
EA+K+ D + K V W A++ H K A + ++L+ K
Sbjct: 576 LEARKVFDFLNVKDI-VSWNAMITGYSQHGMGKQAIEIFDDILKRGAK 622
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 37/257 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS---ARAS 187
+F +MP RD+ SWNT++S + +L TF+ + H G S + AF+ A S
Sbjct: 113 LFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSM--HRSGDS---WPNAFTLACAMKS 167
Query: 188 VYDLEWGP---HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
L W L + V + D V + L+DM+++CG + S + + TM+
Sbjct: 168 CGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCR 227
Query: 245 GG------STQKADLAFEL---MSRRNMISWMVLISAFSQAGVLEKPRFFFF-------- 287
T D A EL M R+++SW +++SA SQ+G + +
Sbjct: 228 NSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 287
Query: 288 -----FVSLLSGCSHSGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKL 339
+ S L+ C+ + GK + + + +V +V+L SG EAK +
Sbjct: 288 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGV 347
Query: 340 IDEMPSKPTCVIWGALL 356
+ + + V W L+
Sbjct: 348 FNSLHDRNN-VAWTVLI 363
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 147 bits (371), Expect = 8e-33, Method: Composition-based stats.
Identities = 106/379 (27%), Positives = 183/379 (48%), Gaps = 57/379 (15%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+++ R+F ++ R + +Y M++G + +G I+ A L + + VS +
Sbjct: 84 VEEASRLFEEMPRRNVISYTAMVDGYAK---IGEIEQARALFNCMPQKNVVSWTVM---- 136
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLVSWN 144
I +V+ G D AE+ F +M + ++ +C + + I+F ++P RDL SWN
Sbjct: 137 ISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWN 196
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
MI+ ++G G E L ++ G + +A +S+ L+ G H V+
Sbjct: 197 AMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLK- 255
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+G ES I I AL+TMY + GS ++LAF + +++
Sbjct: 256 ---------------------SGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVV 294
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
SW +I+AF++ G ++ F F+SLLS C H+G V + ++F +M
Sbjct: 295 SWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSM 354
Query: 312 AKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
+ +Y +F C+VD+L G + +A K+I EMP + C IWGALL AC H N K
Sbjct: 355 IE-SYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVK 413
Query: 367 LAELVMRNLLQLDVKVFGS 385
L EL + +++L+ + G+
Sbjct: 414 LGELAAKKIVELEPQNSGA 432
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 59/262 (22%), Positives = 106/262 (40%), Gaps = 28/262 (10%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
FQ MP+R+ SWN MIS L R+ E F E+ + + Y A + ++
Sbjct: 60 FQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR----NVISYTAMVDGYAKIGEI 115
Query: 192 EWGPHL-----HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
E L VV + +V +G D + +I A++T Y + G
Sbjct: 116 EQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEG 175
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
T KA + F+ + R++ SW +I+ ++Q G E+ +S+L+
Sbjct: 176 KTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLT 235
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYF-VC--MVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CS + +G+ + K Y +C ++ + G + +++ ++ P V
Sbjct: 236 ACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQI-DHPDVV 294
Query: 351 IWGALLGACCSH--YNTKLAEL 370
W A++ A H Y+ LA
Sbjct: 295 SWNAMIAAFARHGFYDRALASF 316
>gi|226501952|ref|NP_001151797.1| tetratricopeptide-like helical [Zea mays]
gi|195649749|gb|ACG44342.1| tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 167/359 (46%), Gaps = 51/359 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T++ L V ++ + LH K S+ + + +D + K GA+ A+ A
Sbjct: 42 FTFGTVLRSAT-ALRVRAPRVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRA 100
Query: 110 FLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETL 160
P++ + I LL +F++MPER++VSWN MI ++ G G E +
Sbjct: 101 LDDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAV 160
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F+E+ G + + ++ AS L G +H+ + LDV++G+ L+ Y
Sbjct: 161 NLFLEMCRGGVSPNESTFPCVLTSVASAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFY 220
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+CG +E S+ LAF+ ++R+N++SW LI ++Q G E
Sbjct: 221 ARCGS--LEDSV--------------------LAFKKINRKNVVSWNALICGYAQNGKGE 258
Query: 281 --------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVC 322
KP + LL GC+H+G V +G F + ++ C
Sbjct: 259 EALDAYRMMRATGLKPD-NLTLLGLLFGCNHTGLVDEGYALFKTAEREQPGILKPEHYAC 317
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+VDLL + EA++ ++E+P +P W ALLG C H+N+KLAE V + + LD K
Sbjct: 318 VVDLLSRAKRFDEARRFLEELPFEPGIGFWKALLGGCQIHWNSKLAESVAKRIRALDPK 376
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 11/164 (6%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS--VYDLE 192
MP RD++S I LTR G + L F + G + + T + + V
Sbjct: 1 MPHRDVISATAAIGALTRGGRHRDALALFSRVLAGGVAPNEFTFGTVLRSATALRVRAPR 60
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYA 243
G LH+ + +VFVGS L+D Y K G + E ++ AL+
Sbjct: 61 VGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIAGLL 120
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
+ G +AD F M RN++SW +I +SQAG+ E+ F
Sbjct: 121 KNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFL 164
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 159/344 (46%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
CL + ++ LHG+V+K F S+ + + ++ CG + A F +M + W
Sbjct: 138 CLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTW 197
Query: 122 KFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I +L+ +F +MPER++ SW +MI+ + G E + F ++ G
Sbjct: 198 NIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + +A A + L+ G +H +V + + LIDMY+KC
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKC--------- 308
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
G ++A FE M R ++SW +I + G E+ F
Sbjct: 309 -------------GCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQV 355
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
F+ LL CSH G +++G+ +F +M + ++ CMVDLL +GLL E
Sbjct: 356 GIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHE 415
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A + I MP KP V+WGALLGAC H N ++AE +++LL+LD
Sbjct: 416 AHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD 459
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/272 (19%), Positives = 107/272 (39%), Gaps = 36/272 (13%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN+ + L + + F L + + ++ A ++ DL G LH V
Sbjct: 96 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALVTMYAEGGSTQKADL 253
+ ++++ + ++ +Y CG G + + ++ + G + A
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F M RN+ SW +I+ + Q G ++ F V++L+ C+ G
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275
Query: 301 VTKG--------KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ G +H F + + T ++D+ G L EA K+ +EM + T V W
Sbjct: 276 LDLGMRIHEYSNRHGFKRNVRISNT-----LIDMYVKCGCLEEACKVFEEMEER-TVVSW 329
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
A++G H + A + ++ Q+ ++ G
Sbjct: 330 SAMIGGLAMHGRAEEALRLFSDMSQVGIEPNG 361
>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 865
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 168/364 (46%), Gaps = 54/364 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F T+I+G C ++ + LH L K + ++ S I M+ KC + AE+
Sbjct: 372 FALATLISG---CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAI 428
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M + W + + F M E+++++WN M+ +HG + L
Sbjct: 429 FRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGL 488
Query: 161 CTFIELWNHGFGLSS-MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ + + + + Y T F A + + G + R V + +D V + +I M
Sbjct: 489 RMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITM 548
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KC G +A F+ ++ ++++SW +I+ +SQ G+
Sbjct: 549 YSKC----------------------GRILEARKVFDFLNVKDIVSWNAMITGYSQHGMG 586
Query: 280 E--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFV 321
+ KP + + V++LSGCSHSG V +GK YF M + +F
Sbjct: 587 KQAIEIFDDILKRGAKPDYISY-VAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFS 645
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
CMVDLLG +G L EAK LID+MP KPT +WGALL AC H N +LAEL +++ +LD
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSP 705
Query: 382 VFGS 385
GS
Sbjct: 706 DSGS 709
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 154/357 (43%), Gaps = 79/357 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +AL L +V+KF D +A + +DM V+CGAVD A F+R+ P++FC
Sbjct: 148 CGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCR 207
Query: 122 K---------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+G+ L +F MPERD+VSWN M+S L++ G E L +++ + G
Sbjct: 208 NSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 267
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
L S Y ++ +A A + L WG LH++V+ P +D +V S L+++Y K GC
Sbjct: 268 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC------- 320
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------ 285
++A F + RN ++W VLIS F Q G E F
Sbjct: 321 ---------------FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE 365
Query: 286 ------FFFVSLLSGCS-----------HSGPVTKGKHYFTAMAKFTYTCYFVC------ 322
F +L+SGC HS + G+ ++ + Y C
Sbjct: 366 LMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSA 425
Query: 323 -----------------MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
M+ G + +A++ D M S+ + W A+LGA H
Sbjct: 426 EAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGM-SEKNVITWNAMLGAYIQH 481
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 49/288 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + +R+ V+W +IS ++G E++ F ++ L AT S S D
Sbjct: 327 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK-----------ALV 239
L G LHS + V V + LI MY K C+ ++S+ I + +++
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK--CDNLQSAEAIFRFMNEKDIVSWTSMI 444
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE---------------KPRF 284
T Y++ G+ KA F+ MS +N+I+W ++ A+ Q G E +P
Sbjct: 445 TAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD- 503
Query: 285 FFFFVSLLSGCSHSGPVTKGKHYF-----------TAMAKFTYTCYFVCMVDLLGLSGLL 333
+ +V+L GC+ G G T++A T Y C G +
Sbjct: 504 WVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKC--------GRI 555
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
EA+K+ D + K V W A++ H K A + ++L+ K
Sbjct: 556 LEARKVFDFLNVKDI-VSWNAMITGYSQHGMGKQAIEIFDDILKRGAK 602
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 37/257 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS---ARAS 187
+F +MP RD+ SWNT++S + +L TF+ + H G S + AF+ A S
Sbjct: 93 LFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSM--HRSGDS---WPNAFTLACAMKS 147
Query: 188 VYDLEWGP---HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
L W L + V + D V + L+DM+++CG + S + + TM+
Sbjct: 148 CGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCR 207
Query: 245 GG------STQKADLAFEL---MSRRNMISWMVLISAFSQAGVLEKPRFFFF-------- 287
T D A EL M R+++SW +++SA SQ+G + +
Sbjct: 208 NSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 267
Query: 288 -----FVSLLSGCSHSGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKL 339
+ S L+ C+ + GK + + + +V +V+L SG EAK +
Sbjct: 268 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGV 327
Query: 340 IDEMPSKPTCVIWGALL 356
+ + + V W L+
Sbjct: 328 FNSLHDRNN-VAWTVLI 343
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 167/364 (45%), Gaps = 45/364 (12%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
R+ C P +T+ +++ C + + +H + K + +D S I+ +
Sbjct: 105 RMLCSSAPHNAYTFPSLLKA---CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYA 161
Query: 99 KCGAVDYAESAFLRMLNPSLFCW--------KFGIIRL-LIMFQKMPERDLVSWNTMISI 149
G A F R+ P W K G + + L +F+KM E++ +SW TMIS
Sbjct: 162 VTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISG 221
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ E L F E+ N ++ A A SA A + LE G +HS + +D
Sbjct: 222 YVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMD 281
Query: 210 VFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
+G LIDMY KCG N + S+Q AL++ YA G ++A F M +
Sbjct: 282 SVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQK 341
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-- 318
+ KP F ++L+ CS++G V +GK F +M + Y
Sbjct: 342 MGI-----------------KPNVITF-TAVLTACSYTGLVEEGKLIFYSMER-DYNLKP 382
Query: 319 ---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ C+VDLLG +GLL EAK+ I EMP KP VIWGALL AC H N +L E + L
Sbjct: 383 TIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEIL 442
Query: 376 LQLD 379
+ +D
Sbjct: 443 IAID 446
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 181/378 (47%), Gaps = 55/378 (14%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+++ R+F ++ R + +Y M++G + +G I+ A L + + VS +
Sbjct: 156 VEEASRLFEEMPRRNVISYTAMVDGYAK---IGEIEQARALFNCMPQKNVVSWTVM---- 208
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLVSWN 144
I +V+ G D AE+ F +M + ++ +C + + I+F ++P RDL SWN
Sbjct: 209 ISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWN 268
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
MI+ ++G G E L ++ G + +A +S+ L+ G H V+
Sbjct: 269 AMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLK- 327
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+G ES I I AL+TMY + GS ++LAF + +++
Sbjct: 328 ---------------------SGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVV 366
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
SW +I+AF++ G ++ F F+SLLS C H+G V + ++F +M
Sbjct: 367 SWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSM 426
Query: 312 AK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
+ +F C+VD+L G + +A K+I EMP + C IWGALL AC H N KL
Sbjct: 427 IESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKL 486
Query: 368 AELVMRNLLQLDVKVFGS 385
EL + +++L+ + G+
Sbjct: 487 GELAAKKIVELEPQNSGA 504
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 140/383 (36%), Gaps = 47/383 (12%)
Query: 22 STCLISSIFLQLIDDDYRVFCDIG-----PRYLFTYNTMINGGVRCLCVGNIKMALHLHG 76
S +I +IFL + R F + + ++ +N I R GNI A L
Sbjct: 15 SPSIIRTIFLPIFHSFNRQFHPLSIKLFSTQDVYAFNVQIGNLAR---AGNIGAARQLFD 71
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIR 127
+ VS SI I + K G D ++ F M ++ W I
Sbjct: 72 EMPHRDTVSWNSI----ITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDE 127
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
FQ MP+R+ SWN MIS L R+ E F E+ + Y A
Sbjct: 128 AWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNV----ISYTAMVDGYAK 183
Query: 188 VYDLEWGPHL-----HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
+ ++E L VV + +V +G D + +I A++T Y
Sbjct: 184 IGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGY 243
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
+ G T KA + F+ + R++ SW +I+ ++Q G E+ +
Sbjct: 244 CKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLI 303
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE--AKKLIDEMPSKP 347
S+L+ CS + +G+ + K Y L+ + G +L P
Sbjct: 304 SVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHP 363
Query: 348 TCVIWGALLGACCSH--YNTKLA 368
V W A++ A H Y+ LA
Sbjct: 364 DVVSWNAMIAAFARHGFYDRALA 386
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 165/349 (47%), Gaps = 51/349 (14%)
Query: 62 CLCVGNIKMALHLHG-LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRML------ 114
C I+ L +H +VK+ + +D + + +DM+ KC V+ A F RM
Sbjct: 262 CASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVS 321
Query: 115 NPSLFC---WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
S+ C + +MF M E+++VSWN +I+ T++G E + F+ L
Sbjct: 322 ETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESI 381
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---CNGI 228
+ + +A A++ DL+ G H+++ LK G +G
Sbjct: 382 WPTHYTFGNLLNACANLADLKLGRQAHTQI-------------------LKHGFWFQSGE 422
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE---- 280
ES I +G +L+ MY + G + L FE M R+++SW +I ++Q G LE
Sbjct: 423 ESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRK 482
Query: 281 ------KPRFFFFFVSLLSGCSHSGPVTKGKHYF----TAMAKFTYTCYFVCMVDLLGLS 330
KP + +LS CSH+G V +G+ YF T + +F CMVDLLG +
Sbjct: 483 MLVSGQKPDHVTM-IGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRA 541
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
G L EA LI MP +P V+WG+LL AC H N +L + V L+++D
Sbjct: 542 GCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEID 590
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 142/336 (42%), Gaps = 49/336 (14%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------K 122
A +H + K F S+ I +D + KCG + A F RM + F + K
Sbjct: 38 ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97
Query: 123 FGII-RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
FG + +F+ MPE D SWN M+S +H E L F+++ + F L+ + +A
Sbjct: 98 FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSA 157
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A + DL G +H+ + LDV++GS L+DMY KCG
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVAC------------- 204
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
A AF+ M+ RN++SW LI+ + Q G K F
Sbjct: 205 ---------AQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITL 255
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFV---CMVDLLGLSGLLGEAKKLIDEMP 344
S++S C+ + +G + K Y V +VD+ + EA+ + D MP
Sbjct: 256 ASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMP 315
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
+ V +++ + K A L+ N+++ +V
Sbjct: 316 LR-NVVSETSMVCGYARAASVKAARLMFSNMMEKNV 350
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 162/373 (43%), Gaps = 59/373 (15%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
R F D+ F N G C G ++ M + +H L+ K ++ D + + +DM
Sbjct: 137 RFFVDMHSED-FVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDM 195
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ KCG V A+ A F M R++VSWN++I+ ++G
Sbjct: 196 YSKCGVVACAQRA----------------------FDGMAVRNIVSWNSLITCYEQNGPA 233
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSG 215
+ L F+ + ++G + A+ SA AS + G +H+RVV + D+ +G+
Sbjct: 234 GKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNA 293
Query: 216 LIDMYLKC-GCNGIE--------SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
L+DMY KC N ++ ++V YA S + A L F M +N++SW
Sbjct: 294 LVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSW 353
Query: 267 MVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAK 313
LI+ ++Q G E+ R F + F +LL+ C++ + G+ T + K
Sbjct: 354 NALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILK 413
Query: 314 FTY-------TCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL-GACCSHY 363
+ + FV ++D+ G++ + + + M + V W A++ G + Y
Sbjct: 414 HGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDV-VSWNAMIVGYAQNGY 472
Query: 364 NTKLAELVMRNLL 376
T E+ + L+
Sbjct: 473 GTNALEIFRKMLV 485
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 147 bits (370), Expect = 1e-32, Method: Composition-based stats.
Identities = 106/379 (27%), Positives = 182/379 (48%), Gaps = 57/379 (15%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+++ R+F ++ R + +Y M++G + +G I+ A L + + VS +
Sbjct: 156 VEEASRLFEEMPRRNVISYTAMVDGYAK---IGEIEQARALFNCMPQKNVVSWTVM---- 208
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLVSWN 144
I +V+ G D AE+ F +M + ++ +C + + I+F ++P RDL SWN
Sbjct: 209 ISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWN 268
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
MI+ ++G G E L ++ G + +A +S+ L+ G H V+
Sbjct: 269 AMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLK- 327
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+G ES I I AL+TMY + GS ++LAF + +++
Sbjct: 328 ---------------------SGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVV 366
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
SW +I+AF++ G ++ F F+SLLS C H+G V + ++F +M
Sbjct: 367 SWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSM 426
Query: 312 AKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
+Y +F C+VD+L G + +A K+I EMP + C IWGALL AC H N K
Sbjct: 427 IX-SYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVK 485
Query: 367 LAELVMRNLLQLDVKVFGS 385
L EL + +++L+ + G+
Sbjct: 486 LGELAAKKIVELEPQNSGA 504
Score = 55.8 bits (133), Expect = 4e-05, Method: Composition-based stats.
Identities = 85/386 (22%), Positives = 148/386 (38%), Gaps = 49/386 (12%)
Query: 22 STCLISSIFLQLIDDDYRVFCDIGPRY-----LFTYNTMINGGVRCLCVGNIKMALHLHG 76
S +I +IFL + R F + + ++ +N I R GNI A +
Sbjct: 15 SPSIIRTIFLPIFHSFNRQFHPLSIKLFSTQDVYAFNVQIGNLAR---AGNIGAARQVFD 71
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL------- 129
+ VS SI I + K G D ++ F M ++ W I +
Sbjct: 72 EMPHRDTVSWNSI----ITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDE 127
Query: 130 --IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
FQ MP+R+ SWN MIS L R+ E F E+ + + Y A
Sbjct: 128 AWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR----NVISYTAMVDGYAK 183
Query: 188 VYDLEWGPHL-----HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
+ ++E L VV + +V +G D + +I A++T Y
Sbjct: 184 IGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGY 243
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
+ G T KA + F+ + R++ SW +I+ ++Q G E+ +
Sbjct: 244 CKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLI 303
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF-VC--MVDLLGLSGLLGEAKKLIDEMPSK 346
S+L+ CS + +G+ + K Y +C ++ + G + +++ ++
Sbjct: 304 SVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQI-DH 362
Query: 347 PTCVIWGALLGACCSH--YNTKLAEL 370
P V W A++ A H Y+ LA
Sbjct: 363 PDVVSWNAMIAAFARHGFYDRALASF 388
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 189/413 (45%), Gaps = 76/413 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+KAC +++ ++H Q I L S +++ +I +VF R L
Sbjct: 147 LKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDL 206
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ TMI G V+ +G + + L+ +++ D + + +DM++KCG ++A
Sbjct: 207 VSWTTMIQGYVK---MGFAREGVGLY-IIRNSNVNLDVFVGNALVDMYLKCGDANFARK- 261
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+FQ+MP +++VSWN+MIS L + G E+L F ++
Sbjct: 262 ---------------------VFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRL 300
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + ++ A++ LE G +H+ + + D F+G+ L+DMY KC
Sbjct: 301 GVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKC------ 354
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
GS +A F+ M+R+++ S+ +I + G K F
Sbjct: 355 ----------------GSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEM 398
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
FV +L+ CSH G V +G+ YF M+ ++ CMVDLLG +GL
Sbjct: 399 PKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGL 458
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ EA++ I MP +P + GALLGAC H +L E VM+ + +++ + G+
Sbjct: 459 INEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGA 511
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 157/346 (45%), Gaps = 49/346 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ + +H V KF F+ + +D +VKCG V A F + PS+ W
Sbjct: 123 CSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSW 182
Query: 122 KF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL---WNH 169
G+ ++F +MPER+ V+W +I GF E E+
Sbjct: 183 TVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGF 242
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
GFGL+S+ + SA + D+ G +H V G +
Sbjct: 243 GFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAV---------------------GWD 281
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------------ 277
+ +G +LV MYA+ G A + F M RRN+++W ++ + G
Sbjct: 282 LGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACM 341
Query: 278 VLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLL 333
V E F++LLS CSHSG V +G YF + + ++ CMVDLLG +G L
Sbjct: 342 VEEVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRL 401
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA+ L+ ++P P V+ G+LLGAC +H +L E +MR L+Q+D
Sbjct: 402 EEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQMD 447
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 157/345 (45%), Gaps = 50/345 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G ++ +H + K F D S+ + +M+ KCG++ AE F +M N ++ W
Sbjct: 374 CTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAW 433
Query: 122 KFGIIRLLI----------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+ + I +F +MP R++VSWN MI+ ++G + + GF
Sbjct: 434 T-SFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGF 492
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ T A ++ LE G +H+ V + D V + LI MY KC
Sbjct: 493 QPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKC-------- 544
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF----- 285
G +A F+ MS R+ ++W +++ + Q G LE F
Sbjct: 545 --------------GQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLK 590
Query: 286 -------FFFVSLLSGCSHSGPVTKGKHYFTAMAK-FTYT---CYFVCMVDLLGLSGLLG 334
+++S CS +G V +G+ F M + F T ++ CMVDLLG +G L
Sbjct: 591 ERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQ 650
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA++ I MP +P +W ALLGAC SH N +LAE ++L+L+
Sbjct: 651 EAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELE 695
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 141/337 (41%), Gaps = 71/337 (21%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H +VK +D ++A + I M+ KCG + S+ C +F
Sbjct: 179 IHTIVKAMGMETDVAVATALITMYSKCGEI-------------SVACE---------VFH 216
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
KM ER++VSW +I +H E + ++ G +++ + + ++ + L
Sbjct: 217 KMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNR 276
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +HS + G+E+ + + AL+TMY + S Q+A
Sbjct: 277 GRRIHSHISE----------------------RGLETDMIVANALITMYCKCNSVQEARE 314
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKP-------------RFFFF-----FVSLLSGC 295
F+ MS+R++ISW +I+ ++Q+G +K R F F+S+L C
Sbjct: 315 IFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRAC 374
Query: 296 SHSGPVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ G + +G+ ++K + + ++ G + EA+++ +M +K V W
Sbjct: 375 TAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK-NVVAW 433
Query: 353 GALLG-----ACCSHYNTKLAELVMRNLLQLDVKVFG 384
+ L S +E+ RN++ ++ + G
Sbjct: 434 TSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAG 470
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 40/253 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++M RD+V+W++MI+ + + TF + + + + + + A +
Sbjct: 113 VFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSI 172
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H+ V M DV V + LI MY KCG + +
Sbjct: 173 LEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEV------------------ 214
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
F M+ RN++SW +I A +Q L + + FVSLL+ C+
Sbjct: 215 ----FHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNT 270
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGA 354
+ +G+ + +++ + L+ + + EA+++ D M SK + W A
Sbjct: 271 PEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRM-SKRDVISWSA 329
Query: 355 LL-GACCSHYNTK 366
++ G S Y K
Sbjct: 330 MIAGYAQSGYKDK 342
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 21/169 (12%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF- 285
G+E I +G +L+ Y++ A+ F M+ R++++W +I+A+ AG + F
Sbjct: 86 GVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAY--AGNNHPAKAFD 143
Query: 286 --------------FFFVSLLSGCSHSGPVTKGKHYFT---AMAKFTYTCYFVCMVDLLG 328
F+S+L C++ + KG+ T AM T ++ +
Sbjct: 144 TFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYS 203
Query: 329 LSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
G + A ++ +M + V W A++ A H A + +LQ
Sbjct: 204 KCGEISVACEVFHKMTER-NVVSWTAIIQANAQHRKLNEAFELYEQMLQ 251
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 126/453 (27%), Positives = 191/453 (42%), Gaps = 100/453 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGP-RY 48
+KAC ++ A H I + +F+ + D R+F ++ P R
Sbjct: 114 LKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRN 173
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKK-------FYFVS---------------- 85
+ ++NTMI G C G A L +++ F FVS
Sbjct: 174 VVSWNTMIGG---CAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRL 230
Query: 86 ------------DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGI 125
D + + +DM+ KCG + A F M ++ W K G
Sbjct: 231 VHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGS 290
Query: 126 IRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+ F++MPER+++SWN MIS + G ETL + + + G + A S
Sbjct: 291 VDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSV 350
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
DL G +H + V V + LIDMY +CG +++SI +
Sbjct: 351 HGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCG--QVDTSISL---------- 398
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
F M +N ISW V+I A + G ++ FF FV L
Sbjct: 399 ----------FTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGL 448
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
LS CSH G + G++YF AM + Y ++ CMVDLLG G L +A LI +MP K
Sbjct: 449 LSACSHGGLLEDGQYYFKAM-RHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMK 507
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P V+WGAL+GAC H + ++ +L ++ LL+L+
Sbjct: 508 PDVVVWGALIGACRIHGHVEIGKLAIKQLLELE 540
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 102/261 (39%), Gaps = 50/261 (19%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSSMLYATAFSAR 185
MF ++P+ D ++N++I + G E LC ++ G F L +L A + AR
Sbjct: 63 MFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACS-RAR 121
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A+ + L H + + VFVG+ AL+ A
Sbjct: 122 AAEHALA----THGVAIKLGYVRQVFVGN----------------------ALLHSSASA 155
Query: 246 GSTQKADLAF-ELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSL 291
GS + + F E+ RN++SW +I +QAG E F F FVSL
Sbjct: 156 GSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSL 215
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
L CS G + G+ M + +VD+ G G L A + D MP K
Sbjct: 216 LLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIK-N 274
Query: 349 CVIWGALLGACCSHYNTKLAE 369
V W ++L A H + A
Sbjct: 275 VVSWTSMLCALAKHGSVDAAR 295
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 118/438 (26%), Positives = 186/438 (42%), Gaps = 88/438 (20%)
Query: 2 KACGSLKSLPIARKI-----HAQLISTCLISSIFLQLI------DDDYRVFCDIGPRYLF 50
KAC L + + +I H S +S+ + L+ D ++F R L
Sbjct: 87 KACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLV 146
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
++N+MING VR C + ++ + H +
Sbjct: 147 SWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYI 206
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
++ +A + +DM++KCG ++ A F M N ++ W ++F +MP++
Sbjct: 207 EENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWT------TMLFDEMPDK 260
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
D+V WN MI G E L F E+ + + SA + + L+ G +H
Sbjct: 261 DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH 320
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ E SL+V +G+ LIDM YA+ G KA F+ +
Sbjct: 321 HYIEKHELSLNVALGTALIDM----------------------YAKCGKITKAIQVFQEL 358
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK 305
RN ++W +IS + G +F F+ LLS C H G V +G+
Sbjct: 359 PGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 418
Query: 306 HYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
YF+ M+ KF + ++ CMVDLLG +GLL EA++LI MP + V+WGAL AC
Sbjct: 419 KYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRI 478
Query: 362 HYNTKLAELVMRNLLQLD 379
H N + E LLQ+D
Sbjct: 479 HGNVLMGERAASKLLQMD 496
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 183/402 (45%), Gaps = 79/402 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYL 49
+KAC + L +H + S +F+Q L+D + RVF ++ R +
Sbjct: 17 VKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDV 76
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F + TMI+ R G++ A L + V + + + ID + + V+ AE
Sbjct: 77 FAWTTMISVHAR---TGDMSSARQLFDEMP----VRNTASWNAMIDGYSRLRNVESAE-- 127
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
++F +MP RD++SW TMI+ +++ E L F E+ +
Sbjct: 128 --------------------LLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTN 167
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + AT SA A + L+ G +H + M LDV++GS LIDMY KCG
Sbjct: 168 GIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGS---- 223
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+ K+LV + + ++N+ W +I + G E+ F
Sbjct: 224 ----LDKSLVVFFK--------------LRKKNLFCWNSIIEGLAVHGYAEEALAMFSRM 265
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGL 332
F+S+L C+H+G V +G+ F +M++ F+ ++ CMVDLLG +GL
Sbjct: 266 QREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGL 325
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374
L +A +L+ M +P VIWGALLG C H N K+A++ +
Sbjct: 326 LEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNE 367
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 171/373 (45%), Gaps = 67/373 (17%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM-- 96
R+F + R +FT+ M++G V+ +G++ + V D K+S+
Sbjct: 175 RLFEESPVRDVFTWTAMVSGYVQ-------------NGMLDEARRVFDGMPEKNSVSWNA 221
Query: 97 ----HVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSW 143
+V+C +D A F M ++ W I + F +MP+RD +SW
Sbjct: 222 IIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISW 281
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
+I+ + G+G E L F+E+ G L+ + + S A + LE G +H RVV
Sbjct: 282 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVV- 340
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
K G +ES +G AL+ MY + G+ A + FE + + +
Sbjct: 341 ------------------KAG---LESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEV 379
Query: 264 ISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTA 310
+SW +I+ +++ G ++ F V +LS CSH+G V KG YF +
Sbjct: 380 VSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYS 439
Query: 311 MAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
M + + ++ CM+DLLG +G L +A+ L+ MP +P WGALLGA H NT+
Sbjct: 440 MTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTE 499
Query: 367 LAELVMRNLLQLD 379
L E + + +++
Sbjct: 500 LGEKAAKMIFEME 512
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 124/323 (38%), Gaps = 68/323 (21%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSID---- 95
+F + R + ++N M++G + +G VK+ + DE K+SI
Sbjct: 52 LFDQMPERDVVSWNAMLSGYAQ-------------NGYVKEAKEIFDEMPCKNSISWNGM 98
Query: 96 --MHVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLVSWN 144
+V+ G ++ A F + L W + ++ +F +MPERD VSWN
Sbjct: 99 LAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWN 158
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
TMIS ++G E F E S + ++A S Y RV
Sbjct: 159 TMISGYAQNGELLEAQRLFEE--------SPVRDVFTWTAMVSGYVQNGMLDEARRVFDG 210
Query: 205 EPSLDVFVGSGLIDMYLKCG-------------CNGIESSIQIGKALVTMYAEGGSTQKA 251
P + + +I Y++C C + S ++T YA+ G +A
Sbjct: 211 MPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS----WNTMITGYAQNGDIAQA 266
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHS 298
F+ M +R+ ISW +I+ ++Q+G E+ F F S LS C+
Sbjct: 267 RNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI 326
Query: 299 GPVTKGK--HYFTAMAKFTYTCY 319
+ GK H A CY
Sbjct: 327 AALELGKQVHGRVVKAGLESGCY 349
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 163/346 (47%), Gaps = 48/346 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++ +A +H ++K D ++ + I + +CG++DYA F ++ W
Sbjct: 202 CGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVW 261
Query: 122 KFGIIRLL---------IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I + + +FQ MP+RD+VSWN+MI R G E L F E+ G
Sbjct: 262 NTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVS 321
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+++ + SA AS L+ G +H+ V + + D + S LIDMY KCG I+ ++
Sbjct: 322 PNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCG--DIDKAV 379
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
QI FE +RR++ +W ++ + G EK +F
Sbjct: 380 QI--------------------FEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEA 419
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
V +LS C+H+G + +G YF +M K ++ CMVDLLG G L E
Sbjct: 420 QVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKE 479
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
A LI MP + +IWGA L AC H N +L E+ R LL LD +
Sbjct: 480 AYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPR 525
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 93/260 (35%), Gaps = 44/260 (16%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+K +H V + F E ++ + + +V CG V F M P L W II
Sbjct: 106 EVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTL-II 164
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
R + PE+ L + TM + G + +T SA
Sbjct: 165 RAYVCV-TFPEKALELFRTMREV--------------------GLTPDMVAISTVVSACG 203
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKA 237
+ DL +H + +D FV S LI Y +CG +I +
Sbjct: 204 LLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNT 263
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---------- 287
++ E + + F+ M R+++SW +I F++ G ++ +F
Sbjct: 264 MIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPN 323
Query: 288 ---FVSLLSGCSHSGPVTKG 304
+S LS C+ G + G
Sbjct: 324 ALTLLSTLSACASHGALDTG 343
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 170/369 (46%), Gaps = 55/369 (14%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
R+ C P +T+ +++ C + ++ +H + K + +D S I+ +
Sbjct: 134 RMLCCSAPHNAYTFPSLLKA---CSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYA 190
Query: 99 KCGAVDYAESAFLRMLNPSLFCW--------KFGIIRL-LIMFQKMPERDLVSWNTMISI 149
G A F R+ P W K G + + L +F+KM E++ +SW TMIS
Sbjct: 191 ATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISG 250
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ G E L F E+ N ++ A A SA A + LE G +HS + +D
Sbjct: 251 YVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMD 310
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
+G LIDMY KCG +G+AL F+ + R+++ +W L
Sbjct: 311 SVLGCVLIDMYAKCG--------DMGEALEV--------------FKNIQRKSVQAWTAL 348
Query: 270 ISAFSQAG--------VLE------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315
IS ++ G +E KP F ++L+ CS++G V +GK F M +
Sbjct: 349 ISGYAYHGHGREAISKFMEMQKMGIKPNVITF-TTVLTACSYTGLVEEGKLIFYNMER-D 406
Query: 316 YTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
Y ++ C+VDLL +GLL EAK+ I EMP KP VIWGALL AC H N +L E
Sbjct: 407 YNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE 466
Query: 371 VMRNLLQLD 379
+ L+ +D
Sbjct: 467 IGEILIAID 475
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 196/439 (44%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KAC L++ + + +H ++ TC +++ + +D RVF ++ +
Sbjct: 149 LKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDV 208
Query: 50 FTYNTMIN---------------GGVR-----------------CLCVGNIKMALHLHGL 77
++ MI+ G +R C + N+++ +H
Sbjct: 209 IPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCH 268
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V K + ++ + +D++ KCG +D + + +F ++P
Sbjct: 269 VLKVGLDGNVFVSNALMDVYAKCGRLDNS----------------------MKLFMELPN 306
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R+ V+WNTMI + G G + L + + S + Y++ A AS+ +E G +
Sbjct: 307 RNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQI 366
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
HS + DV VG+ LIDMY KC GS + A L F++
Sbjct: 367 HSLSLKTIYDKDVVVGNALIDMYAKC----------------------GSIKNARLVFDM 404
Query: 258 MSRRNMISWMVLISAFSQAGVL-EKPRFF------------FFFVSLLSGCSHSGPVTKG 304
+S R+ ISW +IS +S G++ E + F FVS+LS CS++G + G
Sbjct: 405 LSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIG 464
Query: 305 KHYFTAMAKF--TYTC--YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
++YF +M + C ++ CMV LLG SG L +A KLI+E+P +P +W ALLGAC
Sbjct: 465 QNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACV 524
Query: 361 SHYNTKLAELVMRNLLQLD 379
H + L + + +LQ+D
Sbjct: 525 IHNDVDLGIMSAQQILQID 543
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 134/348 (38%), Gaps = 64/348 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F + T++ V C ++A LH + K S+ + + ID + CG+V+ A A
Sbjct: 42 FVFTTILKLLVSVECA---ELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQA 98
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F ++ C +D+VSW M++ + ++L F E+
Sbjct: 99 F-----DAIAC-----------------KDMVSWTGMVACYAENDRFQDSLQLFAEMRMV 136
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
GF + +A A + G +H V+ +D++VG GL+D+Y K
Sbjct: 137 GFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKF------ 190
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP------- 282
G FE M + ++I W +IS ++Q+ +
Sbjct: 191 ----------------GDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQM 234
Query: 283 -RFF-----FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT-CYFV--CMVDLLGLSGLL 333
R F F F S+L C+ + GK + K FV ++D+ G L
Sbjct: 235 RRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRL 294
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ KL E+P++ V W ++ + A + +N+L+ V+
Sbjct: 295 DNSMKLFMELPNRNE-VTWNTMIVGYVQSGDGDKALSLYKNMLECQVQ 341
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 39/238 (16%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP+R+ VS+ T+I + E + F + G L+ ++ T SV E
Sbjct: 1 MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
LH+ + + + FVG+ LID Y C GS A A
Sbjct: 61 YSLHACIYKLGHESNAFVGTALIDAYAVC----------------------GSVNSARQA 98
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPV 301
F+ ++ ++M+SW +++ +++ + + F F F +L C
Sbjct: 99 FDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAF 158
Query: 302 TKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAK---KLIDEMPSKPTCVIWGALL 356
+ GK + K Y V LL L G+A ++ +EMP K + W ++
Sbjct: 159 SVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMP-KHDVIPWSFMI 215
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 162/357 (45%), Gaps = 53/357 (14%)
Query: 50 FTYNTMINGGVRCLCVG-NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
FTY +I R C+ I+ +H V KF F +D + I M+V +++ A
Sbjct: 121 FTYPPLI----RACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARR 176
Query: 109 AFLRMLNPSLFCW--------KFGII-RLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
F M + W ++G + + +F+ MPER+ VSWN MI+ + E
Sbjct: 177 VFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEA 236
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
F + L + A+ SA + LE G +H + LD + + +IDM
Sbjct: 237 FALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDM 296
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KCGC +KA F + ++ + SW +I + G
Sbjct: 297 YCKCGC----------------------LEKASEVFNELPQKGISSWNCMIGGLAMHGKG 334
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVC 322
E F FV++LS C+HSG V +GKHYF M + +F C
Sbjct: 335 EAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGC 394
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MVDLLG +GLL EA+KLI+EMP P + GAL+GAC H NT+L E + + +++L+
Sbjct: 395 MVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 451
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 179/373 (47%), Gaps = 55/373 (14%)
Query: 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKS 92
LI+D ++F +I R + T+NTM+ G +C G+++ A+ L + + VS ++
Sbjct: 244 LIEDALKLFQEIPKRDVITWNTMMAGYAQC---GDVENAVELFEKMPEQNLVSWNTM--- 297
Query: 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSW 143
I +V+ G+V A F M ++ W + L +F+ MPE ++VSW
Sbjct: 298 -IAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSW 356
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
N MI+ +++G L F ++ ++ +A A A++ LE G H V+
Sbjct: 357 NAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIR 416
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
+G +S + +G LV MYA+ GS + A F+ M +++
Sbjct: 417 ----------------------SGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDS 454
Query: 264 ISWMVLISAFSQAG-------VLEKPRFFFF------FVSLLSGCSHSGPVTKGKHYFTA 310
S +I ++ G + E+ +F FV +LS C H+G V +G+ YF
Sbjct: 455 ASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDI 514
Query: 311 MAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
M +F + ++ CM+DLLG +G EA LI++MP KP +WG+LL AC +H N
Sbjct: 515 MTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNID 574
Query: 367 LAELVMRNLLQLD 379
L E V ++L+ L+
Sbjct: 575 LGEKVAQHLIALN 587
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 132/315 (41%), Gaps = 60/315 (19%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY++++ G + + + K+ LH H +++ + D S+ + ++VK G+
Sbjct: 66 TYDSLLQGCLNAKSLPDAKL-LHAH-MIQTQFECQDISLGNKLVSIYVKLGS-------- 115
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
++ +F +MP +++VSW MI+ RH G E L F E+ + G
Sbjct: 116 --------------LVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVG 161
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ +A+ A DLE H +V G ES
Sbjct: 162 IQPNHFTFASILPA---CTDLEVLGEFHDEIVK----------------------GGFES 196
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK--------- 281
++ +G LV MYA+ G + A F+ M +R+++SW +I+ + Q G++E
Sbjct: 197 NVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP 256
Query: 282 PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLID 341
R + ++++G + G V F M + + + + +G + EA KL
Sbjct: 257 KRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYV-QNGSVKEAFKLFQ 315
Query: 342 EMPSKPTCVIWGALL 356
MP + + W A++
Sbjct: 316 IMPER-NVISWNAVI 329
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 161/349 (46%), Gaps = 47/349 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +GN++M +H V++ S+ + +DM+VKC + A F RM ++ W
Sbjct: 368 CSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSW 427
Query: 122 --------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
K G + F + P ++ V W+ MI+ +++ E+L F E+ G
Sbjct: 428 TSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVV 487
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ SA + L G +H FV +I + S+
Sbjct: 488 PIEHTLVSVLSACGQLTCLNLGDWIH----------QYFVVGKIIPL-----------SV 526
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRFF 285
+ A+V MYA+ GS A F M RN+ISW +I+ ++ G V ++ R
Sbjct: 527 TLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNM 586
Query: 286 FF------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGE 335
F FVSLL+ CSH G +++G+ YF M + ++ CMVDLLG +GLL E
Sbjct: 587 GFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEE 646
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
A KLI MP +P WGALL AC H N +LA L NLL+LD + G
Sbjct: 647 AYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDSG 695
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 108/274 (39%), Gaps = 30/274 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + ++D+V+W TMI H E + F + + + SA + + +
Sbjct: 314 VFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGN 373
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTM 241
LE G +H +V + + + L+DMY+KC C + ++V
Sbjct: 374 LEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNG 433
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
YA+ G + A F+ R+N + W +I+ +SQ ++ F
Sbjct: 434 YAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTL 493
Query: 289 VSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMP 344
VS+LS C + G H + + K + +VD+ G + A ++ MP
Sbjct: 494 VSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMP 553
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELV---MRNL 375
+ + W ++ ++ K A V MRN+
Sbjct: 554 ER-NLISWNTMIAGYAANGRAKQAINVFDQMRNM 586
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 16/136 (11%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G + + + L+ YAE G + A F+ S +++++W +I ++ E+ F
Sbjct: 287 GFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVF 346
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLS 330
++++S CS G + GK + + C ++D+
Sbjct: 347 ELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKC 406
Query: 331 GLLGEAKKLIDEMPSK 346
L +A++L D M +K
Sbjct: 407 DCLVDARELFDRMATK 422
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 194/418 (46%), Gaps = 67/418 (16%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYLFT 51
AC K+L ARK+HA L S+ FL LI + +VF ++ + + +
Sbjct: 60 ACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVS 119
Query: 52 YNTMINGGVRC--------LCVGNIKMALHLHG-----LVKKFYFVSDESIAKSSIDMHV 98
+ ++I G + L G +K +G L+K +D I + + V
Sbjct: 120 WTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAV 179
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGF 157
KC D+ E ++ ++ + G++ + +F K+ ++ VSWN +IS R G G
Sbjct: 180 KC---DWHEDVYVGSALLDMYA-RCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGE 235
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
L TF E+ +GF + Y++ FS+ A + LE G +H+ ++ + F G+ L+
Sbjct: 236 TALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLL 295
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
D MYA+ GS A F+ + +++++W +++AF+Q G
Sbjct: 296 D----------------------MYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYG 333
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFV 321
+ ++ F F+ +L+ CSH G V +GK YF M ++ +FV
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFV 393
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+V LLG +GLL A I +MP +PT +WGALL AC H N K+ + ++ +LD
Sbjct: 394 TVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELD 451
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 39/220 (17%)
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ +Y T +A A +LE +H+ + + D F+ + LI +Y KC
Sbjct: 50 TPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKC---------- 99
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE----------KPR 283
GS +A F+ M R++M+SW LI+ ++Q + E K R
Sbjct: 100 ------------GSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGR 147
Query: 284 FF---FFFVSLL--SGCSHSGPVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAK 337
F F F SLL +G + + H + Y ++D+ G++ A
Sbjct: 148 FKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMAT 207
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+ D++ SK V W AL+ + + A + +L+
Sbjct: 208 AVFDKLDSK-NGVSWNALISGFARKGDGETALMTFAEMLR 246
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 178/378 (47%), Gaps = 56/378 (14%)
Query: 28 SIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE 87
+F +L++D V D TMI C +G++++ LH V
Sbjct: 208 ELFWRLVEDGKAVRPD--------EVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTV 259
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII---RLLIM------FQKMPER 138
+ + +DM+VKCG+++ A+S F R+ N ++ W I+ RL +M F +MPER
Sbjct: 260 RLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPER 319
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
D+ WN +++ ++ G E + F E+ + + SA + + LE G +H
Sbjct: 320 DVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVH 379
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ + +YL S+ +G +LV MYA+ G+ +KA F+ +
Sbjct: 380 HYIDRHQ-------------LYL---------SVALGTSLVDMYAKCGNIKKAICIFKEI 417
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK 305
+N ++W +I + G ++ +F F+ +LS C H+G V +G+
Sbjct: 418 PDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGR 477
Query: 306 HYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+F+ M + + ++ CM+DLLG +G L EA++L++ MP P V+WGAL AC
Sbjct: 478 QFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRM 537
Query: 362 HYNTKLAELVMRNLLQLD 379
H N L E L++LD
Sbjct: 538 HGNITLGEKAAMKLVELD 555
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 116/278 (41%), Gaps = 28/278 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL--SSMLYATAFSARASV 188
+F + P RD+VSWNT+I R G E L F L G + + A S A +
Sbjct: 178 LFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQM 237
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI--QIGKALV----TM- 241
DLE G LH V V + + ++DMY+KCG + S+ +I V TM
Sbjct: 238 GDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMI 297
Query: 242 --YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
+A G + A + F+ M R++ W L++ + Q ++ F
Sbjct: 298 VGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEI 357
Query: 288 -FVSLLSGCSHSGPVTKG---KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
V+LLS CS G + G HY + +VD+ G + +A + E+
Sbjct: 358 TMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEI 417
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
P K + W A++ +H + A + ++ L ++
Sbjct: 418 PDK-NALTWTAMICGLANHGHADEAIEYFQRMIDLGLQ 454
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 157/335 (46%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + +HG V + + + + +DM+ KCG +D +
Sbjct: 454 CASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSH-------------- 499
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM +D V+WN+MIS +++G E L F ++ G +++ ++A
Sbjct: 500 --------YIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSA 551
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA AS+ + +G +H ++ D+F S LIDMY KCG +E ++++
Sbjct: 552 LSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCG--NMELALRV------- 602
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
FE M +N +SW +ISA+ G++++ F F
Sbjct: 603 -------------FEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTF 649
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMP 344
++L+S C+H+G V +G F M K +F CMVDL SG L +A + I +MP
Sbjct: 650 LALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMP 709
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
KP IWGALL AC H N +LA++ + L +LD
Sbjct: 710 FKPDAGIWGALLHACRVHRNVELADIASQELFKLD 744
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 117/305 (38%), Gaps = 78/305 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+K+C +L ++ + R +H +T L S +++ L+ D F + R
Sbjct: 148 VKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDC 207
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
+N M++G ++ C ++ + LH L
Sbjct: 208 VLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSL 267
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K + ++A + + M+ KC +D A W+ +F+ +P
Sbjct: 268 AVKCGLEQEVAVANTLLSMYAKCRCLDDA--------------WR--------LFELLPR 305
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
DLV+WN MIS ++G E L F ++ G S+ + A + L+ G +
Sbjct: 306 DDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEV 365
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKC-----------GCNGIESSIQIGKALVTMYAEGG 246
H ++ +D F+ S L+D+Y KC I+ + IG +++ Y G
Sbjct: 366 HGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAID--VVIGSTVISGYVLNG 423
Query: 247 STQKA 251
++KA
Sbjct: 424 MSEKA 428
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 107/275 (38%), Gaps = 75/275 (27%)
Query: 1 MKACGSLKSLPIARKIHAQLIST-----CLISSIFLQL------IDDDYRVFCDIGPRYL 49
+ AC S+ +LP+ ++IH ++ C + S + + +D + +F + +
Sbjct: 451 LPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDE 510
Query: 50 FTYNTMI-----NGG-------VRCLCVGNIK--------------------MALHLHGL 77
T+N+MI NG R +C+ IK +HG+
Sbjct: 511 VTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGV 570
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ K +D + IDM+ KCG ++ A L +F+ MP+
Sbjct: 571 IIKGPIKADIFAESALIDMYAKCGNMELA----------------------LRVFEFMPD 608
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
++ VSWN++IS HG E++ + G+ + + SA A +E G L
Sbjct: 609 KNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQL 668
Query: 198 ----------HSRVVHMEPSLDVFVGSGLIDMYLK 222
R+ H +D++ SG +D ++
Sbjct: 669 FQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQ 703
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 83/225 (36%), Gaps = 44/225 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + +H + SD + + I M+ G + A AF
Sbjct: 151 CAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAF----------- 199
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
MP RD V WN M+ + G + F + G + A
Sbjct: 200 -----------DGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACF 248
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
S A+ DL G LHS V +V V + L+ MY KC C ++ + ++
Sbjct: 249 LSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRC--LDDAWRL------- 299
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
FEL+ R ++++W +IS Q G+L++ F
Sbjct: 300 -------------FELLPRDDLVTWNGMISGCVQNGLLDEALGLF 331
>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
Length = 528
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 163/331 (49%), Gaps = 64/331 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH L+ K F + + + +D + K G+ D + R + F
Sbjct: 74 LHALIAKIGFERNAGVVNTMLDSYAKGGSRD------------------LEVARKV--FD 113
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL--SSMLYATAFSARASVYDL 191
M ERD+VSWN+MI++ ++G E + + ++ N G G+ +++ + A A +
Sbjct: 114 TM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAI 172
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
+ G H+H++VV M G+E ++ +G ++V MY++ G + A
Sbjct: 173 QTGKHIHNQVVRM----------------------GLEENVYVGTSIVDMYSKCGRVEMA 210
Query: 252 DLAFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVSLLSGCSH 297
AF + +N++SW +I+ + G LE +P + F +S+L+ CSH
Sbjct: 211 SRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITF-ISVLAACSH 269
Query: 298 SGPVTKGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G + +G++++ AM + F ++ CMVDLLG +G L EA LI EM KP IWG
Sbjct: 270 AGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWG 329
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALL AC H N +LAE+ ++ L +LD G
Sbjct: 330 ALLSACRIHKNVELAEMSVKRLFELDASNSG 360
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 41/196 (20%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMIN--GGV 60
A G + L +ARK+ + + + + L + IG Y+ M+N GG+
Sbjct: 98 AKGGSRDLEVARKVFDTMERDVVSWNSMIALYAQNGMSAEAIG-----LYSKMLNVGGGI 152
Query: 61 RCLCV------------GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
+C V G I+ H+H V + + + S +DM+ KCG V+ A
Sbjct: 153 KCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASR 212
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
A F+K+ E++++SW+ MI+ HG G E L F E+
Sbjct: 213 A----------------------FRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKR 250
Query: 169 HGFGLSSMLYATAFSA 184
G + + + + +A
Sbjct: 251 SGLRPNYITFISVLAA 266
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 168/373 (45%), Gaps = 67/373 (17%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM-- 96
R+F + R +FT+ M++G V+ +G++ + V D K+S+
Sbjct: 256 RLFEESPVRDVFTWTAMVSGYVQ-------------NGMLDEARRVFDGMPEKNSVSWNA 302
Query: 97 ----HVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSW 143
+V+C +D A F M ++ W I + F +MP+RD +SW
Sbjct: 303 IIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISW 362
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
+I+ + G+G E L F+E+ G L+ + + S A + LE G +H RVV
Sbjct: 363 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 422
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
+VG+ L+ MY KC G+ A + FE + + +
Sbjct: 423 AGLESGCYVGNALLVMYCKC----------------------GNIDDAYIVFEGIEEKEV 460
Query: 264 ISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTA 310
+SW +I+ +++ G ++ F V +LS CSH+G V KG YF +
Sbjct: 461 VSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYS 520
Query: 311 MAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
M + + ++ CM+DLLG +G L +A+ L+ MP +P WGALLGA H NT+
Sbjct: 521 MTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTE 580
Query: 367 LAELVMRNLLQLD 379
L E + + +++
Sbjct: 581 LGEKAAKMIFEME 593
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 138/364 (37%), Gaps = 83/364 (22%)
Query: 20 LISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHL----- 74
+IS CL + F ++F + R L ++N MI+G C+ N++ A L
Sbjct: 86 MISGCLSNDKFYLA----RQLFEKMPTRDLVSWNVMISG---CVRYRNLRAARLLFDQMP 138
Query: 75 ----------------HGLVKKFYFVSDESIAKSSID------MHVKCGAVDYAESAFLR 112
+G VK+ + DE K+SI +V+ G ++ A F
Sbjct: 139 ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES 198
Query: 113 MLNPSLFCW---------KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
+ L W + ++ +F +MPERD VSWNTMIS ++G E F
Sbjct: 199 KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF 258
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
E S + ++A S Y RV P + + +I Y++C
Sbjct: 259 EE--------SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQC 310
Query: 224 G-------------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
C + S ++T YA+ G +A F+ M +R+ ISW +I
Sbjct: 311 KRMDQARELFEAMPCQNVSS----WNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAII 366
Query: 271 SAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGK--HYFTAMAKFT 315
+ ++Q+G E+ F F S LS C+ + GK H A
Sbjct: 367 AGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE 426
Query: 316 YTCY 319
CY
Sbjct: 427 SGCY 430
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 117/305 (38%), Gaps = 70/305 (22%)
Query: 83 FVSDESIAKSSIDM--HVKCGAVDYAESAFLRMLNPSLFCW-----------KFGIIRLL 129
+D I K +I + H++ G D A F M S W KF + R L
Sbjct: 43 LATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQL 102
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
F+KMP RDLVSWN MIS R+ F ++ +++A S Y
Sbjct: 103 --FEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDV--------VSWNAMLSGY 152
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE----- 244
+ P + +G++ Y++ G I+ + L A+
Sbjct: 153 AQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNG------RIEDARRLFESKADWELIS 206
Query: 245 -----GGSTQKADLA-----FELMSRRNMISWMVLISAFSQAG-VLEKPRFFFFFVSLLS 293
GG ++ L F+ M R+ +SW +IS ++Q G +LE R F
Sbjct: 207 WNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF-------- 258
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
PV FT+T MV +G+L EA+++ D MP K + V W
Sbjct: 259 ---EESPVRD---------VFTWT----AMVSGYVQNGMLDEARRVFDGMPEKNS-VSWN 301
Query: 354 ALLGA 358
A++
Sbjct: 302 AIIAG 306
>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
Length = 855
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 164/364 (45%), Gaps = 54/364 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F T+I+G C ++ + LH L K ++ S I ++ KCG + AE
Sbjct: 362 FALATLISG---CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 418
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M + W II+ F M R+ ++WN M+ +HG + L
Sbjct: 419 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGL 478
Query: 161 CTFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ + + + Y T F A + + G + V L+V V + I M
Sbjct: 479 KMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITM 538
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KC G +A F+L++ ++++SW +I+ +SQ G+
Sbjct: 539 YSKC----------------------GRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMG 576
Query: 280 E--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFV 321
+ KP + + V++LSGCSHSG V +GK YF M + +F
Sbjct: 577 KQAAKTFDDMLSKGAKPDYISY-VAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 635
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
CMVDLLG +G L EAK LID+MP KPT +WGALL AC H N +LAEL +++ +LD
Sbjct: 636 CMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP 695
Query: 382 VFGS 385
GS
Sbjct: 696 DSGS 699
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 187/469 (39%), Gaps = 131/469 (27%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ------------LIDDDYRVFCDIGPRY 48
+++CGS +L AR +H +L++ L S++FLQ L D + DI
Sbjct: 27 LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86
Query: 49 LFTYNTMINGGVR--------------------------------------CLCVGNIKM 70
+ T+N M+NG + C +G ++
Sbjct: 87 VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCREL 146
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK-------- 122
A L GL KF F D + + +DM V+CG VD+A F ++ P++FC
Sbjct: 147 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 206
Query: 123 -FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+GI + F+ M ERD+VSWN MI+ L++ G E L +E+ G L S Y ++
Sbjct: 207 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 266
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A A ++ L WG LH++V+ P +D +V S LI++Y KC
Sbjct: 267 LTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKC------------------ 308
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFF 288
GS ++A F + RN +SW VLI Q K F F
Sbjct: 309 ----GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 364
Query: 289 VSLLSGC-----------------------------------SHSGPVTKGKHYFTAMAK 313
+L+SGC + G + + F++M++
Sbjct: 365 ATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSE 424
Query: 314 FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ M+ G + +A++ D M ++ + W A+LGA H
Sbjct: 425 RDIVSW-TSMITAYSQIGNIIKAREFFDGMATR-NAITWNAMLGAYIQH 471
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/369 (22%), Positives = 135/369 (36%), Gaps = 76/369 (20%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY + + R +G K LH V + D +A + I+++ KCG+ A+
Sbjct: 262 TYTSSLTACARLFSLGWGK---QLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR-- 316
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+F + +R+ VSW +I +E +EL+N
Sbjct: 317 --------------------VFNSLQDRNSVSWTVLIG----GSLQYECFSKSVELFNQM 352
Query: 171 ----FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-- 224
+ AT S + DL G LHS + + + V + LI +Y KCG
Sbjct: 353 RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDL 412
Query: 225 -------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+ E I +++T Y++ G+ KA F+ M+ RN I+W ++ A+ Q G
Sbjct: 413 QNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHG 472
Query: 278 VLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYF-----------TAMA 312
E + +V+L GC+ G G ++A
Sbjct: 473 AEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVA 532
Query: 313 KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
T Y C G + EA+KL D + K V W A++ H K A
Sbjct: 533 NAAITMYSKC--------GRISEAQKLFDLLNGKDV-VSWNAMITGYSQHGMGKQAAKTF 583
Query: 373 RNLLQLDVK 381
++L K
Sbjct: 584 DDMLSKGAK 592
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 46/252 (18%)
Query: 43 DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
D+ P ++ TY T+ G C +G K+ + G K + + S+A ++I M+ KCG
Sbjct: 489 DVTPDWV-TYVTLFRG---CADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGR 544
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+ A+ +F + +D+VSWN MI+ ++HG G + T
Sbjct: 545 ISEAQK----------------------LFDLLNGKDVVSWNAMITGYSQHGMGKQAAKT 582
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGP---HLHSRVVHMEPSLDVFVGSGLIDM 219
F ++ + G + Y S + ++ G + +RV + P L+ F S ++D+
Sbjct: 583 FDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHF--SCMVDL 640
Query: 220 YLKCG----------CNGIESSIQIGKALVTMYAEGGSTQKADLA----FELMSRRNMIS 265
+ G ++ + ++ AL++ G+ + A+LA FEL S + S
Sbjct: 641 LGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDS-PDSGS 699
Query: 266 WMVLISAFSQAG 277
+M+L +S AG
Sbjct: 700 YMLLAKIYSDAG 711
>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
Length = 865
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 164/364 (45%), Gaps = 54/364 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F T+I+G C ++ + LH L K ++ S I ++ KCG + AE
Sbjct: 372 FALATLISG---CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 428
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M + W II+ F M R+ ++WN M+ +HG + L
Sbjct: 429 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGL 488
Query: 161 CTFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ + + + Y T F A + + G + V L+V V + I M
Sbjct: 489 KMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITM 548
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KC G +A F+L++ ++++SW +I+ +SQ G+
Sbjct: 549 YSKC----------------------GRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMG 586
Query: 280 E--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFV 321
+ KP + + V++LSGCSHSG V +GK YF M + +F
Sbjct: 587 KQAAKTFDDMLSKGAKPDYISY-VAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 645
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
CMVDLLG +G L EAK LID+MP KPT +WGALL AC H N +LAEL +++ +LD
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP 705
Query: 382 VFGS 385
GS
Sbjct: 706 DSGS 709
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 150/358 (41%), Gaps = 81/358 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G ++A L GL KF F D + + +DM V+CG VD+A F ++ P++FC
Sbjct: 148 CGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCR 207
Query: 122 K---------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+GI + F+ M ERD+VSWN MI+ L++ G E L +E+ G
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 267
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
L S Y ++ +A A ++ L WG LH++V+ P +D +V S LI++Y KC
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKC--------- 318
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------ 285
GS ++A F + RN +SW VLI Q K F
Sbjct: 319 -------------GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAE 365
Query: 286 ------FFFVSLLSGC-----------------------------------SHSGPVTKG 304
F +L+SGC + G +
Sbjct: 366 LMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNA 425
Query: 305 KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ F++M++ + M+ G + +A++ D M ++ + W A+LGA H
Sbjct: 426 EFVFSSMSERDIVSW-TSMITAYSQIGNIIKAREFFDGMATR-NAITWNAMLGAYIQH 481
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/369 (22%), Positives = 135/369 (36%), Gaps = 76/369 (20%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY + + R +G K LH V + D +A + I+++ KCG+ A+
Sbjct: 272 TYTSSLTACARLFSLGWGK---QLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR-- 326
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+F + +R+ VSW +I +E +EL+N
Sbjct: 327 --------------------VFNSLQDRNSVSWTVLIG----GSLQYECFSKSVELFNQM 362
Query: 171 ----FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-- 224
+ AT S + DL G LHS + + + V + LI +Y KCG
Sbjct: 363 RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDL 422
Query: 225 -------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+ E I +++T Y++ G+ KA F+ M+ RN I+W ++ A+ Q G
Sbjct: 423 QNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHG 482
Query: 278 VLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYF-----------TAMA 312
E + +V+L GC+ G G ++A
Sbjct: 483 AEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVA 542
Query: 313 KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
T Y C G + EA+KL D + K V W A++ H K A
Sbjct: 543 NAAITMYSKC--------GRISEAQKLFDLLNGKDV-VSWNAMITGYSQHGMGKQAAKTF 593
Query: 373 RNLLQLDVK 381
++L K
Sbjct: 594 DDMLSKGAK 602
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 83/386 (21%), Positives = 161/386 (41%), Gaps = 79/386 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+++CGS +L AR +H +L++ L S++FLQ NT+++ +
Sbjct: 11 LRSCGSRGALAGARALHGRLVTVGLASAVFLQ--------------------NTLLHAYL 50
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM--HVKCGAVDYAESAFLRMLNPSL 118
C + + + L + + ++ +I M + K G++ AE
Sbjct: 51 SCGALSDARRLLRAD--------IKEPNVITHNIMMNGYAKQGSLSDAEE---------- 92
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSML 177
+F +MP RD+ SWNT++S + + L TF+ + G L ++
Sbjct: 93 ------------LFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFT 140
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI--QIG 235
+ + ++ E P L + D V + L+DM+++CG S + QI
Sbjct: 141 FCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE 200
Query: 236 K-------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG--------VLE 280
+ +++ YA+ A FE M+ R+++SW ++I+A SQ+G V+E
Sbjct: 201 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 260
Query: 281 KPRFFF-----FFVSLLSGCSHSGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGL 332
R + S L+ C+ + GK + + +V +++L G
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGA 358
EAK++ + + + + V W L+G
Sbjct: 321 FKEAKRVFNSLQDRNS-VSWTVLIGG 345
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 46/252 (18%)
Query: 43 DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
D+ P ++ TY T+ G C +G K+ + G K + + S+A ++I M+ KCG
Sbjct: 499 DVTPDWV-TYVTLFRG---CADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGR 554
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+ A+ +F + +D+VSWN MI+ ++HG G + T
Sbjct: 555 ISEAQK----------------------LFDLLNGKDVVSWNAMITGYSQHGMGKQAAKT 592
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGP---HLHSRVVHMEPSLDVFVGSGLIDM 219
F ++ + G + Y S + ++ G + +RV + P L+ F S ++D+
Sbjct: 593 FDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHF--SCMVDL 650
Query: 220 YLKCG----------CNGIESSIQIGKALVTMYAEGGSTQKADLA----FELMSRRNMIS 265
+ G ++ + ++ AL++ G+ + A+LA FEL S + S
Sbjct: 651 LGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDS-PDSGS 709
Query: 266 WMVLISAFSQAG 277
+M+L +S AG
Sbjct: 710 YMLLAKIYSDAG 721
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 185/445 (41%), Gaps = 104/445 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLI-----STCLISSIFLQL------IDDDYRVFCDIGPRYL 49
+ ACGSL +L ++IHAQ++ S +S+ ++ + D VF + R +
Sbjct: 253 LSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDV 312
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
+NTMI G V C G + +H
Sbjct: 313 IAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHAR 372
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K VSD + I+M+ K G++ A +F +MP+
Sbjct: 373 AVKDGLVSDVRFGNALINMYSKAGSMKDARQ----------------------VFDRMPK 410
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VSW ++ G E+ TF ++ G + + Y A ++ L+WG +
Sbjct: 411 RDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEI 470
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ VV D+ V + L+ MY KCG +E +I++ E
Sbjct: 471 HAEVVKAGIFADLAVANALMSMYFKCG--SVEDAIRVS--------------------EG 508
Query: 258 MSRRNMISWMVLISAFSQAGV-LEKPRFFFF------------FVSLLSGCSHSGPVTKG 304
MS R++++W LI +Q G LE + F FV+++S C V +G
Sbjct: 509 MSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEG 568
Query: 305 KHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+ F +M K ++ CMVD+L +G LGEA+ +I MP KP+ +WGALL AC
Sbjct: 569 RRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACR 628
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
+H N ++ E L+L+ + G+
Sbjct: 629 AHGNVEIGEQAAEQCLKLEPQNAGT 653
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 166/395 (42%), Gaps = 62/395 (15%)
Query: 1 MKACGSLKSLPIARKIHAQL-----------ISTCLISSIFLQLIDDDYRVFCDIGPRYL 49
+++C K L + +++H + I+T L + +++ R+F + +
Sbjct: 51 LQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSV 110
Query: 50 FTYNTMING-GVRCLCVG--NIKMALHLHGLV-KKFYFVSDESIAKSSI------DMHVK 99
++N MI+G R L N+ + GL KF FVS S S ++HV+
Sbjct: 111 VSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVR 170
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFE 158
A +A + S++ K G +R +F M RD VSW T+ G+ E
Sbjct: 171 VMEAGLANNATVGNALISMYA-KCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQE 229
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
+L T+ + G S + Y SA S+ LE G +H+++V E DV V + L
Sbjct: 230 SLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTK 289
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
MY+KC G+ + A FE + R++I+W +I +G
Sbjct: 290 MYIKC----------------------GAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQ 327
Query: 279 LEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVC 322
LE+ F ++++LS C+ G + GK K + +
Sbjct: 328 LEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNA 387
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
++++ +G + +A+++ D MP K V W AL+G
Sbjct: 388 LINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVG 421
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 112/446 (25%), Positives = 193/446 (43%), Gaps = 105/446 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+KAC +++ ++H Q I L S +++ +I +VF R L
Sbjct: 132 LKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDL 191
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++ TMI G V+ C +G++++ LH
Sbjct: 192 VSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRY 251
Query: 78 VKKFYFVS-DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
+ + V+ D + + +DM++KCG ++A +FQ+MP
Sbjct: 252 IIRNSNVNLDVFVGNALVDMYLKCGDANFARK----------------------VFQEMP 289
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+++VSWN+MIS L + G E+L F ++ G + ++ A++ LE G
Sbjct: 290 VKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKW 349
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H+ + + D F+G+ L+DMY KC GS +A F+
Sbjct: 350 VHAYLDRNQIRADGFIGNALVDMYAKC----------------------GSIDQACWVFQ 387
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303
M+R+++ S+ +I + G K F FV +L+ CSH G V +
Sbjct: 388 AMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEE 447
Query: 304 GKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G+ YF M+ ++ CMVDLLG +GL+ EA++ I MP +P + GALLGAC
Sbjct: 448 GRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGAC 507
Query: 360 CSHYNTKLAELVMRNLLQLDVKVFGS 385
H +L E VM+ + +++ + G+
Sbjct: 508 KIHGKVELGESVMKKIEKIEPRKDGA 533
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 41/271 (15%)
Query: 129 LIMFQKMPERDLVSWNTMISIL-TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
L + ++ +L +N +I L T + E L + ++ + G + A A
Sbjct: 78 LSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAE 137
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ G +H + + M + DV+V + L+ MY C+ I S+ ++
Sbjct: 138 SRAVREGEEVHGQAIKMGLASDVYVSNTLMRMY--AVCDVIRSARKV------------- 182
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
F+ +R+++SW +I + + G + FF V +LS
Sbjct: 183 -------FDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSS 235
Query: 295 CSHSGPVTKGK--HYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+ G + G+ H + FV +VD+ G A+K+ EMP K V
Sbjct: 236 CARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK-NVV 294
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
W +++ K + + R + +L VK
Sbjct: 295 SWNSMISGLAQKGQFKESLYMFRKMQRLGVK 325
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 163/366 (44%), Gaps = 50/366 (13%)
Query: 45 GPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD 104
GPR TM++ C +G++ + H V + ++I+ + IDM++KCG +
Sbjct: 327 GPRP--DKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKRE 384
Query: 105 YAESAFLRMLNPSLFCWK---FGIIRLLIM------FQKMPERDLVSWNTMISILTRHGF 155
A F M N ++ W G++R M F +M ERDLVSWNTMI L +
Sbjct: 385 AACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSM 444
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
E + F E+ N G + SA + L+ + + + + +D+ +G+
Sbjct: 445 FEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTA 504
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
L+DM+ +C G A F+ M +R++ +W I +
Sbjct: 505 LVDMFSRC----------------------GDPSSAMHVFKRMEKRDVSAWTAAIGVMAM 542
Query: 276 AGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTC 318
G E F FV+LL+ CSH G V +G+ F +M K +
Sbjct: 543 EGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIV 602
Query: 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
++ CMVDLLG +GLL EA LI MP +P V+WG+LL AC H N +LA L QL
Sbjct: 603 HYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQL 662
Query: 379 DVKVFG 384
+ G
Sbjct: 663 APERVG 668
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 124/320 (38%), Gaps = 49/320 (15%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+ +HG V K D ++ S I + +CG VD
Sbjct: 149 GVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRK---------------------- 186
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M ER++VSW ++I+ + E + F ++ G + + SA A + D
Sbjct: 187 LFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKD 246
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG--CNGIESSIQIGKALVTMYAEGGST 248
LE G + S + + L + + L+DMY+KCG C + + + MY
Sbjct: 247 LELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYN----- 301
Query: 249 QKADLAFELMSRRNMISW----MVLISAFSQAGVLEKPR-FFFFFVSLLSGCSHSGPVTK 303
+MS W +V++ Q G PR +S ++ C+ G ++
Sbjct: 302 -------TIMSNYVHHEWASDVLVILDEMLQKG----PRPDKVTMLSTIAACAQLGDLSV 350
Query: 304 GKH---YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
GK Y + ++D+ G A K+ + MP+K T V W +L+
Sbjct: 351 GKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNK-TVVTWNSLIAGLV 409
Query: 361 SHYNTKLAELVMRNLLQLDV 380
+ +LA + +L+ D+
Sbjct: 410 RDGDMELAWRIFDEMLERDL 429
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 115/313 (36%), Gaps = 48/313 (15%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+DM++KCG + A +F + ++LV +NT++S H
Sbjct: 273 VDMYMKCGDICAARQ----------------------IFDECANKNLVMYNTIMSNYVHH 310
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
+ + L E+ G + + +A A + DL G H+ V+ +
Sbjct: 311 EWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNIS 370
Query: 214 SGLIDMYLKCG-----CNGIE----SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+ +IDMY+KCG C E ++ +L+ G + A F+ M R+++
Sbjct: 371 NAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLV 430
Query: 265 SWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSGCSHSGPVTKGKHYFTAM 311
SW +I A Q + E+ P V + S C + G + K T +
Sbjct: 431 SWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYI 490
Query: 312 AKFTYTCYF---VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
K +VD+ G A + M + W A +G NT+ A
Sbjct: 491 EKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSA-WTAAIGVMAMEGNTEGA 549
Query: 369 ELVMRNLLQLDVK 381
+ +L+ VK
Sbjct: 550 IELFNEMLEQKVK 562
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/251 (20%), Positives = 99/251 (39%), Gaps = 39/251 (15%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
+N +I G G + + ++++ G + SA + + L G +H V+
Sbjct: 98 YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
M D+FV + LI Y +CG + +G+ L F+ M RN
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECG------KVDLGRKL----------------FDGMLERN 195
Query: 263 MISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKH--- 306
++SW LI+ +S + ++ FF V ++S C+ + GK
Sbjct: 196 VVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCS 255
Query: 307 YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
Y + + T +VD+ G + A+++ DE +K V++ ++ H
Sbjct: 256 YISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANK-NLVMYNTIMSNYVHHEWAS 314
Query: 367 LAELVMRNLLQ 377
+++ +LQ
Sbjct: 315 DVLVILDEMLQ 325
>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
Length = 865
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 168/364 (46%), Gaps = 54/364 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F T+I+G C ++ + LH L K ++ S I ++ KCG + AE
Sbjct: 372 FALATLISG---CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 428
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M + W II+ F M R+ ++WN M+ +HG + L
Sbjct: 429 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGL 488
Query: 161 CTFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ + + + Y T F A + + G + V +GLI
Sbjct: 489 KMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVK----------AGLI-- 536
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
++ + A +TMY++ G +A F+L++ ++++SW +I+ +SQ G+
Sbjct: 537 ----------LNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMG 586
Query: 280 E--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFV 321
+ KP + + V++LSGCSHSG V +GK YF M + +F
Sbjct: 587 KQAAKTFDDMLSKGAKPDYISY-VAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 645
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
CMVDLLG +G L EAK LID+MP KPT +WGALL AC H N +LAEL +++ +LD
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP 705
Query: 382 VFGS 385
GS
Sbjct: 706 DSGS 709
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 150/358 (41%), Gaps = 81/358 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G ++A L GL KF F D + + +DM V+CG VD+A F ++ P++FC
Sbjct: 148 CGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCR 207
Query: 122 K---------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+GI + F+ M ERD+VSWN MI+ L++ G E L +E+ G
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 267
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
L S Y ++ +A A ++ L WG LH++V+ P +D +V S LI++Y KC
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKC--------- 318
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------ 285
GS ++A F + RN +SW VLI Q K F
Sbjct: 319 -------------GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAE 365
Query: 286 ------FFFVSLLSGC-----------------------------------SHSGPVTKG 304
F +L+SGC + G +
Sbjct: 366 LMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNA 425
Query: 305 KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ F++M++ + M+ G + +A++ D M ++ + W A+LGA H
Sbjct: 426 EFVFSSMSERDIVSW-TSMITAYSQIGNIIKAREFFDGMDTR-NAITWNAMLGAYIQH 481
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 83/369 (22%), Positives = 134/369 (36%), Gaps = 76/369 (20%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY + + R +G K LH V + D +A + I+++ KCG+ A+
Sbjct: 272 TYTSSLTACARLFSLGWGK---QLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR-- 326
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+F + +R+ VSW +I +E +EL+N
Sbjct: 327 --------------------VFNSLQDRNSVSWTVLIG----GSLQYECFSKSVELFNQM 362
Query: 171 ----FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-- 224
+ AT S + DL G LHS + + + V + LI +Y KCG
Sbjct: 363 RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDL 422
Query: 225 -------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+ E I +++T Y++ G+ KA F+ M RN I+W ++ A+ Q G
Sbjct: 423 QNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHG 482
Query: 278 VLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYF-----------TAMA 312
E + +V+L GC+ G G ++A
Sbjct: 483 AEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVA 542
Query: 313 KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
T Y C G + EA+KL D + K V W A++ H K A
Sbjct: 543 NAAITMYSKC--------GRISEAQKLFDLLNGKDV-VSWNAMITGYSQHGMGKQAAKTF 593
Query: 373 RNLLQLDVK 381
++L K
Sbjct: 594 DDMLSKGAK 602
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 86/396 (21%), Positives = 157/396 (39%), Gaps = 99/396 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVF-CDIGPRY 48
+++CGS +L AR +H +L++ L S++FLQ + D R+ DI
Sbjct: 11 LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPN 70
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
+ T+N M+NG + K G++ AE
Sbjct: 71 VITHNIMMNG--------------------------------------YAKQGSLSDAEE 92
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+F +MP RD+ SWNT++S + + L TF+ +
Sbjct: 93 ----------------------LFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130
Query: 169 HGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
G L ++ + + ++ E P L + D V + L+DM+++CG
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD 190
Query: 228 IESSI--QIGK-------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG- 277
S + QI + +++ YA+ A FE M+ R+++SW ++I+A SQ+G
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250
Query: 278 -------VLEKPRFFF-----FFVSLLSGCSHSGPVTKGKH-YFTAMAKFTYTCYFV--C 322
V+E R + S L+ C+ + GK + + +V
Sbjct: 251 VREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASA 310
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+++L G EAK++ + + + + V W L+G
Sbjct: 311 LIELYAKCGSFKEAKRVFNSLQDRNS-VSWTVLIGG 345
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 46/252 (18%)
Query: 43 DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
D+ P ++ TY T+ G C +G K+ + G K + + S+A ++I M+ KCG
Sbjct: 499 DVTPDWV-TYVTLFRG---CADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGR 554
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+ A+ +F + +D+VSWN MI+ ++HG G + T
Sbjct: 555 ISEAQK----------------------LFDLLNGKDVVSWNAMITGYSQHGMGKQAAKT 592
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGP---HLHSRVVHMEPSLDVFVGSGLIDM 219
F ++ + G + Y S + ++ G + +RV + P L+ F S ++D+
Sbjct: 593 FDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHF--SCMVDL 650
Query: 220 YLKCG----------CNGIESSIQIGKALVTMYAEGGSTQKADLA----FELMSRRNMIS 265
+ G ++ + ++ AL++ G+ + A+LA FEL S + S
Sbjct: 651 LGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDS-PDSGS 709
Query: 266 WMVLISAFSQAG 277
+M+L +S AG
Sbjct: 710 YMLLAKIYSDAG 721
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 153/337 (45%), Gaps = 61/337 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + +H +F +D +A +DM+ KCG + A S
Sbjct: 150 CSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARS------------- 196
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM ERD+V WN++IS LT H E F ++ +G + YA+
Sbjct: 197 ---------IFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASM 247
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
++ + + + G +H++V+ +V+VGS LIDMY KC
Sbjct: 248 INSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKC------------------ 289
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G+ A L F+ M +N+++W +I ++Q G+ +K F F
Sbjct: 290 ----GNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTF 345
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+++L+GCSHSG V K +F +M ++ C++D LG +G E + LI +MP
Sbjct: 346 IAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMP 405
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
K +IW LL AC H+N +L + +L ++D K
Sbjct: 406 CKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPK 442
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 123/335 (36%), Gaps = 85/335 (25%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK-----FG----------IIR 127
F SD+ + S IDM+ KC +D A F + + ++ W FG ++
Sbjct: 4 FGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLS 63
Query: 128 LL-----------------------------IMFQKMPERDLVSWNTMISILTRHGFGFE 158
L+ MF K+ + +WNT++S + +
Sbjct: 64 LMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQD 123
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
T+ F + + A S+ + + L++G +HS V D+FV SGL+D
Sbjct: 124 TIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVD 183
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
MY KCG GI SI F M+ R+++ W +IS +
Sbjct: 184 MYSKCGQIGIARSI----------------------FNKMTERDVVCWNSIISGLT-IHS 220
Query: 279 LEKPRFFFF--------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV--- 321
L K F FF + S+++ CS + G+ + K Y
Sbjct: 221 LNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGS 280
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
++D+ G + +A+ D M K V W ++
Sbjct: 281 ALIDMYAKCGNMDDARLFFDTMMMK-NIVAWNEMI 314
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 153/337 (45%), Gaps = 61/337 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + +H +F +D +A +DM+ KCG + A S
Sbjct: 134 CSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARS------------- 180
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM ERD+V WN++IS LT H E F ++ +G + YA+
Sbjct: 181 ---------IFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASM 231
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
++ + + + G +H++V+ +V+VGS LIDMY KC
Sbjct: 232 INSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKC------------------ 273
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G+ A L F+ M +N+++W +I ++Q G+ +K F F
Sbjct: 274 ----GNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTF 329
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+++L+GCSHSG V K +F +M ++ C++D LG +G E + LI +MP
Sbjct: 330 IAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMP 389
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
K +IW LL AC H+N +L + +L ++D K
Sbjct: 390 CKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPK 426
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 41/243 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
MF K+ + +WNT++S + +T+ F + + A S+ + +
Sbjct: 80 MFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGI 139
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L++G +HS V D+FV SGL+DMY KCG GI SI
Sbjct: 140 LDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSI------------------ 181
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCS 296
F M+ R+++ W +IS + L K F FF + S+++ CS
Sbjct: 182 ----FNKMTERDVVCWNSIISGLT-IHSLNKEAFDFFKQMRENGIMPTESSYASMINSCS 236
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ G+ + K Y ++D+ G + +A+ D M K V W
Sbjct: 237 RLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMK-NIVAWN 295
Query: 354 ALL 356
++
Sbjct: 296 EMI 298
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 158/361 (43%), Gaps = 52/361 (14%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
R L + T+++ C + ++ + +H VK + + IDM+ CG +D A
Sbjct: 215 RVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTA 274
Query: 107 ESAFLRMLNPSLFCW-----------KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF 155
F M + + W + G+ R F KMPERD VSW MI +
Sbjct: 275 LGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNY--FDKMPERDFVSWTAMIDGYLQVNR 332
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
E L F E+ + +A A + LE G + + + E +D FVG+
Sbjct: 333 FKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNA 392
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
LIDMY CG +E +I+I F M R+ ISW +I +
Sbjct: 393 LIDMYFNCG--NVEKAIRI--------------------FNAMPHRDKISWTAVIFGLAI 430
Query: 276 AGVLEKPRFFFFF-------------VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTC 318
G E+ F + +L C+HSG V KGK +F M
Sbjct: 431 NGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVA 490
Query: 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
++ CMVDLLG +G L EA ++I MP KP ++WG+LLGAC H + ++AE+ + +L+L
Sbjct: 491 HYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILEL 550
Query: 379 D 379
+
Sbjct: 551 E 551
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/410 (24%), Positives = 172/410 (41%), Gaps = 65/410 (15%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDY-RVFCDI--GP 46
+K C S+ L ++IH+Q I T LIS+ + +L D +Y R+ D GP
Sbjct: 26 IKTCKSMAQL---KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGP 82
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDES-----IAKSSIDMHVKCG 101
+ F +N MI G R C + A+ ++ + + + DE + + + D VKCG
Sbjct: 83 NH-FVWNNMIKGYSRVGCPNS---AVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCG 138
Query: 102 --------AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+ ++ + F++ L+ + +F + + D+V+WN MIS R
Sbjct: 139 RELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRS 198
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
E++ F E+ SS+ + SA + + DL G +H V ++ +
Sbjct: 199 KQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLE 258
Query: 214 SGLIDMYLKCGC--------NGIESSIQIG-KALVTMYAEGGSTQKADLAFELMSRRNMI 264
+ LIDMY CG + ++S I A+VT + G A F+ M R+ +
Sbjct: 259 NALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFV 318
Query: 265 SWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVTKG---KHY 307
SW +I + Q + KP F VS+L+ C+H G + G K Y
Sbjct: 319 SWTAMIDGYLQVNRFKEVLSLFREMQAANIKPD-EFTMVSILTACAHLGALELGEWIKAY 377
Query: 308 FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP----TCVIWG 353
+ ++D+ G + +A ++ + MP + T VI+G
Sbjct: 378 IDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG 427
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 39/243 (16%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F MP + WN MI +R G + + E+ G Y
Sbjct: 74 MVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDT 133
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
++ G LH +V + G S++ + AL+ +Y+ G
Sbjct: 134 AVKCGRELHDHIVKL----------------------GFSSNVFVQNALIHLYSLSGEVS 171
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
A F+ S+ ++++W V+IS ++++ ++ F VS+LS CS
Sbjct: 172 VARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ GK + V ++D+ G + A + D M S+ + W
Sbjct: 232 KLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSR-DVISWT 290
Query: 354 ALL 356
A++
Sbjct: 291 AIV 293
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 153/337 (45%), Gaps = 61/337 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + +H +F +D +A +DM+ KCG + A S
Sbjct: 427 CSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARS------------- 473
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM ERD+V WN++IS LT H E F ++ +G + YA+
Sbjct: 474 ---------IFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASM 524
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
++ + + + G +H++V+ +V+VGS LIDMY KC
Sbjct: 525 INSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKC------------------ 566
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G+ A L F+ M +N+++W +I ++Q G+ +K F F
Sbjct: 567 ----GNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTF 622
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+++L+GCSHSG V K +F +M ++ C++D LG +G E + LI +MP
Sbjct: 623 IAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMP 682
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
K +IW LL AC H+N +L + +L ++D K
Sbjct: 683 CKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPK 719
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 130/349 (37%), Gaps = 85/349 (24%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK-----F 123
++ +H LV + F SD+ + S IDM+ KC +D A F + + ++ W F
Sbjct: 267 RLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGF 326
Query: 124 G----------IIRLL-----------------------------IMFQKMPERDLVSWN 144
G ++ L+ MF K+ + +WN
Sbjct: 327 GQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWN 386
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
T++S + +T+ F + + A S+ + + L++G +HS V
Sbjct: 387 TLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRF 446
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
D+FV SGL+DMY KCG GI SI F M+ R+++
Sbjct: 447 LLHNDMFVASGLVDMYSKCGQIGIARSI----------------------FNKMTERDVV 484
Query: 265 SWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTKGKHYFTA 310
W +IS + L K F FF + S+++ CS + G+
Sbjct: 485 CWNSIISGLTIHS-LNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQ 543
Query: 311 MAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ K Y ++D+ G + +A+ D M K V W ++
Sbjct: 544 VMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMK-NIVAWNEMI 591
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 32/211 (15%)
Query: 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF---------CWKFGIIRLLIMFQKMP 136
D +A ++++ + G +A AF + +P+ + C + + MP
Sbjct: 42 DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101
Query: 137 ERDLVSWNTMISILTRH-GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
R+ VSWNT+IS L R G G E + + + G + A+ SA + L G
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR 161
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
H V + + FV + L+ MY KCG +G A+ Y
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTKCG--------SVGDAVRLFYG------------ 201
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
M+R N +S+ ++ +Q G ++ F
Sbjct: 202 --MARPNEVSFTAMMGGLAQTGSIDDALRLF 230
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 118/316 (37%), Gaps = 74/316 (23%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
HG+ K +++ + + + M+ KCG+V A F M P
Sbjct: 164 HGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARP------------------ 205
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF-----GLSSMLYATAFSARASVY 189
+ VS+ M+ L + G + L F + G +SS+L A A A A+ Y
Sbjct: 206 ----NEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACA-QACATDY 260
Query: 190 DL----EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ G +H+ VV D VG+ LIDMY KC +++ +A+
Sbjct: 261 SVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKC--------VEMDEAVKV----- 307
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK 305
FE + ++SW +LI+ F Q G K V +LS +G
Sbjct: 308 ---------FESLPSVTIVSWNILITGFGQEGSCAKA------VEVLSLMQEAGFEPN-- 350
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
+ TY+ + + A+ + D++ S+P+ W LL C
Sbjct: 351 -------EVTYSNLLASCIKARDVH----SARAMFDKI-SRPSVTTWNTLLSGYCQEEQH 398
Query: 366 KLAELVMRNLLQLDVK 381
+ + R + +V+
Sbjct: 399 QDTIELFRRMQHQNVQ 414
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 107/440 (24%), Positives = 186/440 (42%), Gaps = 106/440 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL----------------------QLIDDDY 38
++ C S+ +L + +IH Q+I T ++++ L +DD
Sbjct: 422 LRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDV 481
Query: 39 RVFCDIGPRY---------LFTYNTMINGGVR------------CLCVGNIKMALHLHGL 77
+ + Y L + M+N G++ C + + +H
Sbjct: 482 VSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQ 541
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ D SI + + ++ +CG + + A+L F+K+
Sbjct: 542 SYVSGYSEDLSIGNALVSLYARCGRI---KEAYLE-------------------FEKIDA 579
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D +SWN +IS + G+ + L F ++ S + +A SA A++ +++ G +
Sbjct: 580 KDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQI 639
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ G +S I++ AL+T YA+ GS + A F
Sbjct: 640 HAMIIK----------------------RGFDSDIEVSNALITFYAKCGSIEDARREFCE 677
Query: 258 MSRRNMISWMVLISAFSQAG--------------VLEKPRFFFFFVSLLSGCSHSGPVTK 303
M +N +SW +I+ +SQ G V E P F V +LS CSH G VTK
Sbjct: 678 MPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTF-VGVLSACSHVGLVTK 736
Query: 304 GKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G YF +M+K ++ C+VDL+ +G L A+K I+EMP +P IW LL AC
Sbjct: 737 GLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSAC 796
Query: 360 CSHYNTKLAELVMRNLLQLD 379
H N ++ E ++LL+L+
Sbjct: 797 TVHKNVEVGEFAAQHLLELE 816
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 142/352 (40%), Gaps = 68/352 (19%)
Query: 31 LQLIDDDYRVFCDIGPRYL----FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD 86
L + + +R+F + + L FTY +++ C VG + + +H V K F +
Sbjct: 393 LDNLSESFRIFRQMQIKGLIPNQFTYPSILR---TCTSVGALDLGEQIHTQVIKTGFQFN 449
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTM 146
+ IDM+ K G +D A ++ + + E D+VSW +
Sbjct: 450 VYVCSVLIDMYAKHGKLDTAH----------------------VILRTLTEDDVVSWTAL 487
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
IS +H E L F E+ N G ++ +++A SA A + L G +H++
Sbjct: 488 ISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGY 547
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
S D+ +G+ L+ +Y +C G ++A L FE + ++ ISW
Sbjct: 548 SEDLSIGNALVSLYARC----------------------GRIKEAYLEFEKIDAKDSISW 585
Query: 267 MVLISAFSQAGVLEK-------------PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK 313
LIS F+Q+G E FF F S +S ++ + +GK + K
Sbjct: 586 NGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIK 645
Query: 314 FTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ ++ G + +A++ EMP K V W A++ H
Sbjct: 646 RGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKND-VSWNAMITGYSQH 696
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 41/249 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F KM +D VS+N++IS L + GF L F ++ + A+ SA AS
Sbjct: 270 VFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGA 329
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G LHS V+ S D+ V L+D+Y+ C S I+ +
Sbjct: 330 LCKGEQLHSYVIKAGISSDMIVEGALLDLYVNC------SDIKTAHEM------------ 371
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------------FFFVSLLSGCSH 297
F N++ W V++ AF + L E R F F + S+L C+
Sbjct: 372 ----FLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTS 427
Query: 298 SGPVTKGKHYFTAMAK--FTYTCYFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + G+ T + K F + Y VC ++D+ G L A ++ + ++ V W
Sbjct: 428 VGALDLGEQIHTQVIKTGFQFNVY-VCSVLIDMYAKHGKLDTAHVILRTL-TEDDVVSWT 485
Query: 354 ALLGACCSH 362
AL+ H
Sbjct: 486 ALISGYAQH 494
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 125/352 (35%), Gaps = 95/352 (26%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
CL G++ LHG + K F ++ + +D++ G +D
Sbjct: 20 CLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLD----------------- 62
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
G++++ F+ MP R + SW+ +IS L F + + + +A+
Sbjct: 63 --GVVKV---FEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASV 117
Query: 182 FSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A + + +H+R++ C+G+ S I L+
Sbjct: 118 LRACSGHRIGIRYAEQIHARII----------------------CHGLLCSPIISNPLIG 155
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
+YA+ G A F+ + ++ +SW+ +IS FSQ G E+ F
Sbjct: 156 LYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYV 215
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKF-----TYTCY----------------------- 319
F S+LSGC+ G+ + K+ TY C
Sbjct: 216 FSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQ 275
Query: 320 ------FVCMVDLLGLSGLLGEAKKLIDEMPS---KPTCVIWGALLGACCSH 362
F ++ L G A +L +M KP CV +LL AC S+
Sbjct: 276 SKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASN 327
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 119/454 (26%), Positives = 192/454 (42%), Gaps = 96/454 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+ AC L L I +IH + + +++ +++ R F D+ R +
Sbjct: 158 LSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNI 217
Query: 50 FTYNT--------------------MINGGVR------------CLCVGNIKMALHLHGL 77
++N+ M+N G+ C + I+ L +H
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHAR 277
Query: 78 VKKF-YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP-----------SLFCWKFGI 125
V K + +D + + +DM+ KC V+ A F RM P S + +
Sbjct: 278 VMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRM--PLRDVVSETSMVSGYAKASSV 335
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+MF M ER++VSWN +I+ T++G E + F+ L + + +A
Sbjct: 336 KAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNAC 395
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---CNGIESSIQIGKALVTMY 242
A++ DL+ G H+ + LK G +G +S I +G +L+ MY
Sbjct: 396 ANLADLKLGRQAHTHI-------------------LKHGFWFKSGEDSDIFVGNSLIDMY 436
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLEKPRFFFF---------FV 289
+ G + L FE M R+ +SW +I ++Q G LE R +
Sbjct: 437 MKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMI 496
Query: 290 SLLSGCSHSGPVTKGKHYFTAM----AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+LS CSH+G V +G+ YF +M ++ CMVDLLG +G L EA LI MP
Sbjct: 497 GVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPM 556
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+P V+WG+LL AC H N L + V LL++D
Sbjct: 557 EPDAVVWGSLLAACKVHGNITLGKYVAERLLEID 590
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 145/345 (42%), Gaps = 49/345 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ ++ A +H + K F S+ I +D++ KCG ++ A F M + F W
Sbjct: 29 CVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSW 88
Query: 122 --------KFGII-RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
KFG + L +F+ MPERD SWN M+S + E L +++ + F
Sbjct: 89 NAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFV 148
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
L+ + +A SA A + DL G +H + SLDV++GS L+DMY KC
Sbjct: 149 LNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRV------- 201
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----- 287
A AF+ M RN++SW LI+ + Q G K F
Sbjct: 202 ---------------VASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNC 246
Query: 288 --------FVSLLSGCSHSGPVTKG-KHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGE 335
S+ S C+ + +G + + M Y V +VD+ + E
Sbjct: 247 GIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNE 306
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
A+ + D MP + V +++ + K A L+ N+++ +V
Sbjct: 307 ARLVFDRMPLRDV-VSETSMVSGYAKASSVKAARLMFSNMMERNV 350
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 194/458 (42%), Gaps = 130/458 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYL 49
+K+C SL L ++IH Q S IF+ LID D ++F +I R +
Sbjct: 93 IKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNV 152
Query: 50 FTYNTMINGGVRC---------------------------------------------LC 64
++ +MI+G V+ +C
Sbjct: 153 VSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVC 212
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
V ++ +H GL K F ++ + +D + KCG + +
Sbjct: 213 VKSVTECVH--GLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRK---------------- 254
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG------FGLSSMLY 178
+F M E D+ SWN++I++ ++G E F ++ G LS++L
Sbjct: 255 ------VFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLL 308
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
A A S L+ G +H +VV ME ++ VG+ ++DMY KC
Sbjct: 309 ACAHSGA-----LQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKC--------------- 348
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----------- 287
G + A AF+ + R+N+ SW V+++ + G ++ F+
Sbjct: 349 -------GRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNY 401
Query: 288 --FVSLLSGCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLID 341
FVS+L+ CSH+G + +G H+F M +F ++ CMVDLLG +G L EA LI
Sbjct: 402 ITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQ 461
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EM KP ++WG+LLGAC H N +L E+ R L +LD
Sbjct: 462 EMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLD 499
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 131 MFQKMPERDLV-SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
MF K ++ V SWN++I+ R G + L F + + + + +S+Y
Sbjct: 41 MFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLY 100
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
DL G +H + D+FV S LIDMY KC G
Sbjct: 101 DLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKC----------------------GYLN 138
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
A F+ + RN++SW +IS + Q + F F
Sbjct: 139 DARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLF 175
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 130/347 (37%), Gaps = 78/347 (22%)
Query: 63 LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
LC G +H V F + SD +A + IDM+ KCG ++ A
Sbjct: 102 LCAGK---QIHQQAFV--FGYGSDIFVASALIDMYSKCGYLNDARK-------------- 142
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL-----------CTFIELWNHGF 171
+F ++PER++VSW +MIS ++ E + + E+ G
Sbjct: 143 --------LFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGV 194
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
G+ S+L SA A V +H V G E
Sbjct: 195 GVDSVLLGCVISACARVCVKSVTECVHGLAVK----------------------KGFEGC 232
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-----------LE 280
+ +G L+ YA+ G + F+ M ++ SW LI+ ++Q G+ ++
Sbjct: 233 LAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVK 292
Query: 281 KPRFFFFFVSL---LSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLG 334
+ + V+L L C+HSG + GK + K V +VD+ G +
Sbjct: 293 RGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVE 352
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
A+K D + K W ++ H + K A V +++ +K
Sbjct: 353 MARKAFDRLKRK-NVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIK 398
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 156/336 (46%), Gaps = 63/336 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + +HG V + + + + +DM+ KCG +D + FL
Sbjct: 454 CASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFL---------- 503
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
KM ++D V+WN+MIS +++G E L F ++ G +++ + A
Sbjct: 504 ------------KMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAA 551
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA AS+ + +G +H + D+F S LIDMY KCG +E ++++
Sbjct: 552 LSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCG--NLELALRV------- 602
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFF 287
FE M +N +SW +ISA+ G+++ KP
Sbjct: 603 -------------FEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPD-HVT 648
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEM 343
F++L+S C+H+G V +G F M K +F CMVDL SG L +A + I +M
Sbjct: 649 FLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADM 708
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P KP IWGALL AC H N +LA++ + L +LD
Sbjct: 709 PFKPDAGIWGALLHACRVHRNVELADIASQELFKLD 744
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 125/309 (40%), Gaps = 53/309 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C ++ LH L K + ++A + + M+ KC +D A W
Sbjct: 252 CATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDA--------------W 297
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ +F+ MP+ DLV+WN MIS ++G E F ++ G S+ +
Sbjct: 298 R--------LFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSL 349
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----GCNGIESS----I 232
A + L+ G +H +V ++DVF+ S L+D+Y KC N +++ +
Sbjct: 350 LPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDV 409
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
IG +++ Y G +++A F + + + V I+ S+L
Sbjct: 410 VIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIA------------------SVL 451
Query: 293 SGCSHSG--PVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
GC+ P+ + H + + CY ++D+ G L + + +M K
Sbjct: 452 PGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDE- 510
Query: 350 VIWGALLGA 358
V W +++ +
Sbjct: 511 VTWNSMISS 519
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 112/279 (40%), Gaps = 72/279 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLIST-----CLISSIFLQL------IDDDYRVFCDIGPRYL 49
+ C S+ +LP+ ++IH ++ C + S + + +D + +F + +
Sbjct: 451 LPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDE 510
Query: 50 FTYNTMI-----NGG-------VRCLCVGNIK--------------------MALHLHGL 77
T+N+MI NG R +C+ IK +HG+
Sbjct: 511 VTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGV 570
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K +D + IDM+ KCG ++ A L +F+ MP+
Sbjct: 571 TIKGPIKADIFAESALIDMYAKCGNLELA----------------------LRVFEFMPD 608
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
++ VSWN++IS HG E++ + G+ + + SA A +E G L
Sbjct: 609 KNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQL 668
Query: 198 H---SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
++ + P ++ F + ++D+Y + G ++ +IQ
Sbjct: 669 FQCMTKKYLIAPRMEHF--ACMVDLYSRSG--KLDKAIQ 703
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 86/228 (37%), Gaps = 48/228 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + +H + +D + + + M+ G + A AF
Sbjct: 151 CAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAF----------- 199
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+PERD V WN M+ + G + F + G + A
Sbjct: 200 -----------DGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACF 248
Query: 182 FSARASVYDLEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
S A+ DL G LHS V +EP +V V + L+ MY KC C ++ + ++
Sbjct: 249 LSVCATDADLLSGAQLHSLAVKCGLEP--EVAVANTLLAMYAKCQC--LDDAWRL----- 299
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
FELM + ++++W +IS Q G+ + F+
Sbjct: 300 ---------------FELMPQDDLVTWNGMISGCVQNGLFVEAFGLFY 332
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 56/259 (21%)
Query: 131 MFQKMPERDLVS---WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F +P S WN +I T G + ++++W+H S + + ++
Sbjct: 92 VFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSC 151
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
G R+VH G+ + + +G ALV MYA+ G
Sbjct: 152 A---ALGAMSLGRLVHRTAR-----------------AIGLANDVYVGSALVKMYADAGL 191
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFF--FVS- 290
A AF+ + R+ + W V++ +AG ++ +P F F+S
Sbjct: 192 LGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSV 251
Query: 291 ------LLSGCS-HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
LLSG HS V G A+A Y C L +A +L + M
Sbjct: 252 CATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQC--------LDDAWRLFELM 303
Query: 344 PSKPTCVIWGALLGACCSH 362
P + V W ++ C +
Sbjct: 304 P-QDDLVTWNGMISGCVQN 321
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/447 (27%), Positives = 189/447 (42%), Gaps = 91/447 (20%)
Query: 2 KACGSLKSLPIARKI-----HAQLISTCLISSIFLQLI------DDDYRVFCDIGPRYLF 50
KAC L + + +I H S +S+ + L+ D ++F R L
Sbjct: 115 KACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLV 174
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
++N+MING VR C + ++ + H +
Sbjct: 175 SWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYI 234
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR-----LLIM-- 131
++ +A + +DM++KCG ++ A F M N ++ W ++ LL M
Sbjct: 235 EENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAW 294
Query: 132 --FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
F +MP++D+V WN MI G E L F E+ + + SA + +
Sbjct: 295 KLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLG 354
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L+ G +H + E SL+V +G+ LIDMY A+ G
Sbjct: 355 ALDVGIWIHHYIEKHELSLNVALGTALIDMY----------------------AKCGKIT 392
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
KA F+ + RN ++W +IS + G +F F+ LLS C
Sbjct: 393 KAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACC 452
Query: 297 HSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H G V +G+ YF+ M+ KF + ++ CMVDLLG +GLL EA++LI MP + V+W
Sbjct: 453 HGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVW 512
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
GAL AC H N + E LLQ+D
Sbjct: 513 GALFFACRIHGNVLMGERAASKLLQMD 539
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 150/334 (44%), Gaps = 42/334 (12%)
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIR 127
+VK F D ++ + +DM+ KCG A F RM + S+ + +
Sbjct: 1019 VVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVED 1078
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
++F +M E+++++WN +I+ ++G E L F+ L + Y +A +
Sbjct: 1079 AQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGN 1138
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
V DL+ G H V+ D G ES + +G +LV MY + GS
Sbjct: 1139 VADLQLGQQAHVHVLKEGFRFDF----------------GPESDVFVGNSLVDMYLKTGS 1182
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294
FE M+ R+ +SW +I +Q G + F + +LS
Sbjct: 1183 IDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSA 1242
Query: 295 CSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C HSG V +G+ YF +M + ++ CM+DLLG +G L E ++LI EM +P V
Sbjct: 1243 CGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAV 1302
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+W +LLG+C H N ++ E L +LD + G
Sbjct: 1303 LWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSG 1336
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 146/327 (44%), Gaps = 55/327 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + +H LV K D I + +DM+ KC ++ E A
Sbjct: 902 CAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKC---EWPEEARR---------- 948
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+ MPER++VSWN++I+ ++G E L F+ + GF + A+
Sbjct: 949 ---------VFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASV 999
Query: 182 FSARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGCNG---------IESS 231
SA A + G +H+RVV + D+ + + L+DMY KCG S
Sbjct: 1000 MSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRS 1059
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF----- 285
+ +L+T YA + + A + F M +N+I+W VLI+A++Q G E+ R F
Sbjct: 1060 VVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKR 1119
Query: 286 -------FFFVSLLSGCSHSGPVTKGK----HYFTAMAKFTY---TCYFV--CMVDLLGL 329
+ + ++L+ C + + G+ H +F + + FV +VD+
Sbjct: 1120 ESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK 1179
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALL 356
+G + + K+ + M ++ V W A++
Sbjct: 1180 TGSIDDGAKVFERMAARDN-VSWNAMI 1205
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 173/401 (43%), Gaps = 61/401 (15%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-LQLIDDDYRVFCDIGPRYLFTYNTMINGG 59
M A SL +L + + ++ST ++S + I D RVF + R L ++N M+ G
Sbjct: 303 MDAAQSLFNLAPMKDM---VMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGY 359
Query: 60 VRCL-CVGNIKMALHLHGLVKKFYFVSDESIAKSSI---------DMH---VKCG--AVD 104
+R + G + + + ++F ++ S+ + ++H +KCG +
Sbjct: 360 IRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSP 419
Query: 105 YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
++A +RM + C L++F+ ERD SWN++IS RH L
Sbjct: 420 ILKNALVRMYSK---CGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALT 476
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
++ + + +++A +A A+++ L+ G +H+ ++ +D + S LIDMY C
Sbjct: 477 KMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMY--CK 533
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF 284
C + SI+I FE R++I W +I + +G E
Sbjct: 534 CRQFDYSIRI--------------------FEARPSRDVILWNSMIFGCAYSGKGEYGLD 573
Query: 285 FF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLG 328
F F+ L C G V G+ YFT M + ++ CM++LLG
Sbjct: 574 LFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLG 633
Query: 329 LSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
G + E + ++ MP +PT +W + C + N KL E
Sbjct: 634 KHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGE 674
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 133/327 (40%), Gaps = 49/327 (14%)
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---GIIRL------LI 130
K FV++ + + + + + G + A F + +P+ F + RL
Sbjct: 788 KSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARA 847
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +P+ D S+N +I+ L +H G + L + F L++ +A+A SA A+ D
Sbjct: 848 LFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKD 907
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H+ V + DV++GS L+DMY KC ++
Sbjct: 908 SRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEW----------------------PEE 945
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A FE M RN++SW LI+ + Q G + + F S++S C+
Sbjct: 946 ARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAG 1005
Query: 298 SGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G+ + K +VD+ G A+ + D M S+ + V
Sbjct: 1006 LAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASR-SVVSET 1064
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDV 380
+L+ N + A++V +++ +V
Sbjct: 1065 SLITGYARSANVEDAQMVFSQMVEKNV 1091
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 126/314 (40%), Gaps = 53/314 (16%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF-----------LRMLNPSLFCWK 122
+H V + + + S +DM+ KCGA+D A+S F +++ C +
Sbjct: 274 IHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGR 333
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
+ + F+ M ER+LVSWN M++ R L F ++ ++ +
Sbjct: 334 IADAKRV--FEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVL 391
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA + D+ G +H+ +KC G SS + ALV MY
Sbjct: 392 SACTGILDIGKGEEVHA-------------------FAIKC---GFFSSPILKNALVRMY 429
Query: 243 AEGGSTQKAD--LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FF 288
++ G + A+ L FE+ S R+ SW LIS + + + E + F
Sbjct: 430 SKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTF 489
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPS 345
S L+ C++ + +G M + Y + ++D+ + ++ + PS
Sbjct: 490 SSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPS 549
Query: 346 KPTCVIWGALLGAC 359
+ ++W +++ C
Sbjct: 550 RDV-ILWNSMIFGC 562
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 125/324 (38%), Gaps = 48/324 (14%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
A LHG + K F S+ + + +D++ C + A AF +L P
Sbjct: 170 ARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEP-------------- 215
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+ +SWN ++ G G + F + + G + A A
Sbjct: 216 --------NAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNA 267
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI---------QIGKALVTM 241
LE G +H+ V+ V V S ++DMY KCG S+ + ++V+
Sbjct: 268 LEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSG 327
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA----GVL-------EKPRFFFFFV- 289
A G A FE M RN++SW +++ + ++ G L ++ R F
Sbjct: 328 LASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITL 387
Query: 290 -SLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLLGEAKKLID-EMP 344
S+LS C+ + KG+ K F+ +V + G L A++L+ EM
Sbjct: 388 GSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMG 447
Query: 345 SKPTCVIWGALLGACCSHYNTKLA 368
S+ W +L+ H ++ A
Sbjct: 448 SERDSYSWNSLISGYERHSMSEAA 471
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 22/157 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP RD SWN +I+ +R G E L F + + G A+ S A D
Sbjct: 107 LFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLD 166
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L LH + + +V +G+ L+D+Y C + A+
Sbjct: 167 LCGARQLHGHIAKRDFQSNVILGTALVDVYGNC----------------FLLAD------ 204
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
A AF+ + N ISW V++ + AG+ + FF
Sbjct: 205 ARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFF 241
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 179/367 (48%), Gaps = 65/367 (17%)
Query: 30 FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESI 89
FL+ I+ R+ ++ P FT+ +++ C + + + +H V K SD +
Sbjct: 120 FLEAIELFVRLHREVLPNQ-FTFASVLQA---CATMEGLNLGNQIHCHVIKIGLHSDVFV 175
Query: 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISI 149
+ + +D++ KCG RM N + +F + P R+ V+WNT+I
Sbjct: 176 SNALMDVYAKCG----------RMENS------------MELFAESPHRNDVTWNTVIVG 213
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ G G + L F+ + + + + Y++A A AS+ LE G +HS V D
Sbjct: 214 HVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKD 273
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
+ V + LIDMY KC GS + A L F+LM++++ +SW +
Sbjct: 274 IVVTNALIDMYAKC----------------------GSIKDARLVFDLMNKQDEVSWNAM 311
Query: 270 ISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF-- 314
IS +S G+ E R F FV +LS C+++G + +G+ YFT+M +
Sbjct: 312 ISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHG 371
Query: 315 TYTC--YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
C ++ CMV LLG G L +A KLIDE+P +P+ ++W ALLGAC H + +L +
Sbjct: 372 IEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISA 431
Query: 373 RNLLQLD 379
+ +L+++
Sbjct: 432 QRVLEME 438
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 40/267 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER+ +S+ T+I E + F+ L + +A+ A A++
Sbjct: 95 LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLP-NQFTFASVLQACATMEG 153
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H V+ + DVFV + L+D+Y KCG +E+S++ ++AE
Sbjct: 154 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCG--RMENSME-------LFAES----- 199
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
RN ++W +I Q G EK F + S L C+
Sbjct: 200 --------PHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACAS 251
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ G + K T+ V ++D+ G + +A+ + D M +K V W A
Sbjct: 252 LAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLM-NKQDEVSWNA 310
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVK 381
++ H + A + + + +VK
Sbjct: 311 MISGYSMHGLGREALRIFDKMQETEVK 337
>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 159/363 (43%), Gaps = 53/363 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F++ T+I + ++ LH K S+ + + +D + K +++ A+ A
Sbjct: 393 FSFGTVIPSST---ALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKA 449
Query: 110 FLRMLNPSLFCWKFGIIR----------LLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
F P++ + +IR L +F+KMPER++VSWN MIS ++ G+ E
Sbjct: 450 FEDTHEPNVVSYT-TLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEA 508
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ F+ + G + + A SA A++ L G H V DVF+G+ L+
Sbjct: 509 VNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSF 568
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KC GS +++ L F + ++N++SW LI ++ G
Sbjct: 569 YAKC----------------------GSMEESLLVFNTLPKKNIVSWNALICGYANHGRG 606
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM----AKFTYTCYFVC 322
+ +FF + LL C+HSG V KG YF + C
Sbjct: 607 MEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHAC 666
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
MVDLL SG EA+K + E+P P W ALLG C H N +L EL R +L LD +
Sbjct: 667 MVDLLSRSGRFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILALDPED 726
Query: 383 FGS 385
S
Sbjct: 727 VSS 729
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 26/257 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++P D+VS I R+ E + F + + + T + ++ D
Sbjct: 348 LFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQD 407
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTM 241
L G LH+ + M +VFVGS ++D Y K + E ++ L+
Sbjct: 408 LNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRG 467
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
Y + A F M RN++SW +IS +SQ G E+ F F
Sbjct: 468 YLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTF 527
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF--TYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPS 345
+S ++ + G+ + + KF + + +V G + E+ + + +P
Sbjct: 528 PCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPK 587
Query: 346 KPTCVIWGALLGACCSH 362
K V W AL+ +H
Sbjct: 588 K-NIVSWNALICGYANH 603
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 187/424 (44%), Gaps = 76/424 (17%)
Query: 7 LKSLPIARKIHAQLI-----STCLISSIFLQL------IDDDYRVFCDIGPRYLFTYNTM 55
L L + ++HA ++ T L+ S + ID VF IG + F + +
Sbjct: 83 LNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGDYFTFPF--V 140
Query: 56 INGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115
+ V L V M +HGL+ + D +A S I ++ KCG ++ A F M
Sbjct: 141 LKSSVELLSVW---MGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTI 197
Query: 116 PSLFCW--------KFGIIRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
+ W K G I L +F++MP R++VSW TMIS ++ G + L F E+
Sbjct: 198 RDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEM 257
Query: 167 WNHGFGLSS--MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
G+ + + A A + LE G +H M
Sbjct: 258 VKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRM-------------------- 297
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFS-------- 274
G+ S+ + AL MYA+ GS A F+ ++R +N+I+W +I+A++
Sbjct: 298 --GLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQA 355
Query: 275 --------QAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFV 321
QAG+ F LLSGCSHSG V G YF M+ TY+ ++
Sbjct: 356 VSTFREMIQAGIQPDD---ITFTGLLSGCSHSGLVDVGLKYFNHMST-TYSINPRVEHYA 411
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
C+ DLLG +G L EA KL+ EMP IWG+LL AC H N ++AE R L L+ +
Sbjct: 412 CVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPE 471
Query: 382 VFGS 385
G+
Sbjct: 472 NTGN 475
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 155/339 (45%), Gaps = 43/339 (12%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---------FCWK 122
+H H +VK D + + +DM+ KCG A F M + S+ +
Sbjct: 274 VHAH-MVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKS 332
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
+ ++F +M E+++++WN +I+ ++G E + F++L + Y
Sbjct: 333 ANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVL 392
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
+A ++ DL+ G H V+ D G ES + +G +LV MY
Sbjct: 393 NACGNIADLQLGQQAHVHVLKEGFRFDF----------------GPESDVFVGNSLVDMY 436
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
+ GS FE M+ R+ +SW +I ++Q G + F +
Sbjct: 437 LKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMI 496
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+LS C HSG V +G+ YF +M + ++ CMVDLLG +G L EA++LI++MP
Sbjct: 497 GVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPM 556
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+P V+W +LLGAC H N +L E L +LD + G
Sbjct: 557 EPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSG 595
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 148/327 (45%), Gaps = 55/327 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + +HGLV + D I + +DM+ KC + A
Sbjct: 161 CAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARR------------- 207
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F MPER++VSWN++I+ ++G E L F+E+ GF + ++
Sbjct: 208 ---------VFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSV 258
Query: 182 FSARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCG------C--NGIES-S 231
SA A + G +H+ +V + D+ + + L+DMY KCG C + + S S
Sbjct: 259 MSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRS 318
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF----- 285
I +++T YA+ + + A + F M +N+I+W VLI+A++Q G E+ R F
Sbjct: 319 IVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKR 378
Query: 286 -------FFFVSLLSGCSHSGPVTKGK----HYFTAMAKFTY---TCYFV--CMVDLLGL 329
+ + ++L+ C + + G+ H +F + + FV +VD+
Sbjct: 379 DSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK 438
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALL 356
+G + + K+ + M ++ V W A++
Sbjct: 439 TGSIDDGAKVFERMAARDN-VSWNAMI 464
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 42/269 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGF--ETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F+ +P+ D S+N +++ L RHG G + L + F L++ +A+A SA A+
Sbjct: 105 LFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAE 164
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
D G +H V + DV + S L+DMY KC
Sbjct: 165 KDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKC----------------------ERP 202
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGC 295
+ A F+ M RN++SW LI+ + Q G + + F S++S C
Sbjct: 203 EDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSAC 262
Query: 296 SHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
+ +G+ M K +VD+ G EA+ + D MPS+ + V
Sbjct: 263 AGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR-SIVS 321
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDV 380
++L N + A++V +++ +V
Sbjct: 322 ETSILTGYAKSANVEDAQVVFSQMVEKNV 350
>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 161/363 (44%), Gaps = 52/363 (14%)
Query: 43 DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
+I P FT+ T+I+ + NI + LH K + + + +D + K +
Sbjct: 94 NIKPNE-FTFATVIHSST---GLKNIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCS 149
Query: 103 VDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+ A +AF + P++ + K I L +FQ+MPER++VSWN M+ ++
Sbjct: 150 FEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQM 209
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E + FIE+ GF + + A ++ A++ L G H+ V + DVFV
Sbjct: 210 GHNEEAVSLFIEMLREGFMPNQSTFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVC 269
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+ L+ Y KC GS + + L F + RN +SW +I F
Sbjct: 270 NSLVSFYAKC----------------------GSMEDSLLVFNELPDRNTVSWNAVICGF 307
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTY 316
+Q G E FF + LL C+H+G V KG YF M +
Sbjct: 308 AQNGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQEEPGILK 367
Query: 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CMVDLL G L EA K + ++P P W ALLG C H N +L++L + +L
Sbjct: 368 PEHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGGCHIHSNAELSDLAAQKIL 427
Query: 377 QLD 379
LD
Sbjct: 428 ALD 430
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 26/251 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPE D++S T+I R E +C F + + +AT + + +
Sbjct: 55 LFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLKN 114
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK-CGCNGIESSIQ-IGK-------ALVTM 241
+ G LH+R + M + VFVGS ++D Y K C ++ + I K L+
Sbjct: 115 IYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHG 174
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
Y + G A F+ M RN++SW ++ FSQ G E+ F F
Sbjct: 175 YLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTF 234
Query: 289 VSLLSGCSHSGPVTKGKHYFT-AMAKFTYTCYFVC--MVDLLGLSGLLGEAKKLIDEMPS 345
++ ++ + GK + A+ + FVC +V G + ++ + +E+P
Sbjct: 235 PCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPD 294
Query: 346 KPTCVIWGALL 356
+ T V W A++
Sbjct: 295 RNT-VSWNAVI 304
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/462 (25%), Positives = 201/462 (43%), Gaps = 102/462 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID-------DDY--RVFCDIGPRYL 49
+ AC L+ L + +IH+ + + +S +++ L+D +Y VF ++ R
Sbjct: 158 LSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSR 217
Query: 50 FTYNTMI-----NGGVR---------------------------CLCVGNIKMALHLHG- 76
++N++I NG V C + IK +H
Sbjct: 218 VSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHAR 277
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF-----------CWKFGI 125
+VK F +D + + +DM+ KC ++ A F M S+ K +
Sbjct: 278 VVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKV 337
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
R MF M +D+++WN +I+ T++G E L F L + + +A
Sbjct: 338 ARY--MFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNAC 395
Query: 186 ASVYDLEWGPHLHSRVV------HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
A++ DL+ G HS V+ DVFVG+ LIDMY+K C +E+ ++
Sbjct: 396 ANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMK--CGSVENGCRV----- 448
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
F+ M ++ +SW +I ++Q G K F
Sbjct: 449 ---------------FQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHV 493
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDE 342
+ +L CSH+G + +G++YF +M ++ CMVDLLG +G L EAK LI+E
Sbjct: 494 TMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEE 553
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
M +P ++WG+LL AC H N +L E V++ LL++D + G
Sbjct: 554 MSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSG 595
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 148/334 (44%), Gaps = 49/334 (14%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG 124
+H + K F S+ I ID++ KCG VD A F RML ++F W K G
Sbjct: 40 RVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSG 99
Query: 125 IIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+ + +F+KMP+ D SWN+MIS +HG E L F ++ HGF ++ + +A S
Sbjct: 100 FLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALS 159
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A + DL+ G +HS V DV++GS L+DMY KC
Sbjct: 160 ACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKC-------------------- 199
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVS 290
G + A F+ M+ R+ +SW LI+ + Q G +++ F S
Sbjct: 200 --GRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLAS 257
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK---FTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSK 346
++S C+ + +G+ + K F ++D+ + EA+ + D MP +
Sbjct: 258 VVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIR 317
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
+ V +++ K+A + N++ DV
Sbjct: 318 -SVVSETSMVSGYAKASKVKVARYMFSNMMVKDV 350
>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Vitis vinifera]
Length = 538
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 160/364 (43%), Gaps = 54/364 (14%)
Query: 43 DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
+I P F++ T+I + ++ LH K S+ + + +D + K +
Sbjct: 106 NIKPNQ-FSFGTVIPSST---ALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTS 161
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIR----------LLIMFQKMPERDLVSWNTMISILTR 152
++ A+ AF P++ + +IR L +F+KMPER++VSWN MIS ++
Sbjct: 162 INEAQKAFEDTHEPNVVSYT-TLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQ 220
Query: 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
G+ E + F+ + G + + A SA A++ L G H V DVF+
Sbjct: 221 MGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFI 280
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
G+ L+ Y KC GS +++ L F + ++N++SW LI
Sbjct: 281 GNSLVSFYAKC----------------------GSMEESLLVFNTLPKKNIVSWNALICG 318
Query: 273 FSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM----AKFT 315
++ G + +FF + LL C+HSG V KG YF
Sbjct: 319 YANHGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLL 378
Query: 316 YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
+ CMVDLL SG EA+K + E+P P W ALLG C H N +L EL R +
Sbjct: 379 TPEHHACMVDLLSRSGRFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKI 438
Query: 376 LQLD 379
L LD
Sbjct: 439 LALD 442
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 26/257 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++P D+VS I R+ E + F + + + T + ++ D
Sbjct: 67 LFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQD 126
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTM 241
L G LH+ + M +VFVGS ++D Y K + E ++ L+
Sbjct: 127 LNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRG 186
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
Y + A F M RN++SW +IS +SQ G E+ F F
Sbjct: 187 YLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTF 246
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF--TYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPS 345
+S ++ + G+ + + KF + + +V G + E+ + + +P
Sbjct: 247 PCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPK 306
Query: 346 KPTCVIWGALLGACCSH 362
K V W AL+ +H
Sbjct: 307 K-NIVSWNALICGYANH 322
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 156/329 (47%), Gaps = 60/329 (18%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
LHGL ++ + S+ ++ + +DM+ +C ++ A+ ++F
Sbjct: 139 QLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQ----------------------LIF 176
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
M ++ VSWN +I+ R G G + C F + + Y++ A AS+ LE
Sbjct: 177 DVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLE 236
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H+ ++ L FVG+ L+DMY A+ GS + A
Sbjct: 237 QGKWVHALMIKWGEKLVAFVGNTLLDMY----------------------AKSGSIEDAK 274
Query: 253 LAFELMSRRNMISWMVLISAFSQAGV--LEKPRFF-----------FFFVSLLSGCSHSG 299
F+ +++R+++SW +++ +SQ G+ + RF F+ +L+ CSH+G
Sbjct: 275 KVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAG 334
Query: 300 PVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ +G+HYF M K+ ++V MVDLLG +G L A + I EMP KPT +WGALL
Sbjct: 335 LLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALL 394
Query: 357 GACCSHYNTKLAELVMRNLLQLDVKVFGS 385
GAC H N +L + +LD G+
Sbjct: 395 GACRMHKNMELGGYAAECIFELDSHYPGT 423
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 137/337 (40%), Gaps = 68/337 (20%)
Query: 57 NGGVRCLCVGNIKMALHL---------HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
N G R +C +K HL H L+ F D + + ++++ KCG + YA
Sbjct: 11 NAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYAR 70
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
+F +M RD+V+W +I+ ++H + L E+
Sbjct: 71 K----------------------LFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEML 108
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
G + A+ A + V S DV G L + L+ G
Sbjct: 109 RIGLKPNQFTLASLLKAASGV-----------------GSTDVLQGRQLHGLCLR---YG 148
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK------ 281
+S++ + A++ MYA ++A L F++M +N +SW LI+ +++ G +K
Sbjct: 149 YDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFS 208
Query: 282 -------PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFV--CMVDLLGLSG 331
F + S+L C+ G + +GK M K+ FV ++D+ SG
Sbjct: 209 NMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSG 268
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ +AKK+ D + +K V W ++L H K+A
Sbjct: 269 SIEDAKKVFDRL-AKRDVVSWNSMLTGYSQHGLGKVA 304
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS-----QAGVLEKPRFF----- 285
L+ +YA+ G A F+ MS R++++W LI+ +S Q +L P
Sbjct: 54 NTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLK 113
Query: 286 ---FFFVSLLSGCSHSG--PVTKGKHYFTAMAKFTY--TCYFVCMV-DLLGLSGLLGEAK 337
F SLL S G V +G+ ++ Y Y C + D+ L EA+
Sbjct: 114 PNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQ 173
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ D M SK V W AL+ A + N+L+ +VK
Sbjct: 174 LIFDVMVSKNE-VSWNALIAGYARKGQGDKAFCLFSNMLRENVK 216
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 171/366 (46%), Gaps = 46/366 (12%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
+R+ C P +T+ ++ C + + +H + KF + D S I+ +
Sbjct: 99 HRMLCCSAPHNAYTFPFLLKA---CSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSY 155
Query: 98 VKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRL-LIMFQKMPERD-LVSWNTMI 147
G +A F R+ P W K G + + L +F+KMPE++ +SW TMI
Sbjct: 156 AVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMI 215
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
S + G E L F E+ N ++ A+A SA + + LE G +HS
Sbjct: 216 SGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTR 275
Query: 208 LDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+D + LIDMY KCG N S+Q+ AL++ YA G ++A F +
Sbjct: 276 IDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKF--L 333
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC 318
+NM GV KP F ++L+ CS++G V +GK F + + Y
Sbjct: 334 EMQNM-------------GV--KPNAITF-TAVLTACSYTGLVEEGKSVFNTIER-DYNL 376
Query: 319 -----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
++ CMVDLLG +GLL EA + I +MP KP VIWG+LL AC H N +L E +
Sbjct: 377 KPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGE 436
Query: 374 NLLQLD 379
L+++D
Sbjct: 437 ILIEMD 442
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/440 (27%), Positives = 187/440 (42%), Gaps = 106/440 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KAC + + KIH+ L+ +F++ DD +VF DI + +
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180
Query: 50 FTYNTMINGGVRC----LCVGNIKMALHL------HGLVKKF----------------YF 83
++ +I G + +G K L + LVK +
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240
Query: 84 VSDES------IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+SD +A S +DM+VKCG ++ A ++F MPE
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERAN----------------------LIFSAMPE 278
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D+VSW+TMI +G + L F ++ + SA A++ L+ G
Sbjct: 279 KDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWA 338
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
S + E + +G+ LIDMY KC GS +A F
Sbjct: 339 SSLMDRNEFLSNPVLGTALIDMYSKC----------------------GSVTQAWEIFTA 376
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTK 303
M R++ + W ++ S G K F F F+ LL GC+H G V +
Sbjct: 377 MKRKDRVVWNAMMVGLSMNG-HAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNE 435
Query: 304 GKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G+ +F M + F+ T ++ CMVDLLG +GLL EA +LI+ MP KP V+WGALLG C
Sbjct: 436 GRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGC 495
Query: 360 CSHYNTKLAELVMRNLLQLD 379
H +T LAE V++ L++L+
Sbjct: 496 KLHKDTHLAEQVLKKLIELE 515
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 41/244 (16%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F ++ E ++ WNTMI L + + + + GF ++ A A
Sbjct: 69 LVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKL 128
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D+ G +HS +V DVFV + L+ +Y+K C+ + ++++
Sbjct: 129 DVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVK--CDNFDDALKV--------------- 171
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAG-----------VLE---KPRFFFFFVSLLSGC 295
F+ + +N++SW +I+ + +G +LE KP F V +L+ C
Sbjct: 172 -----FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPD-SFSLVKVLAAC 225
Query: 296 SHSGPVTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ G T G+ Y + ++D+ G L A + MP K V W
Sbjct: 226 ARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDI-VSW 284
Query: 353 GALL 356
++
Sbjct: 285 STMI 288
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 156/332 (46%), Gaps = 62/332 (18%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
++ L LH L+ K F SD + I + CG +D+A
Sbjct: 98 ARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFA------------------- 138
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSA 184
L +F++MPERDLVSW++MI+ ++GFG+E L F + G ++ + SA
Sbjct: 139 ---LKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSA 195
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ + DLE G + G I NG+E ++ +G ALV M++
Sbjct: 196 ISILGDLELGKWI----------------RGFISR------NGLEFTVSLGTALVDMFSR 233
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFFF------------FFVSL 291
G +++ F+ M RN+++W LI+ + G E R F+ F +
Sbjct: 234 CGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGV 293
Query: 292 LSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
L CSH G V++G H F ++ ++ CMVDLLG +GLL EA K +D MP +P
Sbjct: 294 LVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRP 353
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+IW LLGAC +H +LAE V + +LD
Sbjct: 354 NSIIWRTLLGACVNHNYIELAEKVKEKINELD 385
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 61/340 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + LH + K + + +DM+ KCG +D A
Sbjct: 285 CAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQ------------- 331
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F++MPE+D V WN +I+ +++G E + F ++ G + + A
Sbjct: 332 ---------IFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAA 382
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ L G +HS ++ +VF S LIDMY KCG
Sbjct: 383 LSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCG----------------- 425
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
+ A F++M +N +SW +I+A+ G LE F F
Sbjct: 426 -----NLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTF 480
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+++LS C H+G V KG YF M + ++ C+VDL G +G L EA + I MP
Sbjct: 481 LTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMP 540
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
P +WG LLGAC H N +LAE+ R LL LD + G
Sbjct: 541 FSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSG 580
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 82/386 (21%), Positives = 140/386 (36%), Gaps = 85/386 (22%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRC------------------------------L 63
I+D R+F + + +N M+NG V+C +
Sbjct: 23 IEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSI 82
Query: 64 CVGNI--KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + LHGLV F D +A + + M+ K G + A
Sbjct: 83 CASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDA--------------- 127
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F MP+ ++V+WN MI+ ++GF E F E+ + G S+ +A+
Sbjct: 128 -------LKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----GCNGIESSIQIG- 235
+ L+ G +H ++ +LDVF+ S LID+Y KC C + S +
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240
Query: 236 ---KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
A+++ Y G A F + M V ++ S+L
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLA------------------SVL 282
Query: 293 SGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
C+ + GK + K ++D+ G L A ++ MP K
Sbjct: 283 PACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DA 341
Query: 350 VIWGALLGACCSHYNTKLAELVMRNL 375
V W A++ C + + A + R +
Sbjct: 342 VCWNAIITNCSQNGKPQEAIDLFRQM 367
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 128/330 (38%), Gaps = 57/330 (17%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
++K +HG + + D + + ID++ KC V A
Sbjct: 188 ASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMA------------------- 228
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+F++ D+V +IS +G + L F L +++ A+ A
Sbjct: 229 ---CKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPAC 285
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK--------- 236
A + L G LH+ ++ VGS ++DMY KCG ++ + QI +
Sbjct: 286 AGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCG--RLDLAYQIFRRMPEKDAVC 343
Query: 237 --ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSG 294
A++T ++ G Q+A F M R + V ISA LS
Sbjct: 344 WNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISA------------------ALSA 385
Query: 295 CSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C++ + GK H F F + ++D+ G G L A+ + D M K V
Sbjct: 386 CANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNE-VS 444
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDVK 381
W +++ A SH + +++ + +L+ ++
Sbjct: 445 WNSIIAAYGSHGHLEVSLALFHKMLEDGIQ 474
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 133/266 (50%), Gaps = 38/266 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F + +++VSWN +I+ R G G + F+++ GF + Y++ F+A AS
Sbjct: 262 VIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSG 321
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
LE G +H+ V+ K G I IG L+ MYA+ GS +
Sbjct: 322 SLEQGKWVHAHVI-------------------KSGGQPI---AYIGNTLIDMYAKSGSIK 359
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
A F + +++++SW +IS ++Q G+ + F F+S+L+ CS
Sbjct: 360 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 419
Query: 297 HSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
HSG + +G++YF M K + V +VDLLG +G L EA K I+EMP KPT +WG
Sbjct: 420 HSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWG 479
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLD 379
ALLG+C H N L + +LD
Sbjct: 480 ALLGSCRMHKNMDLGVYAAEQIFELD 505
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 134/327 (40%), Gaps = 64/327 (19%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
Y+ M+N +C + +K +H ++ F D + ++M+ KCG+++ A+
Sbjct: 108 YSKMLN---KCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQD--- 161
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+F KMP +D+VSW +IS ++ G E L F ++ + GF
Sbjct: 162 -------------------LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF 202
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ ++ A + G LH+ + ++V VGS L+D
Sbjct: 203 QPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLD------------- 249
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF----- 285
MYA ++A + F ++ +N++SW LI+ ++ G E R F
Sbjct: 250 ---------MYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLR 300
Query: 286 -------FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGE 335
F + S+ + C+ SG + +GK H + Y ++D+ SG + +
Sbjct: 301 QGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKD 360
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSH 362
AKK+ + K V W +++ H
Sbjct: 361 AKKVFRRL-VKQDIVSWNSIISGYAQH 386
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 87/218 (39%), Gaps = 42/218 (19%)
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
LY+ + + L+ G +H+ + D+ + + +++MY KC
Sbjct: 107 LYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC------------- 153
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
GS ++A F+ M ++M+SW VLIS +SQ+G + F
Sbjct: 154 ---------GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQP 204
Query: 287 --FFVSLLSGCSHSGPVT-KGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLI 340
F +S L S +GP G+ K+ Y ++D+ + EAK +
Sbjct: 205 NEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIF 264
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ + +K V W AL+ H E VMR LQ+
Sbjct: 265 NSLAAK-NVVSWNALIAG---HARKGEGEHVMRLFLQM 298
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 181/406 (44%), Gaps = 79/406 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KA G S R +H +L+ +F + I D + +F ++ +
Sbjct: 133 LKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNV 192
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
T+NTMI G C G+ + A L G + + S ++ + + K G VD A S
Sbjct: 193 VTWNTMITG---CFGCGDTERARRLFGEMPERNVGSWNAV----VGGYSKLGHVDIARS- 244
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F MPERD+VSW +MIS ++G E L F E+
Sbjct: 245 ---------------------LFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLA 283
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G S++ + SA A + L+ G +H+ + + DVF+ + L+DMY KCGC I+
Sbjct: 284 GVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGC--ID 341
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLEKPRFF 285
++ + F M R+N+ SW ++S + G LE +
Sbjct: 342 TAFGV--------------------FNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQM 381
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGL 332
FV++LS CSH G V +G F M K F T ++ CMVD+L GL
Sbjct: 382 ESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGL 441
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ EAK++I MP +P VIWGALL AC H T + E V+ + +L
Sbjct: 442 INEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKL 487
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 161/330 (48%), Gaps = 63/330 (19%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
++ A+ +H L+ K F + + + + IDM+ K G +D A
Sbjct: 57 MQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCA--------------------- 95
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+++F KM ++D+VSW ++++ + +G E + F ++ G + A+ SA A
Sbjct: 96 -IMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAE 154
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ +++G +H+ +V +G+ESS+ + +LVTMYA+ GS
Sbjct: 155 LTVMDFGQQIHATLVK----------------------SGLESSLSVDNSLVTMYAKCGS 192
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAG--------------VLEKPRFFFFFVSLLS 293
A+ AF+ M R++ISW LI ++Q G KP + F + LL
Sbjct: 193 IVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITF-IGLLF 251
Query: 294 GCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSH+G + G+ YF AM K ++ CM+DLLG SG L EAK L+++M P
Sbjct: 252 ACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDA 311
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLD 379
V+W ALL AC H +L E+ +NL +L+
Sbjct: 312 VVWKALLAACRVHKELELGEMAAKNLFELE 341
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 39/234 (16%)
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
D VSWN++I R GF + L F ++ + + + ++ AS+ ++ +H
Sbjct: 5 DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
++ V + LID MYA+ G A + F M
Sbjct: 65 CLIIKTGFEAYKLVNNALID----------------------MYAKQGKLDCAIMVFSKM 102
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK 305
++++SW L++ +S G E+ F S+LS C+ + G+
Sbjct: 103 VDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQ 162
Query: 306 HYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ K +V + G + +A + D MP++ + W AL+
Sbjct: 163 QIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDV-ISWTALI 215
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 175/375 (46%), Gaps = 63/375 (16%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM--- 96
+F ++ R + ++ TMI+G V+ G + +A +K + V E S M
Sbjct: 193 LFDEMPRRNVISWTTMISGYVQN---GQVDVA-------RKLFEVMPEKNEVSWTAMLMG 242
Query: 97 HVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+ + G ++ A F M ++ F + + +F ++ E+D +W+ MI
Sbjct: 243 YTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMI 302
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ R GF E L F + G + + S AS+ L+ G +H+ +V +
Sbjct: 303 KVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFD 362
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
DVFV S LI MY+KC G KA F+ S ++++ W
Sbjct: 363 SDVFVASVLITMYVKC----------------------GDLVKARQIFDRFSPKDIVMWN 400
Query: 268 VLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+I+ ++Q G++E+ F FV +LS CS++G V +G F +M K
Sbjct: 401 SIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESM-KS 459
Query: 315 TY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
Y T ++ CMVDLLG +GL+ +A LI +MP + +IWGALLGAC +H N LAE
Sbjct: 460 KYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAE 519
Query: 370 LVMRNLLQLDVKVFG 384
+ + LLQL+ K G
Sbjct: 520 VAAKKLLQLEPKNAG 534
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 123/312 (39%), Gaps = 37/312 (11%)
Query: 92 SSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVS 142
S I + + G ++ A F M + + W + +F KMPER+ VS
Sbjct: 21 SQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVS 80
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGF-GLSSMLYATAFSARASVYDLEWGPHLHSRV 201
WN +IS ++ E F + ++M+ S + + V
Sbjct: 81 WNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV 140
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA-----LVTMYAEGGSTQKADLAFE 256
V S V +G GLI + G+ + + +++ Y + G +A F+
Sbjct: 141 V----SWTVMLG-GLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFD 195
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHY 307
M RRN+ISW +IS + Q G ++ R F + ++L G + G + +
Sbjct: 196 EMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASEL 255
Query: 308 FTAMA-KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
F AM K C M+ G +G + +A+++ D++ K W A++ Y K
Sbjct: 256 FDAMPVKAVVACN--AMILGFGQNGEVAKARQVFDQIREKDDGT-WSAMIKV----YERK 308
Query: 367 LAELVMRNLLQL 378
E+ NL L
Sbjct: 309 GFEVEALNLFAL 320
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 155/332 (46%), Gaps = 62/332 (18%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
++ L LH L+ K F SD + I + CG +D+A
Sbjct: 98 ARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFA------------------- 138
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSA 184
L F++MPERDLVSW++MI+ ++GFG+E L F + G ++ + SA
Sbjct: 139 ---LKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSA 195
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ + DLE G + G I NG+E ++ +G ALV M++
Sbjct: 196 ISILGDLELGKWI----------------RGFISR------NGLEFTVSLGTALVDMFSR 233
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFFF------------FFVSL 291
G +++ F+ M RN+++W LI+ + G E R F+ F +
Sbjct: 234 CGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGV 293
Query: 292 LSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
L CSH G V++G H F ++ ++ CMVDLLG +GLL EA K +D MP +P
Sbjct: 294 LVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRP 353
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+IW LLGAC +H +LAE V + +LD
Sbjct: 354 NSIIWRTLLGACVNHNYIELAEKVKEKINELD 385
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 126/451 (27%), Positives = 189/451 (41%), Gaps = 99/451 (21%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFLQL------------IDDDYRVFCDIGPRYL 49
K C S+K L +KIHAQLI T L I+ Y VF I L
Sbjct: 4 KNCTSMKDL---QKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNL 60
Query: 50 FTYNTMINGGVRCLCVGN-----IKM-----------------------------ALHLH 75
F +NT+I G + N I M LH
Sbjct: 61 FVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLH 120
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI----- 130
G V K +D+ I + ++M+V CG + A+ F + W II L
Sbjct: 121 GRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEID 180
Query: 131 ----MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F KM R+ VSWN+MIS R G FE + F + G S + +A A
Sbjct: 181 KSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACA 240
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ L G +H +V +L+ V + +IDMY KCG I+ ++Q+
Sbjct: 241 CLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCG--SIDKALQV------------ 286
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLS 293
F+ ++ + W LI + +G E R F F+ +L+
Sbjct: 287 --------FKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLT 338
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
C+H+G V + K YF M++ TY ++ CMVD+LG +GLL EA++LI MP P
Sbjct: 339 ACNHAGMVDRAKDYFLLMSE-TYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPD 397
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+IWG+LL +C + N ++A+ + + +LD
Sbjct: 398 AIIWGSLLSSCREYGNIEMAKQAAKRVNELD 428
>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
Length = 1241
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/440 (27%), Positives = 190/440 (43%), Gaps = 106/440 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+ C + S R +HA++I + S++ +Q +D VF + R +
Sbjct: 757 LSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDV 816
Query: 50 FTYNTMING--------------------GVRC------------LCVGNIKMALHLHGL 77
+ +MI G GV+ L + N+++ +HG
Sbjct: 817 VAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGF 876
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K SD +A S +DM+ K G +AESA + +F MP
Sbjct: 877 AIKRGLESDVFVACSLVDMYSKFG---FAESAEM-------------------VFSSMPN 914
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
++LV+WN+MIS + +G ++ ++ HGF L S+ T A +SV L G L
Sbjct: 915 KNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTL 974
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ + ++ D+ V + LIDMY+KCGC + A L FE
Sbjct: 975 HAYQIRLQIPSDLQVENALIDMYVKCGC----------------------LKYAQLIFEN 1012
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M RRN+++W +I+ + G E+ F F++L++ CSHSG V +G
Sbjct: 1013 MPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEG 1072
Query: 305 KHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
+ F M + Y ++ +VDLLG +G L +A I MP +W LL AC
Sbjct: 1073 LNLFQLM-RIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFAC 1131
Query: 360 CSHYNTKLAELVMRNLLQLD 379
+H N +L ELV NLL+++
Sbjct: 1132 RAHRNMELGELVADNLLKME 1151
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 137/339 (40%), Gaps = 64/339 (18%)
Query: 46 PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105
P FT +++++G C VG+ +H V K S+ +I + + M+ KCG+ +
Sbjct: 747 PVDSFTISSLLSG---CSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTED 803
Query: 106 AESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165
A+S +F M ERD+V+W +MI+ ++ + L F
Sbjct: 804 ADS----------------------VFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRA 841
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
+ G S + + SA + ++E G +H + DVFV L+DMY K G
Sbjct: 842 MEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFG- 900
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK---- 281
+AE A++ F M +N+++W +IS +S G+ E
Sbjct: 901 ----------------FAE-----SAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINL 939
Query: 282 -PR-----FFFFFVSL---LSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGL 329
P+ F+ VS+ L S + KGK + ++D+
Sbjct: 940 LPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVK 999
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
G L A+ + + MP + V W +++ SH N + A
Sbjct: 1000 CGCLKYAQLIFENMPRR-NLVTWNSMIAGYGSHGNCEEA 1037
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 121/320 (37%), Gaps = 48/320 (15%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+HG + + F D + + I M+ C A S F ++ N S
Sbjct: 568 QIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRS--------------- 612
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++V+WN MI +G ++L + N L S + AF+A + L+
Sbjct: 613 ------NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLD 666
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
+G +H V+ M D +V + L+ MY K G S++ K + Q D
Sbjct: 667 FGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSG------SVEDAKKVF--------DQVLD 712
Query: 253 LAFELMSRRNMISWMV-------LISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK 305
EL R MIS + + +++ E P F SLLSGCS G G+
Sbjct: 713 KEVEL--RNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGR 770
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ K + LL + G +A + M + V WG+++ C +
Sbjct: 771 TVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKER-DVVAWGSMIAGFCQN 829
Query: 363 YNTKLAELVMRNLLQLDVKV 382
K A + R + + VK
Sbjct: 830 RRFKDALDLFRAMEKEGVKA 849
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 122/323 (37%), Gaps = 77/323 (23%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +++ C + N+ +H + SD IA S I+M+VKCG + A
Sbjct: 442 FTFPSLLK---TCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSA--- 495
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPER-----DLVSWNTMISILTRHGFGFETLCTFI 164
L +F KM E D+ WN +I ++G E L F
Sbjct: 496 -------------------LQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFC 536
Query: 165 ELWN-----HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ G+ LS +L R S Y G +H ++ D ++ + LI M
Sbjct: 537 RMQELGIRPDGYSLSIVL---GICNRLSWY--MAGRQIHGYIIRNMFEGDPYLETALIGM 591
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y C +E+ GK L +R N+++W V+I F + G+
Sbjct: 592 YSSCS-RPMEAWSLFGK--------------------LENRSNIVAWNVMIGGFVENGMW 630
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT-CYFVC--M 323
EK + F + CSH + G+ + K + +VC +
Sbjct: 631 EKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSL 690
Query: 324 VDLLGLSGLLGEAKKLIDEMPSK 346
+ + SG + +AKK+ D++ K
Sbjct: 691 LTMYAKSGSVEDAKKVFDQVLDK 713
>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
Length = 795
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 158/363 (43%), Gaps = 53/363 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F++ T+I + ++ LH K S+ + + +D + K +++ A+ A
Sbjct: 369 FSFGTVIPSAT---ALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKA 425
Query: 110 FLRMLNPSLFCWKFGIIR----------LLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
F P++ + +IR L +F+ MPER++VSWN MIS ++ G+ E
Sbjct: 426 FEDTHEPNVVSYTT-LIRGYLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEA 484
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ F+ + G + + A SA A++ L G H V DVF+G+ L+
Sbjct: 485 VNLFVVMLREGXLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSF 544
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KC GS +++ L F + ++N++SW LI ++ G
Sbjct: 545 YAKC----------------------GSMEESLLVFNTLPKKNIVSWNALICGYANHGRG 582
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM----AKFTYTCYFVC 322
+ +FF + LL C+HSG V KG YF + C
Sbjct: 583 MEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHAC 642
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
MVDLL SG EA+K + E+P P W ALLG C H N +L EL R +L LD +
Sbjct: 643 MVDLLSRSGRFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILALDPED 702
Query: 383 FGS 385
S
Sbjct: 703 VSS 705
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 26/257 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++P D+VS I R+ E + F + + + T + ++ D
Sbjct: 324 LFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSATALQD 383
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTM 241
L G LH+ + M +VFVGS ++D Y K + E ++ L+
Sbjct: 384 LNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRG 443
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
Y + A F M RN++SW +IS +SQ G E+ F F
Sbjct: 444 YLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGXLPNERTF 503
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF--TYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPS 345
+S ++ + G+ + + KF + + +V G + E+ + + +P
Sbjct: 504 PCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPK 563
Query: 346 KPTCVIWGALLGACCSH 362
K V W AL+ +H
Sbjct: 564 K-NIVSWNALICGYANH 579
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 166/353 (47%), Gaps = 65/353 (18%)
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
+FT T+++ C C G ++ +H +K+ SD ++ + +DM+ KCG++ A S
Sbjct: 352 IFTITTILHA---CACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHS 408
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+F +M +D+VSWNTMI +++ E L F+E+
Sbjct: 409 ----------------------VFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-Q 445
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
+ +S+ A A AS+ LE G +H ++ SLD V + L+DMYLKCG G+
Sbjct: 446 YNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGL 505
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF- 287
A L F+++ ++++SW V+I+ + G + F
Sbjct: 506 ----------------------ARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNE 543
Query: 288 ------------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSG 331
F+S+L CSHSG + +G +F M + ++ C+VDLL +G
Sbjct: 544 MRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAG 603
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
L +A K I MP +P IWGALL C +++ KLAE V ++ +L+ + G
Sbjct: 604 NLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTG 656
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/379 (20%), Positives = 140/379 (36%), Gaps = 92/379 (24%)
Query: 31 LQLIDDDYRVFCDIGPRYLFTYNTMINGGVR----------------------------- 61
++ ++ ++F ++G R + ++N+MI+G V
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257
Query: 62 ---CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL 118
C G + + LHG K F + ++ +DM+ K G ++ A
Sbjct: 258 VAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSA------------ 305
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
+ +F+ M ER +VSW +MI+ R G ++ F E+ G
Sbjct: 306 ----------IQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTI 355
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
T A A LE G +H+ + + D+FV + L+DMY KCG G S+
Sbjct: 356 TTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSV------ 409
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS-------- 290
F M ++++SW +I +S+ + + F +
Sbjct: 410 ----------------FSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSI 453
Query: 291 ----LLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEM 343
+L C+ + +G+ H F+ + +VD+ G LG A+ L D +
Sbjct: 454 TMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMI 513
Query: 344 PSKPTCVIWGALLGACCSH 362
P K V W ++ H
Sbjct: 514 PEK-DLVSWTVMIAGYGMH 531
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 134/340 (39%), Gaps = 66/340 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +I+ +H +++ D + + M+V CG + F ++ N +F W
Sbjct: 111 CADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLW 170
Query: 122 ------------------------KFGIIRL---LIMFQKMPERDLVSWNTMISILTRHG 154
+ GI R+ +F ++ +RD++SWN+MIS +G
Sbjct: 171 NLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNG 230
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
+ L F ++ G + + ++ L G LH + ++ + +
Sbjct: 231 LSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNN 290
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
L+DMY K G + S+IQ+ FE M R+++SW +I+ ++
Sbjct: 291 CLLDMYSKSG--NLNSAIQV--------------------FETMGERSVVSWTSMIAGYA 328
Query: 275 QAGV----------LEKPRF---FFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCY 319
+ G+ +EK F ++L C+ +G + GK H + K +
Sbjct: 329 REGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLF 388
Query: 320 FV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
++D+ G +G+A + EM K V W ++G
Sbjct: 389 VSNALMDMYAKCGSMGDAHSVFSEMQVKDI-VSWNTMIGG 427
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 44/224 (19%)
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---------CNGI 228
Y + A + ++ G +HS + + +D +GS L+ MY+ CG
Sbjct: 104 YCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVA 163
Query: 229 ESSIQIGKALVTMYAEGGS------------------TQKADLAFELMSRRNMISWMVLI 270
+ + L+ YA+ G+ + A F+ + R++ISW +I
Sbjct: 164 NEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMI 223
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFT 315
S + G+ EK F VS+++GCS++G + G+ H + A F
Sbjct: 224 SGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFG 283
Query: 316 YTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
C++D+ SG L A ++ + M + + V W +++
Sbjct: 284 KELTLNNCLLDMYSKSGNLNSAIQVFETMGER-SVVSWTSMIAG 326
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 64/331 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH L+ K F + + + +D + K G+ D + R + F
Sbjct: 219 LHALIAKIGFERNAGVVNTMLDSYAKGGSRD------------------LEVARKV--FD 258
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL--SSMLYATAFSARASVYDL 191
M ERD+VSWN+MI++ ++G E + + ++ N G G+ +++ + A A +
Sbjct: 259 TM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAI 317
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
+ G +H++VV M G+E ++ +G ++V MY++ G + A
Sbjct: 318 QTGKRIHNQVVRM----------------------GLEENVYVGTSIVDMYSKCGRVEMA 355
Query: 252 DLAFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVSLLSGCSH 297
AF + +N++SW +I+ + G LE +P + F +S+L+ CSH
Sbjct: 356 SRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITF-ISVLAACSH 414
Query: 298 SGPVTKGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G + +G++++ AM + F ++ CMVDLLG +G L EA LI EM KP IWG
Sbjct: 415 AGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWG 474
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALL AC H N +LAE+ ++ L +LD G
Sbjct: 475 ALLSACRIHKNVELAEMSVKRLFELDASNSG 505
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 52 YNTMIN--GGVRCLCV------------GNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
Y+ M+N GG++C V G I+ +H V + + + S +DM+
Sbjct: 287 YSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMY 346
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
KCG V+ A A F+K+ E++++SW+ MI+ HG G
Sbjct: 347 SKCGRVEMASRA----------------------FRKIKEKNILSWSAMITGYGMHGRGQ 384
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSA 184
E L F E+ G + + + + +A
Sbjct: 385 EALEIFTEMKRSGLRPNYITFISVLAA 411
>gi|357125803|ref|XP_003564579.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Brachypodium distachyon]
Length = 456
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 166/369 (44%), Gaps = 51/369 (13%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
RV D P FT+ T++ + ++++ LH V KF S+ + + +D +
Sbjct: 31 RVLSDGIPPNEFTFGTVLRSAT---ALRDLRVGTQLHACVAKFGLCSNVFVGSALVDHYA 87
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMISI 149
K GA+ A+SA P++ + I L +FQ MPER++VSWN MI
Sbjct: 88 KMGAMAEAQSALGDTHEPNVVSYTALIAGFLKNGMFDDAHRLFQCMPERNVVSWNAMIGG 147
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
++ G E + F+E+ G + + ++ A+ L G +H+ + + LD
Sbjct: 148 CSQAGLNEEAVGLFLEMCRQGVRPNDSTFPCVLTSVANAGALGVGRSVHASAIKLLGKLD 207
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
V++G+ L+ Y +CG +E S+ LAF M ++N+++W L
Sbjct: 208 VYIGNSLVSCYARCG--SLEDSV--------------------LAFRKMKQKNLVTWNAL 245
Query: 270 ISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTA----MA 312
I ++Q G ++ + + LL GC+H+G V +G F A
Sbjct: 246 ICGYAQNGRGQEALGAYETMRAMGLKADNVTLLGLLFGCNHAGLVDEGYSLFKTAQLEQA 305
Query: 313 KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
++ C+VDLL + +AK+ + E+P +P W +++G C H+N LAE V
Sbjct: 306 GILKPEHYACVVDLLSRANRFDDAKRFLQELPFEPGIGFWKSMIGGCQIHWNKDLAESVA 365
Query: 373 RNLLQLDVK 381
+ LD K
Sbjct: 366 ERIQALDPK 374
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 9/162 (5%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP RD+V+ I LTR + + F + + G + + T + ++ DL G
Sbjct: 1 MPYRDVVAATAAIGALTRGSRHRDAVTLFSRVLSDGIPPNEFTFGTVLRSATALRDLRVG 60
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEG 245
LH+ V +VFVGS L+D Y K G + E ++ AL+ + +
Sbjct: 61 TQLHACVAKFGLCSNVFVGSALVDHYAKMGAMAEAQSALGDTHEPNVVSYTALIAGFLKN 120
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
G A F+ M RN++SW +I SQAG+ E+ F
Sbjct: 121 GMFDDAHRLFQCMPERNVVSWNAMIGGCSQAGLNEEAVGLFL 162
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 160/335 (47%), Gaps = 65/335 (19%)
Query: 66 GNI---KMALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
GN+ K HGL +KK + S+ + S +DM++KCG +D+A
Sbjct: 225 GNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFA--------------- 269
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F+++ RD+V W+ +I+ R+G E++ F ++ +S+ +A+
Sbjct: 270 -------LKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASI 322
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A +S+ L+ G +H ++ LDV + IDMY KCGC +VT
Sbjct: 323 VLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGC------------IVTA 370
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
Y F + +N+ SW +I+ F G+ + F+ F
Sbjct: 371 YR----------VFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTF 420
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
VS+LS CSHSG + +G +F +M++ ++ CMVDLLG +G + EA I+ MP
Sbjct: 421 VSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMP 480
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++P WGALLGAC H +LAE V + LL L+
Sbjct: 481 TEPGASAWGALLGACRIHRRAELAEEVAKKLLPLE 515
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSI--FLQLID---------DDYRVFCDIGPRYLFT 51
AC SL SL R +H +I + + + ID YRVFC I + +F+
Sbjct: 325 ACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFS 384
Query: 52 YNTMING-GVRCLC 64
++TMING G+ LC
Sbjct: 385 WSTMINGFGMHGLC 398
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 120/440 (27%), Positives = 187/440 (42%), Gaps = 106/440 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KAC + + KIH+ L+ +F++ DD +VF DI + +
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180
Query: 50 FTYNTMINGGVRC----LCVGNIKMALHL------HGLVKKF----------------YF 83
++ +I G + +G K L + LVK +
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240
Query: 84 VSDES------IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+SD +A S +DM+VKCG ++ A ++F MPE
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERAN----------------------LIFSAMPE 278
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D+VSW+TMI +G + L F ++ + SA A++ L+ G
Sbjct: 279 KDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWA 338
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
S + E + +G+ LIDMY KC GS +A F
Sbjct: 339 SSLMDRNEFLSNPVLGTALIDMYSKC----------------------GSVTQAWEIFTA 376
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTK 303
M +++ + W ++ S G K F F F+ LL GC+H G V +
Sbjct: 377 MKKKDRVVWNAMMVGLSMNG-HAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNE 435
Query: 304 GKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G+ +F M + F+ T ++ CMVDLLG +GLL EA +LI+ MP KP V+WGALLG C
Sbjct: 436 GRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGC 495
Query: 360 CSHYNTKLAELVMRNLLQLD 379
H +T LAE V++ L++L+
Sbjct: 496 KLHKDTHLAEQVLKKLIELE 515
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 41/244 (16%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F ++ E ++ WNTMI L + + + + GF ++ A A
Sbjct: 69 LVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKL 128
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D+ G +HS +V DVFV + L+ +Y+K C+ + ++++
Sbjct: 129 DVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVK--CDNFDDALKV--------------- 171
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAG-----------VLE---KPRFFFFFVSLLSGC 295
F+ + +N++SW +I+ + +G +LE KP F V +L+ C
Sbjct: 172 -----FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPD-SFSLVKVLAAC 225
Query: 296 SHSGPVTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ G T G+ Y + ++D+ G L A + MP K V W
Sbjct: 226 ARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDI-VSW 284
Query: 353 GALL 356
++
Sbjct: 285 STMI 288
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 64/331 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH L+ K F + + + +D + K G+ D + R + F
Sbjct: 220 LHALIAKIGFERNAGVVNTMLDSYAKGGSRD------------------LEVARKV--FD 259
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL--SSMLYATAFSARASVYDL 191
M ERD+VSWN+MI++ ++G E + + ++ N G G+ +++ + A A +
Sbjct: 260 TM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAI 318
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
+ G +H++VV M G+E ++ +G ++V MY++ G + A
Sbjct: 319 QTGKRIHNQVVRM----------------------GLEENVYVGTSIVDMYSKCGRVEMA 356
Query: 252 DLAFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVSLLSGCSH 297
AF + +N++SW +I+ + G LE +P + F +S+L+ CSH
Sbjct: 357 SRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITF-ISVLAACSH 415
Query: 298 SGPVTKGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G + +G++++ AM + F ++ CMVDLLG +G L EA LI EM KP IWG
Sbjct: 416 AGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWG 475
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALL AC H N +LAE+ ++ L +LD G
Sbjct: 476 ALLSACRIHKNVELAEMSVKRLFELDASNSG 506
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 52 YNTMIN--GGVRCLCV------------GNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
Y+ M+N GG++C V G I+ +H V + + + S +DM+
Sbjct: 288 YSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMY 347
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
KCG V+ A A F+K+ E++++SW+ MI+ HG G
Sbjct: 348 SKCGRVEMASRA----------------------FRKIKEKNILSWSAMITGYGMHGRGQ 385
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSA 184
E L F E+ G + + + + +A
Sbjct: 386 EALEIFTEMKRSGLRPNYITFISVLAA 412
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 104/450 (23%), Positives = 195/450 (43%), Gaps = 90/450 (20%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYLFTY 52
C + ++ R+IHA LI + +I ++ ++ +F + R +++
Sbjct: 489 CANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSW 548
Query: 53 NTMING--------------------GVR------------CLCVGNIKMALHLHGLVKK 80
N+MI G G++ C+ + + + LH + +
Sbjct: 549 NSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVR 608
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI---------M 131
+ + +DM+ KCG++DYA + + + + + + +
Sbjct: 609 NTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNL 668
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F +M +R+ WN++++ G E+ F+E+ + T + +S+ L
Sbjct: 669 FDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPAL 728
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
E G LHS ++ ++ C S+ + ALV MY++ G+ KA
Sbjct: 729 EHGDQLHSLIIK--------------KGFVNC-------SVVLETALVDMYSKCGAITKA 767
Query: 252 DLAFELMSRRNMISWMVLISAFSQAG--------VLEKPRFFFF-----FVSLLSGCSHS 298
F+ M+ +N++SW +IS +S+ G E P+ + F+++LS CSH+
Sbjct: 768 RTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHT 827
Query: 299 GPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G V +G FT+M + ++ CMVDLLG +G L +AK+ +++MP +P WGA
Sbjct: 828 GLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGA 887
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
LLGAC H + + L + L +LD + G
Sbjct: 888 LLGACRVHKDMDMGRLAAQRLFELDPQNPG 917
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/442 (20%), Positives = 166/442 (37%), Gaps = 105/442 (23%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFT 51
A L + R++H L+ L S I L ++++ ++VF + R +
Sbjct: 386 ASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVS 445
Query: 52 YNTMINGGVR---------------------------------CLCVGNIKMALHLHGLV 78
YN ++ G V+ C N +H +
Sbjct: 446 YNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHL 505
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ + + + M+ +CG ++YA+ +F +M ER
Sbjct: 506 IRANITKNIIVETELVHMYSECGRLNYAKE----------------------IFNRMAER 543
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSSMLYATAFSARASVYDLEW 193
+ SWN+MI ++G E L F ++ +G F LSSML S+ S+ D +
Sbjct: 544 NAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSML-----SSCVSLSDSQK 598
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAE 244
G LH+ +V + + L+DMY KCG I+ + + +V+ +
Sbjct: 599 GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVN 658
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF--------------VS 290
G A F+ M +RN W +++ ++ G L+K F F V+
Sbjct: 659 SGRANDAKNLFDQMEQRNTALWNSILAGYANKG-LKKESFNHFLEMLESDIEYDVLTMVT 717
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFV---CMVDLLGLSGLLGEAKKLIDEMPSK 346
+++ CS + G + + K + C V +VD+ G + +A+ + D M K
Sbjct: 718 IVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGK 777
Query: 347 PTCVIWGALLGACCSHYNTKLA 368
V W A++ H +K A
Sbjct: 778 -NIVSWNAMISGYSKHGCSKEA 798
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 124/303 (40%), Gaps = 62/303 (20%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
F D + + IDM+ KC D ES C K +F +M ER+ V+
Sbjct: 307 FKGDTFVGNALIDMYAKC---DDEES-----------CLK--------VFDEMGERNQVT 344
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN++IS + G + L F+ + G+ + + A A + D+ G LH +V
Sbjct: 345 WNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLV 404
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+ D+ +GS L+DMY KCG +E + Q+ ++L+ RN
Sbjct: 405 RNLLNSDIILGSALVDMYSKCGM--VEEAHQVFRSLL--------------------ERN 442
Query: 263 MISWMVLISAFSQAGVLEKPRFF--------------FFFVSLLSGCSHSGPVTKGKHYF 308
+S+ L++ + Q G E+ F F +LL+ C++ +G+
Sbjct: 443 EVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIH 502
Query: 309 TAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
+ + T + +L+ + G L AK++ + M + W +++ + T
Sbjct: 503 AHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER-NAYSWNSMIEGYQQNGET 561
Query: 366 KLA 368
+ A
Sbjct: 562 QEA 564
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 116/304 (38%), Gaps = 52/304 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDD---DYRVFCDIGP 46
++ C S + IH Q+IS +L +DD ++F ++
Sbjct: 78 IQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPE 137
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE----SIAKSSIDMHVKCGA 102
R L +NTMI R V + L L+G ++ SD+ S+ K+ I M G
Sbjct: 138 RNLTAWNTMILAYAR---VDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGV 194
Query: 103 VDYAESAFLRMLNPSLFCW--------KFG-IIRLLIMFQKMPERDLVSWNTMISILTRH 153
S LN +LF +FG + + ++ +V+WN +I+ +
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
E F + G + +A+A ++ + G +HS+++
Sbjct: 255 LSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLI----------- 303
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
CG G +G AL+ MYA+ + F+ M RN ++W +ISA
Sbjct: 304 --------ACGFKG---DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAE 352
Query: 274 SQAG 277
+Q G
Sbjct: 353 AQFG 356
>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
[Vitis vinifera]
Length = 836
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 119/440 (27%), Positives = 190/440 (43%), Gaps = 106/440 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+ C + S R +HA++I + S++ +Q +D VF + R +
Sbjct: 352 LSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDV 411
Query: 50 FTYNTMING--------------------GVRC------------LCVGNIKMALHLHGL 77
+ +MI G GV+ L + N+++ +HG
Sbjct: 412 VAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGF 471
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K SD +A S +DM+ K G +AESA + +F MP
Sbjct: 472 AIKRGLESDVFVACSLVDMYSKFG---FAESAEM-------------------VFSSMPN 509
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
++LV+WN+MIS + +G ++ ++ HGF L S+ T A +SV L G L
Sbjct: 510 KNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTL 569
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ + ++ D+ V + LIDMY+KCGC + A L FE
Sbjct: 570 HAYQIRLQIPSDLQVENALIDMYVKCGC----------------------LKYAQLIFEN 607
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M RRN+++W +I+ + G E+ F F++L++ CSHSG V +G
Sbjct: 608 MPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEG 667
Query: 305 KHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
+ F M + Y ++ +VDLLG +G L +A I MP +W LL AC
Sbjct: 668 LNLFQLM-RIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFAC 726
Query: 360 CSHYNTKLAELVMRNLLQLD 379
+H N +L ELV NLL+++
Sbjct: 727 RAHRNMELGELVADNLLKME 746
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 136/339 (40%), Gaps = 64/339 (18%)
Query: 46 PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105
P FT +++++G C VG+ +H V K S+ +I + + M+ KCG+ +
Sbjct: 342 PVDSFTISSLLSG---CSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTED 398
Query: 106 AESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165
A+S +F M ERD+V+W +MI+ ++ + L F
Sbjct: 399 ADS----------------------VFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRA 436
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
+ G S + + SA + ++E G +H + DVFV L+DMY K G
Sbjct: 437 MEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFG- 495
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE----- 280
+AE A++ F M +N+++W +IS +S G+ E
Sbjct: 496 ----------------FAE-----SAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINL 534
Query: 281 -----KPRFFFFFVSL---LSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGL 329
+ F+ VS+ L S + KGK + ++D+
Sbjct: 535 LPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVK 594
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
G L A+ + + MP + V W +++ SH N + A
Sbjct: 595 CGCLKYAQLIFENMPRR-NLVTWNSMIAGYGSHGNCEEA 632
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/422 (22%), Positives = 157/422 (37%), Gaps = 79/422 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFC------D 43
+K C SL +L R IHA +++ L S ++ L+ +VF D
Sbjct: 62 LKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRD 121
Query: 44 IGPRYLFTYNTMING---------GVRCLC----VGNIKMALHLHGLVKKFYFVSDESIA 90
P + +N +I+G G+ C + +HG + + F D +
Sbjct: 122 SAPD-ITVWNPVIDGYFKYGHFEEGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLE 180
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150
+ I M+ C A S F ++ N S ++V+WN MI
Sbjct: 181 TALIGMYSSCSRPMEAWSLFGKLENRS---------------------NIVAWNVMIGGF 219
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
+G ++L + N L S + AF+A + L++G +H V+ M D
Sbjct: 220 VENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDP 279
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV-- 268
+V + L+ MY K G S++ K + Q D EL R MIS +
Sbjct: 280 YVCTSLLTMYAKSG------SVEDAKKVF--------DQVLDKEVEL--RNAMISAFIGN 323
Query: 269 -----LISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCM 323
+ +++ E P F SLLSGCS G G+ + K +
Sbjct: 324 GRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQ 383
Query: 324 VDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
LL + G +A + M + V WG+++ C + K A + R + + V
Sbjct: 384 SALLTMYYKCGSTEDADSVFYTMKERDV-VAWGSMIAGFCQNRRFKDALDLFRAMEKEGV 442
Query: 381 KV 382
K
Sbjct: 443 KA 444
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 116/321 (36%), Gaps = 92/321 (28%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +++ C + N+ +H + SD IA S I+M+VKCG + A
Sbjct: 56 FTFPSLLK---TCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSA--- 109
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPER-----DLVSWNTMISILTRHGFGFETLCTFI 164
L +F KM E D+ WN +I ++G E L F
Sbjct: 110 -------------------LQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFC 150
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEW---GPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
+ +L W G +H ++ D ++ + LI MY
Sbjct: 151 RM----------------------QELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYS 188
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
C +E+ GK L +R N+++W V+I F + G+ EK
Sbjct: 189 SCS-RPMEAWSLFGK--------------------LENRSNIVAWNVMIGGFVENGMWEK 227
Query: 282 PRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT-CYFVC--MVD 325
+ F + CSH + G+ + K + +VC ++
Sbjct: 228 SLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLT 287
Query: 326 LLGLSGLLGEAKKLIDEMPSK 346
+ SG + +AKK+ D++ K
Sbjct: 288 MYAKSGSVEDAKKVFDQVLDK 308
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 181/407 (44%), Gaps = 87/407 (21%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHL------HGLV-------------- 78
++F ++ R + +YNTMI G + VGNI L L HGL
Sbjct: 184 QLFDEMSDRNVVSYNTMILGFAK---VGNILGILELFHDMRSHGLEPDDFTMLGLLLLCG 240
Query: 79 --------KKFYFVSDESIAKSSI-------DMHVKCGAVDYAESAFLRMLNPSLFCW-- 121
K + ++SI S++ DM+VKC + A F + W
Sbjct: 241 QLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNT 300
Query: 122 ------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174
K G + L +F ++P RD+VSWN++IS ++G C F ++
Sbjct: 301 IIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPD 360
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234
+ SA A + L+ G +H V M ++ F GS LIDMY KC
Sbjct: 361 KVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKC----------- 409
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------- 286
GS ++A + F + +++ +W +I+ F+ G K F
Sbjct: 410 -----------GSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETK 458
Query: 287 ----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAK 337
FVS+L+ CSHSG V +G F++M K Y+ ++ C+VDLL SG L +A
Sbjct: 459 PNDVTFVSVLAACSHSGLVDEGLKIFSSMKK-RYSIEPGVEHYGCLVDLLCRSGRLLDAI 517
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+I++MP +P+ IWGA+L AC H N +LAE + LL+L+ + G
Sbjct: 518 GVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEG 564
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 181/407 (44%), Gaps = 87/407 (21%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHL------HGLV-------------- 78
++F ++ R + +YNTMI G + VGNI L L HGL
Sbjct: 119 QLFDEMSDRNVVSYNTMILGFAK---VGNILGILELFHDMRSHGLEPDDFTMLGLLLLCG 175
Query: 79 --------KKFYFVSDESIAKSSI-------DMHVKCGAVDYAESAFLRMLNPSLFCW-- 121
K + ++SI S++ DM+VKC + A F + W
Sbjct: 176 QLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNT 235
Query: 122 ------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174
K G + L +F ++P RD+VSWN++IS ++G C F ++
Sbjct: 236 IIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPD 295
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234
+ SA A + L+ G +H V M ++ F GS LIDMY KC
Sbjct: 296 KVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKC----------- 344
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------- 286
GS ++A + F + +++ +W +I+ F+ G K F
Sbjct: 345 -----------GSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETK 393
Query: 287 ----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAK 337
FVS+L+ CSHSG V +G F++M K Y+ ++ C+VDLL SG L +A
Sbjct: 394 PNDVTFVSVLAACSHSGLVDEGLKIFSSMKK-RYSIEPGVEHYGCLVDLLCRSGRLLDAI 452
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+I++MP +P+ IWGA+L AC H N +LAE + LL+L+ + G
Sbjct: 453 GVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEG 499
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 173/373 (46%), Gaps = 61/373 (16%)
Query: 40 VFCDIGPRYLFTYNTMING-GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
V ++GP +TY ++ VR L G +H V K F SD + + I+M+
Sbjct: 121 VKNNVGPDN-YTYPLVVQACAVRLLEFG----GKEIHDHVLKVGFDSDVYVQNTLINMYA 175
Query: 99 KCGAVDYAESAFLRMLNPSLFCW--------KFG----IIRLLIMFQKMPERDLVSWNTM 146
CG + A F W K G ++ +F +M E+D+VSW+ +
Sbjct: 176 VCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSAL 235
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
IS ++G E L FIE+ +G L ++ + SA A + ++ G +H V+ M
Sbjct: 236 ISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGI 295
Query: 207 SLDVFVGSGLI----DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
V + + LI DMY+KCGC +E+++++ F M +
Sbjct: 296 ESYVNLQNALIHMYSDMYMKCGC--VENALEV--------------------FNGMEEKG 333
Query: 263 MISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFT 309
+ SW LI + G++E+ F F+ +L C H G V +G+ +F
Sbjct: 334 VSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFA 393
Query: 310 AMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
+M + ++ CMVDLLG +GLL EA+KLI+ MP P WGALLGAC H +T
Sbjct: 394 SMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDT 453
Query: 366 KLAELVMRNLLQL 378
++ E V R L++L
Sbjct: 454 EMGERVGRKLIEL 466
>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 705
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 175/382 (45%), Gaps = 62/382 (16%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D+ +F ++ R + T+ TM+ G + V + +K + V E S
Sbjct: 188 VDEAREIFDEMSERSVITWTTMVTGYGQNNRVDD----------ARKIFDVMPEKTEVSW 237
Query: 94 IDM---HVKCGAVDYAESAFLRM-LNPSLFC--------WKFGIIRLLIMFQKMPERDLV 141
M +V+ G ++ AE F M + P + C K I + +F M ER+
Sbjct: 238 TSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA 297
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
SW T+I I R+GF E L FI + G + + S AS+ L G +H+++
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
V + +DV+V S L+ MY+KCG LV K+ L F+ +
Sbjct: 358 VRCQFDVDVYVASVLMTMYIKCG------------ELV----------KSKLIFDRFPSK 395
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHY 307
++I W +IS ++ G+ E+ F FV+ LS CS++G V +G
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKI 455
Query: 308 FTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
+ +M T ++ CMVD+LG +G EA ++ID M +P +WG+LLGAC +H
Sbjct: 456 YESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHS 515
Query: 364 NTKLAELVMRNLLQLDVKVFGS 385
+AE + L++++ + G+
Sbjct: 516 QLDVAEFCAKKLIEIEPENSGT 537
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 206 PSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALVTMYAEGGSTQKADLAFE 256
P ++ +GL+ Y+K G E ++ ALV Y G A+ F
Sbjct: 75 PDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFW 134
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV---------SLLSGCSHSGPVTKGKHY 307
M +N +SW V++ F Q G ++ + + S++ G G V + +
Sbjct: 135 KMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREI 194
Query: 308 FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
F M++ + + MV G + + +A+K+ D MP K T V W ++L
Sbjct: 195 FDEMSERSVITW-TTMVTGYGQNNRVDDARKIFDVMPEK-TEVSWTSML 241
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 17/174 (9%)
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
P + R+ H+ + L D C+ SI ++V Y + A
Sbjct: 18 PTANVRITHLSRIGKIHEARKLFD-----SCDS--KSISSWNSMVAGYFANLMPRDARKL 70
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGK 305
F+ M RN+ISW L+S + + G +++ R F + +L+ G H+G V +
Sbjct: 71 FDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAE 130
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
F M + + V ++ L G + +A KL + +P K + G C
Sbjct: 131 SLFWKMPEKNKVSWTVMLIGFLQ-DGRIDDACKLYEMIPDKDNIARTSMIHGLC 183
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 126/451 (27%), Positives = 189/451 (41%), Gaps = 99/451 (21%)
Query: 2 KACGSLKSLPIARKIHAQLISTCL------ISSIFL-------QLIDDDYRVFCDIGPRY 48
K C ++K L +KIHA L+ T L +S + I+ Y VF I
Sbjct: 32 KHCTTMKDL---QKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPN 88
Query: 49 LFTYNTMINGG-------------VRCLCVGNIK--------------------MALHLH 75
LF++NT+I G + L V +++ LH
Sbjct: 89 LFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLH 148
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI----- 130
G V K D I + I M+ CG + AF ++ + W I+ L
Sbjct: 149 GRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVD 208
Query: 131 ----MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F +MP R+ VSWN+MIS R+G E L F ++ S + +A A
Sbjct: 209 ESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASA 268
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ L+ G +H + L+V V + +IDMY KCG IG+A
Sbjct: 269 RLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCG--------SIGEAFQV------ 314
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
FE+ + + SW +I + G + F FV +L+
Sbjct: 315 --------FEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLT 366
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
C++SG V K K YF+ M+K TY ++ CMVD LG +GLL EA++LI MP P
Sbjct: 367 ACNYSGLVDKAKEYFSLMSK-TYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPD 425
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+IW +LL AC H N +LA+ ++++ LD
Sbjct: 426 AIIWSSLLSACRKHGNVELAKRAAKHIVDLD 456
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 115/286 (40%), Gaps = 32/286 (11%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLYATAFSARASV 188
++F ++ +L SWNT+I ++ + FI+ L + Y + F A A +
Sbjct: 79 LVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQL 138
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALV 239
+G LH RV+ + D F+ + +I MY CG ++ I +++
Sbjct: 139 GLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMI 198
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFF 285
A+ G ++ F+ M RN +SW +IS + + G L KP
Sbjct: 199 MGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPS-E 257
Query: 286 FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDE 342
F VSLL+ + G + +G+ H + F ++D+ G +GEA ++ +
Sbjct: 258 FTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEM 317
Query: 343 MPSKP----TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
P K +I G + C + + L NL DV G
Sbjct: 318 APLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVG 363
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/400 (27%), Positives = 177/400 (44%), Gaps = 96/400 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+KAC +L +L +IH Q+I S ++ N +
Sbjct: 118 LKACSALSALAETHQIHVQIIKRGFGSEVY------------------------ATNSLL 153
Query: 61 RCLCV-GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
R + G+IK A L L+ VS ++ ID ++KCG V+ A
Sbjct: 154 RVYAISGSIKSAHVLFDLLPSRDIVSWNTM----IDGYIKCGNVEMAYK----------- 198
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
+FQ MPE++++SW +MI R G E LC ++ G + +
Sbjct: 199 -----------IFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLS 247
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ SA A + LE G +H+ + + +D +G LIDMY+KCG
Sbjct: 248 CSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCG--------------- 292
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS----------------QAGVLEKPR 283
+KA L F + ++ + +W +I F+ +AG+ KP
Sbjct: 293 -------EMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGI--KPT 343
Query: 284 FFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKL 339
F F ++L+ CSH+G V +GK F +M+ F ++ CMVDLLG +G L EAK+
Sbjct: 344 SFTF-TAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEF 402
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++ MP KP IWG+LL AC H + +L + + + L++LD
Sbjct: 403 VESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELD 442
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F ++ + V WNTMI + E L + ++ +H ++ + A +++
Sbjct: 66 MVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALS 125
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L +H +++ G S + +L+ +YA GS +
Sbjct: 126 ALAETHQIHVQIIK----------------------RGFGSEVYATNSLLRVYAISGSIK 163
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLE 280
A + F+L+ R+++SW +I + + G +E
Sbjct: 164 SAHVLFDLLPSRDIVSWNTMIDGYIKCGNVE 194
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 196/453 (43%), Gaps = 101/453 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC +++ H ++ + +F+ + D R F ++ R +
Sbjct: 117 LKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNV 176
Query: 50 FTYNTMING---------------GVR-----------------CLCVGNIKMA--LHLH 75
++N+MING G+R C GN++ +H H
Sbjct: 177 VSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSH 236
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGII 126
LV+ D +A + +DM+ KCG + A + F M + W + I
Sbjct: 237 LLVRGCRI--DLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASID 294
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
F+++PE+ ++SWN MIS + G E L + + G A SA
Sbjct: 295 AARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACG 354
Query: 187 SVYDLEWGPHLHS--RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ DL G +H R P + +F + L+DMY +CG Q+ A +++++E
Sbjct: 355 QLGDLASGKMIHDCIRDNFHNPGVALF--NSLLDMYARCG--------QVDTA-ISLFSE 403
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
M +N+ISW +I A + G + FF FV+L
Sbjct: 404 -------------MPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVAL 450
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
LS C+H G + G++YF AM + Y ++ CMVDLLG G L +A LI +MP +
Sbjct: 451 LSACNHGGLLEAGQYYFQAM-RHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMR 509
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P V+WGALLGAC H + ++ + V++ LL+L+
Sbjct: 510 PDVVVWGALLGACRIHGHIQIGKQVIKQLLELE 542
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 175/381 (45%), Gaps = 63/381 (16%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D+ +F ++ R + T+ M++G R G + +A +K + V E S
Sbjct: 195 LDEARALFDEMPKRNVVTWTAMVSGYARN---GKVDVA-------RKLFEVMPERNEVSW 244
Query: 94 IDM---HVKCGAVDYAESAFLRM-LNPSLFCWK----FG----IIRLLIMFQKMPERDLV 141
M + G + A S F M + P + C + FG + + +F+ M ERD
Sbjct: 245 TAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNG 304
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
+W+ MI + R G+ E L F + G L+ + S S+ L+ G +H+++
Sbjct: 305 TWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQL 364
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
V E D++V S LI MY+KCG + +A F +
Sbjct: 365 VRSEFDQDLYVASVLITMYVKCG----------------------NLVRAKQVFNRFPLK 402
Query: 262 NMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSGCSHSGPVTKGKHYF 308
+++ W +I+ +SQ G+ E+ P F+ +LS CS+SG V +G F
Sbjct: 403 DVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELF 462
Query: 309 TAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
M K Y ++ C+VDLLG + + EA KL+++MP +P ++WGALLGAC +H
Sbjct: 463 ETM-KCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHM 521
Query: 364 NTKLAELVMRNLLQLDVKVFG 384
LAE+ + L QL+ K G
Sbjct: 522 KLDLAEVAVEKLAQLEPKNAG 542
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 18/241 (7%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF-GLSSMLYATAFSAR-A 186
L++F+KMP+R+ VSWN +IS ++G E F + + +SM+ + A
Sbjct: 75 LLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVA 134
Query: 187 SVYDLEWGPHL-HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
L W H+ H VV L + G +D K E + ++ Y E
Sbjct: 135 EAERLFW--HMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEE 192
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCS 296
G +A F+ M +RN+++W ++S +++ G ++ R F + ++L G +
Sbjct: 193 GRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYT 252
Query: 297 HSGPVTKGKHYFTAMA-KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
HSG + + F AM K C + M GL+G + +A+++ M + W A+
Sbjct: 253 HSGRMREASSLFDAMPVKPVVVCNEMIMG--FGLNGEVDKARRVFKGMKERDNGT-WSAM 309
Query: 356 L 356
+
Sbjct: 310 I 310
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------F 287
A+V Y E ++A L FE M +RN +SW LIS + G+L + R F
Sbjct: 60 AMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVS 119
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+ S++ G +G V + + F M + V + LL G + +A+KL D MP K
Sbjct: 120 WTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLL-QEGRVDDARKLFDMMPEKD 178
Query: 348 TCVIWGALLGAC 359
+ + G C
Sbjct: 179 VVAVTNMIGGYC 190
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 196/453 (43%), Gaps = 101/453 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC +++ H ++ + +F+ + D R F ++ R +
Sbjct: 117 LKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNV 176
Query: 50 FTYNTMING---------------GVR-----------------CLCVGNIKMA--LHLH 75
++N+MING G+R C GN++ +H H
Sbjct: 177 VSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSH 236
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGII 126
LV+ D +A + +DM+ KCG + A + F M + W + I
Sbjct: 237 LLVRGCRI--DLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASID 294
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
F+++PE+ ++SWN MIS + G E L + + G A SA
Sbjct: 295 AARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACG 354
Query: 187 SVYDLEWGPHLHS--RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ DL G +H R P + +F + L+DMY +CG Q+ A +++++E
Sbjct: 355 QLGDLASGKMIHDCIRDNFHNPGVALF--NSLLDMYARCG--------QVDTA-ISLFSE 403
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
M +N+ISW +I A + G + FF FV+L
Sbjct: 404 -------------MPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVAL 450
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
LS C+H G + G++YF AM + Y ++ CMVDLLG G L +A LI +MP +
Sbjct: 451 LSACNHGGLLEAGQYYFQAM-RHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMR 509
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P V+WGALLGAC H + ++ + V++ LL+L+
Sbjct: 510 PDVVVWGALLGACRIHGHIQIGKQVIKQLLELE 542
>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 190/438 (43%), Gaps = 90/438 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC S LP + +HA+ I +F+ ++ D +VF + R +
Sbjct: 58 LKACDSHPFLPYVKSLHAESIKAGSDVDVFIGTAIVAAYAKCGVVCDARKVFDLMPERNV 117
Query: 50 FTYNTMINGGVRCLCVGNIKMAL----HLHG--------------------LVKKF---- 81
T+N MI G +R G+ K AL + G +KF
Sbjct: 118 VTWNAMIGGYLRN---GDAKSALLAFEEMPGKTRVSWSQMIGGFARNGDTLTARKFFDKV 174
Query: 82 -YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIM 131
Y + D I +D + K G ++ A F M + F W K ++ +
Sbjct: 175 PYELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAI 234
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F+++P R+L WN+MI+ ++G G + L F E+ GF + SA A + DL
Sbjct: 235 FRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDL 294
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
+ G +H + +++ FV SGLIDMY KCG LV A
Sbjct: 295 DAGKQMHHMIECKGIAVNQFVLSGLIDMYAKCG------------DLVN----------A 332
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHS 298
L FE + RN+ W +I+ F+ G + + F+++LS C+H
Sbjct: 333 RLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIRLDAVTFITVLSACAHG 392
Query: 299 GPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G +++ + M ++ ++ CMVDLLG +G L EA +LI MP KP + GA+
Sbjct: 393 GLMSEALEVISKMEEYGIEMGIRHYGCMVDLLGRAGKLKEAYELIKRMPMKPNETVLGAM 452
Query: 356 LGACCSHYNTKLAELVMR 373
+GAC H + K+AE VM+
Sbjct: 453 IGACWIHSDMKMAEQVMK 470
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 75/169 (44%), Gaps = 11/169 (6%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G + + IG A+V YA+ G A F+LM RN+++W +I + + G + F
Sbjct: 81 GSDVDVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAF 140
Query: 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMA-KFTYTCYFVCMVDLLGLSGLLGEA 336
+ ++ G + +G + +F + + + MVD G + +A
Sbjct: 141 EEMPGKTRVSWSQMIGGFARNGDTLTARKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDA 200
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+++ + MP + +W +++ C + AE + R + +++++ S
Sbjct: 201 REVFELMPER-NYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNS 248
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 196/458 (42%), Gaps = 123/458 (26%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYL 49
+K+C +L L R+ H Q + +F+ L+D D +F +I R +
Sbjct: 159 IKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNI 218
Query: 50 FTYNTMINGGVRC-------------------------LCVGNIKMALHL---------- 74
++ +MI G V+ +CV I M L
Sbjct: 219 VSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKS 278
Query: 75 -----HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129
HG + K F D + + +D + KCG + G+ R +
Sbjct: 279 ITEGVHGFLIKRGFEGDLGVENTLMDAYAKCG--------------------ELGVSRRV 318
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG------FGLSSMLYATAFS 183
F M ERD++SWN++I++ ++G E++ F + G LS++L A A S
Sbjct: 319 --FDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHS 376
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
+ G +H +V+ M G+ES++ +G +++ MY
Sbjct: 377 GSQRL-----GKCIHDQVIKM----------------------GLESNVFVGTSIIDMYC 409
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVS 290
+ G + A AF+ M +N+ SW +++ + G ++ F+ FVS
Sbjct: 410 KCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVS 469
Query: 291 LLSGCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+L+ CSH+G + +G H+F AM+ +F ++ CMVDLLG +G L EA LI M +
Sbjct: 470 VLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR 529
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
P V+WGALLGAC H N L E+ R L +LD K G
Sbjct: 530 PDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCG 567
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 99/255 (38%), Gaps = 48/255 (18%)
Query: 128 LLIMFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
L +F K ++ ++ SWN++I+ L R G E L F + + + A + +
Sbjct: 104 LTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCS 163
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
++ DL G H + + D+FV S L+DMY KC G
Sbjct: 164 ALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKC----------------------G 201
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------------- 286
+ A F+ +S RN++SW +I+ + Q + F
Sbjct: 202 ELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDP 261
Query: 287 -FFVSLLSGCSH--SGPVTKGKHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDE 342
VS+LS CS +T+G H F F ++D G LG ++++ D
Sbjct: 262 IAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDG 321
Query: 343 MPSKPTCVIWGALLG 357
M + + W +++
Sbjct: 322 MAERDV-ISWNSIIA 335
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/421 (27%), Positives = 182/421 (43%), Gaps = 80/421 (19%)
Query: 19 QLIS-TCLISSIFLQLIDDDYRVFCDIGP-RYLFTYNTMINGGVRCLCVGNIKMALHL-- 74
+LIS CL+ + + D R D P R + ++NTMI+G + VG++ A L
Sbjct: 200 ELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQ---VGDLSQAKRLFN 256
Query: 75 -------------------HGLVKKFYFVSDESIAKSSIDMHVK-CGAVDYAESAFLRML 114
+G+V + DE K+ I + G V Y + L
Sbjct: 257 ESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGEL 316
Query: 115 NPSLFC-----WKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
++ C W GI + +F MP+RD VSW +IS ++G E L
Sbjct: 317 FEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEAL 376
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F+E+ G + ++ A S A + LE G +H +VV FVG+ L+ MY
Sbjct: 377 NMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMY 436
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KC GST +A+ FE + ++++SW +I+ +++ G
Sbjct: 437 FKC----------------------GSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGR 474
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCM 323
+ F V +LS CSHSG + +G YF +M + + ++ CM
Sbjct: 475 QALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCM 534
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383
+DLLG +G L EA+ L+ MP P WGALLGA H NT+L E + +++ +
Sbjct: 535 IDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNS 594
Query: 384 G 384
G
Sbjct: 595 G 595
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 80/376 (21%), Positives = 149/376 (39%), Gaps = 52/376 (13%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+F + R LF++N M+ G VR +G A L L+ K VS ++ + + +
Sbjct: 99 LFDKMPERDLFSWNVMLTGYVRNRRLGE---AHKLFDLMPKKDVVSWNAM----LSGYAQ 151
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLI----------MFQKMPERDLVSWNTMISI 149
G VD A F +M + + W G++ + +F+ +L+SWN ++
Sbjct: 152 NGFVDEAREVFNKMPHRNSISWN-GLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGG 210
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ L +L++ + + T S A V DL R+ + P D
Sbjct: 211 YVKRNM----LGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQA----KRLFNESPIRD 262
Query: 210 VFVGSGLIDMYLKCGC--------NGIESSIQIG-KALVTMYAEGGSTQKADLAFELMSR 260
VF + ++ Y++ G + + +I A++ Y + A FE M
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPC 322
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAM 311
RN+ SW +I+ + Q G + + R F + +++SG + +G + + F M
Sbjct: 323 RNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382
Query: 312 A-------KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
+ T++C D+ L L + + + + C + ALLG +
Sbjct: 383 KRDGESSNRSTFSCALSTCADIAALE-LGKQVHGQVVKAGFETGCFVGNALLGMYFKCGS 441
Query: 365 TKLAELVMRNLLQLDV 380
T A V + + DV
Sbjct: 442 TDEANDVFEGIEEKDV 457
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 97/265 (36%), Gaps = 64/265 (24%)
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
K + D+V+WN IS R+G L F N SS+ Y S
Sbjct: 40 KFKDPDIVTWNKAISSHMRNGHCDSALRVF----NSMPRRSSVSYNAMISGYLRNAKFSL 95
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALVTMYAE 244
L ++ P D+F + ++ Y++ G + + A+++ YA+
Sbjct: 96 ARDLFDKM----PERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQ 151
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------------ 286
G +A F M RN ISW L++A+ G L++ R F
Sbjct: 152 NGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGY 211
Query: 287 ----------------------FFVSLLSGCSHSGPVTKGKHYFTA---MAKFTYTCYFV 321
+ +++SG + G +++ K F FT+T
Sbjct: 212 VKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWT---- 267
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSK 346
MV +G++ EA+K DEMP K
Sbjct: 268 AMVSGYVQNGMVDEARKYFDEMPVK 292
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 176/374 (47%), Gaps = 62/374 (16%)
Query: 39 RVFC-DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
++FC DI P L T+ ++ G + L G A+H V KF F+ D +A S I ++
Sbjct: 116 QMFCKDIVPNCL-TFPFLLKGCTQWL-DGATGQAIHTQ--VIKFGFLKDVYVANSLISLY 171
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMIS 148
+ G + A F ML + W G+ + +F+KM R++++WN++I+
Sbjct: 172 MAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIIT 231
Query: 149 ILTRHGFGFETLCTFIE---LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
L + G E+L F E L + + A+ SA A + ++ G +H
Sbjct: 232 GLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHG------ 285
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
YL+ NGIE + IG ALV MY + G QKA FE M ++ +
Sbjct: 286 --------------YLRR--NGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASA 329
Query: 266 WMVLISAFS----------------QAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFT 309
W V+IS F+ +AGV KP F V LLS C+HSG V +G+ F
Sbjct: 330 WTVMISVFALHGLGWKAFNCFLEMEKAGV--KPNHVTF-VGLLSACAHSGLVEQGRWCFD 386
Query: 310 AMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
M + ++ CMVD+L + L E++ LI MP KP +WGALLG C H N
Sbjct: 387 VMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDVYVWGALLGGCQMHGNV 446
Query: 366 KLAELVMRNLLQLD 379
+L E V+ +L+ L+
Sbjct: 447 ELGEKVVHHLIDLE 460
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 144/308 (46%), Gaps = 61/308 (19%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+DM+ +C V+ A F++M WK RDL +W MI L
Sbjct: 193 VDMYARCKVVEDAHQIFVKM-------WK---------------RDLATWTVMIGALAES 230
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E+L F + N G + T A A + + +H+ + SLDV +G
Sbjct: 231 GVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILG 290
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+ +IDMY KC GS + A F+ M RN+I+W +I+A+
Sbjct: 291 TAMIDMYAKC----------------------GSVESARWIFDRMQVRNVITWSAMIAAY 328
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC- 318
G EK F FVSLL CSH+G + +G+ +F++M ++ T
Sbjct: 329 GYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPD 388
Query: 319 --YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CMVDLLG +G L EA ++I+ MP + V+WGALLGAC H + LAE V R+LL
Sbjct: 389 VKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLL 448
Query: 377 QLDVKVFG 384
+L + G
Sbjct: 449 KLQSQKPG 456
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
++ + NG ++ + L+ MY E G+ + A F+ MS+R+ SW V++ +++ G
Sbjct: 72 VHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGN 131
Query: 279 LEKPRFFFFFVSLLSGC---SHSGPVT-------------KGKHYFTAMAKFTYTCYFVC 322
F+ F L SG +S PV + H T Y +FVC
Sbjct: 132 FFSC-FWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYG-HFVC 189
Query: 323 --MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+VD+ ++ +A ++ +M K W ++GA
Sbjct: 190 ATLVDMYARCKVVEDAHQIFVKM-WKRDLATWTVMIGA 226
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 155/345 (44%), Gaps = 50/345 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G ++ +H + K F SD S+ + +M+ KCG++ AE F +M N ++ W
Sbjct: 396 CSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAW 455
Query: 122 KFGIIRLLI----------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
++ + I +F +M R++VSWN MI+ + G + + GF
Sbjct: 456 A-SLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGF 514
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ + A ++ LE G +H+ V + D V + LI MY KC
Sbjct: 515 QPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKC-------- 566
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK---------- 281
G +A F+ +S R+ ++W +++ + Q G+ +
Sbjct: 567 --------------GEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLK 612
Query: 282 ---PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLG 334
P F +++S C +G V +G+ F M + ++ CMVDLLG +G L
Sbjct: 613 ERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQ 672
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA++ I MP +P +W ALLGAC SH N +LAE ++L+L+
Sbjct: 673 EAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLE 717
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 130/310 (41%), Gaps = 66/310 (21%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
++ A +H +VK +D ++A + I M+ KCG + SL C
Sbjct: 195 LEKAREIHTVVKASGMETDVAVATALITMYSKCGEI-------------SLACE------ 235
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+FQKM ER++VSW +I +H E + ++ G +++ + + ++ +
Sbjct: 236 ---IFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
L G +HS + DV V + LI MY KC C
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNC---------------------- 330
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-------------RFFFF-----FV 289
Q A F+ MS+R++ISW +I+ ++Q+G +K R F F+
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFM 390
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
S+L CS G + +G+ ++K + + ++ G + EA+++ +M +K
Sbjct: 391 SILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK 450
Query: 347 PTCVIWGALL 356
V W +LL
Sbjct: 451 -NVVAWASLL 459
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 41/266 (15%)
Query: 119 FCWKFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
F KFG + + +F++M RD+V+W++MI+ + + TF + + + +
Sbjct: 122 FYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRIT 181
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
+ + A + LE +H+ V DV V + LI MY KCG + I
Sbjct: 182 FLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEI----- 236
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
F+ M RN++SW +I A +Q L + +
Sbjct: 237 -----------------FQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPN 279
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLID 341
FVSLL+ C+ + +G+ + +++ V L+ + + +A++ D
Sbjct: 280 AVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFD 339
Query: 342 EMPSKPTCVIWGALL-GACCSHYNTK 366
M SK + W A++ G S Y K
Sbjct: 340 RM-SKRDVISWSAMIAGYAQSGYQDK 364
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 179/410 (43%), Gaps = 85/410 (20%)
Query: 8 KSLPIARKIHAQ------LISTCLISSIFLQLIDDD-YRVFCDIGPRYLFTY----NTMI 56
+ + +ARKI Q ++ T +IS L ++++ +F R+L N++
Sbjct: 299 RDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIF-----RWLLQERMRANSVT 353
Query: 57 NGGVRCLCVGNIKMAL--HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRML 114
V C G + L LHG + K + + +DM+ KCG +D A F+
Sbjct: 354 LASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFI--- 410
Query: 115 NPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174
+ ++D V WN+MI+ +++G E + F ++ G
Sbjct: 411 -------------------GISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYD 451
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234
+ + A SA A++ L +G +H+ ++ D+F S LIDMY KCG
Sbjct: 452 CVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCG---------- 501
Query: 235 GKALVTMYAEGGSTQKADLA---FELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---- 287
DLA F+ M +N +SW +I+A+ G L+ F
Sbjct: 502 ---------------NLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLG 546
Query: 288 ---------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLG 334
F++++S C H+G V +G HYF M + ++ CMVDL G +G L
Sbjct: 547 DGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLN 606
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
EA +I+ MP P +WG LLGAC H N +LAE+ RNL LD + G
Sbjct: 607 EAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSG 656
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/430 (22%), Positives = 151/430 (35%), Gaps = 112/430 (26%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLIDDDYRVFCDIGPRYLFT------- 51
+KACG L S+ + R +H ++ +F+ LI C RYLF
Sbjct: 154 IKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDG 213
Query: 52 --YNTMINGGVR------------------------------CLCVGNIKMAL--HLHGL 77
+N M+NG V+ +C I + LHGL
Sbjct: 214 VLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGL 273
Query: 78 VKKFYFVSDESIAKS--SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM 135
V D +A + ID++ KC V+ A F Q+
Sbjct: 274 VVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIF---------------------DQRT 312
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
P D+V MIS +G L F L +S+ A+ A A + L G
Sbjct: 313 PV-DIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGK 371
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
LH ++ +VGS ++DMY KCG + DLA
Sbjct: 372 ELHGHILKNGHGGSCYVGSAIMDMYAKCG-------------------------RLDLAH 406
Query: 256 EL---MSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSL-------------LSGCSHSG 299
+ +S ++ + W +I++ SQ G E+ F + + LS C++
Sbjct: 407 QTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLP 466
Query: 300 PVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ GK H F F + ++D+ G L A ++ D M K V W +++
Sbjct: 467 ALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNE-VSWNSII 525
Query: 357 GACCSHYNTK 366
A +H K
Sbjct: 526 AAYGNHGRLK 535
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 179/410 (43%), Gaps = 85/410 (20%)
Query: 8 KSLPIARKIHAQ------LISTCLISSIFLQLIDDD-YRVFCDIGPRYLFTY----NTMI 56
+ + +ARKI Q ++ T +IS L ++++ +F R+L N++
Sbjct: 398 RDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIF-----RWLLQERMRANSVT 452
Query: 57 NGGVRCLCVGNIKMAL--HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRML 114
V C G + L LHG + K + + +DM+ KCG +D A F+
Sbjct: 453 LASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFI--- 509
Query: 115 NPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174
+ ++D V WN+MI+ +++G E + F ++ G
Sbjct: 510 -------------------GISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYD 550
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234
+ + A SA A++ L +G +H+ ++ D+F S LIDMY KCG
Sbjct: 551 CVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCG---------- 600
Query: 235 GKALVTMYAEGGSTQKADLA---FELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---- 287
DLA F+ M +N +SW +I+A+ G L+ F
Sbjct: 601 ---------------NLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLG 645
Query: 288 ---------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLG 334
F++++S C H+G V +G HYF M + ++ CMVDL G +G L
Sbjct: 646 DGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLN 705
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
EA +I+ MP P +WG LLGAC H N +LAE+ RNL LD + G
Sbjct: 706 EAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSG 755
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 104/266 (39%), Gaps = 65/266 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLIDDDYRVFCDIGPRYLFT------- 51
+KACG L S+ + R +H ++ +F+ LI C RYLF
Sbjct: 154 IKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDG 213
Query: 52 --YNTMINGGVR------------------------------CLCVGNIKMAL--HLHGL 77
+N M+NG V+ +C I + LHGL
Sbjct: 214 VLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGL 273
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V D +A + + M+ KCG + F RL F MP+
Sbjct: 274 VVSSGLEMDSPVANTLLAMYAKCGHL-------------------FDARRL---FDMMPK 311
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
DLV+WN MIS ++GF E C F E+ + S+ +++ + L G +
Sbjct: 312 TDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEI 371
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKC 223
H ++ SLDVF+ S LID+Y KC
Sbjct: 372 HCYIIRNGVSLDVFLKSALIDIYFKC 397
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 22/156 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP +D V WN M++ ++G F+E+ +S+ +A S AS
Sbjct: 204 LFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIM 263
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ +G LH VV +D V + L+ MY KC G
Sbjct: 264 INFGSQLHGLVVSSGLEMDSPVANTLLAMYAKC----------------------GHLFD 301
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
A F++M + ++++W +IS + Q G +++ F
Sbjct: 302 ARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLF 337
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 86/241 (35%), Gaps = 61/241 (25%)
Query: 143 WNTMISILTRHG-FGFETLCTFIELWNHGFGLSSMLYATAFSARA--SVYDLEWGPHLHS 199
WN MI T G F F L F L G G Y + +A + + G +H
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKML---GCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
++ M LDVFVGS +L+ Y+E G A F+ M
Sbjct: 172 KIQFMGFELDVFVGS----------------------SLIKFYSENGCIHDARYLFDRMP 209
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCS---------- 296
++ + W V+++ + + G + F F +LS C+
Sbjct: 210 SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQ 269
Query: 297 -HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
H V+ G + +A Y C G L +A++L D MP K V W +
Sbjct: 270 LHGLVVSSGLEMDSPVANTLLAMYAKC--------GHLFDARRLFDMMP-KTDLVTWNGM 320
Query: 356 L 356
+
Sbjct: 321 I 321
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 155/343 (45%), Gaps = 49/343 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++++ +H L K + + I M+ KCG V+ F + W
Sbjct: 565 CANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSW 624
Query: 122 KFGIIRL---------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I L ++F+KMP+RD+VSW +IS + G G L F+++ G
Sbjct: 625 NSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIK 684
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + + SA ++ ++ G H+ + + +FVG+ LI MY KCG
Sbjct: 685 PNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-------- 736
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
Y +G FE M ++I+W ++ +Q G+ ++ F
Sbjct: 737 ---------YEDGFCV------FEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVE 781
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
F+ +L CSH+G V +G +F +M + ++ CMVDLLG +G L E
Sbjct: 782 GILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSE 841
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
A+ LI+ MP KP VIW ALLGAC H N +L + V L Q+
Sbjct: 842 AEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQM 884
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 95/397 (23%), Positives = 170/397 (42%), Gaps = 51/397 (12%)
Query: 5 GSLKSLPIARKIHAQLISTCLISSIFLQ--LIDDDYRVFCDIGPRYLFTYNTMINGGVRC 62
GSL+ + I ++ I + + + +D F + R +++ TMI +C
Sbjct: 381 GSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQC 440
Query: 63 LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM--HVKCGAVDYAESAFLRMLNPSLFC 120
G + A+ L + V ++++A + M + + G + A F +LNP++
Sbjct: 441 ---GRLDDAIQL------YERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVA 491
Query: 121 W--------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W + G+++ +FQKMP ++ SW MI+ ++ E L IEL G
Sbjct: 492 WNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGS 551
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
S + +A SA A++ D+E G +HS + + +V +GLI MY KCG +E
Sbjct: 552 VPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCG--NVEDG 609
Query: 232 IQIGK-----------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+ + +L++ +E A + FE M +R+++SW +ISA+ QAG E
Sbjct: 610 SHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGE 669
Query: 281 KPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLL 327
F SLLS C + G + G+ + + K + + L+
Sbjct: 670 VALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLI 729
Query: 328 GLSGLLGEAKK--LIDEMPSKPTCVIWGALLGACCSH 362
+ G + +EMP + W A+L C +
Sbjct: 730 TMYFKCGYEDGFCVFEEMPEH-DLITWNAVLVGCAQN 765
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 148/377 (39%), Gaps = 66/377 (17%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKM-------------ALHLHGLVKK 80
+++ RVF ++ R + ++N+MING + V ++ + L G K+
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKE 246
Query: 81 ---------FYFVSDESIA--KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK------- 122
F +++ ++ + I +V+ G + A F M ++ W
Sbjct: 247 GRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYC 306
Query: 123 --FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ + +F +MPER+ VSW MIS +E F+++ ++
Sbjct: 307 HCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVV 366
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
SA + DLE +GS L + +K G G + +G A++
Sbjct: 367 VLSAITGLDDLE------------------LIGS-LRPIAIKTGYEG---DVVVGSAILN 404
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV---------SL 291
Y GS A FE M RN SW +I+AF+Q G L+ + V ++
Sbjct: 405 AYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAM 464
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
++ + G + K + F + + + +G+L EAK L +MP K +
Sbjct: 465 MTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQ-NGMLKEAKDLFQKMPVKNSAS- 522
Query: 352 WGALLGACCSHYNTKLA 368
W A++ + ++ A
Sbjct: 523 WAAMIAGFVQNEESREA 539
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-FFVS--------LLSGCS 296
G ++A F M +R+++SW +I+ +SQ G +++ R F FV LL+G +
Sbjct: 185 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYA 244
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G + + + F +M + + M+ +G L A+KL DEMP K W +++
Sbjct: 245 KEGRIEEAREVFESMTERNVVSWN-AMISGYVQNGDLKNARKLFDEMPEK-NVASWNSVV 302
Query: 357 GACCSHYNTKLA 368
C Y A
Sbjct: 303 TGYCHCYRMSEA 314
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 167/378 (44%), Gaps = 67/378 (17%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM-- 96
R+F + R +FT+ M++G V+ +G++ + DE K+ +
Sbjct: 256 RLFDESPTRDVFTWTAMVSGYVQ-------------NGMLDEAKTFFDEMPEKNEVSYNA 302
Query: 97 ----HVKCGAVDYAESAFLRMLNPSLFCWK-----FG----IIRLLIMFQKMPERDLVSW 143
+V+ +D A F M ++ W +G I + F MP+RD VSW
Sbjct: 303 MIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSW 362
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
+I+ + G E L F+E+ G L+ + A S A + LE G +H + V
Sbjct: 363 AAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVK 422
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
M FVG+ L+ MY KC GS +A+ FE + +++
Sbjct: 423 MGYGTGCFVGNALLAMYFKC----------------------GSIDEANDTFEGIEEKDV 460
Query: 264 ISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTA 310
+SW +++ +++ G + F V +LS CSH+G + +G YF +
Sbjct: 461 VSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYS 520
Query: 311 MAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
M K + ++ CM+DLLG +G L EA+ LI MP +P WGALLGA H NT+
Sbjct: 521 MTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTE 580
Query: 367 LAELVMRNLLQLDVKVFG 384
L E + +++ + G
Sbjct: 581 LGEKAAEMVFKMEPQNSG 598
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/343 (20%), Positives = 132/343 (38%), Gaps = 72/343 (20%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+F + R LF++N M+ G VR +G+ A L L+ + VS S+ + + +
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGD---ARRLFDLMPEKDVVSWNSL----LSGYAQ 154
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
G VD A +F MPE++ +SWN +++ +G E
Sbjct: 155 NGYVDEARE----------------------VFDNMPEKNSISWNGLLAAYVHNGR-IEE 191
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
C E + +S F + + D W + P D +
Sbjct: 192 ACLLFESKSDWDLISWNCLMGGFVRKKKLGDARW-------LFDKMPVRDAISWN----- 239
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
+++ YA+GG +A F+ R++ +W ++S + Q G+L
Sbjct: 240 -----------------TMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGML 282
Query: 280 EKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLS 330
++ + FF + ++++G + + + F +M + + M+ G
Sbjct: 283 DEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNT-MITGYGQI 341
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLG--ACCSHYNTKLAELV 371
G + +A+K D MP + CV W A++ A HY L V
Sbjct: 342 GDIAQARKFFDMMPQR-DCVSWAAIIAGYAQSGHYEEALNMFV 383
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 102/261 (39%), Gaps = 34/261 (13%)
Query: 112 RMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
R+ +P + W I L +F MP R VS+N MIS R+
Sbjct: 43 RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102
Query: 163 FIELWNHG-FGLSSMLYATAFSAR----ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
F ++ F + ML + R ++DL VV L + +G +
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDL----MPEKDVVSWNSLLSGYAQNGYV 158
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
D + N E + L+ Y G ++A L FE S ++ISW L+ F +
Sbjct: 159 DEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKK 218
Query: 278 VLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVD 325
L R+ F + +++SG + G +++ + F FT+T MV
Sbjct: 219 KLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWT----AMVS 274
Query: 326 LLGLSGLLGEAKKLIDEMPSK 346
+G+L EAK DEMP K
Sbjct: 275 GYVQNGMLDEAKTFFDEMPEK 295
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 104/273 (38%), Gaps = 31/273 (11%)
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
++ + D++ WN IS R+G L H F + +++A S Y
Sbjct: 43 RVKDPDILKWNKAISTHMRNGHCDSAL--------HVFNTMPRRSSVSYNAMISGYLRNS 94
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLK-CGCNGI--------ESSIQIGKALVTMYAE 244
+L + P D+F + ++ Y++ C E + +L++ YA+
Sbjct: 95 KFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS---------LLSGC 295
G +A F+ M +N ISW L++A+ G +E+ F S L+ G
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGF 214
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP----TCVI 351
+ + F M + M+ G L +A++L DE P++ T ++
Sbjct: 215 VRKKKLGDARWLFDKMP-VRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMV 273
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
G + T E+ +N + + + G
Sbjct: 274 SGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAG 306
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 188/454 (41%), Gaps = 86/454 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+ AC S K+ ++HA + + S +++ L+D + +VF + R +
Sbjct: 154 LSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNI 213
Query: 50 FTYNTMI-----NGGVR---------------------------CLCVGNIKMALHLHG- 76
++N++I NG V C + + +H
Sbjct: 214 VSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTR 273
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIR 127
+VK F D + + +DM+ KCG A+ F RM S+ + +
Sbjct: 274 MVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGD 333
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F +M E+++V+WN +I+ + E L F+ L + Y +A A+
Sbjct: 334 AQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACAN 393
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ +L+ G H V+ D +G ES + +G +LV MY + GS
Sbjct: 394 LANLQLGQQAHVHVLKEGFRFD----------------SGPESDVFVGNSLVDMYLKTGS 437
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294
FE M+ R+ +SW +I ++Q G + F + +LS
Sbjct: 438 ISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSA 497
Query: 295 CSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C HSG V +G+ YF +M + ++ CM+DLLG +G L E ++LI+ MP +P V
Sbjct: 498 CGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAV 557
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+W +LLGAC H N + E L +LD G
Sbjct: 558 LWASLLGACRLHKNIDMGEWAAGKLFELDPDNSG 591
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 111/273 (40%), Gaps = 43/273 (15%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F +P+ D S+N +++ L +HG G + L + F L++ +A+A SA AS
Sbjct: 101 LALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASE 160
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
G +H+ V DV++G+ L+DMY KC
Sbjct: 161 KASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKC----------------------ERP 198
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGC 295
++A F+ M RN++SW LI+ + Q G +++ F S++S C
Sbjct: 199 EEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSAC 258
Query: 296 SHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----P 347
+ +G+ T M K +VD+ G EAK + D M +
Sbjct: 259 AGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSE 318
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
T +I G A ++V +N++ +V
Sbjct: 319 TSMITGYAKSANVGDAQAVFLQMVEKNVVAWNV 351
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 163/358 (45%), Gaps = 53/358 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD---YA 106
FTY+ +I G R ++ +HG V + ++ + S ++++ G D A
Sbjct: 117 FTYSFLIGGCARSRL---LREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKA 173
Query: 107 ESAFLRMLNPSLFCWK---FGIIR------LLIMFQKMPERDLVSWNTMISILTRHGFGF 157
F +++ ++ W G +R +F +MPER++VSW TMI+ + G
Sbjct: 174 RRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCK 233
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
+ L F E+ G L + A SA A + DL+ G +HS I
Sbjct: 234 QALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHS----------------YI 277
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
D L G + + + +L+ MYA G KA F M +R+ ISW +I+ F++ G
Sbjct: 278 DERLHAGNQPL--LVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQG 335
Query: 278 VLEKPRFFF----------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYT 317
E+ F F+ +L CSH+G V +G+H+F M K
Sbjct: 336 HAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRI 395
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ CMVDLL +G L EA +LI+ MP KP +WGALLG C H N +LA V + L
Sbjct: 396 EHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKL 453
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/448 (26%), Positives = 185/448 (41%), Gaps = 110/448 (24%)
Query: 1 MKACGSLKSLPI-ARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDI--GP 46
+K+C +L SLPI + H Q+ + F+Q L+D+ +VF +
Sbjct: 47 LKSCAAL-SLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSR 105
Query: 47 RYLFTYNTMINGGVR--------------------------------CLCVGNIKMALHL 74
+ YN +++G V C+ N+++ L
Sbjct: 106 KLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSL 165
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H K+ F SD S+ I M++KCG+V+YA+ +F +
Sbjct: 166 HCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQK----------------------LFDE 203
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP + L+SWN M+S ++G L + + +G + S+ A++ G
Sbjct: 204 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG 263
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
H M+ S G S+ + AL+ MYA G+ KA
Sbjct: 264 ---HEVEFKMQAS-------------------GFTSNPFLNNALINMYARCGNLTKAQAV 301
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
F+ M R ++SW +I + G E F FV +LS CSH+G
Sbjct: 302 FDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLT 361
Query: 302 TKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+G YF M K Y ++ CMVDLLG +G L EA+ LI+ MP KP +WGALL
Sbjct: 362 DQGLEYFK-MMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALL 420
Query: 357 GACCSHYNTKLAELVMRNLLQLDVKVFG 384
GAC H N +LAEL +++L+ + G
Sbjct: 421 GACKIHKNVELAELAFERVIELEPENIG 448
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 126/330 (38%), Gaps = 61/330 (18%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
HG + K V + + I M+ K VD A F
Sbjct: 61 QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFE--------------------- 99
Query: 133 QKMPERDL-VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
+ R L V +N ++S + + + F ++ G ++S+ A S +L
Sbjct: 100 ENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINL 159
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
E G LH + DV V + I MY+KC GS A
Sbjct: 160 ELGSSLHCSTLKYGFDSDVSVVNCFITMYMKC----------------------GSVNYA 197
Query: 252 DLAFELMSRRNMISWMVLISAFSQAG----VLEKPRFF---------FFFVSLLSGCSHS 298
F+ M + +ISW ++S ++Q G VLE R V +LS C++
Sbjct: 198 QKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANL 257
Query: 299 GPVTKGKHYFTAM--AKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G + G M + FT + ++++ G L +A+ + D MP + T V W A+
Sbjct: 258 GAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPER-TLVSWTAI 316
Query: 356 LGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+G H + ++A + + +++ ++ G+
Sbjct: 317 IGGYGMHGHGEIAVQLFKEMIRSGIEPDGT 346
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 167/378 (44%), Gaps = 67/378 (17%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM-- 96
R+F + R +FT+ M++G V+ +G++ + DE K+ +
Sbjct: 256 RLFDESPTRDVFTWTAMVSGYVQ-------------NGMLDEAKTFFDEMPEKNEVSYNA 302
Query: 97 ----HVKCGAVDYAESAFLRMLNPSLFCWK-----FG----IIRLLIMFQKMPERDLVSW 143
+V+ +D A F M ++ W +G I + F MP+RD VSW
Sbjct: 303 MIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSW 362
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
+I+ + G E L F+E+ G L+ + A S A + LE G +H + V
Sbjct: 363 AAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVK 422
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
M FVG+ L+ MY KC GS +A+ FE + +++
Sbjct: 423 MGYGTGCFVGNALLAMYFKC----------------------GSIDEANDTFEGIEEKDV 460
Query: 264 ISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTA 310
+SW +++ +++ G + F V +LS CSH+G + +G YF +
Sbjct: 461 VSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYS 520
Query: 311 MAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
M K + ++ CM+DLLG +G L EA+ LI MP +P WGALLGA H NT+
Sbjct: 521 MTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTE 580
Query: 367 LAELVMRNLLQLDVKVFG 384
L E + +++ + G
Sbjct: 581 LGEKAAEMVFKMEPQNSG 598
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/343 (20%), Positives = 132/343 (38%), Gaps = 72/343 (20%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+F + R LF++N M+ G VR +G+ A L L+ + VS S+ + + +
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGD---ARRLFDLMPEKDVVSWNSL----LSGYAQ 154
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
G VD A +F MPE++ +SWN +++ +G E
Sbjct: 155 NGYVDEARE----------------------VFDNMPEKNSISWNGLLAAYVHNGR-IEE 191
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
C E + +S F + + D W + P D +
Sbjct: 192 ACLLFESKSDWDLISWNCLMGGFVRKKKLGDARW-------LFDKMPVRDAISWN----- 239
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
+++ YA+GG +A F+ R++ +W ++S + Q G+L
Sbjct: 240 -----------------TMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGML 282
Query: 280 EKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLS 330
++ + FF + ++++G + + + F +M + + M+ G
Sbjct: 283 DEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNT-MITGYGQI 341
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLG--ACCSHYNTKLAELV 371
G + +A+K D MP + CV W A++ A HY L V
Sbjct: 342 GDIAQARKFFDMMPQR-DCVSWAAIIAGYAQSGHYEEALNMFV 383
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 26/257 (10%)
Query: 112 RMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
R+ +P + W I L +F MP R VS+N MIS R+
Sbjct: 43 RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102
Query: 163 FIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F ++ F + ML + R + VV L + +G +D
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR 162
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
+ N E + L+ Y G ++A L FE S ++ISW L+ F + L
Sbjct: 163 EVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGD 222
Query: 282 PRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGL 329
R+ F + +++SG + G +++ + F FT+T MV
Sbjct: 223 ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWT----AMVSGYVQ 278
Query: 330 SGLLGEAKKLIDEMPSK 346
+G+L EAK DEMP K
Sbjct: 279 NGMLDEAKTFFDEMPEK 295
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 104/273 (38%), Gaps = 31/273 (11%)
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
++ + D++ WN IS R+G L H F + +++A S Y
Sbjct: 43 RVKDPDILKWNKAISTHMRNGHCDSAL--------HVFNTMPRRSSVSYNAMISGYLRNS 94
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLK-CGCNGI--------ESSIQIGKALVTMYAE 244
+L + P D+F + ++ Y++ C E + +L++ YA+
Sbjct: 95 KFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS---------LLSGC 295
G +A F+ M +N ISW L++A+ G +E+ F S L+ G
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGF 214
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP----TCVI 351
+ + F M + M+ G L +A++L DE P++ T ++
Sbjct: 215 VRKKKLGDARWLFDKMP-VRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMV 273
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
G + T E+ +N + + + G
Sbjct: 274 SGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAG 306
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 163/358 (45%), Gaps = 53/358 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD---YA 106
FTY+ +I G R ++ +HG V + ++ + S ++++ G D A
Sbjct: 31 FTYSFLIGGCARSRL---LREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKA 87
Query: 107 ESAFLRMLNPSLFCWK---FGIIR------LLIMFQKMPERDLVSWNTMISILTRHGFGF 157
F +++ ++ W G +R +F +MPER++VSW TMI+ + G
Sbjct: 88 RRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCK 147
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
+ L F E+ G L + A SA A + DL+ G +HS I
Sbjct: 148 QALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHS----------------YI 191
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
D L G + + + +L+ MYA G KA F M +R+ ISW +I+ F++ G
Sbjct: 192 DERLHAGNQPL--LVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQG 249
Query: 278 VLEKPRFFF----------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYT 317
E+ F F+ +L CSH+G V +G+H+F M K
Sbjct: 250 HAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRI 309
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ CMVDLL +G L EA +LI+ MP KP +WGALLG C H N +LA V + L
Sbjct: 310 EHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKL 367
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 165/352 (46%), Gaps = 48/352 (13%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T+I C +G++++ LH V + + +DM+VKCG+++ A S F R+
Sbjct: 226 TVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERI 285
Query: 114 LNPSLFCWKFGII---RLLIM------FQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
N + W I+ RL +M F +MPERD+ WN +++ ++ G E + F
Sbjct: 286 SNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFH 345
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
E+ + + SA + + LE G +H ID +
Sbjct: 346 EMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHH----------------YIDRH---- 385
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF 284
+ S+ +G +LV MYA+ G+ +KA F + +N ++W +I + G ++
Sbjct: 386 --KLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIE 443
Query: 285 FF-------------FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYT---CYFVCMVDLL 327
+F F+ +LS C H+G V G+ +F+ M AK+ ++ CM+DLL
Sbjct: 444 YFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLL 503
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
G +G L EA++L++ MP P V+WGAL AC H N L E L++LD
Sbjct: 504 GRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELD 555
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 117/278 (42%), Gaps = 28/278 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL--SSMLYATAFSARASV 188
+F + P RD+VSWNT+I R G E L F L G + + A S A +
Sbjct: 178 LFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQM 237
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI------QIGKALVTM- 241
DLE G LH V + V + + ++DMY+KCG + +S+ + + TM
Sbjct: 238 GDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMI 297
Query: 242 --YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
+A G + A + F+ M R++ W L++ + Q ++ F
Sbjct: 298 VGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEI 357
Query: 288 -FVSLLSGCSHSGPVTKG---KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
V+LLS CS G + G HY +VD+ G + +A + +E+
Sbjct: 358 TMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEI 417
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
P + + W +++ +H + A + ++ L ++
Sbjct: 418 PVQ-NALTWTSMICGLANHGHADEAIEYFQRMIDLGLQ 454
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 154/339 (45%), Gaps = 43/339 (12%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---------FCWK 122
+H H +VK+ D + + +DM+ KCG A F M + S+ +
Sbjct: 32 VHAH-MVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKS 90
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
+ ++F +M E+++++WN +I+ ++G E + F++L + Y
Sbjct: 91 ANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVL 150
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
+A ++ L+ G H V+ D G ES + +G +LV MY
Sbjct: 151 NACGNIAVLQLGQQAHVHVLKEGFRFDF----------------GPESDVFVGNSLVDMY 194
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
+ GS FE M+ R+ +SW +I ++Q G + F +
Sbjct: 195 LKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMI 254
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+LS C HSG V +G+ +F M + ++ CMVDLLG +G L EA++LI +MP+
Sbjct: 255 GVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPT 314
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+P V+W +LLGAC H N +L E L +LD + G
Sbjct: 315 EPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSG 353
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/454 (24%), Positives = 188/454 (41%), Gaps = 86/454 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+ AC + K L ++H + + + + L+D D RVF + R +
Sbjct: 158 LSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNV 217
Query: 50 FTYNTMI-----NGGV---------------------------RCLCVGNIKMALHLHG- 76
++N++I NG V C + + +H
Sbjct: 218 VSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAH 277
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIR 127
+VK+ D + + +DM+ KCG A F M + S+ + +
Sbjct: 278 MVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVED 337
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
++F +M E+++++WN +I+ ++G E + F++L + Y +A +
Sbjct: 338 AQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGN 397
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ L+ G H V+ D G ES + +G +LV MY + GS
Sbjct: 398 IAVLQLGQQAHVHVLKEGFRFDF----------------GPESDVFVGNSLVDMYLKTGS 441
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294
FE M+ R+ +SW +I ++Q G + F + +LS
Sbjct: 442 IDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSA 501
Query: 295 CSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C HSG V +G+ +F M + ++ CMVDLLG +G L EA++LI +MP++P V
Sbjct: 502 CGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSV 561
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+W +LLGAC H N +L E L +LD + G
Sbjct: 562 LWASLLGACRLHKNVELGERTAGRLFELDPENSG 595
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 116/269 (43%), Gaps = 42/269 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGF--ETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F+ +P+ D S+N +++ L RHG G + L + F L++ +A+A SA A+
Sbjct: 105 LFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAE 164
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
DL G +H V + DV +G+ L+DMY KC E +
Sbjct: 165 KDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKC-----ERPVD--------------- 204
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------FFV------SLLSGC 295
A F+ M RN++SW LI+ + Q G + + F FF S++S C
Sbjct: 205 --ARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSAC 262
Query: 296 SHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
+ +G+ M K +VD+ G EA+ + D MPS+ + V
Sbjct: 263 AGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR-SVVS 321
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDV 380
++L N + A++V +++ +V
Sbjct: 322 ETSILAGYAKSANVEDAQVVFSQMVEKNV 350
>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
lyrata]
gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
lyrata]
Length = 828
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 136/279 (48%), Gaps = 41/279 (14%)
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
F K I + + +F MPE+D ++W MIS +G+ E LC F ++ +S +
Sbjct: 382 FSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTF 441
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
++ SA AS+ DL G +H RVV M + D+ V + L+ MY KC
Sbjct: 442 SSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKC--------------- 486
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
G+T A F +S N++S+ +IS FS G ++ F
Sbjct: 487 -------GNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNG 539
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLI 340
F++LLS C H G V G YF +M KF+Y ++ CMVDL G SGLL EA LI
Sbjct: 540 VTFLALLSACVHVGYVDLGWKYFKSM-KFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLI 598
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP +P +WG+LL A +H LAEL + L++L+
Sbjct: 599 STMPCEPHSGVWGSLLSASKTHLRVDLAELAAKKLIELE 637
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 110/265 (41%), Gaps = 28/265 (10%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVK-KFYFVSDESIAKSSIDM 96
Y +FCDI + +Y TMI G VR G A L+ KF D + +
Sbjct: 133 YELFCDIPEKNAVSYATMITGFVRA---GRFDEAECLYAETPVKF---RDPVASNVLLSG 186
Query: 97 HVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+++ G + A F M + +C I+ +F +MPER++++W MI
Sbjct: 187 YLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDARSLFDRMPERNVITWTAMI 246
Query: 148 SILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
+ GF + F+ + G ++S A F A + G +H + M
Sbjct: 247 DGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDFFRYREGSQIHGLLSRMPL 306
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIG----------KALVTMYAEGGSTQKADLAFE 256
D+F+G+ LI MY K G G E+ G +L+T + +A FE
Sbjct: 307 EFDLFLGNSLISMYSKLGYMG-EAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFE 365
Query: 257 LMSRRNMISWMVLISAFSQAGVLEK 281
M ++M+SW +I FS G + K
Sbjct: 366 KMPGKDMVSWTDMIKGFSGKGEISK 390
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 35/214 (16%)
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII---------RLLIMFQKMPERDLV 141
S I + G + AE+ F +M + S+ W I + +F +MP R
Sbjct: 54 NSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVRATT 113
Query: 142 SWNTMISILTRH----GFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASVYDLEWGP 195
S+N MI+ + ++ G +E C E +++ YAT + RA +D
Sbjct: 114 SYNAMITAMIKNKCDLGKAYELFCDIPEK-------NAVSYATMITGFVRAGRFDEAECL 166
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA---------LVTMYAEGG 246
+ + V +P + SG YL+ G + G A +V Y + G
Sbjct: 167 YAETPVKFRDPVASNVLLSG----YLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMG 222
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
A F+ M RN+I+W +I + +AG E
Sbjct: 223 RILDARSLFDRMPERNVITWTAMIDGYFKAGFFE 256
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 32/158 (20%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
L +HG V K +D S+ S + M+ KCG + A
Sbjct: 457 GLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYK---------------------- 494
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV-- 188
+F + E ++VS+NTMIS + +GFG E + F L + G + + + SA V
Sbjct: 495 IFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGY 554
Query: 189 YDLEWGPHLHSRVVH-MEPS-------LDVFVGSGLID 218
DL W + + +EP +D+F SGL+D
Sbjct: 555 VDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLD 592
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298
++ A G+ Q+A+ F MS R+++SW +ISA+++ G + K F + + + S++
Sbjct: 57 ISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVRATTSYN 116
Query: 299 GPVTK--------GKHY--FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+T GK Y F + + Y M+ +G EA+ L E P K
Sbjct: 117 AMITAMIKNKCDLGKAYELFCDIPEKNAVSY-ATMITGFVRAGRFDEAECLYAETPVK 173
>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
gb|AF151215 and contains multiple PPR PF|01535 repeats
[Arabidopsis thaliana]
Length = 816
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 135/279 (48%), Gaps = 41/279 (14%)
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
F K I + + +F MPE+D ++W MIS +G+ E LC F ++ +S +
Sbjct: 382 FSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTF 441
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
++ SA AS+ DL G +H RVV M D+ V + L+ MY KC
Sbjct: 442 SSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKC--------------- 486
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
G+T A F +S N++S+ +IS +S G +K F
Sbjct: 487 -------GNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLI 340
F++LLS C H G V G YF +M K +Y ++ CMVDLLG SGLL +A LI
Sbjct: 540 VTFLALLSACVHVGYVDLGWKYFKSM-KSSYNIEPGPDHYACMVDLLGRSGLLDDASNLI 598
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP KP +WG+LL A +H LAEL + L++L+
Sbjct: 599 STMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELE 637
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 123/332 (37%), Gaps = 49/332 (14%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVK-KFYFVSDESIAKSSIDM 96
Y +FCDI + +Y TMI G VR G A L+ KF D + +
Sbjct: 133 YELFCDIPEKNAVSYATMITGFVRA---GRFDEAEFLYAETPVKF---RDSVASNVLLSG 186
Query: 97 HVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+++ G + A F M + +C I+ +F +M ER++++W MI
Sbjct: 187 YLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMI 246
Query: 148 SILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
+ GF + F+ + G ++S A F A G +H V M
Sbjct: 247 DGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPL 306
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
D+F +G +L++MY++ G +A F +M ++ +SW
Sbjct: 307 EFDLF----------------------LGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSW 344
Query: 267 MVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317
LI+ Q + + F + ++ G S G ++K F M +
Sbjct: 345 NSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
+ M+ +G EA +M K C
Sbjct: 405 TW-TAMISAFVSNGYYEEALCWFHKMLQKEVC 435
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLV 141
S I H + G + AE+ F +M N S+ W + + +F +MP R
Sbjct: 54 NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113
Query: 142 SWNTMISILTRH----GFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASVYDLEWGP 195
S+N MI+ + ++ G +E C E +++ YAT + RA +D
Sbjct: 114 SYNAMITAMIKNKCDLGKAYELFCDIPE-------KNAVSYATMITGFVRAGRFD----- 161
Query: 196 HLHSRVVHMEPSL---DVFVGSGLIDMYLKCGCNGIESSIQIGKA---------LVTMYA 243
+ ++ E + D + L+ YL+ G + G A +V Y
Sbjct: 162 --EAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYC 219
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+ G A F+ M+ RN+I+W +I + +AG E
Sbjct: 220 KMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFE 256
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 44/164 (26%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
L +HG V K V+D S+ S + M+ KCG + A
Sbjct: 457 GLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYK---------------------- 494
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG---FGLSSMLYATA------ 181
+F + E ++VS+NTMIS + +GFG + L F L + G G++ + +A
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554
Query: 182 -------FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
F + S Y++E GP H +D+ SGL+D
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPD------HYACMVDLLGRSGLLD 592
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298
++ +A G+ Q+A+ F MS R+++SW+ +ISA+++ G + K F + + S++
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYN 116
Query: 299 GPVTK--------GKHY--FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+T GK Y F + + Y M+ +G EA+ L E P K
Sbjct: 117 AMITAMIKNKCDLGKAYELFCDIPEKNAVSY-ATMITGFVRAGRFDEAEFLYAETPVK 173
>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15340, mitochondrial; Flags: Precursor
gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 162/349 (46%), Gaps = 54/349 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ A HG+ K ++ + + +DM+ KCG V + F + S+ W
Sbjct: 121 CAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSW 180
Query: 122 KF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGF 171
G+ R +F +MPER+ V+W M++ GF E L E+ + G
Sbjct: 181 TVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGH 240
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL-------DVFVGSGLIDMYLKCG 224
GL+ + + SA A +L G +H + E + DV VG+ L+DMY KCG
Sbjct: 241 GLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCG 300
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------- 277
I+SS+ + F LM +RN+++W L S + G
Sbjct: 301 --NIDSSMNV--------------------FRLMRKRNVVTWNALFSGLAMHGKGRMVID 338
Query: 278 -----VLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGL 329
+ E F ++LS CSHSG V +G F ++ + ++ CMVDLLG
Sbjct: 339 MFPQMIREVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRFYGLEPKVDHYACMVDLLGR 398
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+GL+ EA+ L+ EMP P V+ G+LLG+C H ++AE + R L+Q+
Sbjct: 399 AGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQM 447
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 36/272 (13%)
Query: 131 MFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F ++P E+D V W T++S +R+G ++ F+E+ + + F A +
Sbjct: 65 LFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKL 124
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALV 239
DL + H V M V V + L+DMY KCG E S+ ++
Sbjct: 125 EDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVL 184
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFF 285
+ ++ F M RN ++W V+++ + AG VLE F
Sbjct: 185 DTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNF 244
Query: 286 FFFVSLLSGCSHSGPVTKGK--HYFT--------AMAKFTYTCYFVCMVDLLGLSGLLGE 335
S+LS C+ SG + G+ H + A + +VD+ G +
Sbjct: 245 VTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDS 304
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
+ + M K V W AL H ++
Sbjct: 305 SMNVFRLM-RKRNVVTWNALFSGLAMHGKGRM 335
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 159/341 (46%), Gaps = 68/341 (19%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G+ +MA+ +HG F+ D S+ S + M+ KCG V+
Sbjct: 246 LGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVE-------------------- 285
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
R ++F +M ER+ +SWN+M+S T++G + L F ++ + + SA
Sbjct: 286 --RARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSA 343
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ + G LH+ V+ + +D + + ++DMY+KCG
Sbjct: 344 CSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCG-------------------- 383
Query: 245 GGSTQKADLAFEL-----MSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
D A E+ + R++ SW VLIS + G ++ F
Sbjct: 384 -----DLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDI 438
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEM 343
F S+LS CSH+G + +G+ F M K + ++ CMVD+LG +G L EA +LI ++
Sbjct: 439 TFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKI 498
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
PS+P+ +WGALL AC H NT+L E+ NL QL+ + G
Sbjct: 499 PSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTG 539
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 44/204 (21%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG V + F SD + + +DM+ KCG + A F RML
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLI------------------ 195
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
RD+V W MI++ + + L F ++ GF + + SA + D
Sbjct: 196 ----RDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRM 251
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
+H V L+ F+G + +G ++V MYA+ G+ ++A L
Sbjct: 252 AISVHGYAV-----LNGFIG-----------------DVSVGNSIVGMYAKCGNVERARL 289
Query: 254 AFELMSRRNMISWMVLISAFSQAG 277
F+ M RN ISW ++S ++Q G
Sbjct: 290 VFDRMEERNGISWNSMLSGYTQNG 313
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 25/139 (17%)
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
NTM+ G +E + +I + G G+++ Y AS +G +H +VV
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
D+FV + L+DMY KCG +IG A F+ M R++
Sbjct: 161 TGFGSDLFVEAALVDMYAKCG--------EIG--------------DAHEVFDRMLIRDV 198
Query: 264 ISWMVLISAFSQAGVLEKP 282
+ W +I+ + QA E+P
Sbjct: 199 VCWTAMITLYEQA---ERP 214
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ + LH V D ++ + +DM++KCG +D A + M N
Sbjct: 344 CSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTA----VEMFNNC---- 395
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++ ERD+ SWN +IS HG G E L F + G + + + +
Sbjct: 396 ------------ELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSI 443
Query: 182 FSA 184
SA
Sbjct: 444 LSA 446
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 134/280 (47%), Gaps = 39/280 (13%)
Query: 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
+++C G+ +F +P RD+V+W M++ + GF E + F + G M
Sbjct: 341 TMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKM 400
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ +A ++ +S L+ G +H ++VH SLDV++ S L+ MY KC
Sbjct: 401 TFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKC------------- 447
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
GS A L F MS RN+++W +I+ +Q G + +F
Sbjct: 448 ---------GSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKP 498
Query: 287 ---FFVSLLSGCSHSGPVTKGKHYFTAM----AKFTYTCYFVCMVDLLGLSGLLGEAKKL 339
F S+LS C+H G V +G+ +F +M ++ C VDLLG +G L EA+ +
Sbjct: 499 DKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENV 558
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
I MP +P +WGALL AC H + + E N+L+LD
Sbjct: 559 ILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLD 598
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/421 (18%), Positives = 158/421 (37%), Gaps = 104/421 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
++ C L+SL R++HA ++ + + + +L+ + D RVF I R +
Sbjct: 103 LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNI 162
Query: 50 FTYNTMING---GVRCL----CVGNIKMA-------------------------LHLHGL 77
++ MI G + L C +K+A +H
Sbjct: 163 VSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHME 222
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ K + + S + M+ KCG + A+ ++F K+PE
Sbjct: 223 IAKAGLELEPRVGTSLVGMYAKCGDISKAQ----------------------VIFDKLPE 260
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+++V+W +I+ + G L ++ + + Y + + LE G +
Sbjct: 261 KNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKV 320
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H ++ +G I + AL+TMY + G ++A F
Sbjct: 321 HRYIIQ----------------------SGYGREIWVVNALITMYCKCGGLKEARKLFGD 358
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+ R++++W +++ ++Q G ++ F F S L+ CS + +G
Sbjct: 359 LPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEG 418
Query: 305 K--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K H A ++ Y +V + G + +A+ + ++M S+ V W A++ C
Sbjct: 419 KSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQM-SERNVVAWTAMITGCAQ 477
Query: 362 H 362
H
Sbjct: 478 H 478
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/350 (20%), Positives = 134/350 (38%), Gaps = 75/350 (21%)
Query: 37 DYRVFCDIG--PRYLFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFY 82
D + C G L NTMI G R C + +++ +H + K
Sbjct: 67 DVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSG 126
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
+ + + + M+ KCG++ A +F + +R++VS
Sbjct: 127 IQPNRYLENTLLSMYAKCGSLTDARR----------------------VFDGIRDRNIVS 164
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W MI E + + G + + + +A + L+ G +H +
Sbjct: 165 WTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIA 224
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
G+E ++G +LV MYA+ G KA + F+ + +N
Sbjct: 225 KA----------------------GLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKN 262
Query: 263 MISWMVLISAFSQAG-------VLEKPRFF------FFFVSLLSGCSHSGPVTKGK--HY 307
+++W +LI+ ++Q G +LEK + + S+L GC+ + GK H
Sbjct: 263 VVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHR 322
Query: 308 FTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ + + + V ++ + G L EA+KL ++P + V W A++
Sbjct: 323 YIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAMV 371
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 185/424 (43%), Gaps = 68/424 (16%)
Query: 1 MKACGSLKSLPIARKIHAQL----------ISTCLISSIF---LQLIDDDYRVFCDIGPR 47
+KAC + + IHAQ+ + LI S F L + +VF + R
Sbjct: 122 LKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAER 181
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
++N+MI G V+ VG + A L + + VS +I +D +VK G ++ A
Sbjct: 182 DTVSWNSMIGGLVK---VGELGEARRLFDEMPERDTVSWNTI----LDGYVKAGEMNAAF 234
Query: 108 SAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFE 158
F +M ++ W K G + + I+F KMP ++LV W MIS G +
Sbjct: 235 ELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKD 294
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
+ + ++ G + SA A L G +H+ + V + LID
Sbjct: 295 AINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALID 354
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
MY KCG +E+++ I F M R++++SW +I + G
Sbjct: 355 MYAKCGS--LENALSI--------------------FHGMVRKDVVSWNAIIQGLAMHGH 392
Query: 279 LEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFV 321
EK F FV +L C+H+G V +G HYF AM + ++
Sbjct: 393 GEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYG 452
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
CMVDLLG G L EA +L+ MP +P +IWG LLGAC H T LAE V L++ ++
Sbjct: 453 CMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELS 512
Query: 382 VFGS 385
G+
Sbjct: 513 DSGN 516
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 37/234 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA---TAFSARAS 187
+F ++ + D++ +NT+I R+ F E+ + G + Y A S +
Sbjct: 71 VFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVW 130
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
V +E +H++V M LD+FV + LID Y KCG +G+ ++ ++
Sbjct: 131 VRVVEM---IHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKV------------- 174
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHS 298
FE+M+ R+ +SW +I + G L + R F + ++L G +
Sbjct: 175 -------FEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKA 227
Query: 299 GPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
G + F M + MV +G + A+ L D+MP K V W
Sbjct: 228 GEMNAAFELFEKMPARNVVSW-STMVLGYSKAGDMDMARILFDKMPVK-NLVPW 279
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 160/343 (46%), Gaps = 48/343 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++ +A +H ++K D ++ + I + +CG++DYA F ++ W
Sbjct: 202 CGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVW 261
Query: 122 KFGIIRLL---------IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I + + +FQ MP+RD+VSWN+MI R G E L F E+ G
Sbjct: 262 NTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVS 321
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+++ + SA AS L+ G +H+ V + + D + S LIDMY KCG I+ ++
Sbjct: 322 PNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCG--DIDKAV 379
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
QI FE +RR++ +W ++ + G EK +F
Sbjct: 380 QI--------------------FEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEA 419
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
V +LS C+H+G + +G YF +M K ++ MVDLLG G L E
Sbjct: 420 QVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKE 479
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
A LI MP + +IWGA L AC H N +L E+ R LL L
Sbjct: 480 AYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGL 522
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 93/260 (35%), Gaps = 44/260 (16%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+K +H V + F E ++ + + +V CG V F M P L W II
Sbjct: 106 EVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTL-II 164
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
R + PE+ L + TM + G + +T SA
Sbjct: 165 RAYVCV-TFPEKALELFRTMREV--------------------GLTPDMVAVSTVVSACG 203
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKA 237
+ DL +H + +D FV S LI Y +CG +I +
Sbjct: 204 LLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNT 263
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---------- 287
++ E + + F+ M R+++SW +I F++ G ++ +F
Sbjct: 264 MIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPN 323
Query: 288 ---FVSLLSGCSHSGPVTKG 304
+S LS C+ G + G
Sbjct: 324 ALTLLSTLSACASHGALDTG 343
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 175/400 (43%), Gaps = 80/400 (20%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVR--------------------------------CLCV 65
++VF + R L ++N++ING VR C +
Sbjct: 209 HKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQL 268
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---- 121
++K+ +H +++ S+ + +DM+VKCG ++ + F M ++ W
Sbjct: 269 ESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMI 328
Query: 122 ----KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
K G++ + +F MPE+++V+WN MI + FE L F E+ +
Sbjct: 329 VGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKV 388
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
SA + + L+ G H+ + SLDV +G+ LIDMY
Sbjct: 389 TMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMY---------------- 432
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
A+ G+ KA F M RRN ++W +I + G + F+F
Sbjct: 433 ------AKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMP 486
Query: 287 ---FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKL 339
F+ +L+ C H G V +G+ YF M ++F + ++ CMV+LLG +GLL EA++L
Sbjct: 487 DEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEEL 546
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
I MP + ++WGAL AC H N + E LL LD
Sbjct: 547 IKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLD 586
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 147/325 (45%), Gaps = 64/325 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG V K F + + +D + KCG +++ +F W
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQP---------LVSKKVFDW------------ 2184
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLE 192
M E+D +SWN+MI++ + G E L F + H G +++ + A A L
Sbjct: 2185 -MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 2243
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H +V+ M+ +V VG+ +IDMY KCG + A
Sbjct: 2244 AGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCG----------------------RVEMAK 2281
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSG 299
F+ M +N+ SW +++ + G ++ F+ FVS+L+ CSH+G
Sbjct: 2282 KTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAG 2341
Query: 300 PVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
V +G H+F AM K Y ++ CMVDL G +G L EA LI M KP V+WG+
Sbjct: 2342 LVEEGWHWFNAM-KHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 2400
Query: 355 LLGACCSHYNTKLAELVMRNLLQLD 379
LLGAC H N L E+ + L +LD
Sbjct: 2401 LLGACRIHKNVDLGEIAAQKLFELD 2425
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 126/310 (40%), Gaps = 48/310 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +I + +HG + K+ F D + + ID + KCG +A F +M ++ W
Sbjct: 135 CTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSW 194
Query: 122 KFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I L+ +F ++P +++VSW MI+ R+ E L F +
Sbjct: 195 TTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIF 254
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + A + L G +H + + V++G+ LIDMY KCG I+ +I
Sbjct: 255 PNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCG--SIKDAI 312
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
++ FE M R+++ +W +I++ G+ ++ F
Sbjct: 313 EV--------------------FETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERV 352
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGE 335
F+ +L C H V +G YFT M + ++ CM +L S L E
Sbjct: 353 NVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDE 412
Query: 336 AKKLIDEMPS 345
A K E+ S
Sbjct: 413 AFKSTKEVGS 422
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 123/327 (37%), Gaps = 60/327 (18%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
N K +H + + +D+ + + I ++ G + YA F ++ NP F
Sbjct: 39 NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTF------- 91
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+WN +I T +G + L + + G + A
Sbjct: 92 ---------------TWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACT 136
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-------------CNGIESSIQ 233
+ ++ G +H ++ S DVFV + LID Y KCG + S
Sbjct: 137 NFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTT 196
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+ L++ G Q+A F+ + +N++SW +I+ + + E+ F
Sbjct: 197 VISGLISC----GDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN 252
Query: 287 ------FFVSLLSGCSHSGPVT--KGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAK 337
VSL+ C+ G +T +G H + Y ++D+ G + +A
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAI 312
Query: 338 KLIDEMPSK--PTCVIWGALLGACCSH 362
++ + MP K PT W +++ + H
Sbjct: 313 EVFETMPRKSLPT---WNSMITSLGVH 336
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 126/322 (39%), Gaps = 62/322 (19%)
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
F F +D ++ + IDM+ KCG + A + +F ++P R++
Sbjct: 2044 FGFETDLFVSSALIDMYSKCGQLKDARA----------------------LFDEIPLRNV 2081
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSW +MI+ G+ + N + +L+ V D P
Sbjct: 2082 VSWTSMIT-----GY----------VQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVV 2126
Query: 201 VVHMEPSLDVFVGSGLID----MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+V + + G G+ + +K G +G SI +G L+ YA+ G + F+
Sbjct: 2127 MVSVLSACSRVSGKGITEGVHGFVVKKGFDG---SIGVGNTLMDAYAKCGQPLVSKKVFD 2183
Query: 257 LMSRRNMISWMVLISAFSQAGVL-EKPRFFFFFV-------------SLLSGCSHSGPVT 302
M ++ ISW +I+ ++Q+G+ E F V ++L C+H+G +
Sbjct: 2184 WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 2243
Query: 303 KGK--HYFTAMAKFTYT-CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
GK H Y C ++D+ G + AKK D M K W A++
Sbjct: 2244 AGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK-NVKSWTAMVAGY 2302
Query: 360 CSHYNTKLAELVMRNLLQLDVK 381
H K A + +++ VK
Sbjct: 2303 GMHGRAKEALDIFYKMVRAGVK 2324
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 99/250 (39%), Gaps = 47/250 (18%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
++ + + ++ SWN++I+ L R G E L F L G + + + +++ DL
Sbjct: 1972 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 2031
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
G H + D+FV S LIDMY KCG ++ +AL
Sbjct: 2032 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG------QLKDARAL------------- 2072
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------------FFVS 290
F+ + RN++SW +I+ + Q + F VS
Sbjct: 2073 ---FDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVS 2129
Query: 291 LLSGCSH-SGP-VTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+LS CS SG +T+G H F F + ++D G +KK+ D M K
Sbjct: 2130 VLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKD 2189
Query: 348 TCVIWGALLG 357
+ W +++
Sbjct: 2190 D-ISWNSMIA 2198
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 27/167 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G ++ +H V K + + S IDM+ KCG V+ A+ F R
Sbjct: 2236 CAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDR--------- 2286
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
M E+++ SW M++ HG E L F ++ G + + + +
Sbjct: 2287 -------------MKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSV 2333
Query: 182 FSARASVYDLEWGPHLHSRVVH---MEPSLDVFVGSGLIDMYLKCGC 225
+A + +E G H + + H +EP ++ + ++D++ + GC
Sbjct: 2334 LAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY--GCMVDLFGRAGC 2378
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 66/225 (29%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LIDDDYR---------VFCDIGPRYL 49
+KAC + S+ + + +H LI +F+Q LID ++ VF + R +
Sbjct: 132 IKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNV 191
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ T+I+G + C G+++ A + + VS ++ I+ +++ + A
Sbjct: 192 VSWTTVISGLISC---GDLQEARRIFDEIPSKNVVSWTAM----INGYIRNQQPEEALEL 244
Query: 110 FLRMLNPSLF------------CWKFGIIRL----------------------------- 128
F RM ++F C + GI+ L
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSK 304
Query: 129 -------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
+ +F+ MP + L +WN+MI+ L HG G E L F E+
Sbjct: 305 CGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEM 349
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 174/396 (43%), Gaps = 88/396 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+KAC S+ +L ++IHA +I S I+ T N+++N
Sbjct: 125 LKACSSMSALEETQQIHAHIIKMGFGSEIY--------------------TTNSLLNVYS 164
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
+ G+IK A L V + VS S+ ID + KCG ++ A
Sbjct: 165 KS---GDIKSARLLFDQVDQRDTVSWNSM----IDGYTKCGEIEMAYE------------ 205
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+F MPER+++SW +MIS G E L F + G L ++ +
Sbjct: 206 ----------IFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVS 255
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A A + L+ G +H+ + E +D +G LIDMY KCG +E +I++
Sbjct: 256 TLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCG--DLEEAIEV------ 307
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
F M + + W +IS ++ G + +F
Sbjct: 308 --------------FRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMT 353
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
F +L+ CSH+G V + K F +M + ++ CMVDLLG +GLL EA++LI+ M
Sbjct: 354 FTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENM 413
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P KP IWGALL AC H N +L + + + L+Q+D
Sbjct: 414 PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 128/331 (38%), Gaps = 57/331 (17%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM--HVKCGAVDYAESAFLRMLNPSL 118
RC N++ +HG + K + DE A + G++ YA + F R+ P+
Sbjct: 27 RC---SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
F WNTMI + E L + + H ++ +
Sbjct: 84 FM----------------------WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI----QI 234
A +S+ LE +H+ ++ M +++ + L+++Y K G I+S+ Q+
Sbjct: 122 PFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSG--DIKSARLLFDQV 179
Query: 235 GK-------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
+ +++ Y + G + A F M RN+ISW +IS AG ++ F
Sbjct: 180 DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFH 239
Query: 288 -------------FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSG 331
VS L C+ G + +GK H + + C ++D+ G
Sbjct: 240 RMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCG 299
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
L EA ++ +M K V W A++ H
Sbjct: 300 DLEEAIEVFRKMEEKGVSV-WTAMISGYAIH 329
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 147/325 (45%), Gaps = 64/325 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG V K F + + +D + KCG +++ +F W
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQP---------LVSKKVFDW------------ 1311
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLE 192
M E+D +SWN+MI++ + G E L F + H G +++ + A A L
Sbjct: 1312 -MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 1370
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H +V+ M+ +V VG+ +IDMY KCG + A
Sbjct: 1371 AGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCG----------------------RVEMAK 1408
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSG 299
F+ M +N+ SW +++ + G ++ F+ FVS+L+ CSH+G
Sbjct: 1409 KTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAG 1468
Query: 300 PVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
V +G H+F AM K Y ++ CMVDL G +G L EA LI M KP V+WG+
Sbjct: 1469 LVEEGWHWFNAM-KHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 1527
Query: 355 LLGACCSHYNTKLAELVMRNLLQLD 379
LLGAC H N L E+ + L +LD
Sbjct: 1528 LLGACRIHKNVDLGEIAAQKLFELD 1552
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 131/322 (40%), Gaps = 51/322 (15%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +I C +I + +HG + K+ F D + + ID + KCG +A
Sbjct: 126 FTFPFVIKA---CTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKV 182
Query: 110 FLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETL 160
F +M ++ W I L+ +F ++P +++VSW MI+ R+ E L
Sbjct: 183 FEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEAL 242
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F + + + A + L G +H + + V++G+ LIDMY
Sbjct: 243 ELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMY 302
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KCG I+ +I++ FE M R+++ +W +I++ G+ +
Sbjct: 303 SKCG--SIKDAIEV--------------------FETMPRKSLPTWNSMITSLGVHGLGQ 340
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCM 323
+ F F+ +L C H V +G YFT M + ++ CM
Sbjct: 341 EALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECM 400
Query: 324 VDLLGLSGLLGEAKKLIDEMPS 345
+L S L EA K E+ S
Sbjct: 401 TELYARSNNLDEAFKSTKEVGS 422
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 123/327 (37%), Gaps = 60/327 (18%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
N K +H + + +D+ + + I ++ G + YA F ++ NP F
Sbjct: 39 NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTF------- 91
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+WN +I T +G + L + + G + A
Sbjct: 92 ---------------TWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACT 136
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-------------CNGIESSIQ 233
+ ++ G +H ++ S DVFV + LID Y KCG + S
Sbjct: 137 NFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTT 196
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+ L++ G Q+A F+ + +N++SW +I+ + + E+ F
Sbjct: 197 VISGLISC----GDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN 252
Query: 287 ------FFVSLLSGCSHSGPVT--KGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAK 337
VSL+ C+ G +T +G H + Y ++D+ G + +A
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAI 312
Query: 338 KLIDEMPSK--PTCVIWGALLGACCSH 362
++ + MP K PT W +++ + H
Sbjct: 313 EVFETMPRKSLPT---WNSMITSLGVH 336
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 125/326 (38%), Gaps = 70/326 (21%)
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
F F +D ++ + IDM+ KCG + A + +F ++P R++
Sbjct: 1171 FGFETDLFVSSALIDMYSKCGQLKDARA----------------------LFDEIPLRNV 1208
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWN--------HGFGLSSMLYATAFSARASVYDLE 192
VSW +MI+ ++ L F + + L S++ + SA + V
Sbjct: 1209 VSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKG 1268
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
+H VV + VG+ L+D Y KC G+ LV+
Sbjct: 1269 ITEGVHGFVVKKGFDGSIGVGNTLMDAYAKC-----------GQPLVSKK---------- 1307
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVL-EKPRFFFFFV-------------SLLSGCSHS 298
F+ M ++ ISW +I+ ++Q+G+ E F V ++L C+H+
Sbjct: 1308 -VFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHA 1366
Query: 299 GPVTKGK--HYFTAMAKFTYT-CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G + GK H Y C ++D+ G + AKK D M K W A+
Sbjct: 1367 GALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK-NVKSWTAM 1425
Query: 356 LGACCSHYNTKLAELVMRNLLQLDVK 381
+ H K A + +++ VK
Sbjct: 1426 VAGYGMHGRAKEALDIFYKMVRAGVK 1451
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 99/250 (39%), Gaps = 47/250 (18%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
++ + + ++ SWN++I+ L R G E L F L G + + + +++ DL
Sbjct: 1099 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 1158
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
G H + D+FV S LIDMY KCG ++ +AL
Sbjct: 1159 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG------QLKDARAL------------- 1199
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------------FFVS 290
F+ + RN++SW +I+ + Q + F VS
Sbjct: 1200 ---FDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVS 1256
Query: 291 LLSGCSH-SGP-VTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+LS CS SG +T+G H F F + ++D G +KK+ D M K
Sbjct: 1257 VLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKD 1316
Query: 348 TCVIWGALLG 357
+ W +++
Sbjct: 1317 D-ISWNSMIA 1325
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 27/167 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G ++ +H V K + + S IDM+ KCG V+ A+ F R
Sbjct: 1363 CAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDR--------- 1413
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
M E+++ SW M++ HG E L F ++ G + + + +
Sbjct: 1414 -------------MKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSV 1460
Query: 182 FSARASVYDLEWGPHLHSRVVH---MEPSLDVFVGSGLIDMYLKCGC 225
+A + +E G H + + H +EP ++ + ++D++ + GC
Sbjct: 1461 LAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY--GCMVDLFGRAGC 1505
>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
Length = 839
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 135/279 (48%), Gaps = 41/279 (14%)
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
F K I + + +F MPE+D ++W MIS +G+ E LC F ++ +S +
Sbjct: 382 FSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTF 441
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
++ SA AS+ DL G +H RVV M D+ V + L+ MY KC
Sbjct: 442 SSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKC--------------- 486
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
G+T A F +S N++S+ +IS +S G +K F
Sbjct: 487 -------GNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLI 340
F++LLS C H G V G YF +M K +Y ++ CMVDLLG SGLL +A LI
Sbjct: 540 VTFLALLSACVHVGYVDLGWKYFKSM-KSSYNIEPGPDHYACMVDLLGRSGLLDDASNLI 598
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP KP +WG+LL A +H LAEL + L++L+
Sbjct: 599 STMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELE 637
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 123/332 (37%), Gaps = 49/332 (14%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVK-KFYFVSDESIAKSSIDM 96
Y +FCDI + +Y TMI G VR G A L+ KF D + +
Sbjct: 133 YELFCDIPEKNAVSYATMITGFVRA---GRFDEAEFLYAETPVKF---RDSVASNVLLSG 186
Query: 97 HVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+++ G + A F M + +C I+ +F +M ER++++W MI
Sbjct: 187 YLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMI 246
Query: 148 SILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
+ GF + F+ + G ++S A F A G +H V M
Sbjct: 247 DGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPL 306
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
D+F +G +L++MY++ G +A F +M ++ +SW
Sbjct: 307 EFDLF----------------------LGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSW 344
Query: 267 MVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317
LI+ Q + + F + ++ G S G ++K F M +
Sbjct: 345 NSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
+ M+ +G EA +M K C
Sbjct: 405 TW-TAMISAFVSNGYYEEALCWFHKMLQKEVC 435
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLV 141
S I H + G + AE+ F +M N S+ W + + +F +MP R
Sbjct: 54 NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113
Query: 142 SWNTMISILTRH----GFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASVYDLEWGP 195
S+N MI+ + ++ G +E C E +++ YAT + RA +D
Sbjct: 114 SYNAMITAMIKNKCDLGKAYELFCDIPE-------KNAVSYATMITGFVRAGRFD----- 161
Query: 196 HLHSRVVHMEPSL---DVFVGSGLIDMYLKCGCNGIESSIQIGKA---------LVTMYA 243
+ ++ E + D + L+ YL+ G + G A +V Y
Sbjct: 162 --EAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYC 219
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+ G A F+ M+ RN+I+W +I + +AG E
Sbjct: 220 KMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFE 256
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 44/164 (26%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
L +HG V K V+D S+ S + M+ KCG + A
Sbjct: 457 GLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYK---------------------- 494
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG---FGLSSMLYATA------ 181
+F + E ++VS+NTMIS + +GFG + L F L + G G++ + +A
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554
Query: 182 -------FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
F + S Y++E GP H +D+ SGL+D
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPD------HYACMVDLLGRSGLLD 592
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298
++ +A G+ Q+A+ F MS R+++SW+ +ISA+++ G + K F + + S++
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYN 116
Query: 299 GPVTK--------GKHY--FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+T GK Y F + + Y M+ +G EA+ L E P K
Sbjct: 117 AMITAMIKNKCDLGKAYELFCDIPEKNAVSY-ATMITGFVRAGRFDEAEFLYAETPVK 173
>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g53600, mitochondrial; Flags: Precursor
gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 717
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 135/279 (48%), Gaps = 41/279 (14%)
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
F K I + + +F MPE+D ++W MIS +G+ E LC F ++ +S +
Sbjct: 382 FSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTF 441
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
++ SA AS+ DL G +H RVV M D+ V + L+ MY KC
Sbjct: 442 SSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKC--------------- 486
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
G+T A F +S N++S+ +IS +S G +K F
Sbjct: 487 -------GNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLI 340
F++LLS C H G V G YF +M K +Y ++ CMVDLLG SGLL +A LI
Sbjct: 540 VTFLALLSACVHVGYVDLGWKYFKSM-KSSYNIEPGPDHYACMVDLLGRSGLLDDASNLI 598
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP KP +WG+LL A +H LAEL + L++L+
Sbjct: 599 STMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELE 637
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 123/332 (37%), Gaps = 49/332 (14%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVK-KFYFVSDESIAKSSIDM 96
Y +FCDI + +Y TMI G VR G A L+ KF D + +
Sbjct: 133 YELFCDIPEKNAVSYATMITGFVRA---GRFDEAEFLYAETPVKF---RDSVASNVLLSG 186
Query: 97 HVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+++ G + A F M + +C I+ +F +M ER++++W MI
Sbjct: 187 YLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMI 246
Query: 148 SILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
+ GF + F+ + G ++S A F A G +H V M
Sbjct: 247 DGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPL 306
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
D+F +G +L++MY++ G +A F +M ++ +SW
Sbjct: 307 EFDLF----------------------LGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSW 344
Query: 267 MVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317
LI+ Q + + F + ++ G S G ++K F M +
Sbjct: 345 NSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
+ M+ +G EA +M K C
Sbjct: 405 TW-TAMISAFVSNGYYEEALCWFHKMLQKEVC 435
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLV 141
S I H + G + AE+ F +M N S+ W + + +F +MP R
Sbjct: 54 NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113
Query: 142 SWNTMISILTRH----GFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASVYDLEWGP 195
S+N MI+ + ++ G +E C E +++ YAT + RA +D
Sbjct: 114 SYNAMITAMIKNKCDLGKAYELFCDIPE-------KNAVSYATMITGFVRAGRFD----- 161
Query: 196 HLHSRVVHMEPSL---DVFVGSGLIDMYLKCGCNGIESSIQIGKA---------LVTMYA 243
+ ++ E + D + L+ YL+ G + G A +V Y
Sbjct: 162 --EAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYC 219
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+ G A F+ M+ RN+I+W +I + +AG E
Sbjct: 220 KMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFE 256
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 44/164 (26%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
L +HG V K V+D S+ S + M+ KCG + A
Sbjct: 457 GLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYK---------------------- 494
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG---FGLSSMLYATA------ 181
+F + E ++VS+NTMIS + +GFG + L F L + G G++ + +A
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554
Query: 182 -------FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
F + S Y++E GP H +D+ SGL+D
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPD------HYACMVDLLGRSGLLD 592
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298
++ +A G+ Q+A+ F MS R+++SW+ +ISA+++ G + K F + + S++
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYN 116
Query: 299 GPVTK--------GKHY--FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+T GK Y F + + Y M+ +G EA+ L E P K
Sbjct: 117 AMITAMIKNKCDLGKAYELFCDIPEKNAVSY-ATMITGFVRAGRFDEAEFLYAETPVK 173
>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 122/454 (26%), Positives = 191/454 (42%), Gaps = 103/454 (22%)
Query: 8 KSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPR------------------YL 49
K L I +KIHAQLI++ ++S+ L+ + F GP Y+
Sbjct: 20 KKLKIFKKIHAQLITSGVVSN---DLVVNRAAEFFAKGPNFADYACDFLSQMEDGFLPYM 76
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ ++ + + V + +HG++ K FV D + S + + CG++D A
Sbjct: 77 FTFPAVLKSCAKFMAVDEGR---QVHGVIAKMDFVCDIYVENSLVHFYSVCGSLDDASRV 133
Query: 110 FLRMLNPSLFCWK--------------FGIIRLLI------------------------- 130
F ML W GI L+I
Sbjct: 134 FDEMLVRDAVSWTGVIYPGIKGYLILGKGIHGLIIERGFGLGLEVSNALMDMYVKCESLP 193
Query: 131 ----MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F ++PE+D+VSW ++I + + F E L F ++ + G ++ + SARA
Sbjct: 194 EEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEPDGIILTSVLSARA 253
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-----------G 235
S L++G + + H D+ +G+ ++DMY KCGC IE ++QI
Sbjct: 254 SPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGC--IEMAMQIFNVMPHKNVLTW 311
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGC 295
A++ A G QKA FE M R M +P F V+ L+ C
Sbjct: 312 NAMLNGLAMHGHGQKALQLFEEMVREGM-----------------RPNEVTFLVT-LTAC 353
Query: 296 SHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
H G V +G+ YF M Y ++ CMVDLL +GLL EA +L MP P
Sbjct: 354 CHCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKAMPMLPDVR 413
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
I GALL C ++ N +L ++ L++ D + G
Sbjct: 414 IMGALLSTCKANGNVELPREILDRLVEFDSRDSG 447
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/455 (24%), Positives = 193/455 (42%), Gaps = 92/455 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KA + SL + + +H I + + S +F+ +D +VF I + +
Sbjct: 140 IKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 199
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++N+MING V+ C + +++ +
Sbjct: 200 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSY 259
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI------- 130
+++ + ++A + +DM+ KCG+++ A+ F M W + I
Sbjct: 260 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 319
Query: 131 --MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAFSARAS 187
+ MP++D+V+WN +IS ++G E L F EL L+ + + SA A
Sbjct: 320 REVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQ 379
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
V LE G +HS Y+K NGI+ + + AL+ MY++ G
Sbjct: 380 VGALELGRWIHS--------------------YIKK--NGIKMNFYVTSALIHMYSKCGD 417
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
+KA F + +R++ W +I + G + F+ F ++
Sbjct: 418 LEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCA 477
Query: 295 CSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CSH+G V + + F M ++ C+VD+LG SG L +A K I+ MP P+
Sbjct: 478 CSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS 537
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+WGALLGAC H N LAE+ LL+L+ + G+
Sbjct: 538 VWGALLGACKIHANLSLAEMACTRLLELEPRNDGA 572
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 106/271 (39%), Gaps = 47/271 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCT---FIELWNHGFGLSSMLYATAF--SAR 185
+F ++P+ + +WNT+I + G + +C+ F+++ + Y F A
Sbjct: 87 VFDEIPQPNSFTWNTLIRA---YASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAA 143
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A V L G LH + DVFV + LI Y CG ++S+ ++
Sbjct: 144 AEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCG--DLDSACKV----------- 190
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
F + ++++SW +I+ F Q G +K F V +L
Sbjct: 191 ---------FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 241
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
S C+ + G+ + + + M+D+ G + +AK+L D M K
Sbjct: 242 SACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN- 300
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
V W +L + + A V+ + + D+
Sbjct: 301 VTWTTMLDGYAISEDYEAAREVLNAMPKKDI 331
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 156/337 (46%), Gaps = 48/337 (14%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+ M +H L K S ++ + I M+ KCG + A F L W I
Sbjct: 257 VNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISG 316
Query: 128 LL---------IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
L +F MPE+D+VSW++MIS ++ ETL F E+ GF
Sbjct: 317 YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTL 376
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
+ SA A + LE G +H+ + +++V +G+ LIDMY+KCGC +E+++++
Sbjct: 377 VSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGC--VETALEV---- 430
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
F M + + +W LI + G++E F
Sbjct: 431 ----------------FYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNE 474
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLID 341
F+ +L C H G V +G+H+F +M ++ CMVDLLG +G L EA++L++
Sbjct: 475 ITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 534
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
MP P WGALLGAC H ++++ V R L++L
Sbjct: 535 RMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIEL 571
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/345 (19%), Positives = 144/345 (41%), Gaps = 76/345 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYL 49
++AC +S A+++H ++ S ++++ LI+ D RVF +
Sbjct: 85 IQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDS 144
Query: 50 FTYNTMINGGVRCLCVGNIKMALHL-HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
++N+++ G + +GN++ A H+ H + ++ S+ I
Sbjct: 145 VSWNSILAGYIE---IGNVEEAKHIYHQMPERSIIASNSMIV------------------ 183
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
LF + ++ +F +M E+D+V+W+ +I+ ++ E + TF+ +
Sbjct: 184 ---------LFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHK 234
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
G + ++ +A SA A++ + G +HS + + + + + LI MY KCG
Sbjct: 235 IGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG---- 290
Query: 229 ESSIQIGKAL---------------VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
I + + L ++ Y + A F+ M ++++SW +IS +
Sbjct: 291 --DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGY 348
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK 305
+Q + ++ F VS++S C+ + +GK
Sbjct: 349 AQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK 393
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 139/312 (44%), Gaps = 49/312 (15%)
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLV 141
S I + G V A+ F R+L P+ FC + +F++MPERDLV
Sbjct: 81 NSMIHGYAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLV 140
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
SWN MIS + E LC F + GF + + SA LE G +H V
Sbjct: 141 SWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFV 200
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
D F+G+ L+DMY KCG +E ++++ F + R
Sbjct: 201 EKKRLRWDEFLGTALVDMYAKCG--AVELALEV--------------------FTGLRAR 238
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGK-H 306
N +W +I+ + G K F FV +L CSH+G V GK H
Sbjct: 239 NTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEH 298
Query: 307 YFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
++T K+ ++ CMVDLL SG L EA KLI EMP KP V+W ALLG C H
Sbjct: 299 FYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHK 358
Query: 364 NTKLAELVMRNL 375
N K+AE V+ +
Sbjct: 359 NVKMAENVISEM 370
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 54/165 (32%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGV--------------------------------R 61
++ RVF ++ R L ++N MI+G V
Sbjct: 124 VESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSA 183
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G ++ +H V+K DE + + +DM+ KCGAV+ A
Sbjct: 184 CTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELA--------------- 228
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
L +F + R+ +WN MI+ L +G+ + L F ++
Sbjct: 229 -------LEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQM 266
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 186/448 (41%), Gaps = 110/448 (24%)
Query: 1 MKACGSLKSLPI-ARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDI--GP 46
+K+C +L SLPI + H Q+ + F+Q L+D+ +VF +
Sbjct: 56 LKSCAAL-SLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSR 114
Query: 47 RYLFTYNTMINGGVR--------------------------------CLCVGNIKMALHL 74
+ YN +++G V C+ N+++ L
Sbjct: 115 KLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSL 174
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H K+ F SD S+ I M++KCG+V+YA+ +F +
Sbjct: 175 HCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQK----------------------LFDE 212
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP + L+SWN M+S ++G L + + +G + S+ A++ G
Sbjct: 213 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG 272
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+ ++ + + F+ + LI+MY +C G+ KA
Sbjct: 273 HEVEFKIQASGFTSNPFLNNALINMYARC----------------------GNLTKAQAV 310
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
F+ M R ++SW +I + G E F FV +LS CSH+G
Sbjct: 311 FDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLT 370
Query: 302 TKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+G YF M K Y ++ CMVDLLG +G L EA+ LI+ MP KP +WGALL
Sbjct: 371 DQGLEYFK-MMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALL 429
Query: 357 GACCSHYNTKLAELVMRNLLQLDVKVFG 384
GAC H N +LAEL +++L+ + G
Sbjct: 430 GACKIHKNVELAELAFERVIELEPENIG 457
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 126/330 (38%), Gaps = 61/330 (18%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
HG + K V + + I M+ K VD A F
Sbjct: 70 QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFE--------------------- 108
Query: 133 QKMPERDL-VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
+ R L V +N ++S + E + F ++ G ++S+ A S +L
Sbjct: 109 ENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINL 168
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
E G LH + DV V + I MY+KC GS A
Sbjct: 169 ELGSSLHCSTLKYGFDSDVSVVNCFITMYMKC----------------------GSVNYA 206
Query: 252 DLAFELMSRRNMISWMVLISAFSQAG----VLEKPRFF---------FFFVSLLSGCSHS 298
F+ M + +ISW ++S ++Q G VLE R V +LS C++
Sbjct: 207 QKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANL 266
Query: 299 GPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G + G + + FT + ++++ G L +A+ + D MP + T V W A+
Sbjct: 267 GAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPER-TLVSWTAI 325
Query: 356 LGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+G H + ++A + + +++ ++ G+
Sbjct: 326 IGGYGMHGHGEIAVQLFKEMIRSGIEPDGT 355
>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
Length = 993
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 168/369 (45%), Gaps = 65/369 (17%)
Query: 31 LQLIDDDYRVF-----CDIGPRYLFTYNTMINGGVRCLCVGNI-KMALHLHGLVKKFYFV 84
L+ + + RVF I P Y+ TMIN C +G++ + LH V + +
Sbjct: 427 LEDVANAMRVFSWMRGTGIKPNYI----TMINLQGTCKSLGDLHSYGMPLHAYVTQTGLL 482
Query: 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144
SDE I S I M+ CG ++ + F R+ N S+ +SWN
Sbjct: 483 SDEYITNSLITMYATCGDLESSTGIFSRINNKSV----------------------ISWN 520
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
+I+ RHG G E + F++ + G L A S+ A++ LE G LH V
Sbjct: 521 AIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKN 580
Query: 205 EPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
D V + +DMY KCG + Q L++ YA G ++A+ F
Sbjct: 581 GLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTF 640
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315
++M+S V +KP + F V+LLS CSH+G + KG Y+ +MA T
Sbjct: 641 -----KHMVS------------VGQKPDYVTF-VALLSACSHAGLIDKGMDYYNSMAP-T 681
Query: 316 YTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
+ + VC+VDLLG G EA+K IDEMP P +IW +LL + +H N +
Sbjct: 682 FGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRK 741
Query: 371 VMRNLLQLD 379
+NLL+LD
Sbjct: 742 AAKNLLELD 750
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 42/192 (21%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M ERD +SWN MIS +++H +Y+ F + +
Sbjct: 202 LFDRMEERDRISWNAMIS-----------------MYSH-----EEVYSKCFIVLSDMRH 239
Query: 191 LEWGPHLHS--RVVHMEPSLD-VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
E P + + +V + S D V +GSG+ + C +G+ S+ + ALV MY+ G
Sbjct: 240 GEVKPDVTTLCSLVSVCASSDLVALGSGIHSL---CVSSGLHCSVPLINALVNMYSTAGK 296
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAG--------------VLEKPRFFFFFVSLLS 293
+A+ F MSRR++ISW +IS++ Q+ E P F S L
Sbjct: 297 LDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALG 356
Query: 294 GCSHSGPVTKGK 305
CS + G+
Sbjct: 357 ACSSPEALMNGR 368
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 103/265 (38%), Gaps = 39/265 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP+R++VSW ++ L+ +G E L + + G ++ AT S ++ D
Sbjct: 101 LFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALED 160
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G + + VV +G+ + + + +L+TM+ Q
Sbjct: 161 EVAGLQVTAHVV----------------------VSGLLTHVSVANSLITMFGNLRRVQD 198
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSGCSH 297
A+ F+ M R+ ISW +IS +S V K SL+S C+
Sbjct: 199 AERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCAS 258
Query: 298 SGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
S V G + C +V++ +G L EA+ L M S+ + W
Sbjct: 259 SDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNM-SRRDVISWNT 317
Query: 355 LLGACCSHYNTKLAELVMRNLLQLD 379
++ + + A + LLQ D
Sbjct: 318 MISSYVQSNSCVEALETLGQLLQTD 342
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 120/305 (39%), Gaps = 68/305 (22%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIF-----------LQLIDDDYRVFCDIGPRYLFTY 52
CG+L+ ++ A ++ + L++ + L+ + D R+F + R ++
Sbjct: 155 CGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISW 214
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
N MI+ M H K F +SD + D+ C V S+ L
Sbjct: 215 NAMIS------------MYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLV 262
Query: 113 MLNPSL--FCWKFGI------IRLLI--------------MFQKMPERDLVSWNTMISIL 150
L + C G+ I L+ +F+ M RD++SWNTMIS
Sbjct: 263 ALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSY 322
Query: 151 TRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ E L T +L G +SM +++A A +S L G +H+ ++
Sbjct: 323 VQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQ------ 376
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
+++ + IG +L+TMY++ S + + FE M +++S VL
Sbjct: 377 ----------------RSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVL 420
Query: 270 ISAFS 274
++
Sbjct: 421 TGGYA 425
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 163/359 (45%), Gaps = 53/359 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD---YA 106
FTY+ +I G R ++ +HG V + ++ + S ++++ G D A
Sbjct: 133 FTYSFLIGGCARSXL---LREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKA 189
Query: 107 ESAFLRMLNPSLFCWK---FGIIR------LLIMFQKMPERDLVSWNTMISILTRHGFGF 157
F +++ ++ W G +R +F +MPER++VSW TMI+ + G
Sbjct: 190 RRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCK 249
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
+ L F E+ G L + A SA A + DL+ G +HS I
Sbjct: 250 QALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHS----------------YI 293
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
D L G + + + +L+ MYA G KA F M +R+ ISW +I+ F++ G
Sbjct: 294 DERLHAGNQPL--LVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQG 351
Query: 278 VLEKPRFFF----------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYT 317
E+ F F+ +L CSH+G V +G+H+F M K
Sbjct: 352 HAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRI 411
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CMVDLL +G L EA +L + MP KP +WGALLG C H N +LA V + L+
Sbjct: 412 EHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLV 470
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 61/332 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+ ++ M +HG + + SDE + S +DM+ KCG+++ A
Sbjct: 264 IPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEAR----------------- 306
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F KM ERD+VSW TMI ++G E F L N + +A +A
Sbjct: 307 -----YIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNA 361
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A + + G +H+ +V + G +S ALV MY++
Sbjct: 362 CADLAAEDLGKQIHAYMVRV----------------------GFDSFSSAASALVHMYSK 399
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
G + A FE++ + ++ SW L+ ++Q G +K FF F+ +
Sbjct: 400 CGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGV 459
Query: 292 LSGCSHSGPVTKGKHYFTAMAK---FTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LS C+H+G V KG YF ++ + T T ++ C++DLL +G EA+ +I+EMP KP
Sbjct: 460 LSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKP 519
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
IW ALLG C H N +LA+ ++L +++
Sbjct: 520 DKYIWAALLGGCRIHGNLELAKRAAKSLFEIE 551
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 121/301 (40%), Gaps = 51/301 (16%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII---------RLLIMFQKMPERD 139
I+ +DM+ KCG++ AE F M++ L W I + +F KMP RD
Sbjct: 155 ISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRD 214
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM-LYATAFSARASVYDLEWGPHLH 198
SW +IS +H E L + + H + S+ ++A +A A++ L G +H
Sbjct: 215 NFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIH 274
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
++ M D V L+DMY KC GS ++A F+ M
Sbjct: 275 GHIMRMGLDSDEVVWCSLLDMYGKC----------------------GSIEEARYIFDKM 312
Query: 259 SRRNMISWMVLISAFSQAGVLEK--------------PRFFFFFVSLLSGCSHSGPVTKG 304
R+++SW +I + + G E+ P F F +L+ C+ G
Sbjct: 313 EERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPN-DFTFAGVLNACADLAAEDLG 371
Query: 305 KHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K M + +++ +V + G + AK + + +P +P W +LL
Sbjct: 372 KQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLLVGYAQ 430
Query: 362 H 362
H
Sbjct: 431 H 431
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 109/455 (23%), Positives = 192/455 (42%), Gaps = 92/455 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KA + SL + + +H + + + S +F+ +D +VF I + +
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++N+MING V+ C + N++ +
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI------- 130
+++ + ++A + +DM+ KCG+++ A+ F M W + I
Sbjct: 258 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 317
Query: 131 --MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAFSARAS 187
+ MP++D+V+WN +IS ++G E L F EL L+ + + SA A
Sbjct: 318 REVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQ 377
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
V LE G +HS Y+K +GI + + AL+ MY++ G
Sbjct: 378 VGALELGRWIHS--------------------YIKK--HGIRMNFHVTSALIHMYSKCGD 415
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
+K+ F + +R++ W +I + G + F+ F ++
Sbjct: 416 LEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCA 475
Query: 295 CSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CSH+G V + + F M ++ C+VD+LG SG L +A K I+ MP P+
Sbjct: 476 CSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS 535
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+WGALLGAC H N LAE+ LL+L+ + G+
Sbjct: 536 VWGALLGACKIHANLNLAEMACTRLLELEPRNDGA 570
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 105/272 (38%), Gaps = 50/272 (18%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS------A 184
+F ++P+ + +WNT+I ++ F+++ + S Y ++ A
Sbjct: 86 VFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVS-----ESQCYPNKYTFPFLIKA 140
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A V L G LH V DVFV + LI Y CG ++S+ ++
Sbjct: 141 AAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCG--DLDSACKV---------- 188
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
F + ++++SW +I+ F Q G +K F V +
Sbjct: 189 ----------FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGV 238
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
LS C+ + G+ + + + M+D+ G + +AK+L D M K
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 298
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
V W +L + + A V+ ++ Q D+
Sbjct: 299 -VTWTTMLDGYAISEDYEAAREVLNSMPQKDI 329
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 134/271 (49%), Gaps = 39/271 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP++D VSW M++ ++ GF ETL F E+ G ++ +A S A +
Sbjct: 408 IFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAA 467
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G LHSR++ + FVG+ L+ MY KC GS ++
Sbjct: 468 LECGMQLHSRLIKAGYGVGCFVGNALLAMYFKC----------------------GSMEE 505
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A AFE M R+++SW +I+ +++ G ++ F V +L+ CSH
Sbjct: 506 AHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSH 565
Query: 298 SGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
SG V KG YF +M + T ++ CM+DLLG +G L EA L+ +MP +P +WG
Sbjct: 566 SGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWG 625
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALLGA H N++L + +L+ + G
Sbjct: 626 ALLGASRIHRNSELGRNAAEKIFELEPENAG 656
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 129/350 (36%), Gaps = 76/350 (21%)
Query: 67 NIKMALHL-HGLV---KKFYFVSDESIAKSSIDM---HVKCGAVDYAESAFLRMLNPSLF 119
N+ ++ H HGLV + ++ ++ E A S M +V+ G + A F
Sbjct: 204 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAI 263
Query: 120 CW---------KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF------- 163
W + I MF KMP+RD+VSWNTM+S R G E F
Sbjct: 264 SWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRD 323
Query: 164 IELWN---HGFGLSSMLYATA--FSARASVYDLEWGPHLHSRVVH--MEPSLDVFVGSGL 216
+ W G+ + ML F A + W + + V ME + ++F
Sbjct: 324 VFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDA--- 380
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
C + S ++T YA+ G +A F +M +++ +SW +++A+SQ
Sbjct: 381 ------MPCRNVAS----WNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQI 430
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY------- 316
G E+ F F +LS C+ + G + + K Y
Sbjct: 431 GFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVG 490
Query: 317 ----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
YF C G + EA +EM + V W ++ H
Sbjct: 491 NALLAMYFKC--------GSMEEAHSAFEEMEER-DVVSWNTMIAGYARH 531
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 113/269 (42%), Gaps = 47/269 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-------WN---HGFGLSSMLYAT 180
+F MP R ++NTM++ +G + L F + +N H G+SS L
Sbjct: 129 LFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADV 188
Query: 181 -----AFSARASV-YDLEWGPHLHSRVV-------HMEPSLDVFVGSGLIDMYLKCGCNG 227
+ SV Y++ H + +V + P D +G++ Y++ G
Sbjct: 189 RALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNG--R 246
Query: 228 IESSIQI-----------GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
I+ + ++ AL+ Y + ++A F M +R+++SW ++S +++
Sbjct: 247 IQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARR 306
Query: 277 GVL-EKPRFF--------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLL 327
G + E R F F + +++SG + +G + + K F AM + M +
Sbjct: 307 GDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYV 366
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
++ EAK+L D MP + W +L
Sbjct: 367 QRR-MMEEAKELFDAMPCR-NVASWNTML 393
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 32/107 (29%)
Query: 62 CLCVGNIKMALHLHG-LVKKFY----FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP 116
C + ++ + LH L+K Y FV + +A M+ KCG+++ A SA
Sbjct: 462 CADIAALECGMQLHSRLIKAGYGVGCFVGNALLA-----MYFKCGSMEEAHSA------- 509
Query: 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
F++M ERD+VSWNTMI+ RHGFG E L F
Sbjct: 510 ---------------FEEMEERDVVSWNTMIAGYARHGFGKEALEVF 541
>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
Length = 923
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 168/369 (45%), Gaps = 65/369 (17%)
Query: 31 LQLIDDDYRVF-----CDIGPRYLFTYNTMINGGVRCLCVGNI-KMALHLHGLVKKFYFV 84
L+ + + RVF I P Y+ TMIN C +G++ + LH V + +
Sbjct: 427 LEDVANAMRVFSWMRGTGIKPNYI----TMINLQGTCKSLGDLHSYGMPLHAYVTQTGLL 482
Query: 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144
SDE I S I M+ CG ++ + F R+ N S+ +SWN
Sbjct: 483 SDEYITNSLITMYATCGDLESSTGIFSRINNKSV----------------------ISWN 520
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
+I+ RHG G E + F++ + G L A S+ A++ LE G LH V
Sbjct: 521 AIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKN 580
Query: 205 EPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
D V + +DMY KCG + Q L++ YA G ++A+ F
Sbjct: 581 GLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTF 640
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315
++M+S V +KP + F V+LLS CSH+G + KG Y+ +MA T
Sbjct: 641 -----KHMVS------------VGQKPDYVTF-VALLSACSHAGLIDKGMDYYNSMAP-T 681
Query: 316 YTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
+ + VC+VDLLG G EA+K IDEMP P +IW +LL + +H N +
Sbjct: 682 FGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRK 741
Query: 371 VMRNLLQLD 379
+NLL+LD
Sbjct: 742 AAKNLLELD 750
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 42/192 (21%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M ERD +SWN MIS+ + +Y+ F + +
Sbjct: 202 LFDRMEERDRISWNAMISMYSHEE----------------------VYSKCFIVLSDMRH 239
Query: 191 LEWGPHLHS--RVVHMEPSLD-VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
E P + + +V + S D V +GSG+ + C +G+ S+ + ALV MY+ G
Sbjct: 240 GEVKPDVTTLCSLVSVCASSDLVALGSGIHSL---CVSSGLHCSVPLINALVNMYSTAGK 296
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAG--------------VLEKPRFFFFFVSLLS 293
+A+ F MSRR++ISW +IS++ Q+ E P F S L
Sbjct: 297 LDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALG 356
Query: 294 GCSHSGPVTKGK 305
CS + G+
Sbjct: 357 ACSSPEALMNGR 368
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 103/265 (38%), Gaps = 39/265 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP+R++VSW ++ L+ +G E L + + G ++ AT S ++ D
Sbjct: 101 LFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALED 160
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G + + VV +G+ + + + +L+TM+ Q
Sbjct: 161 EVAGLQVTAHVV----------------------VSGLLTHVSVANSLITMFGNLRRVQD 198
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSGCSH 297
A+ F+ M R+ ISW +IS +S V K SL+S C+
Sbjct: 199 AERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCAS 258
Query: 298 SGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
S V G + C +V++ +G L EA+ L M S+ + W
Sbjct: 259 SDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNM-SRRDVISWNT 317
Query: 355 LLGACCSHYNTKLAELVMRNLLQLD 379
++ + + A + LLQ D
Sbjct: 318 MISSYVQSNSCVEALETLGQLLQTD 342
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 120/305 (39%), Gaps = 68/305 (22%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIF-----------LQLIDDDYRVFCDIGPRYLFTY 52
CG+L+ ++ A ++ + L++ + L+ + D R+F + R ++
Sbjct: 155 CGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISW 214
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
N MI+ M H K F +SD + D+ C V S+ L
Sbjct: 215 NAMIS------------MYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLV 262
Query: 113 MLNPSL--FCWKFGI------IRLLI--------------MFQKMPERDLVSWNTMISIL 150
L + C G+ I L+ +F+ M RD++SWNTMIS
Sbjct: 263 ALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSY 322
Query: 151 TRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ E L T +L G +SM +++A A +S L G +H+ ++
Sbjct: 323 VQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQ------ 376
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
+++ + IG +L+TMY++ S + + FE M +++S VL
Sbjct: 377 ----------------RSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVL 420
Query: 270 ISAFS 274
++
Sbjct: 421 TGGYA 425
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
G+ ++ IG AL+ +Y G A F M +RN++SW ++ A S G +E+
Sbjct: 74 GLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEE 128
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 138/315 (43%), Gaps = 54/315 (17%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW-----------KFGIIRLLIMFQKMPERDLVS 142
IDM CG +D A F M + W + + R F +MPERD VS
Sbjct: 282 IDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKY--FDQMPERDYVS 339
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W MI R E L F ++ + +A A + LE G + +
Sbjct: 340 WTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYID 399
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+ D F+G+ LIDMY KC G+ +KA F M +++
Sbjct: 400 KNKIKNDTFIGNALIDMYFKC----------------------GNVEKAKKIFNEMQKKD 437
Query: 263 MISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFT 309
+W +I + G E+ F ++ ++ C+H G V KGKH+F+
Sbjct: 438 KFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFS 497
Query: 310 AMA-----KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
MA K T ++ CMVDLLG +G L EA ++I MP KP ++WG+LLGAC H N
Sbjct: 498 NMAVQHGIKPNLT-HYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKN 556
Query: 365 TKLAELVMRNLLQLD 379
+LAE+ +L+L+
Sbjct: 557 VQLAEMAANEILELE 571
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 99/430 (23%), Positives = 163/430 (37%), Gaps = 100/430 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISS-IFLQLI---------DDDY---RVFCDIGPR 47
++ C ++ + +IH+Q I T L S+ +FL + D Y +VF +I
Sbjct: 42 LETCNTMYEI---NQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQP 98
Query: 48 YLFTYNTMINGGVRCLCV--GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105
+F +NTMI G R C G L L +K F + + DM +K G V
Sbjct: 99 SVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLL 158
Query: 106 AESAFLRMLNPSLFCWKFGIIRLLIM----------FQKMPERDLVSWNTMISILTRHGF 155
+ L+ +LF K G I L + F ++V+WN ++S R
Sbjct: 159 NHAVIHGFLDSNLFVQK-GFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKR 217
Query: 156 GFETLCTFIELWNHGFGLS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
E+ FIE+ +S S+ SA + + DL G ++++
Sbjct: 218 YEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNK------------- 264
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
Y+K G +E ++ + AL+ M+A G A F+ M R++ISW +++ F
Sbjct: 265 ------YIKEGI--VEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGF 316
Query: 274 SQA--------------------------GVLEKPRF------------------FFFFV 289
+ G L RF F V
Sbjct: 317 ANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMV 376
Query: 290 SLLSGCSHSGPVTKG---KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
S+L+ C+H G + G K Y T ++D+ G + +AKK+ +EM K
Sbjct: 377 SILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKK 436
Query: 347 PTCVIWGALL 356
W A++
Sbjct: 437 DK-FTWTAMI 445
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 165/356 (46%), Gaps = 51/356 (14%)
Query: 52 YNTMINGGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+N GV LCV +++A +HG V F+S+ ++ S +D + KCG + A +
Sbjct: 193 FNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTL 252
Query: 110 FLRMLNPSLFCW--------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETL 160
F ML + W K+G + +F +MPE++ VSW+ +IS R+ G E L
Sbjct: 253 FDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEAL 312
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F ++ G +++ A AS+ L+ G +H ++ + V S LIDMY
Sbjct: 313 DYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMY 372
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM-SRRNMISWMVLISAFSQAGVL 279
KCG +E+S + F LM ++++++ W +ISA +Q G
Sbjct: 373 SKCGM--LEASCCV--------------------FHLMGNKQDVVVWNTMISALAQNGHG 410
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVC 322
EK F F+ +LS CSHSG V +G +F AM F ++ C
Sbjct: 411 EKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYAC 470
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
++DLLG +G E ++ M KP +W ALLG C H N +L V +++L
Sbjct: 471 LIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIEL 526
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 135/327 (41%), Gaps = 34/327 (10%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERD 139
+A I M+ +CG A F +M +L+ W K G + +F +M E+D
Sbjct: 100 VANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKD 159
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSWNT++ + G E + + + G ++ +A + +L+ +H
Sbjct: 160 VVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHG 219
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCG---C------NGIESSIQIGKALVTMYAEGGSTQK 250
+V+ ++ + S ++D Y KCG C + I +V+ YA+ G
Sbjct: 220 QVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNS 279
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A F M +N +SW LIS +++ + + +F F S L C+
Sbjct: 280 ASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACAS 339
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ GK + + + C + ++D+ G+L + + M +K V+W
Sbjct: 340 IAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNT 399
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVK 381
++ A + + + A + ++++ +K
Sbjct: 400 MISALAQNGHGEKAMQMFNDMVESGLK 426
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 158/343 (46%), Gaps = 48/343 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +K +HGLV + S ++ + I M+ G + A+ F N W
Sbjct: 314 CAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISW 373
Query: 122 KF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+ + +F MPE+D+VSW+ +IS +H ETL F E+
Sbjct: 374 NSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIR 433
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + SA + L+ G +H+ + ++V +G+ L+DMY+KCGC +E+++
Sbjct: 434 PDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGC--VENAL 491
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
++ F M + + SW LI + G++E+ F
Sbjct: 492 EV--------------------FNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNN 531
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
F+ +L C H G V +G+ +F +M + ++ CMVDLLG +GLL E
Sbjct: 532 GVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNE 591
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
A+KLI+ MP P WGALLGAC H +T++ E V R L++L
Sbjct: 592 AEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIEL 634
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 38/288 (13%)
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
++ NT+IN C GN++ A L VS SI +VK G V+ A+
Sbjct: 176 VYVQNTLINMYAVC---GNMRDARKLFDESPVLDSVSWNSILAG----YVKKGDVEEAKL 228
Query: 109 AFLRMLNPSLFCWKFGIIRLLIM---------FQKMPERDLVSWNTMISILTRHGFGFET 159
F +M ++ I+ L M F +M E+D+VSW+ +IS ++G E
Sbjct: 229 IFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEA 288
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
L FIE+ +G L ++ + SA A + ++ G +H V+ M V + + LI M
Sbjct: 289 LVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHM 348
Query: 220 YLKCGC--------NGIESSIQIG-KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
Y G NG + QI ++++ + GS +KA F++M ++++SW +I
Sbjct: 349 YSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVI 408
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK 305
S ++Q + F VS++S C+H + +GK
Sbjct: 409 SGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGK 456
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 120/313 (38%), Gaps = 64/313 (20%)
Query: 105 YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
+A S L+ S F G+ L +F ++ + WNTM+ + + L +
Sbjct: 74 FAASRLLKFSTDSPF---IGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYK 130
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWG-PHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
+ + G + Y A A V LE+G +H V+ + DV+V + LI+MY C
Sbjct: 131 LMVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVC 189
Query: 224 GC----------NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN----------- 262
G + + S+ +++ Y + G ++A L F+ M +RN
Sbjct: 190 GNMRDARKLFDESPVLDSVSW-NSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLL 248
Query: 263 --------------------MISWMVLISAFSQAGVLEKPRFFFF-------------FV 289
M+SW LIS + Q G+ E+ F V
Sbjct: 249 GKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVV 308
Query: 290 SLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
S+LS C+H V GK M +Y ++ + SG + +A+KL + +
Sbjct: 309 SVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNL 368
Query: 347 PTCVIWGALLGAC 359
+ W +++ C
Sbjct: 369 DQ-ISWNSMISGC 380
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 156/337 (46%), Gaps = 48/337 (14%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+ M +H L K S ++ + I M+ KCG + A F L W I
Sbjct: 392 VNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISG 451
Query: 128 LL---------IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
L +F MPE+D+VSW++MIS ++ ETL F E+ GF
Sbjct: 452 YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTL 511
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
+ SA A + LE G +H+ + +++V +G+ LIDMY+KCGC +E+++++
Sbjct: 512 VSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGC--VETALEV---- 565
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
F M + + +W LI + G++E F
Sbjct: 566 ----------------FYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNE 609
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLID 341
F+ +L C H G V +G+H+F +M ++ CMVDLLG +G L EA++L++
Sbjct: 610 ITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 669
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
MP P WGALLGAC H ++++ V R L++L
Sbjct: 670 RMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIEL 706
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/345 (19%), Positives = 144/345 (41%), Gaps = 76/345 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYL 49
++AC +S A+++H ++ S ++++ LI+ D RVF +
Sbjct: 220 IQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDS 279
Query: 50 FTYNTMINGGVRCLCVGNIKMALHL-HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
++N+++ G + +GN++ A H+ H + ++ S+ I
Sbjct: 280 VSWNSILAGYIE---IGNVEEAKHIYHQMPERSIIASNSMIV------------------ 318
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
LF + ++ +F +M E+D+V+W+ +I+ ++ E + TF+ +
Sbjct: 319 ---------LFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHK 369
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
G + ++ +A SA A++ + G +HS + + + + + LI MY KCG
Sbjct: 370 IGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG---- 425
Query: 229 ESSIQIGKAL---------------VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
I + + L ++ Y + A F+ M ++++SW +IS +
Sbjct: 426 --DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGY 483
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK 305
+Q + ++ F VS++S C+ + +GK
Sbjct: 484 AQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK 528
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 149/344 (43%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +H VK S+ + + IDM+ CG +D A F M N + W
Sbjct: 229 CSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISW 288
Query: 122 --------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
G I + F KMPE+D VSW MI R E L F +
Sbjct: 289 TTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 348
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ +A A + LE G + + + + D+FV + LIDMY KC
Sbjct: 349 PDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKC--------- 399
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
G KA+ F MS+R+ +W +I + G EK F
Sbjct: 400 -------------GDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKA 446
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
++ +LS C+H+G V KG+ YF M ++ C+VDLL +G L E
Sbjct: 447 SILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKE 506
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A ++I+ MP K ++WGALL C + + +AE+V++ +L+L+
Sbjct: 507 AYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELE 550
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 112/298 (37%), Gaps = 70/298 (23%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++PE +L WNTMI +R F + ++E+ G + F
Sbjct: 74 LFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIA 133
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE+G LH V+ +VFV + L+ MYL C G
Sbjct: 134 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC----------------------GQLDT 171
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F++ + ++I+W ++ISA+++ G E+ R F V +LS CS
Sbjct: 172 ARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSK 231
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDL----------LGL--------------- 329
+ GK + + V M+D+ LG+
Sbjct: 232 LKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTI 291
Query: 330 -SGL--LGE---AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
SG LGE A+ D+MP K V W A++ K A + RN+ +VK
Sbjct: 292 VSGFTNLGEIDVARNYFDKMPEKDY-VSWTAMIDGYIRSNRFKEALELFRNMQATNVK 348
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 91/420 (21%), Positives = 163/420 (38%), Gaps = 69/420 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDY--RVFCDIGPR 47
++ C S+ L +++H Q I L ++ LQ D Y R+F +I
Sbjct: 25 LETCESMDQL---QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEP 81
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLH----GLVKKFY--------FVSDESIA-KSSI 94
LF +NTMI G R L + ++L+L G+ Y F D ++ +
Sbjct: 82 NLFIWNTMIRGYSR-LDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQL 140
Query: 95 DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG 154
HV + Y ++ L C + R + F P+ D+++WN +IS + G
Sbjct: 141 HGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGV--FDVCPKADVITWNMIISAYNKVG 198
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
E+ F+ + + +++ SA + + DL G +HS V + + ++ + +
Sbjct: 199 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLEN 258
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
+IDMY CG ++S++ I F M+ R++ISW ++S F+
Sbjct: 259 AMIDMYADCG--EMDSALGI--------------------FRSMNNRDIISWTTIVSGFT 296
Query: 275 QAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVD 325
G ++ R +F + +++ G S + F M MV
Sbjct: 297 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 356
Query: 326 LLGLSGLLGE------AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+L LG + ID K + AL+ + AE + R + Q D
Sbjct: 357 VLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 416
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 54/225 (24%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM++ C +G +++ + + + +D + + IDM+ KCG VD AES
Sbjct: 353 TMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAES----- 407
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F++M +RD +W MI L +G G + L F
Sbjct: 408 -----------------IFREMSQRDKFTWTAMIVGLAVNGHGEKALDMF---------- 440
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK-----CGCNGI 228
S+ML A+ + + L +GL+D K +GI
Sbjct: 441 SNMLKASILPDEITYIGV----------------LSACTHTGLVDKGRKYFLRMTSQHGI 484
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISA 272
E +I LV + A G ++A E M + N I W L++
Sbjct: 485 EPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAG 529
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 154/320 (48%), Gaps = 51/320 (15%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRL-LIMFQKMPER 138
SI ++++V C ++ A F M + + W K G + L +F++M ER
Sbjct: 143 SIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSER 202
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
LVSWNT+IS L ++ E L F ++ HGF + T + + LE G +H
Sbjct: 203 SLVSWNTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIH 262
Query: 199 SRVVHMEPSLDVF-VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
S + + VG+ LID Y KCG + +KA F+
Sbjct: 263 SYASSKGNLVGITTVGNSLIDFYCKCG----------------------NIEKAYNIFQK 300
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKG 304
M+ ++++SW +I F+ G E F FV++L+ C HSG + KG
Sbjct: 301 MTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAVLTACVHSGLLEKG 360
Query: 305 KHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
+ F++MA+ Y +F CMVDLLG G + EA KLI MP +P +WGA+LGAC
Sbjct: 361 RELFSSMAE-DYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQPNATLWGAVLGAC 419
Query: 360 CSHYNTKLAELVMRNLLQLD 379
+H N KLAE+ ++ L+ L+
Sbjct: 420 RTHGNLKLAEMAVKELISLE 439
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 153/336 (45%), Gaps = 55/336 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C+ N+ M ++LH + K+ VS +A S IDM+ KC +D A
Sbjct: 419 CSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKA--------------- 463
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F E+++VSW ++I L + FE L F E+ +S+
Sbjct: 464 -------LEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCV 515
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN--------GIESSIQ 233
SA A + L G +H+ + S D F+ + ++DMY++CG ++ +
Sbjct: 516 LSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVDHEVT 575
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLS 293
L+T YAE G A F+ M N+ V F+S+L
Sbjct: 576 SWNILLTGYAERGKGAHATELFQRMVESNVSPNEVT------------------FISILC 617
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
CS SG V +G YF +M K+ Y+ ++ C+VDLLG SG L EA + I +MP KP
Sbjct: 618 ACSRSGMVAEGLEYFNSM-KYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPD 676
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+WGALL +C H++ +L EL N+ Q D G
Sbjct: 677 PAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVG 712
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 102/278 (36%), Gaps = 76/278 (27%)
Query: 36 DDYRVFCDIGPRYLFTYNTMING--------------------GVR------------CL 63
D + VF + R LF++N ++ G GV+ C
Sbjct: 159 DAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCG 218
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
+ N+ +H V ++ F SD + + I M+VKCG V+ A
Sbjct: 219 GMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTAR---------------- 262
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
++F KMP RD +SWN MIS +G E L F + + M + +
Sbjct: 263 ------LVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVIT 316
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A + D G +H V+ E D I +L+ MY+
Sbjct: 317 ACELLGDDRLGRQIHGYVLRTEFGRDP----------------------SIHNSLIPMYS 354
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
G ++A+ F R+++SW +IS + + +K
Sbjct: 355 SVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQK 392
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 24/166 (14%)
Query: 122 KFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+FG ++ +F +M +R+L SWN ++ + G E L + + G +
Sbjct: 153 RFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPC 212
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+ +L G +H V+ G ES + + AL+T
Sbjct: 213 VLRTCGGMPNLVRGREIHVHVIRY----------------------GFESDVDVVNALIT 250
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF 285
MY + G A L F+ M R+ ISW +IS + + GV LE R F
Sbjct: 251 MYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLF 296
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE---------- 280
S+Q+G AL++M+ G+ A F M +RN+ SW VL+ +++AG+ +
Sbjct: 140 SLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRML 199
Query: 281 ----KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLL 333
KP + F +L C + +G+ + ++ + + L+ + G +
Sbjct: 200 WVGVKPD-VYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDV 258
Query: 334 GEAKKLIDEMPSKPTCVIWGALL 356
A+ + D+MP++ + W A++
Sbjct: 259 NTARLVFDKMPNRDR-ISWNAMI 280
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 177/411 (43%), Gaps = 75/411 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+ C + + ++H ++ L +F+Q +D ++VF + R +
Sbjct: 138 LSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNV 197
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ ++I G R K A+ L F+ + ++ + + +DM++KCGA+D A+
Sbjct: 198 VSWTSLICGYARG---DRPKEAVSL------FFEMLNKVMVNALVDMYMKCGAIDAAKR- 247
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F + +R+LV +NT++S R G E L E+
Sbjct: 248 ---------------------LFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 286
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + +A SA A + DL +G H VH Y++ NGI
Sbjct: 287 GPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHT---------------YIEK--NGIP 329
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+++ ALV M+A G Q A F M+ R++ +W I + G E F
Sbjct: 330 CDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQM 389
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLL 333
FV +L+ CSH G V +G H F+ M + ++ CMVDLLG +GLL
Sbjct: 390 LIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLL 449
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
EA LI MP +P V+WG+LL AC H N ++A + +L + G
Sbjct: 450 REAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAG 500
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 165/356 (46%), Gaps = 51/356 (14%)
Query: 52 YNTMINGGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+N GV LCV +++A +HG V F+S+ ++ S +D + KCG + A +
Sbjct: 193 FNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTL 252
Query: 110 FLRMLNPSLFCW--------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETL 160
F ML + W K+G + +F +MPE++ VSW+ +IS R+ G E L
Sbjct: 253 FDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEAL 312
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F ++ G +++ A AS+ L+ G +H ++ + V S LIDMY
Sbjct: 313 DYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMY 372
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM-SRRNMISWMVLISAFSQAGVL 279
KCG +E+S + F LM ++++++ W +ISA +Q G
Sbjct: 373 SKCGM--LEASCCV--------------------FHLMGNKQDVVVWNTMISALAQNGHG 410
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVC 322
EK F F+ +LS CSHSG V +G +F AM F ++ C
Sbjct: 411 EKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSC 470
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
++DLLG +G E ++ M KP +W ALLG C H N +L V +++L
Sbjct: 471 LIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIEL 526
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 135/327 (41%), Gaps = 34/327 (10%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERD 139
+A I M+ +CG A F +M +L+ W K G + +F +M E+D
Sbjct: 100 VANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKD 159
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSWNT++ + G E + + + G ++ +A + +L+ +H
Sbjct: 160 VVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHG 219
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCG---C------NGIESSIQIGKALVTMYAEGGSTQK 250
+V+ ++ + S ++D Y KCG C + I +V+ YA+ G
Sbjct: 220 QVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNS 279
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A F M +N +SW LIS +++ + + +F F S L C+
Sbjct: 280 ASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACAS 339
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ GK + + + C + ++D+ G+L + + M +K V+W
Sbjct: 340 IAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNT 399
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVK 381
++ A + + + A + ++++ +K
Sbjct: 400 MISALAQNGHGEKAMQMFNDMVESGLK 426
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 173/376 (46%), Gaps = 65/376 (17%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM--- 96
+F ++ R + ++ TMI G V+ V + +K + V E S M
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQNQQVD----------IARKLFEVMPEKNEVSWTAMLKG 324
Query: 97 HVKCGAVDYAESAFLRML-------NPSLFCWKFG----IIRLLIMFQKMPERDLVSWNT 145
+ CG +D A F M N + C FG + + +F +M E+D +W+
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVACNAMILC--FGQNGEVPKARQVFDQMREKDEGTWSA 382
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
MI + R G + L F + G + + S A + +L+ G +H+++V +
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQ 442
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
LDV+V S L+ MY+KCG + KA F+ + ++++
Sbjct: 443 FDLDVYVASVLLSMYIKCG----------------------NLAKAKQVFDRFAVKDVVM 480
Query: 266 WMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAM- 311
W +I+ ++Q G+ +E R F FV +LS CS++G V KG F +M
Sbjct: 481 WNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSME 540
Query: 312 AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
K+ ++ CMVDLLG +G L EA LI++MP + +IWGALLGAC +H LA
Sbjct: 541 TKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLA 600
Query: 369 ELVMRNLLQLDVKVFG 384
E+ + LL L+ K G
Sbjct: 601 EVAAKKLLVLEPKNAG 616
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 122/301 (40%), Gaps = 24/301 (7%)
Query: 77 LVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII--------- 126
LV ++ S+ I+++S I + + G ++ A F M + ++ W +
Sbjct: 87 LVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQ 146
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF-GLSSMLYATAFSAR 185
MF KM ER+ +SWN ++S +G E F + ++M+
Sbjct: 147 EAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGM 206
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
S + + VV L + G ID + E + ++ Y +
Sbjct: 207 ISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQV 266
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCS 296
G +A + F+ M RRN++SW +I+ + Q ++ R F + ++L G +
Sbjct: 267 GRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYT 326
Query: 297 HSGPVTKGKHYFTAMA-KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
+ G + + F AM K C M+ G +G + +A+++ D+M K W A+
Sbjct: 327 NCGRLDEASELFNAMPIKSVVACN--AMILCFGQNGEVPKARQVFDQMREKDEGT-WSAM 383
Query: 356 L 356
+
Sbjct: 384 I 384
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS------ 290
+L+T Y+ G +KA + F+ M +N+ISW +++ + Q ++ + F +S
Sbjct: 103 SLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTIS 162
Query: 291 ---LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
L+SG ++G + + + F M + + MV G++ EA+ L +MP K
Sbjct: 163 WNGLVSGYINNGMINEAREVFDRMPERNVVSW-TAMVRGYVKEGMISEAETLFWQMPEK- 220
Query: 348 TCVIWGALLGA 358
V W +LG
Sbjct: 221 NVVSWTVMLGG 231
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------F 287
++V Y + Q+A F+ MS RN ISW L+S + G++ + R F
Sbjct: 134 SIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVS 193
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+ +++ G G +++ + F M + + V + LL G + EA +L D MP K
Sbjct: 194 WTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQ-EGRIDEACRLFDMMPEKD 252
Query: 348 TCVIWGALLGAC 359
+ G C
Sbjct: 253 VVTRTNMIGGYC 264
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 149/344 (43%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +H VK S+ + + IDM+ CG +D A F M N + W
Sbjct: 250 CSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISW 309
Query: 122 --------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
G I + F KMPE+D VSW MI R E L F +
Sbjct: 310 TTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 369
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ +A A + LE G + + + + D+FV + LIDMY KC
Sbjct: 370 PDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKC--------- 420
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
G KA+ F MS+R+ +W +I + G EK F
Sbjct: 421 -------------GDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKA 467
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
++ +LS C+H+G V KG+ YF M ++ C+VDLL +G L E
Sbjct: 468 SILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKE 527
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A ++I+ MP K ++WGALL C + + +AE+V++ +L+L+
Sbjct: 528 AYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELE 571
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 112/298 (37%), Gaps = 70/298 (23%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++PE +L WNTMI +R F + ++E+ G + F
Sbjct: 95 LFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIA 154
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE+G LH V+ +VFV + L+ MYL C G
Sbjct: 155 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC----------------------GQLDT 192
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F++ + ++I+W ++ISA+++ G E+ R F V +LS CS
Sbjct: 193 ARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSK 252
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDL----------LGL--------------- 329
+ GK + + V M+D+ LG+
Sbjct: 253 LKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTI 312
Query: 330 -SGL--LGE---AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
SG LGE A+ D+MP K V W A++ K A + RN+ +VK
Sbjct: 313 VSGFTNLGEIDVARNYFDKMPEK-DYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 369
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 91/420 (21%), Positives = 163/420 (38%), Gaps = 69/420 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDY--RVFCDIGPR 47
++ C S+ L +++H Q I L ++ LQ D Y R+F +I
Sbjct: 46 LETCESMDQL---QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEP 102
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLH----GLVKKFY--------FVSDESIA-KSSI 94
LF +NTMI G R L + ++L+L G+ Y F D ++ +
Sbjct: 103 NLFIWNTMIRGYSR-LDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQL 161
Query: 95 DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG 154
HV + Y ++ L C + R + F P+ D+++WN +IS + G
Sbjct: 162 HGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGV--FDVCPKADVITWNMIISAYNKVG 219
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
E+ F+ + + +++ SA + + DL G +HS V + + ++ + +
Sbjct: 220 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLEN 279
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
+IDMY CG ++S++ I F M+ R++ISW ++S F+
Sbjct: 280 AMIDMYADCG--EMDSALGI--------------------FRSMNNRDIISWTTIVSGFT 317
Query: 275 QAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVD 325
G ++ R +F + +++ G S + F M MV
Sbjct: 318 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 377
Query: 326 LLGLSGLLGE------AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+L LG + ID K + AL+ + AE + R + Q D
Sbjct: 378 VLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 437
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 54/225 (24%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM++ C +G +++ + + + +D + + IDM+ KCG VD AES
Sbjct: 374 TMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAES----- 428
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F++M +RD +W MI L +G G + L F
Sbjct: 429 -----------------IFREMSQRDKFTWTAMIVGLAVNGHGEKALDMF---------- 461
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK-----CGCNGI 228
S+ML A+ + + L +GL+D K +GI
Sbjct: 462 SNMLKASILPDEITYIGV----------------LSACTHTGLVDKGRKYFLRMTSQHGI 505
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISA 272
E +I LV + A G ++A E M + N I W L++
Sbjct: 506 EPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAG 550
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 181/401 (45%), Gaps = 69/401 (17%)
Query: 10 LPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIK 69
+P+ KI ++ T + L+ + R+F ++ R +F + M++G V+
Sbjct: 241 MPVRDKISWNIMITGYAQN---GLLSEARRLFEELPIRDVFAWTAMVSGFVQ-------- 289
Query: 70 MALHLHGLVKKFYFVSDESIAKSSIDM------HVKCGAVDYAESAFLRMLNPSLFCWKF 123
+G++ + + +E K+ + +V+ ++ A F +M + + W
Sbjct: 290 -----NGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNT 344
Query: 124 ---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174
I + I+F +MP+RD +SW MIS + G E L FI++ G L+
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234
A A S+ A + LE G LH R+V G ++
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVKA----------------------GFQTGYIA 442
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------- 286
G AL+ MY + GS ++A FE ++ ++++SW +I+ +++ G ++ F
Sbjct: 443 GNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIK 502
Query: 287 ----FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKK 338
V +LS CSH+G V KG YF +M + T ++ CM+DLLG +G L EA
Sbjct: 503 PDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALN 562
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L+ MP P WGALLGA H +T+L E + +++
Sbjct: 563 LMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEME 603
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 113/266 (42%), Gaps = 26/266 (9%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-------WNHGFGLSSMLYATAFS 183
+F+KMP+RDL+SWN M+S ++G F ++ WN + S F
Sbjct: 113 VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWN---AMLSGFAQNGFV 169
Query: 184 ARA-SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
A ++D L + L +V +G I+ + + ++ I L+ Y
Sbjct: 170 EEARKIFD----QMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF--------FFFVSLLS 293
A F+ M R+ ISW ++I+ ++Q G+L E R F F + +++S
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G +G + + F M + + + + S + +A++L D+MPS+ T W
Sbjct: 286 GFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYV-QSQQIEKARELFDQMPSRNTSS-WN 343
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLD 379
++ N A+++ + Q D
Sbjct: 344 TMVTGYAQCGNIDQAKILFDEMPQRD 369
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 28/238 (11%)
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+ D+V WN IS R G L F N S++ Y S S +
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVF----NGMRRRSTVTYNAMISGYLSNNKFD---- 108
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGI-ESSIQIGKALVTMYAEGGS 247
+V P D+ + ++ Y+K G N + E + A+++ +A+ G
Sbjct: 109 CARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHS 298
++A F+ M +N ISW L+SA+ Q G +E R F + L+ G
Sbjct: 169 VEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228
Query: 299 GPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ + F M + + M+ +GLL EA++L +E+P + W A++
Sbjct: 229 KRLDDARSLFDRMPVRDKISWNI-MITGYAQNGLLSEARRLFEELPIRDV-FAWTAMV 284
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 170/359 (47%), Gaps = 51/359 (14%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS--IDMHVKCGAVDYAESAFL 111
TM+ + C +G+ ++ +H +++ + ++ ++ +DM+VKC + A+S F
Sbjct: 230 TMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFN 289
Query: 112 RMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
++ W K G + + F+ MP RDLVSWN++I+ + G
Sbjct: 290 VIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRL 349
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F + + SA A + L G +H VV M+ +D F+GS IDMY K
Sbjct: 350 FENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWK 409
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
CG S ++A + F ++ +++ W +I+ F+ G K
Sbjct: 410 CG----------------------SIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKA 447
Query: 283 RFFFF------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVD 325
F+ FV++L+ CSHSG V++G F +M K Y ++ C+VD
Sbjct: 448 LQLFYEMQEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSM-KERYGIEPGVEHYGCLVD 506
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
LLG SG E K +I+ MP KP+ IWGA+L AC ++ N ++AE+ + LL+L+ + G
Sbjct: 507 LLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEG 565
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 33/215 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+FQ+M D VS+N MI + G E L E+ G + D
Sbjct: 184 VFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGD 243
Query: 191 LEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+ G +H+ + + S ++ + + L+DMY+KC I SI
Sbjct: 244 AQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSI---------------- 287
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSG 299
F ++ R++ ISW +I+ +++ G LE FF + S+++G + G
Sbjct: 288 ------FNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKG 341
Query: 300 PVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLG 334
+ F M FV +++L+ + +G
Sbjct: 342 DCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIG 376
>gi|449523361|ref|XP_004168692.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Cucumis sativus]
Length = 516
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 165/357 (46%), Gaps = 52/357 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T+I +G+I + LH K S+ + + +D++VK G ++ A+ A
Sbjct: 96 FTFGTVIQS---AKALGDIHIGKQLHVCAIKTGLHSNLFVGSALLDLYVKVGVIEEAQRA 152
Query: 110 FLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F + P++ + K IR L +F +MPER++VSWN+MI ++ G + +
Sbjct: 153 FEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAV 212
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
FI++ G + + A A A++ + G H+ V LDVFV + LI Y
Sbjct: 213 HLFIDMLREGILPTQSTFPCAICAAANIASIGIGRSFHACAVKFFGKLDVFVSNSLISFY 272
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF-ELMSRRNMISWMVLISAFSQAGVL 279
KC GS + + L F +L+ RN++SW ++S F+Q G
Sbjct: 273 AKC----------------------GSMEDSLLVFNKLLDERNVVSWNAVLSGFAQNGRG 310
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM----AKFTYTCYFVC 322
++ F+ F+SLL C+H+G V +G YF ++ C
Sbjct: 311 KEAIDFYQRMILAGCKPNAVTFLSLLWACNHAGLVDEGYSYFNQARLDNPNLLKAEHYAC 370
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MVDLL SG A++ I ++P P W ALLG C H N +L EL + +L LD
Sbjct: 371 MVDLLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGGCQIHSNVELGELAAQRILALD 427
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
++ K+P ++VS T I R E L F + + + T + ++ D
Sbjct: 51 LYDKLPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSAKALGD 110
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK-----------ALV 239
+ G LH + ++FVGS L+D+Y+K G IE + + + +L+
Sbjct: 111 IHIGKQLHVCAIKTGLHSNLFVGSALLDLYVKVGV--IEEAQRAFEDIKMPNVVSYTSLI 168
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+ Y + + A F+ M RN++SW +I FSQ G E F
Sbjct: 169 SGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLF 215
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 155/350 (44%), Gaps = 61/350 (17%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
R F T+++ C +G+ + + ++ + ++A + +DM+ KCG +D A
Sbjct: 267 RAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKA 326
Query: 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
+F +M RD+V+W+ MIS T+ E L F E+
Sbjct: 327 RR----------------------LFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEM 364
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
+ + + SA A + LE G +HS + + L V +G+ L+D Y KCGC
Sbjct: 365 QGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGC- 423
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
I+ +++ AFE M RN +W LI + G + F
Sbjct: 424 -IKDAVK--------------------AFESMPVRNTWTWTALIKGMASNGRSREALELF 462
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGL 329
F+ +L CSH V +G+ +FT+M + C ++ CMVDLLG
Sbjct: 463 SSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGR 522
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+GL+ EA + I MP +P V+W ALL AC H N ++ E ++ ++ LD
Sbjct: 523 AGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLD 572
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/369 (19%), Positives = 140/369 (37%), Gaps = 70/369 (18%)
Query: 29 IFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDES 88
+F++++DD + P +T+ N C + ++ + + K F+ D+
Sbjct: 157 LFVEMLDD-----TAVSP----DQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQF 207
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+ S I M+ CG V A ++F + + +++WN MI+
Sbjct: 208 VLNSLIHMYASCGDVVAAH----------------------VLFHTVQVKGVIAWNAMIA 245
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
++G E + F + + + +A + D G
Sbjct: 246 GYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG-------------- 291
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
I Y + G+ S + ALV MYA+ G KA F+ M R++++W
Sbjct: 292 ------QWIAEYAE--EKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSA 343
Query: 269 LISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK--HYFTAMAK 313
+IS ++Q+ + F VS+LS C+ G + GK H +
Sbjct: 344 MISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKD 403
Query: 314 FTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
T +VD G + +A K + MP + T W AL+ S+ ++ A +
Sbjct: 404 LPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWT-WTALIKGMASNGRSREALELF 462
Query: 373 RNLLQLDVK 381
++L+ +++
Sbjct: 463 SSMLEANIE 471
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 90/240 (37%), Gaps = 44/240 (18%)
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
P R S+N +I R G + L F+E ML TA S P
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVE----------MLDDTAVS-----------P 169
Query: 196 HLHS---RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
H+ V D+ VG G+ K G + +L+ MYA G A
Sbjct: 170 DQHTVANTVKSCSRMCDLSVGRGVQAYAFK---RGFMVDQFVLNSLIHMYASCGDVVAAH 226
Query: 253 LAFELMSRRNMISWMVLISAFSQAG----VLE------KPRFFFFFVSLLS---GCSHSG 299
+ F + + +I+W +I+ + + G V+E + R F V+LLS C G
Sbjct: 227 VLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLG 286
Query: 300 PVTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G+ Y +VD+ G L +A++L D M S+ V W A++
Sbjct: 287 DANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSR-DVVAWSAMI 345
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 123/456 (26%), Positives = 189/456 (41%), Gaps = 95/456 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LIDDDYRVFCDIGPRYLF-------- 50
+KACG + +H+ + S +F+Q LI + C R +F
Sbjct: 159 LKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDV 218
Query: 51 -TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
T+ TMING R C G+ +M LH
Sbjct: 219 VTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEH 278
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW-----------KFGII 126
+++ ++ + +DM+VKCG + A F M +F W G
Sbjct: 279 IRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSA 338
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSAR 185
R L F +MPER++VSWN MI+ +++ E L F + + G + SA
Sbjct: 339 RKL--FDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSAS 396
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ LE G +H V+ GI+ S+ + A++ MYA+
Sbjct: 397 GQLGCLEMGQEIHCNHVNKI---------------------GIQVSLILKNAVMDMYAKC 435
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
GS A F M +N++SW +ISA++ G +K F F+ +L
Sbjct: 436 GSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVL 495
Query: 293 SGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
S CS+ G V++G+ +F +M ++ CMVDLL GLL EA +LI MP + +
Sbjct: 496 SACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEAS 555
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
WGALL AC H N ++A+L LL+LD + G
Sbjct: 556 EGGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSG 591
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 174/368 (47%), Gaps = 70/368 (19%)
Query: 33 LIDDDYRVFCDIGPRYL----FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDES 88
L ++ R+F ++ R + +T+ +++N C VG+I +HGL+ K F + +
Sbjct: 346 LEEEALRLFKNMHGRNMKIDDYTFPSVLN----CCVVGSIN-PKSVHGLIIKTGFENYKL 400
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
++ + +DM+ K G +D A + +F+KM E+D++SW ++++
Sbjct: 401 VSNALVDMYAKTGDMDCAYT----------------------VFEKMLEKDVISWTSLVT 438
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
++ E+L F ++ G + A+ SA A + LE+G +H L
Sbjct: 439 GYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVH---------L 489
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
D F+ SGL S + +LV MYA+ G AD F M +++I+W
Sbjct: 490 D-FIKSGL------------RWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTA 536
Query: 269 LISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF- 314
+I ++Q G F+ F+ LL CSH+G V +G+ YF M K
Sbjct: 537 IIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVY 596
Query: 315 ---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
++ CM+DL G SG L EAK+L+D+M KP +W +LL AC H N +LAE
Sbjct: 597 GIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERA 656
Query: 372 MRNLLQLD 379
NL +L+
Sbjct: 657 ATNLFELE 664
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 117/309 (37%), Gaps = 57/309 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G I+ +HG V K F + + +DM+ KC V AE F +
Sbjct: 172 CSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGL-------- 223
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ ++ V W M++ ++G G++ + F + G + + T
Sbjct: 224 ------------EFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTI 271
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A +SV +G +H +V +V+V S L+DMY KC
Sbjct: 272 LTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKC------------------ 313
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFF 288
G + A E M +++SW L+ F + G+ E+ R F + F
Sbjct: 314 ----GDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTF 369
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
S+L+ C K H F Y +VD+ +G + A + ++M K
Sbjct: 370 PSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKD 429
Query: 348 TCVIWGALL 356
+ W +L+
Sbjct: 430 V-ISWTSLV 437
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 112/301 (37%), Gaps = 72/301 (23%)
Query: 131 MFQKMPERDLVSWNTMISILTRHG-----------------------------FG--FET 159
+F KMP++D SWNTMIS G FG E
Sbjct: 87 LFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEA 146
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
F + G+ S + +S+ ++ G +H VV +VFV +GL+DM
Sbjct: 147 FDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDM 206
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS--RRNMISWMVLISAFSQAG 277
Y KC C +A+ F+ + R+N + W +++ ++Q G
Sbjct: 207 YAKCKC----------------------VSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-V 321
K FF F ++L+ CS G+ H F + F Y
Sbjct: 245 DGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQS 304
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+VD+ G L AK +++ M V W +L+ H + A + +N+ ++K
Sbjct: 305 ALVDMYAKCGDLKNAKNMLETMEDDDV-VSWNSLMVGFVRHGLEEEALRLFKNMHGRNMK 363
Query: 382 V 382
+
Sbjct: 364 I 364
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 170/373 (45%), Gaps = 66/373 (17%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ ++ R L + K+ + LHGLV K SD + S + ++ KCG +D A
Sbjct: 109 FTFPFLLKACARLL---DSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKV 165
Query: 110 FLRMLNPSLFCWK--------FGIIRLLI--------MFQKMPERDLVSWNTMISILTRH 153
F + ++ W G R I +F M E+D+VSW++MI +
Sbjct: 166 FDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASN 225
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE---WGPHLHSRVVHMEPSLDV 210
G E L F ++ N GF A A + LE W +L R +
Sbjct: 226 GLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDR--------NE 277
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
F+G+ ++ G AL+ MYA+ G A F M +++++ W I
Sbjct: 278 FLGNPVL-----------------GTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAI 320
Query: 271 SAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTKGKHYFTAMAK-FT 315
S + +G + K F F FV LL C+H+G V +G+ YF +M + FT
Sbjct: 321 SGLAMSGHV-KAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFT 379
Query: 316 YTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
T ++ CMVDLLG +G L EA +L+ MP + ++WGALLG C H +T+L E V+
Sbjct: 380 LTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVL 439
Query: 373 RNLLQLDVKVFGS 385
+ L+ L+ G+
Sbjct: 440 KQLIALEPSNSGN 452
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 104/258 (40%), Gaps = 33/258 (12%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + E ++ +NTMI L + E++ + + G S + A A + D
Sbjct: 64 IFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLD 123
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTM 241
+ G LH VV D FV + L+ +Y KCG + E ++ A+++
Sbjct: 124 SKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISG 183
Query: 242 YAEGGSTQKA-DL------AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------- 287
Y G ++A D+ F+ M ++++SW +I ++ G+ ++ FF
Sbjct: 184 YIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGF 243
Query: 288 ------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKK 338
V +L C+ G + G M + + V ++D+ G + A +
Sbjct: 244 RPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWE 303
Query: 339 LIDEMPSKPTCVIWGALL 356
+ M K V+W A +
Sbjct: 304 VFRGM-RKKDIVVWNAAI 320
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 148/329 (44%), Gaps = 46/329 (13%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLLI-MFQ 133
F SD + S ID++VKCG + A F M + W K+G + +F
Sbjct: 174 FASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFD 233
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+P +D+V+W M++ ++G E L F ++ + G + A SA A +
Sbjct: 234 DLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQL----- 288
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
V H D+ SG G ++ +G AL+ MY++ GS +A
Sbjct: 289 -----GAVKHANWIRDIAERSGF----------GPSGNVVVGSALIDMYSKCGSPDEAYK 333
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGP 300
FE+M RN+ S+ +I ++ G F F+ +LS CSH+G
Sbjct: 334 VFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGL 393
Query: 301 VTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V +G+ F M KF ++ CMVDLLG +G L EA L+ MP +P +WGALL
Sbjct: 394 VEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALL 453
Query: 357 GACCSHYNTKLAELVMRNLLQLDVKVFGS 385
GAC H N +A++ L +L+ G+
Sbjct: 454 GACRIHGNPDIAQIAANELFKLEPNGIGN 482
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L++F ++ + W MI G E+ + + G G S ++ F A +
Sbjct: 96 LLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAA 155
Query: 189 YDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKAL 238
+++ G +H++ + + + D++VG+ +ID+Y+KCG G E + L
Sbjct: 156 LNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTEL 215
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+ YA+ G + A F+ + ++M++W +++ ++Q G ++ +F
Sbjct: 216 IVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYF 263
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 173/376 (46%), Gaps = 65/376 (17%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM--- 96
+F ++ R + ++ TMI G V+ V + +K + V E S M
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQNQQVD----------IARKLFEVMPEKNEVSWTAMLKG 324
Query: 97 HVKCGAVDYAESAFLRML-------NPSLFCWKFG----IIRLLIMFQKMPERDLVSWNT 145
+ CG +D A F M N + C FG + + +F +M E+D +W+
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVACNAMILC--FGQNGEVPKARQVFDQMREKDEGTWSA 382
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
MI + R G + L F + G + + S A + +L+ G +H+++V +
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQ 442
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
LDV+V S L+ MY+KCG + KA F+ + ++++
Sbjct: 443 FDLDVYVASVLLSMYIKCG----------------------NLAKAKQVFDRFAVKDVVM 480
Query: 266 WMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAM- 311
W +I+ ++Q G+ +E R F FV +LS CS++G V KG F +M
Sbjct: 481 WNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSME 540
Query: 312 AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
K+ ++ CMVDLLG +G L EA LI++MP + +IWGALLGAC +H LA
Sbjct: 541 TKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLA 600
Query: 369 ELVMRNLLQLDVKVFG 384
E+ + LL L+ K G
Sbjct: 601 EVAAKKLLVLEPKNAG 616
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 122/301 (40%), Gaps = 24/301 (7%)
Query: 77 LVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII--------- 126
LV ++ S+ I+++S I + + G ++ A F M + ++ W +
Sbjct: 87 LVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQ 146
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF-GLSSMLYATAFSAR 185
MF KM ER+ +SWN ++S +G E F + ++M+
Sbjct: 147 EAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGM 206
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
S + + VV L + G ID + E + ++ Y +
Sbjct: 207 ISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQV 266
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCS 296
G +A + F+ M RRN++SW +I+ + Q ++ R F + ++L G +
Sbjct: 267 GRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYT 326
Query: 297 HSGPVTKGKHYFTAMA-KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
+ G + + F AM K C M+ G +G + +A+++ D+M K W A+
Sbjct: 327 NCGRLDEASELFNAMPIKSVVACN--AMILCFGQNGEVPKARQVFDQMREKDEGT-WSAM 383
Query: 356 L 356
+
Sbjct: 384 I 384
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS------ 290
+L+T Y+ G +KA + F+ M +N+ISW +++ + Q ++ + F +S
Sbjct: 103 SLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTIS 162
Query: 291 ---LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
L+SG ++G + + + F M + + MV G++ EA+ L +MP K
Sbjct: 163 WNGLVSGYINNGMINEAREVFDRMPERNVVSW-TAMVRGYVKEGMISEAETLFWQMPEK- 220
Query: 348 TCVIWGALLGA 358
V W +LG
Sbjct: 221 NVVSWTVMLGG 231
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------F 287
++V Y + Q+A F+ MS RN ISW L+S + G++ + R F
Sbjct: 134 SIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVS 193
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+ +++ G G +++ + F M + + V + LL G + EA +L D MP K
Sbjct: 194 WTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQ-EGRIDEACRLFDMMPEKD 252
Query: 348 TCVIWGALLGAC 359
+ G C
Sbjct: 253 VVTRTNMIGGYC 264
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 112/439 (25%), Positives = 184/439 (41%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISS-IFLQLI-----------DDDYRVFCDIGPRY 48
+K C L + R +HA L+ + + + + LQ I DD R+F ++ +
Sbjct: 94 LKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKD 153
Query: 49 LFTYNTMINGG-------------VRCLCVG-------------------NIKMALHLHG 76
+ T+ +I G + L +G + LH
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHA 213
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K+ + S + + +DM+ +CG +D A+ + F MP
Sbjct: 214 FCLKYGYQSSVYVGSALVDMYARCGHMDAAQ----------------------LAFDGMP 251
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+ VSWN +IS R G G L ++ F + Y++ FSA AS+ LE G
Sbjct: 252 TKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKW 311
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H+ ++ L F+G+ L+DMY A+ GS A F+
Sbjct: 312 VHAHMIKSGLKLIAFIGNTLLDMY----------------------AKAGSIDDAKRVFD 349
Query: 257 LMSRRNMISWMVLISAFSQAGVLEK--PRFF-----------FFFVSLLSGCSHSGPVTK 303
+ + +++SW +++ +Q G+ ++ RF F+ +L+ CSHSG + +
Sbjct: 350 RLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDE 409
Query: 304 GKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
G +YF M K+ ++V VDLLG GLL A++ I EMP +PT +WGALLGAC
Sbjct: 410 GLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACR 469
Query: 361 SHYNTKLAELVMRNLLQLD 379
H N +L +LD
Sbjct: 470 MHKNMELGVYAAERAFELD 488
>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 800
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 152/339 (44%), Gaps = 61/339 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C VG + + +HG K + + DE + S IDM+ KCG VD A
Sbjct: 412 CANVGLLWLGHQIHGYAIKRHIL-DEFVQNSLIDMYSKCGHVDLA--------------- 455
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++F ++ + +V+WN+MI ++ G E + F +++ + ++ + + TA
Sbjct: 456 -------YLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTA 508
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + + LE G LH +++ D+F+ + LIDMY KC
Sbjct: 509 IQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKC------------------ 550
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G + A F+ MS R+++SW +I G ++ F F
Sbjct: 551 ----GDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITF 606
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+++LS CSHSG V +GK YF +M F +F CMVDLL +G L EA ++I+ MP
Sbjct: 607 MNILSACSHSGYVEEGKFYFNSMKNFEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPF 666
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWGALL C H + + R+LL + G
Sbjct: 667 PAEASIWGALLNGCRIHQRMDMIRNIERDLLDMRTDDTG 705
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 132/324 (40%), Gaps = 62/324 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H K + D+S+ + I+ + + G + Y E +
Sbjct: 323 VHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEK----------------------VLH 360
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+ +R+++SWN +IS+ G E L F+++ G S +++ SA A+V L
Sbjct: 361 TIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWL 420
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H + LD FV + LIDMY KCG A L
Sbjct: 421 GHQIHGYAIKRHI-LDEFVQNSLIDMYSKCG----------------------HVDLAYL 457
Query: 254 AFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSGP 300
F+ + +++++W +I FSQ G LE R F F++ + CSH G
Sbjct: 458 IFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGH 517
Query: 301 VTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ KGK H A ++D+ G L A ++ D M S+ + V W A++G
Sbjct: 518 LEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSM-SERSVVSWSAMIG 576
Query: 358 ACCSHYNTKLAELVMRNLLQLDVK 381
C H + A + ++Q ++K
Sbjct: 577 GCGMHGDIDAAISLFAEMIQREMK 600
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 46/234 (19%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM++ C +G +++A +HG + + + + + + M+ +C AE F M
Sbjct: 202 TMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNM 261
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
N R + SW MIS R + + L F+E+
Sbjct: 262 FN----------------------RSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAP 299
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVV-HMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+++ S+ A L G +H V H++ D
Sbjct: 300 NAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDD----------------------- 336
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+G AL+ YA+ G + + +RN+ISW +LIS ++ G+ ++ F
Sbjct: 337 SLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIF 390
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 17/172 (9%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL-------------ISAF 273
G+ Q L+ Y++ G Q + L FE + W VL IS +
Sbjct: 28 GLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFMWAVLIKCHVWSNFCGEAISLY 87
Query: 274 SQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLL 333
++ + P F F S+L C+ G + G+ + K+ V LLG+ G L
Sbjct: 88 NKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDL 147
Query: 334 G---EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
G AKK+ D M ++ V W +++ + + + R L+ DV++
Sbjct: 148 GCLSNAKKVFDNMTTRDL-VSWSSIISCYVDNGESSEGLEMFRLLVSQDVEL 198
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 100/278 (35%), Gaps = 66/278 (23%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C GN+ + +HG + K+ D + S + M+ G + A+
Sbjct: 109 CAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKK------------- 155
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F M RDLVSW+++IS +G E L F L + L S+ +
Sbjct: 156 ---------VFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSI 206
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + L +H ++ IE+ + ALV M
Sbjct: 207 AGACGELGFLRLAKSVHGCIIRQR----------------------IETRGPLNDALVLM 244
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
Y+ A+ F M R++ SW +IS ++++ ++ F
Sbjct: 245 YSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTI 304
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDL 326
+++LS C+ + +GK + CY V +DL
Sbjct: 305 MAVLSSCAGFNLLREGK---------SVHCYAVKHIDL 333
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F+ D W +I F E + + ++ +S ++++ A A
Sbjct: 54 LVFETFQNPDSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFG 113
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+L+ G +H R++ +D V + L+ MY GC
Sbjct: 114 NLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDLGC----------------------LS 151
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAG 277
A F+ M+ R+++SW +IS + G
Sbjct: 152 NAKKVFDNMTTRDLVSWSSIISCYVDNG 179
>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g01510
gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 135/308 (43%), Gaps = 61/308 (19%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+ S +DM+ KC + AE ++F+ +P+R VSW +IS
Sbjct: 388 VGNSLVDMYAKCEMFEEAE----------------------LIFKSLPQRTTVSWTALIS 425
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+ G L F ++ +AT A AS L G LH+ ++
Sbjct: 426 GYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE 485
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
+VF GSGL+DMY KCG I+ ++Q+ FE M RN +SW
Sbjct: 486 NVFSGSGLVDMYAKCG--SIKDAVQV--------------------FEEMPDRNAVSWNA 523
Query: 269 LISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKF- 314
LISA + G E F + +L+ CSH G V +G YF AM+
Sbjct: 524 LISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIY 583
Query: 315 ---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
++ CM+DLLG +G EA+KL+DEMP +P ++W ++L AC H N LAE
Sbjct: 584 GITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERA 643
Query: 372 MRNLLQLD 379
L ++
Sbjct: 644 AEKLFSME 651
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 39/250 (15%)
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
++ ++F +MPE D VS+N +IS ++ +L F E+ GF + +AT S
Sbjct: 301 VLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSI 360
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ L+ G LH + + + VG+ L+DMY KC M+ E
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKC----------------EMFEE 404
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
A+L F+ + +R +SW LIS + Q G+ F F ++
Sbjct: 405 ------AELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATV 458
Query: 292 LSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPT 348
L + + GK H F + + +VD+ G + +A ++ +EMP +
Sbjct: 459 LKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDR-N 517
Query: 349 CVIWGALLGA 358
V W AL+ A
Sbjct: 518 AVSWNALISA 527
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 39/243 (16%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F+++PE+D V++NT+I+ + G E++ F+++ G S ++ A ++
Sbjct: 205 VLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLH 264
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D G LH+ V S D VG+ ++D Y K + L T
Sbjct: 265 DFALGQQLHALSVTTGFSRDASVGNQILDFYSKHD-----------RVLETR-------- 305
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCS 296
+ F+ M + +S+ V+IS++SQA E FF F ++LS +
Sbjct: 306 ---MLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAA 362
Query: 297 HSGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ + G+ + A+ + V +VD+ + EA+ + +P + T V W
Sbjct: 363 NLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQR-TTVSWT 421
Query: 354 ALL 356
AL+
Sbjct: 422 ALI 424
>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
Length = 531
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 162/354 (45%), Gaps = 50/354 (14%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY T + C +G +K +H V + F S + + + M+ KCG +D A + F
Sbjct: 157 TYVTALGA---CASLGALKEGKAIHLRVSECGFQS-LVVHTALLTMYAKCGELDAARAVF 212
Query: 111 LRM-----LNPSLFCW--KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
R+ + +L K G + L F+ +DLVSWN MI +HG G E L
Sbjct: 213 NRLASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDL 272
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
+ + + G + A++ SA A L+ G +HSRV+ +
Sbjct: 273 YQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQS---------------- 316
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
+SS+ + ALV MY G + A FE M +R+++SW + S ++Q G ++
Sbjct: 317 -----FQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQV 371
Query: 283 RFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVD 325
+ F S+L GCSH+G + +G F M +F+CMVD
Sbjct: 372 LDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVD 431
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LLG SG L +A+ L++ MP +P V W +LG+C +H + A+ R + +LD
Sbjct: 432 LLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELD 485
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 49/287 (17%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
I+M+ +CG V A AF ++ N + CW ++++ +
Sbjct: 96 INMYARCGDVSSARQAFEKIQNKHVVCW----------------------TSLMTAYVQT 133
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E L + + + G + Y TA A AS+ L+ G +H RV + V
Sbjct: 134 GHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQ-SLVVH 192
Query: 214 SGLIDMYLKCGC--------NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
+ L+ MY KCG N + S++ + ALVTMYA+ GS + A AFE R++++S
Sbjct: 193 TALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVS 252
Query: 266 WMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMA 312
W +I A++Q G+ + + S LS C+ SG + G+ + +
Sbjct: 253 WNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVL 312
Query: 313 K---FTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
K F + +V++ G G L A+ + ++M + + W A+
Sbjct: 313 KNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDV-LSWTAM 358
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 41/231 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + RD VSW +MIS +GF E L + ++ G S+ + +A A + D
Sbjct: 14 VFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLAD 73
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H+R+V D FVGS AL+ MYA G
Sbjct: 74 ---GKAIHARIVSSNMESD-FVGS----------------------ALINMYARCGDVSS 107
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A AFE + ++++ W L++A+ Q G + + +V+ L C+
Sbjct: 108 ARQAFEKIQNKHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACAS 167
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
G + +GK H + F ++ + G L A+ + + + S
Sbjct: 168 LGALKEGKAIHLRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRLASN 218
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 105/439 (23%), Positives = 185/439 (42%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL----------------------QLIDDDY 38
++ C SL +L + +IH Q+I + ++++ +L ++D
Sbjct: 422 LRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDV 481
Query: 39 RVFC---------DIGPRYLFTYNTMINGGVR------------CLCVGNIKMALHLHGL 77
+ D+ L + M N G+R C + + +H
Sbjct: 482 VSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQ 541
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ D SI + + ++ +CG A+ A+L F+K+
Sbjct: 542 SYISGYSEDLSIGNALVSLYARCGR---AQDAYL-------------------AFEKIDA 579
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D +SWN +IS + G E L F ++ G + + +A SA A+ +++ G +
Sbjct: 580 KDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQI 639
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ G +S + L+T+Y++ GS + A F
Sbjct: 640 HAMMIK----------------------TGYDSETEASNVLITLYSKCGSIEDAKREFFE 677
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M +N++SW +I+ +SQ G + F FV +LS CSH G V +G
Sbjct: 678 MPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEG 737
Query: 305 KHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
YF +M+K ++VC+VDLLG + LL A++ I+EMP +P +IW LL AC
Sbjct: 738 LSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACT 797
Query: 361 SHYNTKLAELVMRNLLQLD 379
H N ++ E R+LL+L+
Sbjct: 798 VHKNIEIGEFAARHLLELE 816
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 136/329 (41%), Gaps = 64/329 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+TY +++ C +G + + +H V K F + + IDM+ K G +D A
Sbjct: 416 YTYPSILR---TCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARG- 471
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ Q++ E D+VSW MI+ T+H E L F E+ N
Sbjct: 472 ---------------------ILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQ 510
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ +++A SA A + L G +H++ S D+ +G+ L+ +Y +C
Sbjct: 511 GIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARC------ 564
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK-------- 281
G Q A LAFE + ++ ISW LIS F+Q+G E+
Sbjct: 565 ----------------GRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQM 608
Query: 282 -----PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLL 333
F F S +S +++ + +GK M K Y T ++ L G +
Sbjct: 609 NQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSI 668
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+AK+ EMP K V W A++ H
Sbjct: 669 EDAKREFFEMPEK-NVVSWNAMITGYSQH 696
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 125/318 (39%), Gaps = 63/318 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + K+ LHG + K+ S+ + + + ++ + G + AE
Sbjct: 223 CTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQ------------- 269
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM RD +S+N++IS L + GF L F ++ + A+
Sbjct: 270 ---------IFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASL 320
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA ASV G LHS V+ M S D+ + L+D+Y+KC
Sbjct: 321 LSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKC------------------ 362
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
+ A F N++ W V++ A+ Q G L + + F +
Sbjct: 363 ----FDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTY 418
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK--FTYTCYFVC--MVDLLGLSGLLGEAKKLIDEMP 344
S+L C+ G + G+ T + K F + Y VC ++D+ G L A+ ++ +
Sbjct: 419 PSILRTCTSLGALDLGEQIHTQVIKSGFQFNVY-VCSVLIDMYAKHGELDTARGILQRLR 477
Query: 345 SKPTCVIWGALLGACCSH 362
+ V W A++ H
Sbjct: 478 EEDV-VSWTAMIAGYTQH 494
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 108/274 (39%), Gaps = 57/274 (20%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
++ +H + F S + ID++ K G VD A+
Sbjct: 129 QVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAK--------------------- 167
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
++F+++ +D VSW MIS L+++G E + F ++ + ++++ SA +
Sbjct: 168 -LVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKI 226
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+ G LH +V S + FV CN ALVT+Y+ G+
Sbjct: 227 ELFKLGEQLHGFIVKWGLSSETFV------------CN----------ALVTLYSRWGNL 264
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
A+ F M RR+ IS+ LIS +Q G ++ F SLLS C
Sbjct: 265 IAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSAC 324
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL 329
+ G KGK + + K + + LL L
Sbjct: 325 ASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/352 (19%), Positives = 118/352 (33%), Gaps = 97/352 (27%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G++ A LH + K F ++ + ID+++ G VD A
Sbjct: 20 CFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA--------------- 64
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ +F +P ++ WN +IS L + L F + +A+
Sbjct: 65 -------IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASV 117
Query: 182 FSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A + +H++++H +G SS + L+
Sbjct: 118 LRACSGGKAPFQVTEQIHAKIIH----------------------HGFGSSPLVCNPLID 155
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
+Y++ G A L FE + ++ +SW+ +IS SQ G ++ F
Sbjct: 156 LYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYV 215
Query: 288 FVSLLSGC-----------------------------------SHSGPVTKGKHYFTAMA 312
F S+LS C S G + + F+ M
Sbjct: 216 FSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMH 275
Query: 313 KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP---SKPTCVIWGALLGACCS 361
+ Y ++ L G A +L ++M KP CV +LL AC S
Sbjct: 276 RRDRISY-NSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACAS 326
>gi|449448675|ref|XP_004142091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Cucumis sativus]
Length = 516
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 165/357 (46%), Gaps = 52/357 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T+I +G+I + LH K S+ + + +D++VK G ++ A+ A
Sbjct: 96 FTFGTVIQSPK---ALGDIHIGKQLHVCAIKTGLHSNVFVGSALLDLYVKVGVIEEAQRA 152
Query: 110 FLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F + P++ + K IR L +F +MPER++VSWN+MI ++ G + +
Sbjct: 153 FEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAV 212
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
FI++ G + + A A A++ + G H+ V LDVFV + LI Y
Sbjct: 213 HLFIDMLREGILPTQSTFPCAICAAANIASIGIGRSFHACAVKFFGKLDVFVSNSLISFY 272
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF-ELMSRRNMISWMVLISAFSQAGVL 279
KC GS + + L F +L+ RN++SW ++S F+Q G
Sbjct: 273 AKC----------------------GSMEDSLLVFNKLLDERNVVSWNAVLSGFAQNGRG 310
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM----AKFTYTCYFVC 322
++ F+ F+SLL C+H+G V +G YF ++ C
Sbjct: 311 KEAIDFYQRMILAGCKPNAVTFLSLLWACNHAGLVDEGYSYFNQARLDNPNLLKAEHYAC 370
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MVDLL SG A++ I ++P P W ALLG C H N +L EL + +L LD
Sbjct: 371 MVDLLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGGCQIHSNVELGELAAQRILALD 427
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
++ KMP ++VS T I R E L F + + + T + ++ D
Sbjct: 51 LYDKMPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSPKALGD 110
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK-----------ALV 239
+ G LH + +VFVGS L+D+Y+K G IE + + + +L+
Sbjct: 111 IHIGKQLHVCAIKTGLHSNVFVGSALLDLYVKVGV--IEEAQRAFEDIKMPNVVSYTSLI 168
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+ Y + + A F+ M RN++SW +I FSQ G E F
Sbjct: 169 SGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLF 215
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 191/445 (42%), Gaps = 105/445 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRY- 48
+KAC + A +IHA I T L S++F++ I+ +VF D GP +
Sbjct: 145 LKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVF-DQGPHWD 203
Query: 49 LFTYNTMINGGVR-----------------------------CLCVGNIKMALHLHGLVK 79
L ++ T+I + C +G+ + + +
Sbjct: 204 LISWTTLIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGKKILAYMD 263
Query: 80 KFYFV--SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
F SD + + +DM++KCG A +F MP
Sbjct: 264 HHLFDVHSDVFLGNALLDMYLKCGQPHLARQ----------------------LFHLMPV 301
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
++LVSWN+MIS L G E L F + G S+ ++ A++ DLE G +
Sbjct: 302 KNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWV 361
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
HS + D +V + L+DMY KC GS +A + F+
Sbjct: 362 HSYIDKNHMKADGYVANALVDMYAKC----------------------GSIDQAFMVFQA 399
Query: 258 MSRRNMISWMVLISAFSQAGVLEK--------PRF-----FFFFVSLLSGCSHSGPVTKG 304
M +++ S+ +I F+ G ++ PR V +LS CSH+G + +G
Sbjct: 400 MKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEG 459
Query: 305 KHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+ +F M++ + T ++ CMVDLLG +GL+ EA+ ++MP P +WG+LLGAC
Sbjct: 460 RRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACK 519
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
H +L E V++ L++++ + G+
Sbjct: 520 IHAKVELGETVIQKLIEMEPERDGA 544
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 181/401 (45%), Gaps = 69/401 (17%)
Query: 10 LPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIK 69
+P+ KI ++ T + L+ + R+F ++ R +F + M++G V+
Sbjct: 241 MPVRDKISWNIMITGYAQN---GLLSEARRLFEELPIRDVFAWTAMVSGFVQ-------- 289
Query: 70 MALHLHGLVKKFYFVSDESIAKSSIDM------HVKCGAVDYAESAFLRMLNPSLFCWKF 123
+G++ + + +E K+ + +V+ ++ A F +M + + W
Sbjct: 290 -----NGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNT 344
Query: 124 ---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174
I + I+F +MP+RD +SW MIS + G E L FI++ G L+
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234
A A S+ A + LE G LH R+V G ++
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVKA----------------------GFQTGYIA 442
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------- 286
G AL+ MY + GS ++A FE ++ ++++SW +I+ +++ G ++ F
Sbjct: 443 GNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIK 502
Query: 287 ----FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKK 338
V +LS CSH+G V KG YF +M + T ++ CM+DLLG +G L EA
Sbjct: 503 PDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALN 562
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L+ MP P WGALLGA H +T+L E + +++
Sbjct: 563 LMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEME 603
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 113/266 (42%), Gaps = 26/266 (9%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-------WNHGFGLSSMLYATAFS 183
+F+KMP+RDL+SWN M+S ++G F ++ WN + S F
Sbjct: 113 VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWN---AMLSGFAQNGFV 169
Query: 184 ARA-SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
A ++D L + L +V +G I+ + + ++ I L+ Y
Sbjct: 170 EEARKIFD----QMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF--------FFFVSLLS 293
A F+ M R+ ISW ++I+ ++Q G+L E R F F + +++S
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G +G + + F M + + + + S + +A++L D+MPS+ T W
Sbjct: 286 GFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYV-QSQQIEKARELFDQMPSRNTSS-WN 343
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLD 379
++ N A+++ + Q D
Sbjct: 344 TMVTGYAQCGNIDQAKILFDEMPQRD 369
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 28/238 (11%)
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+ D+V WN IS R G L F N S++ Y S S +
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVF----NGMRRRSTVTYNAMISGYLSNNKFD---- 108
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGI-ESSIQIGKALVTMYAEGGS 247
+V P D+ + ++ Y+K G N + E + A+++ +A+ G
Sbjct: 109 CARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHS 298
++A F+ M +N ISW L+SA+ Q G +E R F + L+ G
Sbjct: 169 VEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228
Query: 299 GPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ + F M + + M+ +GLL EA++L +E+P + W A++
Sbjct: 229 KRLDDARSLFDRMPVRDKISWNI-MITGYAQNGLLSEARRLFEELPIRDV-FAWTAMV 284
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 163/380 (42%), Gaps = 94/380 (24%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW------------ 121
+HG V + F SD + + +DM+ KCG + A F RML + CW
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213
Query: 122 ------------------------------------KFGIIRLLIMFQKMPERDLVSWNT 145
+ I R ++F +M ER+ +SWN+
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNS 273
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
M+S T++G + L F ++ + + SA + + G LH+ V+ +
Sbjct: 274 MLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK 333
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL-----MSR 260
+D + + ++DMY+KCG D A E+ +
Sbjct: 334 MDIDTTLRNAIMDMYMKCG-------------------------DLDTAVEMFNNCELGE 368
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHY 307
R++ SW VLIS + G ++ F F S+LS CSH+G + +G+
Sbjct: 369 RDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKC 428
Query: 308 FTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
F M K + ++ CMVD+LG +G L EA +LI ++PS+P+ +WGALL AC H N
Sbjct: 429 FADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGN 488
Query: 365 TKLAELVMRNLLQLDVKVFG 384
T+L E+ NL QL+ + G
Sbjct: 489 TELGEIAANNLFQLEPEHTG 508
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 26/194 (13%)
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
NTM+ G +E + +I + G G+++ Y AS +G +H +VV
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALVTMYAEGGSTQKADLA 254
D+FV + L+DMY KCG G + + A++T+Y + KA +
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220
Query: 255 FELMSRR----NMISWMVLISAFSQAG----VLEKPRFFF---------FFVSLLSGCSH 297
F M + I+ + + SA Q G + + R F + S+LSG +
Sbjct: 221 FRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQ 280
Query: 298 SGPVTKGKHYFTAM 311
+G T F M
Sbjct: 281 NGRPTDALSLFNQM 294
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ + LH V D ++ + +DM++KCG +D A + M N
Sbjct: 313 CSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTA----VEMFNNC---- 364
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++ ERD+ SWN +IS HG G E L F + G + + + +
Sbjct: 365 ------------ELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSI 412
Query: 182 FSA 184
SA
Sbjct: 413 LSA 415
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 124/449 (27%), Positives = 190/449 (42%), Gaps = 96/449 (21%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLI-----SSIFLQL-------IDDDYRVFCDIGPRYL 49
K C ++K L +KIH+QLI T L +S L I+ Y VF I +
Sbjct: 30 KNCTTMKDL---KKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNI 86
Query: 50 FTYNTMINGGVRCLCVGN-----IKMAL----------------------------HLHG 76
F +NT+I G R N I M L LHG
Sbjct: 87 FAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHG 146
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI------ 130
+ K +D I + + M+V CG A F R ++ + W I+ +
Sbjct: 147 KMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDE 206
Query: 131 ---MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F KM R+ VSWN+MIS R+G F+ L F ++ S + +A A
Sbjct: 207 SRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACAC 266
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ + G +H +V + L+ V + +IDMY KCG I+ ++Q+
Sbjct: 267 LGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCG--SIDKAVQV------------- 311
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
F+ RR + W +I + G + F F+++L+
Sbjct: 312 -------FQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTA 364
Query: 295 CSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C H+G V K K YF M K+ +F CMVD+LG +GLL EA++LI M P +
Sbjct: 365 CDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIRSMHVDPDAI 424
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLD 379
IWG+LL +CC + N K+A+ +L++L+
Sbjct: 425 IWGSLLWSCCKYGNIKMAKRAANHLIELN 453
>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
Length = 533
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 152/332 (45%), Gaps = 60/332 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G++K A +HG + + + + S + MH KCG + A
Sbjct: 72 LGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKAR----------------- 114
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
++F M ERD++SWN+M+S T++G E L F E+ + + + SA
Sbjct: 115 -----LVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSA 169
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A + G H +V +D + + L+DMY KCG +E ++ + +
Sbjct: 170 CAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCG--DLEKAVDLFNGIPP---- 223
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVS 290
+ RN SW VLIS + G LE +P F F S
Sbjct: 224 --------------TERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTF-TS 268
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+LS CSH+G + +G+ F M + + T + C+VD+LG +GLL EA LI EMPS P
Sbjct: 269 ILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPP 328
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ +WGALL AC H N +L + NLLQL+
Sbjct: 329 SDGVWGALLLACKIHGNMELGKTAASNLLQLE 360
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 25/173 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN-HGFGLSSMLYATAFSARASVY 189
+F +M +DLV W MI+ + E L F ++ G S+ + SA +
Sbjct: 14 IFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLG 73
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D++ +H ++ VG+ ++ M+ KC G+T+
Sbjct: 74 DVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKC----------------------GNTE 111
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVT 302
KA L F++M R++ISW ++S ++Q G + F + PVT
Sbjct: 112 KARLVFDMMMERDVISWNSMLSGYTQNG--QATEALLLFDEMRDSDCQPTPVT 162
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 167/354 (47%), Gaps = 52/354 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + M +HG + D + S IDM+VKCG + A F +M+ + W
Sbjct: 191 CADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASW 250
Query: 122 --------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
K G I + +F++M R++VSW MIS T++GF + L F E+ G
Sbjct: 251 NALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSE 310
Query: 173 LSS--MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ + + A A LE G +H D G GL + S
Sbjct: 311 MKPNWVTIVSVLPACAQSAALERGRRIH----------DFANGIGL----------HLNS 350
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGV-LEKPRFF-- 285
S+Q AL MYA+ S +A F+++++ +N+I+W +I+A++ G +E F
Sbjct: 351 SVQT--ALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 408
Query: 286 ----------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSG 331
F+ LLSGCSHSG + G ++F M ++ C+VDLLG +G
Sbjct: 409 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 468
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
L EAK+LI +MP + +WGALL AC SH N ++AEL R L L+ G+
Sbjct: 469 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGN 522
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 137/352 (38%), Gaps = 71/352 (20%)
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
F F++ + K H + +AFL +++ + +++F ++
Sbjct: 84 FQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSS 143
Query: 141 VSWNTMISILTRHGFGFETLCT--------FIELWNHGFGLSSMLYATAFSARASVYDLE 192
+ +N++I TRHG F+ L F L +L + A +R +
Sbjct: 144 LLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCM---- 199
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALVTMYA 243
G +H + + + D +VG+ LIDMY+KCG G I + AL+ Y
Sbjct: 200 -GRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYM 258
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------FF 288
+ G A+ FE M RN++SW +IS ++Q G E+ F
Sbjct: 259 KEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTI 318
Query: 289 VSLLSGCSHSGPVTKGK--HYF-------------TAMAKFTYTCYFV----CMVDLLGL 329
VS+L C+ S + +G+ H F TA+A CY + C D++
Sbjct: 319 VSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQ 378
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+G K LI W ++ A SH A + N+L+ V+
Sbjct: 379 NG-----KNLI----------AWNTMITAYASHGCGVEAVSIFENMLRAGVQ 415
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 150/341 (43%), Gaps = 63/341 (18%)
Query: 58 GGVRCLCVGN--IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115
G V C G + + +HG V K D + + IDM+ KCG + AE
Sbjct: 477 GSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEK------- 529
Query: 116 PSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
+ +++ ER VSWN++IS + G L F + G +
Sbjct: 530 ---------------IHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDN 574
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
YAT A++ +E G +H +++ ++ DV++ S ++DMY KCG
Sbjct: 575 FTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCG----------- 623
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------- 286
+ Q + + FE +R+ ++W +I A++ G+ E F
Sbjct: 624 -----------NMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVK 672
Query: 287 ----FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKK 338
F+S+L C+H G V KG HYF M ++ CMVDLLG SG + EA +
Sbjct: 673 PNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALE 732
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LI+ MP + VIW LLG C N ++AE +LLQLD
Sbjct: 733 LIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLD 773
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 135/344 (39%), Gaps = 68/344 (19%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
+F + YL ++G + C + + LHGL K + +A + +DM+
Sbjct: 358 EIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMY 417
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
KCGA ++ ++F M +D VSWN +I+ ++
Sbjct: 418 AKCGA----------------------LMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVE 455
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
ETL F+ + + + A A L +G +H RV+ LD FVGS +I
Sbjct: 456 ETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAII 515
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS--- 274
DMY KCG M E A+ E + R +SW +IS FS
Sbjct: 516 DMYCKCG----------------MLVE------AEKIHERLEERTTVSWNSIISGFSSEK 553
Query: 275 -------------QAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFT-YTCYF 320
Q GV+ F + ++L C++ V GK + K ++ +
Sbjct: 554 QGENALSYFSRMLQVGVIPDN---FTYATVLDICANLATVELGKQIHGQILKLQLHSDVY 610
Query: 321 VC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ +VD+ G + +++ + ++ P K V W A++ A H
Sbjct: 611 IASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAYH 653
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 135/334 (40%), Gaps = 45/334 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + L +H L + F SD + +DM+ C +D+A ++FC
Sbjct: 180 CTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHA---------FNIFC- 229
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+MPER+ V W+ +I+ R+ E L + + + G G+S +A+A
Sbjct: 230 ------------EMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASA 277
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
F + A + E G LH+ + D VG+ +DMY KC + + K T
Sbjct: 278 FRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKC-----DRMVDARKVFNTF 332
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSL---LSGCSHS 298
+ Q + +R++ + + A L+K F +SL L+ CS
Sbjct: 333 --PNPTRQSHNALIVGYARQDQV-----LEALEIFRSLQKSYLDFDEISLSGALTACSAI 385
Query: 299 GPVTKG--KHYFTAMAKFTYT-CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
+G H + C ++D+ G L EA + D+M K V W A+
Sbjct: 386 KGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDA-VSWNAI 444
Query: 356 LGA--CCSHYNTKLAELV--MRNLLQLDVKVFGS 385
+ A H LA V +R+ ++ D FGS
Sbjct: 445 IAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGS 478
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 91/236 (38%), Gaps = 42/236 (17%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
+C + I H + FV ++ + + KC ++YA + F +M +
Sbjct: 47 KCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVIS 106
Query: 121 WK---FGIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W FG + +F MPERD+VSWN+M+S ++GF +++ F ++
Sbjct: 107 WNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEI 166
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+A A + D G +H + M DV G+ L+DMY C
Sbjct: 167 QHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTC-------- 218
Query: 232 IQIGKALVTMYAEGGSTQKADLAFEL---MSRRNMISWMVLISAFSQAGVLEKPRF 284
+K D AF + M RN + W +I AG + RF
Sbjct: 219 -----------------KKLDHAFNIFCEMPERNSVCWSAVI-----AGYVRNDRF 252
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 81/439 (18%), Positives = 150/439 (34%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+KAC ++ + ++H I S + + +D + +FC++ R
Sbjct: 177 LKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNS 236
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++ +I G VR C + ++ LH
Sbjct: 237 VCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAY 296
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K F D + +++DM+ KC + A F NP+
Sbjct: 297 ALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTR------------------- 337
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
S N +I R E L F L + + A +A +++ G L
Sbjct: 338 ---QSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQL 394
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H V ++ V + ++DMY KC G+ +A L F+
Sbjct: 395 HGLAVKCGLDFNICVANTILDMYAKC----------------------GALMEACLIFDD 432
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKG 304
M ++ +SW +I+A Q +E+ F F S++ C+ + G
Sbjct: 433 MEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYG 492
Query: 305 KHYFTAMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+ K +FV ++D+ G+L EA+K+ + + + T V W +++ S
Sbjct: 493 MEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTT-VSWNSIISGFSS 551
Query: 362 HYNTKLAELVMRNLLQLDV 380
+ A +LQ+ V
Sbjct: 552 EKQGENALSYFSRMLQVGV 570
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 153/335 (45%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ L +H + + D SI + ++++ +CG + A S+F
Sbjct: 456 CAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF----------- 504
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+++ +D ++WN ++S + G E L F+ + G + + +A
Sbjct: 505 -----------EEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ +++ G +H+RV+ S + VG+ LI +Y KC
Sbjct: 554 LSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKC------------------ 595
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
GS + A + F MS RN +SW +I++ SQ G LE F F
Sbjct: 596 ----GSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTF 651
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ +L+ CSH G V +G YF +M+ ++ C++D+ G +G L AKK I+EMP
Sbjct: 652 IGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMP 711
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++W LL AC H N ++ E ++LL+L+
Sbjct: 712 IAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELE 746
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 139/329 (42%), Gaps = 64/329 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY ++ C C I + +H L K F SD ++ IDM+ K G ++ A
Sbjct: 346 FTYPCILRT---CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR-- 400
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
R+L M + E+D+VSW +MI+ +H + L F E+
Sbjct: 401 -----------------RVLEMLK---EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ A+A S A + + G +H+R+ S DV + + L+++Y +C
Sbjct: 441 GIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARC------ 494
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF--- 285
G ++A +FE + ++ I+W L+S F+Q+G+ E+ + F
Sbjct: 495 ----------------GRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRM 538
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLL 333
F FVS LS ++ + +GK + K + T ++ L G G
Sbjct: 539 DQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSF 598
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+AK EM S+ V W ++ +C H
Sbjct: 599 EDAKMEFSEM-SERNEVSWNTIITSCSQH 626
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 125/305 (40%), Gaps = 61/305 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H K F S+ + + I ++++CG+ AE +FC
Sbjct: 165 IHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER---------VFC------------- 202
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
MP RD V++NT+IS + G G L F E+ G + ++ +A AS+ DL+
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G LHS + S D + L+D+Y+KCG +E+++ I
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCG--DVETALVI------------------- 301
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGP 300
F R N++ W +++ AF Q L K F F + +L C+ +
Sbjct: 302 -FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360
Query: 301 VTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ G+ H + F Y ++D+ G L +A++++ EM + V W +++
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIA 419
Query: 358 ACCSH 362
H
Sbjct: 420 GYVQH 424
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 97/269 (36%), Gaps = 76/269 (28%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRC--------------------------------LCVG 66
RVFCD+ R T+NT+I+G +C +G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+++ LH + K SD + S +D++VKCG V+ A
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETA-------------------- 298
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
L++F ++V WN M+ + ++ F ++ G + Y
Sbjct: 299 --LVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+++ G +HS V D++V LIDMY K G
Sbjct: 357 CTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW--------------------- 395
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQ 275
+KA E++ ++++SW +I+ + Q
Sbjct: 396 -LEKARRVLEMLKEKDVVSWTSMIAGYVQ 423
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 37/243 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+++ RD VSW M+S ++G G E L + ++ G + + ++ S+
Sbjct: 99 VFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAEL 158
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H++ ++FVG+ +I +YL+C GS +
Sbjct: 159 FAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRC----------------------GSFRL 196
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRFF------FFFVSLLSGCSH 297
A+ F M R+ +++ LIS +Q G + E+ +F SLL+ C+
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKK--LIDEMPSKPTCVIWGAL 355
G + KG + + K + ++ LL L G+ + +I + V+W +
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316
Query: 356 LGA 358
L A
Sbjct: 317 LVA 319
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 39/173 (22%)
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ-- 275
+++ K G+ +G L+ +Y++ G A FE +S R+ +SW+ ++S ++Q
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 276 --------------AGVLEKPRFFFFFVSLLSGCSHSGPVTKG--------KHYFTA--- 310
AGV+ P + S+LS C+ + +G KH F +
Sbjct: 123 LGEEALGLYRQMHRAGVVPTP---YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIF 179
Query: 311 MAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG-ACCSH 362
+ T Y C G A+++ +MP + T + G A C H
Sbjct: 180 VGNAVITLYLRC--------GSFRLAERVFCDMPHRDTVTFNTLISGHAQCGH 224
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 148/324 (45%), Gaps = 62/324 (19%)
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
++ + V D + +DM+ K +D A+ +F +P+R
Sbjct: 297 RRGWDVGDIIAGNAMVDMYAKMSKIDAAQK----------------------VFDNLPDR 334
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHL 197
D+VSWNT+I+ ++G E + + ++ NH G + + A + + L+ G +
Sbjct: 335 DVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRM 394
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ + +LDV+V + LID+Y KCG K + M+ FE
Sbjct: 395 HALSIKTGLNLDVYVTTCLIDLYAKCG-----------KLVEAMFL-----------FEH 432
Query: 258 MSRRNMISWMVLI-------------SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKG 304
M RR+ W +I S FSQ E FVSLL+ CSH+G V +G
Sbjct: 433 MPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQG 492
Query: 305 KHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+ +F M ++ CMVD+LG +G L EA + I MP KP +WGALLGAC
Sbjct: 493 RSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACR 552
Query: 361 SHYNTKLAELVMRNLLQLDVKVFG 384
H N ++ ++ +NL +LD + G
Sbjct: 553 IHGNVEMGKVASQNLFELDPENVG 576
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 88/417 (21%), Positives = 156/417 (37%), Gaps = 95/417 (22%)
Query: 16 IHAQLISTCLISSIFLQL--IDDDYRVFCDIGPRYLFTYNTMINGGVR------------ 61
+H + ++ + +L+ + + YRVF ++ R + +N M++G R
Sbjct: 98 LHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLG 157
Query: 62 --------------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG 101
C+ +G+ +AL +H K + + + ID++ K G
Sbjct: 158 RMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLG 217
Query: 102 AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
+ A W FG + L RDLV+WN++IS + G +
Sbjct: 218 MLTEAH-------------WVFGGMAL---------RDLVTWNSIISANEQGGKVAAAVE 255
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F + G + + SA A + G L ++ VH +V D+
Sbjct: 256 LFHGMMESGVCPDVLTLVSLASAVA-----QCGDELGAKSVH------CYVRRRGWDV-- 302
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
I G A+V MYA+ A F+ + R+++SW LI+ + Q G+ +
Sbjct: 303 --------GDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANE 354
Query: 282 PRFFF--------------FFVSLLSGCSHSGPVTKG--KHYFTAMAKFTYTCYF-VCMV 324
+ FVS+L S+ G + +G H + Y C++
Sbjct: 355 AIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLI 414
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
DL G L EA L + MP + T W A++ H + A + + Q ++K
Sbjct: 415 DLYAKCGKLVEAMFLFEHMPRRSTGP-WNAIIAGLGVHGHGAKALSLFSQMQQEEIK 470
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 104/272 (38%), Gaps = 49/272 (18%)
Query: 111 LRMLNPSLFC--------WKFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
L +L+P++F +FG + +F +MPERD+ +WN M+S L R+ + +
Sbjct: 95 LGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVT 154
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
+ G ++ ++ + D +H V S ++FV + LID+Y
Sbjct: 155 LLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYG 214
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
K G M E A F M+ R++++W +ISA Q G +
Sbjct: 215 KLG----------------MLTE------AHWVFGGMALRDLVTWNSIISANEQGGKVAA 252
Query: 282 PRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV----CMV 324
F VSL S + G K + + + + MV
Sbjct: 253 AVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMV 312
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
D+ + A+K+ D +P + V W L+
Sbjct: 313 DMYAKMSKIDAAQKVFDNLPDR-DVVSWNTLI 343
>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 676
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 168/382 (43%), Gaps = 66/382 (17%)
Query: 17 HAQLIS-TCLISSIFL-QLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGN--IKMAL 72
H +I+ T +IS + +L +D R+FC + R L N++ C G+ I
Sbjct: 218 HRNVITWTAVISGLIENELHEDGLRLFC-LMRRGLVHPNSVTYLSALAACSGSQMIVEGQ 276
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L+ KF S+ I + +DM+ KCG+++ A WK +F
Sbjct: 277 QIHALLWKFGIESELCIESALMDMYSKCGSIEDA--------------WK--------IF 314
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+ E D VS ++ L ++G E + FI + G + + + + L
Sbjct: 315 ESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLG 374
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G LHS V+ + + FV +GLI+MY KCG +
Sbjct: 375 LGKQLHSLVIKRKFCGNTFVNNGLINMYSKCG----------------------DLTDSQ 412
Query: 253 LAFELMSRRNMISWMVLISAFSQAG-------------VLEKPRFFFFFVSLLSGCSHSG 299
F M +RN +SW +I+AF++ G LE F+SLL CSH G
Sbjct: 413 TVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVG 472
Query: 300 PVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
+ KG+ M + T ++ C++D+LG +GL+ EAK ID +P KP C IW AL
Sbjct: 473 LIDKGRELLNEMKEVHGIKPRTEHYTCIIDMLGRAGLMKEAKSFIDSLPLKPDCKIWQAL 532
Query: 356 LGACCSHYNTKLAELVMRNLLQ 377
LGAC H +T++ E L +
Sbjct: 533 LGACSFHGDTEVGEYAAEQLFE 554
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+G + I +G L+T Y + G + F M+ RN+I+W +IS + + E
Sbjct: 184 SGYDKEISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRL 243
Query: 286 F-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGL 329
F ++S L+ CS S + +G+ + KF + C ++D+
Sbjct: 244 FCLMRRGLVHPNSVTYLSALAACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSK 303
Query: 330 SGLLGEAKKLID 341
G + +A K+ +
Sbjct: 304 CGSIEDAWKIFE 315
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 173/396 (43%), Gaps = 88/396 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+KAC S+ + ++IHA +I S I+ T N+++N
Sbjct: 125 LKACSSMSASEETQQIHAHIIKMGFGSEIY--------------------TTNSLLNVYS 164
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
+ G+IK A L V + VS S+ ID + KCG ++ A
Sbjct: 165 KS---GDIKSARLLFDQVDQRDTVSWNSM----IDGYTKCGEIEMAYE------------ 205
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+F MPER+++SW +MIS G E L F + G L ++ +
Sbjct: 206 ----------IFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVS 255
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A A + L+ G +H+ + E +D +G LIDMY KCG +E +I++
Sbjct: 256 TLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCG--DLEEAIEV------ 307
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
F M + + W +IS ++ G + +F
Sbjct: 308 --------------FRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMT 353
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
F +L+ CSH+G V + K F +M + ++ CMVDLLG +GLL EA++LI+ M
Sbjct: 354 FTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENM 413
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P KP IWGALL AC H N +L + + + L+Q+D
Sbjct: 414 PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 127/331 (38%), Gaps = 57/331 (17%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM--HVKCGAVDYAESAFLRMLNPSL 118
RC N++ +HG + K + DE A + G++ YA + F R+ P+
Sbjct: 27 RC---SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
F WNTMI + E L + + H ++ +
Sbjct: 84 FM----------------------WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI----QI 234
A +S+ E +H+ ++ M +++ + L+++Y K G I+S+ Q+
Sbjct: 122 PFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSG--DIKSARLLFDQV 179
Query: 235 GK-------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
+ +++ Y + G + A F M RN+ISW +IS AG ++ F
Sbjct: 180 DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFH 239
Query: 288 -------------FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSG 331
VS L C+ G + +GK H + + C ++D+ G
Sbjct: 240 RMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCG 299
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
L EA ++ +M K V W A++ H
Sbjct: 300 DLEEAIEVFRKMEEKGVSV-WTAMISGYAIH 329
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 167/370 (45%), Gaps = 63/370 (17%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ ++ V L V M +HGL+ + D +A S I ++ KCG ++ A
Sbjct: 172 FTFPFVLKSSVELLSVW---MGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKV 228
Query: 110 FLRMLNPSLFCW--------KFGIIRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M + W K G I L +F++MP R++VSW TMIS ++ G + L
Sbjct: 229 FDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQAL 288
Query: 161 CTFIELWNHGFGLSS--MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
F E+ G+ + + A A + LE G +H M
Sbjct: 289 SLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRM-------------- 334
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFS-- 274
G+ S+ + AL MYA+ GS A F+ ++R +N+I+W +I+A++
Sbjct: 335 --------GLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASY 386
Query: 275 --------------QAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-- 318
QAG+ F LLSGCSHSG V G YF M+ TY+
Sbjct: 387 GHGLQAVSTFREMIQAGIQPDD---ITFTGLLSGCSHSGLVDVGLKYFNHMST-TYSINP 442
Query: 319 ---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ C+ DLLG +G L EA KL+ EMP IWG+LL AC H N ++AE R L
Sbjct: 443 RVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKL 502
Query: 376 LQLDVKVFGS 385
L+ + G+
Sbjct: 503 FVLEPENTGN 512
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 119/281 (42%), Gaps = 32/281 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + E + +N+MI R+GF T+ T+ + H +G + + F ++SV
Sbjct: 127 VFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSM--HSWGFTGDYFTFPFVLKSSVEL 184
Query: 191 LE-W-GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALV 239
L W G +H ++ + D++V + LI +Y KCG N + AL+
Sbjct: 185 LSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALL 244
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
Y + G A FE M RN++SW +IS +SQ+G+ ++ F
Sbjct: 245 AGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPN 304
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFT---AMAKFTYTCYFVCMVDLLGLSGLLGEAKKLID 341
+S+L C+ + +G+ M + + + + G L +A+ D
Sbjct: 305 WVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFD 364
Query: 342 EMP-SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
++ ++ + W ++ A S+ + A R ++Q ++
Sbjct: 365 KLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQ 405
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 153/335 (45%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ L +H + + D SI + ++++ +CG + A S+F
Sbjct: 456 CAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF----------- 504
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+++ +D ++WN ++S + G E L F+ + G + + +A
Sbjct: 505 -----------EEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ +++ G +H+RV+ S + VG+ LI +Y KC
Sbjct: 554 LSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKC------------------ 595
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
GS + A + F MS RN +SW +I++ SQ G LE F F
Sbjct: 596 ----GSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTF 651
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ +L+ CSH G V +G YF +M+ ++ C++D+ G +G L AKK I+EMP
Sbjct: 652 IGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMP 711
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++W LL AC H N ++ E ++LL+L+
Sbjct: 712 IAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELE 746
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 137/329 (41%), Gaps = 64/329 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY ++ C C I + +H L K F SD ++ IDM+ K G ++ A
Sbjct: 346 FTYPCILRT---CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR-- 400
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
R+L M + E+D+VSW +MI+ +H + L F E+
Sbjct: 401 -----------------RVLEMLK---EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ A+A S A + + G +H+R+ +G
Sbjct: 441 GIWPDNIGLASAISGCAGINAMRQGLQIHARIY----------------------VSGYS 478
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF--- 285
+ I ALV +YA G ++A +FE + ++ I+W L+S F+Q+G+ E+ + F
Sbjct: 479 GDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRM 538
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLL 333
F FVS LS ++ + +GK + K + T ++ L G G
Sbjct: 539 DQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSF 598
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+AK EM S+ V W ++ +C H
Sbjct: 599 EDAKMEFSEM-SERNEVSWNTIITSCSQH 626
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 125/305 (40%), Gaps = 61/305 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H K F S+ + + I ++++CG+ AE +FC
Sbjct: 165 IHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER---------VFC------------- 202
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
MP RD V++NT+IS + G G L F E+ G + ++ +A AS+ DL+
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G LHS + S D + L+D+Y+KCG +E+++ I
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCG--DVETALVI------------------- 301
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGP 300
F R N++ W +++ AF Q L K F F + +L C+ +
Sbjct: 302 -FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360
Query: 301 VTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ G+ H + F Y ++D+ G L +A++++ EM + V W +++
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIA 419
Query: 358 ACCSH 362
H
Sbjct: 420 GYVQH 424
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 97/269 (36%), Gaps = 76/269 (28%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRC--------------------------------LCVG 66
RVFCD+ R T+NT+I+G +C +G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+++ LH + K SD + S +D++VKCG V+ A
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETA-------------------- 298
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
L++F ++V WN M+ + ++ F ++ G + Y
Sbjct: 299 --LVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+++ G +HS V D++V LIDMY K G
Sbjct: 357 CTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW--------------------- 395
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQ 275
+KA E++ ++++SW +I+ + Q
Sbjct: 396 -LEKARRVLEMLKEKDVVSWTSMIAGYVQ 423
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 37/243 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+++ RD VSW M+S ++G G E L + ++ G + + ++ S+
Sbjct: 99 VFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAEL 158
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H++ ++FVG+ +I +YL+C GS +
Sbjct: 159 FAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRC----------------------GSFRL 196
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRFF------FFFVSLLSGCSH 297
A+ F M R+ +++ LIS +Q G + E+ +F SLL+ C+
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKK--LIDEMPSKPTCVIWGAL 355
G + KG + + K + ++ LL L G+ + +I + V+W +
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316
Query: 356 LGA 358
L A
Sbjct: 317 LVA 319
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+++ K G+ +G L+ +Y++ G A FE +S R+ +SW+ ++S ++Q G
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 278 VLEK 281
+ E+
Sbjct: 123 LGEE 126
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 179/409 (43%), Gaps = 83/409 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KAC L +H + S +F+Q + RVF D+ R +
Sbjct: 83 IKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDV 142
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA--KSSIDMHVKCGAVDYAE 107
F + TMI+ VR G++ A L F + ++++A + ID + K G + AE
Sbjct: 143 FAWTTMISAHVR---DGDMASAGRL------FDEMPEKNVATWNAMIDGYGKLGNAESAE 193
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
+F +MP RD++SW TM++ +R+ E + F ++
Sbjct: 194 ----------------------FLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVI 231
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ G + T SA A + L G +H +V LDV++GS LIDMY KC
Sbjct: 232 DKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKC---- 287
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
GS A L F + +N+ W +I + G +E+ F
Sbjct: 288 ------------------GSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFG 329
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLS 330
F+S+L+ C+H+G + +G+ +F +M + ++ CMVDLL +
Sbjct: 330 EMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKA 389
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
GLL +A ++I M +P IWGALL C H N ++A + ++NL+ L+
Sbjct: 390 GLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLE 438
>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
Length = 630
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/445 (25%), Positives = 190/445 (42%), Gaps = 104/445 (23%)
Query: 1 MKACGSLKSLPIARK-----IHAQLISTCLISSIFLQLI------DDDYRVFCDIGPRYL 49
++ C +SL + + IH L++ + +I + L D RVF + R +
Sbjct: 63 LQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSI 122
Query: 50 FTYNTMINGGVR----------------------------CLCVGNIKMAL----HLHGL 77
++NTMI G LC K A+ LH +
Sbjct: 123 ISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTI 182
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K S + + +D++ KC + A CW +F+ MPE
Sbjct: 183 AIKLALDSSSFVGTAFLDVYAKCNMIKDA-------------CW---------VFENMPE 220
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+ V+W+++ + ++G E LC F G L+ ++ S AS+ + G +
Sbjct: 221 KTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQV 280
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ +V ++FV + L+D+Y KCG IE S ++ F
Sbjct: 281 HAVIVKHGFHRNLFVATSLVDVYAKCG--QIEKSYEV--------------------FAD 318
Query: 258 MSRRNMISWMVLISAFSQAG-------VLEKPRFFFFF------VSLLSGCSHSGPVTKG 304
M +N++ W +I++FS+ + EK + F +S+LS CSH+G V +G
Sbjct: 319 MEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEG 378
Query: 305 KHYFTAM----AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+HYF + ++ CMVD+LG SG EA KL+D+MP +PT +WG+LLG+
Sbjct: 379 RHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSR 438
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
H N +LA + L +L+ + G+
Sbjct: 439 IHKNIRLARIAAEQLFRLEPENGGN 463
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 165/358 (46%), Gaps = 45/358 (12%)
Query: 46 PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105
P +T+ ++ L +G AL +HGLV K F SD + + ++ CG +
Sbjct: 85 PHNSYTFPFLLRACRNLLAMGE---ALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHC 141
Query: 106 AESAFLRMLNPSLFCW--------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFG 156
A F + W K G ++ +F MP +++VSW ++IS L G
Sbjct: 142 ARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQS 201
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L E+ N GF L + A+ +A A++ L+ G LH V++ +D +G L
Sbjct: 202 VEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCAL 261
Query: 217 IDMYLKCG-----------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
++MY+KCG G + + I A++ +A G +A F M R +
Sbjct: 262 VNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGI-- 319
Query: 266 WMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFV 321
+P F ++L CS+ G V +GK F +M F ++
Sbjct: 320 ---------------RPNSITF-TAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYG 363
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
CMVDLLG SG L EAK+LI +MP KP+ VIWGALL AC H + L V +L+++D
Sbjct: 364 CMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVD 421
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 167/354 (47%), Gaps = 52/354 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + M +HG + D + S IDM+VKCG + A F +M+ + W
Sbjct: 117 CADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASW 176
Query: 122 --------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
K G I + +F++M R++VSW MIS T++GF + L F E+ G
Sbjct: 177 NALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSE 236
Query: 173 LSS--MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ + + A A LE G +H D G GL + S
Sbjct: 237 MKPNWVTIVSVLPACAQSAALERGRRIH----------DFANGIGL----------HLNS 276
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGV-LEKPRFF-- 285
S+Q AL MYA+ S +A F+++++ +N+I+W +I+A++ G +E F
Sbjct: 277 SVQT--ALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 334
Query: 286 ----------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSG 331
F+ LLSGCSHSG + G ++F M ++ C+VDLLG +G
Sbjct: 335 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 394
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
L EAK+LI +MP + +WGALL AC SH N ++AEL R L L+ G+
Sbjct: 395 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGN 448
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 151/335 (45%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +K+ LH K + + + +DM+ KCG +D +
Sbjct: 459 CASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSH-------------- 504
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F K+ +D V+WN+MIS ++G E L F E+ G S++ ++
Sbjct: 505 --------YIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSV 556
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA AS+ + +G +H V+ D+F S LIDMY KCG
Sbjct: 557 LSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCG----------------- 599
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
+ + A FE M +N +SW +I+++ G++++ F
Sbjct: 600 -----NLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTF 654
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMP 344
++L+S C+H+G V +G F M + +F CMVDL +G L +A +LI +MP
Sbjct: 655 LALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMP 714
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
KP IWGALL AC H N +LAE+ + L +LD
Sbjct: 715 FKPDAGIWGALLHACRVHRNVELAEIASQELFKLD 749
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/436 (20%), Positives = 166/436 (38%), Gaps = 96/436 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+K+C +L ++ + R +H + L +F+ L+ D +VF + R
Sbjct: 153 VKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDC 212
Query: 50 FTYNTMINGGVRCLCV-------GNIKMA-------------------------LHLHGL 77
+N M++G V+ V G+++ + + LH L
Sbjct: 213 VLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTL 272
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K+ S+ ++A + + M+ KC +D WK +F MP
Sbjct: 273 AVKYGLESEVAVANTLVSMYAKCKCLDDG--------------WK--------LFGLMPR 310
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
DLV+WN MIS ++GF + L F ++ G S+ + A + G L
Sbjct: 311 DDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKEL 370
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ---------IGKALVTMYAEGGST 248
H +V +DVF+ S L+D+Y KC + S+ IG +++ Y G +
Sbjct: 371 HGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMS 430
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYF 308
Q+A F + + + V I+ S+L C+ + G+
Sbjct: 431 QEAVKMFRYLLEQGIRPNAVAIA------------------SVLPACASMAAMKLGQELH 472
Query: 309 TAMAKFTYT--CYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
+ K Y CY ++D+ G L + + ++ +K V W +++ + +
Sbjct: 473 SYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDE-VTWNSMISSFAQNGEP 531
Query: 366 KLAELVMRNLLQLDVK 381
+ A + R + VK
Sbjct: 532 EEALNLFREMCMEGVK 547
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 151/335 (45%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +K+ LH K + + + +DM+ KCG +D +
Sbjct: 459 CASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSH-------------- 504
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F K+ +D V+WN+MIS ++G E L F E+ G S++ ++
Sbjct: 505 --------YIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSV 556
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA AS+ + +G +H V+ D+F S LIDMY KCG
Sbjct: 557 LSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCG----------------- 599
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
+ + A FE M +N +SW +I+++ G++++ F
Sbjct: 600 -----NLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTF 654
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMP 344
++L+S C+H+G V +G F M + +F CMVDL +G L +A +LI +MP
Sbjct: 655 LALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMP 714
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
KP IWGALL AC H N +LAE+ + L +LD
Sbjct: 715 FKPDAGIWGALLHACRVHRNVELAEIASQELFKLD 749
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 89/436 (20%), Positives = 166/436 (38%), Gaps = 96/436 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+K+C +L ++ + R +H + L +F+ L+ D +VF + R
Sbjct: 153 VKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDC 212
Query: 50 FTYNTMINGGVRCLCV-------GNIKMA-------------------------LHLHGL 77
+N M++G V+ V G+++ + + LH L
Sbjct: 213 VLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTL 272
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K+ S+ ++A + + M+ KC +D WK +F MP
Sbjct: 273 AVKYGLESEVAVANTLVSMYAKCKCLDDG--------------WK--------LFGLMPR 310
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
DLV+WN MIS ++GF + L F ++ G S+ + A + G L
Sbjct: 311 DDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKEL 370
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ---------IGKALVTMYAEGGST 248
H +V +DVF+ S L+D+Y KC + S+ IG +++ Y G +
Sbjct: 371 HGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMS 430
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYF 308
Q+A F + + + V I+ S+L C+ + G+
Sbjct: 431 QEAVKMFRYLLEQGIRPNAVAIA------------------SVLPACASMAAMKLGQELH 472
Query: 309 TAMAKFTYT--CYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
+ K Y CY ++D+ G L + + ++ +K V W +++ + +
Sbjct: 473 SYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDE-VTWNSMISSFAQNGEP 531
Query: 366 KLAELVMRNLLQLDVK 381
+ A + R + VK
Sbjct: 532 EEALNLFREMCMEGVK 547
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 156/342 (45%), Gaps = 71/342 (20%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSI-DMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
G+ + A LH V + + D+ IA ++I DM+ K ++ A+
Sbjct: 284 GDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQR---------------- 327
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFS 183
MF MP +D VSWNT+I+ ++G E + + + H G + +
Sbjct: 328 ------MFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLP 381
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A + + L+ G +H+ + + ++DV+VG+ LID+Y KC
Sbjct: 382 AYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKC-------------------- 421
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAF----------------SQAGVLEKPRFFFF 287
G +A L FE M RR+ W +IS Q G+ KP F
Sbjct: 422 --GKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGI--KPDHVTF 477
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDE 342
VSLL+ CSH+G V +G+ +F M + TY ++ CM D+LG +G L EA I
Sbjct: 478 -VSLLAACSHAGLVDQGRSFFDVM-QVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQN 535
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
MP KP +WGALLGAC H N ++ ++ +NL +LD + G
Sbjct: 536 MPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVG 577
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 88/397 (22%), Positives = 145/397 (36%), Gaps = 93/397 (23%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVR-------------------------------- 61
I + Y+VF ++ R + +N M++G R
Sbjct: 119 ISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPM 178
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ +G+ +AL +H K + + + ID++ K G ++ A+
Sbjct: 179 CVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQ-------------- 224
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F M RDLV+WN++IS + G L F + G + +
Sbjct: 225 --------CVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSL 276
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A D LH V M DV I G A+V M
Sbjct: 277 ASAIAQGGDGRSAKSLHCYV--MRRGWDV-------------------DDIIAGNAIVDM 315
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK--PRFFFF------------ 287
YA+ + + A F+ M ++ +SW LI+ + Q G+ + R+
Sbjct: 316 YAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGT 375
Query: 288 FVSLLSGCSHSGPVTKG--KHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMP 344
FVS+L SH G + +G H + Y C++DL G L EA L ++MP
Sbjct: 376 FVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP 435
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ T W A++ H + A + + Q +K
Sbjct: 436 RRSTGP-WNAIISGLGVHGHGAEALTLFSRMQQEGIK 471
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 152/342 (44%), Gaps = 50/342 (14%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF- 123
G++ + + +HG V + D + + +DM+ +C ++ A F M S+ W
Sbjct: 158 TGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSL 217
Query: 124 --GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
G+ RL +F +MPERD VSW MI + E L F E+
Sbjct: 218 LSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADE 277
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+ +A A + LE G + + +D FVG+ LIDM
Sbjct: 278 FTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDM---------------- 321
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------- 287
Y++ GS ++A F+ M R+ +W +I + G E+ F
Sbjct: 322 ------YSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSET 375
Query: 288 -----FVSLLSGCSHSGPVTKGKHYFTAMAKFTYT-----CYFVCMVDLLGLSGLLGEAK 337
F+ +L+ C+H+G V KG+ +F +M + TY ++ C++DL G +G + EA
Sbjct: 376 PDEVTFIGVLTACTHAGLVDKGREFFLSM-RETYNIAPNVVHYGCIIDLFGRAGKITEAL 434
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
ID+MP P IWG LL AC H N+++ ELV LLQ+D
Sbjct: 435 DAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMD 476
>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
Length = 502
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 144/326 (44%), Gaps = 64/326 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LHG + +++ ++ + +DM+ K G + A +F
Sbjct: 125 LHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGR----------------------VFD 162
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA--TAFSARASVYDL 191
+MPERD V+WN M++ R G ETL F + G++ L A + + A L
Sbjct: 163 EMPERDAVAWNCMVTGYARAGRSEETLELFRKAQIESAGMARDLRAVPSVLNVCADEGQL 222
Query: 192 EWGPHLHSRVVH-MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H R+ + S D VG+ LIDMY KC G
Sbjct: 223 MKGREIHGRMARCLASSSDTVVGNALIDMYGKC----------------------GQVDG 260
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSH 297
A F M +N++SW LIS + G+ E R + FVS+LS CSH
Sbjct: 261 AQAVFASMEEKNVVSWSSLISCYGVHGMGKEALRVYEEMVSVGVKPNCVTFVSILSSCSH 320
Query: 298 SGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
SG V+ G+ F +M K ++ CMVDLLG +G + EA L++EMP +P +WG
Sbjct: 321 SGLVSDGRRIFESMRKVHAVEPTADHYACMVDLLGRAGAIEEAVGLVNEMPMEPGASLWG 380
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLD 379
ALL AC H N + E+ L +L+
Sbjct: 381 ALLSACAIHNNVDVGEVAAYRLFELE 406
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 127/340 (37%), Gaps = 68/340 (20%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
RC G + LH + D ++ + ++ +CGA+ A F M +PS+
Sbjct: 15 RCAASGALSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRAREVFDGMPSPSMHA 74
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ ++ P V ++S L G L + + ++L A
Sbjct: 75 YN-------VLLAASPPDAAV---KLVSRLVASG-----------LRPDRYSVPAVLRAC 113
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A S D G LH V + G+ +++ + AL+
Sbjct: 114 AES-----RDALLGSVLHGFAVRL----------------------GLLANVVVSGALLD 146
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK---------------PRFF 285
MYA+ G+ A F+ M R+ ++W +++ +++AG E+ R
Sbjct: 147 MYAKTGTLGDAGRVFDEMPERDAVAWNCMVTGYARAGRSEETLELFRKAQIESAGMARDL 206
Query: 286 FFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLID 341
S+L+ C+ G + KG+ MA+ + T ++D+ G G + A+ +
Sbjct: 207 RAVPSVLNVCADEGQLMKGREIHGRMARCLASSSDTVVGNALIDMYGKCGQVDGAQAVFA 266
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
M K V W +L+ H K A V ++ + VK
Sbjct: 267 SMEEK-NVVSWSSLISCYGVHGMGKEALRVYEEMVSVGVK 305
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/419 (27%), Positives = 185/419 (44%), Gaps = 79/419 (18%)
Query: 14 RKIHAQLISTCLI------------SSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVR 61
+++HAQ + + L+ + + + I + +F I +F YNTMI G
Sbjct: 30 KQLHAQFVVSGLLGYHPLCARRLLEAYVTMSQIYYAFSIFERIPSPDVFVYNTMIRG--- 86
Query: 62 CLCVGN------IKMALHL---------HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
L + N +K HL H + K V D I S I M+ G++D A
Sbjct: 87 -LTMDNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDDA 145
Query: 107 E---------SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
E + + S + + + + MF M +D SW+ +I+ T++G
Sbjct: 146 ERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHT 205
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E L F ++ + + SA + L G +H+ + + + + LI
Sbjct: 206 EALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTKLTTALI 265
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
DMY K G SI+ G L F+ M+RR++++W V+ISAF+ G
Sbjct: 266 DMYAKSG------SIECGYGL----------------FQKMARRDVVTWGVMISAFAIHG 303
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYF 320
K F FV++LS CSH+G V +G+ YF+ M ++
Sbjct: 304 HASKCFQLFDEMLADGIRPNKVIFVAILSACSHAGCVEEGRQYFSQMEHGFGIKPSIEHY 363
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
CMVDLLG +GLL +A++LI MP +P +IWG+LLGAC +H + K NL++L+
Sbjct: 364 GCMVDLLGRAGLLADAEQLILSMPKQPNSIIWGSLLGACRTHNDLKRGTWAFENLMELE 422
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 148/329 (44%), Gaps = 46/329 (13%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLLI-MFQ 133
F SD + S ID++VKCG + A F M + W K+G + +F
Sbjct: 174 FASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFD 233
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+P +D+V+W M++ ++G E L F ++ + G + A SA A +
Sbjct: 234 DLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQL----- 288
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
V H D+ SG G ++ +G AL+ MY++ GS +A
Sbjct: 289 -----GAVKHANWIRDIAERSGF----------GPSGNVVVGSALIDMYSKCGSPDEAYK 333
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGP 300
FE+M RN+ S+ +I ++ G F F+ +LS CSH+G
Sbjct: 334 VFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGL 393
Query: 301 VTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V +G+ F M KF ++ CMVDLLG +G L EA L+ MP +P +WGALL
Sbjct: 394 VEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALL 453
Query: 357 GACCSHYNTKLAELVMRNLLQLDVKVFGS 385
GAC H N +A++ L +L+ G+
Sbjct: 454 GACRIHGNPDIAQIAANELFKLEPNGIGN 482
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L++F ++ + W MI G E+ + + G G S ++ F A +
Sbjct: 96 LLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAA 155
Query: 189 YDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKAL 238
+++ G +H++ + + + D++VG+ +ID+Y+KCG G E + L
Sbjct: 156 LNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTEL 215
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+ YA+ G + A F+ + ++M++W +++ ++Q G ++ +F
Sbjct: 216 IVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYF 263
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 152/345 (44%), Gaps = 63/345 (18%)
Query: 59 GVRCLCVGNIKMAL--HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP 116
G+ +C G I + LH +F D S+ + M+V+CG+VD+A
Sbjct: 164 GLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARK-------- 215
Query: 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
+F MPE+ L++WN MIS ++G L + ++ G +
Sbjct: 216 --------------LFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPV 261
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
S+ A + G H R V L F + +LK
Sbjct: 262 TLVGVLSSCAHL-----GAHAAGREVEQRIELSGFG----FNPFLK-------------N 299
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
AL+ MYA G+ KA F+ M+ +N+ISW +I+ + G E F
Sbjct: 300 ALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELP 359
Query: 287 ---FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKL 339
FVS+LS CSH+G KG +YFTAM + ++ C+VDLLG +G L EA+KL
Sbjct: 360 DGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKL 419
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
I M +P +WGALLGAC H N +LAEL +++ + G
Sbjct: 420 IGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIG 464
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/324 (20%), Positives = 124/324 (38%), Gaps = 61/324 (18%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
LHG V K + + S I M+ KC + A F
Sbjct: 77 QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVF---------------------D 115
Query: 133 QKMPERDL-VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
+ R+L V +N +I+ + + + + F ++ G ++++ A L
Sbjct: 116 ENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHL 175
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
+G LH+ V D+ VG+ L+ MY++CG S+ + L
Sbjct: 176 GFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCG------SVDFARKL------------- 216
Query: 252 DLAFELMSRRNMISWMVLISAFSQAG----VLEKPRFFFF---------FVSLLSGCSHS 298
F+ M + +I+W +IS ++Q G VL+ R F V +LS C+H
Sbjct: 217 ---FDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHL 273
Query: 299 GPVTKGKHYFT--AMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G G+ ++ F + + ++++ G L +A+ + D M K + W A+
Sbjct: 274 GAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEK-NVISWTAI 332
Query: 356 LGACCSHYNTKLAELVMRNLLQLD 379
+ H +LA + ++ D
Sbjct: 333 IAGYGMHGQGELAVQLFDEMISSD 356
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 87/233 (37%), Gaps = 39/233 (16%)
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
SWN + L R E L + ++ G ++ + AF + AS+ G LH
Sbjct: 22 ASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGH 81
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-------------GKALVTMYAEGGS 247
V+ + FV + LI MY C C+ I S+ ++ AL+ Y+
Sbjct: 82 VIKTGCEPEPFVQTSLISMY--CKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSR 139
Query: 248 TQKADLAFELMSRR----NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTK 303
A L F M + N ++ + LI V P F SL H+ V
Sbjct: 140 FSDAVLLFRQMRKEGVSVNAVTMLGLIP------VCAGPIHLGFGTSL-----HACSVRF 188
Query: 304 GKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G ++ T Y C G + A+KL D MP K + W A++
Sbjct: 189 GLDGDLSVGNCLLTMYVRC--------GSVDFARKLFDGMPEK-GLITWNAMI 232
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 180/392 (45%), Gaps = 75/392 (19%)
Query: 7 LKSLPIARKIHAQLISTCLISS-IFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCV 65
L +P R + AQ T +IS + + +DD ++F I R + +NTMI G +C
Sbjct: 318 LNQMPY-RNVAAQ---TAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQC--- 370
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G + ALHL + K VS ++ S + + G +D A
Sbjct: 371 GRMDEALHLFKQMVKKDIVSWNTMVAS----YAQVGQMDAA------------------- 407
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+ +F++M E+++VSWN++IS LT++G + L +F+ + + G +A S+
Sbjct: 408 ---IKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSC 464
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A + L+ G LH V+ + D+FV + LI MY KC
Sbjct: 465 AHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKC---------------------- 502
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLL 292
GS A+L F+ + +++SW LI+A++ G + F FV +L
Sbjct: 503 GSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGIL 562
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
S CSH G + +G F M + Y ++ CMVDLLG +G L EA +L+ M
Sbjct: 563 SACSHVGLIDQGLKLFKCMVQ-AYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINA 621
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
IWGALLGAC H N +LA+ LL+ +
Sbjct: 622 NAGIWGALLGACRIHGNLELAKFAAEKLLEFE 653
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 160/393 (40%), Gaps = 69/393 (17%)
Query: 35 DDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS- 93
D+ R+F + + L ++N+M+ G R G +++ L F +++ + +
Sbjct: 157 DEARRLFDAMPAKDLVSWNSMLTGYTRN---GEMRLGLQF------FEEMAERDVVSWNL 207
Query: 94 -IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRLLIMFQKMPERDLVSW 143
+D V+ G ++ + F ++ NP+ W +FG I +F +MP R++V+W
Sbjct: 208 MVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAW 267
Query: 144 NTMISILTRHGFGFETLCTFIEL-------WN---HGFG-----------LSSMLYATAF 182
N MI+ ++ E + F+E+ W +G+ L+ M Y
Sbjct: 268 NAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVA 327
Query: 183 SARASVYDLEWGPHL-HSRVVHMEPSL-DVFVGSGLIDMYLKCG---------CNGIESS 231
+ A + + +R + + S+ DV + +I Y +CG ++
Sbjct: 328 AQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKD 387
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFFFF--- 287
I +V YA+ G A FE M +N++SW LIS +Q G L+ + F
Sbjct: 388 IVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGH 447
Query: 288 ---------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLLGE 335
F LS C+H + GK + K Y T FV ++ + G +
Sbjct: 448 EGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISS 507
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
A+ L ++ V W +L+ A + N + A
Sbjct: 508 AELLFKDI-DHFDVVSWNSLIAAYALNGNGREA 539
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 21/188 (11%)
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
SG ID +K + + ++++ +A+ G A F+ M +RN++SW +I+A+
Sbjct: 28 SGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAY 87
Query: 274 SQAGVLEKPRFFF--------FFVSLLSGC-SHSGPVTKGKHYFTAMAKFTYTCYFVC-- 322
+E+ R F + +L+ C + +G + K ++ F + Y VC
Sbjct: 88 LHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLL---PYKWNPVCCN 144
Query: 323 -MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA-----ELVMRNLL 376
MV + EA++L D MP+K V W ++L + +L E+ R+++
Sbjct: 145 AMVAGYAKNRQFDEARRLFDAMPAK-DLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVV 203
Query: 377 QLDVKVFG 384
++ V G
Sbjct: 204 SWNLMVDG 211
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 108/278 (38%), Gaps = 49/278 (17%)
Query: 99 KCGAVDYAESAFLRMLNP---------SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISI 149
K G +D A F M + S F I +F MP+R++VSWN+MI+
Sbjct: 27 KSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAA 86
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ E F ++ S L T ++ R + + +
Sbjct: 87 YLHNDRVEEARQLFDKMPTRDL-YSWTLMITCYT----------------RNGELAKARN 129
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
+F + L + CN A+V YA+ +A F+ M ++++SW +
Sbjct: 130 LF--NLLPYKWNPVCCN----------AMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSM 177
Query: 270 ISAFSQAGVLEKPRFFFFFVS---------LLSGCSHSGPVTKGKHYFTAMAKFTYTCYF 320
++ +++ G + FF ++ ++ G G + +F + T +
Sbjct: 178 LTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPN-PNTVSW 236
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
V M+ G + EA++L D+MP + V W A++ A
Sbjct: 237 VTMLCGFARFGKIAEARRLFDQMPIR-NVVAWNAMIAA 273
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCW-------- 121
A LHG K+ + + ++ IDM+ KC + +A F + + W
Sbjct: 113 ASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFM 172
Query: 122 KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ G I L I +F +MP RD +SW +I+ L +HG+ + L F ++ G +
Sbjct: 173 RNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIA 232
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+A A + L G +H V+ E ++ + + LIDMY +CGC IE + Q+
Sbjct: 233 VLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGC--IEFARQV------ 284
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
F M++R ++SW +I F+ G ++ FF+
Sbjct: 285 --------------FVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVS 330
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMA---KFTYTC-YFVCMVDLLGLSGLLGEAKKLIDEM 343
+ L+ CSH+G V KG F M K T ++ C+VDL G +G L +A +I+EM
Sbjct: 331 YTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEM 390
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P KP V+ G+LL AC +H + LAE +M++L +LD
Sbjct: 391 PMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLD 426
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 22/123 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + L +H V F + I+ S IDM+ +CG +++A F+
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFV---------- 286
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
KM +R LVSWN++I +GF E+L F + GF + Y A
Sbjct: 287 ------------KMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGA 334
Query: 182 FSA 184
+A
Sbjct: 335 LTA 337
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 163/349 (46%), Gaps = 68/349 (19%)
Query: 50 FTYNTMIN--GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
+T+ +++ GG+R L K +H L+ + + + + + +DM+ KC +V YAE
Sbjct: 271 YTFGSVLTACGGLRAL-----KEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAE 325
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
+ F RM N +++VSW M+ ++GF E + F ++
Sbjct: 326 AVFKRMAN----------------------KNVVSWTAMLVGYGQNGFSEEAVRVFCDMQ 363
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+G + S+ A++ LE G H + + SGLI
Sbjct: 364 RNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALV----------SGLI---------- 403
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
S I + AL+T+Y + GS + ++ F+ MS R+ +SW L+S ++Q G + F
Sbjct: 404 --SFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFE 461
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLS 330
F+++LS CS +G V +G+ YF +M K ++ ++ CM+DL G +
Sbjct: 462 RMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRA 521
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
G L EAK I++MP P + W LL +C + N ++ + +LL+LD
Sbjct: 522 GRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELD 570
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 147/345 (42%), Gaps = 63/345 (18%)
Query: 51 TYNTMINGGVRCL-------------CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
TYN+M+ GV L G + + +HG + KF F + + S +DM+
Sbjct: 124 TYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMY 183
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMIS 148
K G V A F + ++ + I LL +F M ERD +SW TMI+
Sbjct: 184 AKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMIT 243
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
L ++G E + F ++ G + + + +A + L+ G +H+ ++ +
Sbjct: 244 GLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNH 303
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
+VFVGS L+DMY KC S + A+ F+ M+ +N++SW
Sbjct: 304 NVFVGSALVDMYCKC----------------------RSVRYAEAVFKRMANKNVVSWTA 341
Query: 269 LISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315
++ + Q G E+ R F F S++S C++ + +G F A +
Sbjct: 342 MLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCQALVS 400
Query: 316 YTCYFV----CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
F+ ++ L G G + ++ +L DEM + V W AL+
Sbjct: 401 GLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDE-VSWTALV 444
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 139/330 (42%), Gaps = 36/330 (10%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C N A LH L+ K + + + I+ + K G + YA F +M P+ F W
Sbjct: 15 CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74
Query: 122 --------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-F 171
K G + + +F MP RD VSWN++IS +G E + T+ + G
Sbjct: 75 NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
L+ + ++T +S ++ G +H ++V VFVGS L+DMY K G + S
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194
Query: 232 I--QIGKALVTMYA-------EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
+ ++ + V MY G + + F M R+ ISW +I+ Q G+ +
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254
Query: 283 RFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT-CYFV--CMVDL 326
F F S+L+ C + +GK T + + Y FV +VD+
Sbjct: 255 MDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDM 314
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ A+ + M +K V W A+L
Sbjct: 315 YCKCRSVRYAEAVFKRMANK-NVVSWTAML 343
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/452 (26%), Positives = 194/452 (42%), Gaps = 99/452 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL-----ISSIFLQ------LIDDDYRVFCDIGPR-- 47
++AC +S PI +K+H +I T + +S+ + LI D +F + R
Sbjct: 10 LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69
Query: 48 ----YLFTYNTMIN---------------GGVR------------CLCVGNIKMALHLHG 76
+ T N N G++ C +G +K +H
Sbjct: 70 ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129
Query: 77 --LVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI-------- 125
+V VSD+ + KSS +DM+ KCG D F + + + W I
Sbjct: 130 TFIVSP---VSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGR 186
Query: 126 -IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFS 183
+ + +FQKMP ++L+SW +IS L + G ++ F+E+ + G + + ++
Sbjct: 187 KLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIG 246
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A++ L G +H V+ + G ESS+ + ALV MYA
Sbjct: 247 ASANLAVLGLGKQIHCLVILL----------------------GYESSLFVSNALVDMYA 284
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
+ A F M +R+++SW +I +Q G+ E+ + FV
Sbjct: 285 KCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVG 344
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
L+ CSH G V+KG+++F +M K ++ C++DLL SG L EA+ LI MP K
Sbjct: 345 LIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFK 404
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P W ALL AC H NT + V +LL L
Sbjct: 405 PDEATWAALLSACNHHRNTLIGIRVADHLLSL 436
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 154/342 (45%), Gaps = 47/342 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +H K ++ ++ S IDM+ KC A++ F + ++ CW
Sbjct: 389 CASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCW 448
Query: 122 KF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
++ + +F+KMP R+L SWNT+IS ++ + L +F + G
Sbjct: 449 NSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQV 508
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ +++ A A++ L G H++ + + GIE SI
Sbjct: 509 PGEITFSSVLLACANLCSLVTGKMAHAKTIKL----------------------GIEESI 546
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
IG AL MYA+ G Q + F M RN ++W +I ++ G E+ F
Sbjct: 547 FIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMAT 606
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEA 336
F++LL CSH G V + HYF M + ++ CMVD+L +G L EA
Sbjct: 607 GMTPNEHTFLALLFACSHGGLVEQAIHYFDKMQALGISPKEKHYTCMVDVLARAGRLAEA 666
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ L+ + PSK W ALL AC ++ N ++AE + L +L
Sbjct: 667 EALLMKTPSKSEANSWAALLSACNTYRNEEIAERAAKRLHEL 708
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 145/333 (43%), Gaps = 42/333 (12%)
Query: 62 CLCVGNIKMALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C+ G +AL + GL +K +F S + S I ++++ G A F M +
Sbjct: 256 CVGAGEFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVS 315
Query: 121 WKF------------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
W G R+L MPER+ VSW T+I+ + G E + + ++
Sbjct: 316 WTALLDVYSESGDLDGARRVL---DAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLA 372
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG- 227
G + +++ SA AS+ DL G +H+R + M S +VFV LIDMY KC G
Sbjct: 373 DGCRPNISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGD 432
Query: 228 --------IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ-AGV 278
+ +I +LV+ Y+ G +A F+ M RN+ SW +IS ++Q
Sbjct: 433 AQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQF 492
Query: 279 LEKPRFF------------FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCM 323
++ + F F S+L C++ + GK H T + + +
Sbjct: 493 VDALKSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTAL 552
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
D+ SG L +K++ +MP + V W A++
Sbjct: 553 SDMYAKSGDLQSSKRMFYQMPERND-VTWTAMI 584
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 30/242 (12%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF---LRMLNPSLFCWKF- 123
+ +AL LH + +D S+A + + + AF + S F + F
Sbjct: 96 LPLALSLHAHAVRSGVAADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDFM 155
Query: 124 --------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
I +F MP+R +VS+ TM+ L + G E +EL+ S
Sbjct: 156 VSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEA----VELYEQCPSGSV 211
Query: 176 MLYATAFSA--RASVYDLEWGPHLHSRVVHMEPS-------LDVFVGSGLIDMYLK---- 222
+ S R ++ G + P+ + VG+G + L
Sbjct: 212 AFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGL 271
Query: 223 -CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
N ESSI++ +L+T+Y G A F+ M ++++SW L+ +S++G L+
Sbjct: 272 AIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDG 331
Query: 282 PR 283
R
Sbjct: 332 AR 333
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 154/335 (45%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ LHG V K + + + +DM+ KCG +D +
Sbjct: 460 CASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSH-------------- 505
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
MF KM +D V+WN+MIS ++G E L F ++ G +++ ++
Sbjct: 506 --------YMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSI 557
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A + + +G +H ++ D+F S LIDMY KCG +E ++++
Sbjct: 558 LSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCG--NLELALRV------- 608
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
FE M +N +SW +ISA+ G++++ F
Sbjct: 609 -------------FEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTF 655
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
++L+S C+H+G V +G F M + + + CMVDL +G L +A + I +MP
Sbjct: 656 LALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMP 715
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
KP IWGALL AC H N +LAE+ + L +LD
Sbjct: 716 FKPDAGIWGALLHACRVHRNVELAEIASQELFKLD 750
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/427 (20%), Positives = 163/427 (38%), Gaps = 78/427 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+K+C +L +L + R +H + L +++ L+D VF + R
Sbjct: 154 VKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDC 213
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
+N M++G V+ C ++ + LH L
Sbjct: 214 VLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTL 273
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K+ + ++A + + M+ KC ++ A W+ +F MP
Sbjct: 274 AVKYGLEPEVAVANTLVSMYAKCQCLEEA--------------WR--------LFGLMPR 311
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
DLV+WN MIS ++G + L F ++ G S+ A+ A + + G +
Sbjct: 312 DDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEI 371
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H +V +DVF+ S L+D+Y K C + + + A ++ GST +
Sbjct: 372 HGYIVRNCAHVDVFLVSALVDIYFK--CRDVRMAQNVFDATKSIDVVIGSTMISGYVLNR 429
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317
MS + + L++ G+ KP S L C+ + G+ + K Y
Sbjct: 430 MSEAAVKMFRYLLA----LGI--KPN-AVMVASTLPACASMAAMRIGQELHGYVLKNAYE 482
Query: 318 --CYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374
CY ++D+ G L + + +M +K V W +++ + + + A + R
Sbjct: 483 GRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDE-VTWNSMISSFAQNGEPEEALDLFRQ 541
Query: 375 LLQLDVK 381
++ VK
Sbjct: 542 MIMEGVK 548
>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 165/349 (47%), Gaps = 54/349 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ HG+ K F++ + + +DM+ KCG V + F + S+ W
Sbjct: 121 CAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSW 180
Query: 122 KF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGF 171
G+ R +F +MPER++V+W M++ GF E L E+ + G
Sbjct: 181 TVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGH 240
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLH------SRVVHMEPSLD-VFVGSGLIDMYLKCG 224
GL+ + + SA A +L G +H + ++ E + D V VG+ L+DMY KCG
Sbjct: 241 GLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCG 300
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------- 277
I+SSI++ F LM +RN+++W L S + G
Sbjct: 301 --NIDSSIKV--------------------FRLMRKRNVVTWNALFSGLAMHGKGRMVID 338
Query: 278 -----VLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGL 329
V E F +LLS CSH G V +G F ++ + ++ CMVD+LG
Sbjct: 339 MFPEMVREVKPDDLTFTALLSACSHLGMVDEGWRCFHSLQFYGLEPKVDHYACMVDILGR 398
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+G + EA+ L+ EMP P V+ G+LLG+C H ++AE + R L+Q+
Sbjct: 399 AGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKRELIQM 447
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 111/272 (40%), Gaps = 36/272 (13%)
Query: 131 MFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F ++P ++D V W T++S +R G ++ F+E+ + + F A +
Sbjct: 65 LFDEIPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKL 124
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALV 239
DL +G H V M V V + L+DMY KCG E S+ ++
Sbjct: 125 EDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVL 184
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFF 285
+ ++ F+ M RN+++W ++++ + AG VLE F
Sbjct: 185 DTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNF 244
Query: 286 FFFVSLLSGCSHSGPVTKGK--HYFT---AM---AKFTYTCYFV--CMVDLLGLSGLLGE 335
S+LS C+ SG + G+ H + AM + TY V +VD+ G +
Sbjct: 245 VTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDS 304
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
+ K+ M K V W AL H ++
Sbjct: 305 SIKVFRLM-RKRNVVTWNALFSGLAMHGKGRM 335
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 182/405 (44%), Gaps = 80/405 (19%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
I D ++F ++ + + ++NTMI+G + G I A++L + + VS ++
Sbjct: 146 ISDAEKLFNEMPNKNVVSWNTMIDGYAQN---GRIDSAMYLFEKMPERNVVSWNTV---- 198
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI----MFQKMPERDLVSWNTMISI 149
+ M +CG ++ A F RM + W I LL +F++MPERDL SWNTMI+
Sbjct: 199 MSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERDLPSWNTMITG 258
Query: 150 LTRHGFGFETLCTFIEL-------WN-------------------------HGFGLSSML 177
L ++G F E+ W +G +
Sbjct: 259 LIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGT 318
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
+ + A +++ L G +H + FV S LI+MY KCG ++G A
Sbjct: 319 FVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCG--------ELGTA 370
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
M+ +G + S+R+++SW +I+A++ G ++ FF
Sbjct: 371 R-KMFDDG-----------MTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPD 418
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLI 340
+V LLS CSH+G V +G YF + K ++ C+VDL G +G L EA I
Sbjct: 419 DVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFI 478
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ + +KP+ +WGALL C H N K+ + + LL+++ + G+
Sbjct: 479 ERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGT 523
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 152/367 (41%), Gaps = 56/367 (15%)
Query: 36 DDYRVFCDIGPRYLFTYNTMINGGV-RCLCV-------GNIKMALHLHGLVKKFYFVSDE 87
+DYR PR FT ++G V RC + G I A L +++ ++
Sbjct: 47 NDYRTAKISIPRKDFT----VDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWT 102
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRM-LNPSLFCWKF---GIIR------LLIMFQKMPE 137
++ I ++KCG ++ A F R+ ++ W G IR +F +MP
Sbjct: 103 TV----ISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPN 158
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+++VSWNTMI ++G + F ++ + + T S A +E L
Sbjct: 159 KNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV----VSWNTVMSMLAQCGRIEEARRL 214
Query: 198 HSRVVHMEPSLDVF----VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
R+ P DV + +GL+D L E + ++T + G ++A
Sbjct: 215 FDRM----PERDVISWTAMIAGLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARK 270
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSG 299
F M ++N+ISW +I+ Q G E+ F FVS+L CS+
Sbjct: 271 LFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLA 330
Query: 300 PVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDE-MPSKPTCVIWGAL 355
+ +G+ ++K Y T ++++ G LG A+K+ D+ M S+ V W +
Sbjct: 331 GLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGI 390
Query: 356 LGACCSH 362
+ A H
Sbjct: 391 IAAYAHH 397
>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 658
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 168/382 (43%), Gaps = 66/382 (17%)
Query: 17 HAQLIS-TCLISSIFL-QLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKM--AL 72
H +I+ T +IS + +L +D R+F + R L N++ C G+ ++
Sbjct: 218 HRNVITLTAVISGLIENELHEDGLRLF-SLMRRGLVHPNSVTYLSALAACSGSQRIVEGQ 276
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L+ K+ S+ I + +DM+ KCG+++ A W +F
Sbjct: 277 QIHALLWKYGIESELCIESALMDMYSKCGSIEDA--------------W--------TIF 314
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+ E D VS ++ L ++G E + FI + G + + + + L
Sbjct: 315 ESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLG 374
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G LHS V+ + S + FV +GLI+MY KCG +
Sbjct: 375 LGKQLHSLVIKRKFSGNTFVNNGLINMYSKCG----------------------DLTDSQ 412
Query: 253 LAFELMSRRNMISWMVLISAFSQAG-------------VLEKPRFFFFFVSLLSGCSHSG 299
F M +RN +SW +I+AF++ G LE F+SLL CSH G
Sbjct: 413 TVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVG 472
Query: 300 PVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
+ KG+ M + T ++ C++D+LG +GLL EAK ID +P KP C IW AL
Sbjct: 473 LIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQAL 532
Query: 356 LGACCSHYNTKLAELVMRNLLQ 377
LGAC H +T++ E L Q
Sbjct: 533 LGACSFHGDTEVGEYAAEQLFQ 554
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 157/340 (46%), Gaps = 62/340 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ K L +HG + + D + S IDM+ K G ++ A
Sbjct: 195 CTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASR------------- 241
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+ +P + ++SW +IS ++GF +TL + +E+ N GF + ++
Sbjct: 242 ---------VFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISS 292
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A V +L+ G LH +V LD G+ LIDMY KCG ++ +AL
Sbjct: 293 LSACAQVGNLKVGKSLHGHIVK-RLYLDKVSGTALIDMYAKCG------ALTFARAL--- 342
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFFF------------FF 288
F+ + R++I W +IS++ G +E F F
Sbjct: 343 -------------FDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATF 389
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
SLLS CSHSG V +G+++F + + ++ CMVDLL +G + EA +LI+ M
Sbjct: 390 ASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMH 449
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
KP IW ALL C +H N + E+V + +L+ + G
Sbjct: 450 IKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLG 489
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 42/270 (15%)
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
II +F+KMP+R + +WN+MI +R + E L + + + G S +
Sbjct: 33 NIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLK 92
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A +S+ DL+ G + ++ V DVFV S +++ +YA
Sbjct: 93 ACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLN----------------------LYA 130
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----------VLEKPRFF---FFFVS 290
+ G KA + F+ M +R+++SW +I+ F+Q+G ++K R V
Sbjct: 131 KSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVG 190
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKP 347
L+ C+ G G M + V ++D+ +G L A ++ + +P K
Sbjct: 191 LIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYK- 249
Query: 348 TCVIWGALLGACCSH--YNTKLAELV-MRN 374
+ + WGAL+ + N LA LV M+N
Sbjct: 250 SVISWGALISGFAQNGFANKTLASLVEMQN 279
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 38/248 (15%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
I+F KM +RD+VSW TMI+ + G + + + + ++ A S+
Sbjct: 140 IVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLG 199
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D ++G +H +V E ++D + + LID MYA+ G +
Sbjct: 200 DSKFGLSVHGHMVRREMNMDNVLQTSLID----------------------MYAKNGKLE 237
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSGCS 296
A FE + +++ISW LIS F+Q G K +S LS C+
Sbjct: 238 LASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACA 297
Query: 297 HSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G + GK + K Y ++D+ G L A+ L D++ + ++W A
Sbjct: 298 QVGNLKVGKSLHGHIVKRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPR-DLILWNA 356
Query: 355 LLGACCSH 362
++ + H
Sbjct: 357 MISSYGIH 364
>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Brachypodium distachyon]
Length = 706
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 151/309 (48%), Gaps = 48/309 (15%)
Query: 97 HVKCGAVDYAESAFLRMLN-PSLFC-------WKFGIIRLL-IMFQKMPERDLVSWNTMI 147
+++ G V+ AE F M + P C + G++ MF++M RD +W+ MI
Sbjct: 246 YIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMI 305
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ ++ F E L TF E+ G + + + + A++ ++G LH+ ++
Sbjct: 306 KVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFD 365
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
DVF S LI MY+KCG + KA F + ++++ W
Sbjct: 366 TDVFAVSALITMYIKCG----------------------NLDKAKRVFNMFEPKDVVMWN 403
Query: 268 VLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+I+ ++Q G+ E+ F ++ +L+ CS++G V +G+ F +M
Sbjct: 404 SMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMN 463
Query: 315 TY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
+ ++ CMVDLLG +GL+ EA LI+ MP +P +IWGAL+GAC H N ++AE+
Sbjct: 464 SSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEV 523
Query: 371 VMRNLLQLD 379
+ LL+L+
Sbjct: 524 AAKKLLELE 532
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 42/254 (16%)
Query: 129 LIMFQKMPERDLVSWNTMISILT--RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
L +F +MP RDL S+N +I+ L+ RH L + L+S+ +
Sbjct: 68 LGLFHRMPSRDLGSYNALIAGLSLRRH-----------TLPDAAAALASIPLPPSV---V 113
Query: 187 SVYDLEWGPHLHS------RVVHMEPS---------LDVFVGSGLIDMYLKCGCNGIESS 231
S L G H R+ H P L F+ +G ++ K +
Sbjct: 114 SFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKD 173
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
+ A+++ Y + G +A F+ M +RN++SW +IS ++Q G + R F
Sbjct: 174 VVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPD 233
Query: 287 ----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDE 342
+ ++L G +G V + F AM MV G G++ AK + +
Sbjct: 234 RNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVG-FGQHGMVDAAKAMFER 292
Query: 343 MPSKPTCVIWGALL 356
M ++ W A++
Sbjct: 293 MCARDDGT-WSAMI 305
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 75/378 (19%), Positives = 140/378 (37%), Gaps = 82/378 (21%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRC 62
A +L S+P+ + + ++ L + L+ D R+F + R TY ++ G
Sbjct: 99 AAAALASIPLPPSVVS--FTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGG---F 153
Query: 63 LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
L G + A L F + D+ + A +A L S +C
Sbjct: 154 LDAGRVNEARKL------FDEMPDKDVV---------------ARTAML-----SGYCQA 187
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
I +F +MP+R++VSW MIS ++G +L F
Sbjct: 188 GRITEARALFDEMPKRNVVSWTAMISGYAQNG-------------------KVILARKLF 228
Query: 183 SARASVYDLEWGPHL--HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
++ W L + + H+E + D+F + + D + CN A++
Sbjct: 229 EVMPDRNEVSWTAMLVGYIQAGHVEDAEDLF--NAMPD-HPVAACN----------AMMV 275
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
+ + G A FE M R+ +W +I + Q L + F
Sbjct: 276 GFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTS 335
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMP 344
F+S+L+ C+ G+ AM + ++ + L+ + G L +AK++ +
Sbjct: 336 FISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFE 395
Query: 345 SKPTCVIWGALLGACCSH 362
K V+W +++ H
Sbjct: 396 PK-DVVMWNSMITGYAQH 412
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 22/116 (18%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
Y + I+ C + LH + + F +D + I M++KCG +D A+ F
Sbjct: 332 NYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVF 391
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
M P +D+V WN+MI+ +HG G E L F +L
Sbjct: 392 -NMFEP---------------------KDVVMWNSMITGYAQHGLGEEALGIFDDL 425
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 156/339 (46%), Gaps = 48/339 (14%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW----- 121
++++ LHG V+ + +DM++KCG ++ A+S F + ++ W
Sbjct: 237 DLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIV 296
Query: 122 ---KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
+FG++ +F +MPERD+ WN +++ + G E L F ++ +
Sbjct: 297 GYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDIT 356
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
SA + + LE G +H + SL V +G+ L+DMY KC
Sbjct: 357 MVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKC-------------- 402
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
G+ +KA F+ + +N ++W +IS + G + +F
Sbjct: 403 --------GNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPD 454
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLI 340
F+ +LS C H+G V +G+ +F+ M + ++ CMVDLLG +G L EA+ L+
Sbjct: 455 EITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLV 514
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ MP +P V+WGAL AC H N L E L++LD
Sbjct: 515 NTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELD 553
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 27/270 (10%)
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPH 196
RDLVSWNT+I R G E L F + G + S A + DLE G
Sbjct: 184 RDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRR 243
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIESSIQIG-KALVTMYAEGGS 247
LH V V + + ++DMY+KCG GI+ + ++ YA+ G
Sbjct: 244 LHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGL 303
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSG 294
A F+ M R++ W L++ + Q E R F V+LLS
Sbjct: 304 MDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSA 363
Query: 295 CSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
CS G + G H++ + + + +VD+ G + +A ++ E+P K +
Sbjct: 364 CSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEK-NALT 422
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDVK 381
W A++ +H + +A + +++L ++
Sbjct: 423 WTAMISGLANHGHADVAIKYFQRMIELGLQ 452
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 75/195 (38%), Gaps = 54/195 (27%)
Query: 22 STCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRC------------------- 62
+T ++ L+DD +VF ++ R +F +N ++ G V+C
Sbjct: 292 TTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVE 351
Query: 63 -----------LC--VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
C +G ++M + +H + + + + +DM+ KCG ++ A
Sbjct: 352 PDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKA--- 408
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
IR+ F+++PE++ ++W MIS L HG + F +
Sbjct: 409 ----------------IRV---FKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIEL 449
Query: 170 GFGLSSMLYATAFSA 184
G + + SA
Sbjct: 450 GLQPDEITFIGVLSA 464
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 155/344 (45%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C GN+ +H + + V D + + + M+ CG++D A + F +M +L
Sbjct: 233 CGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVAS 292
Query: 122 --------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
K G I +F +M ++DLV W+ MIS E L F E+ + G
Sbjct: 293 TAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIK 352
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + +A A + L+ +H +FV NG ++
Sbjct: 353 PDQVTMLSVITACAHLGALDQAKWIH-----------LFVDK-----------NGFGGAL 390
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----- 287
I AL+ MYA+ GS ++A F+ M R+N+ISW +ISAF+ G FF
Sbjct: 391 PINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDE 450
Query: 288 --------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
FV +L CSH+G V +G+ F +M ++ CMVDL G + LL E
Sbjct: 451 NIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLRE 510
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A +L++ MP P +IWG+L+ AC H +L E + LL+LD
Sbjct: 511 ALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELD 554
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 134/323 (41%), Gaps = 48/323 (14%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
V ++ L +HGL K F SD + + M+ CG + A
Sbjct: 135 VKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEAR----------------- 177
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+MF KM RD+V+W+ MI + G + L F E+ N+ M+ +T SA
Sbjct: 178 -----LMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSA 232
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIG 235
+L +G +H ++ +D + S L+ MY CG + ++
Sbjct: 233 CGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVAS 292
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------- 286
A+VT Y++ G + A F M +++++ W +IS ++++ ++ F
Sbjct: 293 TAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIK 352
Query: 287 ----FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKL 339
+S+++ C+H G + + K H F F ++++ G L A+++
Sbjct: 353 PDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRI 412
Query: 340 IDEMPSKPTCVIWGALLGACCSH 362
D+MP K + W ++ A H
Sbjct: 413 FDKMPRK-NVISWTCMISAFAMH 434
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 35/190 (18%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F +P+ + N + L+R +TL + + G + + A + V
Sbjct: 76 LSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRV 135
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L G +H + D FV +GL+ MY C G
Sbjct: 136 KSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAAC----------------------GRI 173
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
+A L F+ M R++++W ++I + Q+G+ F ++LS C
Sbjct: 174 AEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSAC 233
Query: 296 SHSGPVTKGK 305
+G ++ GK
Sbjct: 234 GRAGNLSYGK 243
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ +H V + +D SI + ++++ +CG A S
Sbjct: 456 CAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFS------------- 502
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+ + +D ++WN M+S + G E L FI+++ G + + ++
Sbjct: 503 ---------LFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSS 553
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ D++ G +H+ V+ K GC S ++ AL+++
Sbjct: 554 ISASANLADIKQGKQIHATVI-------------------KTGCT---SETEVANALISL 591
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
Y + GS + A + F MS RN +SW +I++ SQ G LE F F
Sbjct: 592 YGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTF 651
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ +L+ CSH G V +G YF +M+ ++ C+VD+LG +G L A+K ++EMP
Sbjct: 652 IGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMP 711
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++W LL AC H N ++ EL + LL+L+
Sbjct: 712 VSANAMVWRTLLSACRVHKNIEIGELAAKYLLELE 746
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 64/329 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY ++ C G I + +H L K F SD ++ IDM+ K G +D A
Sbjct: 346 FTYPCLLR---TCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARR- 401
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ + + +D+VSW +MI+ +H F E L TF ++
Sbjct: 402 ---------------------ILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLF 440
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ A+A SA A + + G +HSRV S DV + + L+++Y +C
Sbjct: 441 GIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARC------ 494
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
G +++A FE + ++ I+W ++S F+Q+G+ E+ F
Sbjct: 495 ----------------GRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKM 538
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLL 333
FVS +S ++ + +GK + K + T ++ L G G +
Sbjct: 539 YQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSI 598
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+AK EM S+ V W ++ +C H
Sbjct: 599 EDAKMQFFEM-SERNHVSWNTIITSCSQH 626
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 101/427 (23%), Positives = 187/427 (43%), Gaps = 76/427 (17%)
Query: 1 MKAC-GSLKSLPIARKIHAQLISTC----------LISSIFLQ--LIDDDYRVFCDIGPR 47
++ C GS+K P+ IHA+ I TC L+ ++ + L+ RVF + R
Sbjct: 48 LRECRGSVKHWPLVPVIHAKAI-TCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSAR 106
Query: 48 YLFTYNTMING----GVRCLCVGNIKMALHLHGLVKKFYFVSD--ESIAKSSIDMHVKCG 101
++ M++G G+ VG + +H G+V Y +S + K+++ + G
Sbjct: 107 DNVSWVAMLSGYARNGLGEEAVG-LYHQMHCSGVVPTPYVLSSVLSACTKAAL---FEQG 162
Query: 102 AVDYAE-----SAFLRMLNPSLFCW--KFGIIRLL-IMFQKMPERDLVSWNTMISILTRH 153
+ +A+ S ++ +L +FG + L +F +MP D V++NT+IS +
Sbjct: 163 RLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQC 222
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G G L F E+ G+ + A+ +A AS+ DL G LHS ++ S D +
Sbjct: 223 GNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIE 282
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
L+D+Y+KCG I +++I F+ R N++ W +++ A+
Sbjct: 283 GSLLDLYVKCGV--IVEALEI--------------------FKSGDRTNVVLWNLMLVAY 320
Query: 274 SQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTC 318
Q L K F F + LL C+++G + G+ H + F
Sbjct: 321 GQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDM 380
Query: 319 YFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
Y ++D+ G L +A+++++ + +K V W +++ H K A +
Sbjct: 381 YVSGVLIDMYSKYGWLDKARRILEVLEAKDV-VSWTSMIAGYVQHEFCKEALETFK---- 435
Query: 378 LDVKVFG 384
D+++FG
Sbjct: 436 -DMQLFG 441
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 39/227 (17%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA-RASVYDLEW 193
M R S N ++ H + L F GL S+ +A A R SV
Sbjct: 1 MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
P +H++ + D G+ LID +YA+ G Q+A
Sbjct: 61 VPVIHAKAITCGLGEDRIAGNLLID----------------------LYAKKGLVQRARR 98
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLSGCSHSGP 300
FE +S R+ +SW+ ++S +++ G+ E+ + S+LS C+ +
Sbjct: 99 VFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAAL 158
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLS---GLLGEAKKLIDEMP 344
+G+ + K V L+ L G L A+++ EMP
Sbjct: 159 FEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMP 205
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 154/339 (45%), Gaps = 48/339 (14%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---F 123
++ + + +H V + + D+ + + +DM+ +CG +D A F M S+ W
Sbjct: 176 DLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVIS 235
Query: 124 GII------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
G++ R +F MPERD ++W MI + G + L TF +
Sbjct: 236 GLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFT 295
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
+ +A A + LE G + + +DVFVG+ LIDMY KC
Sbjct: 296 MVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKC-------------- 341
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---------- 287
GS ++A F+ M R+ +W +I + G E+ F+
Sbjct: 342 --------GSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPD 393
Query: 288 ---FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLI 340
FV +L+ C+H+G V KG+ +F +M + ++ C++D+LG +G L EA I
Sbjct: 394 EVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTI 453
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
D+MP KP IWG LL +C + N+++ EL LL+LD
Sbjct: 454 DKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELD 492
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 22/187 (11%)
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
V WN +IS R G + C+F+++ +++ Y + SA DL G +H R
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGC--------NGIE-SSIQIGKALVTMYAEGGSTQKA 251
V+ D V + L+DMY +CG G++ S+ ++++ G +A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246
Query: 252 DLAFELMSRRNMISWMVLISAFSQAG----VLEKPRFF---------FFFVSLLSGCSHS 298
F+ M R+ I+W +I + Q G LE R+ F VS+++ C+
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306
Query: 299 GPVTKGK 305
G + G+
Sbjct: 307 GALETGE 313
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 158/356 (44%), Gaps = 64/356 (17%)
Query: 50 FTYNTMINGGVRCLC-VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
FTY ++ V C V ++ +H + + + S I + +DM+ + G VDYA
Sbjct: 179 FTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYAS- 237
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+F MP R++VSW+ MI+ ++G FE L TF E+
Sbjct: 238 ---------------------YVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276
Query: 169 HGFGLS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
S S+ + A AS+ LE G +H ++
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILR----------------------R 314
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G++S + + ALVTMY G + F+ M R+++SW LIS++ G +K F
Sbjct: 315 GLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIF 374
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGL 329
FVS+L CSH G V +GK F M + ++ CMVDLLG
Sbjct: 375 EEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGR 434
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ L EA K++ +M ++P +WG+LLG+C H N +LAE R L L+ K G+
Sbjct: 435 ANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGN 490
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 127/335 (37%), Gaps = 61/335 (18%)
Query: 63 LCVGN---IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
LC G+ + AL +H + D +A I M+ G+VDYA
Sbjct: 85 LCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARK----------- 133
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
+F K +R + WN + LT G G E L + ++ G Y
Sbjct: 134 -----------VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYT 182
Query: 180 TAFSA----RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
A +V L G +H+ + S V++ + L+DMY + GC S + G
Sbjct: 183 YVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGG 242
Query: 236 ---------KALVTMYAEGGSTQKADLAFELMSRR------NMISWMVLISAFSQAGVLE 280
A++ YA+ G +A F M R N ++ + ++ A + LE
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302
Query: 281 KPRFFFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLL 327
+ + ++ +L++ G + G+ F M + ++
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWN-SLISSY 361
Query: 328 GLSGLLGEAKKLIDEM---PSKPTCVIWGALLGAC 359
G+ G +A ++ +EM + PT V + ++LGAC
Sbjct: 362 GVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396
>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
Length = 770
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 168/382 (43%), Gaps = 66/382 (17%)
Query: 17 HAQLIS-TCLISSIFL-QLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKM--AL 72
H +I+ T +IS + +L +D R+F + R L N++ C G+ ++
Sbjct: 218 HRNVITLTAVISGLIENELHEDGLRLFS-LMRRGLVHPNSVTYLSALAACSGSQRIVEGQ 276
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L+ K+ S+ I + +DM+ KCG+++ A W +F
Sbjct: 277 QIHALLWKYGIESELCIESALMDMYSKCGSIEDA--------------W--------TIF 314
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+ E D VS ++ L ++G E + FI + G + + + + L
Sbjct: 315 ESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLG 374
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G LHS V+ + S + FV +GLI+MY KCG +
Sbjct: 375 LGKQLHSLVIKRKFSGNTFVNNGLINMYSKCG----------------------DLTDSQ 412
Query: 253 LAFELMSRRNMISWMVLISAFSQAG-------------VLEKPRFFFFFVSLLSGCSHSG 299
F M +RN +SW +I+AF++ G LE F+SLL CSH G
Sbjct: 413 TVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVG 472
Query: 300 PVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
+ KG+ M + T ++ C++D+LG +GLL EAK ID +P KP C IW AL
Sbjct: 473 LIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQAL 532
Query: 356 LGACCSHYNTKLAELVMRNLLQ 377
LGAC H +T++ E L Q
Sbjct: 533 LGACSFHGDTEVGEYAAEQLFQ 554
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 166/354 (46%), Gaps = 51/354 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT++ +I C+ V N++M L HG V KF + S + + I ++ CG +D A +
Sbjct: 113 FTFSFVIRA---CIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNM 169
Query: 110 FLRMLNPSLFCWKFGII------RLLI---MFQKMPERDLVSWNTMISILTRHGFGFETL 160
F + + W I ++LI +F +MPE++ VSW +I+ R GF E L
Sbjct: 170 FDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEAL 229
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F ++ GF L+ A +A A + L+ G +H+ V SLD +G+ LIDMY
Sbjct: 230 EVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMY 289
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KCGC + S+ F+ M R++ ++ LIS + E
Sbjct: 290 AKCGCIEMACSV----------------------FDEMDDRDVYAFTCLISGLANHDKSE 327
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCM 323
F FV +L+ CS G V +G F +M+ ++ C+
Sbjct: 328 AAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCL 387
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
VDLLG +G + EAK+++ EMP +P GALL AC H + +L E ++ +L+Q
Sbjct: 388 VDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQ 441
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 106/302 (35%), Gaps = 54/302 (17%)
Query: 84 VSDESIAKSSIDMHVKCGAVD---YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
+ D A I +H A YAE FL + N S F
Sbjct: 40 LKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFI-------------------- 79
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
WNTM+ + + + ++ ++ A V++L+ G H +
Sbjct: 80 --WNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQ 137
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKA 251
VV FV +GLI +Y CG I+ + L++ Y G A
Sbjct: 138 VVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIA 197
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHS 298
F+ M +N +SW LI+ + + G ++ F+ V L+ C+
Sbjct: 198 RELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFL 257
Query: 299 GPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKP----TCVI 351
G + +G+ H + + ++D+ G + A + DEM + TC+I
Sbjct: 258 GALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLI 317
Query: 352 WG 353
G
Sbjct: 318 SG 319
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 130/266 (48%), Gaps = 39/266 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F + +++VSWN +I+ R G G + F ++ GF + Y++ + AS
Sbjct: 262 VIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLAC-ASSG 320
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
LE G +H+ V+ K G I IG L+ MYA+ GS +
Sbjct: 321 SLEQGKWVHAHVI-------------------KSGGQPI---AYIGNTLIDMYAKSGSIK 358
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
A F + +++++SW +IS ++Q G+ + F F+S+L+ CS
Sbjct: 359 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 418
Query: 297 HSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
HSG + +G++YF M K + V +VDLLG +G L EA K I+EMP KPT +WG
Sbjct: 419 HSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWG 478
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLD 379
ALLGAC H N L + +LD
Sbjct: 479 ALLGACRMHKNMDLGVYAAEQIFELD 504
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 131/326 (40%), Gaps = 63/326 (19%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
Y+ M+N +C + +K +H ++ F D + ++M+ KCG+++ A+
Sbjct: 108 YSKMLN---KCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQD--- 161
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+F KMP +D+VSW +IS ++ G E L F ++ + GF
Sbjct: 162 -------------------LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF 202
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ ++ A + G LH+ + ++V VGS L+D
Sbjct: 203 QPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLD------------- 249
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
MYA ++A + F ++ +N++SW LI+ ++ G E F
Sbjct: 250 ---------MYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLR 300
Query: 287 -------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEA 336
F S + C+ SG + +GK H + Y ++D+ SG + +A
Sbjct: 301 QGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDA 360
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSH 362
KK+ + K V W +++ H
Sbjct: 361 KKVFRRL-VKQDIVSWNSIISGYAQH 385
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 42/218 (19%)
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
LY+ + + L+ G +H+ + D+ + + +++MY KC
Sbjct: 107 LYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC------------- 153
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
GS ++A F+ M ++M+SW VLIS +SQ+G + F
Sbjct: 154 ---------GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQP 204
Query: 287 --FFVSLLSGCSHSGPVT-KGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLI 340
F +S L S +GP G+ K+ Y ++D+ + EAK +
Sbjct: 205 NEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIF 264
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ + +K V W AL+ H E VMR Q+
Sbjct: 265 NSLAAK-NVVSWNALIAG---HARKGEGEHVMRLFXQM 298
>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Brachypodium distachyon]
Length = 669
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 156/331 (47%), Gaps = 72/331 (21%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH LV K D + + +D + K G D G R + F
Sbjct: 215 LHALVVKTGLDGDAGVVNTMLDAYAKGGRRD------------------LGAARKV--FD 254
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWN-------HGFGLSSMLYATAFSARA 186
M E+D+VSWN+MI++ ++G + L + ++ N + LS++L A A +
Sbjct: 255 TM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAG-- 311
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
++ G +H++VV M G+E ++ +G ++V MY++ G
Sbjct: 312 ---TIQTGKCIHNQVVRM----------------------GLEENVYVGTSVVDMYSKCG 346
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
+ A AF+ + +N++SW +I+ + G ++ F F+S+L+
Sbjct: 347 RVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLA 406
Query: 294 GCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSH+G + KG++++ AM K ++ CMVDLLG +G L EA LI EM KP
Sbjct: 407 ACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDA 466
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
IWGALL AC H N +LAE+ + L +LD
Sbjct: 467 AIWGALLSACRIHKNVELAEISAKRLFELDA 497
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G I+ +H V + + + S +DM+ KCG V+ A A
Sbjct: 307 CAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKA------------ 354
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
FQK+ E++++SW+ MI+ HG G E L F E+ G + + + +
Sbjct: 355 ----------FQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISV 404
Query: 182 FSARASVYDLEWGPHLHS---RVVHMEPSLDVFVGSGLIDMYLKCGC 225
+A + L+ G + ++ + +EP ++ + ++D+ + GC
Sbjct: 405 LAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHY--GCMVDLLGRAGC 449
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 122/447 (27%), Positives = 184/447 (41%), Gaps = 112/447 (25%)
Query: 14 RKIHAQLISTCLI----------------SSIFLQLIDDDYRVFCDIGPRYLFTYNTMIN 57
R+IHAQ I + L+ S I+ L+ VF I +F YN MI
Sbjct: 42 RQIHAQFIVSGLLARPPNAGRLLDSYVSMSQIYYALL-----VFNRIPSPDVFAYNAMIR 96
Query: 58 GGVRCLCVGN---------------------------IKMALHL---------HGLVKKF 81
G L +GN +K+ HL H V K
Sbjct: 97 G----LTLGNCPYDSLLLYNKLLLGGLTPDNYTYTFVLKVCSHLKAIFEGKQVHCQVIKA 152
Query: 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMF 132
D I S I M+ K + AE ++ + + + + MF
Sbjct: 153 GVAPDTHIHTSLIHMYAKSDCLACAEGVLAECSQENVLAINSMISGYMSQGHVEKARAMF 212
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELW---NHGFGLSSMLYATAFSARASVY 189
KM +D +W+ MI+ T++G E L F E+ N G + ++ SA A +
Sbjct: 213 DKMGAKDAATWSGMITGYTKNGMHEEALVMFREMMMVSNSGVQPNESALVSSLSATACLG 272
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L+ G +H+ + + + + +G+GL+DMY K C I S ++
Sbjct: 273 ALDQGRWIHAYIRRIGAKISITLGTGLVDMYAK--CGSIHCSYKL--------------- 315
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
F M +R++++W V++S F+ G K F FV++LS CS
Sbjct: 316 -----FREMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTRPNEVIFVAILSACS 370
Query: 297 HSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H+G + G HYF M ++ CMVDLLG +G L EA++LI MP +PT VIW
Sbjct: 371 HAGYLELGHHYFNQMVTDFGIRPSVEHYGCMVDLLGRAGQLAEAEELIISMPEEPTAVIW 430
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
GALL AC H + + R L+QL+
Sbjct: 431 GALLSACRIHKDLRRGRRAFRQLMQLE 457
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 185/419 (44%), Gaps = 71/419 (16%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ--------LIDD--DYRVFCDIGPRYLFTY 52
ACG L LP+ HA+ + T + +F + I D R D G R L ++
Sbjct: 123 ACGVL-GLPV----HAEAVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDHGARDLVSW 177
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK-CGAVDYAESAFL 111
N+M+ G V C G +++A L + + D + ID + K G VD A F
Sbjct: 178 NSMVAGYVAC---GELELAQELFDGMP----LRDAFSWATMIDAYGKRSGGVDRARELFD 230
Query: 112 RMLNPSLFCW---------KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
N L CW + + +F++MPER+++SW+ ++ R G E L
Sbjct: 231 ETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALEL 290
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F + G + AF+A A + LE G LHS + + DV V + LIDMY+K
Sbjct: 291 FQRMLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMK 350
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI------------ 270
CG + +GK L FE M +++++W V+I
Sbjct: 351 CG------RLDLGK----------------LIFESMPDKSVVTWNVMIIGLGTHSCGLHA 388
Query: 271 -SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVD 325
F Q P +++L+ C+H+G +++G F M K ++ +VD
Sbjct: 389 VKLFYQMEAEGAPIDDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVD 448
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
LLG +G L A+ I+ MP +PT +WG+LL AC SH +LAEL + L L FG
Sbjct: 449 LLGRAGHLDHARHAIETMPMEPTPELWGSLLAACRSHRCVELAELSVERLASLGADDFG 507
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 115/418 (27%), Positives = 185/418 (44%), Gaps = 68/418 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLIDD---------DY--RVFCDIGPR 47
+KAC LP + IH + +F+ LID +Y ++F ++G +
Sbjct: 128 LKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEK 187
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
L ++N+MI G V+ G++ A L + + VS +I +D +VK G + A
Sbjct: 188 DLVSWNSMIGGLVKA---GDLGRARKLFDEMAERDAVSWNTI----LDGYVKAGEMSQAF 240
Query: 108 SAFLRMLNPSLFCW--------KFGIIRLLIM-FQKMPERDLVSWNTMISILTRHGFGFE 158
+ F +M ++ W K G + + M F KMP ++LV+W +IS G E
Sbjct: 241 NLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKE 300
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
+ ++ G + +A A L G +H+ + +
Sbjct: 301 ATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIR------------- 347
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
+KC S+ + ALV MYA+ G KA F MS R+++SW ++ + G
Sbjct: 348 --IKC-------SVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGH 398
Query: 279 LEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFV 321
EK F +++L C+H+G V +G YF +M + + ++
Sbjct: 399 GEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYG 458
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
CM+DLLG G L EA +L+ MP +P VIWG LLGAC H LAE V+ L+ L+
Sbjct: 459 CMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLE 516
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 108/257 (42%), Gaps = 30/257 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++ + ++ +NT+I ++ + TF ++ +G + Y A
Sbjct: 77 VFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKA---CNG 133
Query: 191 LEWGPHLHSRVVHMEPS---LDVFVGSGLIDMYLKCGCNGIESSIQI-----GKALVTMY 242
W P + H+E D+FV + LID Y KCG G+ ++++ K LV+
Sbjct: 134 KGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWN 193
Query: 243 AE-GGSTQKADLA-----FELMSRRNMISWMVLISAFSQAGVLEK---------PRFFFF 287
+ GG + DL F+ M+ R+ +SW ++ + +AG + + R
Sbjct: 194 SMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVS 253
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS-- 345
+ +++SG +G + + F M F + ++ GL EA L ++M +
Sbjct: 254 WSTMVSGYCKTGDMEMARMLFDKMP-FKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAG 312
Query: 346 -KPTCVIWGALLGACCS 361
KP ++L AC
Sbjct: 313 LKPDDGTLISILAACAE 329
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 159/362 (43%), Gaps = 54/362 (14%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM++ C N+ + + + + + + ++ ++IDM VKCG V+ A F M
Sbjct: 345 TMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNM 404
Query: 114 LNPSLFCW-----------KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+ W + GI R + F MP +D+ +WN +IS + G E L
Sbjct: 405 EKRDVVSWTTIIDGYAKMSEHGIARDI--FDSMPRKDIPAWNVLISGYEQSGRPKEALAI 462
Query: 163 FIELW--NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F EL G + + SA A + ++ G +H + L+ + + LIDMY
Sbjct: 463 FRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMY 522
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
K G +E +I++ F + +++ W +I+ + G E
Sbjct: 523 SKSG--DVEKAIEV--------------------FHSIGNKDVFVWSAMIAGLAMHGRGE 560
Query: 281 KPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCM 323
F F +LL CSHSG V +GK F M + T ++ CM
Sbjct: 561 AAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCM 620
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383
VD+LG +G L EA K I+ MP P+ +WGALLGACC H N +LAE LL+++
Sbjct: 621 VDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNH 680
Query: 384 GS 385
G+
Sbjct: 681 GA 682
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/421 (22%), Positives = 166/421 (39%), Gaps = 69/421 (16%)
Query: 3 ACGSLKSLPIARKIHAQ-----------LISTCLISSIFLQLIDDDYRVFCD--IGPRYL 49
A S +L ARK+ Q LI SS +Q + R+ D GP
Sbjct: 182 AFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNK- 240
Query: 50 FTYNTMINGGV--RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
FT+ +I RC VG +HG+ K F D + S I + CG +D A
Sbjct: 241 FTFPVLIKAVAERRCFLVGKA-----VHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAY 295
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
F M+ + +D+VSWN+M++ + G+ + L F +
Sbjct: 296 LVF-EMIEGN-------------------NKDIVSWNSMVTGFVQGGYPDKALDLFERMR 335
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG--- 224
N G +++ + SA A +L G + + E +++ V + IDM++KCG
Sbjct: 336 NEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVE 395
Query: 225 ------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
N + + ++ YA+ A F+ M R+++ +W VLIS + Q+G
Sbjct: 396 IARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGR 455
Query: 279 LEKPRFFF---------------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF- 320
++ F +S LS C+ G + G+ H + +
Sbjct: 456 PKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLA 515
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
++D+ SG + +A ++ + +K +W A++ H + A + ++ + V
Sbjct: 516 TSLIDMYSKSGDVEKAIEVFHSIGNK-DVFVWSAMIAGLAMHGRGEAAIELFLDMQETQV 574
Query: 381 K 381
K
Sbjct: 575 K 575
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1724
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 148/331 (44%), Gaps = 65/331 (19%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+K + +H + F SD+ + S I M+ KCG LN S +
Sbjct: 1267 LKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGD-----------LNSSNY-------- 1307
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F + + ++WN M++ HG G E L F E+ N G L ++ +A A+
Sbjct: 1308 ---IFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATAN 1364
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ LE G LH V+ + D+ V + +DMY KCG
Sbjct: 1365 LAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG----------------------- 1401
Query: 248 TQKADLAFELMS--RRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLL 292
+ D+ L R+ +SW +LISAF++ G +K R F FVSLL
Sbjct: 1402 -EMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLL 1460
Query: 293 SGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
S C+H G V +G Y+ +M + F + VC++DLLG SG L A+ I EMP P
Sbjct: 1461 SACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPN 1520
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ W +LL AC H N +LA +LL+LD
Sbjct: 1521 DLAWRSLLAACRIHGNLELARKTAEHLLELD 1551
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 140/331 (42%), Gaps = 62/331 (18%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G + +A +HG++ + + S + + I+ + K G++ A+
Sbjct: 246 GGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKD----------------- 288
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+ + M ++DL S +I+ G + + L F E+ G+ ++ + +
Sbjct: 289 -----LRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNI 343
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ G +H+ + +PS DV +G+ LIDMY A+
Sbjct: 344 CANLASFALGTQIHAFALKYQPSYDVAMGNALIDMY----------------------AK 381
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGV----------LEKPRFF---FFFVSL 291
G + A AF+ M +N+ISW LIS +++ G +E F F+SL
Sbjct: 382 SGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSL 441
Query: 292 LSGCSHSGPVTKGKHYFTAMA-KFT---YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
L CSH+G +G F M K+ ++ CMVDL GLL EA L+ ++ K
Sbjct: 442 LFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKH 501
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+WGA+LGA + L + NL +
Sbjct: 502 NASLWGAILGASSIYGYMSLGKEAASNLFNM 532
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 39/244 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M E D++SWN MIS HG E+L F + + +S ++ S +SV +
Sbjct: 1004 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDN 1063
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+WG +H VV + G++S++ I L+T+Y+E G ++
Sbjct: 1064 LKWGRGIHGLVVKL----------------------GLDSNVCICNTLLTLYSEAGRSED 1101
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-------------VLEKPRFFFFFVSLLSGCSH 297
A+L F+ M+ R++ISW +++ + Q G + K F S L+ CS+
Sbjct: 1102 AELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSN 1161
Query: 298 SGPVTKGK--HYFTAMAKF-TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ + K H +A F + +V + G G++ EAKK++ MP +P V W A
Sbjct: 1162 PECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNA 1220
Query: 355 LLGA 358
L+G
Sbjct: 1221 LIGG 1224
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 122/333 (36%), Gaps = 71/333 (21%)
Query: 50 FTYNTMING--GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
FTY + + +RCL M + + G ++K FV + + + +D H KCG ++ A
Sbjct: 132 FTYGSALRACTSLRCL-----DMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDAS 186
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
+F M ERD+VSWN MI GF ++ C F +
Sbjct: 187 ----------------------YLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSML 224
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
G + A A L +H + + G G D+
Sbjct: 225 RGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQL--------GYGSYDI-------- 268
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
+ L+ YA+ GS + A + M ++++ S LI+ ++ G+ F
Sbjct: 269 ------VTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLF 322
Query: 288 --------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCM----VDLLGL 329
S+L+ C++ G K+ + Y V M +D+
Sbjct: 323 KEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPS-YDVAMGNALIDMYAK 381
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
SG + +AK+ DEM K + W +L+ H
Sbjct: 382 SGEIEDAKRAFDEMEEK-NVISWTSLISGYAKH 413
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 70/317 (22%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
N+K +HGLV K S+ I + + ++ + G + AE
Sbjct: 1063 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAE------------------- 1103
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
++FQ M ERDL+SWN+M++ + G + L EL G ++ + +A+A +A +
Sbjct: 1104 ---LVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACS 1160
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ L + S++VH + + +G D + +G ALVTMY + G
Sbjct: 1161 NPECL-----IESKIVHA-----LIIVAGFHDFLI------------VGNALVTMYGKLG 1198
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAG-----------VLEK--PRFFFFFVSLLS 293
+A + M + + ++W LI ++ + EK P + VS+L
Sbjct: 1199 MMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLG 1258
Query: 294 GCS-------HSGPVTKGKHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPS 345
CS H P+ H + F Y ++ + G L + + D + +
Sbjct: 1259 ACSAPDDLLKHGMPI----HAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGN 1314
Query: 346 KPTCVIWGALLGACCSH 362
K + + W A++ A H
Sbjct: 1315 K-SPITWNAMVAANAHH 1330
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 57/277 (20%)
Query: 18 AQLISTCLISSIFLQLIDDDYRVFCDIGPRY----------LFTYNTMINGGVRCLCVGN 67
+ LI+ + + Q+ DDD + + G R +F + G+RCL N
Sbjct: 690 SALINETPVENFAEQVKDDDLKT-SNAGSRRWGCLDGDIAKVFLQQQHTDYGIRCLNAVN 748
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKC--GAVD---YAESAFLRMLNPSLFCWK 122
+ K F ++ + K+ +H C G+V+ + + + M + K
Sbjct: 749 FPL--------KGFSEITSQMAGKA---LHAFCIVGSVNLGIFQTNTLINMYS------K 791
Query: 123 FGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
FG I +F +M R+ SW+TM+S R G E + F ++W G + + A+
Sbjct: 792 FGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASL 851
Query: 182 FSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+A S Y + G +H VV GI + +G ALV
Sbjct: 852 ITACSRSGYMADEGFQVHGFVVK----------------------TGILGDVYVGTALVH 889
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
Y G A FE M N++SW L+ +S +G
Sbjct: 890 FYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSG 926
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 118 LFCWKFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
+F K G +I +F MPER +VSW M+S +++G + F ++ + G +
Sbjct: 73 IFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQF 132
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
Y +A A S+ L+ G + + ++FV S L+D + KC
Sbjct: 133 TYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKC------------- 179
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSG 294
G + A F M R+++SW +I ++ G + F F S+L G
Sbjct: 180 ---------GKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDS--FCMFRSMLRG 226
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++MP+ ++VSW +++ + G E L + + G + +AT S+ + D
Sbjct: 903 LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 962
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G + ++ G E S+ + +L++M++ S ++
Sbjct: 963 QVLGYQVLGHIIQY----------------------GFEDSVSVANSLISMFSSFSSVEE 1000
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGV 278
A F+ M+ ++ISW +ISA++ G+
Sbjct: 1001 ACYVFDHMNECDIISWNAMISAYAHHGL 1028
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 228 IESSIQIG----KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
I S+ +G L+ MY++ G+ + A F+ M RN SW ++S + + G+ E+
Sbjct: 771 IVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAV 830
Query: 284 FF-------------FFFVSLLSGCSHSGPVTKGK---HYFTAMAKFTYTCYF-VCMVDL 326
F SL++ CS SG + H F Y +V
Sbjct: 831 GLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHF 890
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G GL+ A+KL +EMP V W +L+
Sbjct: 891 YGSIGLVYNAQKLFEEMPDH-NVVSWTSLM 919
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
NG S + + L+ Y + G A F+ M R+++SW ++S +SQ G EK
Sbjct: 59 NGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVL 118
Query: 286 F 286
F
Sbjct: 119 F 119
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 186/417 (44%), Gaps = 67/417 (16%)
Query: 1 MKACGSLKSLPIARKIH----------AQLISTCLISSIFLQ-LIDDDYRVFCDIGPRYL 49
+K+CG L+ + ++H ++T LI + ++D Y+VF ++ R +
Sbjct: 117 IKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNV 176
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+ +ING + C G++ L L + D + I +++ + A
Sbjct: 177 VVWTAIINGYILC---GDVVSGRRLFDLAPE----RDVVMWSVLISGYIESKNMAAAREL 229
Query: 110 FLRMLNPSLFCWK-----FGIIRLLIMFQK----MPERDLVSWNTMISILTRHGFGFETL 160
F +M N W + + + MF+K MPER++ SWN +I ++G ETL
Sbjct: 230 FDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETL 289
Query: 161 CTFIELWNHGFGLSSMLYATA-FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+F + G + + A SA + + L+ G +H + ++FVG+ LIDM
Sbjct: 290 ESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDM 349
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KC G + A + F + R+++ISW +I+ + G
Sbjct: 350 YAKC----------------------GVIENAVVVFNCLDRKDIISWNTIINGLAIHGHA 387
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVC 322
F FV +LS C+H G V G YF +M ++ C
Sbjct: 388 PDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGC 447
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MVDLLG +GLL +A I +MP +P VIW ALLGAC + N ++AEL ++ L++L+
Sbjct: 448 MVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELE 504
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 35/238 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS-MLYATAFSARASVY 189
+F K+P+ + +WN M ++G +T+ F EL N G+ + + + +
Sbjct: 66 LFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGEL-NRIAGMPNCFTFPMIIKSCGKLE 124
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ G +H + FV + LIDMY K GC +E + ++
Sbjct: 125 GVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGC--VEDAYKV--------------- 167
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGP 300
F M RN++ W +I+ + G + R F + L+SG S
Sbjct: 168 -----FGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKN 222
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+ + F M T + M++ ++G + +K+ DEMP + W L+G
Sbjct: 223 MAAARELFDKMPNRD-TMSWNAMLNGYAVNGEVEMFEKVFDEMPER-NVFSWNGLIGG 278
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 160/353 (45%), Gaps = 24/353 (6%)
Query: 45 GPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD 104
GPR TM++ C + ++ HG V + +++ + I+M++KCG +
Sbjct: 336 GPRP--DRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQE 393
Query: 105 YAESAFLRMLNPSLFCWK---FGIIRLLIM------FQKMPERDLVSWNTMISILTRHGF 155
A F RMLN + W G +R M F MP+ DLVSWNTMI L +
Sbjct: 394 MACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESM 453
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
E + F + + G + SA + L+ +H + + D+ +G+
Sbjct: 454 FKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTA 513
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
L+DM+ +CG +S++Q+ +V + +A E N + L Q
Sbjct: 514 LVDMFARCG--DPQSAMQVFNKMVKRDVSAWTAAIGAMAME----GNGTGAIELFDEMLQ 567
Query: 276 AGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSG 331
G+ KP F V+LL+ SH G V +G H F +M ++ CMVDLLG +G
Sbjct: 568 QGI--KPDGVVF-VALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAG 624
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
LL EA LI+ M +P VIWG+LL AC H N +A + +LD + G
Sbjct: 625 LLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTG 677
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 133/348 (38%), Gaps = 61/348 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C+G +++ + + + + +DM++KCGA+D A
Sbjct: 263 CTCIGELELEV-------------NALMVNALVDMYMKCGAIDKARK------------- 296
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F + +++LV +NT++S R G E L E+ HG + +A
Sbjct: 297 ---------IFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSA 347
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-----CNGIESSIQIGK 236
SA + + D+ G H V+ V + +I+MY+KCG C + + +
Sbjct: 348 VSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTR 407
Query: 237 ----ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+L+ + G + A F M +++SW +I A Q + ++ F
Sbjct: 408 VSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSE 467
Query: 287 -------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEA 336
V + S C + G + K H + + + +VD+ G A
Sbjct: 468 GITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSA 527
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
++ ++M + W A +GA N A + +LQ +K G
Sbjct: 528 MQVFNKMVKRDVSA-WTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDG 574
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+HG + K F D + S I + +CG +D C +
Sbjct: 158 GFQVHGAIVKMGFERDMFVENSLIHFYGECGEID---------------CMRR------- 195
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F KM ER++VSW ++I + G E + F E+ G +S+ SA A + D
Sbjct: 196 VFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQD 255
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
L+ G + + + +E ++ + + L+DMY+KCG
Sbjct: 256 LQLGEQVCTCIGELELEVNALMVNALVDMYMKCG 289
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 116/300 (38%), Gaps = 67/300 (22%)
Query: 102 AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
+++YA+ A LF GI+ MF +++I + G G++ +
Sbjct: 83 SLEYAQKAL------ELFIEDNGIMGTHYMF-----------SSLIRGFSACGLGYKAIV 125
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F +L G + + SA L G +H +V M D+FV + LI Y
Sbjct: 126 VFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYG 185
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
+CG I+ ++ F+ MS RN++SW LI +++ G ++
Sbjct: 186 ECG--EIDCMRRV--------------------FDKMSERNVVSWTSLIGGYAKRGCYKE 223
Query: 282 PRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVD 325
FF V ++S C+ + G+ T + + + +VD
Sbjct: 224 AVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVD 283
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ G + +A+K+ DE CV +L YNT ++ V + L + + V G
Sbjct: 284 MYMKCGAIDKARKIFDE------CVDKNLVL------YNTIMSNYVRQGLAREVLAVLGE 331
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 167/381 (43%), Gaps = 56/381 (14%)
Query: 32 QLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAK 91
Q + D +VF ++ R + ++NT + VR G + A + + + VS ++
Sbjct: 178 QGLSDAKKVFDEMTTRDVVSWNTAMAAMVR---QGEVDAARSMFDEMPEKDTVSWNTM-- 232
Query: 92 SSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVS 142
+D + K G + A F RM ++ W K G + + ++F KMP ++LV+
Sbjct: 233 --LDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVT 290
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W M+S + G E F E+ + L + + +A A L G +H V
Sbjct: 291 WTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVR 350
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL-MSRR 261
+ S V + L+DM+ KCGC +AD F+ + +
Sbjct: 351 QRKLSRSTLVCNALMDMFCKCGC----------------------VNRADYIFDTEIVEK 388
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF 308
+++SW ++I F+ G EK F +++LS C+H G V +G+ +F
Sbjct: 389 DLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFF 448
Query: 309 TAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
M ++ CMVDLLG GL+ EA +I MP +P VIWG+LL AC H N
Sbjct: 449 ANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKN 508
Query: 365 TKLAELVMRNLLQLDVKVFGS 385
+ AEL + L L G+
Sbjct: 509 VEYAELAVNELSNLQPSSAGN 529
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 56/196 (28%)
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM---------------- 241
H+ VV + + D FVG+ LID Y K G+ + ++ + T
Sbjct: 152 HAHVVKLGSAEDTFVGNALIDAYSK--NQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQG 209
Query: 242 --------------------------YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
YA+ G +KA F+ M RN++SW ++SA+ +
Sbjct: 210 EVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCK 269
Query: 276 AGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDL 326
G +E R F + ++S C+ G V + FT M + +V +
Sbjct: 270 KGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSI 329
Query: 327 LGL---SGLLGEAKKL 339
L SG L K++
Sbjct: 330 LAACAESGSLALGKRI 345
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 113/443 (25%), Positives = 186/443 (41%), Gaps = 110/443 (24%)
Query: 1 MKACGSLKSLPI-ARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGP-- 46
+K+C +L SLPI +++H + T + F+Q LID+ ++F D P
Sbjct: 17 IKSCAAL-SLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLF-DENPQS 74
Query: 47 -RYLFTYNTMING--------------------GVR------------CLCVGNIKMALH 73
+ YN++++G GV C GN+ + +
Sbjct: 75 RKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMC 134
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG KF D S+ + M+VK G +D +F
Sbjct: 135 VHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRK----------------------LFD 172
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+MP + L++WN MI+ ++G L + E+ + GF + S+ A + L
Sbjct: 173 EMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSV 232
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G + ++ S + F+ + L++MY +C G+ +KA
Sbjct: 233 GKEVERKMEGFGFSSNPFLNNALVNMYARC----------------------GNLKKARD 270
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F+ M ++++SW +I + G E F FVS+LS CSH+G
Sbjct: 271 IFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGL 330
Query: 301 VTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
KG YF M + ++ CMVDLLG +G L EA++LI+ M + +WGALL
Sbjct: 331 TNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALL 390
Query: 357 GACCSHYNTKLAELVMRNLLQLD 379
GAC H N +LAEL +++L+
Sbjct: 391 GACKIHRNVELAELAFEQVIELE 413
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 127/315 (40%), Gaps = 63/315 (20%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE-RDL-VSWNTM 146
+ S I M+ KC +D A +F + P+ R L V +N++
Sbjct: 47 VQTSLISMYGKCSLIDNARK----------------------LFDENPQSRKLTVCYNSL 84
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
+S + + + F E+ G ++ + +L G +H V
Sbjct: 85 LSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGL 144
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
+D VG+ L+ MY+K G I G+ L F+ M R+ +I+W
Sbjct: 145 DMDSSVGNCLLTMYVKSG------EIDCGRKL----------------FDEMPRKGLITW 182
Query: 267 MVLISAFSQAG----VLE-----KPRFF----FFFVSLLSGCSHSGPVTKGKHYFTAMAK 313
+I+ ++Q G VLE + + F V +LS C+H G ++ GK M
Sbjct: 183 NAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEG 242
Query: 314 FTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
F ++ +V++ G L +A+ + D MP K + V W A++G H ++A
Sbjct: 243 FGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVK-SVVSWTAIIGGYGMHGQGEVAVG 301
Query: 371 VMRNLLQLDVKVFGS 385
+ +++ +K G+
Sbjct: 302 LFDEMIRGGIKPDGT 316
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 131/271 (48%), Gaps = 39/271 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP++D VSW M++ ++ G ETL FIE+ G ++ +A S A +
Sbjct: 214 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 273
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G LH R++ + FVG+ L+ MY KC G+ +
Sbjct: 274 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC----------------------GNMED 311
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A AFE M R+++SW +I+ +++ G ++ F V +L+ CSH
Sbjct: 312 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 371
Query: 298 SGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
SG V KG YF +M F T ++ CM+DLLG +G L EA L+ +MP +P +WG
Sbjct: 372 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 431
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALLGA H N +L + +L+ + G
Sbjct: 432 ALLGASRIHRNPELGRSAAEKIFELEPENAG 462
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 45/238 (18%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F PE+D VSWN M++ R+G +E F + +++A S Y +
Sbjct: 29 FDLAPEKDAVSWNGMLAAYVRNGR--------VEEARGLFNSRTEWDVISWNALMSGY-V 79
Query: 192 EWGPHLHSR-VVHMEPSLDVFVGSGLIDMYLKCGCNGIES----------SIQIGKALVT 240
+WG +R + P DV + ++ Y + G + +E+ + A+V+
Sbjct: 80 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG-DMVEARRLFDAAPVRDVFTWTAVVS 138
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGP 300
YA+ G ++A F+ M RN +SW +++A+ Q ++++ + F + + S
Sbjct: 139 GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS---- 194
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+ M+ +G+L EAK + D MP K V W A+L A
Sbjct: 195 -------------------WNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 232
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 41/255 (16%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP RD V++N MIS HG + L H F L+ A +++
Sbjct: 1 MPVRDSVTYNVMISSHANHG--------LVSLARHYFDLAPEKDAVSWNG---------- 42
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
L +V +G ++ + E + AL++ Y + G +A
Sbjct: 43 ------------MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAREL 90
Query: 255 FELMSRRNMISWMVLISAFSQAG-VLEKPRFF--------FFFVSLLSGCSHSGPVTKGK 305
F+ M R+++SW +++S +++ G ++E R F F + +++SG + +G + + +
Sbjct: 91 FDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEAR 150
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
F AM + + MV ++ EAK+L + MP + W +L
Sbjct: 151 RVFDAMPERNAVSWN-AMVAAYIQRRMMDEAKELFNMMPCR-NVASWNTMLTGYAQAGML 208
Query: 366 KLAELVMRNLLQLDV 380
+ A+ V + Q D
Sbjct: 209 EEAKAVFDTMPQKDA 223
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 134/357 (37%), Gaps = 76/357 (21%)
Query: 60 VRCLCVGNIKMALHL-HGLV---KKFYFVSDESIAKSSIDM---HVKCGAVDYAESAFLR 112
VR N+ ++ H HGLV + ++ ++ E A S M +V+ G V+ A F
Sbjct: 3 VRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS 62
Query: 113 MLNPSLFCWKF---GIIRLLIM------FQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
+ W G ++ M F +MP RD+VSWN M+S R G E F
Sbjct: 63 RTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF 122
Query: 164 -------IELWN---HGFGLSSMLYAT--AFSARASVYDLEWGPHLHSRVVH--MEPSLD 209
+ W G+ + ML F A + W + + + M+ + +
Sbjct: 123 DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKE 182
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
+F + C ++ ++T YA+ G ++A F+ M +++ +SW +
Sbjct: 183 LF-------NMMPC------RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAM 229
Query: 270 ISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY 316
++A+SQ G E+ F F +LS C+ + G + + Y
Sbjct: 230 LAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGY 289
Query: 317 -----------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
YF C G + +A+ +EM + V W ++ H
Sbjct: 290 GVGCFVGNALLAMYFKC--------GNMEDARNAFEEMEER-DVVSWNTMIAGYARH 337
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 156/356 (43%), Gaps = 64/356 (17%)
Query: 50 FTYNTMINGGVRCLCVGN-IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
FTY ++ V C + + +H + + + S I + +DM+ + G VDYA
Sbjct: 179 FTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYAS- 237
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+F MP R++VSW+ MI+ ++G FE L TF E+
Sbjct: 238 ---------------------YVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMT 276
Query: 169 HGFGLS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
S S+ + A AS+ LE G +H ++
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILR----------------------R 314
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G++S + + ALVTMY G F+ M R+++SW LIS++ G K F
Sbjct: 315 GLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIF 374
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGL 329
FVS+L CSH G V +GK F +M + ++ CMVDLLG
Sbjct: 375 EEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGR 434
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ L EA K++ +M ++P +WG+LLG+C H N +LAE R L L+ K G+
Sbjct: 435 ANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGN 490
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/393 (20%), Positives = 149/393 (37%), Gaps = 68/393 (17%)
Query: 6 SLKSLPIARKIHAQLISTCLISSIFLQ-LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLC 64
+L +L I+ A++ + LI S+ + + RV TY +I LC
Sbjct: 33 ALNNLSISSGAGAKISNNQLIQSLCKEGKLKQALRVLSQESSPSQQTYELLI------LC 86
Query: 65 VGN---IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
G+ + L +H + D +A I M+ G+VDYA
Sbjct: 87 CGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARK------------- 133
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F K +R + WN + LT G G E L + ++ G Y
Sbjct: 134 ---------VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYV 184
Query: 182 FSA----RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIE 229
A + L G +H+ + + V++ + L+DMY + GC NG+
Sbjct: 185 LKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMP 244
Query: 230 -SSIQIGKALVTMYAEGGSTQKADLAFELM------SRRNMISWMVLISAFSQAGVLEKP 282
++ A++ YA+ G +A F M S N ++ + ++ A + LE+
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQG 304
Query: 283 RFFFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL 329
R ++ +L++ G + G+ F M + ++ G+
Sbjct: 305 RLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWN-SLISSYGV 363
Query: 330 SGLLGEAKKLIDEM---PSKPTCVIWGALLGAC 359
G +A ++ +EM + PT V + ++LGAC
Sbjct: 364 HGYGRKAIQIFEEMLANGASPTPVTFVSVLGAC 396
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 151/343 (44%), Gaps = 70/343 (20%)
Query: 57 NGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP 116
+G +R VG +H L K +SD + S+ DM+ K G + A
Sbjct: 118 SGSLRSPLVGK-----QVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARK-------- 164
Query: 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
MF +MPER++ +WN +S G + L FIE G +
Sbjct: 165 --------------MFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDF 210
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ ++ SA A + LE G +H+ V ++FVGS L+DMY KC
Sbjct: 211 MVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKC------------- 257
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
GS + A+ AF+ M RN+++W +I ++ G + F
Sbjct: 258 ---------GSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRV 308
Query: 287 -----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEA 336
FV +LS CS +G V G F +M + Y ++ C+VDLLG +G++ +A
Sbjct: 309 APNYVTFVCVLSACSRAGSVNVGMEIFESM-RGRYGIEPGAEHYACVVDLLGRAGMVEQA 367
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ I +MP +PT +WGALLGA ++L ++ NL +LD
Sbjct: 368 YQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELD 410
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 94/249 (37%), Gaps = 39/249 (15%)
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
P R +V+W +I+ ++G L F + + + AF A S+ G
Sbjct: 69 PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK 128
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+H+ V DVFVG DMY K G T++A F
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGL----------------------TEEARKMF 166
Query: 256 ELMSRRNMISWMVLIS-------------AFSQAGVLEKPRFFFFFVSLLSGCSHSGPVT 302
+ M RN+ +W +S AF +A F S+LS C+ +
Sbjct: 167 DEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLE 226
Query: 303 KGKHYFT-AMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
GK T A+ FV +VD+ G G + +A++ DEMP + V W A++G
Sbjct: 227 VGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPER-NLVTWNAMIGGY 285
Query: 360 CSHYNTKLA 368
+A
Sbjct: 286 AHQGQADMA 294
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 52/135 (38%), Gaps = 17/135 (12%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPR 283
LV MY++ A L L R++++W LI+ Q G +P
Sbjct: 48 LVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPN 107
Query: 284 FFFFFVSLLSGCSHSGP-VTKGKHYFTAMAKFTYTCYFVCMV-DLLGLSGLLGEAKKLID 341
F F + + S P V K H A + C D+ +GL EA+K+ D
Sbjct: 108 DFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFD 167
Query: 342 EMPSKPTCVIWGALL 356
EMP + W A L
Sbjct: 168 EMPER-NIATWNAYL 181
>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1736
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 147/331 (44%), Gaps = 64/331 (19%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
+++ +H LV K+ D +I + + + KCG ++ E F RM
Sbjct: 607 EVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARM--------------- 651
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
RD VSWN+MIS + + + + G L S +AT SA ASV
Sbjct: 652 ------SETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASV 705
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG-IESSIQIGKALVTMYAEGGS 247
LE G +H+ CG +ES + +G ALV MY++ G
Sbjct: 706 ATLERGMEVHA-----------------------CGIRACLESDVVVGSALVDMYSKCGR 742
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSG 294
A FELM RN+ SW +IS +++ G EK P FV +LS
Sbjct: 743 IDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSA 802
Query: 295 CSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CSH G V +G +F +M++ +F CMVDLLG +G L E I+ MP KP +
Sbjct: 803 CSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVL 862
Query: 351 IWGALLGACC--SHYNTKLAELVMRNLLQLD 379
IW +LGACC + NT+L LL+L+
Sbjct: 863 IWRTVLGACCRANGRNTELGRRAAEMLLELE 893
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 30/178 (16%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T+++ C V ++ + +H + SD + + +DM+ KCG +DYA
Sbjct: 693 FTFATILSA---CASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASR- 748
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F+ MP R++ SWN+MIS RHG G + L F +
Sbjct: 749 ---------------------FFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLD 787
Query: 170 GFGLSSMLYATAFSARASVYDLEWG-PHLH--SRVVHMEPSLDVFVGSGLIDMYLKCG 224
G + + SA + V +E G H S V + P ++ F S ++D+ + G
Sbjct: 788 GQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHF--SCMVDLLGRAG 843
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 42/268 (15%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGF-ETLCTFIELWNHGFGLSSMLYATAFSARAS 187
L +F MPE D VSWN++I L+ + + F+++ G+GLS + + SA +S
Sbjct: 543 LKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSS 602
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ E +H+ V+ S D +G+ L+ Y KC G
Sbjct: 603 LSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKC----------------------GE 640
Query: 248 TQKADLAFELMSR-RNMISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLS 293
+ + F MS R+ +SW +IS + +L K F F ++LS
Sbjct: 641 MNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILS 700
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+ + +G + V +VD+ G + A + + MP +
Sbjct: 701 ACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVY 759
Query: 351 IWGALLGACCSH-YNTKLAELVMRNLLQ 377
W +++ H + K +L R +L
Sbjct: 760 SWNSMISGYARHGHGEKALKLFTRMMLD 787
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 138/365 (37%), Gaps = 61/365 (16%)
Query: 31 LQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKK----FYFVSD 86
L +D VF IG R ++N++I+ R G+ A L ++K F F +
Sbjct: 223 LDSANDARSVFDGIGIRNSISWNSIISVYSR---RGDAVSAYDLFSSMQKEGLGFSFKPN 279
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRML---NPSLFCWKFGIIRLLI------------- 130
E S I C +VD+ +ML S F + L+
Sbjct: 280 EYTFGSLIT--TACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAK 337
Query: 131 -MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
+F++M R++VS N ++ L + G F E+ + G++S Y SA +
Sbjct: 338 NIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDL-VGINSDSYVVLLSAFSEFS 396
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
LE G R VH + +GL D + + IG LV MYA+ G+
Sbjct: 397 VLEEGRR-KGREVHAH-----VIRTGLND-----------NKVAIGNGLVNMYAKSGAIA 439
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCS 296
A FELM ++ +SW LIS Q E F +S LS C+
Sbjct: 440 DACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCA 499
Query: 297 HSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + G+ K T ++ L +G E K+ MP V W
Sbjct: 500 SLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQ-VSWN 558
Query: 354 ALLGA 358
+++GA
Sbjct: 559 SVIGA 563
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 55/251 (21%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ M E+D VSWN++IS L ++ + +F + G S+ + S+ AS+
Sbjct: 444 VFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGW 503
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ G +H + + G+++ + + AL+ +YAE G +
Sbjct: 504 IMLGEQIHCDGLKL----------------------GLDTDVSVSNALLALYAETGCFTE 541
Query: 251 ADLAFELMSRRNMISWMVLISAF--SQAGVLEKPRFFF------------FFVSLLSGCS 296
F LM + +SW +I A S+A V + ++F F+++LS S
Sbjct: 542 CLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVS 601
Query: 297 HSG--PVTKGKHYF---------TAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
V+ H TA+ +CY C G + E +K+ M
Sbjct: 602 SLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKC--------GEMNECEKIFARMSE 653
Query: 346 KPTCVIWGALL 356
V W +++
Sbjct: 654 TRDEVSWNSMI 664
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 39/233 (16%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
K+ + +HGL+ K + SD + I M+ C +D A A
Sbjct: 191 KLGVQIHGLISKTRYGSDVVVCNVLISMYGSC--LDSANDA------------------- 229
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA--RA 186
+F + R+ +SWN++IS+ +R G F + G G S F +
Sbjct: 230 RSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITT 289
Query: 187 SVYDLEWG----PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN----------GIESSI 232
+ +++G + +RV D++V S L+ + + G G+ + +
Sbjct: 290 ACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVV 349
Query: 233 QIGKALVTMYAEGGSTQKADLAFEL--MSRRNMISWMVLISAFSQAGVLEKPR 283
+ +V + + A + E+ + N S++VL+SAFS+ VLE+ R
Sbjct: 350 SMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGR 402
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+++L+ G ++ + L+ +Y G A F+ MS RN+++W LIS ++Q G
Sbjct: 92 ELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNG 151
Query: 278 VLEK--PRF-----------FFFFVSLLSGCSHSGP 300
++ RF + F S L C SGP
Sbjct: 152 KPDEACARFRDMVRAGFIPNHYAFGSALRACQESGP 187
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 131/271 (48%), Gaps = 39/271 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP++D VSW M++ ++ G ETL FIE+ G ++ +A S A +
Sbjct: 339 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G LH R++ + FVG+ L+ MY KC G+ +
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC----------------------GNMED 436
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A AFE M R+++SW +I+ +++ G ++ F V +L+ CSH
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 496
Query: 298 SGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
SG V KG YF +M F T ++ CM+DLLG +G L EA L+ +MP +P +WG
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALLGA H N +L + +L+ + G
Sbjct: 557 ALLGASRIHRNPELGRSAAEKIFELEPENAG 587
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 41/259 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP RD V++N MIS HG + L H F L+ A +++
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHG--------LVSLARHYFDLAPEKDAVSWNG------ 167
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +V +G ++ + E AL++ Y + G +
Sbjct: 168 ----------------MLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSE 211
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF--------FFFVSLLSGCSHSGPV 301
A F+ M R+++SW +++S +++ G ++E R F F + +++SG + +G +
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGML 271
Query: 302 TKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+ + F AM + + MV ++ EAK+L + MP + W +L
Sbjct: 272 EEARRVFDAMPERNAVSWN-AMVAAYIQRRMMDEAKELFNMMPCR-NVASWNTMLTGYAQ 329
Query: 362 HYNTKLAELVMRNLLQLDV 380
+ A+ V + Q D
Sbjct: 330 AGMLEEAKAVFDTMPQKDA 348
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 145/400 (36%), Gaps = 97/400 (24%)
Query: 16 IHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLH 75
+HA +S+ L D +F ++ R TYN MI+ H
Sbjct: 107 LHALAVSSSLA---------DARGLFDEMPVRDSVTYNVMISSHAN-------------H 144
Query: 76 GLV---KKFYFVSDESIAKSSIDM---HVKCGAVDYAESAFLRMLNPSLFCWKF---GII 126
GLV + ++ ++ E A S M +V+ G V+ A F W G +
Sbjct: 145 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYV 204
Query: 127 RLLIM------FQKMPERDLVSWNTMISILTRHGFGFETLCTF-------IELWN---HG 170
+ M F +MP RD+VSWN M+S R G E F + W G
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSG 264
Query: 171 FGLSSMLYAT--AFSARASVYDLEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCN 226
+ + ML F A + W + + + M+ + ++F + C
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELF-------NMMPC--- 314
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
++ ++T YA+ G ++A F+ M +++ +SW +++A+SQ G E+ F
Sbjct: 315 ---RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 371
Query: 287 F-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-----------TCYFVC 322
F +LS C+ + G + + Y YF C
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC 431
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G + +A+ +EM + V W ++ H
Sbjct: 432 --------GNMEDARNAFEEMEER-DVVSWNTMIAGYARH 462
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 160/359 (44%), Gaps = 54/359 (15%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
+Y FT+ C ++ +HG V K D I + I ++ CG ++ A
Sbjct: 108 KYTFTFALK-----SCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDA 162
Query: 107 ESAFLRMLNPSLFCW--------KFGIIRLLI--MFQKMPERDLVSWNTMISILTRHGFG 156
RML + W + G++ L +F + P +++VSWN MI+ + G
Sbjct: 163 RHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRF 222
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L F ++ + G + + SA A V L G +H+ + S+D FV + L
Sbjct: 223 SEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATAL 282
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+DMY KC GS +KA F R+++ +W +IS S
Sbjct: 283 VDMYSKC----------------------GSIEKALEVFNSCLRKDISTWNSIISGLSTH 320
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
G + F FV +LS CS +G + +G+ F M +
Sbjct: 321 GSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEH 380
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ CMVDLLG GLL EA++L+ +MP K V+W +LLGAC +H N +LAE V + LL+L
Sbjct: 381 YGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLEL 439
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 129/327 (39%), Gaps = 65/327 (19%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
F + IA S + H + A+ YA S F R+ NP+ + W IIR PE L
Sbjct: 40 FAASRLIASVSTNSHAQ--AIPYAHSIFSRIPNPNSYMWNT-IIRAYAN-SPTPEAALTI 95
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
++ M+ H TF F L S S +E G +H V+
Sbjct: 96 FHQML-----HASVLPDKYTFT------FALKSC---------GSFSGVEEGRQIHGHVL 135
Query: 203 HMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEGGSTQKADL 253
D+F+ + LI +Y CGC +E + AL++ YAE G
Sbjct: 136 KTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERG------- 188
Query: 254 AFELMSRR--------NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
EL SRR N++SW +I+ +S AG + F VS+L
Sbjct: 189 LMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVL 248
Query: 293 SGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
S C+H G +++G+ H + + + +VD+ G + +A ++ + K
Sbjct: 249 SACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDIS 308
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLL 376
W +++ +H + + A + +L
Sbjct: 309 T-WNSIISGLSTHGSGQHALQIFSEML 334
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 150/347 (43%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C + +HG + K D + + +DM+ KCG + AE
Sbjct: 442 FTYGSVVKA---CAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKI 498
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
R+ E+ VSWN++IS + F ++
Sbjct: 499 HARL----------------------EEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEM 536
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + YAT A++ +E G +H++++ ++ DV++ S L+DMY KC
Sbjct: 537 GIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKC------ 590
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
G+ Q + L FE +R+ ++W +I A++ G+ EK F
Sbjct: 591 ----------------GNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEM 634
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
F+S+L C+H G V KG HYF M ++ CMVDLLG SG
Sbjct: 635 QLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQ 694
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ EA KLI+ MP + VIW LL C N ++AE +LLQLD
Sbjct: 695 VNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLD 741
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 125/308 (40%), Gaps = 61/308 (19%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+ LHGL K + +A + +DM+ KCGA ++ +
Sbjct: 359 GIQLHGLAVKCGLGFNICVANTILDMYGKCGA----------------------LMEACL 396
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++M RD VSWN +I+ ++ +TL F+ + Y + A A
Sbjct: 397 IFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQA 456
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +G +H R++ LD FVGS L+DMY KCG + M AE +
Sbjct: 457 LNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCG--------------MLMEAEKIHAR- 501
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
+ + +SW +IS FS E + +F + ++L C++
Sbjct: 502 -------LEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCAN 554
Query: 298 SGPVTKGKHYFTAMAKFT-YTCYFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ GK + K ++ ++ +VD+ G + +++ + ++ P K V W A
Sbjct: 555 MATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAP-KRDYVTWSA 613
Query: 355 LLGACCSH 362
++ A H
Sbjct: 614 MICAYAYH 621
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/439 (20%), Positives = 161/439 (36%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+KAC ++ + ++H I + + + +DD +RVF ++ R L
Sbjct: 145 LKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNL 204
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++ +I G V+ C + K+ LHG
Sbjct: 205 VCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGH 264
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K F D I +++DM+ KC RM + WK +F +P
Sbjct: 265 ALKSDFAYDSIIGTATLDMYAKCE----------RMFD----AWK--------VFNTLPN 302
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
S+N +I R G + L F L + G + + A +A + + G L
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQL 362
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H V ++ V + ++DMY KC G+ +A L FE
Sbjct: 363 HGLAVKCGLGFNICVANTILDMYGKC----------------------GALMEACLIFEE 400
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKG 304
M RR+ +SW +I+A Q + K F + S++ C+ + G
Sbjct: 401 MERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYG 460
Query: 305 KHYFTAMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+ K +FV +VD+ G G+L EA+K+ + K T V W +++ S
Sbjct: 461 TEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEK-TTVSWNSIISGFSS 519
Query: 362 HYNTKLAELVMRNLLQLDV 380
++ A+ +L++ +
Sbjct: 520 QKQSENAQRYFSQMLEMGI 538
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 38/229 (16%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---FGIIRLLIM------FQ 133
FV +A + + K ++YA F RM + W FG + M F
Sbjct: 37 FVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFD 96
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
MPERD+VSWN+++S +G +++ F+ + + +A A + + D
Sbjct: 97 SMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGL 156
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H + M DV GS L+DMY KC +K D
Sbjct: 157 GLQVHCLAIQMGFENDVVTGSALVDMYSKC-------------------------KKLDD 191
Query: 254 AFEL---MSRRNMISWMVLISAFSQAG-VLEKPRFFFFFVSLLSGCSHS 298
AF + M RN++ W +I+ + Q +E + F + + G S S
Sbjct: 192 AFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS 240
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 127/267 (47%), Gaps = 40/267 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP++D VSW TMIS ++ E L F + G + + SA ++
Sbjct: 354 LFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSS 413
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H + + ++ V +G+ LIDMY+KCGC +ES++++
Sbjct: 414 LEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGC--LESALEV---------------- 455
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCS 296
F+ M R W +I + G++ K F F +LS C
Sbjct: 456 ----FDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACR 511
Query: 297 HSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H+G V +G+H+F M + ++ CMVDLLG +G + EA+ LI+ MP P W
Sbjct: 512 HAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAW 571
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
GALLG+C H + ++ E V R L+ LD
Sbjct: 572 GALLGSCWKHGDNEVGERVGRKLVNLD 598
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/344 (20%), Positives = 128/344 (37%), Gaps = 42/344 (12%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
R L+ N +++ C C+G+ + V V D + + +V+ VD A
Sbjct: 136 RNLYLANALMSMYSACGCLGDARK-------VFDAGPVWDAVSWNTILAAYVQAEDVDQA 188
Query: 107 ESAFLRMLNP---------SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
F RM SLF + + +F + +D+ +W MIS R+G
Sbjct: 189 VGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFA 248
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E L F ++ G+ + + +A A + G H + V + LI
Sbjct: 249 EALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALI 308
Query: 218 DMYLK----CGCNGIESSIQI-----GKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
MY + S Q +++ Y + GS + A F +M ++ +SW
Sbjct: 309 HMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTT 368
Query: 269 LISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315
+IS Q + F VS++S C++ + +GK + +
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQ 428
Query: 316 YTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
YT + ++D+ G L A ++ D M + T W A++
Sbjct: 429 YTITVILGTSLIDMYMKCGCLESALEVFDTMEERGT-PCWNAVI 471
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 167/381 (43%), Gaps = 56/381 (14%)
Query: 32 QLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAK 91
Q + D +VF ++ R + ++NT + VR G + A + + + VS ++
Sbjct: 250 QGLSDAKKVFDEMTTRDVVSWNTAMAAMVR---QGEVDAARSMFDEMPEKDTVSWNTM-- 304
Query: 92 SSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVS 142
+D + K G + A F RM ++ W K G + + ++F KMP ++LV+
Sbjct: 305 --LDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVT 362
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W M+S + G E F E+ + L + + +A A L G +H V
Sbjct: 363 WTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVR 422
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL-MSRR 261
+ S V + L+DM+ KCGC +AD F+ + +
Sbjct: 423 QRKLSRSTLVCNALMDMFCKCGC----------------------VNRADYIFDTEIVEK 460
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF 308
+++SW ++I F+ G EK F +++LS C+H G V +G+ +F
Sbjct: 461 DLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFF 520
Query: 309 TAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
M ++ CMVDLLG GL+ EA +I MP +P VIWG+LL AC H N
Sbjct: 521 ANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKN 580
Query: 365 TKLAELVMRNLLQLDVKVFGS 385
+ AEL + L L G+
Sbjct: 581 VEYAELAVNELSNLQPSSAGN 601
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 56/196 (28%)
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM---------------- 241
H+ VV + + D FVG+ LID Y K G+ + ++ + T
Sbjct: 224 HAHVVKLGSAEDTFVGNALIDAYSK--NQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQG 281
Query: 242 --------------------------YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
YA+ G +KA F+ M RN++SW ++SA+ +
Sbjct: 282 EVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCK 341
Query: 276 AGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDL 326
G +E R F + ++S C+ G V + FT M + +V +
Sbjct: 342 KGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSI 401
Query: 327 LGL---SGLLGEAKKL 339
L SG L K++
Sbjct: 402 LAACAESGSLALGKRI 417
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 179/439 (40%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+ C + ++L + +HAQ ++ L+ I + I+ RVF ++ R +
Sbjct: 266 LDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDV 325
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++ MI G G++ C N+ A +H
Sbjct: 326 VSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQ 385
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V F +D ++ + + M+ KCGA+ A +F MP
Sbjct: 386 VDIAGFGTDLLVSTALVHMYAKCGAIKDARQ----------------------VFDAMPR 423
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VSW+ MI +G+G E TF + + Y +A + L+ G +
Sbjct: 424 RDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEI 483
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
+++ + + + S + +G AL+ M A+ GS ++A F+
Sbjct: 484 YTQAIKAD----------------------LVSHVPLGNALIIMNAKHGSVERARYIFDT 521
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M RR++I+W +I +S G + + F FV +LS CS +G V +G
Sbjct: 522 MVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEG 581
Query: 305 KHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+ +FT + + + CMVDLLG +G L EA+ LI MP KPT IW +LL AC
Sbjct: 582 RRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACR 641
Query: 361 SHYNTKLAELVMRNLLQLD 379
H N +AE L +D
Sbjct: 642 IHGNLDVAERAAERCLMID 660
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/338 (20%), Positives = 136/338 (40%), Gaps = 65/338 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +H V FVSD I + + M+VK G++D A
Sbjct: 168 CSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQ------------- 214
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F + RD+ ++N M+ + G + F + G + + + +
Sbjct: 215 ---------VFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSI 265
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ L WG +H++ ++ +GL+D I++ +L+ M
Sbjct: 266 LDGCWTPEALAWGKAVHAQCMN----------AGLVD------------DIRVATSLIRM 303
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
Y GS + A F+ M R+++SW V+I +++ G +E F +
Sbjct: 304 YTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITY 363
Query: 289 VSLLSGCSHSGPVTKGK--HYFTAMAKF-TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+ +++ C+ S + + H +A F T +V + G + +A+++ D MP
Sbjct: 364 MHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPR 423
Query: 346 KPTCVIWGALLGACCSH-YNTKLAE---LVMRNLLQLD 379
+ V W A++GA + Y T+ E L+ R+ ++ D
Sbjct: 424 RDV-VSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPD 460
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 35/178 (19%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + + +V+WN +I+ + G E F ++ + G S + + + A +S
Sbjct: 114 IFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAG 173
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L WG +H++VV G S +IG ALV+MY +GGS
Sbjct: 174 LNWGKEVHAQVV----------------------TAGFVSDFRIGTALVSMYVKGGSMDD 211
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGC 295
A F+ + R++ ++ V++ ++++G EK F+ F+S+L GC
Sbjct: 212 ARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 138/299 (46%), Gaps = 54/299 (18%)
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
+Y ES F+ +L+C +F + E L SWN +IS L++ G + + F
Sbjct: 132 EYCESGFI-----NLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVF 186
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS--LDVFVGSGLIDMYL 221
+++ HGF + + SA S+ DL LH V + + + + + LIDMY
Sbjct: 187 VDMKRHGFEPDGITMVSVMSACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYG 246
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL---MSRRNMISWMVLISAFSQAGV 278
KCG + DLA+E+ M RN+ SW +I ++ G
Sbjct: 247 KCG-------------------------RMDLAYEVFATMEDRNVSSWTSMIVGYAMHGH 281
Query: 279 LE--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYF 320
+ KP + F+ +LS C H G V +G+ YF M ++
Sbjct: 282 AKEALGCFHCMRESGVKPN-YVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHY 340
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
CMVDLLG +GL +A+++++EMP KP V+WG L+GAC H N +AE V NL L+
Sbjct: 341 GCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMAEWVAENLQALE 399
>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
Length = 1166
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 148/331 (44%), Gaps = 65/331 (19%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+K + +H + F SD+ + S I M+ KCG LN S +
Sbjct: 617 LKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGD-----------LNSSNY-------- 657
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F + + ++WN M++ HG G E L F E+ N G L ++ +A A+
Sbjct: 658 ---IFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATAN 714
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ LE G LH V+ + D+ V + +DMY KCG
Sbjct: 715 LAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG----------------------- 751
Query: 248 TQKADLAFELMS--RRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLL 292
+ D+ L R+ +SW +LISAF++ G +K R F FVSLL
Sbjct: 752 -EMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLL 810
Query: 293 SGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
S C+H G V +G Y+ +M + F + VC++DLLG SG L A+ I EMP P
Sbjct: 811 SACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPN 870
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ W +LL AC H N +LA +LL+LD
Sbjct: 871 DLAWRSLLAACRIHGNLELARKTAEHLLELD 901
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 39/244 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M E D++SWN MIS HG E+L F + + +S ++ S +SV +
Sbjct: 354 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDN 413
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+WG +H VV + G++S++ I L+T+Y+E G ++
Sbjct: 414 LKWGRGIHGLVVKL----------------------GLDSNVCICNTLLTLYSEAGRSED 451
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-------------VLEKPRFFFFFVSLLSGCSH 297
A+L F+ M+ R++ISW +++ + Q G + K F S L+ CS+
Sbjct: 452 AELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSN 511
Query: 298 SGPVTKGK--HYFTAMAKF-TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ + K H +A F + +V + G G++ EAKK++ MP +P V W A
Sbjct: 512 PECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNA 570
Query: 355 LLGA 358
L+G
Sbjct: 571 LIGG 574
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 70/317 (22%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
N+K +HGLV K S+ I + + ++ + G + AE
Sbjct: 413 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAE------------------- 453
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
++FQ M ERDL+SWN+M++ + G + L EL G ++ + +A+A +A +
Sbjct: 454 ---LVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACS 510
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ L + S++VH + + +G D + +G ALVTMY + G
Sbjct: 511 NPECL-----IESKIVHA-----LIIVAGFHDFLI------------VGNALVTMYGKLG 548
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAG-----------VLEK--PRFFFFFVSLLS 293
+A + M + + ++W LI ++ + EK P + VS+L
Sbjct: 549 MMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLG 608
Query: 294 GCS-------HSGPVTKGKHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPS 345
CS H P+ H + F Y ++ + G L + + D + +
Sbjct: 609 ACSAPDDLLKHGMPI----HAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGN 664
Query: 346 KPTCVIWGALLGACCSH 362
K + + W A++ A H
Sbjct: 665 K-SPITWNAMVAANAHH 680
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 57/277 (20%)
Query: 18 AQLISTCLISSIFLQLIDDDYRVFCDIGPRY----------LFTYNTMINGGVRCLCVGN 67
+ LI+ + + Q+ DDD + + G R +F + G+RCL N
Sbjct: 40 SALINETPVENFAEQVKDDDLKT-SNAGSRRWGCLDGDIAKVFLQQQHTDYGIRCLNAVN 98
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKC--GAVD---YAESAFLRMLNPSLFCWK 122
+ K F ++ + K+ +H C G+V+ + + + M + K
Sbjct: 99 FPL--------KGFSEITSQMAGKA---LHAFCIVGSVNLGIFQTNTLINMYS------K 141
Query: 123 FGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
FG I +F +M R+ SW+TM+S R G E + F ++W G + + A+
Sbjct: 142 FGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASL 201
Query: 182 FSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+A S Y + G +H VV GI + +G ALV
Sbjct: 202 ITACSRSGYMADEGFQVHGFVVK----------------------TGILGDVYVGTALVH 239
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
Y G A FE M N++SW L+ +S +G
Sbjct: 240 FYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSG 276
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++MP+ ++VSW +++ + G E L + + G + +AT S+ + D
Sbjct: 253 LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 312
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G + ++ G E S+ + +L++M++ S ++
Sbjct: 313 QVLGYQVLGHIIQY----------------------GFEDSVSVANSLISMFSSFSSVEE 350
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298
A F+ M+ ++ISW +ISA++ G+ + F ++ L ++S
Sbjct: 351 ACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 398
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 228 IESSIQIG----KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
I S+ +G L+ MY++ G+ + A F+ M RN SW ++S + + G+ E+
Sbjct: 121 IVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAV 180
Query: 284 FF-------------FFFVSLLSGCSHSGPVTKGK---HYFTAMAKFTYTCYF-VCMVDL 326
F SL++ CS SG + H F Y +V
Sbjct: 181 GLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHF 240
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G GL+ A+KL +EMP V W +L+
Sbjct: 241 YGSIGLVYNAQKLFEEMPDH-NVVSWTSLM 269
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 127/267 (47%), Gaps = 40/267 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP++D VSW TMIS ++ E L F + G + + SA ++
Sbjct: 354 LFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSS 413
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H + + ++ V +G+ LIDMY+KCGC +ES++++
Sbjct: 414 LEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGC--LESALEV---------------- 455
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCS 296
F+ M R W +I + G++ K F F +LS C
Sbjct: 456 ----FDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACR 511
Query: 297 HSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H+G V +G+H+F M + ++ CMVDLLG +G + EA+ LI+ MP P W
Sbjct: 512 HAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAW 571
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
GALLG+C H + ++ E V R L+ LD
Sbjct: 572 GALLGSCWKHGDNEVGERVGRKLVNLD 598
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/344 (20%), Positives = 128/344 (37%), Gaps = 42/344 (12%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
R L+ N +++ C C+G+ + V V D + + +V+ VD A
Sbjct: 136 RNLYLANALMSMYSACGCLGDARK-------VFDAGPVWDAVSWNTILAAYVQAEDVDQA 188
Query: 107 ESAFLRMLNP---------SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
F RM SLF + + +F + +D+ +W MIS R+G
Sbjct: 189 VGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFA 248
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E L F ++ G+ + + +A A + G H + V + LI
Sbjct: 249 EALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALI 308
Query: 218 DMYLK----CGCNGIESSIQI-----GKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
MY + S Q +++ Y + GS + A F +M ++ +SW
Sbjct: 309 HMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTT 368
Query: 269 LISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315
+IS Q + F VS++S C++ + +GK + +
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQ 428
Query: 316 YTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
YT + ++D+ G L A ++ D M + T W A++
Sbjct: 429 YTITVILGTSLIDMYMKCGCLESALEVFDTMEERGT-PCWNAVI 471
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 131/271 (48%), Gaps = 39/271 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP++D VSW M++ ++ G ETL FIE+ G ++ +A S A +
Sbjct: 339 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G LH R++ + FVG+ L+ MY KC G+ +
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC----------------------GNMED 436
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A AFE M R+++SW +I+ +++ G ++ F V +L+ CSH
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 496
Query: 298 SGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
SG V KG YF +M F T ++ CM+DLLG +G L EA L+ +MP +P +WG
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALLGA H N +L + +L+ + G
Sbjct: 557 ALLGASRIHRNPELGRSAAEKIFELEPENAG 587
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 41/259 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP RD V++N MIS HG + L H F L+ A +++
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHG--------LVSLARHYFDLAPEKDAVSWNG------ 167
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +V +G ++ + E + AL++ Y + G +
Sbjct: 168 ----------------MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF--------FFFVSLLSGCSHSGPV 301
A F+ M R+++SW +++S +++ G ++E R F F + +++SG + +G +
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGML 271
Query: 302 TKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+ + F AM + + MV ++ EAK+L + MP + W +L
Sbjct: 272 EEARRVFDAMPERNAVSWN-AMVAAYIQRRMMDEAKELFNMMPCR-NVASWNTMLTGYAQ 329
Query: 362 HYNTKLAELVMRNLLQLDV 380
+ A+ V + Q D
Sbjct: 330 AGMLEEAKAVFDTMPQKDA 348
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 146/400 (36%), Gaps = 97/400 (24%)
Query: 16 IHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLH 75
+HA +S+ L D +F ++ R TYN MI+ H
Sbjct: 107 LHALAVSSSLA---------DARGLFDEMPVRDSVTYNVMISSHAN-------------H 144
Query: 76 GLV---KKFYFVSDESIAKSSIDM---HVKCGAVDYAESAFLRMLNPSLFCWKF---GII 126
GLV + ++ ++ E A S M +V+ G V+ A F + W G +
Sbjct: 145 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYV 204
Query: 127 RLLIM------FQKMPERDLVSWNTMISILTRHGFGFETLCTF-------IELWN---HG 170
+ M F +MP RD+VSWN M+S R G E F + W G
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSG 264
Query: 171 FGLSSMLYAT--AFSARASVYDLEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCN 226
+ + ML F A + W + + + M+ + ++F + C
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELF-------NMMPC--- 314
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
++ ++T YA+ G ++A F+ M +++ +SW +++A+SQ G E+ F
Sbjct: 315 ---RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 371
Query: 287 F-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-----------TCYFVC 322
F +LS C+ + G + + Y YF C
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC 431
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G + +A+ +EM + V W ++ H
Sbjct: 432 --------GNMEDARNAFEEMEER-DVVSWNTMIAGYARH 462
>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
Length = 913
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 147/331 (44%), Gaps = 64/331 (19%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
+++ +H LV K+ D +I + + + KCG ++ E F RM
Sbjct: 455 EVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARM--------------- 499
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
RD VSWN+MIS + + + + G L S +AT SA ASV
Sbjct: 500 ------SETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASV 553
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG-IESSIQIGKALVTMYAEGGS 247
LE G +H+ CG +ES + +G ALV MY++ G
Sbjct: 554 ATLERGMEVHA-----------------------CGIRACLESDVVVGSALVDMYSKCGR 590
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSG 294
A FELM RN+ SW +IS +++ G EK P FV +LS
Sbjct: 591 IDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSA 650
Query: 295 CSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CSH G V +G +F +M++ +F CMVDLLG +G L E I+ MP KP +
Sbjct: 651 CSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVL 710
Query: 351 IWGALLGACC--SHYNTKLAELVMRNLLQLD 379
IW +LGACC + NT+L LL+L+
Sbjct: 711 IWRTVLGACCRANGRNTELGRRAAEMLLELE 741
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 122/318 (38%), Gaps = 51/318 (16%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL---------LIMFQKMPER 138
+I ++M+ K GA+ A S F M+ W I L MF MPE
Sbjct: 341 AIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEY 400
Query: 139 DLVSWNTMISILTRHGFGF-ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D VSWN++I L+ + + F+++ G+GLS + + SA +S+ E +
Sbjct: 401 DQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQI 460
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ V+ S D +G+ L+ Y KC G + + F
Sbjct: 461 HALVLKYCLSDDTAIGNALLSCYGKC----------------------GEMNECEKIFAR 498
Query: 258 MSR-RNMISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLSGCSHSGPVTK 303
MS R+ +SW +IS + +L K F F ++LS C+ + +
Sbjct: 499 MSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLER 558
Query: 304 GKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
G + V +VD+ G + A + + MP + W +++
Sbjct: 559 GMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVYSWNSMISGYA 617
Query: 361 SH-YNTKLAELVMRNLLQ 377
H + K +L R +L
Sbjct: 618 RHGHGEKALKLFTRMMLD 635
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 106/270 (39%), Gaps = 54/270 (20%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
K+ + +HGL+ K + SD + I M+ C +D A A
Sbjct: 219 KLGVQIHGLISKTRYGSDVVVCNVLISMYGSC--LDSANDA------------------- 257
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F + R+ +SWN++IS+ +R G F + G G S AFS + +
Sbjct: 258 RSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFS-FKPNDAFSEFSVL 316
Query: 189 YD-LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ G +H+ V+ +GL D + + IG LV MYA+ G+
Sbjct: 317 EEGRRKGREVHAHVIR----------TGLND-----------NKVAIGNGLVNMYAKSGA 355
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV---------SLLSGCSHS 298
A FELM ++ +SW LIS Q E F + S++ S S
Sbjct: 356 IADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDS 415
Query: 299 -GPVTKGKHYFTAMAKFTYTCYFVCMVDLL 327
V++ YF M + + V +++L
Sbjct: 416 EASVSQAVKYFLQMMRGGWGLSRVTFINIL 445
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 30/178 (16%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T+++ C V ++ + +H + SD + + +DM+ KCG +DYA
Sbjct: 541 FTFATILSA---CASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASR- 596
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F+ MP R++ SWN+MIS RHG G + L F +
Sbjct: 597 ---------------------FFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLD 635
Query: 170 GFGLSSMLYATAFSARASVYDLEWG-PHLH--SRVVHMEPSLDVFVGSGLIDMYLKCG 224
G + + SA + V +E G H S V + P ++ F S ++D+ + G
Sbjct: 636 GQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHF--SCMVDLLGRAG 691
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+++L+ G ++ + L+ +Y G A F+ MS RN+++W LIS ++Q G
Sbjct: 120 ELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNG 179
Query: 278 VLEK--PRF-----------FFFFVSLLSGCSHSGP 300
++ RF + F S L C SGP
Sbjct: 180 KPDEACARFRDMVRAGFIPNHYAFGSALRACQESGP 215
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 159/358 (44%), Gaps = 48/358 (13%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM+ + C +G +A + +++ D + + IDM+ + G V A F +M
Sbjct: 180 TMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQM 239
Query: 114 LNPSLFCWK-----FGIIRLLI----MFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
+L W +G L+ +F M +RD++SW MI+ ++ G E L F
Sbjct: 240 QWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFK 299
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
E+ + A+ SA A L+ G H + + D++VG+ LIDMY KCG
Sbjct: 300 EMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCG 359
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF 284
+E ++++ F+ M +++ +SW +IS + G +
Sbjct: 360 V--VEKALEV--------------------FKEMRKKDSVSWTSIISGLAVNGFADSALD 397
Query: 285 FF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLL 327
+F FV +L C+H+G V KG YF +M K ++ C+VDLL
Sbjct: 398 YFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLL 457
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
SG L A + I EMP P VIW LL A H N LAE+ + LL+LD G+
Sbjct: 458 SRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGN 515
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 105/272 (38%), Gaps = 39/272 (14%)
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
I++ +FQ++ L WN MI + E + + ++ G +++ Y F A
Sbjct: 27 ILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKA 86
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A V D+ G +H+RV+ + ++V + LI+MY CG G+ +
Sbjct: 87 CARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKV------------ 134
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQA-------GVLEKPRF------FFFFVSL 291
F+ M R+++SW L+ + Q GV E R V +
Sbjct: 135 ----------FDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKV 184
Query: 292 LSGCSHSGP--VTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
+ C+ G V + Y ++D+ G GL+ A+ + D+M +
Sbjct: 185 VLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWR-N 243
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
V W A++ N A + + Q DV
Sbjct: 244 LVSWNAMIMGYGKAGNLVAARELFDAMSQRDV 275
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 158/358 (44%), Gaps = 48/358 (13%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM+ + C +G + + +++ D + + IDM+ + VD A F RM
Sbjct: 898 TMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRM 957
Query: 114 LNPSLFCWK-----FGIIRLLI----MFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
+ ++ W +G L+ +F MP RD++SW +MIS ++ G + + F
Sbjct: 958 RDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQ 1017
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
E+ + A+ SA A + L+ G +H + + + D++VG+ LIDMY C
Sbjct: 1018 EMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMY--CK 1075
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF 284
C +E + + FE M +R+ +SW +I+ + G +
Sbjct: 1076 CGAVEKGLSV--------------------FEEMGKRDSVSWTSVIAGLAVNGSADSALN 1115
Query: 285 FF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLL 327
F FV +L C+H+G V KG YF +M + ++ C+VDLL
Sbjct: 1116 LFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLL 1175
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
SG LG A + I MP P V+W LL A H N LAE+ + LL+ D G+
Sbjct: 1176 SRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGN 1233
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 117/274 (42%), Gaps = 47/274 (17%)
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
FC + G R + F +M ERDLVSWN++I R E L F E+ ++
Sbjct: 843 FC-ELGFARKV--FDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTM 899
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPS---LDVFVGSGLIDMYLKCGCNGIESSIQIG 235
A + EWG + + + ++E + +DV++G+ LIDMY G S + +
Sbjct: 900 VKVVLACTVLG--EWGV-VDAMIEYIEENKVEVDVYLGNTLIDMY------GRRSMVDLA 950
Query: 236 K---------------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+ A++ Y + G+ A F+ M R++ISW +IS++SQAG
Sbjct: 951 RRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFG 1010
Query: 281 KP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMV 324
K R F S+LS C+H G + G+ + K+ ++
Sbjct: 1011 KAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALI 1070
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
D+ G + + + +EM K V W +++
Sbjct: 1071 DMYCKCGAVEKGLSVFEEM-GKRDSVSWTSVIAG 1103
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 112/444 (25%), Positives = 181/444 (40%), Gaps = 104/444 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLI-----STCLISSIFLQL------IDDDYRVFCDIGPRYL 49
+ ACGSL +L ++IHA ++ S +S+ ++ D VF + R +
Sbjct: 237 LSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDV 296
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
+NTMI G V C G + +H
Sbjct: 297 IAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHAR 356
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K VSD + I+M+ K G++ A +F +MP+
Sbjct: 357 AAKDGLVSDVRFGNALINMYSKAGSMKDARQ----------------------VFDRMPK 394
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VSW T++ E+ TF ++ G + + Y A ++ L+WG +
Sbjct: 395 RDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEI 454
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ VV D+ V + L+ MY KCG +E +I++ FE
Sbjct: 455 HAEVVKAGLLADLAVTNALMSMYFKCG--SVEDAIRV--------------------FEG 492
Query: 258 MSRRNMISWMVLISAFSQAGV-LEKPRFFFF------------FVSLLSGCSHSGPVTKG 304
MS R++++W LI Q G LE + + FV++LS C V +G
Sbjct: 493 MSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEG 552
Query: 305 KHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+ F M+K ++ CMVD+L +G L EA+ +I +P KP+ +WGALL AC
Sbjct: 553 RRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACR 612
Query: 361 SHYNTKLAELVMRNLLQLDVKVFG 384
H N ++ E + L+L+ + G
Sbjct: 613 IHCNVEIGERAAEHCLKLEPQNAG 636
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 168/398 (42%), Gaps = 68/398 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLIS-----TCLISSIFLQL------IDDDYRVFCDIGPRYL 49
+++C K L + +++H ++ I++ L+L +++ ++F + +
Sbjct: 35 LQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSV 94
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVK-------KFYFVSDESIAKSSI------DM 96
++N MI+G G + A +L L++ KF FVS S S ++
Sbjct: 95 VSWNVMISGYAH---RGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREI 151
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGF 155
HV+ A + S++ K G +R +F M RD VSW T+ G+
Sbjct: 152 HVRVMEAGLANDTTVGNALISMYA-KCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 210
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
G E+L T+ + S + Y SA S+ LE G +H+ +V E DV V +
Sbjct: 211 GEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTA 270
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
L MY+KC G+ + A FE +S R++I+W +I F
Sbjct: 271 LTKMYMKC----------------------GAFKDAREVFECLSYRDVIAWNTMIRGFVD 308
Query: 276 AGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCY 319
+G LE+ F + ++LS C+ G + +GK AK + +
Sbjct: 309 SGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRF 368
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
++++ +G + +A+++ D MP K V W LLG
Sbjct: 369 GNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLG 405
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 180/447 (40%), Gaps = 106/447 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+ C S ++ +++HA +I TC ++L+ + D RV ++ R +
Sbjct: 17 LTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNV 76
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++ MI+G + C ++ +H L
Sbjct: 77 VSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSL 136
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V K F S + S +DM+ K G + A +F +PE
Sbjct: 137 VIKTSFESHIFVGSSLLDMYAKAGKICEARR----------------------VFDGLPE 174
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VS +IS + G E L F L G + + YA+ +A + + L+ G +
Sbjct: 175 RDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQV 234
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
HS V+ + V + + LIDMY KCG S + F+
Sbjct: 235 HSHVLRAKLPFYVVLQNSLIDMYSKCG----------------------SLTYSRRIFDS 272
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTK 303
M R +ISW ++ +S+ G+ + F F+++LSGCSH G +
Sbjct: 273 MPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDR 332
Query: 304 GKHYFTAMAK-----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F M ++ C+VDL G +G + EA + I +MP +PT IWG+LLGA
Sbjct: 333 GLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGA 392
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H N + E V R LL+++ + G+
Sbjct: 393 CRVHQNVHIGEFVARRLLEIESENAGN 419
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 111/439 (25%), Positives = 183/439 (41%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISS-IFLQLI-----------DDDYRVFCDIGPRY 48
+K C L + R +HA L+ + + + + LQ I DD R+F ++ +
Sbjct: 94 LKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKD 153
Query: 49 LFTYNTMINGG-------------VRCLCVG-------------------NIKMALHLHG 76
+ T+ +I G + L +G + LH
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHA 213
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K+ + S + + +DM+ +CG +D A+ + F MP
Sbjct: 214 FCLKYGYQSSVYVGSALVDMYARCGHMDAAQ----------------------LAFDGMP 251
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+ VSWN +IS R G G L ++ F + Y++ SA AS+ LE G
Sbjct: 252 TKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKW 311
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H+ ++ L F+G+ L+DMY A+ GS A F+
Sbjct: 312 VHAHMIKSGLKLIAFIGNTLLDMY----------------------AKAGSIDDAKRVFD 349
Query: 257 LMSRRNMISWMVLISAFSQAGVLEK--PRFF-----------FFFVSLLSGCSHSGPVTK 303
+ + +++SW +++ +Q G+ ++ RF F+ +L+ CSHSG + +
Sbjct: 350 RLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDE 409
Query: 304 GKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
G +YF M K+ ++V VDLLG GLL A++ I EMP +PT +WGALLGAC
Sbjct: 410 GLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACR 469
Query: 361 SHYNTKLAELVMRNLLQLD 379
H N +L +LD
Sbjct: 470 MHKNMELGVYAAERAFELD 488
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 131/271 (48%), Gaps = 39/271 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP++D VSW M++ ++ G ETL FIE+ G ++ +A S A +
Sbjct: 339 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G LH R++ + FVG+ L+ MY KC G+ +
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC----------------------GNMED 436
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A AFE M R+++SW +I+ +++ G ++ F V +L+ CSH
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 496
Query: 298 SGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
SG V KG YF +M F T ++ CM+DLLG +G L EA L+ +MP +P +WG
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALLGA H N +L + +L+ + G
Sbjct: 557 ALLGASRIHRNPELGRSAAEKIFELEPENAG 587
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 41/259 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP RD V++N MIS HG + L H F L+ A +++
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHG--------LVSLARHYFDLAPEKDAVSWNG------ 167
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +V +G ++ + E + AL++ Y + G +
Sbjct: 168 ----------------MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF--------FFFVSLLSGCSHSGPV 301
A F+ M R+++SW +++S +++ G ++E R F F + +++SG + +G +
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGML 271
Query: 302 TKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+ + F AM + + MV ++ EAK+L + MP + W +L
Sbjct: 272 EEARRVFDAMPERNAVSWN-AMVAAYIQRRMMDEAKELFNMMPCR-NVASWNTMLTGYAQ 329
Query: 362 HYNTKLAELVMRNLLQLDV 380
+ A+ V + Q D
Sbjct: 330 AGMLEEAKAVFDTMPQKDA 348
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 146/400 (36%), Gaps = 97/400 (24%)
Query: 16 IHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLH 75
+HA +S+ L D +F ++ R TYN MI+ H
Sbjct: 107 LHALAVSSSLA---------DARGLFDEMPVRDSVTYNVMISSHAN-------------H 144
Query: 76 GLV---KKFYFVSDESIAKSSIDM---HVKCGAVDYAESAFLRMLNPSLFCWKF---GII 126
GLV + ++ ++ E A S M +V+ G V+ A F + W G +
Sbjct: 145 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYV 204
Query: 127 RLLIM------FQKMPERDLVSWNTMISILTRHGFGFETLCTF-------IELWN---HG 170
+ M F +MP RD+VSWN M+S R G E F + W G
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSG 264
Query: 171 FGLSSMLYAT--AFSARASVYDLEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCN 226
+ + ML F A + W + + + M+ + ++F + C
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELF-------NMMPC--- 314
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
++ ++T YA+ G ++A F+ M +++ +SW +++A+SQ G E+ F
Sbjct: 315 ---RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 371
Query: 287 F-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-----------TCYFVC 322
F +LS C+ + G + + Y YF C
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC 431
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G + +A+ +EM + V W ++ H
Sbjct: 432 --------GNMEDARNAFEEMEER-DVVSWNTMIAGYARH 462
>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Glycine max]
Length = 650
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 137/276 (49%), Gaps = 39/276 (14%)
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+L +F++MP+R++VSWNT+I+ G FETL F + G G S + T A
Sbjct: 229 EVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCA 288
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
V L G +H +++ + DV + + L+DMY KCG +IG Y E
Sbjct: 289 QVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCG--------EIG------YCEK- 333
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
F+ M +++ SW +++ FS G + + F FV+LLS
Sbjct: 334 -------VFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLS 386
Query: 294 GCSHSGPVTKGKHYFT-AMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
GCSHSG ++GK F+ M F ++ C+VD+LG SG EA + + +P +P+
Sbjct: 387 GCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSG 446
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
IWG+LL +C + N LAE+V L +++ G+
Sbjct: 447 SIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGN 482
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 141/359 (39%), Gaps = 85/359 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLI------STCLISSIFLQL------IDDDYRVFCDIGPRY 48
+KAC L + + R IHAQ++ + ++++ L L D+ +VF ++ R
Sbjct: 182 LKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRN 241
Query: 49 LFTYNTMING------------GVR--------------------CLCVGNIKMALHLHG 76
+ ++NT+I G R C V + +HG
Sbjct: 242 VVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHG 301
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
+ K +D + S +DM+ KCG + Y E +F +M
Sbjct: 302 QILKSRKNADVPLLNSLMDMYAKCGEIGYCEK----------------------VFDRMH 339
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+DL SWNTM++ + +G E LC F E+ +G + + + S + G
Sbjct: 340 SKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKR 399
Query: 197 LHSRVVH---MEPSL-------DVFVGSGLIDMYLKCGCN-GIESSIQIGKALVTMYAEG 245
L S V+ ++PSL D+ SG D L N + S I +L+
Sbjct: 400 LFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLY 459
Query: 246 GSTQKADLAFELM---SRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL-----SGCS 296
G+ A++ E + N ++++L + ++ AG+ E + ++L +GCS
Sbjct: 460 GNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKDAGCS 518
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 119/304 (39%), Gaps = 60/304 (19%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131
LHLH L + + + ++ I ++ CG V+ A F I
Sbjct: 92 LHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQ------------------ID 133
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
+K PE + W M +R+GF E L + ++ + + ++ A A + + +
Sbjct: 134 DEKPPEEPV--WVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNA 191
Query: 192 EWGPHLHSRVV-HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H+++V H D V + L+ +Y++ GC + +++
Sbjct: 192 LVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGC--FDEVLKV---------------- 233
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG----------VLEKPRFFFFFVSL---LSGCSH 297
FE M +RN++SW LI+ F+ G V+++ F +++L L C+
Sbjct: 234 ----FEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQ 289
Query: 298 SGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ GK + K ++D+ G +G +K+ D M SK W
Sbjct: 290 VTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSK-DLTSWNT 348
Query: 355 LLGA 358
+L
Sbjct: 349 MLAG 352
>gi|356561520|ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Glycine max]
Length = 506
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 153/356 (42%), Gaps = 51/356 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T+IN +GN+ + LH K + S +D++ K ++ A+ A
Sbjct: 82 FTFGTLINSSA---ALGNVVVGKQLHACAMKIGLSCHVFVGSSLLDLYFKQSTIEDAQKA 138
Query: 110 FLRMLNP------SLFCWKFGIIRL---LIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F +P +L C R L +F +MPER++VSWN M+ ++ G E +
Sbjct: 139 FGDTQHPNVVSYTTLICGYLKRGRFEDALRVFHEMPERNVVSWNAMVGGCSQTGHNEEAV 198
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
FI + GF + + A A++ L G H+ + +D FVG+ LI Y
Sbjct: 199 NFFIGMLREGFIPNESTFPCVICAAANIASLGIGKSFHACAIKFLGKVDQFVGNSLISFY 258
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KC GS + + L F+ + +RN++SW +I ++Q G
Sbjct: 259 AKC----------------------GSMEDSLLMFDKLFKRNIVSWNAMICGYAQNGRGA 296
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFT----AMAKFTYTCYFVCM 323
+ FF + LL C+H+G V +G YF + ++ CM
Sbjct: 297 EAISFFERMCSEGYKPNYVTLLGLLWACNHAGLVDEGYSYFNRARLESPGLLKSEHYACM 356
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
V+LL SG EA+ + +P P W ALL C H N +L EL R +L LD
Sbjct: 357 VNLLARSGRFAEAEDFLQSVPFDPGLGFWKALLAGCQIHSNMRLGELAARKILDLD 412
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 60/172 (34%)
Query: 35 DDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALH--------------------- 73
+D RVF ++ R + ++N M+ G C G+ + A++
Sbjct: 164 EDALRVFHEMPERNVVSWNAMVGG---CSQTGHNEEAVNFFIGMLREGFIPNESTFPCVI 220
Query: 74 --------------LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
H KF D+ + S I + KCG+++ +
Sbjct: 221 CAAANIASLGIGKSFHACAIKFLGKVDQFVGNSLISFYAKCGSMEDS------------- 267
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
L+MF K+ +R++VSWN MI ++G G E + F + + G+
Sbjct: 268 ---------LLMFDKLFKRNIVSWNAMICGYAQNGRGAEAISFFERMCSEGY 310
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 167/395 (42%), Gaps = 75/395 (18%)
Query: 28 SIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE 87
S++L++++ + + C +TY + G R + +++ LH V K+ S+
Sbjct: 100 SLYLEMLERNVKPDC-------YTYPFLFKGFTRSVA---LQLGRELHCHVVKYGLDSNV 149
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK-----FGIIRLLIM----------- 131
+ I+M+ CG +D A F + W + I+ ++
Sbjct: 150 FAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVN 209
Query: 132 ----------FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
F KMPERD VSW MI R E L F E+ +
Sbjct: 210 TGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSV 269
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A A + LE G + + + + D FVG+ LIDMY KC
Sbjct: 270 LTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKC------------------ 311
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G+ + A F + +R+ +W ++ + G E+ F +
Sbjct: 312 ----GNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTY 367
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
V +LS C+H+G V +GK +F +M ++ CMVDLLG +G L EA ++I MP
Sbjct: 368 VGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMP 427
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
KP ++WGALLGAC H + ++AE + +L+L+
Sbjct: 428 MKPNSIVWGALLGACRIHKDAEMAERAIEQILELE 462
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 99/254 (38%), Gaps = 31/254 (12%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +PE + SWN M +R + ++E+ Y F
Sbjct: 70 LFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVA 129
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G LH VV +VF + LI+MY CG L+ M A G
Sbjct: 130 LQLGRELHCHVVKYGLDSNVFAHNALINMYSLCG-------------LIDM-ARG----- 170
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTA 310
F++ + ++++W +IS +++ + + ++++G ++G V + YF
Sbjct: 171 ---IFDMSCKSDVVTWNAMISGYNRI-----KKDVISWTAIVTGFVNTGQVDAARKYFHK 222
Query: 311 MAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS---KPTCVIWGALLGACCSHYNTKL 367
M + + + M+D EA L EM + KP ++L AC +L
Sbjct: 223 MPERDHVSW-TAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALEL 281
Query: 368 AELVMRNLLQLDVK 381
E + + + VK
Sbjct: 282 GEWIRTYIDKNKVK 295
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 183/414 (44%), Gaps = 64/414 (15%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--------LIDD--DYRVFCDIGPRYLF 50
+KACG + +H + + T L + +F + I D R D G R L
Sbjct: 17 LKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLV 76
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
++N+M+ G V C G + +A L +++ S ++ +M G VD A F
Sbjct: 77 SWNSMVAGYVGC---GEVDLAQDLFDEMRQRDAFSWATMIDGYGEM---AGGVDRARELF 130
Query: 111 LRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
+M + L CW I ++F++MPER+++SW+ +I R G E L
Sbjct: 131 DQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALE 190
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F + G + A +A A + LE G LHS + + DV V + LIDMY+
Sbjct: 191 FFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYV 250
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA--------- 272
KC G A L FE M ++++++W V+I
Sbjct: 251 KC----------------------GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLD 288
Query: 273 ----FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMV 324
F+Q P +++L+ C+H+G V++G F M K ++ ++
Sbjct: 289 AIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALI 348
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
DLLG +G + +A+ I+ MP +PT +WG+LL +C SH +LAEL + L L
Sbjct: 349 DLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASL 402
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 181/398 (45%), Gaps = 72/398 (18%)
Query: 29 IFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDES 88
+F+++++D C + P FT+ ++ C ++ +HGL KF SDE
Sbjct: 75 VFIEMVED-----CSVEPN-CFTFPSVFKA---CGRAERLREGRQVHGLAVKFGLDSDEF 125
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRML---------------NPSLFCWKF---GIIRL-- 128
+ + + M++ CG ++ A F R + + + W G +R+
Sbjct: 126 VVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGE 185
Query: 129 ----LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F +MP+R +VSWN MI+ + G E + F E+ + + + A
Sbjct: 186 LEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPA 245
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ + LE G +H V +D +GS LIDMY A+
Sbjct: 246 MSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMY----------------------AK 283
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
GS +KA FE + +RN+++W +I+ + G + F ++ L
Sbjct: 284 CGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGL 343
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFT----YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LS CSH+G V +G+ +F M + + ++ CMVDLLG +GLL E+++LI MP KP
Sbjct: 344 LSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKP 403
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
VIW ALLGAC H N ++ + V +L++L GS
Sbjct: 404 DDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGS 441
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 107/277 (38%), Gaps = 42/277 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F+ M + S+NT+I L+ + L FIE+ + + + F A
Sbjct: 44 IFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAE 103
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----------------GCNGI---- 228
L G +H V D FV S ++ MYL C GC+GI
Sbjct: 104 RLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKK 163
Query: 229 ---ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------- 277
+ + + ++ Y G + A F+ M +R+++SW V+I+ ++Q+G
Sbjct: 164 RRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEV 223
Query: 278 -----VLEKPRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGL 329
+ E P + VS+L S G + GK H + ++D+
Sbjct: 224 FREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAK 283
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
G + +A ++ + +P K V W ++ H K
Sbjct: 284 CGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMHGRAK 319
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCW-------- 121
A LHG K+ + + ++ IDM+ KC + +A F + + W
Sbjct: 113 ASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFM 172
Query: 122 KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ G I L I +F +MP RD +SW +I+ L +HG+ + L F ++ G +
Sbjct: 173 RNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIA 232
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+A A + L G +H V+ E ++ + + LIDMY +CGC IE + Q+
Sbjct: 233 VLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGC--IEFARQV------ 284
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
F M++R ++SW +I F+ G ++ FF
Sbjct: 285 --------------FVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVS 330
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMA---KFTYTC-YFVCMVDLLGLSGLLGEAKKLIDEM 343
+ L+ CSH+G V KG F M K T ++ C+VDL G +G L +A +I+EM
Sbjct: 331 YTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEM 390
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P KP V+ G+LL AC +H + LAE +M++L +LD
Sbjct: 391 PMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLD 426
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 22/123 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + L +H V F + I+ S IDM+ +CG +++A F+
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFV---------- 286
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
KM +R LVSWN++I +GF E+L F + GF + Y A
Sbjct: 287 ------------KMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGA 334
Query: 182 FSA 184
+A
Sbjct: 335 LTA 337
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 180/447 (40%), Gaps = 106/447 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+ C S ++ +++HA +I TC ++L+ + D RV ++ R +
Sbjct: 484 LTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNV 543
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++ MI+G + C ++ +H L
Sbjct: 544 VSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSL 603
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V K F S + S +DM+ K G + A +F +PE
Sbjct: 604 VIKTSFESHIFVGSSLLDMYAKAGKICEARR----------------------VFDGLPE 641
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VS +IS + G E L F L G + + YA+ +A + + L+ G +
Sbjct: 642 RDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQV 701
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
HS V+ + V + + LIDMY KCG S + F+
Sbjct: 702 HSHVLRAKLPFYVVLQNSLIDMYSKCG----------------------SLTYSRRIFDS 739
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTK 303
M R +ISW ++ +S+ G+ + F F+++LSGCSH G +
Sbjct: 740 MPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDR 799
Query: 304 GKHYFTAMAKFT-----YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F M ++ C+VDL G +G + EA + I +MP +PT IWG+LLGA
Sbjct: 800 GLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGA 859
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H N + E V R LL+++ + G+
Sbjct: 860 CRVHQNVHIGEFVARRLLEIESENAGN 886
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 45/224 (20%)
Query: 146 MISILTRHGFGFETLCT-------FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
++S + +TLC+ +E+ G + Y + + S + G +H
Sbjct: 441 LLSTFPANSPDLKTLCSNRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVH 500
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ ++ V++ + LI +Y KC C G A + M
Sbjct: 501 AHMIKTCYEPPVYLRTRLIVLYNKCRCLG----------------------DARRVLDEM 538
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGK 305
RN++SW +IS +SQ G + F F ++L+ C+ S G+
Sbjct: 539 PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGR 598
Query: 306 HYFTAMAKFTYTCY-FV--CMVDLLGLSGLLGEAKKLIDEMPSK 346
+ + K ++ + FV ++D+ +G + EA+++ D +P +
Sbjct: 599 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPER 642
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 43/304 (14%)
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWK---FGIIR-LLIMFQKMPERDLVSWNTMISILTR 152
+V+ G ++ A+ F ++ +L W G +R +F MP+RD +SW+ MI+ ++
Sbjct: 98 YVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQ 157
Query: 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
+G E L F+E+ L+ + A S +++ LE G LH R+V +V
Sbjct: 158 NGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYV 217
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
G+ L+ MY KC GS +A AF+ + ++++SW +I
Sbjct: 218 GNALLAMYCKC----------------------GSIDEARDAFQEILEKDVVSWNTMIHG 255
Query: 273 FSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FT 315
+++ G E+ F VS+L+ CSH+G V +G YF +M +
Sbjct: 256 YARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITA 315
Query: 316 YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ CMVDLLG +G L EA+ L+ MP +P WGALLGA H NT+L E + +
Sbjct: 316 KLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQII 375
Query: 376 LQLD 379
+++
Sbjct: 376 FEME 379
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 22/102 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ LH + K + + + + + M+ KCG++D A A
Sbjct: 190 CSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDA------------ 237
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
FQ++ E+D+VSWNTMI RHGFG E L F
Sbjct: 238 ----------FQEILEKDVVSWNTMIHGYARHGFGEEALTVF 269
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 172/369 (46%), Gaps = 48/369 (13%)
Query: 37 DYRVFCDIGP-RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSID 95
D R F D P + + ++NTMI+ + VG + A L + + VS ++ +
Sbjct: 122 DARGFFDSMPLKDVASWNTMISALAQ---VGLMGEARRLFSAMPEKNCVSWSAM----VS 174
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTM 146
+V CG +D A F S+ W KFG + L +FQ+M R LV+WN M
Sbjct: 175 GYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAM 234
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
I+ +G + L F + G +++ + +++ L+ G +H V
Sbjct: 235 IAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPL 294
Query: 207 SLDVFVGSGLIDMYLKCG--CNGIESSIQIGK-------ALVTMYAEGGSTQKADLAFEL 257
S D G+ L+ MY KCG + E IQI + A+++ YA+ G+ +KA F+
Sbjct: 295 SSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDE 354
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK---- 313
M + + KP + F V++L C+H+G V G YF M +
Sbjct: 355 MKKEGL-----------------KPDWITF-VAVLLACNHAGLVDLGVQYFNTMRRDFGI 396
Query: 314 FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
T ++ CMVDLLG +G L EA LI MP KP I+G LLGAC H N LAE +
Sbjct: 397 ETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAK 456
Query: 374 NLLQLDVKV 382
NLL+LD +
Sbjct: 457 NLLELDPTI 465
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 126/327 (38%), Gaps = 55/327 (16%)
Query: 83 FVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCWK------------FGIIRLL 129
F ++ IA + I +V+CG +D A F M S W F R L
Sbjct: 36 FNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQL 95
Query: 130 IMFQKMPERDLVSWNTMISILTRH-------GFGFETLCTFIELWNHGFGLSSMLYATAF 182
F+K+P+ + VS+N M++ H GF + WN T
Sbjct: 96 --FEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWN-----------TMI 142
Query: 183 SARASVYDLEWGPHLHSRV-----VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
SA A V + L S + V + +V G +D ++C S+ A
Sbjct: 143 SALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTA 202
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF----------- 285
++T Y + G + A+ F+ MS R +++W +I+ + + G E R F
Sbjct: 203 MITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPN 262
Query: 286 -FFFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLLGEAKKLID 341
S+L GCS+ + GK + K + T +V + G L +A +L
Sbjct: 263 ALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFI 322
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLA 368
++P K V W A++ H K A
Sbjct: 323 QIPRK-DVVCWNAMISGYAQHGAGKKA 348
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 181/398 (45%), Gaps = 72/398 (18%)
Query: 29 IFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDES 88
+F+++++D C + P FT+ ++ C ++ +HGL KF SDE
Sbjct: 98 VFIEMVED-----CSVEPN-CFTFPSVFKA---CGRAERLREGRQVHGLAVKFGLDSDEF 148
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRML---------------NPSLFCWKF---GIIRL-- 128
+ + + M++ CG ++ A F R + + + W G +R+
Sbjct: 149 VVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGE 208
Query: 129 ----LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F +MP+R +VSWN MI+ + G E + F E+ + + + A
Sbjct: 209 LEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPA 268
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ + LE G +H V +D +GS LIDMY A+
Sbjct: 269 MSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMY----------------------AK 306
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
GS +KA FE + +RN+++W +I+ + G + F ++ L
Sbjct: 307 CGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGL 366
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFT----YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LS CSH+G V +G+ +F M + + ++ CMVDLLG +GLL E+++LI MP KP
Sbjct: 367 LSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKP 426
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
VIW ALLGAC H N ++ + V +L++L GS
Sbjct: 427 DDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGS 464
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 107/277 (38%), Gaps = 42/277 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F+ M + S+NT+I L+ + L FIE+ + + + F A
Sbjct: 67 IFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAE 126
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----------------GCNGI---- 228
L G +H V D FV S ++ MYL C GC+GI
Sbjct: 127 RLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKK 186
Query: 229 ---ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------- 277
+ + + ++ Y G + A F+ M +R+++SW V+I+ ++Q+G
Sbjct: 187 RRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEV 246
Query: 278 -----VLEKPRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGL 329
+ E P + VS+L S G + GK H + ++D+
Sbjct: 247 FREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAK 306
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
G + +A ++ + +P K V W ++ H K
Sbjct: 307 CGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMHGRAK 342
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 172/405 (42%), Gaps = 95/405 (23%)
Query: 31 LQLIDDDYRVFCDIGPRYLFTYNTMING---------------GVRCLCV---------- 65
L ++++ +VF + R L T+N++I+G G+R V
Sbjct: 218 LGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSL 277
Query: 66 -------GNIKMALHLH-GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
G+I +H +V++ + V D + +DM+ K ++ A+
Sbjct: 278 ASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQR--------- 328
Query: 118 LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSM 176
MF MP RD VSWNT+I+ ++G E + + + H G
Sbjct: 329 -------------MFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQG 375
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ + A + + L+ G +H+ + +LDV+VG+ +ID+Y KC
Sbjct: 376 TFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKC------------- 422
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
G +A L FE RR+ W +IS G K F
Sbjct: 423 ---------GKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISP 473
Query: 287 ---FFVSLLSGCSHSGPVTKGKHYF----TAMAKFTYTCYFVCMVDLLGLSGLLGEAKKL 339
FVSLL+ CSH+G V +G+++F TA ++ CMVD+ G +G L +A
Sbjct: 474 DHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDF 533
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
I MP KP IWGALLGAC H N ++ ++ +NL +LD K G
Sbjct: 534 IRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVG 578
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 136/359 (37%), Gaps = 55/359 (15%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+ D YR F ++ R + +N M++G R A+ L G + D S
Sbjct: 120 VRDAYRAFDEMRHRDVPAWNAMLSGLCRN---ARAAEAVGLFGRMVMEGVAGDAVTVSSV 176
Query: 94 IDMHVKCGAVDYAES----AFLRMLNPSLFC--------WKFGII-RLLIMFQKMPERDL 140
+ M V G A + A L+ LF K G++ + +F M RDL
Sbjct: 177 LPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDL 236
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
V+WN++IS + G + F + + G + + SA A D+ G +H
Sbjct: 237 VTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCY 296
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
+V DV I G A+V MYA+ + A F+ M
Sbjct: 297 MVRR--GWDV-------------------GDIIAGNAIVDMYAKLSKIEAAQRMFDSMPV 335
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGK- 305
R+ +SW LI+ + Q G+ + + FVS+L SH G + +G
Sbjct: 336 RDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTR 395
Query: 306 -HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
H + Y C++DL G L EA L ++ P + T W A++ H
Sbjct: 396 MHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGP-WNAVISGVGVH 453
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 122 KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+FG +R F +M RD+ +WN M+S L R+ E + F + G ++ ++
Sbjct: 116 RFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSS 175
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+ D +H V ++FV + +ID+Y K G
Sbjct: 176 VLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGM--------------- 220
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
++ F+ MS R++++W +IS Q G + F
Sbjct: 221 -------LEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLT 273
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV----CMVDLLGLSGLLGEAKKLIDEM 343
+SL S + G + G+ M + + + +VD+ + A+++ D M
Sbjct: 274 LLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSM 333
Query: 344 PSKPTCVIWGALL 356
P + V W L+
Sbjct: 334 PVR-DAVSWNTLI 345
>gi|357152605|ref|XP_003576175.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Brachypodium distachyon]
Length = 500
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 145/327 (44%), Gaps = 66/327 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LHG +F F+ + ++ + +DM+ K G +D A +F
Sbjct: 125 LHGFAVQFGFLGNVVVSSALLDMYAKSGLLDNAAR----------------------VFD 162
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTF----IELWNHGFGLSSMLYATAFSARASVY 189
+MPE+D V WN M++ R G ETL F +E+ N L S+ + +A
Sbjct: 163 EMPEKDSVVWNCMVTAYARAGMAAETLEIFRRAQVEVVNMARDLRSV--PSVLNACGKEG 220
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+L G +H R+V C +S + IG AL+ MYA+ G
Sbjct: 221 ELMKGREIHGRMVR---------------------CLAFDSDVPIGNALIDMYAKCGHVD 259
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCS 296
+ F M RN++SW LIS + G E R + F+S+LS CS
Sbjct: 260 ASRAVFAGMLERNVVSWSTLISCYGVHGKGKEALRIYKEMLSQRVKPNGITFMSVLSSCS 319
Query: 297 HSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
HSG VT G+ F +M+K ++ MVD+LG +G + EA LI +MP P W
Sbjct: 320 HSGLVTDGRMIFESMSKVHGVEPTAEHYASMVDILGRAGAIEEAVGLIRKMPMGPCASAW 379
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
GA+L AC +H N + E+ L +L+
Sbjct: 380 GAVLSACATHNNVDVGEIAAYRLFELE 406
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 173/377 (45%), Gaps = 56/377 (14%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D ++F D+ R + +N MI + + +G++K A L ++ + VS S+
Sbjct: 116 LDYARKIFDDMCVRPVELWNQMIG---KYVNIGDVKSARELFDIMPERDIVSWNSM---- 168
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI---------IRLLIMFQKMPERDLVSWN 144
I + K G V A F +M ++ W I F+ MP+R++VSWN
Sbjct: 169 ILGYAKGGKVANARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWN 228
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
+MIS +HG E+L F+++ + G + + SA +++ DLE+G ++H +
Sbjct: 229 SMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDL 288
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
S +V VG+ L +MY +C G KA F + +R++
Sbjct: 289 SQS-EVMVGTALTEMYAQC----------------------GDVDKAFAVFIKIGKRDVF 325
Query: 265 SWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAM 311
W V+I A + G E+ + F F F S L CSH G V +G F +M
Sbjct: 326 CWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSM 385
Query: 312 AK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
K ++ C++D+L +G L EA L+++MP +P IWGALLG C + KL
Sbjct: 386 EKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGALLGGCRVTGDLKL 445
Query: 368 AELVMRNLLQLDVKVFG 384
AE V+ +++ G
Sbjct: 446 AEKVVEKATEMETNESG 462
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 148/313 (47%), Gaps = 63/313 (20%)
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTM 146
E + + +DM+ K G DYA +F+KM ++D++SW ++
Sbjct: 2 ELVNNALVDMYAKXGYFDYA----------------------FDVFEKMTDKDVISWTSL 39
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
++ +G E L F E+ G ++ A SA A + LE+G +H+
Sbjct: 40 VTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHAN------ 93
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
+LK +G+ SS+ + +LV+MYA+ G + A+ F+ M +++I+W
Sbjct: 94 -------------FLK---SGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITW 137
Query: 267 MVLISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMA 312
LI ++Q G KP F F + LL CSH+G V G+ YF +M
Sbjct: 138 TALIVGYAQNGRGRESLNFYNBMIASGVKPDFITF-IGLLFACSHAGLVEHGRSYFQSME 196
Query: 313 KF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ ++ CM+DLLG SG L EAK+L+++M +P +W ALL AC H N +L
Sbjct: 197 EVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELG 256
Query: 369 ELVMRNLLQLDVK 381
E NL +L+ K
Sbjct: 257 ERAANNLFELEPK 269
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 152/345 (44%), Gaps = 74/345 (21%)
Query: 62 CLCVGNIKMALHLHG-LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL-- 118
C + +K L +H +VK F D + + +DM+ KC V+ A F RM ++
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVS 317
Query: 119 -------FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+ + MF KM +R++VSWN +I+ T++G E L F L
Sbjct: 318 ETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRES- 376
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
++ T ++ +G L S D+FVG+ LIDM
Sbjct: 377 -----IWPTHYT---------FGNLLKS---------DIFVGNSLIDM------------ 401
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL------------ 279
Y + GS + FE M R+ +SW +I ++Q G
Sbjct: 402 ----------YMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLV 451
Query: 280 --EKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLLG 334
EKP + +L CSH+G V +G+HYF +M + ++ CMVDLLG +G L
Sbjct: 452 CGEKPDHVTM-IGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLN 510
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EAK LI+ MP P V+WG+LL AC H N ++ + LL++D
Sbjct: 511 EAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEID 555
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 142/324 (43%), Gaps = 47/324 (14%)
Query: 47 RYLFTYNTMINGGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD 104
R F N G C G ++ M +H LV K + +D + + IDM+ KCG+V
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199
Query: 105 YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
AE F M+ ER+LV+WN++I+ ++G E L F+
Sbjct: 200 CAEEVFSGMI----------------------ERNLVTWNSLITCYEQNGPASEALEVFV 237
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKC 223
+ + G + A+ SA AS+ L+ G +H+RVV D+ +G+ L+DMY KC
Sbjct: 238 RMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKC 297
Query: 224 G----CNGIESSIQIGK-----ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
+ + I ++V+ YA S + A F M++RN++SW LI+ ++
Sbjct: 298 SKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYT 357
Query: 275 QAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV--CMVDLLGLSGL 332
Q G E+ F + S HY + FV ++D+ G
Sbjct: 358 QNGENEEALRLFRLLKRES--------IWPTHY--TFGNLLKSDIFVGNSLIDMYMKCGS 407
Query: 333 LGEAKKLIDEMPSKPTCVIWGALL 356
+ + ++ ++M + CV W A++
Sbjct: 408 IEDGSRVFEKMKER-DCVSWNAII 430
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 60/330 (18%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI----------MFQKMPER 138
I ID++ KC +D A F RM + F W +I +L +F MPE
Sbjct: 52 IQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWN-SLISVLTKSGFLDEAARLFGSMPEP 110
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
D SWN+M+S +H E+L F+++ F L+ + +A SA A + DL G +H
Sbjct: 111 DQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVH 170
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ V S DV++GS LIDMY KC GS A+ F M
Sbjct: 171 ALVSKSRYSTDVYMGSALIDMYSKC----------------------GSVACAEEVFSGM 208
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGK 305
RN+++W LI+ + Q G + F S++S C+ + +G
Sbjct: 209 IERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEG- 267
Query: 306 HYFTAMAKFTYTCYFV-------CMVDLLGLSGLLGEAKKLIDEMPSK----PTCVIWGA 354
A+ T F +VD+ + EA+++ D M + T ++ G
Sbjct: 268 --LQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGY 325
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
A +++ RN++ + + G
Sbjct: 326 ARAASVKAARFMFSKMTQRNVVSWNALIAG 355
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 28/198 (14%)
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEGGS 247
+H+R++ + S+++F+ + LID+Y KC C + + +L+++ + G
Sbjct: 37 VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
+A F M + SW ++S F+Q E+ +F F S LS
Sbjct: 97 LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156
Query: 295 CSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C+ + G H + ++++ Y ++D+ G + A+++ M + V
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIER-NLVT 215
Query: 352 WGALLGACCSHYNTKLAE 369
W +L+ C N +E
Sbjct: 216 WNSLI--TCYEQNGPASE 231
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 139/313 (44%), Gaps = 50/313 (15%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLLIM-FQKMPERDLVSWN 144
IDM CG +D A+S F M N + W G I L F ++PERD VSW
Sbjct: 250 IDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWT 309
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
MI R E L F E+ + +A A + LE G + + +
Sbjct: 310 AMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKN 369
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
D FVG+ LID MY + G+ KA F+ M ++
Sbjct: 370 SIKNDTFVGNALID----------------------MYFKCGNVGKAKKVFKEMHHKDKF 407
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
+W +I + G E+ F ++ +L C+H+G V KG+ +F +M
Sbjct: 408 TWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISM 467
Query: 312 A-----KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
K T ++ CMVDLLG +G L EA ++I MP KP ++WG+LLGAC H N +
Sbjct: 468 TMQHGIKPNVT-HYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQ 526
Query: 367 LAELVMRNLLQLD 379
LAE+ + +L+L+
Sbjct: 527 LAEMAAKQILELE 539
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 147/376 (39%), Gaps = 82/376 (21%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGN-IKM-ALHLHGLVKKFYFVSDESIAKSSIDM 96
+VF I LF +NTMI G R N + M L L +K F + + +M
Sbjct: 62 QVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNM 121
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWK-----FGIIRLLIMFQKMPER----DLVSWNTMI 147
++ G V A + +LF K F + RL+ + +K+ + ++V+WN M+
Sbjct: 122 ALQYGKV-LLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIML 180
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
S R ++ FIE+ G +S+ SA + + DLE G H++
Sbjct: 181 SGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK-------- 232
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
++ G++ E ++ + L+ M+A G +A F+ M R++ISW
Sbjct: 233 ---YINGGIV-----------ERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWT 278
Query: 268 VLISAFSQAGVLEKPRFF------------------------------------------ 285
+++ F+ G ++ R +
Sbjct: 279 SIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKP 338
Query: 286 --FFFVSLLSGCSHSGPVTKG---KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLI 340
F VS+L+ C+H G + G K Y + T ++D+ G +G+AKK+
Sbjct: 339 DEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVF 398
Query: 341 DEMPSKPTCVIWGALL 356
EM K W A++
Sbjct: 399 KEMHHKDK-FTWTAMI 413
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 175/406 (43%), Gaps = 81/406 (19%)
Query: 2 KACGSLKSLPIARKI-----HAQLISTCLISSIFLQLI------DDDYRVFCDIGPRYLF 50
KAC L + + +I H S +S+ + L+ D ++F R L
Sbjct: 159 KACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLV 218
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
++N+MING C GN++ A L + VS ++ V YA+S
Sbjct: 219 SWNSMING----YC-GNLESARKLFDSMTNKTMVSWTTMV------------VGYAQSGL 261
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
L M WK +F +MP++D+V WN MI G E L F E+
Sbjct: 262 LDM------AWK--------LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN 307
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ + SA + + L+ G +H + E SL+V +G+ LIDM
Sbjct: 308 INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDM----------- 356
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---- 286
YA+ G KA F+ + RN ++W +IS + G +F
Sbjct: 357 -----------YAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMI 405
Query: 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLL 333
F+ LLS C H G V +G+ YF+ M+ KF + ++ CMVDLLG +GLL
Sbjct: 406 DNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLL 465
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA++LI MP + V+WGAL AC H N + E LLQ+D
Sbjct: 466 EEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMD 511
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 61/341 (17%), Positives = 116/341 (34%), Gaps = 81/341 (23%)
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+DY + NP+ F W I L + P +V + ++
Sbjct: 100 LDYCTNILFNTRNPNTFSWNVAIRGFLD--SENPREAVVLYKRVLQC------------- 144
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
G + Y F A A + + G + V+H+ D+FV + +I + +
Sbjct: 145 ------DGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVS 198
Query: 223 CG---------------------------CNGIESSIQI-----GKALVTM------YAE 244
CG C +ES+ ++ K +V+ YA+
Sbjct: 199 CGDLDGARKMFDKSCVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQ 258
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
G A F+ M ++++ W +I + A ++ F VS
Sbjct: 259 SGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSC 318
Query: 292 LSGCSHSGPVTKG---KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
LS CS G + G HY ++D+ G + +A ++ E+P +
Sbjct: 319 LSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-N 377
Query: 349 CVIWGALLGACCSHYNTK-----LAELVMRNLLQLDVKVFG 384
+ W A++ H N +E++ +++ +V G
Sbjct: 378 SLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLG 418
>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
Length = 631
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 157/360 (43%), Gaps = 69/360 (19%)
Query: 45 GPRYLFTYNTMING--GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
G L T+ +N RCL +G LHGLV + F D S+A ID++ KC
Sbjct: 155 GEPDLITFCAFLNACADARCLDLGR-----QLHGLVIRSGFEGDVSVANGIIDVYGKCKE 209
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
V+ AE ++F M R+ VSW TM++ ++ +
Sbjct: 210 VELAE----------------------MVFNGMGRRNSVSWCTMVAACEQNDEKEKACVV 247
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F+ G L+ + ++ SA A + LE+G +H+ V D+FVGS L+D
Sbjct: 248 FLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVD---- 303
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
MY + GS + + F M RN++SW +IS ++ G ++
Sbjct: 304 ------------------MYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMA 345
Query: 283 RFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVD 325
F + +LS CS G V G F +M + Y ++ C+ D
Sbjct: 346 MTLFEEMQSEAVANYVTLICVLSACSRGGAVKLGNEIFESM-RDRYRIEPGAEHYACIAD 404
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+LG +G++ A + + +MP +PT +WGALL AC + +L ++ NL +LD K G+
Sbjct: 405 MLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGN 464
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 118/312 (37%), Gaps = 61/312 (19%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H + K ++D+ + S+ DM+ K G KF RL F
Sbjct: 79 QIHAIALKLGQINDKFVGCSAFDMYSKTG-------------------LKFEAQRL---F 116
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+MP R++ WN IS G + + FIE G + + +A A L+
Sbjct: 117 DEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLD 176
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G LH V+ DV V +G+ID+Y KC + A+
Sbjct: 177 LGRQLHGLVIRSGFEGDVSVANGIIDVYGKC----------------------KEVELAE 214
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF-------------VSLLSGCSHSG 299
+ F M RRN +SW +++A Q EK F S++S +
Sbjct: 215 MVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGIS 274
Query: 300 PVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ G+ + A+ FV +VD+ G G + + +++ EMP + V W A++
Sbjct: 275 GLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPER-NLVSWNAMI 333
Query: 357 GACCSHYNTKLA 368
+ +A
Sbjct: 334 SGYAHQGDVDMA 345
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++ Q P R +V+W +IS ++G+ L F ++ + + AF A ++
Sbjct: 13 LLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTALC 72
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
G +H+ + + D FVG DMY K G
Sbjct: 73 LPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTG 107
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 155/353 (43%), Gaps = 51/353 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +GN+++ +H + + + + + I + K G+V+ A + + L
Sbjct: 307 CANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVI 366
Query: 122 KF-----GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
F G +++ MF M RD+V+W MI ++G E + F + G
Sbjct: 367 SFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCG 426
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+S A S AS+ L++G +H R + SL +E
Sbjct: 427 PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIR---SL-------------------LEQ 464
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAGVLEKPRFFF--- 286
S + A++TMYA GS A F+ + R+ I+W +I A +Q G E+ F
Sbjct: 465 SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 524
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
+V +LS CSH+G V +GK Y+ + ++ CMVDLL +GL
Sbjct: 525 LRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGL 584
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
EA++ I MP +P + WG+LL AC H N +LAEL LL +D G+
Sbjct: 585 FSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGA 637
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 27/253 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPERD VSW M+ L R G E + T +++ GF + S+ A
Sbjct: 120 VFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQA 179
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES---------SIQIGKALVTM 241
G +HS VV + V V + +++MY KCG + + S+ A+V++
Sbjct: 180 GAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSL 239
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF-------------FF 287
G A+ FE M R+++SW +I+ ++Q G+ K + F F
Sbjct: 240 NTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 299
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDE-M 343
S+LS C++ G V GK H + + Y ++ SG + A++++D+ M
Sbjct: 300 ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSM 359
Query: 344 PSKPTCVIWGALL 356
+ + + ALL
Sbjct: 360 ETDLNVISFTALL 372
>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Brachypodium distachyon]
Length = 631
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 119/439 (27%), Positives = 191/439 (43%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARK-----IHAQLISTCLISSIFLQLI-----DDDYRVFCDI-GPRYL 49
++ C KSL + + IH L++ L +I + L +D R+ DI R +
Sbjct: 64 LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123
Query: 50 FTYNTMINGGVR------------------------------CLCVGN--IKMALHLHGL 77
++NTMI G C C I LH +
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTI 183
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K S+ + + +D++ KC + A CW +F+KMPE
Sbjct: 184 ALKLALDSNSFVGTAILDVYAKCNMIKDA-------------CW---------VFEKMPE 221
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R LV+W+++ + ++G E L F G L+ + SA AS+ G L
Sbjct: 222 RTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQL 281
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ + LKCG +G + + +LV +YA G +KA F
Sbjct: 282 HAVI-------------------LKCGFHG---NFFVAASLVDVYARCGQIEKAYALFAY 319
Query: 258 MSRRNMISWMVLISAFSQAG-------VLEKPRFFFFF------VSLLSGCSHSGPVTKG 304
M +N++ W +I++FS+ + EK + F +S+LS CSH+G V KG
Sbjct: 320 MEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKG 379
Query: 305 KHYFTA-MAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+HYF+ M+ T ++ CMVD+LG SG EA +L+++MP +PT +WG+LLG+C
Sbjct: 380 RHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCR 439
Query: 361 SHYNTKLAELVMRNLLQLD 379
++ N +LA + L QL+
Sbjct: 440 NYNNIRLARIAAEQLFQLE 458
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 125/322 (38%), Gaps = 61/322 (18%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
HGL F V+D I+++ KCG D A ++F
Sbjct: 80 HGLAIHFGLVTDTLTCNILINLYTKCGRNDCAR----------------------LVFDI 117
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
M R +VSWNTMI+ T G + L F + G +S ++ A A+ Y +
Sbjct: 118 MHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINEC 177
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
LH+ + + + FVG+ ++D+Y K CN I+ + +
Sbjct: 178 KQLHTIALKLALDSNSFVGTAILDVYAK--CNMIKDACWV-------------------- 215
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLSGCSHSGPV 301
FE M R +++W L + + Q G+ E+ F ++LS C+
Sbjct: 216 FEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALK 275
Query: 302 TKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+G + K + F +VD+ G + +A L M K VIW A++ +
Sbjct: 276 IEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHK-NVVIWNAMIAS 334
Query: 359 CCSHYNTKLAELVMRNLLQLDV 380
H ++ A ++ + QL +
Sbjct: 335 FSRHAHSWEAMILFEKMQQLGI 356
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 180/404 (44%), Gaps = 75/404 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+K+CGS + R+IH ++ T L +F+Q NT+I+
Sbjct: 115 LKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQ--------------------NTLIHLYA 154
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C C I+ A HL + + VS ++ + + + G ++ A F M ++
Sbjct: 155 SCGC---IEDARHLLDRMLERDVVSWNAL----LSAYAERGLMELACHLFDEMTERNVES 207
Query: 121 WKFGI-----IRLL----IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W F I + LL +F + P +++VSWN MI+ + G E L F ++ + G
Sbjct: 208 WNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGV 267
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ + SA A V L G +H+ + S+D FV + L+DMY KC
Sbjct: 268 KPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKC-------- 319
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
GS +KA F R+++ +W +IS S G + F
Sbjct: 320 --------------GSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLV 365
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLG 334
FV +LS CS +G + +G+ F M ++ CMVDLLG GLL
Sbjct: 366 EGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLE 425
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
EA++L+ +MP K V+W +LLGAC +H N +LAE V + LL+L
Sbjct: 426 EAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLEL 469
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
F + IA S + H + A+ YA S F R+ NP+ + W IIR PE L
Sbjct: 40 FAASRLIASVSTNSHAQ--AIPYAHSIFSRIPNPNSYMWNT-IIRAYAN-SPTPEAALTI 95
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
++ M+ H TF F L S S +E G +H V+
Sbjct: 96 FHQML-----HASVLPDKYTFT------FALKSC---------GSFSGVEEGRQIHGHVL 135
Query: 203 HMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEGGSTQKADL 253
D+F+ + LI +Y CGC +E + AL++ YAE G + A
Sbjct: 136 KTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACH 195
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSG 299
F+ M+ RN+ SW +IS + G+LE+ R F + ++++G SH+G
Sbjct: 196 LFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAG 250
>gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Cucumis sativus]
Length = 489
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 202/442 (45%), Gaps = 113/442 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL------ISSIFLQL------IDDDYRVFCDIGPRY 48
++ C L+++ +IH +LI T L ISS L+L ++D ++VF ++G R
Sbjct: 61 LELCYQLQAIHHGIRIH-RLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRN 119
Query: 49 L--FTYNTMING--------------------GVR------------CLCVGNIKMALHL 74
F +N++I+G GV C +G+I++ +
Sbjct: 120 FSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAV 179
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H V + F D + + +DM+ KCG I+R +F +
Sbjct: 180 HRHVVRSGFAGDVFVLNALVDMYSKCGC----------------------IVRARKVFDQ 217
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+ +D+VSWN+M++ TRHG FE L F ++ G+ S+ +T S ++ +++
Sbjct: 218 IEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLS---NISSMKFK 274
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
H+H V+ +G+E ++ I +L+ MYA+ G +A
Sbjct: 275 LHIHGWVIR----------------------HGVEWNLSIANSLIVMYAKCGKLNRAKWL 312
Query: 255 FELMSRRNMISWMVLISA-FSQAGVLEKPRFF---------FFFVSLLSGCSHSGPVTK- 303
F+ M +++M+SW +ISA F+ A L FVSLLS C+H G V +
Sbjct: 313 FQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEG 372
Query: 304 GKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLID---EMPSKPTCVIWGALLG 357
GK YF K+ ++ CMV+L G +G++ EA K+I E+ + PT IWGALL
Sbjct: 373 GKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPT--IWGALLY 430
Query: 358 ACCSHYNTKLAELVMRNLLQLD 379
AC H + +AE+ L +L+
Sbjct: 431 ACYLHSDVDIAEIAAERLFELE 452
>gi|125533803|gb|EAY80351.1| hypothetical protein OsI_35522 [Oryza sativa Indica Group]
Length = 470
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 145/328 (44%), Gaps = 68/328 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG + + + +A + +DM+ K G +D A + +F
Sbjct: 125 IHGFAVRLGLMGNVVVAAALLDMYAKAGFLDDA----------------------VRVFD 162
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTF----IELWNHGFGLSSMLYATAFSARASVY 189
+M ERD V WN M++ R G ET F +E N GL ++ A+
Sbjct: 163 EMTERDAVVWNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNGLQAVPSVLNICAKEG-- 220
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+L G +H R+V C +S I +G AL+ MYA+ G
Sbjct: 221 ELMKGREIHGRMVR---------------------CLAFDSDIAVGNALINMYAKCGRVN 259
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGC 295
+ F M +R+++SW +I ++S G E KP + F S+LS C
Sbjct: 260 VSQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITF-TSVLSSC 318
Query: 296 SHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SHSG VT+G+ F +M K ++ CMVDLLG +G + EA LI +MP +P +
Sbjct: 319 SHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASV 378
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLD 379
WGALL AC H N + E+ L +L+
Sbjct: 379 WGALLSACAMHNNVDVGEIAAFRLFELE 406
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 68/230 (29%)
Query: 1 MKACGSLKSLPIARKIHA-----QLISTCLISSIFLQL------IDDDYRVFCDIGPRYL 49
++AC L + IH L+ ++++ L + +DD RVF ++ R
Sbjct: 110 VRACSELPDAVLGGVIHGFAVRLGLMGNVVVAAALLDMYAKAGFLDDAVRVFDEMTERDA 169
Query: 50 FTYNTMINGGVR----------------------------------CLCVGNIKMALHLH 75
+N M+ G R C G + +H
Sbjct: 170 VVWNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNGLQAVPSVLNICAKEGELMKGREIH 229
Query: 76 G-LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
G +V+ F SD ++ + I+M+ KCG V+ +++ +F
Sbjct: 230 GRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQA----------------------VFSG 267
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
M +RD+VSW+TMI + HG G + L ++E+ + G + + + + S+
Sbjct: 268 MQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITFTSVLSS 317
>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
Length = 706
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 147/340 (43%), Gaps = 61/340 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + IK+ LHG + K + + ++M+ KCG +D A
Sbjct: 323 CAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAH-------------- 368
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++F ++ +D + WN++I+ ++ G E + F ++ G + + A
Sbjct: 369 --------LIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAA 420
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ L +G +H ++ D+F S LI+MY KCG I
Sbjct: 421 LSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNI------------- 467
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
A L F LM +N ++W +I+A+ G L F F
Sbjct: 468 ---------ARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITF 518
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+++LS C H+G V G YF M + ++ CM DL G +G L EA ++I MP
Sbjct: 519 LTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMP 578
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
P +WG LLGAC H N +LAE+ R LL L+ K G
Sbjct: 579 FPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSG 618
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP+ DLV WN MI ++GF + F E+ + G S+ + + + A
Sbjct: 168 LFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSS 227
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----GCNGIESS----IQIGKALVTM 241
L+ +H +V LDV++ S LID+Y KC C S I I A+++
Sbjct: 228 LKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISG 287
Query: 242 YAEGGSTQKADLAFELMSRRNMI 264
Y G + A F + ++ MI
Sbjct: 288 YVLNGMNKDALEIFRWLLQKKMI 310
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 44/225 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + N+++ + ++ + F D +A S I ++ G ++ A
Sbjct: 20 CTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARR------------- 66
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
F KM ++D V WN MI+ + G + F ++ + S+ +A
Sbjct: 67 ---------FFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACV 117
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
S S +E+G LH VV +G++ +G LVT+
Sbjct: 118 LSISCSEAMVEYGRQLHGLVVR----------------------SGLDFVPLVGNTLVTV 155
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
Y++G A F++M + +++ W +I + Q G ++ F
Sbjct: 156 YSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLF 200
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/357 (19%), Positives = 135/357 (37%), Gaps = 71/357 (19%)
Query: 52 YNTMINGGVRCLCV------------GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+N MI+ G++ + ++K +HG + + + D + + ID++ K
Sbjct: 200 FNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFK 259
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
C A +M N S KF D+V + MIS +G +
Sbjct: 260 CRDAVMA----CKMFNLST---KF---------------DIVIYTAMISGYVLNGMNKDA 297
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
L F L +++ +++ A A + ++ G LH ++ E VGS +++M
Sbjct: 298 LEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNM 357
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KC G A L F +S ++ I W +I++FSQ G
Sbjct: 358 YAKC----------------------GRLDLAHLIFGRISIKDAICWNSIITSFSQDGKP 395
Query: 280 EKPRFFFFFVSL-------------LSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDL 326
E+ + F + + LS C++ + GK M K + M L
Sbjct: 396 EEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSAL 455
Query: 327 LGLSGLLGEAK--KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ + G+ +L+ + + V W +++ A H + + N+L+ ++
Sbjct: 456 INMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQ 512
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 34/196 (17%)
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
+V +G + DM L+ G + + + +L+ +YA+ G + A F+ M ++ + W V
Sbjct: 25 NVRLGKVIQDMILEMG---FDLDMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNV 81
Query: 269 LISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHS---------GPVTKGK 305
+I+ + Q G + KP F L CS + G V +
Sbjct: 82 MINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSG 141
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
F + T +V + LG+A+KL D MP + V+W ++G +
Sbjct: 142 LDFVPLVGNT-------LVTVYSKGRQLGDARKLFDMMP-QIDLVVWNRMIGGYVQNGFM 193
Query: 366 KLAELVMRNLLQLDVK 381
A ++ ++ +K
Sbjct: 194 DDASMLFNEMISAGIK 209
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 132/271 (48%), Gaps = 39/271 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M E+D +W+ +I I R GF E L F + G + + S S+
Sbjct: 286 VFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLAS 345
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G +HS++V LD++V S LI MY+KCG LVT
Sbjct: 346 LDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCG------------DLVT---------- 383
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
F+ S ++++ W +I+ ++Q G EK F F+ +LS C +
Sbjct: 384 GKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGY 443
Query: 298 SGPVTKGKHYFTAM-AKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G V +G F +M +K+ T ++ CMVDLLG +G L EA LI+ MP + ++WG
Sbjct: 444 TGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWG 503
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALL AC +H N LAE+ + LLQL+ G
Sbjct: 504 ALLSACRTHKNLDLAEIAAKKLLQLEPSSAG 534
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%)
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII---------RLLI 130
+ YF S +I + I + G +D A + F + + ++ W +
Sbjct: 9 RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVY 189
+F KMPER+ +SWN ++S ++G E F ++ +SM+
Sbjct: 69 LFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEA 128
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+L + VV L + G +D + + ++ G
Sbjct: 129 ELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLS 188
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGP 300
+A F+ M +RN+++W +IS ++ ++ R F + ++L G + SG
Sbjct: 189 EAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGR 248
Query: 301 VTKGKHYFTAMA-KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ + F AM K C + M GL+G +G+A+ + D+M K W AL+
Sbjct: 249 INEAAELFKAMPVKPVAACNGMIMG--FGLNGEVGKARWVFDQMKEKDDGT-WSALI 302
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 11/158 (6%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------F 287
A+V Y +A F+ M RN ISW L+S + + G++ + R F
Sbjct: 52 AIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVS 111
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+ S++ G G + + + F M + + V + L+ G + EA++L D +P K
Sbjct: 112 WTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIE-DGRVDEARRLFDMIPVK- 169
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
V ++G CS A + + Q +V + S
Sbjct: 170 DVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTS 207
>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 161/352 (45%), Gaps = 47/352 (13%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
MI+ V C V ++ M G + K + + ++M+VKCG V+ F M
Sbjct: 124 AMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEM 183
Query: 114 LNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
++ W G+ ++F +MPER+ V W MI+ +GF E
Sbjct: 184 NERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLD 243
Query: 165 EL-WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
E+ GL+ + ++ SA A D+ G +H V+ G+
Sbjct: 244 EMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVH-----------VYALKGM------- 285
Query: 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------ 277
G E I +G ALV MYA+ G A F+ + +RN+++W ++ + G
Sbjct: 286 ---GREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVL 342
Query: 278 ------VLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLL 327
+ E F+++LS CSHSG V +G HYF ++ T ++ CMVD+L
Sbjct: 343 DIFPKMIEEAKPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDIL 402
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
G +G L EA LI +MP P V+ G+LLG+C +H +L E +++ L+Q+D
Sbjct: 403 GRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMD 454
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 109/266 (40%), Gaps = 31/266 (11%)
Query: 131 MFQKMPE--RDLVSWNTMISILTRHGFG-FETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F ++P +D+ W T+++ L +HG E F E+ G L + + F
Sbjct: 75 LFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTR 134
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKAL 238
V DL G +V M L V V + +++MY+KCG C E ++ L
Sbjct: 135 VEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTL 194
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLIS-----AFSQAGVLEKP----RF----- 284
+ + + + F+ M RN + W ++I+ FS+ G L RF
Sbjct: 195 LEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLN 254
Query: 285 FFFFVSLLSGCSHSGPVTKGK----HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLI 340
F S+LS C+ SG V G+ + M + + +VD+ G + A K+
Sbjct: 255 FVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVF 314
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTK 366
+P K V W A+LG H K
Sbjct: 315 KYLP-KRNVVAWNAMLGGLAMHGRGK 339
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 160/342 (46%), Gaps = 64/342 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + +HGLV K+ + ++ + +DM+VKC +V A+
Sbjct: 292 CGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKR------------- 338
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F ++PE+D+VSW +MIS L ++ E+L F E+ GF ++ +
Sbjct: 339 ---------LFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSV 389
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA AS+ L++G +H + H DV +G+ LIDMY KCGC IE + Q+
Sbjct: 390 LSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGC--IEMAQQM------- 440
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLI----------SAFSQAGVL----EKPRFFFF 287
F L+ +N+ +W I A Q G L +P
Sbjct: 441 -------------FNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPN-EIT 486
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDE 342
F+++ S C HSG V +G+ YF M Y ++ CMVDLL + L+ EA +LI++
Sbjct: 487 FLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINK 546
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
MP P I GALL A ++ N +L +++ + + + G
Sbjct: 547 MPMPPDVQIIGALLSASSTYGNVELTPEMLKTVRNFECQESG 588
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 97/244 (39%), Gaps = 42/244 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP RD+VSW +IS + G + + F+ + ++ + + A +
Sbjct: 241 VFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRM---DVAPNAATFVSILGACGKLGC 297
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H V ++ V + L+DMY+KC S
Sbjct: 298 LNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKC----------------------ESVTD 335
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F+ + ++++SW +IS Q ++ F+ S+LS C+
Sbjct: 336 AKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACAS 395
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G + G+ H + ++ + + ++D+ G + A+++ + +PSK W A
Sbjct: 396 LGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSK-NIRTWNA 454
Query: 355 LLGA 358
+G
Sbjct: 455 YIGG 458
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------ 287
+ + V +Y+ G T A F+ M R+++SW LIS + +AG+ F
Sbjct: 221 VQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRMDVAP 280
Query: 288 ----FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLI 340
FVS+L C G + GK ++K+ + V ++D+ + +AK+L
Sbjct: 281 NAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLF 340
Query: 341 DEMPSKPTCVIWGALL 356
DE+P K V W +++
Sbjct: 341 DEIPEK-DIVSWTSMI 355
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 84/227 (37%), Gaps = 65/227 (28%)
Query: 1 MKACGSLKSLPIARKIHA---------QLISTCLISSIFL--QLIDDDYRVFCDIGPRYL 49
+ ACG L L + + IH +L+ + + +++ + + D R+F +I + +
Sbjct: 289 LGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDI 348
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++ +MI+G V+ C +G + +H
Sbjct: 349 VSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEY 408
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ D I S IDM+ KCG ++ A+ MF +P
Sbjct: 409 IDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQ----------------------MFNLLPS 446
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+++ +WN I L +G G E L F L G + + + FSA
Sbjct: 447 KNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSA 493
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 183/414 (44%), Gaps = 64/414 (15%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--------LIDD--DYRVFCDIGPRYLF 50
+KACG + +H + + T L + +F + I D R D G R L
Sbjct: 123 LKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLV 182
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
++N+M+ G V C G + +A L +++ S ++ +M G VD A F
Sbjct: 183 SWNSMVAGYVGC---GEVDLAQDLFDEMRQRDAFSWATMIDGYGEM---AGGVDRARELF 236
Query: 111 LRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
+M + L CW I ++F++MPER+++SW+ +I R G E L
Sbjct: 237 DQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALE 296
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F + G + A +A A + LE G LHS + + DV V + LIDMY+
Sbjct: 297 FFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYV 356
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA--------- 272
KC G A L FE M ++++++W V+I
Sbjct: 357 KC----------------------GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLD 394
Query: 273 ----FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMV 324
F+Q P +++L+ C+H+G V++G F M K ++ ++
Sbjct: 395 AIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALI 454
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
DLLG +G + +A+ I+ MP +PT +WG+LL +C SH +LAEL + L L
Sbjct: 455 DLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASL 508
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 155/353 (43%), Gaps = 51/353 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +GN+++ +H + + + + + I + K G+V+ A + + L
Sbjct: 201 CANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVI 260
Query: 122 KF-----GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
F G +++ MF M RD+V+W MI ++G E + F + G
Sbjct: 261 SFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCG 320
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+S A S AS+ L++G +H R + SL +E
Sbjct: 321 PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIR---SL-------------------LEQ 358
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAGVLEKPRFFF--- 286
S + A++TMYA GS A F+ + R+ I+W +I A +Q G E+ F
Sbjct: 359 SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 418
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
+V +LS CSH+G V +GK Y+ + ++ CMVDLL +GL
Sbjct: 419 LRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGL 478
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
EA++ I MP +P + WG+LL AC H N +LAEL LL +D G+
Sbjct: 479 FSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGA 531
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 27/253 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPERD VSW M+ L R G E + T +++ GF + S+ A
Sbjct: 14 VFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQA 73
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES---------SIQIGKALVTM 241
G +HS VV + V V + +++MY KCG + + S+ A+V++
Sbjct: 74 GAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSL 133
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF-------------FF 287
G A+ FE M R+++SW +I+ ++Q G+ K + F F
Sbjct: 134 NTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 193
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDE-M 343
S+LS C++ G V GK H + + Y ++ SG + A++++D+ M
Sbjct: 194 ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSM 253
Query: 344 PSKPTCVIWGALL 356
+ + + ALL
Sbjct: 254 ETDLNVISFTALL 266
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 152/344 (44%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
CL + ++ +HGL +K F S+ + ++++ CG + A F +M W
Sbjct: 20 CLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTW 79
Query: 122 KFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I +L F +MP +++ SW +MIS + G E + F++L +
Sbjct: 80 NIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVR 139
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + + +A A + DL+ G +H +V V + LIDMY+KCGC
Sbjct: 140 PNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGC------- 192
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+ A F M R ++SW +I+ + G E+ F
Sbjct: 193 ---------------LENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKL 237
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
F+ LL CSH G + +G+ +F +M ++ C+VDL +GLL E
Sbjct: 238 GVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEE 297
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A + I MP KP V+WGALLG C H N LAE +++L +LD
Sbjct: 298 AHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELD 341
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/437 (26%), Positives = 182/437 (41%), Gaps = 90/437 (20%)
Query: 2 KACGSLKSLPIARKIHAQLI-----STCLISSIFLQ------LIDDDYRVFCDIGPRYLF 50
KAC SL L + +HA+ I S +I + L ++ D +F + R +
Sbjct: 54 KACASLPFLHYVKALHAESIKAGSESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVV 113
Query: 51 TYNTMINGGVRCLCVGNIKMAL----HLHGLVKKFY------FVSDESIAKSS------- 93
T+N MI+G +R G+ + A + G + + F + IA +
Sbjct: 114 TWNAMISGYLRN---GDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVP 170
Query: 94 ------------IDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMF 132
+D + + G ++ A F M + F W K + +F
Sbjct: 171 HELKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVF 230
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+P R+L WN+MI+ ++GFG + L F + GF + SA A + L+
Sbjct: 231 DWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLD 290
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H + H ++ FV SGL+DMY KC G A
Sbjct: 291 VGKQIHHMIEHKGIVVNPFVLSGLVDMYAKC----------------------GDLVNAR 328
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSG 299
L FE + +N+ W +IS F+ G + FF F+++LS C+H G
Sbjct: 329 LVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRG 388
Query: 300 PVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
VT+ + M + ++ CMVDLLG +G L +A LI MP KP + GA+L
Sbjct: 389 LVTEALEVISKMEGYRIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMPMKPNDTVLGAML 448
Query: 357 GACCSHYNTKLAELVMR 373
GAC H + +AE VM+
Sbjct: 449 GACRIHSDMNMAEQVMK 465
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 31/184 (16%)
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSI 232
F A AS+ L + LH+ + DV +G+ L+ Y KCG E ++
Sbjct: 53 FKACASLPFLHYVKALHAESIKAGSESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNV 112
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
A+++ Y G T+ A L FE M + ++W +I F++ G + R F V
Sbjct: 113 VTWNAMISGYLRNGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVP-- 170
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H + +T MVD G + A+++ + MP + C +W
Sbjct: 171 -------------HELKNVVTWT------VMVDGYARIGEMEAAREVFEMMPER-NCFVW 210
Query: 353 GALL 356
+++
Sbjct: 211 SSMI 214
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 161/348 (46%), Gaps = 67/348 (19%)
Query: 50 FTYNTMINGGV--RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
FT +++I R C G+ LHG K F S+ + + +D++ + G +D A+
Sbjct: 162 FTLSSVIKAAAAERRGCCGH-----QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQ 216
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
++F + R+ VSWN +I+ R + L F +
Sbjct: 217 ----------------------LVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
GF S YA+ F A +S LE G +H+ ++ L F G+ L+DMY
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY------- 307
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
A+ GS A F+ +++R+++SW L++A++Q G ++ ++F
Sbjct: 308 ---------------AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFE 352
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSG 331
F+S+L+ CSHSG + +G HY+ M K ++V +VDLLG +G
Sbjct: 353 EMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAG 412
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L A + I+EMP +PT IW ALL AC H NT+L ++ +LD
Sbjct: 413 DLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELD 460
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 135/332 (40%), Gaps = 74/332 (22%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
YNT++ +C + +H + + F D + + ++M+ KCG+++ A
Sbjct: 63 YNTLLK---KCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARK--- 116
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG- 170
+F+KMP+RD V+W T+IS ++H + L F ++ G
Sbjct: 117 -------------------VFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGY 157
Query: 171 ----FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
F LSS++ A A R G LH V KC
Sbjct: 158 SPNEFTLSSVIKAAAAERRGCC-----GHQLHGFCV-------------------KC--- 190
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF 285
G +S++ +G AL+ +Y G A L F+ + RN +SW LI+ ++ EK F
Sbjct: 191 GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELF 250
Query: 286 ------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLS 330
F + SL CS +G + +GK M K ++D+ S
Sbjct: 251 QGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS 310
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G + +A+K+ D + +K V W +LL A H
Sbjct: 311 GSIHDARKIFDRL-AKRDVVSWNSLLTAYAQH 341
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 184/414 (44%), Gaps = 64/414 (15%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--------LIDD--DYRVFCDIGPRYLF 50
+KACG + +H + + T L + +F + I D R D G R L
Sbjct: 123 LKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLV 182
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
++N+M+ G V C G + +A L +++ S ++ +M G VD A F
Sbjct: 183 SWNSMVAGYVGC---GEVDLAQDLFDEMRQRDAFSWATMIDGYGEM---AGGVDRARELF 236
Query: 111 LRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
+M + L CW I ++F++MPER+++SW+ +I R G E L
Sbjct: 237 DQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALE 296
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F + + G + A +A A + LE G LHS + + DV V + LIDMY+
Sbjct: 297 FFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYV 356
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA--------- 272
KC G A L FE M ++++++W V+I
Sbjct: 357 KC----------------------GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLD 394
Query: 273 ----FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMV 324
F+Q P +++L+ C+H+G V++G F M K ++ ++
Sbjct: 395 AIKLFNQMETERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALI 454
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
DLLG +G + +A+ I+ MP +PT +WG+LL +C SH +LAEL + L L
Sbjct: 455 DLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASL 508
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 154/335 (45%), Gaps = 53/335 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C+G++ + + LH + K VS ++ S IDM+ KC VD A
Sbjct: 410 CACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNA--------------- 454
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F+ + +++VSW ++I L + FE L F ++ +S+ +
Sbjct: 455 -------LEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISV 506
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIESSIQ 233
SA A + L G +H+ + D F+ + ++DMY++CG N + +
Sbjct: 507 LSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQKKDVT 566
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLS 293
L+T YA+ G +A LA EL F + LE F+SLL
Sbjct: 567 AWNILLTGYAQQG---QAKLAVEL---------------FDKMLELEIHPDEITFISLLC 608
Query: 294 GCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CS SG VT+G YF M K+ T ++ C+VD+LG +G L +A I +MP +P
Sbjct: 609 ACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDA 668
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWGALL AC H N +L E+ + + + D K G
Sbjct: 669 AIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVG 703
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 127/341 (37%), Gaps = 59/341 (17%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM C + N ++ +HG V K F D S+ S I M+ G ++ AE+ F RM
Sbjct: 301 TMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+D+VSW MI+ L H F+ + T+ + G
Sbjct: 361 ----------------------ESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILP 398
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ + SA A + L+ G LH + V V + LIDMY KC C ++++++
Sbjct: 399 DEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKC--VDNALE 456
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA-------------FSQAGVLE 280
+ F +S +N++SW LI F Q
Sbjct: 457 V--------------------FRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESM 496
Query: 281 KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLI 340
KP +S+LS C+ G + +GK + +L + G +
Sbjct: 497 KPN-SVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPAL 555
Query: 341 DEMPS-KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
++ S K W LL KLA + +L+L++
Sbjct: 556 NQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEI 596
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 39/248 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F KM ERD+ SWN ++ + G E L + + + + + A V D
Sbjct: 154 VFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSD 213
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ G +H+ V+ G ES + +G AL+TMY + G
Sbjct: 214 IARGKEIHAHVIRF----------------------GFESDVDVGNALITMYVKCGDISN 251
Query: 251 ADLAFELMSRRNMISWMVLISA-FSQAGVLEKPRFF------------FFFVSLLSGCS- 296
A + F+ M +R+ ISW +IS F G LE F ++ S C
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311
Query: 297 -HSGPVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ + +G H + ++F ++ + G L EA+ + M SK V W A
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV-VSWTA 370
Query: 355 LLGACCSH 362
++ + SH
Sbjct: 371 MIASLVSH 378
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 44/212 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V +I +H V +F F SD + + I M+VKCG + A RML
Sbjct: 208 CAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNA-----RML------- 255
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
F KMP+RD +SWN MIS +G G E L F + + T
Sbjct: 256 ----------FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTV 305
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA + + G +H VV E D I + +L+ M
Sbjct: 306 ASACELLDNERLGRGVHGYVVKSEFGGD----------------------ISMNNSLIQM 343
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
Y+ G ++A+ F M ++++SW +I++
Sbjct: 344 YSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE----------- 280
+++G AL++M+ G+ A F MS R++ SW VL+ +++AG +
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191
Query: 281 ---KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLG 334
+P + F S+L C+ + +GK + +F + ++ + G +
Sbjct: 192 AEIRPN-VYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDIS 250
Query: 335 EAKKLIDEMPSKPTCVIWGALL 356
A+ L D+MP + + W A++
Sbjct: 251 NARMLFDKMPKRDR-ISWNAMI 271
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 154/335 (45%), Gaps = 53/335 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C+G++ + + LH + K VS ++ S IDM+ KC VD A
Sbjct: 410 CACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNA--------------- 454
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F+ + +++VSW ++I L + FE L F ++ +S+ +
Sbjct: 455 -------LEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISV 506
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIESSIQ 233
SA A + L G +H+ + D F+ + ++DMY++CG N + +
Sbjct: 507 LSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQKKDVT 566
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLS 293
L+T YA+ G +A LA EL F + LE F+SLL
Sbjct: 567 AWNILLTGYAQQG---QAKLAVEL---------------FDKMLELEIHPDEITFISLLC 608
Query: 294 GCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CS SG VT+G YF M K+ T ++ C+VD+LG +G L +A I +MP +P
Sbjct: 609 ACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDA 668
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWGALL AC H N +L E+ + + + D K G
Sbjct: 669 AIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVG 703
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 127/341 (37%), Gaps = 59/341 (17%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM C + N ++ +HG V K F D S+ S I M+ G ++ AE+ F RM
Sbjct: 301 TMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+D+VSW MI+ L H F+ + T+ + G
Sbjct: 361 ----------------------ESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILP 398
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ + SA A + L+ G LH + V V + LIDMY KC C ++++++
Sbjct: 399 DEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKC--VDNALE 456
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA-------------FSQAGVLE 280
+ F +S +N++SW LI F Q
Sbjct: 457 V--------------------FRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESM 496
Query: 281 KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLI 340
KP +S+LS C+ G + +GK + +L + G +
Sbjct: 497 KPN-SVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPAL 555
Query: 341 DEMPS-KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
++ S K W LL KLA + +L+L++
Sbjct: 556 NQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEI 596
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 39/248 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F KM ERD+ SWN ++ + G E L + + + + + A V D
Sbjct: 154 VFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSD 213
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ G +H+ V+ G ES + +G AL+TMY + G
Sbjct: 214 IARGKEIHAHVIRF----------------------GFESDVDVGNALITMYVKCGDISN 251
Query: 251 ADLAFELMSRRNMISWMVLISA-FSQAGVLEKPRFF------------FFFVSLLSGCS- 296
A + F+ M +R+ ISW +IS F G LE F ++ S C
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311
Query: 297 -HSGPVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ + +G H + ++F ++ + G L EA+ + M SK V W A
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV-VSWTA 370
Query: 355 LLGACCSH 362
++ + SH
Sbjct: 371 MIASLVSH 378
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 44/212 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V +I +H V +F F SD + + I M+VKCG + A RML
Sbjct: 208 CAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNA-----RML------- 255
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
F KMP+RD +SWN MIS +G G E L F + + T
Sbjct: 256 ----------FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTV 305
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA + + G +H VV E D I + +L+ M
Sbjct: 306 ASACELLDNERLGRGVHGYVVKSEFGGD----------------------ISMNNSLIQM 343
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
Y+ G ++A+ F M ++++SW +I++
Sbjct: 344 YSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE----------- 280
+++G AL++M+ G+ A F MS R++ SW VL+ +++AG +
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191
Query: 281 ---KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLG 334
+P + F S+L C+ + +GK + +F + ++ + G +
Sbjct: 192 AEIRPN-VYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDIS 250
Query: 335 EAKKLIDEMPSKPTCVIWGALL 356
A+ L D+MP + + W A++
Sbjct: 251 NARMLFDKMPKRDR-ISWNAMI 271
>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 161/337 (47%), Gaps = 68/337 (20%)
Query: 50 FTYNTMINGGVRCLC-VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
FTY +++N C V +++ A+ +H L+ K F + + + + +DM+ K G DYA
Sbjct: 342 FTYPSVLN----CFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYA-- 395
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+F+KM ++D++SW ++++ +G E L F E+
Sbjct: 396 --------------------FDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 435
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
G ++ A SA A + LE+G +H+ +LK +G+
Sbjct: 436 MGIHPDQIVIAAVLSACAELTVLEFGKQVHAN-------------------FLK---SGL 473
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF 288
SS+ + +LV+MYA+ G + A+ F+ M +++I+W LI ++Q G
Sbjct: 474 GSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNG----------- 522
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
G H+G V G+ YF +M + ++ CM+DLLG SG L EAK+L+++M
Sbjct: 523 ----RGRDHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMA 578
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+P +W ALL AC H N +L E NL +L+ K
Sbjct: 579 VQPDATVWKALLAACRVHGNVELGERAANNLFELEPK 615
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 111/287 (38%), Gaps = 49/287 (17%)
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGI---------IRLLIMFQKMPERDLVSWNTMISI 149
KCG VD A F M + W I +F + P R ++W+++IS
Sbjct: 53 KCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISG 112
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
R+G E L F E+ G + + + + LE G +H+ + + +
Sbjct: 113 YCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSN 172
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM-SRRNMISWMV 268
FV +GL+DMY KC C +A+ FEL +RN + W
Sbjct: 173 AFVVTGLVDMYAKCKC----------------------ILEAEYLFELAPDKRNHVLWTA 210
Query: 269 LISAFSQAG----VLEKPRFF---------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315
+++ +SQ G +E R F F S+L+ C G + +
Sbjct: 211 MVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSG 270
Query: 316 YTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
+ FV +VD+ G L A+++++ M V W +++ C
Sbjct: 271 FGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDP-VSWNSMIVGC 316
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 115/323 (35%), Gaps = 64/323 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +++ C + +HG + + F ++ + + +DM+ KCG + A
Sbjct: 241 FTFPSILTA---CGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARR- 296
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
M + M D VSWN+MI R G G E L F +
Sbjct: 297 ---------------------MLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLR 335
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ Y + + + V D+ +HS +V G E
Sbjct: 336 HMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVK----------------------TGFE 373
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+ + ALV MYA+ G A FE M+ +++ISW L++ G E+ F
Sbjct: 374 AYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEM 433
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLL 333
++LS C+ + GK K +V + G +
Sbjct: 434 RIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCI 493
Query: 334 GEAKKLIDEMPSKPTCVIWGALL 356
+A K+ D M + + W AL+
Sbjct: 494 EDANKVFDSMEIQDV-ITWTALI 515
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131
+H H + K F S+ + +DM+ KC + E+ +L L P
Sbjct: 160 IHAHAI--KTQFDSNAFVVTGLVDMYAKCKCI--LEAEYLFELAPD-------------- 201
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
+R+ V W M++ +++G G + + F ++ G + + + +A S+
Sbjct: 202 -----KRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISAC 256
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
+G +H +V +VFVGS L+DMY KCG
Sbjct: 257 GFGAQVHGCIVRSGFGANVFVGSALVDMYSKCG 289
>gi|115484703|ref|NP_001067495.1| Os11g0213500 [Oryza sativa Japonica Group]
gi|77549336|gb|ABA92133.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113644717|dbj|BAF27858.1| Os11g0213500 [Oryza sativa Japonica Group]
gi|125576589|gb|EAZ17811.1| hypothetical protein OsJ_33354 [Oryza sativa Japonica Group]
Length = 470
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 145/328 (44%), Gaps = 68/328 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG + + + +A + +DM+ K G +D A + +F
Sbjct: 125 IHGFAVRLGLMGNVVVAAALLDMYAKAGFLDDA----------------------VRVFD 162
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTF----IELWNHGFGLSSMLYATAFSARASVY 189
+M ERD V WN M++ R G ET F +E N GL ++ A+
Sbjct: 163 EMTERDAVVWNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNGLQAVPSVLNICAKEG-- 220
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+L G +H R+V C +S I +G AL+ MYA+ G
Sbjct: 221 ELMKGREIHGRMVR---------------------CLAFDSDIAVGNALINMYAKCGRVN 259
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGC 295
+ F M +R+++SW +I ++S G E KP + F S+LS C
Sbjct: 260 VSQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITF-TSVLSSC 318
Query: 296 SHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SHSG VT+G+ F +M K ++ CMVDLLG +G + EA LI +MP +P +
Sbjct: 319 SHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASV 378
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLD 379
WGALL AC H N + E+ L +L+
Sbjct: 379 WGALLSACAMHNNVDVGEIAAFRLFELE 406
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 68/230 (29%)
Query: 1 MKACGSLKSLPIARKIHA-----QLISTCLISSIFLQL------IDDDYRVFCDIGPRYL 49
++AC L + IH L+ ++++ L + +DD RVF ++ R
Sbjct: 110 VRACAELPDAVLGGVIHGFAVRLGLMGNVVVAAALLDMYAKAGFLDDAVRVFDEMTERDA 169
Query: 50 FTYNTMINGGVR----------------------------------CLCVGNIKMALHLH 75
+N M+ G R C G + +H
Sbjct: 170 VVWNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNGLQAVPSVLNICAKEGELMKGREIH 229
Query: 76 G-LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
G +V+ F SD ++ + I+M+ KCG V+ +++ +F
Sbjct: 230 GRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQA----------------------VFSG 267
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
M +RD+VSW+TMI + HG G + L ++E+ + G + + + + S+
Sbjct: 268 MQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITFTSVLSS 317
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 155/353 (43%), Gaps = 51/353 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +GN+++ +H + + + + + I + K G+V+ A + + L
Sbjct: 307 CANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVI 366
Query: 122 KF-----GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
F G +++ MF M RD+V+W MI ++G E + F + G
Sbjct: 367 SFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCG 426
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+S A S AS+ L++G +H R + SL +E
Sbjct: 427 PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIR---SL-------------------LER 464
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAGVLEKPRFFF--- 286
S + A++TMYA GS A F+ + R+ I+W +I A +Q G E+ F
Sbjct: 465 SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 524
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
+V +LS CSH+G V +GK Y+ + ++ CMVDLL +GL
Sbjct: 525 LRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGL 584
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
EA++ I MP +P + WG+LL AC H N +LAEL LL +D G+
Sbjct: 585 FSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGA 637
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 27/253 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPERD VSW M+ L R G E + T +++ GF + S+ A
Sbjct: 120 VFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQA 179
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES---------SIQIGKALVTM 241
G +HS VV + V V + +++MY KCG S S+ A+V++
Sbjct: 180 GAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSL 239
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF-------------FF 287
G A+ FE M R+++SW +I+ ++Q G+ K + F F
Sbjct: 240 NTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 299
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDE-M 343
S+LS C++ G V GK H + + Y ++ SG + A++++D+ M
Sbjct: 300 ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSM 359
Query: 344 PSKPTCVIWGALL 356
+ + + ALL
Sbjct: 360 ETDLNVISFTALL 372
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 183/414 (44%), Gaps = 64/414 (15%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--------LIDD--DYRVFCDIGPRYLF 50
+KACG + +H + + T L + +F + I D R D G R L
Sbjct: 123 LKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLV 182
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
++N+M+ G V C G + +A L +++ S ++ +M G VD A F
Sbjct: 183 SWNSMVAGYVGC---GEVDLAQDLFDEMRQRDAFSWATMIDGYGEM---AGGVDRARELF 236
Query: 111 LRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
+M + L CW I ++F++MPER+++SW+ +I R G E L
Sbjct: 237 DQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALE 296
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F + G + A +A A + LE G LHS + + DV V + LIDMY+
Sbjct: 297 FFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYV 356
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA--------- 272
KC G A L FE M ++++++W V+I
Sbjct: 357 KC----------------------GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLD 394
Query: 273 ----FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMV 324
F+Q P +++L+ C+H+G V++G F M K ++ ++
Sbjct: 395 AIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALI 454
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
DLLG +G + +A+ I+ MP +PT +WG+LL +C SH +LAEL + L L
Sbjct: 455 DLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASL 508
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 189/416 (45%), Gaps = 81/416 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KACG + A +H I + S +F+Q LI ++F DI + L
Sbjct: 221 LKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTL 280
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++N+MI + +K+ D + + DM+ KCG + A++
Sbjct: 281 VSWNSMIE-------ITGVKI---------------DIIVRNALXDMYAKCGNLHSAQAI 318
Query: 110 FLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F R ++ W + G I + +F +MP +++VSWN+MIS R G E L
Sbjct: 319 FDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREAL 378
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F ++ N + +A + + DL G +H+ ++ + + V + + LIDMY
Sbjct: 379 DLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMY 438
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-L 279
KCG +VT D+ E M +N++SW V+I A + G L
Sbjct: 439 AKCG------------PVVT---------ALDIFLE-MPGKNLVSWNVIIGALALHGCGL 476
Query: 280 EKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCM 323
E + F LLS CSHSG V G +YF M ++ CM
Sbjct: 477 EAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACM 536
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
VDLLG GLLGEA +LI MP KP V+WGALLGAC H N ++ + +++ LL+L+
Sbjct: 537 VDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELE 592
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 161/348 (46%), Gaps = 67/348 (19%)
Query: 50 FTYNTMINGGV--RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
FT +++I R C G+ LHG K F S+ + + +D++ + G +D A+
Sbjct: 162 FTLSSVIKAAAAERRGCCGH-----QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQ 216
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
++F + R+ VSWN +I+ R + L F +
Sbjct: 217 ----------------------LVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
GF S YA+ F A +S LE G +H+ ++ L F G+ L+DMY
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY------- 307
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
A+ GS A F+ +++R+++SW L++A++Q G ++ ++F
Sbjct: 308 ---------------AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFE 352
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSG 331
F+S+L+ CSHSG + +G HY+ M K ++V +VDLLG +G
Sbjct: 353 EMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAG 412
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L A + I+EMP +PT IW ALL AC H NT+L ++ +LD
Sbjct: 413 DLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELD 460
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 135/332 (40%), Gaps = 74/332 (22%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
YNT++ +C + +H + + F D + + ++M+ KCG+++ A
Sbjct: 63 YNTLLK---KCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARK--- 116
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG- 170
+F+KMP+RD V+W T+IS ++H + L F ++ G
Sbjct: 117 -------------------VFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGY 157
Query: 171 ----FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
F LSS++ A A R G LH V KC
Sbjct: 158 SPNEFTLSSVIKAAAAERRGCC-----GHQLHGFCV-------------------KC--- 190
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF 285
G +S++ +G AL+ +Y G A L F+ + RN +SW LI+ ++ EK F
Sbjct: 191 GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELF 250
Query: 286 ------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLS 330
F + SL CS +G + +GK M K ++D+ S
Sbjct: 251 QGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS 310
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G + +A+K+ D + +K V W +LL A H
Sbjct: 311 GSIHDARKIFDRL-AKRDVVSWNSLLTAYAQH 341
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 151/335 (45%), Gaps = 63/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + N++M +H +V KF D + + +DM+ KC ++ A
Sbjct: 242 CSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDAR-------------- 287
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KMPERDLV+W MI G E+L F ++ G + T
Sbjct: 288 --------FLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTV 339
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A + + + + + LDV +G+ +IDM+ KCGC +ES+ +I
Sbjct: 340 VFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGC--VESAREI------- 390
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
F+ M +N+ISW +I+A+ G K F
Sbjct: 391 -------------FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITL 437
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
VSLL CSH+G V +G +F+ M + Y+ ++ C+VDLLG +G L EA KLI+ M
Sbjct: 438 VSLLYACSHAGLVEEGLRFFSLMWE-DYSVRADVKHYTCVVDLLGRAGRLDEALKLIESM 496
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ +WGA LGAC +H + LAE +LL+L
Sbjct: 497 TVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLEL 531
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 133/324 (41%), Gaps = 63/324 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + N++M +H +V KF D + + +DM+VKC ++ A
Sbjct: 40 CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDAR-------------- 85
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM ERDLV+W MI G E+L F ++ G + T
Sbjct: 86 --------FLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTV 137
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A + + + + + LDV +G+ +IDMY KCGC +ES+ +I
Sbjct: 138 VFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGC--VESAREI------- 188
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
F+ M +N+ISW +I+A+ G K F
Sbjct: 189 -------------FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITL 235
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-YFVC--MVDLLGLSGLLGEAKKLIDEMPS 345
SLL CS + G+ + KF +FVC +VD+ G + +A+ L D+MP
Sbjct: 236 ASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPE 295
Query: 346 KPTCVIWGALLG--ACCSHYNTKL 367
+ V W ++G A C + N L
Sbjct: 296 RDL-VTWTVMIGGYAECGNANESL 318
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/427 (20%), Positives = 159/427 (37%), Gaps = 104/427 (24%)
Query: 1 MKACGSLKSLPIARKIH----------AQLISTCLISS-IFLQLIDDDYRVFCDIGPRYL 49
++AC LK+L + R IH + L+ + + I+D +F + R L
Sbjct: 37 IRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDL 96
Query: 50 FTYNTMING--------------------GV------------RCLCVGNIKMALHLHGL 77
T+ MI G GV C +G + A +
Sbjct: 97 VTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDY 156
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+++ F D + + IDM+ KCG V+ A +F +M E
Sbjct: 157 IQRKKFQLDVILGTAMIDMYAKCGCVESARE----------------------IFDRMEE 194
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
++++SW+ MI+ HG G + L F + + G + A+ A + + +L+ G +
Sbjct: 195 KNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLI 254
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H V LD FV + L+DMY KC + A F+
Sbjct: 255 HHIVYKFGLDLDHFVCAALVDMYGKC----------------------REIEDARFLFDK 292
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M R++++W V+I +++ G + F V+++ C+ G + K
Sbjct: 293 MPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 352
Query: 305 K--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+ + KF M+D+ G + A+++ D M K + W A++ A
Sbjct: 353 RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGY 411
Query: 362 HYNTKLA 368
H + A
Sbjct: 412 HGQGRKA 418
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 41/217 (18%)
Query: 178 YATAFSARA--SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
Y F RA + +L+ G +H V LD FV + L+DMY+KC
Sbjct: 31 YTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKC------------ 78
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------- 286
+ A F+ M R++++W V+I +++ G + F
Sbjct: 79 ----------REIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 128
Query: 287 ----FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKL 339
V+++ C+ G + K + + KF M+D+ G + A+++
Sbjct: 129 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 188
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
D M K + W A++ A H + A + R +L
Sbjct: 189 FDRMEEK-NVISWSAMIAAYGYHGQGRKALDLFRMML 224
>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
Length = 590
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 193/444 (43%), Gaps = 103/444 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID--------DDYRVFCDIGP-RYL 49
+ AC ++L R++HA++I+ ++FL +L+ DD R D P R +
Sbjct: 17 ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76
Query: 50 FTYNTMING----------------GVRCLCVGN----------------IKMALHLHGL 77
++ TMI+G +R C+ N I +H L
Sbjct: 77 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ K F S + S +DM+ K + A +F +PE
Sbjct: 137 LVKTNFESHMFVGSSLLDMYAKSENIQEARR----------------------VFDTLPE 174
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VS +IS + G E L F +L++ G + + + T +A + + L++G +
Sbjct: 175 RDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQV 234
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ E V + + LIDMY KCG K L + F+
Sbjct: 235 HALILRKELPFFVALQNSLIDMYSKCG-----------KLLYSRRV-----------FDN 272
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGK 305
M R+++SW ++ + + G+ + F +++LSGCSH G V +G
Sbjct: 273 MLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGL 332
Query: 306 HYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
F + K +T ++ C++DLLG SG L +A LI+ MP + T IWG+LLGAC
Sbjct: 333 DIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRV 392
Query: 362 HYNTKLAELVMRNLLQLDVKVFGS 385
H N + ELV + LL+++ + G+
Sbjct: 393 HANVHVGELVAQKLLEMEPENAGN 416
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 200/451 (44%), Gaps = 97/451 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KACG + A +H I + S +F+Q LI ++F DI + L
Sbjct: 95 LKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTL 154
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKK-------FYFVSDESIAKSS--------- 93
++N+MI G +GN K A L +++ F FV+ S+ S
Sbjct: 155 VSWNSMIGGYAH---MGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYV 211
Query: 94 -------------------IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII 126
+DM+ KCG + A++ F R ++ W + G I
Sbjct: 212 HFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSI 271
Query: 127 RLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+ +F +MP +++VSWN+MIS R G E L F ++ N + +A
Sbjct: 272 EVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAAC 331
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ + DL G +H+ ++ + + V + + LIDMY KCG +VT
Sbjct: 332 SQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG------------PVVT----- 374
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLL 292
D+ E M +N++SW V+I A + G LE + F LL
Sbjct: 375 ----ALDIFLE-MPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLL 429
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
S CSHSG V G +YF M ++ CMVDLLG GLLGEA +LI MP KP
Sbjct: 430 SACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPD 489
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
V+WGALLGAC H N ++ + +++ LL+L+
Sbjct: 490 VVVWGALLGACRIHGNVEIGKQILKQLLELE 520
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 154/319 (48%), Gaps = 49/319 (15%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRL-LIMFQKMPER 138
SI ID++ CG ++ A+ F ML+ + W K G I + +F++M +R
Sbjct: 143 SIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDR 202
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+VSWN+MI+ L + G E L F E+W+HGF T A + ++ G +H
Sbjct: 203 SVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIH 262
Query: 199 SRVVHMEPSLD-VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
S D + VG+ L+D Y KCG +E++ ++ F
Sbjct: 263 SYAESSRLLRDFISVGNSLVDFYCKCGI--LETAWRV--------------------FNE 300
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M ++N++SW +IS + G E F FV +LS C+H+G V +G
Sbjct: 301 MPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERG 360
Query: 305 KHYFTAMA---KFTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
++ FT+M K +F CMVDLL +G + EA+ L+ MP +P V+WG+LL A
Sbjct: 361 RNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAYR 420
Query: 361 SHYNTKLAELVMRNLLQLD 379
+ + K AE ++ L++L+
Sbjct: 421 TIGDVKHAECAVKELIELE 439
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 193/444 (43%), Gaps = 103/444 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID--------DDYRVFCDIGP-RYL 49
+ AC ++L R++HA++I+ ++FL +L+ DD R D P R +
Sbjct: 17 ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76
Query: 50 FTYNTMING----------------GVRCLCVGN----------------IKMALHLHGL 77
++ TMI+G +R C+ N I +H L
Sbjct: 77 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ K F S + S +DM+ K + A +F +PE
Sbjct: 137 LVKTNFESHMFVGSSLLDMYAKSENIQEARR----------------------VFDTLPE 174
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VS +IS + G E L F +L++ G + + + T +A + + L++G +
Sbjct: 175 RDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQV 234
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ E V + + LIDMY KCG K L + F+
Sbjct: 235 HALILRKELPFFVALQNSLIDMYSKCG-----------KLLYSRRV-----------FDN 272
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGK 305
M R+++SW ++ + + G+ + F +++LSGCSH G V +G
Sbjct: 273 MLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGL 332
Query: 306 HYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
F + K +T ++ C++DLLG SG L +A LI+ MP + T IWG+LLGAC
Sbjct: 333 DIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRV 392
Query: 362 HYNTKLAELVMRNLLQLDVKVFGS 385
H N + ELV + LL+++ + G+
Sbjct: 393 HANVHVGELVAQKLLEMEPENAGN 416
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/437 (26%), Positives = 182/437 (41%), Gaps = 104/437 (23%)
Query: 8 KSLPIARKIHAQLISTCLISSI-----------FLQLIDDDYRVFCDIGPRYLFTYNTMI 56
++L R++HAQ ++ +I + + +DD Y +F + R +++ M+
Sbjct: 73 RNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 132
Query: 57 NG--------------------GVR------------CLCVGNIKMALHLHGLVKKFYFV 84
G G R C + N++M +H +V KF
Sbjct: 133 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLD 192
Query: 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144
D + + +DM+VKC ++ A +F KM ERDLV+W
Sbjct: 193 LDHFVCAALVDMYVKCREIEDAR----------------------FLFDKMQERDLVTWT 230
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
MI G E+L F ++ G + T A A + + + +
Sbjct: 231 VMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRK 290
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+ LDV +G+ +IDMY KCGC +ES+ +I F+ M +N+I
Sbjct: 291 KFQLDVILGTAMIDMYAKCGC--VESAREI--------------------FDRMEEKNVI 328
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
SW +I+A+ G K F SLL CSH+G V +G +F++M
Sbjct: 329 SWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSM 388
Query: 312 AK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
+ T ++ C+VDLLG +G L EA KLI M + +WGA LGAC +H + L
Sbjct: 389 WEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVL 448
Query: 368 AELVMRNLLQLDVKVFG 384
AE +LL+L + G
Sbjct: 449 AEKAATSLLELQSQNPG 465
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 151/341 (44%), Gaps = 63/341 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + N++M +H +V KF D + + +DM+ KC ++ A
Sbjct: 846 CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDAR-------------- 891
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM ERDLV+W MI G E+L F ++ G + T
Sbjct: 892 --------FLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTV 943
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A + + + + + LDV +G+ +IDM+ KCGC +ES+ +I
Sbjct: 944 VFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGC--VESAREI------- 994
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
F+ M +N+ISW +I+A+ G K F
Sbjct: 995 -------------FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITL 1041
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
VSLL CSH+G V +G +F+ M + Y+ ++ C+VDLLG +G L EA KLI M
Sbjct: 1042 VSLLYACSHAGLVEEGLRFFSXMWE-DYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSM 1100
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+ +WGA LGAC +H + LAE +LL+L + G
Sbjct: 1101 TXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPG 1141
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 98/256 (38%), Gaps = 43/256 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA--SV 188
+F M RD VSW+ M+ + G TF EL G + Y F RA +
Sbjct: 792 LFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDN--YTLPFVIRACRDL 849
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+L+ G +H V LD FV + L+DMY KC
Sbjct: 850 KNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKC----------------------REI 887
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
+ A F+ M R++++W V+I +++ G + F V+++ C
Sbjct: 888 EDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFAC 947
Query: 296 SHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ G + K + + KF M+D+ G + A+++ D M K + W
Sbjct: 948 AKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-NVISW 1006
Query: 353 GALLGACCSHYNTKLA 368
A++ A H + A
Sbjct: 1007 SAMIAAYGYHGQGRKA 1022
>gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g25270, chloroplastic-like [Cucumis sativus]
Length = 489
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/442 (27%), Positives = 201/442 (45%), Gaps = 113/442 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL------ISSIFLQL------IDDDYRVFCDIGPRY 48
++ C L+++ +IH +LI T L ISS L+L ++D ++VF ++G R
Sbjct: 61 LELCYQLQAIHHGIRIH-RLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRN 119
Query: 49 L--FTYNTMING--------------------GVR------------CLCVGNIKMALHL 74
F +N++I+G GV C +G+I++ +
Sbjct: 120 FSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAV 179
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H V + F D + + +DM+ KCG I+R +F +
Sbjct: 180 HRHVVRSGFAGDVFVLNALVDMYSKCGC----------------------IVRARKVFDQ 217
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+ +D+VSWN+M++ TRHG FE L F ++ G+ S+ +T S ++ +++
Sbjct: 218 IEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLS---NISSMKFK 274
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
H+H V+ +G+E ++ I +L+ MYA+ G +A
Sbjct: 275 LHIHGWVIR----------------------HGVEWNLSIANSLIVMYAKCGKLNRAKWL 312
Query: 255 FELMSRRNMISWMVLISA-FSQAGVLEKPRFF---------FFFVSLLSGCSHSGPVTKG 304
F+ M +++M+SW +ISA F+ A L FVSLLS C+H G V +G
Sbjct: 313 FQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEG 372
Query: 305 KH-YFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLID---EMPSKPTCVIWGALLG 357
YF K+ ++ CMV+L G +G++ EA K+I E+ + PT IWGALL
Sbjct: 373 XELYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPT--IWGALLY 430
Query: 358 ACCSHYNTKLAELVMRNLLQLD 379
AC H + +AE+ L +L+
Sbjct: 431 ACYLHSDVDIAEIAAERLFELE 452
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/456 (24%), Positives = 188/456 (41%), Gaps = 94/456 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+KA L+ L + H +I L S +F+ LI YRVF +I R +
Sbjct: 143 IKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDV 202
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++N+MI V+ C + + +H
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSY 262
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI------- 130
+++ +++ + +DM+ KCG+V+ A+ F +M + W ++
Sbjct: 263 IERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA 322
Query: 131 --MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAFSARAS 187
+F MP +D+ +WN +IS + G E L F EL + + + SA A
Sbjct: 323 QGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQ 382
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ ++ G +H + L+ + + LIDMY KC G
Sbjct: 383 LGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKC----------------------GD 420
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294
QKA + F + R+++ W +I+ + G + F F ++L
Sbjct: 421 LQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCA 480
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSH G V +G+ +F M + Y ++ CMVD+LG +GLL EA +LI++MP P
Sbjct: 481 CSHVGLVEEGRTFFNQM-ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAA 539
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+WGALLGAC H N LAE L++L+ G+
Sbjct: 540 SVWGALLGACTIHENVVLAEQACSQLIELEPGNHGA 575
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 108/290 (37%), Gaps = 55/290 (18%)
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI---------------MFQKMPERDLVSW 143
+C + +ML LF F RL+ +F ++P +L +W
Sbjct: 44 QCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTW 103
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSML-YATAFSARASVYDLEWGPHLHSRVV 202
NT+I ++L F+ + + + A + + +L G H V+
Sbjct: 104 NTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVI 163
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+ DVF+ + LI Y KCG G+ + F + RR+
Sbjct: 164 KVLLGSDVFILNSLIHFYAKCGELGLGYRV----------------------FVNIPRRD 201
Query: 263 MISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK--HY 307
++SW +I+AF Q G E+ F V +LS C+ G+ H
Sbjct: 202 VVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHS 261
Query: 308 FTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ + + M+D+ G + +AK+L D+MP K V W +L
Sbjct: 262 YIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEK-DIVSWTTML 310
>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 147/332 (44%), Gaps = 63/332 (18%)
Query: 59 GVRCLCVGNIKMAL--HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP 116
G+ +C G I + LH +F D S+ + M+V+CG+VD+A
Sbjct: 164 GLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARK-------- 215
Query: 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
+F MPE+ L++WN MIS ++G L + ++ G +
Sbjct: 216 --------------LFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPV 261
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
S+ A + G H R V L F + +LK
Sbjct: 262 TLVGVLSSCAHL-----GAHAAGREVEQRIELSGFG----FNPFLK-------------N 299
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
AL+ MYA G+ KA F+ M+ +N+ISW +I+ + G E F
Sbjct: 300 ALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELP 359
Query: 287 ---FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKL 339
FVS+LS CSH+G KG +YFTAM + ++ C+VDLLG +G L EA+KL
Sbjct: 360 DGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKL 419
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
I M +P +WGALLGAC H N +LAEL
Sbjct: 420 IGSMSVEPDGAVWGALLGACKIHRNVELAELA 451
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/324 (20%), Positives = 124/324 (38%), Gaps = 61/324 (18%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
LHG V K + + S I M+ KC + A F
Sbjct: 77 QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVF---------------------D 115
Query: 133 QKMPERDL-VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
+ R+L V +N +I+ + + + + F ++ G ++++ A L
Sbjct: 116 ENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHL 175
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
+G LH+ V D+ VG+ L+ MY++CG S+ + L
Sbjct: 176 GFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCG------SVDFARKL------------- 216
Query: 252 DLAFELMSRRNMISWMVLISAFSQAG----VLEKPRFFFF---------FVSLLSGCSHS 298
F+ M + +I+W +IS ++Q G VL+ R F V +LS C+H
Sbjct: 217 ---FDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHL 273
Query: 299 GPVTKGKHYFT--AMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G G+ ++ F + + ++++ G L +A+ + D M K + W A+
Sbjct: 274 GAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEK-NVISWTAI 332
Query: 356 LGACCSHYNTKLAELVMRNLLQLD 379
+ H +LA + ++ D
Sbjct: 333 IAGYGMHGQGELAVQLFDEMISSD 356
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 88/237 (37%), Gaps = 39/237 (16%)
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+ SWN + L R E L + ++ G ++ + AF + AS+ G
Sbjct: 18 QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-------------GKALVTMYA 243
LH V+ + FV + LI MY C C+ I S+ ++ AL+ Y+
Sbjct: 78 LHGHVIKTGCEPEPFVQTSLISMY--CKCSTIASARKVFDENHHSRNLAVCYNALIAGYS 135
Query: 244 EGGSTQKADLAFELMSRR----NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299
A L F M + N ++ + LI V P F SL H+
Sbjct: 136 LNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIP------VCAGPIHLGFGTSL-----HAC 184
Query: 300 PVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V G ++ T Y C G + A+KL D MP K + W A++
Sbjct: 185 SVRFGLDGDLSVGNCLLTMYVRC--------GSVDFARKLFDGMPEK-GLITWNAMI 232
>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
Length = 502
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 126/268 (47%), Gaps = 40/268 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA--TAFSARASV 188
+F +MPERD V WN M++ R G ETL F + ++ L A + A+
Sbjct: 160 VFDEMPERDAVVWNCMVTGYARAGRSEETLELFRKAQIESVDMARDLRAVPNVLNVCANE 219
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L G +H R+V C +S I +G ALV MYA+ G
Sbjct: 220 GQLMKGREIHGRMVR---------------------CFAFDSDIAVGNALVDMYAKCGQV 258
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGC 295
A F M RN++SW LIS + G+ E R + F+S+LS C
Sbjct: 259 DGAQAVFASMKVRNVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVKPNCITFISILSSC 318
Query: 296 SHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SHSG V+ G+ F +M+K ++ CMVDLLG +G + EA +I +MP +P +
Sbjct: 319 SHSGLVSDGRRIFESMSKVHAVEPTADHYACMVDLLGRAGAIEEAVGIIRKMPMEPGASL 378
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLD 379
WGALL AC +H N + E+ L +L+
Sbjct: 379 WGALLSACATHNNVDVGEVAAYKLFELE 406
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 119/467 (25%), Positives = 195/467 (41%), Gaps = 106/467 (22%)
Query: 2 KACGSLKSLPIARKIHAQLIS------TCLISSIFLQLI-----DDDYRVFCDIGPRYLF 50
KAC LK+ + + ++ ++S +C+ SI I D R F +I + +F
Sbjct: 119 KACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVF 178
Query: 51 TYNTMING--------------------GVR------------CLCVGNIKMALHLHGL- 77
+N M++G GV+ C + ++ +HG
Sbjct: 179 MWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 238
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW----------KFG--- 124
+K SD + S +D + KC +V+ A F + L W ++G
Sbjct: 239 IKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGK 298
Query: 125 -----IIRLLI---MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
R+ I +F ++ RD+V WN++IS + G L E+ ++++
Sbjct: 299 AALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTV 358
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+A A + + L G +H ++ F+ + LIDMY +CG
Sbjct: 359 TMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCG------------ 406
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF---------- 285
S QK+ F+LM +R+++SW V+IS + G ++ F
Sbjct: 407 ----------SIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKP 456
Query: 286 --FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKK 338
F +LLS CSHSG + +G YF M K Y + CMVDLL +G E +
Sbjct: 457 NHITFTNLLSACSHSGLIEEGWKYFKMM-KTEYAMDPAVEQYACMVDLLSRAGQFNETLE 515
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
I++MP +P +WG+LLGAC H N LAE R L +L+ + G+
Sbjct: 516 FIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGN 562
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/438 (21%), Positives = 178/438 (40%), Gaps = 106/438 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLI----STC-LISSIFLQL------IDDDYRVFCDIGPRYL 49
++ C L +L + ++HAQL+ C + S L++ ++D R+F + R +
Sbjct: 17 LQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNV 76
Query: 50 FTYNT--------------------MINGGVR------------CLCVGNIKMALHLHGL 77
F++ M+N GVR C + N ++ ++
Sbjct: 77 FSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDY 136
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ F + + S +DM +KCG +D A F+++
Sbjct: 137 MLSIGFEGNSCVKGSILDMFIKCGRMDIARR----------------------FFEEIEF 174
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D+ WN M+S T G + L F ++ G +S+ A+A SA ++ L G +
Sbjct: 175 KDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 234
Query: 198 HSRVVHMEP-SLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALV-----TMY 242
H + +E D+ VG+ L+D Y KC + ++ + A++ T Y
Sbjct: 235 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQY 294
Query: 243 AEGGST----QKADLA---FELMSRRNMISWMVLISAFSQAG----VLEKPRFFFF---- 287
+G + Q+ +A F +S R+++ W +ISA +Q+G L+ R
Sbjct: 295 GDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 354
Query: 288 -----FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKK 338
VS L CS + +GK H F TC F+ ++D+ G G + ++++
Sbjct: 355 VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD-TCNFILNSLIDMYGRCGSIQKSRR 413
Query: 339 LIDEMPSKPTCVIWGALL 356
+ D MP + V W ++
Sbjct: 414 IFDLMPQRDL-VSWNVMI 430
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 39/221 (17%)
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+YA+ +Y+L G +H+++V NG++ +G
Sbjct: 12 IYASILQKCRKLYNLRLGFQVHAQLV----------------------VNGVDVCEFLGS 49
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------- 287
L+ +Y + G + A F+ MS RN+ SW ++ + G E+ F+
Sbjct: 50 RLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRP 109
Query: 288 ----FVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLI 340
F + CS GK + M + +C ++D+ G + A++
Sbjct: 110 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 169
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+E+ K +W ++ S K A V R ++ VK
Sbjct: 170 EEIEFKDV-FMWNIMVSGYTSKGEFKKALNVFRKMVLEGVK 209
>gi|413944451|gb|AFW77100.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 678
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 149/335 (44%), Gaps = 63/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G ++M +H K +F D + ++I ++ +CG ++ AE+
Sbjct: 326 CSSFGQLRMVRQVHCYALKTFFKLDTLLLNATITVYGRCGDINSAET------------- 372
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F M E D++SW +++ T++G E L F ++ G G +
Sbjct: 373 ---------VFYLMEENDIISWTALLTCYTQNGLDEEVLLFFRKMLRKGLGSPVFCITSV 423
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A +S+ +L G +HSR + + GI+ + ALVT+
Sbjct: 424 LRASSSISNLAVGLQIHSRTLKL----------------------GIDDDNSVQNALVTL 461
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
YA GS Q A F MS R++++W L+++FSQ G + + F + F
Sbjct: 462 YANCGSVQVALKIFNSMSNRDIVTWNALLTSFSQHGSEVAAIQLFDLMQEEGICPDAYTF 521
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYT-----CYFVCMVDLLGLSGLLGEAKKLIDEM 343
V LLS CS G V +G YF M K Y ++ CMVDLL +G +A ID M
Sbjct: 522 VGLLSSCSRMGLVKEGCEYFNEM-KEKYNLEPKMVHYTCMVDLLARAGRFCDAMDFIDAM 580
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P +P ++W ALL +C H N L + + +L++
Sbjct: 581 PYEPDQILWEALLASCKVHGNLGLGRIAAKKILEI 615
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 44/229 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT ++ G C ++ + +H V KF D+S+A + +DM+ KCG VD +
Sbjct: 113 FTLGALVAG---CSRARDVDAGMQVHACVAKFGVDEDDSVAAALVDMYAKCGWVDSS--- 166
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIELWN 168
W+ F P+R ++SW +MI+ L G G+ T + L+
Sbjct: 167 -----------WR--------AFTLAPQRSVLSWTSMIACLVNQGSSGYYD--TSLLLFK 205
Query: 169 HGFGLSSMLYATAFSARASVYD----LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
L +S V+D L G LH ++ M +D +G+ L+ MY +CG
Sbjct: 206 KMLALKVWPTNATYSCILKVFDTPDLLSVGMQLHGCLLKMGTEVDTALGTALMTMYGRCG 265
Query: 225 CNGIESSIQIG----------KALVTMYAEGGSTQKADLAFELMSRRNM 263
G++ ++ AL+ YA G +A F+ M +NM
Sbjct: 266 --GVDEIPRLACRIRHDALSRTALLGAYARTGYNAEAIGVFKEMIMKNM 312
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV-- 188
+F +MP R+LVSW+ +IS HG E F + HG G S +F+ A V
Sbjct: 63 LFDEMPRRNLVSWSVVISGSAHHGVLAEAFALFSHML-HGAGHGSWDRPDSFTLGALVAG 121
Query: 189 ----YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
D++ G +H+ V G++ + ALV MYA+
Sbjct: 122 CSRARDVDAGMQVHACVAKF----------------------GVDEDDSVAAALVDMYAK 159
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
G + AF L +R+++SW +I+ G
Sbjct: 160 CGWVDSSWRAFTLAPQRSVLSWTSMIACLVNQG 192
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 125/454 (27%), Positives = 189/454 (41%), Gaps = 109/454 (24%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFL------------QLIDDDYRVFCDIGPRYLFT 51
C +++ L ++IHA LI T LIS ++ Y VF I + F
Sbjct: 35 CSTMREL---KQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFV 91
Query: 52 YNTMINGGVRC-------------LC---------------------VGNIKMALHLHGL 77
+NT+I G R LC +G + LHG+
Sbjct: 92 WNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGM 151
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII-RL 128
V K D I + + M+V CG + A FL M+ + W K G+I +
Sbjct: 152 VIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQA 211
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-----GFGLSSMLYATAFS 183
+F +MP+R+ VSWN+MIS R+G + L F E+ GF + S+L A A+
Sbjct: 212 QNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYL 271
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
+ E G +H +V L+ V + LIDMY KCGC IE + +
Sbjct: 272 GAS-----EQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGC--IEEGLNV--------- 315
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
FE ++ + W +I + G E+ F F+
Sbjct: 316 -----------FECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIG 364
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+L+ C+HSG V + +F M K Y ++ MV++LG +GLL EA+ LI MP
Sbjct: 365 VLTACAHSGEVHRADEFFRLM-KEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPV 423
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ VIW +LL AC N ++A+ + L +LD
Sbjct: 424 EEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLD 457
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 113/353 (32%), Gaps = 128/353 (36%)
Query: 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVR------------------------------- 61
LID +F ++ R ++N+MI+G VR
Sbjct: 207 LIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLN 266
Query: 62 -CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C +G + +H + + F + + + IDM+ KCG ++
Sbjct: 267 ACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEG-------------- 312
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
L +F+ P++ L WN+MI L +GF + F EL G
Sbjct: 313 --------LNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSG---------- 354
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+EP F+G ++T
Sbjct: 355 -----------------------LEPDSVSFIG------------------------VLT 367
Query: 241 MYAEGGSTQKADLAFELMSRRNMIS-----WMVLISAFSQAGVLEKPRFFF--------- 286
A G +AD F LM + MI + ++++ AG+LE+
Sbjct: 368 ACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDT 427
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAKF--TYTCYFVCMVDLLGLSGLLGEA 336
+ SLLS C G V K + K TC +V + + GL EA
Sbjct: 428 VIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEA 480
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 159/356 (44%), Gaps = 51/356 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ + G C+ + HG+V K F D + S I + CG ++ A
Sbjct: 93 FTFTFLFQGCSNCVA---FDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWV 149
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F + W I+ L +F KM ER+ +SWN MIS ++G E L
Sbjct: 150 FDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEAL 209
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F E+ +S + + SA + + L+ G +H + +D + + LIDMY
Sbjct: 210 ALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMY 269
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KCG I+ ++Q AF +R++ ++ IS + G E
Sbjct: 270 AKCG--SIDLAMQ--------------------AFSTSRKRDVSAYTAAISGLAMNGCSE 307
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCM 323
+ F ++++L CSH+G V KG HYF +M+ ++ CM
Sbjct: 308 EALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACM 367
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
VDLLG +GLL EA+K + MP KP VIWGALLGAC + N ++ + V L++ D
Sbjct: 368 VDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESD 423
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 25/202 (12%)
Query: 128 LLIMFQKMPERDLVSWNTMI---SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
LL++ + + +NT I S R G ++ F+ + ++ + F
Sbjct: 42 LLLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQG 101
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIG 235
++ + G H V+ +DVFV + +I Y CG E +
Sbjct: 102 CSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSW 161
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------- 286
+++ G+ +A F M+ RN ISW ++IS ++Q G ++ F
Sbjct: 162 NSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQE 221
Query: 287 ----FFVSLLSGCSHSGPVTKG 304
VS+LS CS G + G
Sbjct: 222 PNSAILVSVLSACSQLGALDHG 243
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 163/360 (45%), Gaps = 79/360 (21%)
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
+FT T+++ C C G+++ +H +++ S+ + + +DM+ KCG+++ A S
Sbjct: 99 IFTITTVLHA---CACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANS 155
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF----I 164
FL +MP +D++SWNTMI +++ E L F +
Sbjct: 156 VFL----------------------EMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL 193
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
E+ G L+ +L A A S+ L+ G +H ++
Sbjct: 194 EMKPDGTTLACILPACA-----SLASLDRGKEVHGHILR--------------------- 227
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS---------- 274
NG S Q+ ALV MY + G A L F+++ +++I+W V+I+ +
Sbjct: 228 -NGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAIT 286
Query: 275 ------QAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMV 324
QAG+ F+S+L CSHSG + +G +F M ++ C+V
Sbjct: 287 TFNEMRQAGIEPDE---VSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIV 343
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
DLL SG L A K I MP +P IWGALL C H++ KLAE V ++ +L+ + G
Sbjct: 344 DLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTG 403
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 117/312 (37%), Gaps = 60/312 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G++ + +HG K + + +DM+ KCG +D A
Sbjct: 8 CANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGA--------------- 52
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+++F M R +V+W ++I+ R G E + F E+ G T
Sbjct: 53 -------ILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTV 105
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A LE G +H+ + + ++FV + L+DMY KC
Sbjct: 106 LHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKC------------------ 147
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------------VLEKPRFFFFFV 289
GS + A+ F M +++ISW +I +S+ VLE
Sbjct: 148 ----GSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLA 203
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+L C+ + +GK + + F+ +VD+ G+ A+ L D +P+K
Sbjct: 204 CILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTK 263
Query: 347 PTCVIWGALLGA 358
+ W ++
Sbjct: 264 DL-ITWTVMIAG 274
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ L +H V + +D SI + ++++ +CG +E AF
Sbjct: 457 CAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCG---RSEEAF----------- 502
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+++ +D ++WN +IS + + L F+++ G + + +A
Sbjct: 503 --------SLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISA 554
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ D++ G +H R V G S ++ AL+++
Sbjct: 555 ISALANLADIKQGKQVHGRAVK----------------------TGHTSETEVANALISL 592
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
Y + GS + A + F MS RN +SW +I++ SQ G LE F F
Sbjct: 593 YGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTF 652
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ +L+ CSH G V +G YF +M+ ++ C+VD+LG +G L A++ +DEMP
Sbjct: 653 IGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMP 712
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+IW LL AC H N ++ EL ++LL+L+
Sbjct: 713 ITANAMIWRTLLSACKVHKNIEIGELAAKHLLELE 747
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 138/329 (41%), Gaps = 64/329 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY ++ C C G I++ +H L K F SD ++ IDM+ K G +D A
Sbjct: 347 FTYPCILR---TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKAR-- 401
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
++L M +K RD+VSW +MI+ +H F E L TF E+ +
Sbjct: 402 -----------------KILEMLEK---RDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ A+A SA A + + G +H+RV +G
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVY----------------------VSGYA 479
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
+ I I LV +YA G +++A F + ++ I+W LIS F Q+ + ++ F
Sbjct: 480 ADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKM 539
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLL 333
F+S +S ++ + +GK K +T ++ L G G +
Sbjct: 540 GQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSI 599
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+AK + EM + V W ++ +C H
Sbjct: 600 EDAKMIFSEMSLRNE-VSWNTIITSCSQH 627
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 61/305 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H V K F S+ + + I +++ G+ AE F ML FC
Sbjct: 166 IHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDML----FC------------- 208
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
D V++NT+IS + G G L F E+ G + A+ +A ASV DL+
Sbjct: 209 -----DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G LHS ++ S D L+D+Y+KCG IE++ I
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCG--DIETAHDI------------------- 302
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGP 300
F L R N++ W +++ A+ Q L K F F + +L C+ +G
Sbjct: 303 -FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQ 361
Query: 301 VTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ G+ H + F Y ++D+ G L +A+K++ EM K V W +++
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKIL-EMLEKRDVVSWTSMIA 420
Query: 358 ACCSH 362
H
Sbjct: 421 GYVQH 425
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 112/327 (34%), Gaps = 93/327 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--------------QLIDDDYRVFCDIGP 46
+ AC K R IHAQ+ S F+ +L + RVFCD+
Sbjct: 151 LSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAE---RVFCDMLF 207
Query: 47 RYLFTYNTMING--------------------GVR------------CLCVGNIKMALHL 74
T+NT+I+G G+R C VG+++ L
Sbjct: 208 CDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H + K D S +D++VKCG ++ A +F
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD----------------------IFNL 305
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
++V WN M+ + ++ F ++ G + Y +E G
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG 365
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+HS + D++V LIDMY K GC KA
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSKYGC----------------------LDKARKI 403
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEK 281
E++ +R+++SW +I+ + Q E+
Sbjct: 404 LEMLEKRDVVSWTSMIAGYVQHDFCEE 430
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 41/245 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+++ RD VSW M+S + G G E F L S ++ TA
Sbjct: 100 VFKELSSRDHVSWVAMLSGYAQSGLGKE-----------AFRLYSQMHWTAVIPT----- 143
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLI--DMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
P++ S V+ +F +I +Y + C S +G AL+ +Y GS
Sbjct: 144 ----PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFC----SETFVGNALIALYLGFGSF 195
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
+ A+ F M + +++ LIS +Q G E F SLL+ C
Sbjct: 196 KLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC 255
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLID--EMPSKPTCVIWG 353
+ G + KGK + + K + ++ LL L G+ + D + + V+W
Sbjct: 256 ASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWN 315
Query: 354 ALLGA 358
+L A
Sbjct: 316 LMLVA 320
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF 285
G+ + IG L+ +YA+ G +A F+ +S R+ +SW+ ++S ++Q+G+ E R +
Sbjct: 73 GLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLY 132
Query: 286 ------------FFFVSLLSGCSHSGPVTKGK 305
+ S+LS C+ +G+
Sbjct: 133 SQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 162/347 (46%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +++ C ++ + +H V KF S+ ++ + +D++ KCG ++ +
Sbjct: 339 FTFASVLQA---CASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENS--- 392
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ +F+++P+R+ V+WNT+I + G G + F + H
Sbjct: 393 -------------------MKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEH 433
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + Y++ A AS+ LE G +HS + + D V + LIDMY KC
Sbjct: 434 DMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKC------ 487
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF--- 285
G A L F+ M++R+ +SW +I +S G+ +E F
Sbjct: 488 ----------------GRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMM 531
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAK--FTYTC--YFVCMVDLLGLSGL 332
FV +LS CS++G + KG+ +F +M+K C ++ CMV LLG G
Sbjct: 532 QHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGR 591
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA KLI E+ +P+ ++W ALLGAC H L + +++L+++
Sbjct: 592 FDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEME 638
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 112/268 (41%), Gaps = 39/268 (14%)
Query: 105 YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
Y F+ + L+ II +F++MP+ DL+ W+ MI+ + E L F+
Sbjct: 268 YDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFL 327
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
+ ++ +A+ A AS L+ G +HS V+ + +VFV + ++D+Y KCG
Sbjct: 328 RMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCG 387
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF 284
IE+S+++ FE + RN ++W +I + Q G E+
Sbjct: 388 --EIENSMKL--------------------FEELPDRNDVTWNTIIVGYVQLGDGERAMN 425
Query: 285 FF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLG 328
F + S+L + + G + K Y T ++D+
Sbjct: 426 LFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYA 485
Query: 329 LSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G + +A+ D+M +K V W A++
Sbjct: 486 KCGRINDARLTFDKM-NKRDEVSWNAMI 512
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 65/206 (31%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
++AC S SL + ++IH+ ++ L S++F+ I++ ++F ++ R
Sbjct: 345 LQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND 404
Query: 50 FTYNTMING------GVRCL--------------------------CVGNIKMALHLHGL 77
T+NT+I G G R + + ++ L +H L
Sbjct: 405 VTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSL 464
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K + D +A S IDM+ KCG ++ A + F KM +
Sbjct: 465 TIKTMYNKDTVVANSLIDMYAKCGRINDAR----------------------LTFDKMNK 502
Query: 138 RDLVSWNTMISILTRHGFGFETLCTF 163
RD VSWN MI + HG E L F
Sbjct: 503 RDEVSWNAMICGYSMHGMSMEALNLF 528
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 39/243 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP+ + +S+ T+ +R + L + ++ G ++ ++ T S+
Sbjct: 92 LFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDL 151
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LH+ V + D FVG+ LID Y S++ G+
Sbjct: 152 AHLCWTLHACVYKLGHHADAFVGTALIDAY----------SVR------------GNVDV 189
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVS-LLSGCSH 297
A F+ + ++M+SW +++ +++ E+ F F +S L C
Sbjct: 190 ARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLG 249
Query: 298 SGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
GK K Y + +++L SG + +A++L +EMP K + W
Sbjct: 250 LEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP-KTDLIPWSL 308
Query: 355 LLG 357
++
Sbjct: 309 MIA 311
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 151/335 (45%), Gaps = 62/335 (18%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-I 125
HG+V Y + + IDM+ + G +D+A F +M ++ W K G +
Sbjct: 202 HGVVVDLY------LGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNL 255
Query: 126 IRLLIMFQKMPERDLVSWNTMI---SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
+ +F +MP RD++SW +MI S+ +H E + F E+ + ATA
Sbjct: 256 VAAKKLFNEMPSRDVISWTSMIIGYSLAKQHA---EAVKLFQEMMVSMVKPDEITVATAL 312
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA A + L+ G +H + + DVFVG+ LIDMY C C +E ++Q+
Sbjct: 313 SACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMY--CKCGVVEKALQV-------- 362
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
F M R+ +SW +IS + G E F FV
Sbjct: 363 ------------FNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFV 410
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMP 344
+L C+H G V KG +F +M TY ++ C+VDLL SG L A I +MP
Sbjct: 411 GVLLACAHVGLVDKGVEHFKSMEN-TYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMP 469
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P VIW LL AC H N LAE+V + LL LD
Sbjct: 470 IVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLD 504
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 22/109 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++ +H ++K SD + S IDM+ KCG V+ A
Sbjct: 315 CAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKA--------------- 359
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
L +F M RD VSW ++IS L +GF L F ++ G
Sbjct: 360 -------LQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEG 401
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 183/408 (44%), Gaps = 81/408 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC + ++ + + +H + S +F+Q ++ + +VF ++ R
Sbjct: 242 VKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDA 301
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F + M++ R VG++ A L + + + + + ID + + G V+ AE
Sbjct: 302 FAWTAMVSALAR---VGDMDSARKLFEEMPE----RNTATWNTMIDGYARLGNVESAE-- 352
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
++F +MP +D++SW TMI+ +++ + L + E+ +
Sbjct: 353 --------------------LLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLN 392
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + +T SA A + LE G +H V+ +LDV++GS L+DMY KC
Sbjct: 393 GIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKC------ 446
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
GS + L F ++ +N+ W +I + G EK F
Sbjct: 447 ----------------GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIM 490
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSG 331
F+S+LS C+H+G V +G+ F +M + Y ++ CMVD+L SG
Sbjct: 491 EREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTR-DYDIRPDIRHYGCMVDMLSKSG 549
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EA +LI M +P +IWGALL C H N ++AE + L+ L+
Sbjct: 550 YLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILE 597
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 193/444 (43%), Gaps = 103/444 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID--------DDYRVFCDIGP-RYL 49
+ AC ++L R++HA++I+ ++FL +L+ DD R D P R +
Sbjct: 49 ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 108
Query: 50 FTYNTMING----------------GVRCLCVGN----------------IKMALHLHGL 77
++ TMI+G +R C+ N I +H L
Sbjct: 109 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 168
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ K F S + S +DM+ K + A +F +PE
Sbjct: 169 LVKTNFESHMFVGSSLLDMYAKSENIQEARR----------------------VFDTLPE 206
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VS +IS + G E L F +L++ G + + + T +A + + L++G +
Sbjct: 207 RDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQV 266
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ E V + + LIDMY KCG K L + F+
Sbjct: 267 HALILRKELPFFVALQNSLIDMYSKCG-----------KLLYSRRV-----------FDN 304
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGK 305
M R+++SW ++ + + G+ + F +++LSGCSH G V +G
Sbjct: 305 MLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGL 364
Query: 306 HYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
F + K +T ++ C++DLLG SG L +A LI+ MP + T IWG+LLGAC
Sbjct: 365 DIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRV 424
Query: 362 HYNTKLAELVMRNLLQLDVKVFGS 385
H N + ELV + LL+++ + G+
Sbjct: 425 HANVHVGELVAQKLLEMEPENAGN 448
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 164/360 (45%), Gaps = 55/360 (15%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
++ F + G+ C +G +HG V KF S+ + S ++M+VKC ++D A
Sbjct: 117 KFTFPFVVKSCAGLMCYDLGK-----QVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDA 171
Query: 107 ESAFLRMLNPSLFCWKF---GIIRLLIM------FQKMPERDLVSWNTMISILTRHGFGF 157
F M W G +RL M F++M ++ + SW ++S R G
Sbjct: 172 HKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYA 231
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
+ L F + G + + A A + LE G +H F
Sbjct: 232 DALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIH------------FYADKAG 279
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+ C CN AL+ MYA+ GS + F+ M+ R++ISW +I + G
Sbjct: 280 FLRNICVCN----------ALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHG 329
Query: 278 ----------VLEKPRF---FFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----Y 319
++K + FV LLS C+H+G + +G YF +M K Y +
Sbjct: 330 RAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESM-KRDYNIEPGVEH 388
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ C+V+LLGLSG L +A +LI +MP KP IWG+LL +C SH N ++A + M +LL+L+
Sbjct: 389 YGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELE 448
>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
Length = 772
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 160/365 (43%), Gaps = 67/365 (18%)
Query: 36 DDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSID 95
D Y CD N++++ C + +++ H K + D S+A I
Sbjct: 416 DTYEFLCDA--------NSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIG 467
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF 155
M+ +CG D+A C FG+ +L + D+V+WNT+IS G
Sbjct: 468 MYGRCGKFDHA-------------CKIFGLAKL--------KGDVVTWNTLISSYAHLGH 506
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
+ + ++ G +S T SA A++ LE G +HS V M DV + +
Sbjct: 507 SNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTA 566
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
LIDMY KCG Q+G A F+ M + ++++W V+IS +
Sbjct: 567 LIDMYAKCG--------QLGTARRI--------------FDSMLQHDVVAWNVMISGYGM 604
Query: 276 AGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---Y 319
G ++ F F+++LS C HSG + +G+ FT M K++ +
Sbjct: 605 HGEAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPNLKH 664
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ CMVDLLG SG L EA+ ++ MP +P IWG LL AC H + ++ + + D
Sbjct: 665 YACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKAFASD 724
Query: 380 VKVFG 384
+ G
Sbjct: 725 AENEG 729
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 22/147 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++PE+D+VSW ++I I G E + F E+ G +L + S + +
Sbjct: 276 LFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGN 335
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ G H+ ++ +V VG+ AL++MY +
Sbjct: 336 VHGGKAFHAVIMKRNFGDNVLVGN----------------------ALISMYGKFELVDN 373
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG 277
A F L+ +R+ SW ++I + +AG
Sbjct: 374 AGRVFRLLHQRDADSWNLMIVGYCKAG 400
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 40/213 (18%)
Query: 122 KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGF---GFETLCTFIELWNHGFGL-SSM 176
+ G++R + +F++M ERD+V+W ++S R+G G L + L G +S
Sbjct: 161 RCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVRLAGDGKARPNSR 220
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ A + +L G LH V + G+ S +
Sbjct: 221 TMESGLEACGVLDELNSGRCLHGYAVKV----------------------GVGDSPMVIS 258
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
AL +MY++ ST+ A F + ++++SW LI + G++ + F
Sbjct: 259 ALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQP 318
Query: 287 --FFVS-LLSGCSHSGPVTKGKHYFTAMAKFTY 316
VS LLSG +SG V GK + + K +
Sbjct: 319 DDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNF 351
>gi|221327716|gb|ACM17537.1| putative pentatricopeptide [Oryza australiensis]
Length = 470
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 146/328 (44%), Gaps = 68/328 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG + +++ +A + +DM+ K +D A + +F
Sbjct: 125 IHGFAVRLGLMANVVVAAAFLDMYAKAVLLDDA----------------------VRVFD 162
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTF----IELWNHGFGLSSMLYATAFSARASVY 189
+MPERD + WN M++ R G ET F +E N GL ++ A+ S
Sbjct: 163 EMPERDAIVWNCMVTGYARAGRAAETFDIFSRAQVEAVNIVNGLQAVPSVLNICAKES-- 220
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+L G +H +V C +S I +G AL+ MYA+ G
Sbjct: 221 ELMKGREIHGMMVR---------------------CLAFDSDIAVGNALINMYAKCGRVN 259
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGC 295
+ F M R+++SW +I ++S G E KP + F S+LS C
Sbjct: 260 VSQAVFSGMQERDVVSWSTMIHSYSIHGKGEQALKVYMEMLSQGVKPNWITF-TSVLSSC 318
Query: 296 SHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SHSG VT+G+ F +M K T ++ CMVDLLG +G + EA LI +MP +P +
Sbjct: 319 SHSGLVTEGQKIFESMTKVHGVHPATEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASV 378
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLD 379
WGALL AC H N + E+ L +L+
Sbjct: 379 WGALLSACAMHNNVDVGEIAAFRLFELE 406
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 68/230 (29%)
Query: 1 MKACGSLKSLPIARKIHA-----QLISTCLISSIFLQ------LIDDDYRVFCDIGPRYL 49
++AC L + IH L++ ++++ FL L+DD RVF ++ R
Sbjct: 110 VRACTELPDAVLGAVIHGFAVRLGLMANVVVAAAFLDMYAKAVLLDDAVRVFDEMPERDA 169
Query: 50 FTYNTMINGGVR----------------------------------CLCVGNIKMALHLH 75
+N M+ G R C + +H
Sbjct: 170 IVWNCMVTGYARAGRAAETFDIFSRAQVEAVNIVNGLQAVPSVLNICAKESELMKGREIH 229
Query: 76 G-LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
G +V+ F SD ++ + I+M+ KCG V+ +++ +F
Sbjct: 230 GMMVRCLAFDSDIAVGNALINMYAKCGRVNVSQA----------------------VFSG 267
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
M ERD+VSW+TMI + HG G + L ++E+ + G + + + + S+
Sbjct: 268 MQERDVVSWSTMIHSYSIHGKGEQALKVYMEMLSQGVKPNWITFTSVLSS 317
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 150/324 (46%), Gaps = 61/324 (18%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+HG K+ F + + S +DM+ +CG + + ++F
Sbjct: 216 QIHGCCWKYGFQENVFVGSSLVDMYARCGELRESR----------------------LVF 253
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++ ++ VSWN +IS R G G E L F+++ GFG + Y+ + ++ LE
Sbjct: 254 DELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLE 313
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G LH+ HM S VG +G L+ MYA+ G+ A
Sbjct: 314 QGKWLHA---HMMKSGKKLVG-------------------YVGNTLLHMYAKSGNICDAK 351
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHS 298
F+ + + +++S ++ ++Q G+ ++ F F+S+L+ CSH+
Sbjct: 352 KVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHA 411
Query: 299 GPVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G + +G +YF M K+ ++ +VDL G +GLL +AK I+EMP +P IWGAL
Sbjct: 412 GLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGAL 471
Query: 356 LGACCSHYNTKLAELVMRNLLQLD 379
LGA H NT++ + +L+LD
Sbjct: 472 LGASKMHKNTEMGAYAAQKVLELD 495
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 126/316 (39%), Gaps = 76/316 (24%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
YN ++ RC +G +K +H + F +D I S + M+ KCG+++ A
Sbjct: 94 YNKLLK---RCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQ--- 147
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFE---TLCTFIELWN 168
+F +M +D+V+W +MI+ ++ G+ L F+E+
Sbjct: 148 -------------------VFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVR 188
Query: 169 HG-----FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
G F LSS++ F S D G +H +VFVGS L+DMY +C
Sbjct: 189 DGLRPNEFALSSLVKCCGF--LGSCVD---GKQIHGCCWKYGFQENVFVGSSLVDMYARC 243
Query: 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
G +++ L F+ + +N +SW LIS F++ G E+
Sbjct: 244 ----------------------GELRESRLVFDELESKNEVSWNALISGFARKGEGEEAL 281
Query: 284 FFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL- 329
F + +LL S +G + +GK M K LL +
Sbjct: 282 GLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMY 341
Query: 330 --SGLLGEAKKLIDEM 343
SG + +AKK+ D +
Sbjct: 342 AKSGNICDAKKVFDRL 357
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 151/335 (45%), Gaps = 62/335 (18%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-I 125
HG+V Y + + IDM+ + G +D+A F +M ++ W K G +
Sbjct: 243 HGVVVDLY------LGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNL 296
Query: 126 IRLLIMFQKMPERDLVSWNTMI---SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
+ +F +MP RD++SW +MI S+ +H E + F E+ + ATA
Sbjct: 297 VAAKKLFNEMPSRDVISWTSMIIGYSLAKQHA---EAVKLFQEMMVSMVKPDEITVATAL 353
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA A + L+ G +H + + DVFVG+ LIDMY C C +E ++Q+
Sbjct: 354 SACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMY--CKCGVVEKALQV-------- 403
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
F M R+ +SW +IS + G E F FV
Sbjct: 404 ------------FNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFV 451
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMP 344
+L C+H G V KG +F +M TY ++ C+VDLL SG L A I +MP
Sbjct: 452 GVLLACAHVGLVDKGVEHFKSMEN-TYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMP 510
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P VIW LL AC H N LAE+V + LL LD
Sbjct: 511 IVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLD 545
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 22/109 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++ +H ++K SD + S IDM+ KCG V+ A
Sbjct: 356 CAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKA--------------- 400
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
L +F M RD VSW ++IS L +GF L F ++ G
Sbjct: 401 -------LQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEG 442
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ L +H V + +D SI + ++++ +CG +E AF
Sbjct: 457 CAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCG---RSEEAF----------- 502
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+++ +D ++WN +IS + + L F+++ G + + +A
Sbjct: 503 --------SLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISA 554
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ D++ G +H R V G S ++ AL+++
Sbjct: 555 ISALANLADIKQGKQVHGRAVK----------------------TGHTSETEVANALISL 592
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
Y + GS + A + F MS RN +SW +I++ SQ G LE F F
Sbjct: 593 YGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTF 652
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ +L+ CSH G V +G YF +M+ ++ C+VD+LG +G L A++ +DEMP
Sbjct: 653 IGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMP 712
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+IW LL AC H N ++ EL ++LL+L+
Sbjct: 713 ITANAMIWRTLLSACKVHKNIEIGELAAKHLLELE 747
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 137/329 (41%), Gaps = 64/329 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY ++ C C G I++ +H L K F SD ++ IDM+ K +D A
Sbjct: 347 FTYPCILR---TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKAR-- 401
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
++L M +K RD+VSW +MI+ +H F E L TF E+ +
Sbjct: 402 -----------------KILEMLEK---RDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ A+A SA A + + G +H+RV +G
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVY----------------------VSGYA 479
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
+ I I LV +YA G +++A F + ++ I+W LIS F Q+ + E+ F
Sbjct: 480 ADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKM 539
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLL 333
F+S +S ++ + +GK K +T ++ L G G +
Sbjct: 540 SQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSI 599
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+AK + EM + V W ++ +C H
Sbjct: 600 EDAKMIFSEMSLRNE-VSWNTIITSCSQH 627
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 123/305 (40%), Gaps = 61/305 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H V K F S+ + + I +++ G+ AE F ML FC
Sbjct: 166 IHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDML----FC------------- 208
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
D V++NT+IS + G G L F E+ G + A+ +A ASV DL+
Sbjct: 209 -----DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G LHS ++ S D L+D+Y+KCG IE++ I
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCG--DIETAHDI------------------- 302
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGP 300
F L R N++ W +++ A+ Q L K F F + +L C+ +G
Sbjct: 303 -FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQ 361
Query: 301 VTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ G+ H + F Y ++D+ L +A+K++ EM K V W +++
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKIL-EMLEKRDVVSWTSMIA 420
Query: 358 ACCSH 362
H
Sbjct: 421 GYVQH 425
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 112/327 (34%), Gaps = 93/327 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--------------QLIDDDYRVFCDIGP 46
+ AC K R IHAQ+ S F+ +L + RVFCD+
Sbjct: 151 LSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAE---RVFCDMLF 207
Query: 47 RYLFTYNTMING--------------------GVR------------CLCVGNIKMALHL 74
T+NT+I+G G+R C VG+++ L
Sbjct: 208 CDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H + K D S +D++VKCG ++ A +F
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD----------------------IFNL 305
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
++V WN M+ + ++ F ++ G + Y +E G
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELG 365
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+HS + NG ES + + L+ MY++ KA
Sbjct: 366 EQIHSLSIK----------------------NGFESDMYVSGVLIDMYSKYRCLDKARKI 403
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEK 281
E++ +R+++SW +I+ + Q E+
Sbjct: 404 LEMLEKRDVVSWTSMIAGYVQHDFCEE 430
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 41/245 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+++ RD VSW M+S + G G E F L S ++ TA
Sbjct: 100 VFKELSSRDHVSWVAMLSGYAQRGLGKE-----------AFRLYSQMHWTAVIPT----- 143
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLI--DMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
P++ S V+ +F +I +Y + C S +G AL+ +Y GS
Sbjct: 144 ----PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFC----SETFVGNALIALYLGFGSF 195
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
+ A+ F M + +++ LIS +Q G E F SLL+ C
Sbjct: 196 KLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC 255
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLID--EMPSKPTCVIWG 353
+ G + KGK + + K + ++ LL L G+ + D + + V+W
Sbjct: 256 ASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWN 315
Query: 354 ALLGA 358
+L A
Sbjct: 316 LMLVA 320
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
+++++ G+ + IG L+ +YA+ G +A F+ +S R+ +SW+ ++S ++Q
Sbjct: 62 VLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQ 121
Query: 276 AGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGK 305
G+ E R + + S+LS C+ +G+
Sbjct: 122 RGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164
>gi|242054925|ref|XP_002456608.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
gi|241928583|gb|EES01728.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
Length = 458
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 162/358 (45%), Gaps = 51/358 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T++ + + + LH K S+ + + +D + K GA+ A
Sbjct: 42 FTFGTVLRSAT---ALRAPRAGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMREAHGV 98
Query: 110 FLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETL 160
P++ + I LL +F++MPER++VSWN MI ++ G E +
Sbjct: 99 LDDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMIGGCSQAGLSEEAV 158
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F+E+ G + + ++ A+ L G +H+ + LDV++G+ L+ Y
Sbjct: 159 NLFLEMCREGVTPNESTFPCVLTSVANAGALGVGRSVHASAIKFLGKLDVYIGNSLVSFY 218
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+CG +E S+ LAF+ M+R+N++SW LI ++Q G E
Sbjct: 219 ARCGS--LEDSV--------------------LAFKKMNRKNVVSWNALICGYAQNGKGE 256
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF--TAMAK--FTYTCYFVCM 323
+ + + LL GC+H+G V +G F T M + ++ C+
Sbjct: 257 EALDAYRMMRATGLKPDNVTLLGLLFGCNHAGLVDEGYALFKTTEMEQPGILKPEHYACV 316
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
VDLL + AK+ ++E+P +P W AL+G C H+N +LAE V + + LD K
Sbjct: 317 VDLLSRAKRFDNAKRFLEELPFEPGIGFWKALVGGCQIHWNRELAESVAKRIHALDPK 374
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP RD+VS I LTR G + L F ++ G + + T + ++ G
Sbjct: 1 MPHRDVVSATAAIGALTRRGRHRDALALFSQVLADGVAPNEFTFGTVLRSATALRAPRAG 60
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGI-----ESSIQIGKALVTMYAEG 245
LH+ + +VFVGS L+D Y K G +G+ E ++ AL+ +
Sbjct: 61 VQLHACAAKLGLCSNVFVGSALLDHYAKMGAMREAHGVLDDTREPNVVSYTALIAGLLKN 120
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLL 292
G +AD F M RN++SW +I SQAG+ E+ F F +L
Sbjct: 121 GMFDEADRLFRRMPERNVVSWNAMIGGCSQAGLSEEAVNLFLEMCREGVTPNESTFPCVL 180
Query: 293 SGCSHSGPVTKGKHYFTAMAKF 314
+ +++G + G+ + KF
Sbjct: 181 TSVANAGALGVGRSVHASAIKF 202
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/423 (24%), Positives = 187/423 (44%), Gaps = 68/423 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+ C + ++L + ++IH ++ + L + L LI+ D VF + R +
Sbjct: 539 LSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDV 598
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ MI G C G A+ L ++ F +S S + + +D +
Sbjct: 599 MSWTAMIGG---CADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKV 655
Query: 110 FLRMLNPSLFCWKFGIIRLLI--------------MFQKMPERDLVSWNTMISILTRHGF 155
+LN S + G+ LI +F KMP RD+VSWN +I+ ++G
Sbjct: 656 IAYILN-SGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGL 714
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
G + ++ + + + +A +S LE G +H+ +V +
Sbjct: 715 GQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRK---------- 764
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
++ +++G AL++MYA+ GS +A F+ + +N+++W +I+A++Q
Sbjct: 765 ------------LQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQ 812
Query: 276 AGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTC 318
G+ K FF F S+LS C+H+G V +G F++M
Sbjct: 813 HGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIE 872
Query: 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
++ C+V LLG + EA+ LI++MP P +W LLGAC H N LAE N L+L
Sbjct: 873 HYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKL 932
Query: 379 DVK 381
+ +
Sbjct: 933 NAR 935
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/448 (21%), Positives = 167/448 (37%), Gaps = 108/448 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+ AC S L +KIH+Q+I +Q + +VF I PR +
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDV 194
Query: 50 FTYNTMI--------------------NGGVRCLCVGNIKM------------ALHLHGL 77
+YNTM+ + G+ V I + +H L
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ SD + + + M V+CG VD A+ AF + +
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF----------------------KGTAD 292
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+V +N +I+ L +HG E + + + G L+ Y + +A ++ LE G +
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
HS + S DV +G+ LI MY +C G KA F
Sbjct: 353 HSHISEDGHSSDVQIGNALISMYARC----------------------GDLPKARELFYT 390
Query: 258 MSRRNMISWMVLISAFS-QAGVLEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
M +R++ISW +I+ ++ + E R + F+ LLS C++S G
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG 450
Query: 305 K--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K H + + ++++ G L EA+ + + ++ + W +++
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQ 509
Query: 362 H--YNT--KLAELVMRNLLQLDVKVFGS 385
H Y T KL + + L+ D F S
Sbjct: 510 HGSYETAYKLFQEMQNEELEPDNITFAS 537
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 39/243 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ RD++SWN+MI+ +HG F E+ N ++ +A+ S +
Sbjct: 488 VFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEA 547
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H R+ LDV +G+ LI+MY++C GS Q
Sbjct: 548 LELGKQIHGRITESGLQLDVNLGNALINMYIRC----------------------GSLQD 585
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F + R+++SW +I + G K F+ F S+L C+
Sbjct: 586 ARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTS 645
Query: 298 SGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
S + +GK + Y T ++ SG + +A+++ D+MPS+ V W
Sbjct: 646 SACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSR-DIVSWNK 704
Query: 355 LLG 357
++
Sbjct: 705 IIA 707
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++MP RD++SWN++IS + GF + F E+ N GF + + Y + +A S +
Sbjct: 84 VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
LE G +HS+++ D V + L+ MY KCG
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCG 177
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/383 (20%), Positives = 144/383 (37%), Gaps = 72/383 (18%)
Query: 4 CGSLKSLPIARKIHAQ---LISTCLISSIF-----LQLIDDDYRVFCDIGPRYLFTYNTM 55
CG + S A K A ++ LI+++ ++ + YR+ D TY ++
Sbjct: 277 CGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSI 336
Query: 56 INGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115
+N C ++ +H + + SD I + I M+ +CG + A
Sbjct: 337 LNA---CSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE------- 386
Query: 116 PSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
+F MP+RDL+SWN +I+ R E + + ++ + G
Sbjct: 387 ---------------LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGR 431
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+ + SA A+ G +H ++ +GI+S+ +
Sbjct: 432 VTFLHLLSACANSSAYADGKMIHEDILR----------------------SGIKSNGHLA 469
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------- 286
AL+ MY GS +A FE R++ISW +I+ +Q G E F
Sbjct: 470 NALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE 529
Query: 287 ----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKL 339
F S+LSGC + + GK + + ++++ G L +A+ +
Sbjct: 530 PDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNV 589
Query: 340 IDEMPSKPTCVIWGALLGACCSH 362
+ + + W A++G C
Sbjct: 590 FHSLQHR-DVMSWTAMIGGCADQ 611
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 37/159 (23%)
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +H+++V D+F+ + LI+MY+KC S
Sbjct: 43 LPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCR----------------------SVLD 80
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCS 296
A F+ M RR++ISW LIS ++Q G +K F F ++S+L+ C
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQG-FKKKAFQLFEEMQNAGFIPNKITYISILTACY 139
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE 335
+ GK + + K Y LL + G G+
Sbjct: 140 SPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD 178
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 156/357 (43%), Gaps = 48/357 (13%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM++ C +G++ + H V + ++I+ + IDM++KCG + A F M
Sbjct: 326 TMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSM 385
Query: 114 LNPSLFCWK---FGIIR------LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
N ++ W G++R L +F +MPE +LVSWNTMI + + E +
Sbjct: 386 SNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLR 445
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
E+ N G + SA + L+ +++ +
Sbjct: 446 EMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEK--------------------- 484
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-R 283
N I +Q+G ALV M++ G A FE M +R++ +W I + G +
Sbjct: 485 -NDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIE 543
Query: 284 FF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLL 327
F F FV+LL+ SH G V +G+ F AM K ++ CMVDLL
Sbjct: 544 LFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLL 603
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
G +GLL EA L+ MP KP VIWG+ L AC H N + A + QL + G
Sbjct: 604 GRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVG 660
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 130/334 (38%), Gaps = 78/334 (23%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+ +HG+V K V D +A S I + CG VD F ML
Sbjct: 141 GVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEML---------------- 184
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
ER++VSW ++I+ + E +C F E+ G + + A SA A + D
Sbjct: 185 ------ERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKD 238
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G + + + + + V + L+DMY+KCG MYA
Sbjct: 239 LELGKKVCNLMTELGVKSNTLVVNALLDMYMKCG---------------DMYA------- 276
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVL--------------EKPRFFFFFVSLLSGCS 296
F+ S +N++ + ++S + Q G+ ++P S ++ C+
Sbjct: 277 VREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTML-STIAACA 335
Query: 297 HSGPVTKGKH-----YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
G ++ GK + + + + +D+ G A K+ D M +K T V
Sbjct: 336 QLGDLSVGKSSHAYVFRNGLERLDNISNAI--IDMYMKCGKREAACKVFDSMSNK-TVVT 392
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
W +L +A LV L+L +++FG
Sbjct: 393 WNSL-----------IAGLVRDGELELALRIFGE 415
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 144/269 (53%), Gaps = 33/269 (12%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++ + ++ WNTMI L + + + + + + GF ++ + A A + D
Sbjct: 68 LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G +H+ VV ++ +++M G+ ++ +G +LV MYA+ G+ +K
Sbjct: 128 LQLGVKIHTLVVKE------WIHKCIMEM-------GMVRNVFVGTSLVDMYAKCGNMEK 174
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----------------FVSLLSG 294
A F+ M ++++SW +I ++ G+ ++ F F+ LL G
Sbjct: 175 ARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCG 234
Query: 295 CSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+H+G V +G+ YF +M +F ++ CMVDLLG +GLL EA +LI MP + +
Sbjct: 235 CTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAI 294
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WGALLGAC H +T+LAEL ++ L++L+
Sbjct: 295 VWGALLGACRIHRDTQLAELALKQLIELE 323
>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 799
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 155/342 (45%), Gaps = 47/342 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +H K ++ ++ S IDM+ KC A++ F + ++ CW
Sbjct: 392 CATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCW 451
Query: 122 KF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
++ + +F+KMP R+L SWNT+IS ++ + L +F + G
Sbjct: 452 NSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQV 511
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ +++ A A++ L G H++ + + G+E SI
Sbjct: 512 PGEITFSSVLLACANLCSLVTGKMAHAKTIKL----------------------GMEESI 549
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
IG AL MYA+ G Q + F M RN ++W +I ++ G+ E+ F
Sbjct: 550 FIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGLAEESILLFEDMMAT 609
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEA 336
F++LL CSH G V + HYF M + + ++ CMVD+L +G L EA
Sbjct: 610 GMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEA 669
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ L+ + PSK W ALL AC ++ N ++ E + L +L
Sbjct: 670 EALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHEL 711
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 46/355 (12%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHG-LVKKFYFVSDESIAKSSIDMHV 98
V C + P + T+ MI C+ G +A+ + G +K +F S + S I +++
Sbjct: 241 VSCGVRPNGI-TFVCMIKA---CVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYL 296
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKF------------GIIRLLIMFQKMPERDLVSWNTM 146
+ G A F M + W G R+L MPER+ VSW T+
Sbjct: 297 RMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVL---DAMPERNEVSWGTL 353
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
I+ + G E + + ++ G + +++ SA A++ DL G +H+R + M
Sbjct: 354 IARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGS 413
Query: 207 SLDVFVGSGLIDMYLKC-GCNGI--------ESSIQIGKALVTMYAEGGSTQKADLAFEL 257
S +VFV S LIDMY KC C E +I +L + Y+ G +A F+
Sbjct: 414 STNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKK 473
Query: 258 MSRRNMISWMVLISAFSQ-AGVLEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
M RN+ SW +IS ++Q ++ R F F S+L C++ + G
Sbjct: 474 MPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTG 533
Query: 305 K--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
K H T + + + D+ SG L +K++ +MP + V W A++
Sbjct: 534 KMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERND-VTWTAMI 587
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 18/167 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASV 188
+F MPER +VS+ TM+ L + G E +EL+ S + S R +
Sbjct: 174 LFDGMPERSVVSYTTMVDALMKRGRVAEA----VELYEQCPSGSVAFFTATISGFVRNEL 229
Query: 189 YDLEWGPHLHSRVVHMEPSLDVF-------VGSGLIDMYLK-----CGCNGIESSIQIGK 236
+ G + P+ F VG+G + + N ESSI++
Sbjct: 230 HHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQN 289
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
+L+T+Y G A F+ M ++++SW L+ +S++G L+ R
Sbjct: 290 SLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 336
>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Cucumis sativus]
Length = 611
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 153/345 (44%), Gaps = 51/345 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +++ +H +F DE + S IDM+ KCG D A + F +L + W
Sbjct: 115 CSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSW 174
Query: 122 KFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I + +F + P R+L SW +IS L + G G + F E+ G
Sbjct: 175 TSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGID 234
Query: 173 L-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ ++ ++ A++ LE G +H V+ + G ES
Sbjct: 235 IVDPLVLSSVVGGCANLALLELGKQIHGLVIAL----------------------GFESC 272
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
+ I ALV MYA+ A F M R+++ISW +I +Q G E+ +
Sbjct: 273 LFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVL 332
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLL 333
FV LL CSH+G V++G+ F +M Y+ ++ C++DLL SG L
Sbjct: 333 SRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTT-DYSINPSLQHYTCLLDLLSRSGHL 391
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
EA+ L+D++P KP W +LL AC H N ++ + +L L
Sbjct: 392 DEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDL 436
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 135/346 (39%), Gaps = 55/346 (15%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
A LH + K F ++ + +D++ KCG + A L
Sbjct: 22 AGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQA----------------------LQ 59
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F +MP RD VSW ++++ + TL ++ H G ++A A +S+
Sbjct: 60 LFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLG 119
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIGK-----ALVT 240
L G +H+R + D V S LIDMY KCG + SI ++++
Sbjct: 120 YLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMIS 179
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG--------VLEKPRFFFFFV--- 289
YA G +A F RN+ SW LIS Q+G E R V
Sbjct: 180 GYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPL 239
Query: 290 ---SLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLLGEAKKLIDEM 343
S++ GC++ + GK + + +C F+ +VD+ + AK + M
Sbjct: 240 VLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRM 299
Query: 344 PSKPTCVIWGALLGACCSHYNTKLA-----ELVMRNLLQLDVKVFG 384
P K + W +++ H + A E+V+ + +V G
Sbjct: 300 PRKDV-ISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVG 344
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 152/350 (43%), Gaps = 68/350 (19%)
Query: 50 FTYNTMINGGVRCLCVG-NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
FTY +I R C+ I+ +H V KF F +D + I M+V +++ A
Sbjct: 95 FTYPPLI----RACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARR 150
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL--VSWNTMISILTRHGFGFETLCTFIEL 166
+F MP+RD VSWN MI+ + E F +
Sbjct: 151 ----------------------VFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRM 188
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
L + A+ SA + LE G +H + LD + + +IDMY KCGC
Sbjct: 189 RLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGC- 247
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+KA F + ++ + SW +I + G E F
Sbjct: 248 ---------------------LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELF 286
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGL 329
FV++LS C+HSG V +GKHYF M + +F CMVDLLG
Sbjct: 287 KEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGR 346
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+GLL EA+KLI+EMP P + GAL+GAC H NT+L E + + +++L+
Sbjct: 347 AGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 396
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 153/345 (44%), Gaps = 52/345 (15%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G + M HG V + F D + S IDM+VK ++ A++ F M N ++F W
Sbjct: 638 LGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSL 697
Query: 125 I------------IRLLIMFQKMP-ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+ +RLL +K + DLV+WN MIS G G E L F ++ G
Sbjct: 698 VSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGV 757
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+S A AS+ L+ G +H + DVFV + LIDM
Sbjct: 758 MPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDM------------ 805
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
Y++ S + A F + + + SW +I F+ G+ ++ F
Sbjct: 806 ----------YSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQK 855
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLG 334
F +LLS C +SG + +G YF +M ++ CMVDLLG +G L
Sbjct: 856 VGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLD 915
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA LI MP KP IWGALLG+C H N K AE +NL +L+
Sbjct: 916 EAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLE 960
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/441 (23%), Positives = 186/441 (42%), Gaps = 103/441 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL---------ISSIFLQLIDDDY--RVFCDIGPRYL 49
+K C S L + IH Q+I + + + +++ + +Y +VF +I R +
Sbjct: 198 LKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV 257
Query: 50 FTYNTMING--------GVR-----------------------CLCVGNIKMALHLHGLV 78
++ +I G G+R C + ++ + +H +
Sbjct: 258 VSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQI 317
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
K ++ + + +DM+ K ++ AE+ F R++ +R
Sbjct: 318 VKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLI----------------------KR 355
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
DL +W +++ + G G + + FI++ G + A++ S + + L+ G LH
Sbjct: 356 DLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLH 415
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
S + S D+FV S L+DMY KCGC + A++ F+ +
Sbjct: 416 SMAIKAGQSGDMFVASALVDMYAKCGC----------------------VEDAEVVFDGL 453
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK 305
R+ +SW +I +SQ G K F F+ +LS CSH G + +GK
Sbjct: 454 VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGK 513
Query: 306 HYFTAMAK---FTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+F +++K T T ++ CMVD+LG +G E + I+EM +IW +LGAC
Sbjct: 514 KHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKM 573
Query: 362 HYNTKLAELVMRNLLQLDVKV 382
H N + E L +L+ ++
Sbjct: 574 HGNIEFGERAAMKLFELEPEI 594
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 146/346 (42%), Gaps = 71/346 (20%)
Query: 42 CDIGPRYL-------FTYN--TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKS 92
CD GPR L F N T I+ C G++ +HG V K D + S
Sbjct: 172 CDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNS 231
Query: 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR 152
++++ KCG+ +YA C FG ++PERD+VSW +I+
Sbjct: 232 LVNVYAKCGSANYA-------------CKVFG---------EIPERDVVSWTALITGFVA 269
Query: 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
G+G L F ++ GF + + + + +S+ D++ G +H+++V + FV
Sbjct: 270 EGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFV 328
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
G+ L+D MYA+ + A+ F + +R++ +W V+++
Sbjct: 329 GTALVD----------------------MYAKNRFLEDAETIFNRLIKRDLFAWTVIVAG 366
Query: 273 FSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC- 318
++Q G EK + F F S LSGCS + G+ + K +
Sbjct: 367 YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGD 426
Query: 319 YFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
FV +VD+ G + +A+ + D + S+ T V W ++ H
Sbjct: 427 MFVASALVDMYAKCGCVEDAEVVFDGLVSRDT-VSWNTIICGYSQH 471
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 113/299 (37%), Gaps = 69/299 (23%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G+ +H V K+ F SD I+ + + M++K +V+ W+F
Sbjct: 103 LGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENG--------------WQF- 147
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT-----FIELWNHGFGLSSMLYA 179
F+ M +L S N ++S GF C I+L GF + +
Sbjct: 148 -------FKAMMIENLASRNNLLS-----GFCDTETCDQGPRILIQLLVEGFEPNMYTFI 195
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ AS DL G +H +V+ +GI + +LV
Sbjct: 196 SILKTCASKGDLNEGKAIHGQVIK----------------------SGINPDSHLWNSLV 233
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF------------FF 287
+YA+ GS A F + R+++SW LI+ F G R F +
Sbjct: 234 NVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYT 293
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY-FV--CMVDLLGLSGLLGEAKKLIDEM 343
F+S+L CS V GK + K + FV +VD+ + L +A+ + + +
Sbjct: 294 FISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL 352
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 37/241 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+ ++MP +D+ WN +S E + F + + L+ ++A+ SA AS+ D
Sbjct: 46 VLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGD 105
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+G +H+ V D+ + + + MY+K +E+ Q KA++
Sbjct: 106 NHYGESIHACVCKYGFESDILISNAFVTMYMK--TQSVENGWQFFKAMMIE--------- 154
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF------------FFFVSLLSGCSHS 298
L SR N++S Q PR + F+S+L C+
Sbjct: 155 -----NLASRNNLLSGFCDTETCDQG-----PRILIQLLVEGFEPNMYTFISILKTCASK 204
Query: 299 GPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G + +GK + K + + +V++ G A K+ E+P + V W AL
Sbjct: 205 GDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV-VSWTAL 263
Query: 356 L 356
+
Sbjct: 264 I 264
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 148/339 (43%), Gaps = 48/339 (14%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF--- 123
++ + + +HG V + D + + +DM+ +C + A F M S+ W
Sbjct: 138 DVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLS 197
Query: 124 GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
G+ RL +F +MPERD VSW MI E L F E+
Sbjct: 198 GLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFT 257
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
+ +A A + LE G + + +D FVG+ LIDM
Sbjct: 258 MVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDM------------------ 299
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---------- 287
Y++ GS ++A F+ M R+ +W +I + G E+ F
Sbjct: 300 ----YSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPD 355
Query: 288 ---FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLI 340
F+ +L+ C+H+G V KG+ +F +M + ++ C++DLLG +G + EA I
Sbjct: 356 EVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTI 415
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
D+MP P IWG LL AC H N+++ ELV LL+LD
Sbjct: 416 DQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELD 454
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 107/259 (41%), Gaps = 26/259 (10%)
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA-RASVYDLEWGPHLHS 199
V+WN +IS R G E+ +F+++ G + + Y + SA D+ G +H
Sbjct: 88 VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIE-SSIQIGKALVTMYAEGGSTQK 250
RVV D+ V + L+DMY +C +G++ S+ +L++ A G +
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG----VLEKPRFF---------FFFVSLLSGCSH 297
A F+ M R+ +SW +I + A LE R F VS+++ C+
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267
Query: 298 SGPVTKGKHYFTAMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G + G+ M++ FV ++D+ G + A + M +
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327
Query: 355 LLGACCSHYNTKLAELVMR 373
+LG + Y + E+ R
Sbjct: 328 ILGLAVNGYEEEAIEMFHR 346
>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 579
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 174/372 (46%), Gaps = 54/372 (14%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+ D R+F + + +Y M++G R G I A L + + VS +
Sbjct: 138 MKDAQRLFEAMPCPNVVSYTAMVDGYARV--EGGIGRARALFEAMPRRNSVSWVVM---- 191
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLVSWN 144
I+ V+ G + A F+RM + FC + + +FQ++ RDLVSWN
Sbjct: 192 INGLVENGLCEEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWN 251
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
+++ ++G G E L F ++ G + + + F A AS+ LE G H+ ++
Sbjct: 252 IIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIK- 310
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+G +S + + AL+T++++ G ++L F +S +++
Sbjct: 311 ---------------------HGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLV 349
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
SW +I+AF+Q G+ +K R +F F+SLLS C +G V + + F+ M
Sbjct: 350 SWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLM 409
Query: 312 AKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
+ ++ C+VD++ +G L A K+I+EMP K IWGA+L AC H N +L
Sbjct: 410 VDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSVHLNVEL 469
Query: 368 AELVMRNLLQLD 379
EL R +L LD
Sbjct: 470 GELAARRILNLD 481
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 10/161 (6%)
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
V H + +G +D K + ++++ Y + G Q++ F M
Sbjct: 29 VYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPL 88
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFFF---------FVSLLSGCSHSGPVTKGKHYFTAM 311
RN++SW +I+A Q L+ + + +++SG + G + + F AM
Sbjct: 89 RNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAM 148
Query: 312 AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
Y + + G +G A+ L + MP + V W
Sbjct: 149 PCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRR-NSVSW 188
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 59/365 (16%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
Y+ M+ G R C + +++ +H K ++ ++ + IDM+ K
Sbjct: 366 YSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCK 425
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGI---------IRLLIMFQKMPERDLVSWNTMISIL 150
C + A+ F + ++ CW I + +F+KMP R++ SWN++IS
Sbjct: 426 CKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGY 485
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
++ + L +F + G + +++ A AS+ LE G +H++++ +
Sbjct: 486 AQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKL------ 539
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
GI+ SI +G AL MYA+ G + F M +RN ++W +I
Sbjct: 540 ----------------GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMI 583
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317
++ G E+ F F+++L CSHSG V HYF M +
Sbjct: 584 QGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGIS 643
Query: 318 C---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374
++ CMVD+L +G L EA+ L+ ++ SK W ALL AC + N ++ E +
Sbjct: 644 PKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR 703
Query: 375 LLQLD 379
L +LD
Sbjct: 704 LQELD 708
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 161/378 (42%), Gaps = 52/378 (13%)
Query: 23 TCLISSIFL-QLIDDDYRVF-----CDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHG 76
T +I+ L +L D VF C + P + T+++ C+ G +A+ + G
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEI----TLVSVIKACIGAGEFDLAMSIVG 269
Query: 77 LVKKFYFVSDE-SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF------------ 123
L K + + S I ++++ G D A F M + W
Sbjct: 270 LAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLE 329
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
G R+L +MPER+ VSW T+++ + G E + + ++ G + +++
Sbjct: 330 GARRVL---DEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQI 234
A AS+ DL G +H++ + M S +VFV S LIDMY KC + + +I
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVC 446
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ-AGVLEKPRFF-------- 285
+L++ Y+ +A+ F+ M RN+ SW +IS ++Q ++ + F
Sbjct: 447 WNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506
Query: 286 ----FFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFV--CMVDLLGLSGLLGEAKK 338
F S+L C+ + GK + K FV + D+ SG L +K+
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKR 566
Query: 339 LIDEMPSKPTCVIWGALL 356
+ EMP K V W A++
Sbjct: 567 VFYEMP-KRNDVAWTAMI 583
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 49/338 (14%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI-- 125
+ +++HG V K D I S ID++ KCG D F +L ++ CW +
Sbjct: 332 LSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGG 391
Query: 126 -------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
+F+ +PE++ VSW T+I+ + + L F L G + +
Sbjct: 392 YSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTF 451
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
++ A AS+ L+ G ++H +++ + D+FVG+ L DMY K C I SS Q+
Sbjct: 452 SSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAK--CGDIGSSKQV---- 505
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
FE M +N ISW V+I +++G + F
Sbjct: 506 ----------------FERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLI 340
+S+L CSH G V KG YF +M K ++ C+VDLL SG L EA++ I
Sbjct: 550 ELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFI 609
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+P +P W ALL C + + K+AE + L QL
Sbjct: 610 RTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQL 647
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 34/319 (10%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ + + + GLV K F S++ S I + ++ G +D A F RM + W
Sbjct: 194 CGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSW 253
Query: 122 --------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+ G +R +F +MPER+ +SW+ MI+ ++ G+ E L F ++ GF
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK 313
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG----- 227
+ +A SA AS+ L G ++H V + DVF+GS LID+Y KCG
Sbjct: 314 PNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLV 373
Query: 228 ----IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
+E ++ ++V Y+ G ++ + FEL+ +N +SW +I+ + + EK
Sbjct: 374 FDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVL 433
Query: 284 FFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF--TYTCYF-VCMVDLL 327
F F S+L C+ + KG + + K Y + + D+
Sbjct: 434 EVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMY 493
Query: 328 GLSGLLGEAKKLIDEMPSK 346
G +G +K++ + MP K
Sbjct: 494 AKCGDIGSSKQVFERMPEK 512
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 19/238 (7%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW----- 121
N + + +VK+F SD ++ I +V+ G + A F M + W
Sbjct: 68 NCRKFAEIDQIVKEFDG-SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALIS 126
Query: 122 ---KFGIIRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
K+G + + F++ P +++VSW IS R+G FE L F L G + +
Sbjct: 127 GLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVT 186
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI--QIG 235
+ + A + D G + VV + V + LI + L+ G + + ++
Sbjct: 187 FTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME 246
Query: 236 K-------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
K A++ Y E G ++A F+ M RN ISW +I+ +SQ+G E+ F
Sbjct: 247 KRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLF 304
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ +++HG + K D + + DM+ KCG + ++
Sbjct: 458 CASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQ------------- 504
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
+F++MPE++ +SW MI L GF E+L F E+
Sbjct: 505 ---------VFERMPEKNEISWTVMIQGLAESGFAVESLILFEEM 540
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 80/223 (35%), Gaps = 61/223 (27%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----------GCNGIESSIQIGKALVTMY 242
G LH+ ++ S ++ L+ +YL C +G S + + +++ Y
Sbjct: 40 GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDG--SDLVVSNCMISAY 97
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------- 286
+ G+ +A L F+ M RN +SW LIS + G +E+ ++F
Sbjct: 98 VQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAIS 157
Query: 287 ----------------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC 318
F S++ C G G + K +
Sbjct: 158 GFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEH 217
Query: 319 YFVCMVDLLGLSGLLGE---AKKLIDEMPSKPTCVIWGALLGA 358
Y L+ LS +GE A+++ D M K V W A+L A
Sbjct: 218 YLSVSNSLITLSLRMGEIDLARRVFDRM-EKRDVVSWTAILDA 259
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 137/299 (45%), Gaps = 54/299 (18%)
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
+Y ES F+ +L+C +F + E L SWN +IS L++ G + + F
Sbjct: 132 EYCESGFI-----NLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVF 186
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS--LDVFVGSGLIDMYL 221
+++ HGF + + A S+ DL LH V + + + + + LIDMY
Sbjct: 187 VDMKRHGFEPDGITMVSVMCACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYG 246
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL---MSRRNMISWMVLISAFSQAGV 278
KCG + DLA+E+ M RN+ SW +I ++ G
Sbjct: 247 KCG-------------------------RMDLAYEVFATMEDRNVSSWTSMIVGYAMHGH 281
Query: 279 LE--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYF 320
+ KP + F+ +LS C H G V +G+ YF M ++
Sbjct: 282 AKEALGCFHCMRESGVKPN-YVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHY 340
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
CMVDLLG +GL +A+++++EMP KP V+WG L+GAC H N +AE V NL L+
Sbjct: 341 GCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMAEWVAENLQALE 399
>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
Length = 950
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 172/380 (45%), Gaps = 61/380 (16%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D+ +F ++ R + T+ TMI G G K + +K + V E S
Sbjct: 188 VDEAREIFDEMRERNVITWTTMITG------YGQNKRV----DVARKLFEVMPEKTEVSW 237
Query: 94 IDM---HVKCGAVDYAESAFLRM-LNPSLFCWKF--------GIIRLLIMFQKMPERDLV 141
M + G ++ AE F M + P + C I++ +F +M +RD
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNA 297
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
+W MI R GF E L F ++ G S + S A++ L++G +H+ +
Sbjct: 298 TWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
V + DV+V S L+ MY+KCG LV KA L F+ +
Sbjct: 358 VRCQFDGDVYVASVLMTMYVKCG------------ELV----------KAKLVFDRFPSK 395
Query: 262 NMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYF 308
++I W +IS ++ G+ E+ F +++L+ CS+ G + +G F
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIF 455
Query: 309 TAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
+M +KF T ++ C VD+LG +G + +A +LI+ M KP +WGALLGAC +H
Sbjct: 456 ESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSR 515
Query: 365 TKLAELVMRNLLQLDVKVFG 384
LAE+ + L +++ + G
Sbjct: 516 LDLAEVAAKKLFEIEPENAG 535
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 90/245 (36%), Gaps = 57/245 (23%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-------WNHGFGLSSMLYATAFS 183
+F+ MPER++VSW M+ + G E F + W FG ++
Sbjct: 101 VFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFG--GLIDGGRID 158
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
+YD M P DV + +I +
Sbjct: 159 DARKLYD-------------MMPGKDVVASTNMIGGLCR--------------------- 184
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSG 294
G +A F+ M RN+I+W +I+ + Q ++ R F + S+L G
Sbjct: 185 -EGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLG 243
Query: 295 CSHSGPVTKGKHYFTAMA-KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ SG + + +F M K C M+ LG G + +A+++ D+M + W
Sbjct: 244 YTLSGRIEDAEEFFEVMPMKPVIACN--AMIVALGEVGEIVKARRVFDQMEDRDNAT-WR 300
Query: 354 ALLGA 358
++ A
Sbjct: 301 GMIKA 305
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------F 287
++V+ Y G ++A F+ M RN++SW L+S + + ++E+ R F
Sbjct: 53 SIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVS 112
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMA---KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ +++ G G V + + F M + ++T F ++D G + +A+KL D MP
Sbjct: 113 WTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLID----GGRIDDARKLYDMMP 168
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
K V ++G C A + + + +V
Sbjct: 169 GK-DVVASTNMIGGLCREGRVDEAREIFDEMRERNV 203
>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
Length = 669
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 177/412 (42%), Gaps = 74/412 (17%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLF 50
K+C + L + R+IH+ L ++F+ DD Y++F ++ R +
Sbjct: 20 KSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVV 79
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
++N MI+G GL + V E +A ++C D A
Sbjct: 80 SWNAMISGFAHA-------------GLFGRAMDVFRELVA-------LQCPKPDAGTMAS 119
Query: 111 LRMLNPSLFCWKFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ PS+ + I LL +F +M + L+SWN M+++ T + E + F+ +
Sbjct: 120 IL---PSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKD 176
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ AT + V L G +H + + + + L+DMY CGC
Sbjct: 177 GIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGC---- 232
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
++A F+ M R+++SW +ISA+ + G + F
Sbjct: 233 ------------------LKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKM 274
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGL 332
FV++L+ CSH+G + GKHYF +M + ++ CMVDLLG +G
Sbjct: 275 CGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGC 334
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+ EA I MP KP +WGALLGAC H N + L +LL+L K G
Sbjct: 335 IREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTG 386
>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
Length = 756
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 172/396 (43%), Gaps = 72/396 (18%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALH-------------LHGLVKK 80
++ Y +F ++ + ++ TM++G VR + K L +HG +K
Sbjct: 276 VEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKS 335
Query: 81 FYF-----------VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW-------- 121
V D + I +V+CG +D A F +M N + W
Sbjct: 336 NLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCA 395
Query: 122 KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ G IR +F+KM R+ VSWN++IS ++G E L F+ + YA
Sbjct: 396 QGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYAC 455
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
SA A++ L+ G HS + V +G I S G AL++
Sbjct: 456 CLSASANLATLQIGRQFHS----------LLVRTGFI------------SDSSPGNALIS 493
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
YA+ G +A F+ M ++++SW LI ++ G + F
Sbjct: 494 AYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEIT 553
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
V +LS CSH+G + +G H+F +M K ++ CMVDLLG +G L EA +L+ M
Sbjct: 554 LVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGM 613
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+P +WGALLGAC H N ++A L L +L+
Sbjct: 614 QIQPNAGVWGALLGACRVHKNHEIAWLAAEKLFELE 649
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFV 289
+T A G A FE M RRN++S+ ++SA + G L + R F +
Sbjct: 18 LTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPVSWN 77
Query: 290 SLLSGCSHSGPVTKGKHYFTAMA---KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+++ CS G V + F AM ++++T C V +G L A++L+D MP +
Sbjct: 78 TMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYV----RAGELTLARELLDRMPGE 133
Query: 347 PTCVIWGALLGACCSHYNTKLA 368
C + YNT ++
Sbjct: 134 K-----------CAACYNTMIS 144
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------F 287
A+V+ A G +A F+ M RRN +SW ++ A SQ G +E R F +
Sbjct: 46 NAMVSALAHHGRLAEARRLFDEMPRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEY 105
Query: 288 FVSLLSGC-SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+++ C +G +T + M + M+ +G +A L+ EMP+
Sbjct: 106 SWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPA- 164
Query: 347 PTCVIWGALLG 357
P V W ++LG
Sbjct: 165 PDIVSWNSVLG 175
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 130/335 (38%), Gaps = 52/335 (15%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSID--- 95
R+F ++ R + +YN M++ AL HG + + + DE ++ +
Sbjct: 32 RLFEEMPRRNVVSYNAMVS-------------ALAHHGRLAEARRLFDEMPRRNPVSWNT 78
Query: 96 MHVKC---GAVDYAESAFLRMLNPSLFCW--------KFGIIRLLI-MFQKMP-ERDLVS 142
M V C G V+ A F M + + W + G + L + +MP E+
Sbjct: 79 MMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCAAC 138
Query: 143 WNTMISILTRHGFGFETLCTFIEL-------WNHGFGLSSMLYATAFSARASVYDLEWGP 195
+NTMIS ++G + + E+ WN G ++ S +D
Sbjct: 139 YNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLG--GLIRNEEISRSVQFFD----E 192
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+V L+ +V +G +D+ ++ LV Y + G +A F
Sbjct: 193 MPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELF 252
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---------FVSLLSGCSHSGPVTKGKH 306
+ M RN+++W VL+S + Q +E F + +++SG SG + + K
Sbjct: 253 DRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKD 312
Query: 307 YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLID 341
+ M M L S L+ +A++L D
Sbjct: 313 VLSKMPSDNVGAKTALMHGYLK-SNLIDDARQLFD 346
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 111/420 (26%), Positives = 184/420 (43%), Gaps = 69/420 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+K+CG + +L ++H LI + F+ LID D Y++FC++ R +
Sbjct: 206 LKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNV 265
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+ +MING + ++ A L L + D + + +++ G + A
Sbjct: 266 VAWTSMING---YILSADLVSARRLFDLAPE----RDVVLWNIMVSGYIEGGDMVEARKL 318
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M N + W + L +F++MPER++ SWN +I +G FE L
Sbjct: 319 FXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVL 378
Query: 161 CTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+F + + + T SA A + L+ G +H V+ E S
Sbjct: 379 GSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH---VYAESS------------ 423
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA------- 272
G++ ++ +G AL+ MYA+ G + A F M +++ISW LI
Sbjct: 424 -------GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRG 476
Query: 273 -------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFV 321
F +KP F + +L C+H G V G YF +MA ++
Sbjct: 477 ADALNLFFQMKNAGQKPDGITF-IGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYG 535
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
CMVD+L +G L +A + +MP + VIW LLGAC + N +LAEL ++ L++L+ K
Sbjct: 536 CMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK 595
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 157/345 (45%), Gaps = 60/345 (17%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM+ C + ++ +HGL+ K F SD + + IDM+ KCG++ AE F
Sbjct: 533 TMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLF--- 589
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
N + F +D V+WN +I+ ++G E + +F ++ F
Sbjct: 590 -NKTDFT-----------------KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHP 631
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+S+ + + A A + G H+ ++ M G S+
Sbjct: 632 NSVTFVSVLPAAAYLAAFREGMAFHACIIQM----------------------GFLSNTL 669
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------ 287
+G +L+ MYA+ G ++ F M ++ +SW ++S ++ G ++ F
Sbjct: 670 VGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQ 729
Query: 288 -------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEA 336
FVS+LS C H+G V +G+ F +M+ + ++ CMVDLLG +GL E
Sbjct: 730 VQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDET 789
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
I MP +P +WGALLG+C H N KL E+ + +L++L+ +
Sbjct: 790 LGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPR 834
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 120/309 (38%), Gaps = 63/309 (20%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+ NI++ +HG V + F S +++ ID++ KCG VD A
Sbjct: 243 LSNIELCRSIHGYVFRRDFSS--AVSNGLIDLYSKCGDVDVARR---------------- 284
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F +M ++D VSW TM++ +G E L F ++ ++ + +AF A
Sbjct: 285 ------VFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLA 338
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A DLE G +H + D+ V + L+ MY KC
Sbjct: 339 AAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC--------------------- 377
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
G T+KA F + R++++W +I+A Q G E+ F +S+
Sbjct: 378 -GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436
Query: 292 LSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
L C+ + GK H FT A +V + G A + M S+
Sbjct: 437 LPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-D 495
Query: 349 CVIWGALLG 357
V W +L+
Sbjct: 496 IVTWNSLIN 504
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 121/318 (38%), Gaps = 60/318 (18%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+++ +HG + SD +A + M+ KCG + A+
Sbjct: 344 DLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQ------------------ 385
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F + RDLV+W+ +I+ L + G+ E L F E+ N + + + A A
Sbjct: 386 ----LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ L+ G +H V + ++S + G ALV+MYA+ G
Sbjct: 442 DLSLLKLGKSIHCFTVKAD----------------------MDSDLSTGTALVSMYAKCG 479
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLS 293
A F MS R++++W LI+ ++Q G F+ V ++
Sbjct: 480 FFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVP 539
Query: 294 GCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+ + +G H F C+ ++D+ G L A+ L ++ V
Sbjct: 540 ACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599
Query: 351 IWGALLGACCSHYNTKLA 368
W ++ A + + K A
Sbjct: 600 TWNVIIAAYMQNGHAKEA 617
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 22/146 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F P + WN+MI TR E L + + G + A +
Sbjct: 85 VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALN 144
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G H + DVF+G+GL+DMY K G ++
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKM----------------------GDLKR 182
Query: 251 ADLAFELMSRRNMISWMVLISAFSQA 276
A F+ M +R++++W +I+ SQ+
Sbjct: 183 AREVFDKMPKRDVVAWNAMIAGLSQS 208
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 55/233 (23%)
Query: 47 RYLFTYNTMINGGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD 104
+Y FT+ V C G N++ + HG + + D I +DM+ K G +
Sbjct: 129 KYTFTF-------VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLK 181
Query: 105 YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
A +F KMP+RD+V+WN MI+ L++ E + F
Sbjct: 182 RARE----------------------VFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFR 219
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
+ G SS+ F + ++E +H V + S V +GLID+Y KC
Sbjct: 220 SMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFS--SAVSNGLIDLYSKC- 276
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
G A F+ M ++ +SW +++ ++ G
Sbjct: 277 ---------------------GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNG 308
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 59/365 (16%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
Y+ M+ G R C + +++ +H K ++ ++ + IDM+ K
Sbjct: 366 YSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCK 425
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGI---------IRLLIMFQKMPERDLVSWNTMISIL 150
C + A+ F + ++ CW I + +F+KMP R++ SWN++IS
Sbjct: 426 CKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGY 485
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
++ + L +F + G + +++ A AS+ LE G +H++++ +
Sbjct: 486 AQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKL------ 539
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
GI+ SI +G AL MYA+ G + F M +RN ++W +I
Sbjct: 540 ----------------GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMI 583
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317
++ G E+ F F+++L CSHSG V HYF M +
Sbjct: 584 QGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGIS 643
Query: 318 C---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374
++ CMVD+L +G L EA+ L+ ++ SK W ALL AC + N ++ E +
Sbjct: 644 PKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR 703
Query: 375 LLQLD 379
L +LD
Sbjct: 704 LQELD 708
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 161/378 (42%), Gaps = 52/378 (13%)
Query: 23 TCLISSIFL-QLIDDDYRVF-----CDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHG 76
T +I+ L +L D VF C + P + T+++ C+ G +A+ + G
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEI----TLVSVIKACIGAGEFDLAMSIVG 269
Query: 77 LVKKFYFVSDE-SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF------------ 123
L K + + S I ++++ G D A F M + W
Sbjct: 270 LAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLE 329
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
G R+L +MPER+ VSW T+++ + G E + + ++ G + +++
Sbjct: 330 GARRVL---DEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQI 234
A AS+ DL G +H++ + M S +VFV S LIDMY KC + + +I
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVC 446
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ-AGVLEKPRFF-------- 285
+L++ Y+ +A+ F+ M RN+ SW +IS ++Q ++ + F
Sbjct: 447 WNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506
Query: 286 ----FFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFV--CMVDLLGLSGLLGEAKK 338
F S+L C+ + GK + K FV + D+ SG L +K+
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKR 566
Query: 339 LIDEMPSKPTCVIWGALL 356
+ EMP K V W A++
Sbjct: 567 VFYEMP-KRNDVAWTAMI 583
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 154/348 (44%), Gaps = 54/348 (15%)
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
+R L G +++HG V K D I S ID++ KCG D F +L +
Sbjct: 327 ASLRALSAG-----INIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381
Query: 118 LFCWKFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+ CW + +F+ +PE++ VSW T+I+ + + L F L
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
G + +++ A AS+ L+ G ++H +++ + D+FVG+ L DMY K C I
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAK--CGDI 499
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-- 286
SS Q+ FE M +N ISW V+I +++G + F
Sbjct: 500 GSSKQV--------------------FERMPEKNEISWTVMIQGLAESGFAVESLILFEE 539
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLS 330
+S+L CSH G V KG YF +M K ++ C+VDLL S
Sbjct: 540 MERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRS 599
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
G L EA++ I +P +P W ALL C + + K+AE + L QL
Sbjct: 600 GRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQL 647
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 34/319 (10%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ + + + GLV K F S++ S I + ++ G +D A F RM + W
Sbjct: 194 CGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSW 253
Query: 122 --------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+ G +R +F +MPER+ +SW+ MI+ ++ G+ E L F ++ GF
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK 313
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG----- 227
+ +A SA AS+ L G ++H V + DVF+GS LID+Y KCG
Sbjct: 314 PNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLV 373
Query: 228 ----IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
+E ++ ++V Y+ G ++ + FEL+ +N +SW +I+ + + EK
Sbjct: 374 FDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVL 433
Query: 284 FFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF--TYTCYF-VCMVDLL 327
F F S+L C+ + KG + + K Y + + D+
Sbjct: 434 EVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMY 493
Query: 328 GLSGLLGEAKKLIDEMPSK 346
G +G +K++ + MP K
Sbjct: 494 AKCGDIGSSKQVFERMPEK 512
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 19/233 (8%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW----- 121
N + + +VK+F SD ++ I +V+ G + A F M + W
Sbjct: 68 NCRKFAEIDQIVKEFDG-SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALIS 126
Query: 122 ---KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
K+G + + F++ P +++VSW IS R+G FE L F L G + +
Sbjct: 127 GLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVT 186
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI--QIG 235
+ + A + D G + VV + V + LI + L+ G + + ++
Sbjct: 187 FTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME 246
Query: 236 K-------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
K A++ Y E G ++A F+ M RN ISW +I+ +SQ+G E+
Sbjct: 247 KRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEE 299
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC-----------NGIESSIQIGKALVTMY 242
G LH+ ++ S ++ L+ +YL C +G S + + +++ Y
Sbjct: 40 GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDG--SDLVVSNCMISAY 97
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+ G+ +A L F+ M RN +SW LIS + G +E+ ++F
Sbjct: 98 VQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYF 141
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFFF--------- 286
AL++ + G +++ FE +N++SW IS F + G+ E + FF
Sbjct: 123 ALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRP 182
Query: 287 ---FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE---AKKLI 340
F S++ C G G + K + Y L+ LS +GE A+++
Sbjct: 183 NDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVF 242
Query: 341 DEMPSKPTCVIWGALLGA 358
D M K V W A+L A
Sbjct: 243 DRM-EKRDVVSWTAILDA 259
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 184/410 (44%), Gaps = 85/410 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC + ++ + + +H + S +F+Q ++ + +VF ++ R
Sbjct: 145 VKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDA 204
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA--KSSIDMHVKCGAVDYAE 107
F + M++ R VG++ A L F + + + A + ID + + G V+ AE
Sbjct: 205 FAWTAMLSALAR---VGDMDSARKL------FEEMPERNTATWNTMIDGYTRLGNVESAE 255
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
++F +MP +D++SW TMI+ +++ + L + E+
Sbjct: 256 ----------------------LLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMR 293
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+G + +T SA A + LE G +H V+ +LDV++GS L+DMY KC
Sbjct: 294 LNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKC---- 349
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
GS + L F ++ +N+ W +I + G EK F
Sbjct: 350 ------------------GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFA 391
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGL 329
F+S+LS C+H+G V +G+ F +M + Y ++ CMVD+L
Sbjct: 392 IMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTR-DYDIRPDIRHYGCMVDMLSK 450
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
SG L EA +LI M +P +IWGALL C H N ++AE + L+ L+
Sbjct: 451 SGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILE 500
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 163/359 (45%), Gaps = 57/359 (15%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDES----IAKSSIDMHVKCGAVDYA 106
TY T+I+ C VG+ +M +H + K + S ++ + I ++ K VD A
Sbjct: 291 TYTTIISA---CANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEA 347
Query: 107 ESAFLRMLNPSLFCWKF---GIIRLLIM------FQKMPERDLVSWNTMISILTRHGFGF 157
F M ++ W G + M F++MP ++L++ MIS L ++GFG
Sbjct: 348 RKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGD 407
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E L F ++ GF +A A +A + + LE G LH+++VH+ + VG+ +I
Sbjct: 408 EGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMI 467
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
MY KCG + A+ F M +++SW +I+A Q G
Sbjct: 468 SMYAKCGV----------------------VEAAESVFVTMPSVDLVSWNSMIAALGQHG 505
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----Y 319
K F F+++L+ CSH+G V KG+HYF +M + +Y +
Sbjct: 506 HGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE-SYGITPCEDH 564
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ MVDL +G+ A+ +ID MPSKP +W ALL C H N L L +L
Sbjct: 565 YARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKL 623
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/393 (22%), Positives = 155/393 (39%), Gaps = 62/393 (15%)
Query: 28 SIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLH-GLVKKFYFVSD 86
+F + DD+R P FT+ ++++ V L VGN + +H +VK
Sbjct: 133 ELFRAMRRDDFR------PDD-FTFTSVLSALV--LFVGNEQQCGQMHCAVVKTGMGCVS 183
Query: 87 ESIAKSSIDMHVK--------CGAVDYAESAFLRMLNPSLFCWKF---GIIR------LL 129
S+ + + ++VK C A+ A F M W G +R
Sbjct: 184 SSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
+F+ M E +WN MIS G E L ++ G + Y T SA A+V
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG 303
Query: 190 DLEWGPHLHSRVVHMEPSLD----VFVGSGLIDMYLKCGCNGIESSIQI----------- 234
+ G +H+ ++ E + + + V + LI +Y C N ++ + +I
Sbjct: 304 SFQMGKQMHAYILKNELNPNHSFCLSVSNALITLY--CKNNKVDEARKIFYAMPVRNIIT 361
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF-------- 285
A+++ Y G ++A FE M +N+++ V+IS +Q G E + F
Sbjct: 362 WNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGF 421
Query: 286 ----FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKK 338
F F L+ CS G + G+ + Y M+ + G++ A+
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAES 481
Query: 339 LIDEMPSKPTCVIWGALLGACCSH-YNTKLAEL 370
+ MPS V W +++ A H + K EL
Sbjct: 482 VFVTMPS-VDLVSWNSMIAALGQHGHGVKAIEL 513
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 184/449 (40%), Gaps = 108/449 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID--------DDYRVFCDIGP---R 47
+KAC L L R+IH+ + + +F+Q LI + R D+ P R
Sbjct: 134 LKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVR 193
Query: 48 YLFTYNTMINGGVR---------------------------------CLCVGNIKMALHL 74
+ ++N+MI+G ++ C +G + + +
Sbjct: 194 DVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKI 253
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
HGL FV D + S IDM+ KCG ++ A +F +
Sbjct: 254 HGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARK----------------------VFDR 291
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+P R+ V W +MI+ + E + F E+ GF + A SA WG
Sbjct: 292 IPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACG-----HWG 346
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
R +H L C N IE + AL+ MY++ G QKA
Sbjct: 347 ALAQGRWIH-----------------LYCERNSIEMDLNARNALIGMYSKCGDIQKALEI 389
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGP 300
F +++ ++ SW +IS + G +K F F+ +L C+H G
Sbjct: 390 FHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGF 449
Query: 301 VTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V KG +YF AM + ++ CMVDLLG + LL EA+K I +P +P VIW +LL
Sbjct: 450 VDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLL 509
Query: 357 GACCSHYNTKLAELVMRNLLQLDVKVFGS 385
AC +H N +LAE + + +L+ + G+
Sbjct: 510 FACRNHGNIELAEFAAKQIEELEPRRCGA 538
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 42/247 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++ + ++ SWN M +R F ET+ + + +G + + A A +
Sbjct: 83 LFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSL 142
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +HS + + LDVFV + LI + C G+ +
Sbjct: 143 LHKGREIHSSTLKLGVHLDVFVQNALISAFSSC----------------------GAVEA 180
Query: 251 ADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSG 294
A F+++ R+++SW +IS + Q+ E F+ VS LS
Sbjct: 181 ARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSV 240
Query: 295 CSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C G + GK H + F + ++D+ G + +A+K+ D +P + T V
Sbjct: 241 CGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNT-VC 299
Query: 352 WGALLGA 358
W +++
Sbjct: 300 WTSMIAG 306
>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
Length = 841
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 172/396 (43%), Gaps = 72/396 (18%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALH-------------LHGLVKK 80
++ Y +F ++ + ++ TM++G VR + K L +HG +K
Sbjct: 276 VEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKS 335
Query: 81 FYF-----------VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW-------- 121
V D + I +V+CG +D A F +M N + W
Sbjct: 336 NLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCA 395
Query: 122 KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ G IR +F+KM R+ VSWN++IS ++G E L F+ + YA
Sbjct: 396 QGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYAC 455
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
SA A++ L+ G HS + V +G I S G AL++
Sbjct: 456 CLSASANLATLQIGRQFHS----------LLVRTGFI------------SDSSPGNALIS 493
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
YA+ G +A F+ M ++++SW LI ++ G + F
Sbjct: 494 AYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEIT 553
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
V +LS CSH+G + +G H+F +M K ++ CMVDLLG +G L EA +L+ M
Sbjct: 554 LVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGM 613
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+P +WGALLGAC H N ++A L L +L+
Sbjct: 614 QIQPNAGVWGALLGACRVHKNHEIAWLAAEKLFELE 649
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFV 289
+T A G A FE M RRN++S+ ++SA + G L + R F +
Sbjct: 18 LTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPVSWN 77
Query: 290 SLLSGCSHSGPVTKGKHYFTAMA---KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+++ CS G V + F AM ++++T C V +G L A++L+D MP +
Sbjct: 78 TMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYV----RAGELTLARELLDRMPGE 133
Query: 347 PTCVIWGALLGACCSHYNTKLA 368
C + YNT ++
Sbjct: 134 -----------KCAACYNTMIS 144
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------F 287
A+V+ A G +A F+ M RRN +SW ++ A SQ G +E R F +
Sbjct: 46 NAMVSALAHHGRLAEARRLFDEMPRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEY 105
Query: 288 FVSLLSGC-SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+++ C +G +T + M + M+ +G +A L+ EMP+
Sbjct: 106 SWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPA- 164
Query: 347 PTCVIWGALLG 357
P V W ++LG
Sbjct: 165 PDIVSWNSVLG 175
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 130/335 (38%), Gaps = 52/335 (15%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSID--- 95
R+F ++ R + +YN M++ AL HG + + + DE ++ +
Sbjct: 32 RLFEEMPRRNVVSYNAMVS-------------ALAHHGRLAEARRLFDEMPRRNPVSWNT 78
Query: 96 MHVKC---GAVDYAESAFLRMLNPSLFCW--------KFGIIRLLI-MFQKMP-ERDLVS 142
M V C G V+ A F M + + W + G + L + +MP E+
Sbjct: 79 MMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCAAC 138
Query: 143 WNTMISILTRHGFGFETLCTFIEL-------WNHGFGLSSMLYATAFSARASVYDLEWGP 195
+NTMIS ++G + + E+ WN G ++ S +D
Sbjct: 139 YNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLG--GLIRNEEISRSVQFFD----E 192
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+V L+ +V +G +D+ ++ LV Y + G +A F
Sbjct: 193 MPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELF 252
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---------FVSLLSGCSHSGPVTKGKH 306
+ M RN+++W VL+S + Q +E F + +++SG SG + + K
Sbjct: 253 DRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKD 312
Query: 307 YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLID 341
+ M M L S L+ +A++L D
Sbjct: 313 VLSKMPSDNVGAKTALMHGYLK-SNLIDDARQLFD 346
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 59/365 (16%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
Y+ M+ G R C + +++ +H K ++ ++ + IDM+ K
Sbjct: 366 YSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCK 425
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGI---------IRLLIMFQKMPERDLVSWNTMISIL 150
C + A+ F + ++ CW I + +F+KMP R++ SWN++IS
Sbjct: 426 CKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGY 485
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
++ + L +F + G + +++ A AS+ LE G +H++++ +
Sbjct: 486 AQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKL------ 539
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
GI+ SI +G AL MYA+ G + F M +RN ++W +I
Sbjct: 540 ----------------GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMI 583
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317
++ G E+ F F+++L CSHSG V HYF M +
Sbjct: 584 QGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGIS 643
Query: 318 C---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374
++ CMVD+L +G L EA+ L+ ++ SK W ALL AC + N ++ E +
Sbjct: 644 PKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR 703
Query: 375 LLQLD 379
L +LD
Sbjct: 704 LQELD 708
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 161/378 (42%), Gaps = 52/378 (13%)
Query: 23 TCLISSIFL-QLIDDDYRVF-----CDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHG 76
T +I+ L +L D VF C + P + T+++ C+ G +A+ + G
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEI----TLVSVIKACIGAGEFDLAMSIVG 269
Query: 77 LVKKFYFVSDE-SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF------------ 123
L K + + S I ++++ G D A F M + W
Sbjct: 270 LAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLE 329
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
G R+L +MPER+ VSW T+++ + G E + + ++ G + +++
Sbjct: 330 GARRVL---DEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQI 234
A AS+ DL G +H++ + M S +VFV S LIDMY KC + + +I
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVC 446
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ-AGVLEKPRFF-------- 285
+L++ Y+ +A+ F+ M RN+ SW +IS ++Q ++ + F
Sbjct: 447 WNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506
Query: 286 ----FFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFV--CMVDLLGLSGLLGEAKK 338
F S+L C+ + GK + K FV + D+ SG L +K+
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKR 566
Query: 339 LIDEMPSKPTCVIWGALL 356
+ EMP K V W A++
Sbjct: 567 VFYEMP-KRNDVAWTAMI 583
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 178/413 (43%), Gaps = 74/413 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+K+C + L + R+IH+ L ++F+ DD Y++F ++ R +
Sbjct: 129 LKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDV 188
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++N MI+G GL + V E +A ++C D A
Sbjct: 189 VSWNAMISGFAHA-------------GLFGRAMDVFRELVA-------LQCPKPDAGTMA 228
Query: 110 FLRMLNPSLFCWKFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+ PS+ + I LL +F +M + L+SWN M+++ T + E + F+ +
Sbjct: 229 SIL---PSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQK 285
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
G ++ AT + V L G +H + + + + L+DMY CGC
Sbjct: 286 DGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGC--- 342
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-- 286
++A F+ M R+++SW +ISA+ + G + F
Sbjct: 343 -------------------LKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEK 383
Query: 287 -----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSG 331
FV++L+ CSH+G + GKHYF +M + ++ CMVDLLG +G
Sbjct: 384 MCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAG 443
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+ EA I MP KP +WGALLGAC H N + L +LL+L K G
Sbjct: 444 CIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTG 496
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 24/145 (16%)
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG--LSSMLYATAFSARASVYDLEW 193
P+R V +N ++ LT + L F + G Y A + A+ L
Sbjct: 81 PDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVL 140
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +HS + +VFV I MY +C G A
Sbjct: 141 GRQIHSSTARLGLDGNVFVAHSAISMYARC----------------------GRPDDAYQ 178
Query: 254 AFELMSRRNMISWMVLISAFSQAGV 278
FE M R+++SW +IS F+ AG+
Sbjct: 179 MFEEMQYRDVVSWNAMISGFAHAGL 203
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 163/359 (45%), Gaps = 57/359 (15%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDES----IAKSSIDMHVKCGAVDYA 106
TY T+I+ C VG+ +M +H + K + S ++ + I ++ K VD A
Sbjct: 291 TYTTIISA---CANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEA 347
Query: 107 ESAFLRMLNPSLFCWKF---GIIRLLIM------FQKMPERDLVSWNTMISILTRHGFGF 157
F M ++ W G + M F++MP ++L++ MIS L ++GFG
Sbjct: 348 RKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGD 407
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E L F ++ GF +A A +A + + LE G LH+++VH+ + VG+ +I
Sbjct: 408 EGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMI 467
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
MY KCG + A+ F M +++SW +I+A Q G
Sbjct: 468 SMYAKCGV----------------------VEAAESVFVTMPSVDLVSWNSMIAALGQHG 505
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----Y 319
K F F+++L+ CSH+G V KG+HYF +M + +Y +
Sbjct: 506 HGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE-SYGITPCEDH 564
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ MVDL +G+ A+ +ID MPSKP +W ALL C H N L L +L
Sbjct: 565 YARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKL 623
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/393 (22%), Positives = 155/393 (39%), Gaps = 62/393 (15%)
Query: 28 SIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLH-GLVKKFYFVSD 86
+F + DD+R P FT+ ++++ V L VGN + +H +VK
Sbjct: 133 ELFRAMRRDDFR------PDD-FTFTSVLSALV--LFVGNEQQCGQMHCAVVKTGMGCVS 183
Query: 87 ESIAKSSIDMHVK--------CGAVDYAESAFLRMLNPSLFCWKF---GIIR------LL 129
S+ + + ++VK C A+ A F M W G +R
Sbjct: 184 SSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
+F+ M E +WN MIS G E L ++ G + Y T SA A+V
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG 303
Query: 190 DLEWGPHLHSRVVHMEPSLD----VFVGSGLIDMYLKCGCNGIESSIQI----------- 234
+ G +H+ ++ E + + + V + LI +Y C N ++ + +I
Sbjct: 304 SFQMGKQVHAYILKNELNPNHSFCLSVSNALITLY--CKNNKVDEARKIFYAMPVRNIIT 361
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF-------- 285
A+++ Y G ++A FE M +N+++ V+IS +Q G E + F
Sbjct: 362 WNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGF 421
Query: 286 ----FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKK 338
F F L+ CS G + G+ + Y M+ + G++ A+
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAES 481
Query: 339 LIDEMPSKPTCVIWGALLGACCSH-YNTKLAEL 370
+ MPS V W +++ A H + K EL
Sbjct: 482 VFVTMPS-VDLVSWNSMIAALGQHGHGVKAIEL 513
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 183/441 (41%), Gaps = 108/441 (24%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLF 50
KA GSL+S + +++HA + IS +F+ L ++ ++F ++ R +
Sbjct: 116 KASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIA 175
Query: 51 TYNTMINGGV--------------------------------RCLCVGNIKMALHLHGLV 78
T+N ++ V C +++ LHG V
Sbjct: 176 TWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFV 235
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ F +D S+A ID + KC V +E I+F + +
Sbjct: 236 LQSGFEADVSVANGLIDFYGKCHQVGCSE----------------------IIFSGISKP 273
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+ VSW +MI ++ + F+ G + + ++ SA A + LE G +H
Sbjct: 274 NDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVH 333
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ V ++FVGS L+DMY KC GS + A+ AF+ M
Sbjct: 334 TLAVKACVVGNIFVGSALVDMYGKC----------------------GSIEDAERAFDEM 371
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFF---------------FFVSLLSGCSHSGPVTK 303
RN+++W +I ++ G + F FV +LS CS +G V
Sbjct: 372 PERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNV 431
Query: 304 GKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F +M + Y ++ C+VDLLG +G++ +A + I +MP +PT +WGALLGA
Sbjct: 432 GMEIFESM-RGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGA 490
Query: 359 CCSHYNTKLAELVMRNLLQLD 379
++L ++ NL +LD
Sbjct: 491 SKMFGKSELGKVAADNLFELD 511
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
P R +V+W +I+ ++G L F + + + AF A S+ G
Sbjct: 69 PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK 128
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+H+ V DVFVG DMY K G T++A F
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGL----------------------TEEARKMF 166
Query: 256 ELMSRRNMISWMVLIS 271
+ M RN+ +W +S
Sbjct: 167 DEMPERNIATWNAYLS 182
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 52/135 (38%), Gaps = 17/135 (12%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPR 283
LV MY++ A L L R++++W LI+ Q G +P
Sbjct: 48 LVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPN 107
Query: 284 FFFFFVSLLSGCSHSGP-VTKGKHYFTAMAKFTYTCYFVCMV-DLLGLSGLLGEAKKLID 341
F F + + S P V K H A + C D+ +GL EA+K+ D
Sbjct: 108 DFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFD 167
Query: 342 EMPSKPTCVIWGALL 356
EMP + W A L
Sbjct: 168 EMPER-NIATWNAYL 181
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 178/416 (42%), Gaps = 80/416 (19%)
Query: 19 QLIS-TCLISS-IFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHL-- 74
+LIS CL+ + ++ D ++F I R L ++NTMI+G + G++ A L
Sbjct: 187 ELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQ---DGDLSQARRLFE 243
Query: 75 -------------------HGLVKKFYFVSDESIAKSSIDMHV------KCGAVDYAESA 109
G++ + V DE K + +V + +D
Sbjct: 244 ESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGREL 303
Query: 110 FLRMLNPSLFCWKFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M P++ W I + +F MP+RD VSW +I+ ++G E +
Sbjct: 304 FEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAM 363
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
+E+ G L+ + A SA A + LE G +H +VV VG+ L+ MY
Sbjct: 364 NMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMY 423
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KCGC I+ + + F+ + ++++SW +++ +++ G
Sbjct: 424 CKCGC--IDEAYDV--------------------FQGVQHKDIVSWNTMLAGYARHGFGR 461
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCM 323
+ F V +LS CSH+G +G YF +M K + ++ CM
Sbjct: 462 QALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACM 521
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+DLLG +G L EA+ LI MP +P WGALLGA H N +L E + +++
Sbjct: 522 IDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKME 577
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 108/272 (39%), Gaps = 49/272 (18%)
Query: 93 SIDMHVKCGAVDYAESAF----LR-------MLNPSLFCWKFGIIRLLIMFQKMPERDLV 141
+I H++ G D A F LR M++ L KF + R L F KMP +DL
Sbjct: 39 AISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDL--FDKMPHKDLF 96
Query: 142 SWNTMISILTRHGFGFETLCTFIEL-------WNHGFGLSSMLYATAFSARASVYDLEWG 194
SWN M++ R+ + F + WN LS + + V+D
Sbjct: 97 SWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWN--AMLSGYVRSGHVDEARDVFDRM-- 152
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
PH +S + L +V SG ++ + + + + L+ Y + A
Sbjct: 153 PHKNS--ISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQL 210
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
F+ + R++ISW +IS ++Q G L + R F PV F
Sbjct: 211 FDQIPVRDLISWNTMISGYAQDGDLSQARRLF----------EESPVRD---------VF 251
Query: 315 TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
T+T V G+L EA+++ DEMP K
Sbjct: 252 TWTAMVYAYVQ----DGMLDEARRVFDEMPQK 279
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FF 288
++T YA + A + F+ M ++++SW ++S + ++G +++ R F +
Sbjct: 101 MLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISW 160
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LL+ SG + + + F + + + +C C++ +LG+A++L D++P +
Sbjct: 161 NGLLAAYVRSGRLEEARRLFESKSDWELISCN--CLMGGYVKRNMLGDARQLFDQIPVR- 217
Query: 348 TCVIWGALL 356
+ W ++
Sbjct: 218 DLISWNTMI 226
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/440 (24%), Positives = 188/440 (42%), Gaps = 106/440 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTC------LISSIFLQL------IDDDYRVFCDIGPRY 48
+K C L++L +IHA LI C + + + + ++ RVF ++ R
Sbjct: 131 LKVCSRLQALSEGEQIHA-LIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERN 189
Query: 49 LFTYNTMINGGVR--------------------------------CLCVGNIKMALHLHG 76
+ T+N+M G + C + ++++ ++
Sbjct: 190 VRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINR 249
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
V++ + ++ S +DM+ KCG VD A +F +M
Sbjct: 250 YVEEKGLKGNPTLITSLVDMYAKCGQVDTARR----------------------LFDQMD 287
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
RD+V+W+ MIS ++ E L F E+ + + + S+ A + LE G
Sbjct: 288 RRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKW 347
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H + L V +G+ L+D Y KCG +ESSI++ F
Sbjct: 348 VHFFIKKKRMKLTVTLGTALMDFYAKCG--SVESSIEV--------------------FG 385
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTK 303
M +N++SW VLI + G +K +F+ F+ +LS CSH+G V +
Sbjct: 386 KMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDE 445
Query: 304 GKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G+ F +M++ ++ CMVD+LG +GL+ EA + I MP +P VIW LL +C
Sbjct: 446 GRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASC 505
Query: 360 CSHYNTKLAELVMRNLLQLD 379
H N ++ E ++ L+ L+
Sbjct: 506 KVHKNVEIGEESLKQLIILE 525
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 39/242 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+++ E D ++N MI T E + F E+ + + + +
Sbjct: 80 IFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQA 139
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H+ + +KCG S + L+ MYA G +
Sbjct: 140 LSEGEQIHA-------------------LIMKCGFG---SHGFVKNTLIHMYANCGEVEV 177
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F+ MS RN+ +W + + ++++G E+ F VS+L+ C
Sbjct: 178 ARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGR 237
Query: 298 SGPVTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ G+ Y +VD+ G + A++L D+M + V W A
Sbjct: 238 LADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRR-DVVAWSA 296
Query: 355 LL 356
++
Sbjct: 297 MI 298
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 149/317 (47%), Gaps = 48/317 (15%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERDLVSWN 144
ID ++KCG V+ A+ F M + ++ W K G+I +F +M E++ +SW+
Sbjct: 203 IDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWS 262
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
MI + G+ E L F + + ++ +A A++ L+ G +H+ V +
Sbjct: 263 AMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNN 322
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
S D +G+ L+DMY KC G A FE M ++ +
Sbjct: 323 SNSFDAVLGTALVDMYAKC----------------------GRLDMAWDVFEKMEKKEVF 360
Query: 265 SWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAM 311
+W +I G E FF + +LS C+HSG V +G F +M
Sbjct: 361 TWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSM 420
Query: 312 AKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
+ ++ C+VDLLG +GLLGEA++++ MP +P+ +WGALLGAC H + +L
Sbjct: 421 EEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVEL 480
Query: 368 AELVMRNLLQLDVKVFG 384
E V + LL+L+ + G
Sbjct: 481 GERVGKILLELEPQNSG 497
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-----------GKALVTMYAEGGST 248
R++ + + DV + +ID YLKCG +E++ ++ +V+ A+ G
Sbjct: 186 RMLGEDGNSDVICFNAMIDGYLKCG--EVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMI 243
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSG 294
++A F M +N ISW +I + + G + +PR F S+L+
Sbjct: 244 EEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPR-KFVLSSVLAA 302
Query: 295 CSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C++ G + +G+ H + ++ +VD+ G L A + ++M K
Sbjct: 303 CANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEV-FT 361
Query: 352 WGALL 356
W A++
Sbjct: 362 WNAMI 366
>gi|302780855|ref|XP_002972202.1| hypothetical protein SELMODRAFT_96876 [Selaginella moellendorffii]
gi|300160501|gb|EFJ27119.1| hypothetical protein SELMODRAFT_96876 [Selaginella moellendorffii]
Length = 485
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 152/342 (44%), Gaps = 52/342 (15%)
Query: 62 CLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
C C G +++ +H V F + + + ++M+ KC +D A +AF R+ + +
Sbjct: 3 CSCSGLRDLEQGKSIHDRVAADGFDTQVFVGNALVNMYSKCRRLDLARAAFERIDSKDVV 62
Query: 120 CWKFGIIR-----------LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
W I +F +M R++VSW+ +I+ L HG G + + F +
Sbjct: 63 SWNSMIAAHSQLGGSDEALETAVFDRMERRNVVSWSGLIAALAEHGRGRDAIELFHRMDL 122
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
G + + + A AS + G H+RV GC G
Sbjct: 123 DGIQPNEVTLLSVLEACASTGAIAEGRRTHARV---------------------SGC-GF 160
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-- 286
E+ + ALV MY + G A F+ M+ RN++SW +++ ++ G E+ R F
Sbjct: 161 EAETNVANALVNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKA 220
Query: 287 -----------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSG 331
FVS+L CSH+G V+ G F M T ++ C++DLLG +G
Sbjct: 221 MALEGIQPNVITFVSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVIDLLGRAG 280
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
L EA++L+ MP +P W +LLGAC H +T A+ + +
Sbjct: 281 WLEEAEELLRTMPVEPDKAAWNSLLGACKVHSHTDRAKRIAK 322
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC--------GCNGIESSIQIG-K 236
+ + DLE G +H RV VFVG+ L++MY KC I+S +
Sbjct: 6 SGLRDLEQGKSIHDRVAADGFDTQVFVGNALVNMYSKCRRLDLARAAFERIDSKDVVSWN 65
Query: 237 ALVTMYAE-GGSTQKADLA-FELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------- 287
+++ +++ GGS + + A F+ M RRN++SW LI+A ++ G F
Sbjct: 66 SMIAAHSQLGGSDEALETAVFDRMERRNVVSWSGLIAALAEHGRGRDAIELFHRMDLDGI 125
Query: 288 ------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKK 338
+S+L C+ +G + +G+ ++ + T +V++ G G LG A+
Sbjct: 126 QPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANALVNMYGKCGHLGSART 185
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
+ D M + V W A+L H +T+ A V + +
Sbjct: 186 VFDAMTWR-NVVSWTAMLAGYAHHGHTEEARRVFKAM 221
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 169/380 (44%), Gaps = 70/380 (18%)
Query: 22 STCLISSIFLQLIDDDYRVF-----CDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHG 76
+T ++S++ + ++ + F D+ P FT+ +I+G C +G I+ LH
Sbjct: 239 TTIIMSNVQIGQEENAVKAFRRMRETDVSPNE-FTFAAVISG---CATLGRIEWGEQLHA 294
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
V + V S+A S + M+ KC +D A + +FQ +
Sbjct: 295 HVIRRGLVDSLSVANSIMAMYSKCWQLDLAST----------------------VFQGLS 332
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
RD++SW+TMIS + G G E + G + +A+ S ++ LE G
Sbjct: 333 RRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQ 392
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
LH+ V+ + + V S LI+MY KC GS ++A F+
Sbjct: 393 LHAHVLCVGLEQNTMVQSALINMYSKC----------------------GSIKEASKIFD 430
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303
N++SW +I+ +++ G ++ F F+++L+ CSH+G V
Sbjct: 431 EAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDL 490
Query: 304 GKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G HYF +++K C ++ CM+DLL +G L +A+ +I MP + V+W LL AC
Sbjct: 491 GFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRAC 550
Query: 360 CSHYNTKLAELVMRNLLQLD 379
H + + +LQLD
Sbjct: 551 RIHGDVDCGKRAAEKILQLD 570
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/421 (21%), Positives = 158/421 (37%), Gaps = 104/421 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-----------LQLIDDDYRVFCDIGPRYL 49
+KACG S+ +H + T ++S+F + +D+ VF ++ R +
Sbjct: 75 LKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNV 134
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++ +I G VR C G + +H
Sbjct: 135 VSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQ 194
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K F + +A + M+ KCG +DY L +F+ M +
Sbjct: 195 TLKKGFTAVSFVANTLATMYNKCGKLDYG----------------------LRLFESMTQ 232
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VSW T+I + G + F + + +A S A++ +EWG L
Sbjct: 233 RDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQL 292
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ V+ GL+D S+ + +++ MY++ A F+
Sbjct: 293 HAHVIR----------RGLVD------------SLSVANSIMAMYSKCWQLDLASTVFQG 330
Query: 258 MSRRNMISWMVLISAFSQAGVLEK------------PR-FFFFFVSLLSGCSHSGPVTKG 304
+SRR++ISW +IS ++Q G E+ PR F F S+LS C + + +G
Sbjct: 331 LSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQG 390
Query: 305 KH---YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K + + T ++++ G + EA K+ DE V W A++
Sbjct: 391 KQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYN-NIVSWTAMINGYAE 449
Query: 362 H 362
H
Sbjct: 450 H 450
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 103/267 (38%), Gaps = 40/267 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAFSARASVY 189
+F KM +RD +SW T+IS E L F ++W G + + + A A
Sbjct: 23 LFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGLNM 82
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ +G LH V + VFVGS L+DMY+K G
Sbjct: 83 SVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKI----------------------GKVD 120
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
+ + F+ M RN++SW +I+ +AG ++ +F F S L C+
Sbjct: 121 EGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACA 180
Query: 297 HSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
SG + G+ H T FT + + + G L +L + M + V W
Sbjct: 181 DSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDV-VSWT 239
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDV 380
++ + + A R + + DV
Sbjct: 240 TIIMSNVQIGQEENAVKAFRRMRETDV 266
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 132/281 (46%), Gaps = 40/281 (14%)
Query: 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
+++C G+ +F +P RD+V+W M++ + GF E + F + G M
Sbjct: 292 TMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKM 351
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ + ++ +S L+ G +H ++VH +LDV++ S L+ MY KC
Sbjct: 352 TFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKC------------- 398
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA-FSQAGVLEKPRFFF--------- 286
GS A L F MS RN+++W +I+ +Q G + +F
Sbjct: 399 ---------GSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIK 449
Query: 287 ----FFVSLLSGCSHSGPVTKGKHYFTAM----AKFTYTCYFVCMVDLLGLSGLLGEAKK 338
F S+LS C+H G V +G+ +F +M ++ C VDLLG +G L EA+
Sbjct: 450 PDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAEN 509
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+I MP P +WGALL AC H + + E N+L+LD
Sbjct: 510 VILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLD 550
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 132/350 (37%), Gaps = 75/350 (21%)
Query: 37 DYRVFCDIG--PRYLFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFY 82
D V C G L NTMI G R C + +++ +H + K
Sbjct: 18 DVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSG 77
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
+ + + + M+ KCG++ A +F + +R++VS
Sbjct: 78 IQPNRYLENTLLSMYAKCGSLTDARR----------------------VFDSIRDRNIVS 115
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W MI E + + G + + + +A + L+ G +H +V
Sbjct: 116 WTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIV 175
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
G+E ++G +LV MYA+ G KA + F+ + +N
Sbjct: 176 EA----------------------GLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKN 213
Query: 263 MISWMVLISAFSQAGVL-------------EKPRFFFFFVSLLSGCSHSGPVTKGK--HY 307
+++W +LI+ ++Q G + E F S+L GC+ + GK H
Sbjct: 214 VVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHR 273
Query: 308 FTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ + + + V ++ + G L EA+KL ++P + V W A++
Sbjct: 274 YIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHR-DVVTWTAMV 322
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/422 (17%), Positives = 158/422 (37%), Gaps = 104/422 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
++ C L+SL R++HA ++ + + + +L+ + D RVF I R +
Sbjct: 54 LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNI 113
Query: 50 FTYNTMING---GVRCL----CVGNIKMA-------------------------LHLHGL 77
++ MI G + L C +K+A +H
Sbjct: 114 VSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHME 173
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ + + + S + M+ KCG + A ++F ++PE
Sbjct: 174 IVEAGLELEPRVGTSLVGMYAKCGDISKAR----------------------VIFDRLPE 211
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+++V+W +I+ + G L + + + +A+ + LE G +
Sbjct: 212 KNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKV 271
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H ++ +G + + +L+TMY + G ++A F
Sbjct: 272 HRYIIQ----------------------SGYGRELWVVNSLITMYCKCGGLEEARKLFSD 309
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+ R++++W +++ ++Q G ++ F F S+L+ CS + +G
Sbjct: 310 LPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEG 369
Query: 305 K--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K H A + Y +V + G + +A + ++M S+ V W A++ CC+
Sbjct: 370 KRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQM-SERNVVAWTAIITGCCA 428
Query: 362 HY 363
+
Sbjct: 429 QH 430
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 121/461 (26%), Positives = 195/461 (42%), Gaps = 104/461 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-----------LQLIDDDYRVFCDIGPRYL 49
+KA + SL + IH ++ S +F L +D Y VF I + +
Sbjct: 138 IKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDI 197
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVK------------------------KFYFVS 85
++N+MI+G V+ G+ + AL L +K +F +
Sbjct: 198 VSWNSMISGFVQG---GSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWA 254
Query: 86 DESIAKSSID-----------MHVKCGAVDYAESAFLRMLNPSLFCW-----------KF 123
+ I ++ ID M+VKCG+++ A F +M + W +
Sbjct: 255 CDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDY 314
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAF 182
R + F MP D+ +WN +IS ++G E L F EL N + + A+
Sbjct: 315 DAARRV--FDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTL 372
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
+A A + ++ G +H + L+ + + LIDMY KCG + KAL Y
Sbjct: 373 AACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCG--------HLEKALEVFY 424
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG--------------VLEKPRFFFFF 288
+ + RR++ W +I+ + G KP F
Sbjct: 425 S--------------VERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTF- 469
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+LL CSHSG V +G+ +F M + ++ CMVD+LG +G L EA +LI++MP
Sbjct: 470 TNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMP 529
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
P+ +WGALLGAC + N +LAE+ LL+ D G+
Sbjct: 530 IVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGA 570
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 145/378 (38%), Gaps = 56/378 (14%)
Query: 29 IFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDES 88
+F+Q++ + R Y F + V L G +HG+V K F SD
Sbjct: 117 VFIQMLHESQR----FPNSYTFPFVIKAATEVSSLLAGQA-----IHGMVMKASFGSDLF 167
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
I+ S I + G +D SA+L +F K+ E+D+VSWN+MIS
Sbjct: 168 ISNSLIHFYSSLGDLD---SAYL-------------------VFSKIVEKDIVSWNSMIS 205
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+ G E L F + + + SA A DLE+G + +
Sbjct: 206 GFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDI 265
Query: 209 DVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
++ + + ++DMY+KCG E I ++ YA+ G A F++M
Sbjct: 266 NLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMP 325
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGK 305
R ++ +W LIS++ Q G ++ F S L+ C+ G + G
Sbjct: 326 REDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGG 385
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS--KPTCVIWGALLGACCSHY 363
+ K F L+ + G +K ++ S + +W A++ H
Sbjct: 386 WIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHG 445
Query: 364 NTKLAELVMRNLLQLDVK 381
+ + A + + + VK
Sbjct: 446 HGRAAIDLFSKMQETKVK 463
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 40/243 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVY 189
+F ++P +L +WNT+I + L FI++ + +S + A V
Sbjct: 86 VFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVS 145
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G +H V+ D+F+ + LI Y SS+ G
Sbjct: 146 SLLAGQAIHGMVMKASFGSDLFISNSLIHFY---------SSL-------------GDLD 183
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
A L F + ++++SW +IS F Q G E+ F V +LS C+
Sbjct: 184 SAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA 243
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ G+ + + + M+D+ G L +A++L D+M K V W
Sbjct: 244 KRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEK-DIVSWT 302
Query: 354 ALL 356
++
Sbjct: 303 TMI 305
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 59/301 (19%), Positives = 114/301 (37%), Gaps = 51/301 (16%)
Query: 102 AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
++DYA F ++ P+L+ +WNT+I + L
Sbjct: 79 SLDYACKVFDQIPRPNLY----------------------TWNTLIRAFASSPKPIQGLL 116
Query: 162 TFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
FI++ + +S + A V L G +H V+ D+F+ + LI Y
Sbjct: 117 VFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFY 176
Query: 221 LKCG---------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELM----SRRNMISWM 267
G +E I ++++ + +GGS ++A F+ M +R N ++ +
Sbjct: 177 SSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMV 236
Query: 268 VLISAFSQAGVLEKPRFFFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKF 314
++SA ++ LE R+ ++ ++L G + + F M +
Sbjct: 237 GVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEK 296
Query: 315 TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374
+ M+D G A+++ D MP + W AL+ + + K A + R
Sbjct: 297 DIVSW-TTMIDGYAKVGDYDAARRVFDVMP-REDITAWNALISSYQQNGKPKEALAIFRE 354
Query: 375 L 375
L
Sbjct: 355 L 355
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/446 (23%), Positives = 185/446 (41%), Gaps = 106/446 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+KAC ++ + R++H+ LI S +F +++DD R + + + +
Sbjct: 291 LKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDI 350
Query: 50 FTYNTMINGGVRC--------------------------------LCVGNIKMALHLHGL 77
+N +I+G +C + IK+ +H +
Sbjct: 351 IAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTI 410
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K SD + S +D + KC +D A +F++
Sbjct: 411 SIKSGIYSDFYVINSLLDTYGKCNHIDEASK----------------------IFEERTW 448
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
DLV++ +MI+ +++G G E L ++++ + + ++ +A A++ E G L
Sbjct: 449 EDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H + D+F + L++MY KCG S + AD AF
Sbjct: 509 HVHAIKFGFMCDIFASNSLVNMYAKCG----------------------SIEDADRAFSE 546
Query: 258 MSRRNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSGCSHSGPVTKG 304
+ R ++SW +I ++Q G ++ P VS+L C+H+G V +G
Sbjct: 547 IPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEG 606
Query: 305 KHYFTAMA-----KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
K YF M K T ++ CM+DLLG SG L EA +L++ +P + +WGALLGA
Sbjct: 607 KQYFEKMEVMFGIKPTQE-HYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAA 665
Query: 360 CSHYNTKLAELVMRNLLQLDVKVFGS 385
H N +L + + L L+ + G+
Sbjct: 666 RIHKNIELGQKAAKMLFDLEPEKSGT 691
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 90/437 (20%), Positives = 166/437 (37%), Gaps = 106/437 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-----------LQLIDDDYRVFCDIGPRYL 49
+ AC L+ + RKIH ++ L F I+ VF DI +
Sbjct: 190 LNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDV 249
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++N +I G G R C +G ++ LH
Sbjct: 250 VSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSS 309
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ K SD A +DM+ KC +D A A+ MP+
Sbjct: 310 LIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAY----------------------DSMPK 347
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D+++WN +IS ++ G + + F ++++ + +T + AS+ ++ +
Sbjct: 348 KDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQI 407
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ + D +V + L+D Y K CN I+ + +I FE
Sbjct: 408 HTISIKSGIYSDFYVINSLLDTYGK--CNHIDEASKI--------------------FEE 445
Query: 258 MSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVTK 303
+ +++++ +I+A+SQ G E KP F SLL+ C++ +
Sbjct: 446 RTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPD-PFICSSLLNACANLSAYEQ 504
Query: 304 GKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
GK KF + C +V++ G + +A + E+P++ V W A++G
Sbjct: 505 GKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGI-VSWSAMIGGYA 563
Query: 361 SHYNTKLAELVMRNLLQ 377
H + K A + +L+
Sbjct: 564 QHGHGKEALRLFNQMLR 580
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 133/336 (39%), Gaps = 69/336 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +++ C ++ M +HG+ F SD +A + + M+ KCG +D +
Sbjct: 83 FTFPSVLKA---CSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRL 139
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F GI+ ER++VSWN + S + E + F E+
Sbjct: 140 F------------GGIV----------ERNVVSWNALFSCYVQSELCGEAVGLFKEMVRS 177
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + + +A A + + + G +H ++ M LD F + L+DMY K G IE
Sbjct: 178 GIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAG--EIE 235
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA--------------FSQ 275
++ + F+ ++ +++SW +I+
Sbjct: 236 GAVAV--------------------FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEM 275
Query: 276 AGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYF--VCMVDLLGLSGL 332
G +P F S L C+ G G+ +++ K ++ F V +VD+ +
Sbjct: 276 KGSGTRPN-MFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEM 334
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGA---CCSHYNT 365
+ +A++ D MP K + W AL+ C H +
Sbjct: 335 MDDARRAYDSMPKKDI-IAWNALISGYSQCGDHLDA 369
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 125/320 (39%), Gaps = 61/320 (19%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131
+ LH + KF F D S+ + ++ KC +FG R L+
Sbjct: 1 MELHAHLIKFGFSRDPSLRNHLVTLYSKC--------------------RRFGYARKLV- 39
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
+ E D+VSW++++S ++GF E L F E+ G + + + A + DL
Sbjct: 40 -DESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDL 98
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
G +H V D FV + L+ MY KCG ++ S ++ +V
Sbjct: 99 NMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGL--LDDSRRLFGGIV------------ 144
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVS-LLSGCS-- 296
RN++SW L S + Q+ + + F F +S +L+ C+
Sbjct: 145 --------ERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGL 196
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G + + H + +VD+ +G + A + ++ + P V W A+
Sbjct: 197 QEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDI-AHPDVVSWNAI 255
Query: 356 LGACCSHYNTKLAELVMRNL 375
+ C H LA +++ +
Sbjct: 256 IAGCVLHDCNDLALMLLDEM 275
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 111/420 (26%), Positives = 184/420 (43%), Gaps = 69/420 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+K+CG + +L ++H LI + F+ LID D Y++FC++ R +
Sbjct: 143 LKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNV 202
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+ +MING + ++ A L L + D + + +++ G + A
Sbjct: 203 VAWTSMING---YILSADLVSARRLFDLAPE----RDVVLWNIMVSGYIEGGDMVEARKL 255
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M N + W + L +F++MPER++ SWN +I +G FE L
Sbjct: 256 FHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVL 315
Query: 161 CTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+F + + + T SA A + L+ G +H V+ E S
Sbjct: 316 GSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH---VYAESS------------ 360
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA------- 272
G++ ++ +G AL+ MYA+ G + A F M +++ISW LI
Sbjct: 361 -------GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRG 413
Query: 273 -------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFV 321
F +KP F + +L C+H G V G YF +MA ++
Sbjct: 414 ADALNLFFQMKNAGQKPDGITF-IGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYG 472
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
CMVD+L +G L +A + +MP + VIW LLGAC + N +LAEL ++ L++L+ K
Sbjct: 473 CMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK 532
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 150/337 (44%), Gaps = 61/337 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +GN ++ +H + +D +A ID++ KCG V A
Sbjct: 327 CSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIA--------------- 371
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
LI+F M ERD+V WN+MIS L H E ++ +G + YA+
Sbjct: 372 -------LIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASM 424
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ A + + G +H++V+ +V+VG LID M
Sbjct: 425 INLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLID----------------------M 462
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
YA+ G+ A L F M +N+++W +I ++Q G EK F F
Sbjct: 463 YAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTF 522
Query: 289 VSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMP 344
+++L+GCSHSG V + +F +M + + T ++ C++D L + E + +I +MP
Sbjct: 523 IAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMP 582
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
K ++W LL AC H+N +L E ++L +LD K
Sbjct: 583 YKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPK 619
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/407 (21%), Positives = 155/407 (38%), Gaps = 93/407 (22%)
Query: 34 IDDDYRVFCDI---GPRYLFTYNTMINGGVRCLCVGN------IKMALHLHGLVKKFYFV 84
+DD R+F + G R + + G C G+ I++A +H LV + F
Sbjct: 123 VDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFG 182
Query: 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF--------------------- 123
SD+ + S +D++ K +D A F + + S+ W
Sbjct: 183 SDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFM 242
Query: 124 -----------------------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
+ MF K+P+ + +WNT++S + ET+
Sbjct: 243 QESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETI 302
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F + + A S+ + + + E G +HS V + D+FV SGLID+Y
Sbjct: 303 DLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIY 362
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KCG Q+G AL+ F +M+ R+++ W +IS + + E
Sbjct: 363 SKCG--------QVGIALII--------------FNMMTERDVVCWNSMISGLAIHSLSE 400
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVC-MV 324
+ F + S+++ C+ + +G+ + K Y Y C ++
Sbjct: 401 EAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLI 460
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL-GACCSHYNTKLAEL 370
D+ SG + +A+ + M K V W ++ G + + K EL
Sbjct: 461 DMYAKSGNMDDARLFFNCMIVK-NLVAWNEMIHGYAQNGFGEKAVEL 506
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP+R+ VSWNT+I+ + R G E L + + G ++ A+ SA +V L+ G
Sbjct: 1 MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIESSIQIG-KALVTMYAEG 245
H V + FV +GL+ MY KCG +G+ S ++ A++ A+G
Sbjct: 61 RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120
Query: 246 GSTQKADLAFELMSR 260
G+ A F MSR
Sbjct: 121 GAVDDALRLFARMSR 135
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 119/326 (36%), Gaps = 53/326 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V + HGL K + + + M+ KCG+V A
Sbjct: 51 CGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADA--------------- 95
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+RL F MP + VS+ M+ L + G + L F + G + + ++
Sbjct: 96 ----VRL---FDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSV 148
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A G + +R + + S+ V G S +G +LV +
Sbjct: 149 LGACAQAC---AGDYNVARAIQLAQSIHALVVR-----------KGFGSDQHVGNSLVDL 194
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV------------ 289
YA+G +A FE +S +++SW +LI+ + Q G E+ F+
Sbjct: 195 YAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTY 254
Query: 290 -SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS--- 345
++L+ C + V + F + K + T + ++ G L E L M
Sbjct: 255 SNMLASCIKARDVPSARAMFDKIPKPSVTTWNT-LLSGYGQEELHQETIDLFRRMQHQNV 313
Query: 346 KPTCVIWGALLGACCSHYNTKLAELV 371
+P +L +C N +L + V
Sbjct: 314 QPDRTTLAVILSSCSRLGNFELGKQV 339
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 180/396 (45%), Gaps = 60/396 (15%)
Query: 16 IHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLH 75
+H+QL+ T I ++ ++ + + P FT+ +++ + I+ + +H
Sbjct: 99 LHSQLLPTNSILLLYSHMLQNS------VLPNN-FTFPSLL------IACRKIQHGMQIH 145
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII- 126
+ KF F + S I M+V A++ A F + +P W K+G+I
Sbjct: 146 AHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLID 205
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG-LSSMLYATAFSAR 185
+FQ MP+++ SWN M++ + E F + L + T SA
Sbjct: 206 EAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSAC 265
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ L+ G +H + LD + + ++DMY KCGC +E ++Q+ +L
Sbjct: 266 TGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGC--LEKALQVFHSLP------ 317
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAG----------VLEKPRFF---FFFVSLL 292
+ R + SW +I + G +E+ R F++LL
Sbjct: 318 ------------LPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLL 365
Query: 293 SGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
+ C+HSG V +G++YF+ M + +F CMVDLLG +G++ EA+KLIDEMP P
Sbjct: 366 TACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPD 425
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+ G LLGAC H N +L E + R +++L+ G
Sbjct: 426 VTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSG 461
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 116/422 (27%), Positives = 181/422 (42%), Gaps = 75/422 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLIDDDYR-----------VFCDIGPR 47
+KAC SLP+ R IHA + IF+ LID R +F + R
Sbjct: 127 LKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKER 186
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
+ T+N+MI G VRC G ++ A L + + VS ++ +D + K G +D A
Sbjct: 187 DVVTWNSMIGGLVRC---GELEGACKLFDEMPERDMVSWNTM----LDGYAKAGEMDRAF 239
Query: 108 SAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFE 158
F RM ++ W K G + + ++F + P +++V W T+I+ GF E
Sbjct: 240 ELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVRE 299
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
+ ++ G + +A A L G +H+ + V + ID
Sbjct: 300 ATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFID 359
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE----LMSRRNMISWMVLISAFS 274
MY KCGC D AF+ +M++++++SW +I F+
Sbjct: 360 MYAKCGC-------------------------LDAAFDVFSGMMAKKDVVSWNSMIQGFA 394
Query: 275 QAGVLEK---------PRFF----FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYT 317
G EK P F + FV LL C+H+G V +G+ YF +M K
Sbjct: 395 MHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQV 454
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
++ CM+DLLG G L EA L+ MP +P +I G LL AC H + A V L +
Sbjct: 455 EHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFK 514
Query: 378 LD 379
++
Sbjct: 515 VE 516
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 152/335 (45%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ L +H + + D SI + ++++ +CG + A S+F
Sbjct: 456 CAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF----------- 504
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++M +D ++ N ++S + G E L F+ + G + + +A
Sbjct: 505 -----------EEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ +++ G +H+RV+ S + VG+ LI +Y KC
Sbjct: 554 LSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKC------------------ 595
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
GS + A + F MS RN +SW +I++ SQ G LE F F
Sbjct: 596 ----GSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTF 651
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ +L+ CSH G V +G YF +M+ ++ C++D+ G +G L AKK I+EMP
Sbjct: 652 IGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMP 711
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++W LL AC H N ++ E ++LL+L+
Sbjct: 712 IAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELE 746
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 148/356 (41%), Gaps = 72/356 (20%)
Query: 30 FLQLID--DDYRVFCD-----IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFY 82
F Q+ D + +FC I P FTY ++ C C I + +H L K
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQ-FTYPCILR---TCTCTREIDLGEQIHSLSVKTG 375
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
F SD ++ IDM+ K G ++ A R+L M + E+D+VS
Sbjct: 376 FESDMYVSGVLIDMYSKYGWLEKAR-------------------RVLEMLK---EKDVVS 413
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W +MI+ +H + L F E+ G ++ A+A S A + + G +H+R+
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY 473
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
S DV + + L+++Y +C G ++A +FE M ++
Sbjct: 474 VSGYSGDVSIWNALVNLYARC----------------------GRIREAFSSFEEMELKD 511
Query: 263 MISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFT 309
I+ L+S F+Q+G+ E+ + F F FVS LS ++ + +GK
Sbjct: 512 GITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHA 571
Query: 310 AMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ K + T ++ L G G +AK EM S+ V W ++ +C H
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM-SERNEVSWNTIITSCSQH 626
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 125/305 (40%), Gaps = 61/305 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H K F S+ + + I ++++CG+ AE +FC
Sbjct: 165 IHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER---------VFC------------- 202
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
MP RD V++NT+IS + G G L F E+ G + ++ +A AS+ DL+
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G LHS + S D + L+D+Y+KCG +E+++ I
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCG--DVETALVI------------------- 301
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGP 300
F R N++ W +++ AF Q L K F F + +L C+ +
Sbjct: 302 -FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360
Query: 301 VTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ G+ H + F Y ++D+ G L +A++++ EM + V W +++
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIA 419
Query: 358 ACCSH 362
H
Sbjct: 420 GYVQH 424
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 97/269 (36%), Gaps = 76/269 (28%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRC--------------------------------LCVG 66
RVFCD+ R T+NT+I+G +C +G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+++ LH + K SD + S +D++VKCG V+ A
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETA-------------------- 298
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
L++F ++V WN M+ + ++ F ++ G + Y
Sbjct: 299 --LVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+++ G +HS V D++V LIDMY K G
Sbjct: 357 CTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW--------------------- 395
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQ 275
+KA E++ ++++SW +I+ + Q
Sbjct: 396 -LEKARRVLEMLKEKDVVSWTSMIAGYVQ 423
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 37/243 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+++ RD VSW M+S ++G G E L + ++ G + + ++ S+
Sbjct: 99 VFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAEL 158
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H++ ++FVG+ +I +YL+C GS +
Sbjct: 159 FAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRC----------------------GSFRL 196
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRFF------FFFVSLLSGCSH 297
A+ F M R+ +++ LIS +Q G + E+ +F SLL+ C+
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKK--LIDEMPSKPTCVIWGAL 355
G + KG + + K + ++ LL L G+ + +I + V+W +
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316
Query: 356 LGA 358
L A
Sbjct: 317 LVA 319
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+++ K G+ +G L+ +Y++ G A FE +S R+ +SW+ ++S ++Q G
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 278 VLEK 281
+ E+
Sbjct: 123 LGEE 126
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 171/399 (42%), Gaps = 80/399 (20%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRC--------------------------------LCVG 66
++F + R L ++N++ING VRC +
Sbjct: 211 KLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLE 270
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW----- 121
N+ + LH +++ +A + +DM++KC ++ A+ F M ++ W
Sbjct: 271 NLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVI 330
Query: 122 ---KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
KFG++ + +F +MPE+D+V WN +I + E L F E+ +
Sbjct: 331 GYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKIT 390
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
SA + + L+ G +H V +++V +G+ L+DM
Sbjct: 391 VVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDM------------------ 432
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
YA+ G+ +KA FE M RN ++W +I + G +F
Sbjct: 433 ----YAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPD 488
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLI 340
F+ +LS C H G V +G+ YF M +K+ + ++ C+VDLLG +G L EA++LI
Sbjct: 489 EITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELI 548
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP +P V+WGAL H N + E LL+LD
Sbjct: 549 RSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELD 587
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 155/338 (45%), Gaps = 59/338 (17%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM-----------LNPSLFCWK 122
+HG+V +F SD + + IDM+ + GA++ A S F M LN + C
Sbjct: 125 VHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCND 184
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA- 181
R + F +MP R+ VSW MI+ + L F E+ G +++ A
Sbjct: 185 IEAARRI--FDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAV 242
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
S A + + G +H V LDV V + L+DMY K G ALV
Sbjct: 243 LSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSG------------ALVL- 289
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAF----------------SQAGVLEKPRFF 285
A F+ M +R++ SW +IS S++GV+
Sbjct: 290 ---------ALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNE--- 337
Query: 286 FFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLID 341
+S+LS CSH+G V +G+ F M + ++ CMVDLLG +GLL EAK+LI+
Sbjct: 338 VTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIE 397
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP KP VIW +LL AC H N LAE+ + +++L+
Sbjct: 398 HMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELE 435
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 95/245 (38%), Gaps = 32/245 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + D+VSW +IS+ + F L++ G S A SA D
Sbjct: 59 VFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKD 118
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK-----------ALV 239
L G +H V E D VG+ LIDMY + G IE + + K +L+
Sbjct: 119 LSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSG--AIEVACSVFKTMEIKDVSSWTSLL 176
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
+ + + A F+ M RN +SW +I+ + Q G + P F
Sbjct: 177 NGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQ-GEVPIPGLELFQEMRAEGKDWPT 235
Query: 288 ---FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLID 341
V++LSGC+ G G + K ++D+ SG L A K+
Sbjct: 236 VITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQ 295
Query: 342 EMPSK 346
EMP +
Sbjct: 296 EMPKR 300
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 44/212 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + +HG V K D ++ + +DM+ K GA
Sbjct: 246 CADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGA------------------- 286
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++ L +FQ+MP+RD+ SW TMIS L HG G L F ++ G + + +
Sbjct: 287 ---LVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSV 343
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA + + G L ++V C+GI+ IQ +V +
Sbjct: 344 LSACSHAGLVVEGRSLFQKMVQ---------------------CHGIKPKIQHYGCMVDL 382
Query: 242 YAEGGSTQKADLAFELMS-RRNMISWMVLISA 272
G ++A E M + + + W L+SA
Sbjct: 383 LGRAGLLREAKELIEHMPIKPDSVIWRSLLSA 414
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 47/343 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +H K ++ ++ + IDM+ KC + A+ F + ++ CW
Sbjct: 388 CASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCW 447
Query: 122 KFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I + +F+KMP R++ SWN++IS ++ + L +F + G
Sbjct: 448 NSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQS 507
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ +++ A AS+ LE G +H++++ + GI+ SI
Sbjct: 508 PGEITFSSVLLACASLCSLEMGKMVHAKIIKL----------------------GIKESI 545
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+G AL MYA+ G + F M +RN ++W +I ++ G E+ F
Sbjct: 546 FVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISA 605
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLLGEA 336
F+++L CSHSG V HYF M ++ CMVD+L +G L EA
Sbjct: 606 GITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEA 665
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ L+ ++ SK W ALL AC + N ++ E + L +LD
Sbjct: 666 EDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELD 708
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 161/378 (42%), Gaps = 52/378 (13%)
Query: 23 TCLISSIFL-QLIDDDYRVF-----CDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHG 76
T +I+ L +L D VF C + P + T+++ C+ G +A+ + G
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEI----TLVSVIKACIGAGEFDLAMSIVG 269
Query: 77 LVKKFYFVSDE-SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF------------ 123
L K + + S I ++++ G D A F M + W
Sbjct: 270 LAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLE 329
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
G R+L +MPER+ VSW T+++ + G E + + ++ G + +++
Sbjct: 330 GARRVL---DEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQI 234
A AS+ DL G +H++ + M S +VFV S LIDMY KC + + +I
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVC 446
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ-AGVLEKPRFF-------- 285
+L++ Y+ +A+ F+ M RN+ SW +IS ++Q ++ + F
Sbjct: 447 WNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506
Query: 286 ----FFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFV--CMVDLLGLSGLLGEAKK 338
F S+L C+ + GK + K FV + D+ SG L +K+
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKR 566
Query: 339 LIDEMPSKPTCVIWGALL 356
+ EMP K V W A++
Sbjct: 567 VFYEMP-KRNDVAWTAMI 583
>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
Length = 1539
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 146/332 (43%), Gaps = 65/332 (19%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
+++ +H LV K+ D +I + + + KCG ++ E F RM
Sbjct: 1080 EVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARM--------------- 1124
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
RD VSWN+MIS + + + + G L S +AT SA ASV
Sbjct: 1125 ------SETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASV 1178
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG-IESSIQIGKALVTMYAEGGS 247
LE G +H+ CG +ES + +G ALV MY++ G
Sbjct: 1179 ATLERGMEVHA-----------------------CGIRACMESDVVVGSALVDMYSKCGR 1215
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEK--------------PRFFFFFVSLLS 293
A FELM RN+ SW +IS +++ G EK P + +LS
Sbjct: 1216 IDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLS 1275
Query: 294 GCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSH G V +G +F +M++ +F CMVDLLG +G L E I+ MP KP
Sbjct: 1276 ACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNV 1335
Query: 350 VIWGALLGACC--SHYNTKLAELVMRNLLQLD 379
+IW +LGACC + NT+L LL+L+
Sbjct: 1336 LIWRTVLGACCRANGRNTELGRRAAEMLLELE 1367
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 105/268 (39%), Gaps = 42/268 (15%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGF-ETLCTFIELWNHGFGLSSMLYATAFSARAS 187
L +F MPE D VSWN++I L+ + + F+E+ G+GLS + + SA +S
Sbjct: 1016 LKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSS 1075
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ E +H+ V+ S D +G+ L+ Y KC G
Sbjct: 1076 LSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKC----------------------GE 1113
Query: 248 TQKADLAFELMSR-RNMISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLS 293
+ + F MS R+ +SW +IS + +L K F F ++LS
Sbjct: 1114 MNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLS 1173
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+ + +G + V +VD+ G + A + + MP +
Sbjct: 1174 ACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVY 1232
Query: 351 IWGALLGACCSH-YNTKLAELVMRNLLQ 377
W +++ H + K +L R +L
Sbjct: 1233 SWNSMISGYARHGHGEKALKLFTRMMLD 1260
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 96/244 (39%), Gaps = 35/244 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++M R++VS N ++ L + G F E+ + G++S Y SA +
Sbjct: 812 IFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDL-VGINSDSYVVLLSAFSEFSV 870
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G R VH + +GL D + + IG LV MYA+ G+
Sbjct: 871 LEEGRR-KGREVHAH-----VIRTGLND-----------NKVAIGNGLVNMYAKSGAIAD 913
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A FELM ++ +SW LIS Q E F +S LS C+
Sbjct: 914 ACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCAS 973
Query: 298 SGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G + G+ K T ++ L +G E K+ MP V W +
Sbjct: 974 LGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQ-VSWNS 1032
Query: 355 LLGA 358
++GA
Sbjct: 1033 VIGA 1036
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 25/117 (21%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T+++ C V ++ + +H + SD + + +DM+ KCG +DYA
Sbjct: 1166 FTFATVLSA---CASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASR- 1221
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
F+ MP R++ SWN+MIS RHG G + L F +
Sbjct: 1222 ---------------------FFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRM 1257
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 41/234 (17%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKC-GAVDYAESAFLRMLNPSLFCWKFGIIR 127
K+ + +HGL+ K + SD + I M+ C + + A S F R+ GI
Sbjct: 664 KLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRI----------GI-- 711
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA--R 185
R+ +SWN++IS+ +R G F + G G S F +
Sbjct: 712 ----------RNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLIT 761
Query: 186 ASVYDLEWG----PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN----------GIESS 231
A+ +++G + +RV D++VGS L+ + + G G+ +
Sbjct: 762 AACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNV 821
Query: 232 IQIGKALVTMYAEGGSTQKADLAFEL--MSRRNMISWMVLISAFSQAGVLEKPR 283
+ + +V + + A + E+ + N S++VL+SAFS+ VLE+ R
Sbjct: 822 VSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGR 875
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 55/251 (21%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ M E+D VSWN++IS L ++ + +F+ + G S+ + S+ AS+
Sbjct: 917 VFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGW 976
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ G +H + + G+++ + + AL+ +YAE G +
Sbjct: 977 IMLGEQIHCDGLKL----------------------GLDTDVSVSNALLALYAETGCFTE 1014
Query: 251 ADLAFELMSRRNMISWMVLISAF--SQAGVLEKPRFFF------------FFVSLLSGCS 296
F LM + +SW +I A S+A V + ++F F+++LS S
Sbjct: 1015 CLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVS 1074
Query: 297 HSG--PVTKGKHYF---------TAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
V+ H TA+ +CY C G + E +K+ M
Sbjct: 1075 SLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKC--------GEMNECEKIFARMSE 1126
Query: 346 KPTCVIWGALL 356
V W +++
Sbjct: 1127 TRDEVSWNSMI 1137
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+++L+ G ++ + L+ +Y G A F+ MS RN+++W LIS ++Q G
Sbjct: 565 ELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNG 624
Query: 278 VLEK--PRF-----------FFFFVSLLSGCSHSGP 300
++ RF + F S L C SGP
Sbjct: 625 KPDEACARFRDMVRAGFIPNHYAFGSALRACQESGP 660
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 171/399 (42%), Gaps = 80/399 (20%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRC--------------------------------LCVG 66
++F + R L ++N++ING VRC +
Sbjct: 211 KLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLE 270
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW----- 121
N+ + LH +++ +A + +DM++KC ++ A+ F M ++ W
Sbjct: 271 NLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVI 330
Query: 122 ---KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
KFG++ + +F +MPE+D+V WN +I + E L F E+ +
Sbjct: 331 GYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKIT 390
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
SA + + L+ G +H V +++V +G+ L+DM
Sbjct: 391 VVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDM------------------ 432
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
YA+ G+ +KA FE M RN ++W +I + G +F
Sbjct: 433 ----YAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPD 488
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLI 340
F+ +LS C H G V +G+ YF M +K+ + ++ C+VDLLG +G L EA++LI
Sbjct: 489 EITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELI 548
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP +P V+WGAL H N + E LL+LD
Sbjct: 549 RSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELD 587
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 110/423 (26%), Positives = 200/423 (47%), Gaps = 68/423 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-----LQLI------DDDYRVFCDIGPRYL 49
+KAC L++ + +H ++ T ++ L+L DD +R F D+ +
Sbjct: 154 LKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDV 213
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE----SIAKSSIDMH-------V 98
++ MI+ R G + AL + +++ + + ++ S+ ++S D+ +
Sbjct: 214 IPWSFMIS---RFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTI 270
Query: 99 KCGAVDYAESAFLRMLNPSLFCW-KFGII-RLLIMFQKMPERDLVSWNTMISILTRHGFG 156
A+ S + + N + C+ K G I + + +F+ + +R+ VSWNT+I + G G
Sbjct: 271 HGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDG 330
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
L F + + + + Y++ A A++ LE G +H DV VG+ L
Sbjct: 331 ERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNAL 390
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
IDM YA+ GS + A F+++ R+ +SW +I +S
Sbjct: 391 IDM----------------------YAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMH 428
Query: 277 GV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----- 318
G+ +E + F FV +LS CS++G + +GK YFT+M K Y
Sbjct: 429 GLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSM-KQDYGIEPCME 487
Query: 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
++ CMV L+G SG L +A K I+++P +P+ +IW ALLGAC H + +L + + +L+L
Sbjct: 488 HYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLEL 547
Query: 379 DVK 381
+ +
Sbjct: 548 EPR 550
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 44/213 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG V K + S+ I + ID + G V A +F
Sbjct: 68 VHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMARE----------------------VFD 105
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
++ +D+VSW MI+ + E L F ++ GF ++ +A A + + +
Sbjct: 106 EISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDA 165
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H V+ D++VG GL+++Y +CG N A
Sbjct: 166 GKTVHCSVLKTNYERDLYVGVGLLELYTRCGDN----------------------DDAWR 203
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
AF M + ++I W +IS F+Q+G EK F
Sbjct: 204 AFGDMPKNDVIPWSFMISRFAQSGQSEKALEIF 236
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 39/243 (16%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F +MPER+ VS+ T+I + E F L G L+ ++ T S+
Sbjct: 1 MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
E G +H V+ + + F+G+ LID Y GC V+M E
Sbjct: 61 WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGC-------------VSMARE----- 102
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------------FFFVSLLSGCS 296
F+ +S ++M+SW +I+++++ E FF F F +L C
Sbjct: 103 ----VFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACL 158
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLG---EAKKLIDEMPSKPTCVIWG 353
GK ++ K Y V LL L G +A + +MP K + W
Sbjct: 159 GLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMP-KNDVIPWS 217
Query: 354 ALL 356
++
Sbjct: 218 FMI 220
>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 813
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 153/341 (44%), Gaps = 63/341 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V +K LH + K + ++ + DM+ KCG +D A +
Sbjct: 425 CAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLA--------------Y 470
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F F++M +RD V WN+MIS +++G + F ++ G S+ ++A
Sbjct: 471 EF--------FRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSA 522
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ L +G +H V+ S D FV S LIDMY KCG
Sbjct: 523 LSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCG----------------- 565
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK--------------PRFFFF 287
+ A F LM +N +SW +I+A+ G + P F
Sbjct: 566 -----NLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTF 620
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
V ++S C H+G V +G HYF M + ++ CMVDL G +G + EA I M
Sbjct: 621 LV-IISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSM 679
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
P P +WG LLGAC H N +LA+L R+LL+LD K G
Sbjct: 680 PFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSG 720
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 65/267 (24%)
Query: 1 MKACGSLKSLPI-------ARKI--HAQLISTCLISSIFLQ--LIDDDYRVFCDIGPRYL 49
+KACG L ++P+ AR + H L + + ++ I D RVF ++ R
Sbjct: 119 IKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDT 178
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
+N M+ G V+ C GN LHGL
Sbjct: 179 ILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGL 238
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V F D +A + + M+ KCG + YA +F MP+
Sbjct: 239 VIGSGFEFDPQVANTLVAMYSKCGNLLYARK----------------------LFNTMPQ 276
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D V+WN +I+ ++GF E F + + G S+ +A+ + L +
Sbjct: 277 TDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEV 336
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCG 224
HS +V DV++ S LID+Y K G
Sbjct: 337 HSYIVRHRVPFDVYLKSALIDVYFKGG 363
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 94/244 (38%), Gaps = 62/244 (25%)
Query: 52 YNTMINGGVRCLCV------------GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+N MI+ GV+ V G+++ +H + + D + + ID++ K
Sbjct: 302 FNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFK 361
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
G V+ A +FQ+ D+ MIS HG +
Sbjct: 362 GGDVEMARK----------------------IFQQNILVDVAVCTAMISGYVLHGLNIDA 399
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ TF L G +S+ A+ A A+V L+ G LH ++ V VGS + DM
Sbjct: 400 INTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDM 459
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL---MSRRNMISWMVLISAFSQA 276
Y KCG + DLA+E MS R+ + W +IS+FSQ
Sbjct: 460 YAKCG-------------------------RLDLAYEFFRRMSDRDSVCWNSMISSFSQN 494
Query: 277 GVLE 280
G E
Sbjct: 495 GKPE 498
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 122/322 (37%), Gaps = 75/322 (23%)
Query: 2 KACGSLKSLPIARKIHAQLI-----STCLISSIFLQL------IDDDYRVFCDIGPRYLF 50
+AC + AR++H Q+I C SS L L D +F ++ RY
Sbjct: 19 RACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRYAL 78
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFV---SDESIAKSSIDMHVK-CGAVD-- 104
+N MI G +G AL FYF S+ S K + +K CG ++
Sbjct: 79 PWNWMIRG---LYMLGWFDFAL-------LFYFKMLGSNVSPDKYTFPYVIKACGGLNNV 128
Query: 105 -------------------YAESAFLRMLNPSLFCWKFGIIR-LLIMFQKMPERDLVSWN 144
+A SA +++ + G IR +F ++P RD + WN
Sbjct: 129 PLCMVVHDTARSLGFHVDLFAGSALIKLYADN------GYIRDARRVFDELPLRDTILWN 182
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
M+ + G + TF E+ ++S+ Y S A+ + G LH V
Sbjct: 183 VMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLV--- 239
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+GSG E Q+ LV MY++ G+ A F M + + +
Sbjct: 240 -------IGSGF------------EFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTV 280
Query: 265 SWMVLISAFSQAGVLEKPRFFF 286
+W LI+ + Q G ++ F
Sbjct: 281 TWNGLIAGYVQNGFTDEAAPLF 302
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 150/337 (44%), Gaps = 61/337 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +GN ++ +H + +D +A ID++ KCG V A
Sbjct: 428 CSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIA--------------- 472
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
LI+F M ERD+V WN+MIS L H E ++ +G + YA+
Sbjct: 473 -------LIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASM 525
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ A + + G +H++V+ +V+VG LID M
Sbjct: 526 INLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLID----------------------M 563
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
YA+ G+ A L F M +N+++W +I ++Q G EK F F
Sbjct: 564 YAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTF 623
Query: 289 VSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMP 344
+++L+GCSHSG V + +F +M + + T ++ C++D L + E + +I +MP
Sbjct: 624 IAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMP 683
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
K ++W LL AC H+N +L E ++L +LD K
Sbjct: 684 YKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPK 720
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/407 (21%), Positives = 155/407 (38%), Gaps = 93/407 (22%)
Query: 34 IDDDYRVFCDI---GPRYLFTYNTMINGGVRCLCVGN------IKMALHLHGLVKKFYFV 84
+DD R+F + G R + + G C G+ I++A +H LV + F
Sbjct: 224 VDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFG 283
Query: 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF--------------------- 123
SD+ + S +D++ K +D A F + + S+ W
Sbjct: 284 SDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFM 343
Query: 124 -----------------------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
+ MF K+P+ + +WNT++S + ET+
Sbjct: 344 QESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETI 403
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F + + A S+ + + + E G +HS V + D+FV SGLID+Y
Sbjct: 404 DLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIY 463
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KCG Q+G AL+ F +M+ R+++ W +IS + + E
Sbjct: 464 SKCG--------QVGIALII--------------FNMMTERDVVCWNSMISGLAIHSLSE 501
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVC-MV 324
+ F + S+++ C+ + +G+ + K Y Y C ++
Sbjct: 502 EAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLI 561
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL-GACCSHYNTKLAEL 370
D+ SG + +A+ + M K V W ++ G + + K EL
Sbjct: 562 DMYAKSGNMDDARLFFNCMIVK-NLVAWNEMIHGYAQNGFGEKAVEL 607
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 21/220 (9%)
Query: 59 GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL 118
G R N K A H V +D + ++++ G +A AF + +P++
Sbjct: 20 GGRKPSRSNAKAA---HARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNV 76
Query: 119 FCWKFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ + I + +MP+R+ VSWNT+I+ + R G E L + +
Sbjct: 77 YSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQE 136
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---- 225
G ++ A+ SA +V L+ G H V + FV +GL+ MY KCG
Sbjct: 137 GLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADA 196
Query: 226 ----NGIESSIQIG-KALVTMYAEGGSTQKADLAFELMSR 260
+G+ S ++ A++ A+GG+ A F MSR
Sbjct: 197 VRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSR 236
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 119/326 (36%), Gaps = 53/326 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V + HGL K + + + M+ KCG+V A
Sbjct: 152 CGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADA--------------- 196
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+RL F MP + VS+ M+ L + G + L F + G + + ++
Sbjct: 197 ----VRL---FDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSV 249
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A G + +R + + S+ V G S +G +LV +
Sbjct: 250 LGACAQAC---AGDYNVARAIQLAQSIHALVVR-----------KGFGSDQHVGNSLVDL 295
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV------------ 289
YA+G +A FE +S +++SW +LI+ + Q G E+ F+
Sbjct: 296 YAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTY 355
Query: 290 -SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS--- 345
++L+ C + V + F + K + T + ++ G L E L M
Sbjct: 356 SNMLASCIKARDVPSARAMFDKIPKPSVTTWNT-LLSGYGQEELHQETIDLFRRMQHQNV 414
Query: 346 KPTCVIWGALLGACCSHYNTKLAELV 371
+P +L +C N +L + V
Sbjct: 415 QPDRTTLAVILSSCSRLGNFELGKQV 440
>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14050, mitochondrial-like [Cucumis sativus]
Length = 611
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 152/345 (44%), Gaps = 51/345 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +++ +H F DE + S IDM+ KCG D A + F +L + W
Sbjct: 115 CSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSW 174
Query: 122 KFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I + +F + P R+L SW +IS L + G G + F E+ G
Sbjct: 175 TSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGID 234
Query: 173 L-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ ++ ++ A++ LE G +H V+ + G ES
Sbjct: 235 IVDPLVLSSVVGGCANLALLELGKQIHGLVIAL----------------------GFESC 272
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
+ I ALV MYA+ A F M R+++ISW +I +Q G E+ +
Sbjct: 273 LFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVL 332
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLL 333
FV LL CSH+G V++G+ F +M Y+ ++ C++DLL SG L
Sbjct: 333 SRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTT-DYSINPSLQHYTCLLDLLSRSGHL 391
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
EA+ L+D++P KP W +LL AC H N ++ + +L L
Sbjct: 392 DEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDL 436
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 135/346 (39%), Gaps = 55/346 (15%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
A LH + K F ++ + +D++ KCG + A L
Sbjct: 22 AGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQA----------------------LQ 59
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F +MP RD VSW ++++ + TL ++ H G ++A A +S+
Sbjct: 60 LFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLG 119
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIGK-----ALVT 240
L G +H+R + D V S LIDMY KCG + SI ++++
Sbjct: 120 YLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMIS 179
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG--------VLEKPRFFFFFV--- 289
YA G +A F RN+ SW LIS Q+G E R V
Sbjct: 180 GYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPL 239
Query: 290 ---SLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLLGEAKKLIDEM 343
S++ GC++ + GK + + +C F+ +VD+ + AK + M
Sbjct: 240 VLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRM 299
Query: 344 PSKPTCVIWGALLGACCSHYNTKLA-----ELVMRNLLQLDVKVFG 384
P K + W +++ H + A E+V+ + +V G
Sbjct: 300 PRKDV-ISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVG 344
>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Glycine max]
Length = 849
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 183/419 (43%), Gaps = 105/419 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYL 49
+ +CGSL++L R++HA I + + F++ LID + +VF + +
Sbjct: 363 LNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINV 422
Query: 50 FTYNTMINGGVR-------CLCVGNIKMAL-------------------------HLHGL 77
+YN MI G R ++++L +H L
Sbjct: 423 VSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCL 482
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ KF D + ID++ KC V G RL+ F+++ +
Sbjct: 483 IIKFGVSLDSFAGSALIDVYSKCSCV--------------------GDARLV--FEEIYD 520
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+V WN M S ++ E+L + +L + +A +A +++ L G
Sbjct: 521 RDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQF 580
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H++V+ M D FV + L+DMY KC GS +++ AF
Sbjct: 581 HNQVIKMGLDDDPFVTNSLVDMYAKC----------------------GSIEESHKAFSS 618
Query: 258 MSRRNMISWMVLISAFSQAG------------VLE--KPRFFFFFVSLLSGCSHSGPVTK 303
++R++ W +IS ++Q G ++E KP + FV LLS CSH+G +
Sbjct: 619 TNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPN-YVTFVGLLSACSHAGLLDL 677
Query: 304 GKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G H+F +M+KF ++ CMV LLG +G + EAK+ + +MP KP V+W +LL AC
Sbjct: 678 GFHHFESMSKFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSAC 736
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 44/207 (21%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+HG V + F D S+ ID ++KC V +F
Sbjct: 276 QIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRK----------------------LF 313
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++ ++D+VSW TMI+ ++ F + + F+E+ G+ + + ++ S+ L+
Sbjct: 314 NRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQ 373
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H+ + + D FV +GLIDMY KC S A
Sbjct: 374 KGRQVHAYAIKVNIDNDDFVKNGLIDMYAKC----------------------DSLTNAR 411
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVL 279
F+L++ N++S+ +I +S+ L
Sbjct: 412 KVFDLVAAINVVSYNAMIEGYSRQDKL 438
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +GN+ AL LHG V K FV D + S ID + K G VD A
Sbjct: 164 CTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEAR-------------- 209
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++F + + V+W +I+ + G +L F ++ + ++
Sbjct: 210 --------LIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSV 261
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA + + LE G +H V+ +DV V +G+ID YLKC ++ G+ L
Sbjct: 262 LSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKC------HKVKTGRKL--- 312
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISA 272
F + ++++SW +I+
Sbjct: 313 -------------FNRLVDKDVVSWTTMIAG 330
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 23/151 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F MP R+LV+W++M+S+ T+HG+ E L F + + A+ A +
Sbjct: 109 LFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLG 168
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+L LH VV DV+VG+ LID YA+ G
Sbjct: 169 NLSQALQLHGFVVKGGFVQDVYVGTSLID----------------------FYAKRGYVD 206
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+A L F+ + + ++W +I+ +++ G E
Sbjct: 207 EARLIFDGLKVKTTVTWTAIIAGYAKLGRSE 237
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 123/337 (36%), Gaps = 63/337 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ +H K +D+ + IDM+ KC ++ A
Sbjct: 366 CGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARK------------- 412
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F + ++VS+N MI +R E L F E+ + + + +
Sbjct: 413 ---------VFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSL 463
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+S++ LE +H ++ SLD F GS LID+Y KC C G
Sbjct: 464 LGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVG-------------- 509
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFF 287
A L FE + R+++ W + S +SQ E KP F
Sbjct: 510 --------DARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPN-EFT 560
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY-FVC--MVDLLGLSGLLGEAKKLIDEMP 344
F ++++ S+ + G+ + + K FV +VD+ G + E+ K
Sbjct: 561 FAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTN 620
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ W +++ H + A V ++ VK
Sbjct: 621 QRDIAC-WNSMISTYAQHGDAAKALEVFERMIMEGVK 656
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 48/232 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +I + +++ H V K D + S +DM+ KCG+++ + A
Sbjct: 559 FTFAAVIAAASN---IASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKA 615
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F +RD+ WN+MIS +HG + L F +
Sbjct: 616 ----------------------FSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIME 653
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + + + SA + L+ G H H E S+ F GIE
Sbjct: 654 GVKPNYVTFVGLLSACSHAGLLDLGFH------HFE-SMSKF---------------GIE 691
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAGVLE 280
I +V++ G +A + M + + W L+SA +G +E
Sbjct: 692 PGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVE 743
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 20/141 (14%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV---------------LE 280
L+ Y++ A F+ M RN+++W ++S ++Q G E
Sbjct: 91 NTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSE 150
Query: 281 KPRFFFFFVSLLSGCSHSGPVTKG--KHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAK 337
KP + S++ C+ G +++ H F F Y ++D G + EA+
Sbjct: 151 KPN-EYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEAR 209
Query: 338 KLIDEMPSKPTCVIWGALLGA 358
+ D + K T V W A++
Sbjct: 210 LIFDGLKVK-TTVTWTAIIAG 229
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 140/270 (51%), Gaps = 41/270 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F++MP+R++VSW M+S ++G E + TF+E+W G + + ++ A A+V
Sbjct: 175 LFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVG 234
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+E G + +V+V + L++MY KC GS +
Sbjct: 235 AMELGRKVEEYARGKGLLRNVYVANALLEMYSKC----------------------GSIR 272
Query: 250 KADLAFELMSRR-NMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGC 295
+A F+ + R+ ++ SW +I AF+ G+ + F+ FV ++ C
Sbjct: 273 QAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILAC 332
Query: 296 SHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
+H G V +GK +F +M A+F+ ++ CMVDLLG +GLL E+ LI MP +P VI
Sbjct: 333 THGGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVI 392
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDVK 381
WGALLGAC H N +LAEL M L+ L+ +
Sbjct: 393 WGALLGACSFHGNVELAELAMDKLIHLEPQ 422
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 207 SLDVFVGSGLIDMYLKCGCNGIES----------SIQIGKALVTMYAEGGSTQKADLAFE 256
S D F+ S L+ Y K +E+ + AL++ YA+GG A+ FE
Sbjct: 119 SSDPFLSSALVSFYAKSKLL-VEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFE 177
Query: 257 LMSRRNMISWMVLISAFSQAGVLEK 281
M RN++SW ++S ++Q G E+
Sbjct: 178 EMPDRNVVSWTAMVSGYAQNGRHEE 202
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 155/336 (46%), Gaps = 55/336 (16%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---------FG 124
+HG++ +F ++ + + IDM+ + G + A+ F +M + W G
Sbjct: 124 VHGMIFRFQLGANSIVGNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNGFVMCNG 183
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+ +F +MP R+ V+W MI+ R G L F ++ G +++ TA +
Sbjct: 184 LESARRVFDEMPWRNDVAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVI--TAVAV 241
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ DL G H H + VH G I ++ + + AL+ MY++
Sbjct: 242 LSGCADL--GAHDHGQAVH-----------GYISKV------NLDKGVTVSNALMDMYSK 282
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSL 291
GG + A F+ + ++++ SW +ISA S G F+ F+ +
Sbjct: 283 GGCVESAMKIFDRLVKKDVFSWTTMISAHSSHGKGNHALEVFYDMLESGVIPNDVTFLLV 342
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCY--------FVCMVDLLGLSGLLGEAKKLIDEM 343
LSGCSHSG + + F M + CY + CMVDLL +GLL EAK+LID M
Sbjct: 343 LSGCSHSGLLVEANKLFNGMIQ----CYGFEPKIEHYGCMVDLLCRAGLLEEAKELIDNM 398
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P P VIW +LL AC + N LAE+ + +++L+
Sbjct: 399 PMDPDAVIWRSLLSACMNQRNLGLAEIAGKKIIELE 434
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 106/273 (38%), Gaps = 27/273 (9%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + + D V++ ++I++ + F +L N G S A SA D
Sbjct: 58 VFGYIQDPDRVTYTSLINLYLSTQLPIKAFSVFSKLVNEGLRPDSHSVVGALSACGKKQD 117
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI--QIG-------KALVTM 241
L G +H + + + VG+ LIDMY + G I + Q+G +L+
Sbjct: 118 LLNGKLVHGMIFRFQLGANSIVGNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNG 177
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL--------------EKPRFFFF 287
+ + A F+ M RN ++W +I+ + + G+ E
Sbjct: 178 FVMCNGLESARRVFDEMPWRNDVAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVIT 237
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
V++LSGC+ G G+ ++K ++D+ G + A K+ D +
Sbjct: 238 AVAVLSGCADLGAHDHGQAVHGYISKVNLDKGVTVSNALMDMYSKGGCVESAMKIFDRLV 297
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
K W ++ A SH A V ++L+
Sbjct: 298 KKDV-FSWTTMISAHSSHGKGNHALEVFYDMLE 329
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/445 (26%), Positives = 183/445 (41%), Gaps = 105/445 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYL 49
+ +CGS ++L R++HA I L S F++ LID D +VF + + +
Sbjct: 338 LTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNV 397
Query: 50 FTYNTMING---------------------------------GVRCLCVGNIKMALHLHG 76
+YN MI G GV ++++ +HG
Sbjct: 398 ISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFA-LELSKQIHG 456
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
L+ KF D + ID++ KC V A +F++M
Sbjct: 457 LIIKFGVSLDLFAGSALIDVYSKCSYVKDARH----------------------VFEEMN 494
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E+D+V WN M T+H E L + L + +A +A +++ L G
Sbjct: 495 EKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQ 554
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
H+++V M FV + L+DMY KC GS ++A F
Sbjct: 555 FHNQLVKMGLDFCPFVTNALVDMYAKC----------------------GSIEEARKMFN 592
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303
R+++ W +IS +Q G E+ F FV++LS CSH+G V
Sbjct: 593 SSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVED 652
Query: 304 GKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
G ++F +M F T ++ C+V LLG SG L EAK+ I++MP +P ++W +LL AC
Sbjct: 653 GLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACR 712
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
N +L + + D K GS
Sbjct: 713 IAGNVELGKYAAEMAISTDPKDSGS 737
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 23/149 (15%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASV 188
++F KMP ++L++W++M+S+ ++ G+ E L F++L G + + A+ A +
Sbjct: 83 VVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQL 142
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+E G LH VV DV+VG+ LID Y K G+
Sbjct: 143 GVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSK----------------------NGNI 180
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG 277
++A L F+ +S + ++W +I+ +++ G
Sbjct: 181 EEARLVFDQLSEKTAVTWTTIIAGYTKCG 209
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 84/414 (20%), Positives = 163/414 (39%), Gaps = 78/414 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID--------DDYR-VFCDIGPRYL 49
++AC L + ++H ++ + +++ LID ++ R VF + +
Sbjct: 136 IRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTA 195
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES- 108
T+ T+I G +C G ++L L +++ V D + S + C +++ E
Sbjct: 196 VTWTTIIAGYTKC---GRSAVSLELFAQMRETNVVPDRYVVSSVLS---ACSMLEFLEGG 249
Query: 109 ----AFLRMLNPSLFCWKFGIIRLLI--------------MFQKMPERDLVSWNTMISIL 150
A++ + ++ +LI +F +M ++++SW TMIS
Sbjct: 250 KQIHAYVLRRGTEM---DVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY 306
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
++ F +E + F E+ G+ + ++ S LE G +H+ + D
Sbjct: 307 MQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDE 366
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
FV +GLIDMY K S++ I A F++M+ +N+IS+ +I
Sbjct: 367 FVKNGLIDMYAK-------SNLLI---------------DAKKVFDVMAEQNVISYNAMI 404
Query: 271 SAFSQAGVLEK-------------PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317
+S L + P FVSLL + + K + KF +
Sbjct: 405 EGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVS 464
Query: 318 CYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
++D+ + +A+ + +EM K V+W A+ H + A
Sbjct: 465 LDLFAGSALIDVYSKCSYVKDARHVFEEMNEK-DIVVWNAMFFGYTQHLENEEA 517
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+G++S + L+ + ++ A + F+ M +N+I+W ++S +SQ G E+
Sbjct: 56 SGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMV 115
Query: 286 --------------FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLG 328
F S++ C+ G V KG H F + F Y ++D
Sbjct: 116 FVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYS 175
Query: 329 LSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+G + EA+ + D++ S+ T V W ++
Sbjct: 176 KNGNIEEARLVFDQL-SEKTAVTWTTIIA 203
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 167/363 (46%), Gaps = 63/363 (17%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
R+ D FT ++++ C + + +H K+ S+ + S +DM+
Sbjct: 165 RMLSDGAEPNEFTLSSLVKC---CGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYA 221
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFE 158
+CG + A +++F K+ ++ VSWN +I+ R G G E
Sbjct: 222 RCGYLGEA----------------------MLVFDKLGCKNEVSWNALIAGYARKGEGEE 259
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
L F+ + G+ + Y+ S+ +S+ LE G LH+ H+ S VG
Sbjct: 260 ALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHA---HLMKSSQKLVG----- 311
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
+G L+ MYA+ GS + A+ F+ + + +++S ++ ++Q G+
Sbjct: 312 --------------YVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGL 357
Query: 279 LEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFT---YTCYFVC 322
++ F F+S+L+ CSH+ + +GKHYF M K+ ++
Sbjct: 358 GKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYAT 417
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
+VDLLG +GLL +AK I+EMP +PT IWGALLGA H NT++ + + +LD
Sbjct: 418 IVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSY 477
Query: 383 FGS 385
G+
Sbjct: 478 PGT 480
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 133/317 (41%), Gaps = 81/317 (25%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
YNT++ RC +G +K +H V F D I S + M+ +CG+++ A
Sbjct: 77 YNTLLK---RCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARR--- 130
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG- 170
+F +MP RD+VSW +MI+ ++ + L F + + G
Sbjct: 131 -------------------LFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGA 171
Query: 171 ----FGLSSML----YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F LSS++ Y +++ ++ W HS +VFVGS L+DMY +
Sbjct: 172 EPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHS---------NVFVGSSLVDMYAR 222
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
CG +G+A+ L F+ + +N +SW LI+ +++ G E+
Sbjct: 223 CG--------YLGEAM--------------LVFDKLGCKNEVSWNALIAGYARKGEGEEA 260
Query: 283 RFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL 329
F + +LLS CS G + +GK + K + LL +
Sbjct: 261 LALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHM 320
Query: 330 ---SGLLGEAKKLIDEM 343
SG + +A+K+ D++
Sbjct: 321 YAKSGSIRDAEKVFDKL 337
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA-----GVLEKPRFF--- 285
I +L+ MYA GS + A F+ M R+M+SW +I+ ++Q +L PR
Sbjct: 111 IQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDG 170
Query: 286 -----FFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFV--CMVDLLGLSGLLGEAK 337
F SL+ C + G+ K+ ++ FV +VD+ G LGEA
Sbjct: 171 AEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAM 230
Query: 338 KLIDEMPSKPTCVIWGALLGA 358
+ D++ K V W AL+
Sbjct: 231 LVFDKLGCKNE-VSWNALIAG 250
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 151/347 (43%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C + + +H + K D + + IDM+ KCG ++ A+
Sbjct: 480 FTYGSVLKA---CSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKK- 535
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ ++ ++ +VSWN +I+ T + F E+
Sbjct: 536 ---------------------IHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKM 574
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ YA A A++ + G +H +++ +E DV++ S L+DMY KCG
Sbjct: 575 SVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCG----- 629
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+ Q + L FE ++ ++W +I ++Q G+ E+ +F
Sbjct: 630 -----------------NMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERM 672
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
FVS+L C+H G + KG HYF AM ++ CM+D++G SG
Sbjct: 673 QLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGR 732
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ EA KLI EMP + VIW LL C H N ++AE +LQL+
Sbjct: 733 ISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLE 779
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/420 (21%), Positives = 155/420 (36%), Gaps = 104/420 (24%)
Query: 2 KACGSLKSLPIARKIHAQLI-----STCLISSIFLQL------IDDDYRVFCDIGPRYLF 50
++C L +L + ++HA + S + + L + + D R+F + L
Sbjct: 285 RSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQ 344
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
YN +I G VR C + LH L
Sbjct: 345 CYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLS 404
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
K S+ +A S +DM+ KC A+ A MF +M R
Sbjct: 405 VKSTLRSNICVANSILDMYGKCEALSEA----------------------CCMFDEMERR 442
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
D VSWN +I+ ++G ETL F + Y + A +S L G +H
Sbjct: 443 DAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIH 502
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+R++ LD FVG LIDMY KCG IE + +I + +
Sbjct: 503 NRIIKSGLGLDSFVGGALIDMYCKCGM--IEEAKKI--------------------HDRI 540
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGK 305
++ M+SW +I+ F+ E FF+ + +L C++ V GK
Sbjct: 541 EQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGK 600
Query: 306 HYFTAMAKFT-YTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ K ++ ++ +VD+ G + ++ + ++ P+K V W A++ H
Sbjct: 601 QIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDF-VTWNAMICGYAQH 659
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 142/337 (42%), Gaps = 63/337 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +K+ LH K F SD ++ +++DM+ KCG++ A+
Sbjct: 287 CAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQR------------- 333
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +P+ L +N +I R+ GFE L F L G G + + + A
Sbjct: 334 ---------IFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGA 384
Query: 182 FSARASVY-DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
FSA AS+ DL+ G LHS V ++ V + ++DMY KC +AL
Sbjct: 385 FSACASIKGDLD-GRQLHSLSVKSTLRSNICVANSILDMYGKC------------EAL-- 429
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FF 287
+A F+ M RR+ +SW +I+A Q G E+ F F
Sbjct: 430 --------SEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFT 481
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMP 344
+ S+L CS + G + K FV ++D+ G++ EAKK+ D +
Sbjct: 482 YGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIE 541
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ T V W A++ +++ A +L++ VK
Sbjct: 542 QQ-TMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVK 577
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + + +HGL+ + F D + +DM+ KC +D +
Sbjct: 186 CSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDS--------------- 230
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F ++P ++ V W+ +I+ ++ L F E+ G G+S +YA+
Sbjct: 231 -------LKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASV 283
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
F + A + L+ G LH+ + + D+ VG+ +DMY KCG
Sbjct: 284 FRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCG 326
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 46 PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105
P + T++ +I C ++K H + F+ D I+ + M+++C ++Y
Sbjct: 40 PTKIRTFSHIIQ---ECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNY 96
Query: 106 AESAFLRMLNPSLFCWKF--------GIIRLL-IMFQKMPERDLVSWNTMISILTRHGFG 156
A F +M + + G + L F P+RD+VSWN+M+S ++G
Sbjct: 97 AYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGEC 156
Query: 157 FETLCTFIEL-WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
+++ F+++ + G +A A + + D G +H +V M DV GS
Sbjct: 157 RKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSA 216
Query: 216 LIDMYLKC 223
L+DMY KC
Sbjct: 217 LLDMYAKC 224
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 31/132 (23%)
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G H+R++ DV++ + L+ MYL+C
Sbjct: 59 LKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCS----------------------HLNY 96
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---------FVSLLSGCSHSGPV 301
A FE MS+R++IS+ +IS ++ AG + FF+ + S+LSG +G
Sbjct: 97 AYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGEC 156
Query: 302 TKGKHYFTAMAK 313
K F M +
Sbjct: 157 RKSIDVFLDMGR 168
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 140/270 (51%), Gaps = 41/270 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F++MP+R++VSW M+S ++G E + TF+E+W G + + ++ A A+V
Sbjct: 175 LFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVG 234
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+E G + +V+V + L++MY KC GS +
Sbjct: 235 AMELGRKVEEYARGKGLLRNVYVANALLEMYSKC----------------------GSIR 272
Query: 250 KADLAFELMSRR-NMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGC 295
+A F+ + R+ ++ SW +I AF+ G+ + F+ FV ++ C
Sbjct: 273 QAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILAC 332
Query: 296 SHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
+H G V +GK +F +M A+F+ ++ CMVDLLG +GLL E+ LI MP +P VI
Sbjct: 333 THGGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVI 392
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDVK 381
WGALLGAC H N +LAEL M L+ L+ +
Sbjct: 393 WGALLGACSFHGNVELAELAMDKLIHLEPQ 422
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 207 SLDVFVGSGLIDMYLKCGCNGIES----------SIQIGKALVTMYAEGGSTQKADLAFE 256
S D F+ S L+ Y K +E+ + AL++ YA+GG A+ FE
Sbjct: 119 SSDPFLSSALVSFYAKSKLL-VEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFE 177
Query: 257 LMSRRNMISWMVLISAFSQAGVLEK 281
M RN++SW ++S ++Q G E+
Sbjct: 178 EMPDRNVVSWTAMVSGYAQNGRHEE 202
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 170/380 (44%), Gaps = 77/380 (20%)
Query: 30 FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESI 89
FL+++ D +++FCD+ C +I+ A H + +F + ++ SI
Sbjct: 4 FLKILPD-HQLFCDLLEA--------------CKLSQDIRTATETHTRIIRFGYGTNSSI 48
Query: 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI--IRLLI--------------MFQ 133
A S I +V C ++ A + +F W + + L+I +F
Sbjct: 49 AASLISTYVNCNQLNLAYQVIRQ-----VFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFC 103
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
KMP+RD+V+WN+MI R+G E L +F + + +A+ +A A + L
Sbjct: 104 KMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNH 163
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
LH +V ++ + S LIDMY KCG IE++ ++
Sbjct: 164 AQWLHDLMVQKRIEVNFILSSALIDMYSKCG--RIETAKEV------------------- 202
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
FE + R ++ W LI+ + G+ F F+ +L CSH G
Sbjct: 203 -FESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGL 261
Query: 301 VTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
V +G+ YF M + Y+ ++ MVDLLG +GLL EA +I MP +P ++W L
Sbjct: 262 VKEGRKYFDLMENY-YSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRIL 320
Query: 356 LGACCSHYNTKLAELVMRNL 375
L AC +H NT+L E+ + N+
Sbjct: 321 LSACRTHRNTELGEVAVANI 340
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 60/345 (17%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM+ C + ++ +HGL+ K F SD + + IDM+ KCG++ AE F
Sbjct: 533 TMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLF--- 589
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
N + F +D V+WN +I+ ++G E + +F ++ F
Sbjct: 590 -NKTDFT-----------------KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHP 631
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+S+ + + A A + G H+ ++ M G S+
Sbjct: 632 NSVTFVSVLPAAAYLAAFREGMAFHACIIQM----------------------GFLSNTL 669
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------ 287
+G +L+ MYA+ G ++ F M ++ +SW ++S ++ G ++ F
Sbjct: 670 VGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQ 729
Query: 288 -------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEA 336
FVS+LS C H G V +G+ F +M+ + ++ CMVDLLG +GL E
Sbjct: 730 VQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDET 789
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
I MP +P +WGALLG+C H N KL E+ + +L++L+ +
Sbjct: 790 LGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPR 834
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 120/309 (38%), Gaps = 63/309 (20%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+ NI++ +HG V + F S +++ ID++ KCG VD A
Sbjct: 243 LSNIELCRSIHGYVFRRDFSS--AVSNGLIDLYSKCGDVDVARR---------------- 284
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F +M ++D VSW TM++ +G E L F ++ ++ + +AF A
Sbjct: 285 ------VFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLA 338
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A DLE G +H + D+ V + L+ MY KC
Sbjct: 339 AAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC--------------------- 377
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
G T+KA F + R++++W +I+A Q G E+ F +S+
Sbjct: 378 -GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436
Query: 292 LSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
L C+ + GK H FT A +V + G A + M S+
Sbjct: 437 LPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-D 495
Query: 349 CVIWGALLG 357
V W +L+
Sbjct: 496 IVTWNSLIN 504
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 121/318 (38%), Gaps = 60/318 (18%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+++ +HG + SD +A + M+ KCG + A+
Sbjct: 344 DLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQ------------------ 385
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F + RDLV+W+ +I+ L + G+ E L F E+ N + + + A A
Sbjct: 386 ----LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ L+ G +H V + ++S + G ALV+MYA+ G
Sbjct: 442 DLSLLKLGKSIHCFTVKAD----------------------MDSDLSTGTALVSMYAKCG 479
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLS 293
A F MS R++++W LI+ ++Q G F+ V ++
Sbjct: 480 FFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVP 539
Query: 294 GCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+ + +G H F C+ ++D+ G L A+ L ++ V
Sbjct: 540 ACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599
Query: 351 IWGALLGACCSHYNTKLA 368
W ++ A + + K A
Sbjct: 600 TWNVIIAAYMQNGHAKEA 617
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 22/146 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F P + WN+MI TR E L + + G + A +
Sbjct: 85 VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALN 144
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G H + DVF+G+GL+DMY K G ++
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKM----------------------GDLKR 182
Query: 251 ADLAFELMSRRNMISWMVLISAFSQA 276
A F+ M +R++++W +I+ SQ+
Sbjct: 183 AREVFDKMPKRDVVAWNAMIAGLSQS 208
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 55/233 (23%)
Query: 47 RYLFTYNTMINGGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD 104
+Y FT+ V C G N++ + HG + + D I +DM+ K G +
Sbjct: 129 KYTFTF-------VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLK 181
Query: 105 YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
A +F KMP+RD+V+WN MI+ L++ E + F
Sbjct: 182 RARE----------------------VFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFR 219
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
+ G SS+ F + ++E +H V + S V +GLID+Y KC
Sbjct: 220 SMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFS--SAVSNGLIDLYSKC- 276
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
G A F+ M ++ +SW +++ ++ G
Sbjct: 277 ---------------------GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNG 308
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 144/305 (47%), Gaps = 47/305 (15%)
Query: 101 GAVDYAESAFLRMLNPSLFCWK---FGIIR------LLIMFQKMPERDLVSWNTMISILT 151
A+ A F M ++ CW G +R +F +MPER++VSW TMIS
Sbjct: 181 AALASARKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYA 240
Query: 152 RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211
++G + L F ++ G L ++ A +A A + DL+ G +HS + D F
Sbjct: 241 KNGKCKQALNLFDQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYI------QDTF 294
Query: 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271
VGS + + + AL+ MYA G +A F M R+ +SW LI+
Sbjct: 295 VGSNQRVL------------VSLNNALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLIT 342
Query: 272 AFSQAG----VLEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF- 314
AF++ G VLE R F+ +L CSH+G V +G+ F M +
Sbjct: 343 AFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRW 402
Query: 315 ---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
++ CMVDLL +G L EA++LI MP KP +WGALLG C + N +LA LV
Sbjct: 403 GIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAVWGALLGGCRFYRNAELASLV 462
Query: 372 MRNLL 376
+ L+
Sbjct: 463 SQKLV 467
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 88/217 (40%), Gaps = 27/217 (12%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ + + WN MI R +++ F ++ + Y+ +A S
Sbjct: 82 VFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTSSLS 141
Query: 191 LEWGPHLHSRVV-HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G +HS+V+ + S +VF+ S L++ Y + EG +
Sbjct: 142 LREGQQVHSKVLTNGYYSSNVFLMSKLVNFYA-----------------AVVGGEGAALA 184
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---------FVSLLSGCSHSGP 300
A F+ MS RN++ W +++ + + G L+ R F+ + +++SG + +G
Sbjct: 185 SARKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGK 244
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAK 337
+ + F M K V ++ L LG+ K
Sbjct: 245 CKQALNLFDQMRKAGVELDQVVLLAALTACAELGDLK 281
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 181/429 (42%), Gaps = 80/429 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+KA + P+ R +H+ ++ + F+ LID D +VF ++ R +
Sbjct: 13 IKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDV 71
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSI------DMHVKCGAV 103
++NT + VR L G+ K F DE K ++ D + K G V
Sbjct: 72 VSWNTAMAAMVR---------EGELAGVRKLF----DEMPEKDTVSWNTILDGYTKAGEV 118
Query: 104 DYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHG 154
+ A F RM ++ W K G + + ++F KMP ++LV+W M+S + G
Sbjct: 119 EAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKG 178
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
E F ++ L + +A A L G +H V V +
Sbjct: 179 LVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCN 238
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAF 273
LIDM+ KCGC +AD F+ + +++ +SW +I F
Sbjct: 239 ALIDMFCKCGC----------------------VNRADYVFDTETVQKDSVSWNSIIGGF 276
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTY 316
+ G +K F +++LS C+H G V +G+ +F+ M +
Sbjct: 277 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQ 336
Query: 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CM+DLLG GL+ EA LI MP +P VIWG+LL AC H N + AE+ + L
Sbjct: 337 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELS 396
Query: 377 QLDVKVFGS 385
+L G+
Sbjct: 397 KLQPSNAGN 405
>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
Length = 720
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 146/335 (43%), Gaps = 62/335 (18%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
CV ++ L H K F + + IDM+ KCGA
Sbjct: 253 CVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGA--------------------- 291
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIELWNHGFGLSSMLYATAF 182
G+ +F+++ DLV WNTMIS +++ E L F ++ G+ + A
Sbjct: 292 GMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAI 351
Query: 183 SARASVYDLEWGPHLHSRVVHME-PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA +++ G H+ + E PS + I + ALVTM
Sbjct: 352 SACSNLSSPSQGKQFHALAMKSEIPS----------------------NQISVNNALVTM 389
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
Y++ G+ Q A F+ M + N ++ +I+ ++Q G+ + F
Sbjct: 390 YSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITL 449
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
VS+LS C+H+G V +GK YF M ++ CM+DLLG +G L EA++LID MP
Sbjct: 450 VSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMP 509
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P W ALLGAC + N +LAE LQL+
Sbjct: 510 FSPGSAAWAALLGACRKYGNMELAEKAANQFLQLE 544
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 124/319 (38%), Gaps = 63/319 (19%)
Query: 59 GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL 118
GV C ++ + LH L F S S+ S + + K G ++ AE
Sbjct: 145 GVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAE----------- 193
Query: 119 FCWKFGIIRLLIMFQKMPE--RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
++F M E RD VSWN+MI +H G + L + ++ + GF +
Sbjct: 194 -----------MVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMF 242
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
A+ + + V DL G H++ + + + VGSGLIDMY KCG G+ S ++
Sbjct: 243 TLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGA-GMSESRKV-- 299
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------- 287
FE + +++ W +IS +SQ L F
Sbjct: 300 ------------------FEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYW 341
Query: 288 -----FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV----CMVDLLGLSGLLGEAKK 338
FV +S CS+ ++GK + K + +V + G L +A+K
Sbjct: 342 PDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARK 401
Query: 339 LIDEMPSKPTCVIWGALLG 357
L MP T + + G
Sbjct: 402 LFQRMPQHNTVTLNSIIAG 420
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/445 (26%), Positives = 184/445 (41%), Gaps = 105/445 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYL 49
+ +CGSL++L R++HA I L S+ F++ LID D +VF + + +
Sbjct: 246 LTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNV 305
Query: 50 FTYNTMING---------------------------------GVRCLCVGNIKMALHLHG 76
+YN MI G GV ++++ +HG
Sbjct: 306 ISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFA-LELSKQIHG 364
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
L+ K D + ID++ KC V A +F++M
Sbjct: 365 LIIKXGVSLDLFAGSALIDVYSKCSYVKDARH----------------------VFEEMN 402
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E+D+V WN M T+H E L + L + +A +A +++ L G
Sbjct: 403 EKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQ 462
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
H+++V M FV + L+DMY KC GS ++A F
Sbjct: 463 FHNQLVKMGLDFCPFVTNALVDMYAKC----------------------GSIEEARKMFN 500
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303
R+++ W +IS +Q G E+ F FV++LS CSH+G V
Sbjct: 501 SSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVED 560
Query: 304 GKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
G ++F +M F T ++ C+V LLG SG L EAK+ I++MP +P ++W +LL AC
Sbjct: 561 GLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACR 620
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
N +L + + D K GS
Sbjct: 621 IAGNVELGKYAAEMAISTDPKDSGS 645
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 134/324 (41%), Gaps = 63/324 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G ++ LHG V + F D + S ID + K G ++ A
Sbjct: 47 CTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVAR-------------- 92
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++F ++ E+ V+W T+I+ T+ G +L F ++ + ++
Sbjct: 93 --------LVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSV 144
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA + + LE G +H+ V+ +DV V + LID Y KC + ++ G+ L
Sbjct: 145 LSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKC------NRVKAGRKL--- 195
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
F+ M +N+ISW +IS + Q E + F F
Sbjct: 196 -------------FDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFAC 242
Query: 289 VSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPS 345
S+L+ C + +G+ H +T A + ++D+ S LL +AKK+ D M +
Sbjct: 243 TSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVM-A 301
Query: 346 KPTCVIWGALLGACCSHYNTKLAE 369
+ + + A++ S KL+E
Sbjct: 302 EQNVISYNAMIEGYSSQ--EKLSE 323
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/364 (20%), Positives = 140/364 (38%), Gaps = 67/364 (18%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
VF + + T+ T+I G +C G ++L L +++ V D + S +
Sbjct: 94 VFDQLLEKTAVTWTTIIAGYTKC---GRSXVSLELFAQMRETNVVPDRYVVSSVLS---A 147
Query: 100 CGAVDYAES-----AFLRMLNPSLFCWKFGIIRLLI--------------MFQKMPERDL 140
C +++ E A++ + ++ +LI +F +M +++
Sbjct: 148 CSMLEFLEGGKQIHAYVLRRGTEM---DVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNI 204
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
+SW TMIS ++ F +E + F E+ G+ + ++ S+ LE G +H+
Sbjct: 205 ISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAY 264
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
+ + FV +GLIDMY K A F++M+
Sbjct: 265 TIKANLESNEFVKNGLIDMYAKSNL----------------------LXDAKKVFDVMAE 302
Query: 261 RNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLL--SGCSHSGPVTKGK 305
+N+IS+ +I +S L + P FVSLL S + ++K
Sbjct: 303 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQI 362
Query: 306 HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
H + + ++D+ + +A+ + +EM K V+W A+ H
Sbjct: 363 HGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKD-IVVWNAMFFGYTQHLE 421
Query: 365 TKLA 368
+ A
Sbjct: 422 NEEA 425
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 23/129 (17%)
Query: 150 LTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+ G+ E L F++L G + + A+ A + +E G LH VV
Sbjct: 11 MEDEGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQ 70
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
DV+VG+ LID Y K G + A L F+ + + ++W
Sbjct: 71 DVYVGTSLIDFYSK----------------------NGBIEVARLVFDQLLEKTAVTWTT 108
Query: 269 LISAFSQAG 277
+I+ +++ G
Sbjct: 109 IIAGYTKCG 117
>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2261; Flags: Precursor
gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 114/442 (25%), Positives = 191/442 (43%), Gaps = 111/442 (25%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLID-----------DDYR-VF--------- 41
AC L++L + +++H+ I + L+ + L+D DD R VF
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVM 337
Query: 42 ------------CDIGPRYLFTYNTMINGG-------------VRCLCVGNIKMALHLHG 76
C++ + ++ MI G C + + ++ + G
Sbjct: 338 SWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLG 397
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K S+ S+A S I M VK ++ A+ AF + +
Sbjct: 398 QAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF----------------------ESLS 435
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFI-ELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
E++LVS+NT + R+ FE + E+ G+S+ +A+ S A+V + G
Sbjct: 436 EKNLVSYNTFLDGTCRN-LNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGE 494
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+HS+VV + G+ + + AL++MY++ GS A F
Sbjct: 495 QIHSQVVKL----------------------GLSCNQPVCNALISMYSKCGSIDTASRVF 532
Query: 256 ELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVSLLSGCSHSGPV 301
M RN+ISW +I+ F++ G VLE KP + V++LS CSH G V
Sbjct: 533 NFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY-VAILSACSHVGLV 591
Query: 302 TKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
++G +F +M + ++ CMVDLL +GLL +A + I+ MP + ++W LG
Sbjct: 592 SEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLG 651
Query: 358 ACCSHYNTKLAELVMRNLLQLD 379
AC H NT+L +L R +L+LD
Sbjct: 652 ACRVHSNTELGKLAARKILELD 673
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 38/222 (17%)
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
L+K +F SD + S IDM VK E++F +F KM
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVK------GENSFENAYK---------------VFDKMS 230
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E ++V+W MI+ + GF E + F+++ GF ++ FSA A + +L G
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQ 290
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI------------ESSIQIGKALVTMYAE 244
LHS + D V L+DMY KC +G + S+ AL+T Y +
Sbjct: 291 LHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMK 348
Query: 245 GG--STQKADLAFELMSRRNM-ISWMVLISAFSQAGVLEKPR 283
+T+ +L E++++ ++ + SAF G L PR
Sbjct: 349 NCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPR 390
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 125/331 (37%), Gaps = 62/331 (18%)
Query: 44 IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
I P T+++++ C+ + ++ +H + +F D + S I ++ K G
Sbjct: 57 IRPMDSVTFSSLLKS---CIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDS 113
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
AE F M +FG +RD+VSW+ M++ +G + + F
Sbjct: 114 AKAEDVFETMR-------RFG------------KRDVVSWSAMMACYGNNGRELDAIKVF 154
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
+E G + Y A S FVG G + +
Sbjct: 155 VEFLELGLVPNDYCYTAVIRA---------------------CSNSDFVGVGRVTLGFLM 193
Query: 224 GCNGIESSIQIGKALVTMYAEG-GSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEK 281
ES + +G +L+ M+ +G S + A F+ MS N+++W ++I+ Q G E
Sbjct: 194 KTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREA 253
Query: 282 PRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVD 325
RFF F S+ S C+ ++ GK + + C V M
Sbjct: 254 IRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYA 313
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G + + +K+ D M + + W AL+
Sbjct: 314 KCSADGSVDDCRKVFDRMEDH-SVMSWTALI 343
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 132/266 (49%), Gaps = 39/266 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+KM ERD +W+ MI ++ F E L TF E+ G + + + A++
Sbjct: 289 VFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAV 348
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L++G +H+ ++ +DVF S LI MY+KCG + K
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG----------------------NLDK 386
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F ++++ W +I+ ++Q G+ E+ F ++ L+ CS+
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446
Query: 298 SGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G V +G+ F +M + ++ CMVDLLG SGL+ EA LI MP +P VIWG
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLD 379
AL+GAC H N ++AE+ + LL+L+
Sbjct: 507 ALMGACRMHRNAEIAEVAAKKLLELE 532
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 38/238 (15%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F++MP RDL S+N +IS G L A +A AS+
Sbjct: 68 LGLFRRMPSRDLASYNALIS---------------------GLSLRRQTLPDAAAALASI 106
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
VV L +V GL+ ++ E + L+ + G
Sbjct: 107 -------PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRV 159
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSG 299
+A F+ M R++++W ++S + QAG + + R F + +++SG + +G
Sbjct: 160 NEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNG 219
Query: 300 PVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
V + F M + + +V + +G + +A +L + MP P ++G
Sbjct: 220 EVNLARKLFEVMPERNEVSWTAMLVGYIQ-AGHVEDAAELFNAMPEHPVAACNAMMVG 276
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 255 FELMSRRNMISWMVLISAFS--------QAGVLEK---PRFFFFFVSLLSGCSHSGPVTK 303
F M R++ S+ LIS S A L P F SLL G G +
Sbjct: 71 FRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLAD 130
Query: 304 GKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
F M + + Y V + LL +G + EA++L DEMP + V W A+L C
Sbjct: 131 AIRLFQQMPERNHVSYTVLLGGLLD-AGRVNEARRLFDEMPDR-DVVAWTAMLSGYCQ 186
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 34/257 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP+RD+V+W M+S + G E F E+ +++A S Y
Sbjct: 165 LFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV--------VSWTAMISGYA 216
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGI-ESSIQIGKALVTM 241
+L ++ + P + + ++ Y++ G N + E + A++
Sbjct: 217 QNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG 276
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
+ + G A FE M R+ +W +I A+ Q L + F
Sbjct: 277 FGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSV 336
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLS---GLLGEAKKLIDEMPS 345
+S+L+ C+ + G+ AM + ++ + L+ + G L +AK++
Sbjct: 337 ISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396
Query: 346 KPTCVIWGALLGACCSH 362
K V+W +++ H
Sbjct: 397 K-DIVMWNSMITGYAQH 412
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 157/356 (44%), Gaps = 57/356 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES------------- 108
C + + +HG + + F + ++ + I M+ K G V+ A
Sbjct: 250 CANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVI 309
Query: 109 AFLRMLNPSLFCWKFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
AF +LN + K G I +F + + D+V+W MI ++G + + F +
Sbjct: 310 AFTALLNGYV---KLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ G +S A SA +SV L G +H+ + +L
Sbjct: 367 SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEAL------------------- 407
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSR-RNMISWMVLISAFSQAGVLEKPRFFF 286
S +G AL TMYA+ GS A F L+ + R+ +SW +I A +Q G+ E+ F
Sbjct: 408 ---SPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELF 464
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMA---KFTYT-CYFVCMVDLLGL 329
+V +LS C+H G V +G+ YF M K T ++ CMVDL G
Sbjct: 465 EQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGR 524
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+GLL EA K ++ MP +P + WG+LL +C + N LA++ LL ++ G+
Sbjct: 525 AGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGA 580
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 161/387 (41%), Gaps = 42/387 (10%)
Query: 35 DDDYRVFCD-IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D ++F D + + L T T+ N C G+ + +H V K + +A S
Sbjct: 89 EDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSL 148
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKF--------GIIRL-LIMFQKMPERDLVSWN 144
++M+ K G + A+ F RM + W G + L L F+ + ERD+VSWN
Sbjct: 149 LNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWN 208
Query: 145 TMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
+MI+ +HGF E L F L + A+A SA A++ L +G +H +V
Sbjct: 209 SMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVR 268
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK-------------ALVTMYAEGGSTQK 250
VG+ LI MY K G G+E + +I + AL+ Y + G
Sbjct: 269 TMFDASGAVGNALISMYAKSG--GVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITP 326
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG------------VLEKPR-FFFFFVSLLSGCSH 297
A F + ++++W +I + Q G V E PR F ++LS S
Sbjct: 327 ARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSS 386
Query: 298 SGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ GK + +A+ V + + +G + A+K+ + + V W +
Sbjct: 387 VTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTS 446
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVK 381
++ A H + A + +L L +K
Sbjct: 447 MIMALAQHGLGEEAIELFEQMLTLGIK 473
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 41/199 (20%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSSMLYATAFSAR 185
+F +P RD VSW T+I + G + + F+++ F L+++L + A +
Sbjct: 63 VFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGS 122
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ G +HS VV + G+ + + + +L+ MYA+
Sbjct: 123 RGI-----GKKVHSFVVKL----------------------GLHACVPVANSLLNMYAKT 155
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE---------KPRFFFFFVSLLSGCS 296
G + A + F+ M RN SW +IS G ++ R + S+++GC+
Sbjct: 156 GDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCN 215
Query: 297 HSGPVTKGKHYFTAMAKFT 315
G + +F+++ K T
Sbjct: 216 QHGFDNEALQFFSSILKDT 234
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 19/150 (12%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF----------- 285
+++ YA+ G +KA F+L+ R+ +SW +I ++Q G E + F
Sbjct: 47 ILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPT 106
Query: 286 -FFFVSLLSGCSHSGPVTKGKHYFTAMAKFT-YTCYFVC--MVDLLGLSGLLGEAKKLID 341
F ++L+ C+ +G GK + + K + C V ++++ +G L AK + D
Sbjct: 107 QFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFD 166
Query: 342 EMPSKPTCVIWGAL--LGACCSHYNTKLAE 369
M + T W A+ L C + LA+
Sbjct: 167 RMKLRNTSS-WNAMISLHMNCGRVDLALAQ 195
>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
Length = 1113
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 117/442 (26%), Positives = 189/442 (42%), Gaps = 111/442 (25%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLID-----------DDYR-VF--------- 41
AC L++L + +++H+ I + L+ + L+D DD R VF
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVM 337
Query: 42 ------------CDIGPRYLFTYNTMINGG-------------VRCLCVGNIKMALHLHG 76
C++ + ++ MI G C + + ++ + G
Sbjct: 338 SWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLG 397
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K S+ S+A S I M VK ++ A+ AF + +
Sbjct: 398 QAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF----------------------ESLS 435
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFI-ELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
E++LVS+NT + R+ FE + E+ G+S+ +A+ S A+V + G
Sbjct: 436 EKNLVSYNTFLDGTCRN-LNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGE 494
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+HS+VV + S + V + LI MY KCG S A F
Sbjct: 495 QIHSQVVKLGLSCNQPVCNALISMYSKCG----------------------SIDTASRVF 532
Query: 256 ELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVSLLSGCSHSGPV 301
M RN+ISW +I+ F++ G VLE KP + V++LS CSH G V
Sbjct: 533 NFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY-VAILSACSHVGLV 591
Query: 302 TKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
++G +F +M + ++ CMVDLL +GLL +A + I+ MP + ++W LG
Sbjct: 592 SEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLG 651
Query: 358 ACCSHYNTKLAELVMRNLLQLD 379
AC H NT+L +L R +L+LD
Sbjct: 652 ACRVHSNTELGKLAARKILELD 673
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 38/222 (17%)
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
L+K +F SD + S IDM VK E++F +F KM
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVK------GENSFENAYK---------------VFDKMS 230
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E ++V+W MI+ + GF E + F+++ GF ++ FSA A + +L G
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQ 290
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI------------ESSIQIGKALVTMYAE 244
LHS + D V L+DMY KC +G + S+ AL+T Y +
Sbjct: 291 LHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMK 348
Query: 245 GG--STQKADLAFELMSRRNM-ISWMVLISAFSQAGVLEKPR 283
+T+ +L E++++ ++ + SAF G L PR
Sbjct: 349 NCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPR 390
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 126/331 (38%), Gaps = 62/331 (18%)
Query: 44 IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
I P T+++++ C+ + ++ +H + +F D + S I ++ K G
Sbjct: 57 IRPMDSVTFSSLLKS---CIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDS 113
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
AE F M +FG +RD+VSW+ M++ +G + + F
Sbjct: 114 AKAEDVFETMR-------RFG------------KRDVVSWSAMMACYGNNGRELDAIKVF 154
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
+E G + Y A S D FVG G + +
Sbjct: 155 VEFLELGLVPNDYCYTAVIRA-CSNSD--------------------FVGVGRVTLGFLM 193
Query: 224 GCNGIESSIQIGKALVTMYAEG-GSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEK 281
ES + +G +L+ M+ +G S + A F+ MS N+++W ++I+ Q G E
Sbjct: 194 KTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREA 253
Query: 282 PRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVD 325
RFF F S+ S C+ ++ GK + + C V M
Sbjct: 254 IRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYA 313
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G + + +K+ D M + + W AL+
Sbjct: 314 KCSADGSVDDCRKVFDRMEDH-SVMSWTALI 343
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 106/448 (23%), Positives = 183/448 (40%), Gaps = 108/448 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID--------DDYRVFCDIGPRY-L 49
+KAC + + R+IH ++ F+ L+D DD R D PR L
Sbjct: 313 LKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDL 372
Query: 50 FTYNTMINGGVRCLCVGNIKMALH----------------------------------LH 75
+N +I+G G + H +H
Sbjct: 373 ILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVH 432
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM 135
L +K +SD + ID + KCG +DYA + +F++
Sbjct: 433 ALAEKIGLLSDSHVINGLIDSYWKCGQLDYA----------------------IKVFKES 470
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
D++S TM++ L++ G + + F+++ G S + ++ +A S+ E G
Sbjct: 471 RSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGK 530
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+H+ ++ + + DVF G+ L+ Y KCG S + AD+AF
Sbjct: 531 QVHAHLIKRQFTSDVFAGNALVYAYAKCG----------------------SIEDADMAF 568
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVT 302
+ R ++SW +I +Q G ++ F S+LS C+H+G V
Sbjct: 569 SGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVD 628
Query: 303 KGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
K YF +M K T+ ++ CM+D+LG +G L +A +L++ MP + +WGALLG
Sbjct: 629 DAKKYFESM-KETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLG 687
Query: 358 ACCSHYNTKLAELVMRNLLQLDVKVFGS 385
A H + +L + L L+ + G+
Sbjct: 688 ASRVHRDPELGRMAAEKLFTLEPEKSGT 715
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 126/343 (36%), Gaps = 73/343 (21%)
Query: 46 PR-YLFTYNTMINGGVRC---------LCVGNIKMALHLHGLVKKFYFVSDESIAKSSID 95
PR L + M GV C C +++ +H L V D +A + +
Sbjct: 84 PRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVANALVA 143
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF 155
++ G VD A F + ER+ VSWNTMIS ++
Sbjct: 144 VYGGFGMVDEARRMFDEYVGVG------------------GERNAVSWNTMISAYVKNDQ 185
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
+ + F E+ G + ++ +A DLE G +H VV DVF +
Sbjct: 186 SGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANA 245
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA--- 272
L+DMY K G + A FE M +++SW IS
Sbjct: 246 LVDMYSKL----------------------GDIEMAATVFEKMPAADVVSWNAFISGCVT 283
Query: 273 -------------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYT 317
+G++ F S+L C+ +G G+ H F A +
Sbjct: 284 HGHDHRALELLLQMKSSGLVPN---VFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFD 340
Query: 318 CYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
+ V +VD+ G L +A+K+ D MP + ++W AL+ C
Sbjct: 341 EFVAVGLVDMYAKHGFLDDARKVFDFMPRR-DLILWNALISGC 382
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 126/326 (38%), Gaps = 104/326 (31%)
Query: 7 LKSLPIAR---KIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDI----GPRY 48
LK P R ++HA ++T L+ +F+ ++D+ R+F + G R
Sbjct: 110 LKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERN 169
Query: 49 LFTYNTMING---------------------------GVRCL---CVG--NIKMALHLHG 76
++NTMI+ G C+ C G +++ +HG
Sbjct: 170 AVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHG 229
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
V + + D A + +DM+ K G ++ A + +F+KMP
Sbjct: 230 AVVRTGYEKDVFTANALVDMYSKLGDIEMAAT----------------------VFEKMP 267
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSSMLYATAFSARASVYDL 191
D+VSWN IS HG L +++ + G F LSS+L A A A ++L
Sbjct: 268 AADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKAC---AGAGAFNL 324
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
G +H +V D FV GL+D MYA+ G A
Sbjct: 325 --GRQIHGFMVKAVADFDEFVAVGLVD----------------------MYAKHGFLDDA 360
Query: 252 DLAFELMSRRNMISWMVLISAFSQAG 277
F+ M RR++I W LIS S G
Sbjct: 361 RKVFDFMPRRDLILWNALISGCSHDG 386
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 126/343 (36%), Gaps = 76/343 (22%)
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
+FT ++++ C G + +HG + K DE +A +DM+ K G +D A
Sbjct: 306 VFTLSSVLKA---CAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARK 362
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+F MP RDL+ WN +IS + G E L F +
Sbjct: 363 ----------------------VFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRK 400
Query: 169 HGFGL--SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL-----DVFVGSGLIDMYL 221
G L + A+ + AS + H+R VH D V +GLID Y
Sbjct: 401 EGLDLDVNRTTLASVLKSTASSEAI-----CHTRQVHALAEKIGLLSDSHVINGLIDSYW 455
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
KCG ++ +I++ F+ ++IS +++A SQ E
Sbjct: 456 KCG--QLDYAIKV--------------------FKESRSDDIISSTTMMTALSQCDHGED 493
Query: 282 P-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVD 325
+ F F SLL+ C+ +GK + K +T +V
Sbjct: 494 AIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVY 553
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
G + +A +P + V W A++G H + K A
Sbjct: 554 AYAKCGSIEDADMAFSGLPER-GIVSWSAMIGGLAQHGHGKRA 595
>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 167/390 (42%), Gaps = 88/390 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V +++ LH ++ K+ SD + S IDM+ KCG V+ A F RM+ L
Sbjct: 20 CGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGEVEKARRVFDRMVEKDLVAL 79
Query: 122 ------------------------KFGIIRLLI--------------------MFQKM-- 135
K GI +I MF+ M
Sbjct: 80 NAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISGFAQKGDDAMVSKMFELMIS 139
Query: 136 --PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
E D++SW ++IS L ++ F ++ GF +S +T +A A++ ++
Sbjct: 140 NGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPTSATISTVLAACATMANVRR 199
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H V + D++V S L+DM YA+ G +A +
Sbjct: 200 GREIHGYAVVIRVEDDIYVRSALVDM----------------------YAKCGFISEASV 237
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSG 299
F +M RN ++W +I ++ G ++ F F ++L+ CSH+G
Sbjct: 238 LFYMMPERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACSHAG 297
Query: 300 PVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
V G+ F M + ++ CMVDLLG +G L EA +I +MP KP +WGAL
Sbjct: 298 MVEHGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGAL 357
Query: 356 LGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
LGAC +H + LAE+ R+L +L+ + G+
Sbjct: 358 LGACRNHGDIGLAEVAARHLAELEPENAGN 387
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG- 224
+ G G + + + VYD++ G LHS ++ DV+V S LIDMY KCG
Sbjct: 1 MQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGE 60
Query: 225 --------CNGIESSIQIGKALVTMYAEGGSTQKA----DLAFELMSRRNMISWMVLISA 272
+E + A+++ Y + G ++ D +L + N+I+W LIS
Sbjct: 61 VEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISG 120
Query: 273 FSQAG 277
F+Q G
Sbjct: 121 FAQKG 125
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 23/155 (14%)
Query: 44 IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
+G +L T T+ C + N++ +HG D + + +DM+ KCG +
Sbjct: 173 LGRGFLPTSATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFI 232
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
A ++F MPER+ V+WN+MI HG+ E + F
Sbjct: 233 SEAS----------------------VLFYMMPERNTVTWNSMIFGYANHGYCDEAIELF 270
Query: 164 IELW-NHGFGLSSMLYATAFSARASVYDLEWGPHL 197
++ + G L + + +A + +E G L
Sbjct: 271 DQMEKSEGNKLDHLTFTAVLTACSHAGMVEHGQSL 305
>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
Length = 787
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 67/335 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +++ C + + + +H V K SD ++ + +D++ KCG
Sbjct: 342 FTFASVLQA---CATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCG-------- 390
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWN 168
RM N + +F + P R D+ WNT+I + G G + L F+ +
Sbjct: 391 --RMENS------------MXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLE 436
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
+ + + Y++A A AS+ LE G +HS V D+ V + LIDMY KC
Sbjct: 437 YRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKC----- 491
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF 288
GS + A L F+LM++++ +SW +IS +S G+
Sbjct: 492 -----------------GSIKDARLVFDLMNKQDEVSWNAMISGYSMHGL---------- 524
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF--TYTC--YFVCMVDLLGLSGLLGEAKKLIDEMP 344
C+++G + +G+ YFT+M + C ++ CMV LLG G L +A KLIDE+P
Sbjct: 525 -----ACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIP 579
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+P+ ++W ALLGAC H + +L + +++L+++
Sbjct: 580 FQPSVMVWRALLGACVIHNDIELGRISAQHVLEME 614
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 112/299 (37%), Gaps = 60/299 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H + K S+ + + ID + CG VD A F +L
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILY------------------ 202
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+D+VSW M++ + E L F ++ GF ++ +A+ F A + +
Sbjct: 203 ----KDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDV 258
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H + LD++VG L+D+Y K G A
Sbjct: 259 GKSVHGCALKSRYELDLYVGVALLDLYTK----------------------SGDIDDARX 296
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGP 300
AFE + ++++I W +I+ ++Q+ ++ FF F S+L C+
Sbjct: 297 AFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEG 356
Query: 301 VTKGKHYFTAMAKF-TYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ G + K ++ FV ++D+ G + + L E P + W ++
Sbjct: 357 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVI 415
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 103/257 (40%), Gaps = 45/257 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER+ +S+ T+I E + F+ L G L+ ++ T S+
Sbjct: 95 LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDC 154
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
E G +H+ + + + FVG+ LID Y CG +
Sbjct: 155 GELGWGIHACIFKLGHESNAFVGTALIDAYSVCG-------------------------R 189
Query: 251 ADLAFELMS---RRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSG 294
D+A E+ ++M+SW +++ F++ ++ + F F F S+
Sbjct: 190 VDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKA 249
Query: 295 C--SHSGPVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C + V K H +++ Y V ++DL SG + +A+ +E+P K +
Sbjct: 250 CLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDV-IP 308
Query: 352 WGALLGACCSHYNTKLA 368
W ++ +K A
Sbjct: 309 WSFMIARYAQSDQSKEA 325
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 163/346 (47%), Gaps = 51/346 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL---RMLNPSL 118
C + ++++ LH LVK+ E++ + IDM+ KCG +A F R P
Sbjct: 250 CSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQS 309
Query: 119 -------FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+C + +F +M RD++++N+MI+ G E L F+ + H
Sbjct: 310 WNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDL 369
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ + + SA AS+ L G LH+ I++ L +E+
Sbjct: 370 RVDNFTVVSLLSACASLGALPQGRALHA----------------CIELRL------VETD 407
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---- 287
I IG AL+ MY + G +A + F+ M +R++ +W +I+ + G+ + +F+
Sbjct: 408 IYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRC 467
Query: 288 ---------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY-----FVCMVDLLGLSGLL 333
++++L+ CSHS + +G+ YF M + Y + + CM+DLLG SGLL
Sbjct: 468 DGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEM-RILYNIHPQIEHYGCMIDLLGRSGLL 526
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA L+ MP +P VIW ++L AC H LA+ +LL+++
Sbjct: 527 DEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIE 572
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 36/251 (14%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII---RLLIMFQKMPE 137
+A S I M+ + G AF + W K G++ RLL+ + P
Sbjct: 145 VANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLL--AQAPV 202
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD++SW ++I+ +R E + F + + G + SA + + DLE G L
Sbjct: 203 RDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSL 262
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI----------QIGKALVTMYAEGGS 247
HS V S+ + LIDMY KCG G + Q A++ Y + G
Sbjct: 263 HSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGH 322
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
A F+ M R++I++ +I+ + +G L + F VSLLS
Sbjct: 323 VDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSA 382
Query: 295 CSHSGPVTKGK 305
C+ G + +G+
Sbjct: 383 CASLGALPQGR 393
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 133/340 (39%), Gaps = 70/340 (20%)
Query: 65 VGNIKMALHLHGLVKKFYF-VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
G+ ++ + +HG+V K F S + + IDM+ KC D++
Sbjct: 1010 TGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHS----------------- 1052
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGF---GFETL-CTFIE-LWNHGFGLSSMLY 178
L +F ++P L N++I+ R E L C +E + S+ +
Sbjct: 1053 -----LAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMK 1107
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
A + SA S+ + LHS +V + G E + + +L
Sbjct: 1108 AISLSASPSLTSCQM---LHSCLVKL----------------------GFEMDMAVCSSL 1142
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
+T YA G + L FE + N+I + +ISA ++ G + F
Sbjct: 1143 ITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDN 1202
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLID 341
F+ ++GC +G +G+ M +F CMV+LL G + EA ++++
Sbjct: 1203 VTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMME 1262
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ P + W +LL +C +H L + L+ + K
Sbjct: 1263 QSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRK 1302
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 81/207 (39%), Gaps = 25/207 (12%)
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIE----SSIQIGKAL-----VTMYAEGGSTQKADLA 254
M PS FV + LI MY + G G I + A+ ++ A+ G A L
Sbjct: 137 MLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLL 196
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
R++ISW LI+A+S+A ++ F + +LS CS +
Sbjct: 197 LAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDL 256
Query: 302 TKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G + + + + V ++D+ G G A+++ D + W A++
Sbjct: 257 ELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDG 316
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H + +A + + D+ F S
Sbjct: 317 YCKHGHVDVARSLFDQMEVRDIITFNS 343
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 128/272 (47%), Gaps = 39/272 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER+ VSW+ M++ + G G E L F ++ G + +A A +
Sbjct: 181 LFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGA 240
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H YLK N I ++ +G ALV MYA+ G Q
Sbjct: 241 LEQGKWVHG--------------------YLKA--NNIRMTVFLGTALVDMYAKCGEVQL 278
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
FE M +N+++W +I + G F F+ L C+H
Sbjct: 279 GMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTH 338
Query: 298 SGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G V KG+ F +M ++ CMVDLL +GLL EA+ ++++MP KP +IWG
Sbjct: 339 TGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWG 398
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
AL+ C H N +LAE V+++ ++L+ G+
Sbjct: 399 ALMAGCRFHKNVELAEYVIKHWIELEPDKSGA 430
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 17/141 (12%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
L+T +A G A F+ M RN +SW +++ + QAG + F
Sbjct: 165 LITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPD 224
Query: 287 --FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLID 341
V +L+ C+ G + +GK H + T + +VD+ G + ++ +
Sbjct: 225 DTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFE 284
Query: 342 EMPSKPTCVIWGALLGACCSH 362
M K + W ++ H
Sbjct: 285 GMKDK-NVLAWTTMIKGLAMH 304
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 147/340 (43%), Gaps = 48/340 (14%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---G 124
I + + +H V + D + + IDM+ +C +D A F M + W G
Sbjct: 139 IWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISG 198
Query: 125 IIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
+RL +F MPERD VSW MI + G E L F E+
Sbjct: 199 FLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTM 258
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
+ +A A + LE G + +D FVG+ L+DMY KC
Sbjct: 259 VSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKC--------------- 303
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----------- 287
GS Q+A F+ M R+ +W +I + G E+ F+
Sbjct: 304 -------GSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDE 356
Query: 288 --FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLID 341
F+ +L+ C+H+G V KG+ +F +M +F C++DLLG +G L EA + I
Sbjct: 357 VTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIG 416
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
MP +P IWG LL AC H N+++ +L +LL+LD +
Sbjct: 417 NMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTE 456
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
V WN +IS R + C+F+++ G + + Y T SA + G +H
Sbjct: 89 VVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKC 148
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
VV +G+ +++G AL+ MYAE A FE M
Sbjct: 149 VV----------------------ASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEV 186
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF 286
RN +SW +IS F + G +++ R F
Sbjct: 187 RNTVSWTSVISGFLRLGQVDQARTLF 212
>gi|224088569|ref|XP_002308477.1| predicted protein [Populus trichocarpa]
gi|222854453|gb|EEE92000.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 162/369 (43%), Gaps = 54/369 (14%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+F ++ P FT+ T+I+ +G++ + K + + +D + K
Sbjct: 85 LFLNVTPNE-FTFGTVIHSST---SLGDLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAK 140
Query: 100 CGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLVSWNTMISIL 150
G++ A+ AF + +P++ + K +F++MPER++V+WN MI
Sbjct: 141 LGSIQEAQRAFEDIQHPNIVSYTALIHGYLKKGRFEEAFELFKQMPERNIVTWNAMIGGF 200
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
++ G E + F+E+ G + A A A++ LE G H+ + V
Sbjct: 201 SQMGQNEEAVNLFVEMIREGLVPCQYTFPCAIIAAANIAALEMGRSFHACAIKTMGEFSV 260
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
FVG+ LI Y KCG +E S+++ F + R ++SW +I
Sbjct: 261 FVGNSLISFYAKCG--SMEDSLRL--------------------FYELPERTIVSWNAVI 298
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317
F+Q G E F+ + LL C+H+G V KG YF A+ +
Sbjct: 299 CGFAQNGRGENAVDFYERMRNTGLRPDSVTLLGLLWACNHAGLVDKGYSYFN-RARLEHP 357
Query: 318 C-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
++ CMVDLL G EA++ + ++P P W ALLG C H NT+L L
Sbjct: 358 SLLKPKHYACMVDLLSRCGCFKEAQEFLRDLPFNPGVGFWKALLGGCKIHSNTELGALAG 417
Query: 373 RNLLQLDVK 381
RN+L LD K
Sbjct: 418 RNILDLDPK 426
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 147/318 (46%), Gaps = 52/318 (16%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLF-CW--------KFGIIRLLI-MFQKMPERDLVSW 143
ID +++ G V+ A F M + S+ W + G++ + F +M ERD +SW
Sbjct: 211 IDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISW 270
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
+ MI + G E L F ++ + + SA A++ L+ G +H+
Sbjct: 271 SAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 330
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA---FELMSR 260
LD +G+ L+DMY KCG + DLA FE MS
Sbjct: 331 NSIQLDGVLGTSLVDMYAKCG-------------------------RIDLAWEVFEKMSN 365
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF----------FFVSLLSGCSHSGPVTKGKHYFTA 310
+ + SW +I + G E F FV +L+ C+H G V KG F +
Sbjct: 366 KEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLTIFNS 425
Query: 311 MAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
M K ++ C+VDLLG +GLL EA+K++ +P++PT +WGALLGAC H N +
Sbjct: 426 MRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVE 485
Query: 367 LAELVMRNLLQLDVKVFG 384
L E V + LL+L+ + G
Sbjct: 486 LGERVGKILLELEPQNSG 503
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 147/318 (46%), Gaps = 52/318 (16%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLF-CW--------KFGIIRLLI-MFQKMPERDLVSW 143
ID +++ G V+ A F M + S+ W + G++ + F +M ERD +SW
Sbjct: 212 IDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISW 271
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
+ MI + G E L F ++ + + SA A++ L+ G +H+
Sbjct: 272 SAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 331
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA---FELMSR 260
LD +G+ L+DMY KCG + DLA FE MS
Sbjct: 332 NSIQLDGVLGTSLVDMYAKCG-------------------------RIDLAWEVFEKMSN 366
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF----------FFVSLLSGCSHSGPVTKGKHYFTA 310
+ + SW +I + G E F FV +L+ C+H G V KG F +
Sbjct: 367 KEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEITFVGVLNACAHGGLVQKGLTIFNS 426
Query: 311 MAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
M K ++ C+VDLLG +GLL EA+K++ +P++PT +WGALLGAC H N +
Sbjct: 427 MRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVE 486
Query: 367 LAELVMRNLLQLDVKVFG 384
L E V + LL+L+ + G
Sbjct: 487 LGERVGKILLELEPQNSG 504
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 111/421 (26%), Positives = 170/421 (40%), Gaps = 82/421 (19%)
Query: 20 LISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVK 79
+I CL ++ + I R+ D P FTY T+ C ++ +HG V
Sbjct: 104 VIKGCLENNKLFKAIYFYGRMVIDARPNK-FTYPTLFKA---CSVAQAVQEGRQIHGHVV 159
Query: 80 KFYFVSDESIAKSSIDMH------------------------------VKCGAVDYAESA 109
K SD I + I M+ +KCG ++ A+
Sbjct: 160 KHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGL 219
Query: 110 FLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETL 160
F +M ++ W I L +F +M ERD +SW++M+ G E L
Sbjct: 220 FAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEAL 279
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F ++ + ++ +A +++ ++ G +H+ + LD +G+ L+DMY
Sbjct: 280 EIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMY 339
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KC G FE M R + +W +I + G E
Sbjct: 340 AKC----------------------GRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAE 377
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCM 323
F V +L+ C+H+G V KG F M +F ++ CM
Sbjct: 378 DALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCM 437
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383
VDLLG SGL EA+ LI+ MP KP +WGALLGAC H N LAE V + LL+L+ +
Sbjct: 438 VDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNS 497
Query: 384 G 384
G
Sbjct: 498 G 498
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 47/298 (15%)
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL--- 160
D+A F + NP++F W +I+ + K+ + + + M+ + F + TL
Sbjct: 84 DFALKVFSSIPNPNVFIWNI-VIKGCLENNKL-FKAIYFYGRMVIDARPNKFTYPTLFKA 141
Query: 161 CTFIE-----------LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
C+ + + HG G + + AS LE +R + D
Sbjct: 142 CSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLE-----DARKMFYSGESD 196
Query: 210 VFVGSGLIDMYLKCG----CNGIESSIQIG-----KALVTMYAEGGSTQKADLAFELMSR 260
V + +ID YLKCG G+ + + + ++ A+GG+ A F+ MS
Sbjct: 197 VVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSE 256
Query: 261 RNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHY 307
R+ ISW ++ + AG ++ F F S+L+ CS+ G + +G+
Sbjct: 257 RDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWV 316
Query: 308 FTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ + + V ++D+ G L ++ +EM + W A++G H
Sbjct: 317 HAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER-EIFTWNAMIGGLAIH 373
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 152/335 (45%), Gaps = 53/335 (15%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM-----------LNPSLFCWK 122
+HG+V +F SD + + IDM+ + GA++ A S F M LN + C
Sbjct: 376 VHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCND 435
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA- 181
R + F +MP R+ VSW MI+ + L F E+ G +++ A
Sbjct: 436 IEAARRI--FDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAV 493
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
S A + + G +H V LDV V + L+DMY K G ALV
Sbjct: 494 LSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSG------------ALVL- 540
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLIS-------------AFSQAGVLEKPRFFFFF 288
A F+ M +R++ SW +IS AFS
Sbjct: 541 ---------ALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTL 591
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+S+LS CSH+G V +G+ F M + ++ CMVDLLG +GLL EAK+LI+ MP
Sbjct: 592 LSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMP 651
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
KP VIW +LL AC H N LAE+ + +++L+
Sbjct: 652 IKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELE 686
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 95/245 (38%), Gaps = 32/245 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + D+VSW +IS+ + F L++ G S A SA D
Sbjct: 310 VFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKD 369
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK-----------ALV 239
L G +H V E D VG+ LIDMY + G IE + + K +L+
Sbjct: 370 LSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSG--AIEVACSVFKTMEIKDVSSWTSLL 427
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
+ + + A F+ M RN +SW +I+ + Q G + P F
Sbjct: 428 NGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQ-GEVPIPGLELFQEMRAEGKDWPT 486
Query: 288 ---FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLID 341
V++LSGC+ G G + K ++D+ SG L A K+
Sbjct: 487 VITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQ 546
Query: 342 EMPSK 346
EMP +
Sbjct: 547 EMPKR 551
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 44/212 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + +HG V K D ++ + +DM+ K GA
Sbjct: 497 CADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGA------------------- 537
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++ L +FQ+MP+RD+ SW TMIS L HG G L F ++ G + + +
Sbjct: 538 ---LVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSV 594
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA + + G L ++V C+GI+ IQ +V +
Sbjct: 595 LSACSHAGLVVEGRSLFQKMVQ---------------------CHGIKPKIQHYGCMVDL 633
Query: 242 YAEGGSTQKADLAFELMS-RRNMISWMVLISA 272
G ++A E M + + + W L+SA
Sbjct: 634 LGRAGLLREAKELIEHMPIKPDSVIWRSLLSA 665
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 124/453 (27%), Positives = 187/453 (41%), Gaps = 107/453 (23%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSI--------FLQLIDDD----YRVFCDIGPRYLFT 51
C +++ L ++IHA LI T LIS F D Y VF I + F
Sbjct: 35 CSTMREL---KQIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNPFV 91
Query: 52 YNTMINGGVRC-------------LC---------------------VGNIKMALHLHGL 77
+NT+I G R LC +G + LHG
Sbjct: 92 WNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGR 151
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII-RL 128
V K D I + + M+V CG + A F+ M+ + W K G+I +
Sbjct: 152 VIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQA 211
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-----GFGLSSMLYATAFS 183
+F +MP+R+ VSWN+MIS R+G + L F E+ GF + S+L A A+
Sbjct: 212 QKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYL 271
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
+ E G +H +V L+ V + LIDMY KCGC E +++
Sbjct: 272 GAS-----EQGRWIHKYIVRNRFELNSIVITALIDMYCKCGC--FEEGLKV--------- 315
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVS 290
FE + + W +I + G E+ F F+
Sbjct: 316 -----------FECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIG 364
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+L+ C+HSG V K +F M + ++ CMV++LG +GLL EA+ LI +MP +
Sbjct: 365 VLTACAHSGEVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVE 424
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+IW +LL AC + N ++A+ L LD
Sbjct: 425 GDTIIWSSLLAACRKNGNVEMAKRAANCLKNLD 457
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 156/371 (42%), Gaps = 80/371 (21%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+++ +H K S + + I M+ CG V++A F M P+L W I
Sbjct: 113 SLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVIT 172
Query: 127 ----------------RLLI------------------------MFQKMPERDLVSWNTM 146
++L+ +F +MP RD VSW+TM
Sbjct: 173 ACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTM 232
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
I + +G E+ F EL G + + SA + E+G LH V
Sbjct: 233 IVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGY 292
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE-LMSRRNMIS 265
S V V + LIDMY +CG + A L FE + +R ++S
Sbjct: 293 SWIVSVNNALIDMYSRCG----------------------NVPMARLVFEGMQEKRCIVS 330
Query: 266 WMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMA 312
W +I+ + G E+ R F F+SLL CSH+G + +G+ YF+ M
Sbjct: 331 WTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMK 390
Query: 313 KFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ + ++ CMVDL G SG L +A I +MP PT ++W LLGAC SH N +LA
Sbjct: 391 RVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELA 450
Query: 369 ELVMRNLLQLD 379
E V + L +LD
Sbjct: 451 EQVKQRLNELD 461
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 89/224 (39%), Gaps = 51/224 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G+ + LHG V+K + S+ + IDM+ +CG V A
Sbjct: 271 CSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMAR-------------- 316
Query: 122 KFGIIRLLIMFQKMPE-RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
++F+ M E R +VSW +MI+ L HG G E + F E+ +G + + +
Sbjct: 317 --------LVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFIS 368
Query: 181 AFSARASVYDLEWGPHLHS---RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
A + +E G S RV H+EP ++ + GC
Sbjct: 369 LLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHY------------GC------------ 404
Query: 238 LVTMYAEGGSTQKA-DLAFELMSRRNMISWMVLISAFSQAGVLE 280
+V +Y G QKA D ++ I W L+ A S G +E
Sbjct: 405 MVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIE 448
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 50/231 (21%)
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSAR 185
RLL+ F PE D +NT++ + ++ F+E+ GF S +A A
Sbjct: 52 RLLLCF---PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAV 108
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ L G +H + + +G+ES + +G L+ MY
Sbjct: 109 ENFRSLRTGFQMHCQALK----------------------HGLESHLFVGTTLIGMYGGC 146
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK 305
G + A F+ M + N+++W +I+A C V +
Sbjct: 147 GCVEFARKVFDEMHQPNLVAWNAVITA----------------------CFRGNDVAGAR 184
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
F M +T + V + + +G L AK++ EMP + V W ++
Sbjct: 185 EIFDKMLVRNHTSWNVMLAGYIK-AGELESAKRIFSEMPHRDD-VSWSTMI 233
>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Vitis vinifera]
gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 160/362 (44%), Gaps = 58/362 (16%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
Y + C G F ++ + C +G+++ +H V K D+ + + + ++
Sbjct: 167 YEMVCQFGQLGNFAFSMALKA---CSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLY 223
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
+ G D A L +F MP R++VSWN++I+ L + F
Sbjct: 224 SEDGCFDEA----------------------LRVFDGMPHRNVVSWNSLIAGLVKKDGVF 261
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E + F + G G S + T A V L G +H+ +V D V + L+
Sbjct: 262 EAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLV 321
Query: 218 DMYLKCGC--------NGIE-SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
DMY KCG NG++ + L+T YA G +A +F+ M
Sbjct: 322 DMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEM---------- 371
Query: 269 LISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCM 323
+ S FS G+ F++LLSGCSH+G G F M K Y ++ C+
Sbjct: 372 ICSGFSPDGIT--------FIALLSGCSHAGLADDGCRLFEMM-KMDYGISPTVEHYACL 422
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383
VD+LG +G + EA +++ MP KPT IWG+LL +C H N LAE V + L +L+
Sbjct: 423 VDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNA 482
Query: 384 GS 385
G+
Sbjct: 483 GN 484
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 38/220 (17%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W M +R+G+ E L + E+ L + ++ A A + + DL+ G +H++V+
Sbjct: 146 WVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVL 205
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
D V + L+ +Y + GC + ++++ F+ M RN
Sbjct: 206 KATEDPDQVVNNALLRLYSEDGC--FDEALRV--------------------FDGMPHRN 243
Query: 263 MISWMVLISAF-SQAGVLEKPRFF---------FFFVSL---LSGCSHSGPVTKGKHYFT 309
++SW LI+ + GV E F F +V+L L C+ + GK
Sbjct: 244 VVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHA 303
Query: 310 AMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+ K T +VD+ G + +++ + M K
Sbjct: 304 VIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGK 343
>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
sativa Japonica Group]
gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 702
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 153/330 (46%), Gaps = 61/330 (18%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G+I + LH K ++D ++ + + M+ + G V+ E+ ++ NP
Sbjct: 325 GSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP--------- 375
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
DLVSW T IS ++GFG + + ++ + GF + +++ S+
Sbjct: 376 -------------DLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSC 422
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A V L+ G H + LK GC +S I G AL+ MY++
Sbjct: 423 ADVASLDQGMQFHC-------------------LALKLGC---DSEICTGNALINMYSKC 460
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
G A LAF++M ++ SW LI +Q G K F F+ +L
Sbjct: 461 GQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVL 520
Query: 293 SGCSHSGPVTKGKHYFTAM-AKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
GC+HSG V +G+ +F M ++++T ++ CM+D+LG +G EA ++I++MP +P
Sbjct: 521 MGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPD 580
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+IW LL +C H N + +L L++L
Sbjct: 581 ALIWKTLLASCKLHRNLDIGKLAADRLMEL 610
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F +MP +++V+W +++S TR+G L F ++ G + A A A +
Sbjct: 68 LDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADL 127
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L G +HS V + D ++GS LI+MY +C GS
Sbjct: 128 GALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRC----------------------GSL 165
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
A F+ M +++ + LISAF + G E
Sbjct: 166 PAAKEVFDRMDSPDVVGYTSLISAFCRNGEFE 197
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 145/382 (37%), Gaps = 79/382 (20%)
Query: 60 VRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP--- 116
V C +G ++ +H L + F D I I+M+ +CG++ A+ F RM +P
Sbjct: 122 VACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVV 181
Query: 117 ------SLFCWKFGIIRLL--IMFQKMPERDLVSWNTMISILTR---------HGFGFET 159
S FC + G L + Q + + + +TM +ILT HG+
Sbjct: 182 GYTSLISAFC-RNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGY---- 236
Query: 160 LCTFIELWNHGFGLSSML-----YATAFSARASVYD-------LEWGP--HLHSRVVHME 205
L I L + S+ L F +V+D + W L+ R +E
Sbjct: 237 LIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLE 296
Query: 206 PSLDVF------------------VGS-GLIDMYLKCGCNGIE----SSIQIGKALVTMY 242
+L VF +G+ G I + + C+ I+ + I++ AL++MY
Sbjct: 297 EALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMY 356
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF-------------FFFV 289
G ++ + + +++SW ISA Q G EK + F
Sbjct: 357 GRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFS 416
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
S+LS C+ + +G + K + C ++++ G +G A+ D M +
Sbjct: 417 SVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTH 476
Query: 347 PTCVIWGALLGACCSHYNTKLA 368
W +L+ H + A
Sbjct: 477 DV-TSWNSLIHGHAQHGDANKA 497
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 156/371 (42%), Gaps = 80/371 (21%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+++ +H K S + + I M+ CG V++A F M P+L W I
Sbjct: 121 SLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVIT 180
Query: 127 ----------------RLLI------------------------MFQKMPERDLVSWNTM 146
++L+ +F +MP RD VSW+TM
Sbjct: 181 ACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTM 240
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
I + +G E+ F EL G + + SA + E+G LH V
Sbjct: 241 IVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGY 300
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE-LMSRRNMIS 265
S V V + LIDMY +CG + A L FE + +R ++S
Sbjct: 301 SWIVSVNNALIDMYSRCG----------------------NVPMARLVFEGMQEKRCIVS 338
Query: 266 WMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMA 312
W +I+ + G E+ R F F+SLL CSH+G + +G+ YF+ M
Sbjct: 339 WTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMK 398
Query: 313 KFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ + ++ CMVDL G SG L +A I +MP PT ++W LLGAC SH N +LA
Sbjct: 399 RVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELA 458
Query: 369 ELVMRNLLQLD 379
E V + L +LD
Sbjct: 459 EQVKQRLNELD 469
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 89/224 (39%), Gaps = 51/224 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G+ + LHG V+K + S+ + IDM+ +CG V A
Sbjct: 279 CSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMAR-------------- 324
Query: 122 KFGIIRLLIMFQKMPE-RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
++F+ M E R +VSW +MI+ L HG G E + F E+ +G + + +
Sbjct: 325 --------LVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFIS 376
Query: 181 AFSARASVYDLEWGPHLHS---RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
A + +E G S RV H+EP ++ + GC
Sbjct: 377 LLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHY------------GC------------ 412
Query: 238 LVTMYAEGGSTQKA-DLAFELMSRRNMISWMVLISAFSQAGVLE 280
+V +Y G QKA D ++ I W L+ A S G +E
Sbjct: 413 MVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIE 456
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 50/231 (21%)
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSAR 185
RLL+ F PE D +NT++ + ++ F+E+ GF S +A A
Sbjct: 60 RLLLCF---PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAV 116
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ L G +H + + +G+ES + +G L+ MY
Sbjct: 117 ENFRSLRTGFQMHCQALK----------------------HGLESHLFVGTTLIGMYGGC 154
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK 305
G + A F+ M + N+++W +I+A C V +
Sbjct: 155 GCVEFARKVFDEMHQPNLVAWNAVITA----------------------CFRGNDVAGAR 192
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
F M +T + V + + +G L AK++ EMP + V W ++
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIK-AGELESAKRIFSEMPHRDD-VSWSTMI 241
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 131/266 (49%), Gaps = 39/266 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+KM ERD +W+ MI ++ F E L TF E+ G + + + A++
Sbjct: 289 VFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAV 348
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L++G +H+ ++ +DVF S LI MY+KCG + K
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG----------------------NLDK 386
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F ++++ W +I+ ++Q G+ E+ F ++ L+ CS+
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446
Query: 298 SGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G V +G+ F +M + ++ CMVDLLG SGL+ EA LI MP +P VIWG
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLD 379
AL+GAC H N ++AE + LL+L+
Sbjct: 507 ALMGACRMHRNAEIAEFAAKKLLELE 532
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 38/238 (15%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F++MP RDL S+N +IS G L A +A AS+
Sbjct: 68 LGLFRRMPSRDLASYNALIS---------------------GLSLRRQTLPDAAAALASI 106
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
P S VV L +V GL+ ++ E + L+ + G
Sbjct: 107 ------PFPPS-VVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRV 159
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSG 299
+A F+ M R++++W ++S + QAG + + R F + +++SG + +G
Sbjct: 160 NEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNG 219
Query: 300 PVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
V + F M + + +V + +G + +A +L + MP P ++G
Sbjct: 220 EVNLARKLFEVMPERNEVSWTAMLVGYIQ-AGHVEDAAELFNAMPEHPVAACNAMMVG 276
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 255 FELMSRRNMISWMVLISAFS--------QAGVLEK---PRFFFFFVSLLSGCSHSGPVTK 303
F M R++ S+ LIS S A L P F SLL G G +
Sbjct: 71 FRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLAD 130
Query: 304 GKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
F M + + Y V + LL +G + EA++L DEMP + V W A+L C
Sbjct: 131 AIRLFQQMPERNHVSYTVLLGGLLD-AGRVNEARRLFDEMPDR-DVVAWTAMLSGYCQ 186
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 34/257 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP+RD+V+W M+S + G E F E+ +++A S Y
Sbjct: 165 LFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV--------VSWTAMISGYA 216
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGI-ESSIQIGKALVTM 241
+L ++ + P + + ++ Y++ G N + E + A++
Sbjct: 217 QNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG 276
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
+ + G A FE M R+ +W +I A+ Q L + F
Sbjct: 277 FGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSV 336
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLS---GLLGEAKKLIDEMPS 345
+S+L+ C+ + G+ AM + ++ + L+ + G L +AK++
Sbjct: 337 ISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396
Query: 346 KPTCVIWGALLGACCSH 362
K V+W +++ H
Sbjct: 397 K-DIVMWNSMITGYAQH 412
>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 159/348 (45%), Gaps = 67/348 (19%)
Query: 50 FTYNTMINGGV--RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
FT +++I R C G+ LHG K F S+ + + +D++ + G +D A+
Sbjct: 153 FTLSSVIKAAAAERRGCCGH-----QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQ 207
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
++F + R+ VSWN +I+ R + L F +
Sbjct: 208 ----------------------LVFDALESRNDVSWNALIAGHARRCGTEKALELFQGML 245
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
GF S YA+ F A +S LE G +H+ ++ L F G+ L+DMY
Sbjct: 246 REGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY------- 298
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
A+ GS A F+ +++R+++SW L++A++Q G + +F
Sbjct: 299 ---------------AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFE 343
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSG 331
F+S+L+ CSHSG + +G HY+ M K ++V +VDLLG +G
Sbjct: 344 EMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAG 403
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L A + I+EMP +PT IW ALL AC H NT+L ++ +LD
Sbjct: 404 DLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELD 451
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 134/327 (40%), Gaps = 64/327 (19%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
YNT++ +C + +HG + + F D + + ++M+ KCG+++ A
Sbjct: 54 YNTLLK---KCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARK--- 107
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+F KMPERD V+W T+IS ++H F+ L F ++ GF
Sbjct: 108 -------------------VFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGF 148
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ ++ A A+ G LH V KC G +S+
Sbjct: 149 SPNEFTLSSVIKAAAAERRGCCGHQLHGFCV-------------------KC---GFDSN 186
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF----- 285
+ +G AL+ +Y G A L F+ + RN +SW LI+ ++ EK F
Sbjct: 187 VHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLR 246
Query: 286 -------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGE 335
F + SL CS +G + +GK M K ++D+ SG + +
Sbjct: 247 EGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHD 306
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSH 362
A+K+ D + +K V W +LL A H
Sbjct: 307 ARKIFDRL-AKRDVVSWNSLLTAYAQH 332
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 141/314 (44%), Gaps = 62/314 (19%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+A + +DM+ KCG++ A +F KMP R+LV+WN+MI
Sbjct: 250 LATAIVDMYAKCGSLKTARD----------------------LFNKMPHRNLVAWNSMIG 287
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
++G E L F ++ GF + A A + L G LH+ V +
Sbjct: 288 AYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTD 347
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
D +G+ L+DM YA+ G ++A F + ++++ +W
Sbjct: 348 DTAIGTALVDM----------------------YAKSGDAERAQQVFSELQKKDVTAWTS 385
Query: 269 LISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
LI + G E+ FF ++ +LS CSH G V GK++F +M
Sbjct: 386 LIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNV 445
Query: 315 ----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
T ++ CMVDLL +G LGEA++L+++MP +P IW ALL C + N +A+
Sbjct: 446 HGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADR 505
Query: 371 VMRNLLQLDVKVFG 384
V R + +L+V G
Sbjct: 506 VRRRVRELEVDGSG 519
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 124/313 (39%), Gaps = 58/313 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V + +H + K F D A + + M+ CG ++ A
Sbjct: 115 CSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAA--------------- 159
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF--IELWNHGFGLSSMLYA 179
L +F +P+ ++V+W ++I+ + E + + +ELW+ +M+
Sbjct: 160 -------LKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNV 212
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
AR+ DL G +H R M LD F + ++ L A+V
Sbjct: 213 LVACARSR--DLNAGRWVHDRTGQM--GLDPFQSNSNFNVIL-------------ATAIV 255
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
MYA+ GS + A F M RN+++W +I A++Q G + F
Sbjct: 256 DMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKA 315
Query: 287 FFVSLLSGCSHSGPVTKGK--HYFTAMAKFT-YTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
F+ ++ C+H G + G+ H + + T T +VD+ SG A+++ E+
Sbjct: 316 TFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSEL 375
Query: 344 PSKPTCVIWGALL 356
K W +L+
Sbjct: 376 QKKDVTA-WTSLI 387
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/332 (20%), Positives = 128/332 (38%), Gaps = 73/332 (21%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM--HVKCGAVDYAESA 109
YN++++ +C + +K LHGL+ + D +D + G ++YA+S
Sbjct: 5 YNSILSLLEKCKTMAELK---RLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSV 61
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F ++ PSL+ W N+MI + E L + E+
Sbjct: 62 FNQIDRPSLYIW----------------------NSMIKGYSISESPDEALTMYREMRQK 99
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G+ + A + V G +H+ +V +DV+ + L+ MY CG +E
Sbjct: 100 GYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACG--DME 157
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA-FSQAGVLEKPRFF--- 285
+++++ F+ + + N+++W LI+ S E R +
Sbjct: 158 AALKV--------------------FDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDM 197
Query: 286 ---------FFFVSLLSGCSHSGPVTKGK--HYFT---AMAKFTYTCYF-----VCMVDL 326
V++L C+ S + G+ H T + F F +VD+
Sbjct: 198 ELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDM 257
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G L A+ L ++MP + V W +++GA
Sbjct: 258 YAKCGSLKTARDLFNKMPHR-NLVAWNSMIGA 288
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 118/430 (27%), Positives = 177/430 (41%), Gaps = 79/430 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLIDDDYR-----------VFCDIGPR 47
+KAC SLP+ R IHA + IF+ LID R +F + R
Sbjct: 127 LKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEER 186
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA--KSSIDMHVKCGAVDY 105
+ T+N+MI G VRC L G K F + D + + +D + K G +D
Sbjct: 187 DVVTWNSMIGGLVRCG---------ELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDT 237
Query: 106 AESAFLRMLNPSLFCW--------KFGIIRLLIM-FQKMPERDLVSWNTMISILTRHGFG 156
A F RM ++ W K G + + M F + P +++V W T+I+ G
Sbjct: 238 AFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLA 297
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E + ++ G + +A A L G +H+ + V +
Sbjct: 298 REATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAF 357
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE----LMSRRNMISWMVLISA 272
IDMY KCGC D AF+ +M++++++SW +I
Sbjct: 358 IDMYAKCGC-------------------------LDAAFDVFSGMMAKKDVVSWNSMIQG 392
Query: 273 FSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----T 315
F+ G EK F FV LL C+H+G V +G+ YF +M K
Sbjct: 393 FAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVP 452
Query: 316 YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ CM+DLLG G L EA L+ MP +P +I G LL AC H + LA V L
Sbjct: 453 QVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQL 512
Query: 376 LQLDVKVFGS 385
+L+ G+
Sbjct: 513 FKLEPSDPGN 522
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLC--TFIELWNHGFGLSSMLYATAFSARASV 188
+F +P ++ +N++I H +L F ++ +G + Y A +
Sbjct: 75 VFNHVPHPNVHLYNSIIRAHA-HNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGP 133
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI-----------ESSIQIGKA 237
L +H+ V + D+FV + LID Y +CG G+ E + +
Sbjct: 134 SSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNS 193
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
++ G Q A F+ M R+M+SW ++ +++AG ++
Sbjct: 194 MIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMD 236
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 163/337 (48%), Gaps = 53/337 (15%)
Query: 74 LHGLVKKFYFVSDES-----IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW------- 121
+H K F ++D++ + + +DM+ KCG + A++ F R ++ W
Sbjct: 139 IHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAY 198
Query: 122 -KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
+ G I + +F +MP +++VSWN+MIS R G E L F ++ N
Sbjct: 199 AQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLV 258
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ +A + + DL G +H+ ++ + + V + + LIDMY KCG +V
Sbjct: 259 SILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG------------PVV 306
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------F 286
T D+ E M +N++SW V+I A + G LE + F
Sbjct: 307 TAL---------DIFLE-MPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEI 356
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDE 342
LLS CSHSG V G +YF M ++ CMVDLLG GLLGEA +LI
Sbjct: 357 TLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGR 416
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP KP V+WGALLGAC H N ++ + +++ LL+L+
Sbjct: 417 MPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELE 453
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 110/296 (37%), Gaps = 70/296 (23%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA---- 186
MF ++P+ + +N++I + + + F + G LS + F +A
Sbjct: 44 MFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSG--LSPNEFTLPFVLKACGCK 101
Query: 187 SVYDLEWGPHL-HSRVVHMEPSLDVFVGSGLIDMYLKCG------------CNGIESSIQ 233
S Y W L H + + VFV + LI +Y+ CG + I
Sbjct: 102 SAY---WEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDII 158
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+ ALV MYA+ G+ A F+ +N++SW +ISA++Q G +E R F
Sbjct: 159 VRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKN 218
Query: 287 -------------------------------------FFVSLLSGCSHSGPVTKGK--HY 307
VS+L+ CS G + GK H
Sbjct: 219 VVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHN 278
Query: 308 FTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ K Y + ++D+ G + A + EMP K V W ++GA H
Sbjct: 279 YILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGK-NLVSWNVIIGALALH 333
>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
Length = 656
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 153/330 (46%), Gaps = 61/330 (18%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G+I + LH K ++D ++ + + M+ + G V+ E+ ++ NP
Sbjct: 279 GSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP--------- 329
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
DLVSW T IS ++GFG + + ++ + GF + +++ S+
Sbjct: 330 -------------DLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSC 376
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A V L+ G H + LK GC +S I G AL+ MY++
Sbjct: 377 ADVASLDQGMQFHC-------------------LALKLGC---DSEICTGNALINMYSKC 414
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
G A LAF++M ++ SW LI +Q G K F F+ +L
Sbjct: 415 GQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVL 474
Query: 293 SGCSHSGPVTKGKHYFTAM-AKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
GC+HSG V +G+ +F M ++++T ++ CM+D+LG +G EA ++I++MP +P
Sbjct: 475 MGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPD 534
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+IW LL +C H N + +L L++L
Sbjct: 535 ALIWKTLLASCKLHRNLDIGKLAADRLMEL 564
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F +MP +++V+W +++S TR+G L F ++ G + A A A +
Sbjct: 68 LDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADL 127
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L G +HS V + D ++GS LI+MY +C GS
Sbjct: 128 GALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRC----------------------GSL 165
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
A F+ M +++ + LISAF + G E
Sbjct: 166 PAAKEVFDRMDSPDVVGYTSLISAFCRNGEFE 197
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/357 (20%), Positives = 130/357 (36%), Gaps = 75/357 (21%)
Query: 60 VRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
V C +G ++ +H L + F D I I+M+ +CG++ A+ F RM +P
Sbjct: 122 VACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSP--- 178
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
D+V + ++IS R+G I++ G +
Sbjct: 179 -------------------DVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMT 219
Query: 180 TAFSARASVYDLEWGPHLHSRVVHM--EPSLDVFVGSGLIDMYLK--------------- 222
T +A V G +H ++ S V+ + LID Y +
Sbjct: 220 TILTACPRVL----GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVL 275
Query: 223 --CG---------CNGIE----SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
CG C+ I+ + I++ AL++MY G ++ + + +++SW
Sbjct: 276 GACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWT 335
Query: 268 VLISAFSQAGVLEKPRFF-------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
ISA Q G EK + F S+LS C+ + +G + K
Sbjct: 336 TAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKL 395
Query: 315 ---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ C ++++ G +G A+ D M + W +L+ H + A
Sbjct: 396 GCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDV-TSWNSLIHGHAQHGDANKA 451
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/438 (27%), Positives = 180/438 (41%), Gaps = 104/438 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-IDDDY----------RVFCDIGPRYL 49
+ AC L ++IHA + C ++ F+ + D Y VF ++ R L
Sbjct: 207 LPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNL 266
Query: 50 FTYNTMINGGVR----------------------------CLCVGNIKMAL--HLHGLVK 79
++N+MI G V+ C G +++ +HG +
Sbjct: 267 VSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIV 326
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
K V + S +DM+ KCG + A LFC +RD
Sbjct: 327 KRGLVGLVYVKNSLVDMYCKCGLFEDA---------TKLFCGG-------------GDRD 364
Query: 140 LVSWNTMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+V+WN MI R FE CT+ + + G Y++ F A AS+ L G +H
Sbjct: 365 VVTWNVMIMGCFR-CRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIH 423
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
S V LK G +++S +I +LVTMY + GS A F
Sbjct: 424 SHV-------------------LKTG--HVKNS-RISSSLVTMYGKCGSMLDAYQVFRET 461
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK 305
N++ W +I+ F Q G + F FVS+LS CSH+G + G
Sbjct: 462 KEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGF 521
Query: 306 HYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
YF +MA ++ CMVDLLG G L EA + I+ MP +P ++WGALLGAC
Sbjct: 522 KYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGK 581
Query: 362 HYNTKLAELVMRNLLQLD 379
H N ++ V L +L+
Sbjct: 582 HANVEMGREVAERLFKLE 599
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
P ++V+W T+I+ L+R F+ L F + G + ++ A A L G
Sbjct: 161 PSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQ 220
Query: 196 HLHSRVVHMEPSL-DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H+ ++H L D FV + L+DMY KC GS A+
Sbjct: 221 QIHA-LIHKHCFLNDPFVATALLDMYAKC----------------------GSMLLAENV 257
Query: 255 FELMSRRNMISWMVLISAF 273
F+ M RN++SW +I F
Sbjct: 258 FDEMPHRNLVSWNSMIVGF 276
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 175/410 (42%), Gaps = 88/410 (21%)
Query: 9 SLPIARKIHAQLISTCLI---------SSIFLQLIDDDYR----------VFCDIGPRYL 49
SL R+IH + +C++ ++I I D V ++ P
Sbjct: 58 SLARVRRIHGDIFRSCILDQYPIAFLWNNIMRSYIRHDSPLDSVQVYLGMVRSNVLPDR- 116
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+T +I V+ + + + LH + + FV DE I ++ K G ++ A +
Sbjct: 117 YTLPIVIKAAVQ---IHDFPLGKQLHSVAVRLGFVGDEFCESGFITLYCKAGELENARN- 172
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F + PER L SWN +I L G E + F+E+
Sbjct: 173 ---------------------VFDENPERKLGSWNAIIGGLNHAGRANEAVEMFMEMRRS 211
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNG 227
GF + SA + DL LH V+ E DV + + LIDMY KCG
Sbjct: 212 GFEPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAKTEEKSDVMMMNSLIDMYGKCG--R 269
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF- 285
++ +IQ+ FE M +RN++SW +I+ ++ G LE F
Sbjct: 270 MDFAIQV--------------------FEEMPQRNVVSWSSMITGYAANGNTLEALECFR 309
Query: 286 -----------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT-----CYFVCMVDLLGL 329
FV +LS C H G V +GK YF AM K + ++ C+VDLL
Sbjct: 310 QMREFGVRPNKITFVGVLSACVHGGLVEEGKAYF-AMMKSEFNLEPGLSHYGCIVDLLSR 368
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
G L EAKK+++EMP KP ++WG L+G C + ++AE V +++L+
Sbjct: 369 DGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELE 418
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 88/257 (34%), Gaps = 41/257 (15%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN ++ RH +++ ++ + A ++D G LHS V
Sbjct: 84 WNNIMRSYIRHDSPLDSVQVYLGMVRSNVLPDRYTLPIVIKAAVQIHDFPLGKQLHSVAV 143
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+ D F SG I +Y K G + A F+ R
Sbjct: 144 RLGFVGDEFCESGFITLYCK----------------------AGELENARNVFDENPERK 181
Query: 263 MISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSGPVTKG--KHY 307
+ SW +I + AG E F F VS+ S C G + H
Sbjct: 182 LGSWNAIIGGLNHAGRANEAVEMFMEMRRSGFEPDDFTMVSVTSACGGLGDLNLAFQLHK 241
Query: 308 FTAMAKFTYTCYFVCM---VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
AK + M +D+ G G + A ++ +EMP + V W +++ ++ N
Sbjct: 242 CVLQAKTEEKSDVMMMNSLIDMYGKCGRMDFAIQVFEEMPQR-NVVSWSSMITGYAANGN 300
Query: 365 TKLAELVMRNLLQLDVK 381
T A R + + V+
Sbjct: 301 TLEALECFRQMREFGVR 317
>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 944
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 133/308 (43%), Gaps = 61/308 (19%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+ S +DM+ KC D AE ++F+ + +R VSW +IS
Sbjct: 382 VGNSLVDMYAKCEMFDEAE----------------------LIFKSLSQRSTVSWTALIS 419
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+ G L F ++ +AT A A L G LH+ ++
Sbjct: 420 GYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLE 479
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
+VF GSGL+DMY KCG I+ ++Q+ FE M RN +SW
Sbjct: 480 NVFSGSGLVDMYAKCGS--IKDAVQV--------------------FEEMPDRNAVSWNA 517
Query: 269 LISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKF- 314
LISA++ G E F + +L CSH G V +G +F AM+
Sbjct: 518 LISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIY 577
Query: 315 ---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
++ CM+DLLG +G EA+KL+DEMP +P ++W ++L AC + N LAE
Sbjct: 578 GITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERA 637
Query: 372 MRNLLQLD 379
L ++
Sbjct: 638 AEQLFSME 645
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 39/254 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPE D VS+N +IS ++ E+L F E+ GF + +AT S A++
Sbjct: 301 LFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSS 360
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G +H + + + VG+ L+DMY KC M+ E
Sbjct: 361 LQVGRQVHCQAIVATADSILHVGNSLVDMYAKC----------------EMFDE------ 398
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A+L F+ +S+R+ +SW LIS + Q G+ F F ++L +
Sbjct: 399 AELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAG 458
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ GK H F + + +VD+ G + +A ++ +EMP + V W A
Sbjct: 459 FASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDR-NAVSWNA 517
Query: 355 LLGACCSHYNTKLA 368
L+ A + + + A
Sbjct: 518 LISAYADNGDGEAA 531
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 39/243 (16%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F+++ ++D V++NT+I+ + G E + F+++ G S ++ A ++
Sbjct: 199 VLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLH 258
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D G LH V S D VG+ ++ Y K + L T
Sbjct: 259 DFALGQQLHGLSVTTGFSRDASVGNQILHFYSKH-----------DRVLETRN------- 300
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKP-------------RFFFFFVSLLSGCS 296
F M + +S+ V+IS++SQA E+ R F F ++LS +
Sbjct: 301 ----LFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAA 356
Query: 297 HSGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ + G+ + A+ + V +VD+ + EA +LI + S+ + V W
Sbjct: 357 NLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEA-ELIFKSLSQRSTVSWT 415
Query: 354 ALL 356
AL+
Sbjct: 416 ALI 418
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/440 (24%), Positives = 182/440 (41%), Gaps = 111/440 (25%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYLFT 51
AC ++ SL + R +H Q + C + L+D D + F +G + + +
Sbjct: 663 ACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVS 722
Query: 52 YNTMINGGVR--------------------------------CLCVGNIKMALHLHGLVK 79
+ ++I VR C C ++ +H ++
Sbjct: 723 WTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR 782
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
K ++ + +DM+ KCG++ E A+L +F ++P +D
Sbjct: 783 KNNMALCLPVSNALMDMYAKCGSM---EEAYL-------------------VFSQIPVKD 820
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSWNTMI +++ E L F E+ + A A S+ LE G +H
Sbjct: 821 IVSWNTMIGGYSKNSLPNEALKLFAEMQKESRP-DGITMACLLPACGSLAALEIGRGIHG 879
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
++ NG S + + AL+ MY + GS A L F+++
Sbjct: 880 CILR----------------------NGYSSELHVANALIDMYVKCGSLVHARLLFDMIP 917
Query: 260 RRNMISWMVLISAFSQAGV-------LEKPRFF------FFFVSLLSGCSHSGPVTKGKH 306
+++I+W V+IS G+ +K R F S+L CSHSG + +G
Sbjct: 918 EKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWG 977
Query: 307 YFTAMAKFTYTC-------YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
+F +M C ++ CMVDLL +G L +A LI+ MP KP IWGALL C
Sbjct: 978 FFNSMIS---ECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGC 1034
Query: 360 CSHYNTKLAELVMRNLLQLD 379
H++ +LAE V ++ +L+
Sbjct: 1035 RIHHDVELAEKVAEHVFELE 1054
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 126/310 (40%), Gaps = 61/310 (19%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G + +HG V K F S ++ S I + K G VD A
Sbjct: 566 LGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHK---------------- 609
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F ++ +RD+VSWN+MIS +GF L F+++ G+ + +A
Sbjct: 610 ------LFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAA 663
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A+V L G LH + V S +V + L+DMY KCG + +IQ
Sbjct: 664 CANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCG--NLNDAIQ----------- 710
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSL 291
AFE M ++ ++SW LI+A+ + G+ + F+ S+
Sbjct: 711 ---------AFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSV 761
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYT-CYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
L C+ + KG+ + K C V ++D+ G + EA + ++P K
Sbjct: 762 LHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDI 821
Query: 349 CVIWGALLGA 358
V W ++G
Sbjct: 822 -VSWNTMIGG 830
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/376 (19%), Positives = 140/376 (37%), Gaps = 92/376 (24%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGV--------------------------------R 61
+D +++F ++G R + ++N+MI+G V
Sbjct: 604 VDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAA 663
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C VG++ + LHG K F + + +DM+ KCG ++ A A
Sbjct: 664 CANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQA------------ 711
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
F+KM ++ +VSW ++I+ R G + + F E+ + G +
Sbjct: 712 ----------FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSV 761
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A L+ G +H+ + +L + V + L+DMY KC
Sbjct: 762 LHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKC------------------ 803
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFV 289
GS ++A L F + ++++SW +I +S+ + + F
Sbjct: 804 ----GSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPDGITMA 859
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLIDEMPSK 346
LL C + G+ + + Y+ ++D+ G L A+ L D +P K
Sbjct: 860 CLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEK 919
Query: 347 PTCVIWGALLGACCSH 362
+ W ++ C H
Sbjct: 920 DL-ITWTVMISGCGMH 934
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 142/314 (45%), Gaps = 47/314 (14%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERDLVSWN 144
ID + G ++ A F M + F W K G ++ +F ++P R+LV+WN
Sbjct: 94 IDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWN 153
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
++I +++GF E L F ++ N G+ + SA A + L+ G +H +
Sbjct: 154 SLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAK 213
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
L+ FV + L+DMY KC G A L FE M+ +N
Sbjct: 214 GMKLNEFVVNALVDMYAKC----------------------GDLTGARLIFERMTNKNNA 251
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
W +IS F+ G ++ FF F+S+LS C H G V G F+ M
Sbjct: 252 CWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKM 311
Query: 312 AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
++ + ++ C+VDLLG +G + +A LI MP KP +WGA LGAC H + +
Sbjct: 312 ERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFLGACRIHMDNDMV 371
Query: 369 ELVMRNLLQLDVKV 382
E V+ ++ D V
Sbjct: 372 EQVVEDVCTSDSSV 385
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 36/265 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHG-----------FGFETLCTFIELWNHGFGLSSMLYA 179
+F+ MPER++V+WN MIS ++G ++IE+ + GF S + A
Sbjct: 14 LFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMID-GFARSGDMVA 72
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
AR + ++ P VV +D + G ++ + + + + +++
Sbjct: 73 ----ARRTFNEV---PFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMI 125
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
+ Y + G+ ++A F+ + RN+++W LI +SQ G E+ F
Sbjct: 126 SGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEV 185
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEM 343
V +LS C+ + GK + AK FV +VD+ G L A+ + + M
Sbjct: 186 TVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERM 245
Query: 344 PSKPTCVIWGALLGACCSHYNTKLA 368
+K W +++ H TK A
Sbjct: 246 TNKNNAC-WNSMISGFAVHGKTKEA 269
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSL 291
MYA+ G + FE M RN+++W +IS + + G ++ F ++ +
Sbjct: 1 MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEM 60
Query: 292 LSGCSHSGPVTKGKHYFTAMA-KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
+ G + SG + + F + + + M+D G + A+ L ++MP +
Sbjct: 61 IDGFARSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQR-NFF 119
Query: 351 IWGALLGACCSHYNTKLAELV-----MRNLLQLDVKVFG 384
+W +++ C N K A + +RNL+ + + G
Sbjct: 120 VWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICG 158
>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14850-like [Cucumis sativus]
Length = 606
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/447 (25%), Positives = 185/447 (41%), Gaps = 107/447 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-----------LQLIDDDYRVFCDIGPRYL 49
+KA L+ +++HA + LI+ +F L ++D Y+VF ++ R L
Sbjct: 115 LKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNL 174
Query: 50 FTYNTMINGGV-------------RCLCVG---------------NIKMAL----HLHGL 77
T+N I+ V L VG + K+ L LHG
Sbjct: 175 ETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLHGF 234
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ + + + S++ ID + KCG V+ +E ++F +M E
Sbjct: 235 IIRSGYGQNVSVSNGLIDFYGKCGEVECSE----------------------MVFDRMGE 272
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R+ VSW+++I+ ++ + C F+ + + ++ A A + ++E+G +
Sbjct: 273 RNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSV 332
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
+ V ++FV S L+DM Y + GS A+ AF
Sbjct: 333 QALAVKACVEQNIFVASALVDM----------------------YGKCGSIDNAEQAFNA 370
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-----------FFVSL---LSGCSHSGPVTK 303
M RN++SW L+ ++ G K +VSL LS CS +G +
Sbjct: 371 MPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKT 430
Query: 304 GKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F +M K Y ++ C+VDLLG +G++ A I MP PT IWGALLGA
Sbjct: 431 GMKIFESM-KERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGA 489
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H +L +L L +LD K G+
Sbjct: 490 CRMHGKPELGKLAAEKLFELDPKDSGN 516
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSH 297
LV MYA+ A L EL R++++W LI+ Q G F +LS C
Sbjct: 48 LVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSA--LLHFSDMLSDCVR 105
Query: 298 SGPVT-----------------KGKHYFTAMAKFTYTCYFVCMV-DLLGLSGLLGEAKKL 339
T K H + C V D+ G L +A K+
Sbjct: 106 PNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKV 165
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
DEMP + W A + H + + + LL++ K
Sbjct: 166 FDEMPHR-NLETWNAYISNSVLHGRPEDSVIAFIELLRVGGK 206
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 131/482 (27%), Positives = 191/482 (39%), Gaps = 132/482 (27%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLIS--SIFLQLI-----------DDDYRVFCDIGPRY 48
+ C + +SL +++HA LI L S S+ +LI D +++F I
Sbjct: 21 QKCTNFRSL---KQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPD 77
Query: 49 LFTYNTMING--------------------GVR------------CLCVGNIKMALHLHG 76
+F +NTMI G GVR C + +K+ +HG
Sbjct: 78 IFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHG 137
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW-----------KFGI 125
V K F S+ + + I H CG + A + F + W K +
Sbjct: 138 KVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDV 197
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-------WNH---GFGLSS 175
R L F +MP +DLVSWN MI+ +HG + F E+ WN G+ LS
Sbjct: 198 ARQL--FDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSR 255
Query: 176 M---------------------LYATAFSARASVYDLEWGPHLHSRVVHME-PSLDVFVG 213
+ + SA A + DLE G +H + M L V +
Sbjct: 256 LNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLS 315
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+ LIDMY KCG IG AL F+ M +++ SW +I
Sbjct: 316 NALIDMYAKCGS--------IGNALEV--------------FQGMRKKDTSSWNSIIGGL 353
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TY 316
+ G E+ F FV++L CSH+G V +G+ YF M
Sbjct: 354 ALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPN 413
Query: 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CMVD+LG +GLL EA ID M +P +IW LLGAC H + +L LL
Sbjct: 414 IKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLL 473
Query: 377 QL 378
++
Sbjct: 474 KM 475
>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Cucumis sativus]
Length = 606
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/447 (25%), Positives = 185/447 (41%), Gaps = 107/447 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-----------LQLIDDDYRVFCDIGPRYL 49
+KA L+ +++HA + LI+ +F L ++D Y+VF ++ R L
Sbjct: 115 LKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNL 174
Query: 50 FTYNTMINGGV-------------RCLCVG---------------NIKMAL----HLHGL 77
T+N I+ V L VG + K+ L LHG
Sbjct: 175 ETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLHGF 234
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ + + + S++ ID + KCG V+ +E ++F +M E
Sbjct: 235 IIRSGYGQNVSVSNGLIDFYGKCGEVECSE----------------------MVFDRMGE 272
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R+ VSW+++I+ ++ + C F+ + + ++ A A + ++E+G +
Sbjct: 273 RNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSV 332
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
+ V ++FV S L+DM Y + GS A+ AF
Sbjct: 333 QALAVKACVEQNIFVASALVDM----------------------YGKCGSIDNAEQAFNA 370
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-----------FFVSL---LSGCSHSGPVTK 303
M RN++SW L+ ++ G K +VSL LS CS +G +
Sbjct: 371 MPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKT 430
Query: 304 GKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F +M K Y ++ C+VDLLG +G++ A I MP PT IWGALLGA
Sbjct: 431 GMKIFESM-KERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGA 489
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H +L +L L +LD K G+
Sbjct: 490 CRMHGKPELGKLAAEKLFELDPKDSGN 516
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSH 297
LV MYA+ A L EL R++++W LI+ Q G F +LS C
Sbjct: 48 LVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSA--LLHFSDMLSDCVR 105
Query: 298 SGPVT-----------------KGKHYFTAMAKFTYTCYFVCMV-DLLGLSGLLGEAKKL 339
T K H + C V D+ G L +A K+
Sbjct: 106 PNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKV 165
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
DEMP + W A + H + + + LL++ K
Sbjct: 166 FDEMPHR-NLETWNAYISNSVLHGRPEDSVIAFIELLRVGGK 206
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 158/351 (45%), Gaps = 52/351 (14%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD-----YAESAFLRMLNPSLF 119
VG++ + LHG V K D +A + IDM+ KCG D + ES+ + + + +
Sbjct: 169 VGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNAL 228
Query: 120 CWKFG----IIRLLIMFQKMPER----DLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+ L +F++ R ++VSW ++++ ++G E + F E+ + G
Sbjct: 229 VAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGI 288
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+S+ A A++ L +H R H L+ G
Sbjct: 289 EPNSVTIPCVLPAFANIAAL-----MHGRSAHC--------------FSLR---KGFHHD 326
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
I +G ALV MYA+ G + A + FE M RN++SW +I ++ G E F
Sbjct: 327 IYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQS 386
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLG 334
F +L CS +G +G+ YF M ++ CMV LLG +G L
Sbjct: 387 SKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLD 446
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+A +I++MP +P IWG+LLG+C H N LAE+ NL QL+ + G+
Sbjct: 447 DAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGN 497
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 112/268 (41%), Gaps = 30/268 (11%)
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E ++++WN ++S L R G + + + + GF + + A SA V D+ G
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQ 177
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCG-CNGI-----ESS---IQIGKALVTMYAEGGS 247
LH VV LD V + LIDMY KCG + I ESS + ALV +
Sbjct: 178 LHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQ 237
Query: 248 TQKADLAFELMSRR----NMISWMVLISAFSQAGV-LEKPRFFFFFVS------------ 290
+A F R N++SW +++ Q G LE F S
Sbjct: 238 VSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPC 297
Query: 291 LLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+L ++ + G+ H F+ F + Y +VD+ G + +A+ + + MP +
Sbjct: 298 VLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR- 356
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNL 375
V W A++G H + A + R++
Sbjct: 357 NVVSWNAMIGGYAMHGEAENAVRLFRSM 384
>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Cucumis sativus]
Length = 804
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 156/335 (46%), Gaps = 61/335 (18%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G +++ L +HG V K F+ DE + S I+M+ KCG VD A
Sbjct: 417 GELQLGLQIHGHVIKRPFM-DEYVFNSLINMYSKCGYVDLA------------------- 456
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
++F +M + +V+WN+MIS L+++G+ + + F ++ + + + + A
Sbjct: 457 ---YMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQAC 513
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ + LE G +H +++ CG + I I ALV MYA+
Sbjct: 514 SHLGFLEKGKWIHHKLI-------------------TCG---VRKCIFIETALVDMYAKC 551
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
G Q A F+ MS R+++SW LIS++ G + + F F +++L
Sbjct: 552 GDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVL 611
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
S CSH+G V +G +F +M F +FVC+VDLL +G L EA ++I MP P
Sbjct: 612 SACSHAGCVKEGMLFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGA 671
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWGALL C H +A+ + R L + G
Sbjct: 672 SIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTG 706
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 40/260 (15%)
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R + WNT+IS+ + G ET+ F+ + GF S A++ SA + +L+ G +
Sbjct: 366 RGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQI 425
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H V+ P +D +V + LI+MY KCG + A + F+
Sbjct: 426 HGHVIK-RPFMDEYVFNSLINMYSKCGYVDL----------------------AYMIFDQ 462
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M + +++W +IS SQ G K F FVS++ CSH G + KG
Sbjct: 463 MEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKG 522
Query: 305 KH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K + + C F+ +VD+ G L A+++ D M S+ + V W +L+ +
Sbjct: 523 KWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFDNM-SERSVVSWSSLISSYGV 581
Query: 362 HYNTKLAELVMRNLLQLDVK 381
H + +L+ +K
Sbjct: 582 HGQISEVIFLFSKMLESGIK 601
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 130/333 (39%), Gaps = 94/333 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLI----------STCLISSIFLQL--IDDDYRVFCDIGPRY 48
++AC L + +++H ++I +T L+S ++ +L +D +VF ++ R
Sbjct: 106 LRACSGFGDLGVGQRVHGRIIKSGFDMDPVVNTALLS-VYGELGYLDSARKVFGEMPLRD 164
Query: 49 LFTY---------NTMINGGV---RCLC--------------------VGNIKMALHLHG 76
L ++ N IN G+ RC+ +G +++A HG
Sbjct: 165 LVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHG 224
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
+ K +D + S I M+ KCG++ AE I+F+ +
Sbjct: 225 YILKRGIENDRFVDSSLIFMYAKCGSLRSAE----------------------IVFENVT 262
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
R +W MIS G+ E L F+ + +S+ + ++ L G
Sbjct: 263 YRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKS 322
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H V+ + +D L C +G L+ +YA +T K DL +
Sbjct: 323 VHCVVIKND-----------LDANLDC----------LGPTLLELYA---ATAKHDLCEK 358
Query: 257 LMSR---RNMISWMVLISAFSQAGVLEKPRFFF 286
++ R + W LIS ++Q G+L++ F
Sbjct: 359 ILHEIGGRGIAVWNTLISVYAQKGLLKETVDLF 391
>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g69350, mitochondrial-like
[Cucumis sativus]
Length = 804
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 156/335 (46%), Gaps = 61/335 (18%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G +++ L +HG V K F+ DE + S I+M+ KCG VD A
Sbjct: 417 GELQLGLQIHGHVIKRPFM-DEYVFNSLINMYSKCGYVDLA------------------- 456
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
++F +M + +V+WN+MIS L+++G+ + + F ++ + + + + A
Sbjct: 457 ---YMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQAC 513
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ + LE G +H +++ CG + I I ALV MYA+
Sbjct: 514 SHLGFLEKGKWIHHKLI-------------------TCG---VRKCIFIETALVDMYAKC 551
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
G Q A F+ MS R+++SW LIS++ G + + F F +++L
Sbjct: 552 GDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVL 611
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
S CSH+G V +G +F +M F +FVC+VDLL +G L EA ++I MP P
Sbjct: 612 SACSHAGCVKEGMLFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGA 671
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWGALL C H +A+ + R L + G
Sbjct: 672 SIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTG 706
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 40/260 (15%)
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R + WNT+IS+ + G ET+ F+ + GF S A++ SA + +L+ G +
Sbjct: 366 RGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQI 425
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H V+ P +D +V + LI+MY KCG + A + F+
Sbjct: 426 HGHVIK-RPFMDEYVFNSLINMYSKCGYVDL----------------------AYMIFDQ 462
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M + +++W +IS SQ G K F FVS++ CSH G + KG
Sbjct: 463 MEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKG 522
Query: 305 KH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K + + C F+ +VD+ G L A+++ D M S+ + V W +L+ +
Sbjct: 523 KWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFDNM-SERSVVSWSSLISSYGV 581
Query: 362 HYNTKLAELVMRNLLQLDVK 381
H + +L+ +K
Sbjct: 582 HGQISEVIFLFSKMLESGIK 601
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 130/333 (39%), Gaps = 94/333 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLI----------STCLISSIFLQL--IDDDYRVFCDIGPRY 48
++AC L + +++H ++I +T L+S ++ +L +D +VF ++ R
Sbjct: 106 LRACSGFGDLGVGQRVHGRIIKSGFDMDPVVNTALLS-VYGELGYLDSARKVFGEMPLRD 164
Query: 49 LFTY---------NTMINGGV---RCLC--------------------VGNIKMALHLHG 76
L ++ N IN G+ RC+ +G +++A HG
Sbjct: 165 LVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHG 224
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
+ K +D + S I M+ KCG++ AE I+F+ +
Sbjct: 225 YILKRGIENDRFVDSSLIFMYAKCGSLRSAE----------------------IVFENVT 262
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
R +W MIS G+ E L F+ + +S+ + ++ L G
Sbjct: 263 YRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKS 322
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H V+ + +D L C +G L+ +YA +T K DL +
Sbjct: 323 VHCVVIKND-----------LDANLDC----------LGPTLLELYA---ATAKHDLCEK 358
Query: 257 LMSR---RNMISWMVLISAFSQAGVLEKPRFFF 286
++ R + W LIS ++Q G+L++ F
Sbjct: 359 ILHEIGGRGIAVWNTLISVYAQKGLLKETVDLF 391
>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
Length = 899
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/448 (26%), Positives = 184/448 (41%), Gaps = 110/448 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPR-- 47
M +C + LP A +IHA ++++ S LQ+ +D + +F ++ R
Sbjct: 333 MDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSN 392
Query: 48 YLFTYNTMING--------------------GVR------------CLCVGNIKMALHLH 75
T+N MI+G GVR C + ++ LH
Sbjct: 393 NAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLH 452
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM 135
+ + + +++ + I+M+ KCG++D A + F KM
Sbjct: 453 ARIL-LENIHEANLSNAVINMYGKCGSLDEA----------------------MDEFAKM 489
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
PERD+VSWNTMI+ +HG G + L F ++ G+ Y A A SV L G
Sbjct: 490 PERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAIDACGSVPSLALGK 549
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+HS V P L+ G + ALVTMYA GS A F
Sbjct: 550 TIHSIVATAAPCLEQDPG--------------------VATALVTMYARCGSLHDAKSVF 589
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVT 302
RN+++W LI+A +Q G + F F +L++ CS G V
Sbjct: 590 WRSHSRNLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVK 649
Query: 303 KGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
G YF +M + Y+ +F MVDLLG +G L EA+++ M P + LLG
Sbjct: 650 DGVFYFVSMVE-DYSIPASEDHFGGMVDLLGRAGWLEEAEQV---MRKNPCALAHAVLLG 705
Query: 358 ACCSHYNTKLAELVMRNLLQLDVKVFGS 385
AC H + + + ++ L+LD K S
Sbjct: 706 ACHVHGDVERGIRIAQSALELDWKNSAS 733
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 113/255 (44%), Gaps = 41/255 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTF--IELWNHGFGLSSMLYATAFSARASV 188
+F+++PER+LVSWN +I+ ++G + + F ++L + + + + A +++
Sbjct: 183 VFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDL-DGSVRPNDATFVSVVDACSNL 241
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
DL G H R++ G +S + +G +LV MY + GS
Sbjct: 242 LDLPRGKSTHERIIR----------------------TGFDSYLFVGNSLVNMYGKCGSV 279
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-----------FVSLLSGCSH 297
+A L FE MS RN++SW V+I A++Q G + + F + F++++ C
Sbjct: 280 DRARLVFEKMSSRNVVSWTVMIWAYAQQGFI-RAAFDLYKRMDCEPNAVTFMAVMDSCLR 338
Query: 298 SGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP-TCVIWG 353
+ + + M + VC+V + G G + A + + + + V W
Sbjct: 339 PEDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWN 398
Query: 354 ALLGACCSHYNTKLA 368
A++ H +K A
Sbjct: 399 AMISGLAQHGESKQA 413
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 106/246 (43%), Gaps = 44/246 (17%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F+ +P ++ SW +I+ + G E L F ++ G + +++T +A +S
Sbjct: 81 LEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSA 140
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L G +H V G+E+ + +G A+V +Y + G
Sbjct: 141 GALNEGKAIHDCAV----------------------LAGMETQV-VGNAIVNLYGKCGRV 177
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSG 294
+A FE + RN++SW LI+A +Q G + F FVS++
Sbjct: 178 HEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDA 237
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCY-FV--CMVDLLGLSGLLGEAKKLIDEMPSKP---- 347
CS+ + +GK + + + Y FV +V++ G G + A+ + ++M S+
Sbjct: 238 CSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSW 297
Query: 348 TCVIWG 353
T +IW
Sbjct: 298 TVMIWA 303
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 22/178 (12%)
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
L GC G+ IQ L+ MYA+ G + A FEL+ N+ SW LI+A+++ G L
Sbjct: 53 LSSGC-GVNRYIQ--NHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLR 109
Query: 281 --------------KPRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVCMV 324
KP F F ++L+ CS +G + +GK H +A +V
Sbjct: 110 EVLGLFRKMQLDGTKPD-AFVFSTVLTACSSAGALNEGKAIHDCAVLAGMETQVVGNAIV 168
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
+L G G + EAK + + +P + V W AL+ A + + K A V +L+ LD V
Sbjct: 169 NLYGKCGRVHEAKAVFERLPER-NLVSWNALIAANAQNGHCKDAMQVF-HLMDLDGSV 224
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 109/298 (36%), Gaps = 67/298 (22%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+ S ++M+ KCG+VD R ++F+KM R++VSW MI
Sbjct: 265 VGNSLVNMYGKCGSVD----------------------RARLVFEKMSSRNVVSWTVMIW 302
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+ GF + + +++ + + DL +H+ +V
Sbjct: 303 AYAQQGFIRAAFDLYKRM---DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMV------ 353
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR--NMISW 266
+G +S + LVTMY + GS A FE + R N ++W
Sbjct: 354 ----------------ASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTW 397
Query: 267 MVLISAFSQAG----VLE----------KPRFFFFFVSLLSGCSHSGPVTKGK--HYFTA 310
+IS +Q G LE +P + S L CS +T+G+ H
Sbjct: 398 NAMISGLAQHGESKQALECFWKMELEGVRPNSVTYLAS-LEACSSLNDLTRGRQLHARIL 456
Query: 311 MAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ ++++ G G L EA +MP + V W ++ H + + A
Sbjct: 457 LENIHEANLSNAVINMYGKCGSLDEAMDEFAKMPERDV-VSWNTMIATYAQHGSGRQA 513
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 148/335 (44%), Gaps = 50/335 (14%)
Query: 78 VKKFYFVSDESIA--KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI----- 130
+K ++ + + + ID ++KCG ++ A+ F +M ++ W I L
Sbjct: 186 ARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLG 245
Query: 131 ----MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F +M ERD +SW++M+ G E L F ++ + ++ +A +
Sbjct: 246 DARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACS 305
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
++ ++ G +H+ + LD +G+ L+DMY KC G
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKC----------------------G 343
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
FE M R + +W +I + G E F V +L+
Sbjct: 344 RLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLT 403
Query: 294 GCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
C+H+G V KG F M +F ++ CMVDLLG SGL EA+ LI+ MP KP
Sbjct: 404 ACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNA 463
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+WGALLGAC H N LAE V + LL+L+ + G
Sbjct: 464 AVWGALLGACRIHGNFDLAERVGKILLELEPQNSG 498
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 133/335 (39%), Gaps = 57/335 (17%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGA------VDYAESAFLRMLNPSLFCWKFGII 126
LHGLV + D ++ + + KC A D+A F + NP++F W +I
Sbjct: 51 QLHGLVLRSGHFQDHYVSGALL----KCYANPHFSNFDFALKVFSSIPNPNVFIWNI-VI 105
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETL---CTFIE-----------LWNHGFG 172
+ + K+ + + + M+ + F + TL C+ + + HG G
Sbjct: 106 KGCLENNKL-FKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIG 164
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGI 228
+ + AS LE +R + DV + +ID YLKCG G+
Sbjct: 165 SDVHIKSAGIHMYASFGRLE-----DARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGL 219
Query: 229 ESSIQIG-----KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP- 282
+ + + ++ A+GG+ A F+ MS R+ ISW ++ + AG ++
Sbjct: 220 FAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEAL 279
Query: 283 RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLL 327
F F S+L+ CS+ G + +G+ + + + V ++D+
Sbjct: 280 EIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMY 339
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G L ++ +EM + W A++G H
Sbjct: 340 AKCGRLDMGWEVFEEMKER-EIFTWNAMIGGLAIH 373
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 47/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++ + HG + K E + +DM+ K G + A F M S+ W
Sbjct: 128 CARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSW 187
Query: 122 KF---GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGF 171
G+IR ++F +MPER+ V+W MI+ G E+ E+ ++
Sbjct: 188 TVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEM 247
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
L+ + + +A + DL G +H+ + + E +
Sbjct: 248 ELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEK---------------------ELN 286
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK-----PRFF- 285
I +G A+V MYA+ G A F+ M +RN++SW ++S + G+ P+ F
Sbjct: 287 IMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFK 346
Query: 286 ------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGE 335
F S+LS CSHSG V +G YF + ++ CMVDLLG +G L E
Sbjct: 347 EAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEE 406
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A+ L+ EMP +P V+ G+LLG+C H +L E +++ L+QLD
Sbjct: 407 AEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLD 450
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 106/263 (40%), Gaps = 34/263 (12%)
Query: 131 MFQKMPE--RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F ++P +D V W T++ RH E L F+E+ G + F A +
Sbjct: 72 VFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARL 131
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI---QIGKALVT----- 240
D+ G H +V M + ++DMY K G G + G+++V+
Sbjct: 132 GDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVIL 191
Query: 241 ---MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV--------------LEKPR 283
+ +EG + + F+ M RN ++W ++I+ + +G+ LE
Sbjct: 192 DGVIRSEG--VRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMEL 249
Query: 284 FFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKL 339
+ S+L+ CS SG + G+ H + K V MVD+ G + A K
Sbjct: 250 NYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKF 309
Query: 340 IDEMPSKPTCVIWGALLGACCSH 362
+MP + V W A+L H
Sbjct: 310 FKKMPQR-NVVSWNAMLSGLAMH 331
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 183/445 (41%), Gaps = 104/445 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID--------DDYRVFCDIGP-RYL 49
+KAC + + R++H+ LI + S FL LID DD R+ + P R +
Sbjct: 219 LKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDM 278
Query: 50 FTYNTMING----------------------GVRCLCVGNI----------KMALHLHGL 77
+N +I+G G + + M +H L
Sbjct: 279 IAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHAL 338
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K F D + S ID + KCG V+ A +F++ P
Sbjct: 339 SLKSGFEFDNYVVNSLIDTYGKCGHVEDATR----------------------VFEESPI 376
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
DLV + ++++ + G G E L ++E+ + G S + ++ +A AS+ E G +
Sbjct: 377 VDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQV 436
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H ++ G S I G +LV MYA+ GS + A AF
Sbjct: 437 HVHILKF----------------------GFMSDIFAGNSLVNMYAKCGSIEDASCAFSR 474
Query: 258 MSRRNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSGCSHSGPVTKG 304
+ R ++SW +I +Q G ++ P VS+L C+H+G V +
Sbjct: 475 IPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEA 534
Query: 305 KHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
KHYF +M ++ CM+DLLG +G L A +L+++MP + ++WGALLGA
Sbjct: 535 KHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAAR 594
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
H N L E LL L+ + G+
Sbjct: 595 IHKNIDLGEQAAEMLLALEPEKSGT 619
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 123/311 (39%), Gaps = 63/311 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F+ ++MIN C + + +HG + K + SD A + +DM+ K G ++ A S
Sbjct: 112 FSLSSMIN---VCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSV 168
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F + P D+VSWN +I+ H + L E+
Sbjct: 169 FDEIAKP----------------------DIVSWNAIIAGCVLHEYHHRALELLREMNKS 206
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + ++A A A + E G LHS ++ M+ D F+G GLIDMY KC
Sbjct: 207 GMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKC------ 260
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
S A L F+LM R+MI+W +IS SQ E+ F
Sbjct: 261 ----------------NSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLM 304
Query: 287 ------FFVSLLSGCSHSGPVTKGK------HYFTAMAKFTYTCYFV-CMVDLLGLSGLL 333
F + LS S + H + + F + Y V ++D G G +
Sbjct: 305 HTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHV 364
Query: 334 GEAKKLIDEMP 344
+A ++ +E P
Sbjct: 365 EDATRVFEESP 375
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 44/211 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C ++ + +HG+V F SDE +A S + ++ KCG
Sbjct: 20 CTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG------------------- 60
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
FG R L F +P+R +VSWN + S E + F ++ G + ++
Sbjct: 61 -FGDARSL--FDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSM 117
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ + D G +H ++ + D F + L+DMY K G
Sbjct: 118 INVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGI---------------- 161
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISA 272
+ A F+ +++ +++SW +I+
Sbjct: 162 ------LEDASSVFDEIAKPDIVSWNAIIAG 186
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 84/219 (38%), Gaps = 40/219 (18%)
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + + + A DL G +H VV D FV + L+ +Y KCG G
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF--- 285
S+ F+ + R+++SW L S + + + E F
Sbjct: 65 RSL----------------------FDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDM 102
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLL 333
F S+++ C+ +G+ + K Y +VD+ G+L
Sbjct: 103 VLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGIL 162
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH-YNTKLAELV 371
+A + DE+ +KP V W A++ C H Y+ + EL+
Sbjct: 163 EDASSVFDEI-AKPDIVSWNAIIAGCVLHEYHHRALELL 200
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/451 (24%), Positives = 189/451 (41%), Gaps = 95/451 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+KAC L+ A ++ L S +F+ ++D R+F R L
Sbjct: 132 LKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDL 191
Query: 50 FTYNTMINGGVR----------------------------------CLCVGNIKMALHLH 75
++NT+I G VR C + ++++ LH
Sbjct: 192 VSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLH 251
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR 127
G V + + +DM++KCG+++ A+S F R+ + ++ W KFG++
Sbjct: 252 GFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMD 311
Query: 128 -LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F +MPERD+ WN +++ + E L F E+ + +A +
Sbjct: 312 DARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACS 371
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ LE G +H + V +G+ LIDMY K C IE +I I
Sbjct: 372 QLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAK--CGNIEKAIHI------------ 417
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAG--------------VLEKPRFFFFFVSLL 292
F+ + +N ++W +I + G + +KP F + +L
Sbjct: 418 --------FKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITF-IGVL 468
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
S C H+G V +G+ +F+ M + ++ CM+DLLG +G L EA++L++ MP +P
Sbjct: 469 SACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPD 528
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
V+WGA+ AC N L E L+++D
Sbjct: 529 AVVWGAIFFACRMQGNISLGEKAAMKLVEID 559
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 160/370 (43%), Gaps = 76/370 (20%)
Query: 42 CDIGPRYLFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESI 89
CD G R +N M+ G C + ++ + +H + K ++ +
Sbjct: 513 CDTGLR---IFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFV 569
Query: 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISI 149
+ +DM+ K ++ AE+ F R++ +RDL +W +++
Sbjct: 570 GTALVDMYAKNRFLEDAETIFNRLI----------------------KRDLFAWTVIVAG 607
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ G G + + FI++ G + A++ S + + L+ G LHS + S D
Sbjct: 608 YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGD 667
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
+FV S L+DMY KCGC + A++ F+ + R+ +SW +
Sbjct: 668 MFVASALVDMYAKCGC----------------------VEDAEVVFDGLVSRDTVSWNTI 705
Query: 270 ISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK--- 313
I +SQ G K F F+ +LS CSH G + +GK +F +++K
Sbjct: 706 ICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYG 765
Query: 314 FTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
T T ++ CMVD+LG +G E + I+EM +IW +LGAC H N + E
Sbjct: 766 ITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAA 825
Query: 373 RNLLQLDVKV 382
L +L+ ++
Sbjct: 826 MKLFELEPEI 835
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 134/311 (43%), Gaps = 61/311 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G++ +HG V K D + S ++++ KCG+ +YA C
Sbjct: 138 CASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYA-------------CK 184
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
FG ++PERD+VSW +I+ G+G + F E+ G + YATA
Sbjct: 185 VFG---------EIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATA 235
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + DLE+G +H+ + + D+FVGS L+D+Y KC
Sbjct: 236 LKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKC------------------ 277
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFF 288
G A+ F M ++N +SW L++ F+Q G EK F F
Sbjct: 278 ----GEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTL 333
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPS 345
++L GC++SG + G+ + + F+ C+VD+ GL G+A K+ +
Sbjct: 334 STVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI-E 392
Query: 346 KPTCVIWGALL 356
P V W A++
Sbjct: 393 DPDVVSWSAII 403
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 123/311 (39%), Gaps = 65/311 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT +T++ G C GN++ +H L + DE I+ +DM+ KCG A
Sbjct: 331 FTLSTVLKG---CANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKV 387
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F+R+ +P D+VSW+ +I+ L + G E F + +
Sbjct: 388 FVRIEDP----------------------DVVSWSAIITCLDQKGQSREAAEVFKRMRHS 425
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN-GI 228
G + A+ SA + DL +G +H+ C C G
Sbjct: 426 GVIPNQFTLASLVSAATDLGDLYYGESIHA-----------------------CVCKYGF 462
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF-- 285
E + ALVTMY + GS Q FE + R++ISW L+S F + R F
Sbjct: 463 EYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQ 522
Query: 286 ----------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY-FV--CMVDLLGLSGL 332
+ F+S+L CS V GK + K + FV +VD+ +
Sbjct: 523 MLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRF 582
Query: 333 LGEAKKLIDEM 343
L +A+ + + +
Sbjct: 583 LEDAETIFNRL 593
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 129/314 (41%), Gaps = 61/314 (19%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G++ +H V K+ F D ++ + + M++K G+V
Sbjct: 444 LGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDG------------------ 485
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F+ RDL+SWN ++S + L F ++ GF + + + +
Sbjct: 486 ----CRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRS 541
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+S+ D++ G +H+++V + FVG+ L+D MYA+
Sbjct: 542 CSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVD----------------------MYAK 579
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSL 291
+ A+ F + +R++ +W V+++ ++Q G EK + F F S
Sbjct: 580 NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 639
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
LSGCS + G+ + K + FV +VD+ G + +A+ + D + S+ T
Sbjct: 640 LSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 699
Query: 349 CVIWGALLGACCSH 362
V W ++ H
Sbjct: 700 -VSWNTIICGYSQH 712
>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Glycine max]
Length = 770
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 149/336 (44%), Gaps = 63/336 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G ++ +H +KF F D +A S I+++ KCG ++ ++
Sbjct: 426 CAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKH------------- 472
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F K+PE D+V WN+M++ + + G + L F ++ GF S +AT
Sbjct: 473 ---------VFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATV 523
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
S+ A + L G H+++V D+FVGS LI+MY KC
Sbjct: 524 VSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKC------------------ 565
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG--------------VLEKPRFFFF 287
G A F++M RN ++W +I ++Q G EKP +
Sbjct: 566 ----GDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITY 621
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
V++L+ CSHS V +G F AM + ++ C++D L +G E + ++D M
Sbjct: 622 -VAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAM 680
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P K V+W +L +C H N LA+ L +LD
Sbjct: 681 PCKDDAVVWEVVLSSCRIHANLSLAKRAAEELYRLD 716
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 9/163 (5%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK-----FGIIRL 128
+H + + SD ++ I+++ KC + A F + + ++F W + R
Sbjct: 28 VHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCKARN 87
Query: 129 LI----MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
L +F +MP+R+ VS NT+IS + R G+ + L T+ + G S + +AT FSA
Sbjct: 88 LQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATVFSA 147
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
S+ D + G H V+ + +++V + L+ MY KCG N
Sbjct: 148 CGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNA 190
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 100/255 (39%), Gaps = 57/255 (22%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
HG+V K S+ + + + M+ KCG LN L +F+
Sbjct: 161 HGVVIKVGLESNIYVVNALLCMYAKCG------------LNADA----------LRVFRD 198
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF-----GLSSMLYATAFSARASVY 189
+PE + V++ TM+ L + E F + G LSSML A R
Sbjct: 199 IPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGER---- 254
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ GP H + + G + + +K G E + + +L+ MYA+ G
Sbjct: 255 --DVGP-CHGISTNAQ-------GKQMHTLSVKLG---FERDLHLCNSLLDMYAKIGDMD 301
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
A+ F ++R +++SW ++I+ + EK + ++++L+ C
Sbjct: 302 SAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACV 361
Query: 297 HSGPVTKGKHYFTAM 311
SG V G+ F M
Sbjct: 362 KSGDVRTGRQIFDCM 376
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 165/360 (45%), Gaps = 69/360 (19%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
+++F + R L ++N+MI+G V+C G ++ A L + VS ++ ID +
Sbjct: 247 WQLFAKMPERDLISWNSMIDGCVKC---GRMEDAQGLFDRMPNRDIVSWANM----IDGY 299
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
K G VD A S +F +MPERD+V++N M+ ++G+
Sbjct: 300 AKNGRVDIARS----------------------LFDEMPERDVVAYNAMMGGYVQNGYCM 337
Query: 158 ETLCTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L F + + G F L + A SA A + ++ G +H + + SLD +G L
Sbjct: 338 EALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVAL 397
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
IDMY KC GS + A + FE + +++ W +I +
Sbjct: 398 IDMYSKC----------------------GSIENAMMVFENIKEKSVDHWNAIIGGLAIH 435
Query: 277 GVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYT----CY 319
G+ E F F+ LL+ C H+G V +G F M + +
Sbjct: 436 GLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQH 495
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ CMVD+LG +G + EAK ++EMP +P VIW +LL AC +H + + + V NL++LD
Sbjct: 496 YGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLD 555
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 23/186 (12%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI--QIGK-------ALVTMYAE 244
G +H + +E D+F+ + LI Y+KCGC S + ++ K +++ Y +
Sbjct: 146 GMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVK 205
Query: 245 GGSTQKADLAFEL--MSRRNMISWMVLISAFSQA--GVLEKPRFF--------FFFVSLL 292
GG A + F+ + RN+ISW LI ++Q+ G+L + F + S++
Sbjct: 206 GGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMI 265
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
GC G + + F M + M+D +G + A+ L DEMP + V +
Sbjct: 266 DGCVKCGRMEDAQGLFDRMPNRDIVSW-ANMIDGYAKNGRVDIARSLFDEMPER-DVVAY 323
Query: 353 GALLGA 358
A++G
Sbjct: 324 NAMMGG 329
>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1134
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 143/327 (43%), Gaps = 64/327 (19%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L+ K+ D +I + + + KC ++ E I+F
Sbjct: 680 QIHALILKYSVADDNAIENALLAFYGKCEQMEDCE----------------------IIF 717
Query: 133 QKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
+M ER D VSWN+MIS G + + + G L +AT SA ASV L
Sbjct: 718 SRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATL 777
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
E G +H+ V DV VGS L+DMY KC G A
Sbjct: 778 ERGMEVHACAVRACLESDVVVGSALVDMYAKC----------------------GKIDYA 815
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHS 298
FELM RN+ SW +IS +++ G +K F FV +LS CSH
Sbjct: 816 SRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHV 875
Query: 299 GPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G V +G +F +M + +F CMVDLLG +G + + + I MP P +IW
Sbjct: 876 GLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRT 935
Query: 355 LLGACC--SHYNTKLAELVMRNLLQLD 379
+LGACC + NT+L + + L++L+
Sbjct: 936 VLGACCRANGRNTELGQRAAKMLIELE 962
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 30/178 (16%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T+++ C V ++ + +H + SD + + +DM+ KCG +DYA
Sbjct: 762 FTFATVLSA---CASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASR- 817
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F+ MP R++ SWN+MIS RHG G + L F + H
Sbjct: 818 ---------------------FFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQH 856
Query: 170 GFGLSSMLYATAFSARASVYDLEWG-PHLHS--RVVHMEPSLDVFVGSGLIDMYLKCG 224
G + + SA + V ++ G H S V + P ++ F S ++D+ + G
Sbjct: 857 GQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHF--SCMVDLLGRAG 912
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/319 (18%), Positives = 120/319 (37%), Gaps = 63/319 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + +HG K+ D S++ + + ++ + +++ + F
Sbjct: 567 CSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFF---------- 616
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG-FETLCTFIELWNHGFGLSSMLYAT 180
+MPE D VSWN+ I L ++ + L F+E+ G+ + + +
Sbjct: 617 ------------QMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFIN 664
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+A +S L G +H+ ++ + D + + L+ Y KC
Sbjct: 665 ILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKC----------------- 707
Query: 241 MYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAGVLEKPRFF-------------F 286
+ ++ F MS RR+ +SW +IS + +G+L K F
Sbjct: 708 -----EQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGF 762
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEM 343
F ++LS C+ + +G + V +VD+ G + A + + M
Sbjct: 763 TFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELM 822
Query: 344 PSKPTCVIWGALLGACCSH 362
P + W +++ H
Sbjct: 823 PVR-NIYSWNSMISGYARH 840
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 46/201 (22%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
SI + ++M+ KC A+D A S +FQ MP +D VSWN+MI
Sbjct: 492 SIGNALVNMYGKCTAIDNACS----------------------VFQLMPSKDTVSWNSMI 529
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
S L + E + F + +G S+ + S+ +S+ L G +H
Sbjct: 530 SGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIH--------- 580
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
G G G++ + + AL+T+YAE S + F M + +SW
Sbjct: 581 -----GEGFK--------WGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWN 627
Query: 268 VLISAFS--QAGVLEKPRFFF 286
I A + +A VL+ ++F
Sbjct: 628 SFIGALAKYEASVLQALKYFL 648
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 166/417 (39%), Gaps = 72/417 (17%)
Query: 2 KACGSLKSLPIARKIHAQL-----ISTCLISSIFLQL-------IDDDYRVFCDIGPRYL 49
+ CGS + + +IHA + +S ++S++ + + IDD +RVF +I R
Sbjct: 252 QQCGS-TGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNS 310
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVK----KFYFVSDE----SIAKSSIDMHVKCG 101
T+N++I+ R G+ A L +++ + +E S+ ++ + CG
Sbjct: 311 VTWNSIISVYCR---RGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSL-ADCG 366
Query: 102 AV-------DYAESAFLRMLN-PSLFCWKFGIIRLL----IMFQKMPERDLVSWNTMISI 149
V +S FLR L S F L+ ++F++M +R+ V+ N ++
Sbjct: 367 LVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVG 426
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
L R G E F E+ + ++S S +L+ G + VH
Sbjct: 427 LARQHQGEEAAKVFKEMKDL-VEINSESLVVLLSTFTEFSNLKEGKR-KGQEVHA----- 479
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
SGL+D + I IG ALV MY + + A F+LM ++ +SW +
Sbjct: 480 YLFRSGLVD-----------ARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSM 528
Query: 270 ISAFSQAGVLEKP-------------RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY 316
IS E+ F +S LS CS G +T G+ K+
Sbjct: 529 ISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGL 588
Query: 317 TCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
LL L + + E +K+ +MP V W + +GA + + L L
Sbjct: 589 DLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQ-VSWNSFIGALAKYEASVLQAL 644
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 45/209 (21%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
A HLH + K F D + I+++V+ G + A
Sbjct: 159 ANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARK---------------------- 196
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASV 188
+F +MP+++LVSW+ +IS T++ E F + + G + +A A +
Sbjct: 197 LFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGS 256
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
++ G +H+ + + D+ + + L+ MY C GS
Sbjct: 257 TGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDC---------------------SGSI 295
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG 277
A F+ + RN ++W +IS + + G
Sbjct: 296 DDAHRVFDEIKFRNSVTWNSIISVYCRRG 324
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 32/190 (16%)
Query: 198 HSRVVHMEPSLDVF-VGSGLID---MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
HS++ ++ D + S L D ++L+ G + L+ +Y G+ A
Sbjct: 137 HSQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARK 196
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV-------------SLLSGCSHSGP 300
F+ M ++N++SW LIS ++Q + ++ F V S L C G
Sbjct: 197 LFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGS 256
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLL----------GLSGLLGEAKKLIDEMPSKPTCV 350
M + C C+ D++ SG + +A ++ DE+ + + V
Sbjct: 257 TG----IKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNS-V 311
Query: 351 IWGALLGACC 360
W +++ C
Sbjct: 312 TWNSIISVYC 321
>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
Length = 564
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 147/324 (45%), Gaps = 63/324 (19%)
Query: 66 GNIKMALHLHGLVKKF-YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
G+ + A +H V++ + V D + +DM+ K +D A+
Sbjct: 283 GDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQ----------------- 325
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFS 183
++F +P+RD+VSWNT+I+ ++G E + + ++ NH G + +
Sbjct: 326 -----MVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILP 380
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A +++ L+ G +H+ + +LDV+V + LID+Y KCG
Sbjct: 381 AYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCG------------------- 421
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
+A L FE M RR+ W +I+ G K F FVS
Sbjct: 422 ---KLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVS 478
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
LL+ CSH+G V +G+ +F M ++ CMVD+LG +G L EA + I MP K
Sbjct: 479 LLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAFEFIQGMPIK 538
Query: 347 PTCVIWGALLGACCSHYNTKLAEL 370
P +WGALLGAC H N +LA +
Sbjct: 539 PDSAVWGALLGACRIHGNVELAAI 562
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 91/399 (22%), Positives = 154/399 (38%), Gaps = 59/399 (14%)
Query: 16 IHAQLISTCLISSIFLQL--IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKM-AL 72
+H + ++ + +L+ + + YRVF ++ R + +N M++G LC + A+
Sbjct: 98 LHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSG----LCRNARAVDAV 153
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCG----AVDYAESAFLRMLNPSLFCWK-----F 123
L G + D S + M V G A+ A R L+ LF +
Sbjct: 154 ALFGRMVGEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVY 213
Query: 124 GIIRLLI----MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
G + +L+ +F M RDLV+WN++IS + G + F + G +
Sbjct: 214 GKLGMLVEARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLV 273
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ SA A D +H V DV I G A+V
Sbjct: 274 SLASAVAQCGDERGAKSVHCYV--RRRGWDV-------------------GDIIAGNAVV 312
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
MYA+ A + F+ + R+++SW LI+ + Q G+ + +
Sbjct: 313 DMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQ 372
Query: 287 -FFVSLLSGCSHSGPVTKG--KHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDE 342
FVS+L S+ G + +G H + Y C++DL G L EA L +
Sbjct: 373 GTFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEH 432
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
MP + T W A++ H + A + + Q +K
Sbjct: 433 MPRRSTGP-WNAIIAGLGVHGHGAKALNLFSQMQQEGIK 470
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 31/176 (17%)
Query: 111 LRMLNPSLFC--------WKFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
L +L+P++F +FG + +F +MPERD+ +WN M+S L R+ + +
Sbjct: 95 LGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVA 154
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F + G ++ ++ + D +H V S ++FV + LID+Y
Sbjct: 155 LFGRMVGEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYG 214
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
K G M E A F M+ R++++W +ISA+ Q G
Sbjct: 215 KLG----------------MLVE------ARWVFGGMALRDLVTWNSIISAYEQGG 248
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G ++ + +H L K D ++ ID++ KCG
Sbjct: 385 LGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCGK---------------------- 422
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
++ +++F+ MP R WN +I+ L HG G + L F ++ G ++ + + +A
Sbjct: 423 LVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLLAA 482
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 146/312 (46%), Gaps = 48/312 (15%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWN 144
I +V+CG +D A F + S+ W K G I L +F+KMPE++LV+WN
Sbjct: 107 ISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWN 166
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
MI+ + + + F + G +S ++A + + L+ G +H V
Sbjct: 167 AMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKS 226
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
D G+ LI MY KCG +E ++ F + RR+++
Sbjct: 227 PLCDDTTAGTSLISMYCKCGV--LEDGWKL--------------------FVQVPRRDVV 264
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
+W +IS ++Q G +K F FV++L C+H+G G YF +M
Sbjct: 265 TWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSM 324
Query: 312 AK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
AK ++ CMVDLLG +G L EA LI++MP KP ++G LLGAC H NT++
Sbjct: 325 AKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEM 384
Query: 368 AELVMRNLLQLD 379
AE + LL LD
Sbjct: 385 AEFASQKLLNLD 396
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 62/277 (22%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F K+PE D VS+NTM+S R+ S+M A AF + D
Sbjct: 29 LFVKIPEPDAVSYNTMLSCYVRN--------------------SNMERAQAFFEDMPIKD 68
Query: 191 L-EWGPHLHSRVVHME-----------PSLDVFVGSGLIDMYLKCGCNGIESSIQIGK-- 236
W + + + P+ +V + +I Y++CG ++S++++ +
Sbjct: 69 TPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECG--DLDSALKLFEKA 126
Query: 237 ---------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
A++T Y + G A+ FE M +N+++W +I+ + + E F
Sbjct: 127 PFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFR 186
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSG 331
S L GCS + G+ + K T ++ + G
Sbjct: 187 TMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCG 246
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+L + KL ++P + V W A++ H K A
Sbjct: 247 VLEDGWKLFVQVPRR-DVVTWNAMISGYAQHGEGKKA 282
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV-------- 289
+++ Y + ++A FE M ++ SW +I+ F+Q ++K R F +
Sbjct: 44 MLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTW 103
Query: 290 -SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
+++SG G + F A F + M+ G +G A++L ++MP K
Sbjct: 104 NAMISGYVECGDLDSALKLFEK-APFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEK-N 161
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
V W A++ ++ + + R ++ ++
Sbjct: 162 LVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQ 194
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 159/360 (44%), Gaps = 54/360 (15%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
T+ ++ G R G + +H H V KF F++D + S I + + G A
Sbjct: 129 LTFPFLVKGCSRLQYGGTVGEVIHAH--VLKFGFLNDVFVGNSLISLFMNFGLSKNARKV 186
Query: 110 FLRMLNPSLFCWK---FGIIR------LLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M + W G +R L +F+KM R++++WN++I+ L + G E+L
Sbjct: 187 FDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESL 246
Query: 161 CTFIELW----NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
F E+ + + A+ SA A + ++ G +H+
Sbjct: 247 EIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHA----------------- 289
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
YL+ N IE + IG ALV MY + G Q+A F M ++ +W +IS F+
Sbjct: 290 ---YLRK--NDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALH 344
Query: 277 GVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
G +K F FV LLS CSHSG V +G+ F M + +
Sbjct: 345 GFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYH 404
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ CMVD+L + L EA LI MP KP +WGALLG C H N KL E V L+ L+
Sbjct: 405 YACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHYLIDLE 464
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/440 (27%), Positives = 188/440 (42%), Gaps = 104/440 (23%)
Query: 18 AQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVR---------------- 61
A+++ C S + + +D +++F + R F++NT+I G
Sbjct: 52 AEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEM 111
Query: 62 -------------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
C G I+ +HGL K+ F DE + + + M+V CG
Sbjct: 112 MSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGL 171
Query: 103 VDYA---------ESAFLRMLNP-----SLFCWKF---GIIRL------LIMFQKMPERD 139
+ A E + M++ + W G +RL ++F KM +R
Sbjct: 172 MKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRS 231
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWN-HGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+VSWNTMIS +++GF + + F E+ + + + A + + LE G LH
Sbjct: 232 VVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLH 291
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+D +GS LIDMY KC G +KA + FE +
Sbjct: 292 LYAEDSGIRIDDVLGSALIDMYSKC----------------------GIIEKAIMVFERL 329
Query: 259 SRRNMISWMVLISAFS----------------QAGVLEKPRFFFFFVSLLSGCSHSGPVT 302
R N+I+W +I+ F+ QAGV +++LL+ CSH+G V
Sbjct: 330 PRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD---VAYINLLTACSHAGLVE 386
Query: 303 KGKHYFTAMAKFT----YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+G+ YF+ M ++ CMVDLLG GLL EA++ I MP KP VIW ALLGA
Sbjct: 387 EGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGA 446
Query: 359 CCSHYNTKLAELVMRNLLQL 378
C H N ++ + V L+ +
Sbjct: 447 CRMHRNVEMGKRVANILMDM 466
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/428 (28%), Positives = 187/428 (43%), Gaps = 76/428 (17%)
Query: 1 MKACGS---------LKSLPIARKIHAQLISTCLISSIFLQLID--DDYRVFCDIG--PR 47
+KACG + + + R + A L + + S + +++D +VF + G R
Sbjct: 120 LKACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSR 179
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA--VDY 105
L ++N+M+ G V C G + +A L + + D + ID + K G VD
Sbjct: 180 DLVSWNSMVAGYVGC---GEMGLAQELFDEMPQ----RDAFSWGALIDGYGKQGGAGVDR 232
Query: 106 AESAFLRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFG 156
A F +M L CW I +F++MPER+++SW+ +I R G
Sbjct: 233 ARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEA 292
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L F + G + A SA A + LE G LHS + + DV V + L
Sbjct: 293 KEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTAL 352
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA---FELMSRRNMISWMVLISAF 273
IDMY+KCG + DLA FE M R++++W V+I
Sbjct: 353 IDMYMKCG-------------------------RMDLAMLIFESMPERSVVTWNVMIVGL 387
Query: 274 SQAGV----------LEKPRFFFFFVSL---LSGCSHSGPVTKGKHYFTAMAK----FTY 316
G +E R +SL L+ C+H+G V++G F M K
Sbjct: 388 GTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPK 447
Query: 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ +VDLLG +G L +A+ I+ MP +PT +WG+LL AC SH +LAEL + L
Sbjct: 448 VEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLA 507
Query: 377 QLDVKVFG 384
L G
Sbjct: 508 NLGADDSG 515
>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
Length = 687
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 39/267 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++ Q+M E+ + +WN +I+ T HG E L T+ L + + + + +A S
Sbjct: 270 VILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSST 329
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G +HS V +CG ++S + + AL MY++ GS +
Sbjct: 330 SLAEGKMIHSNAV-------------------ECG---LDSDVIVKNALTNMYSKCGSME 367
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
A F+ M R+ +SW ++ A++Q G E+ FVS+LS CS
Sbjct: 368 NARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCS 427
Query: 297 HSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H+G + +G YF ++ T ++ C+VDLLG +G L EA+K I +MPS+P V W
Sbjct: 428 HAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTW 487
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
+LLGAC H + +L R LL+LD
Sbjct: 488 ASLLGACRVHKDLDRGKLAARKLLELD 514
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 109/268 (40%), Gaps = 42/268 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP R + +WN+MIS + E F + + G + + + A + +
Sbjct: 67 VFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPEN 126
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G H+ + LD+FVG+ LI MY +C S +
Sbjct: 127 LQHGKHVRESISETSFELDLFVGTALITMYARC----------------------RSPEN 164
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFFFF------------FVSLLSG-CS 296
A F M ++N+I+W +I+AF+ G E R+F F+SLL+G +
Sbjct: 165 AAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTT 224
Query: 297 HSG--PVTKGKHYFTAMAKFTYTCYFVCMVDLLGL--SGLLGEAKKLIDEMPSKPTCVIW 352
SG +++ T T +V++ G +G L A+ ++ EM + W
Sbjct: 225 PSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITA-W 283
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDV 380
L+ H ++ A L LQL+
Sbjct: 284 NVLINGYTLHGRSREA-LETYQRLQLEA 310
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/365 (18%), Positives = 139/365 (38%), Gaps = 75/365 (20%)
Query: 50 FTYNTMINGGVRC----------LCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
F + M + G RC CV N++ H+ + + F D + + I M+
Sbjct: 97 FIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMY 156
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
+C + + A F RM +++L++W+ +I+ HG
Sbjct: 157 ARCRSPENAAQVFGRM----------------------KQKNLITWSAIITAFADHGHCG 194
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E L F + G + + + + + + LE +H +
Sbjct: 195 EALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITE-------------- 240
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYA--EGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
+G++ + + ALV +Y E G A++ + M + + +W VLI+ ++
Sbjct: 241 --------HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTL 292
Query: 276 AG----VLEK---------PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV- 321
G LE P F+S+L+ C+ S + +GK + + +
Sbjct: 293 HGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIV 352
Query: 322 --CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ ++ G + A+++ D MP + + V W +L A H ++ ++R + Q
Sbjct: 353 KNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGESEEVLKLIRKMEQEG 411
Query: 380 VKVFG 384
VK+ G
Sbjct: 412 VKLNG 416
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 45/191 (23%)
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +HS V E SLDVFV + L++ Y KC GS
Sbjct: 26 LRKGKFIHSCVRESEHSLDVFVNTALVNTYTKC----------------------GSLTD 63
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEK--PRFFFF--------------FVSLLSG 294
A F+ M R++ +W +ISA+S + E+ FF F F+S+L
Sbjct: 64 ARKVFDGMPCRSVGTWNSMISAYS---ISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C + + GKH ++++ ++ ++ + A ++ M K +
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQK-NLIT 179
Query: 352 WGALLGACCSH 362
W A++ A H
Sbjct: 180 WSAIITAFADH 190
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 1037
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 156/335 (46%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ +H F +D SI + I ++ +CG + A
Sbjct: 574 CAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEA--------------- 618
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ F+K+ +++ +SWN+++S L + G+ E L F+ + ++ Y +A
Sbjct: 619 -------YLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSA 671
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA AS+ +++ G +HS M LK G +S ++ +L+++
Sbjct: 672 ISAAASLANIKQGQQIHS-------------------MVLK---TGYDSEREVSNSLISL 709
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
YA+ GS A F MS RN+ISW +I+ +SQ G +E R F F
Sbjct: 710 YAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTF 769
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
V +LS CSH G V +G YF +M K + ++VC+VDLLG +G L A + I EMP
Sbjct: 770 VGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMP 829
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+IW LL AC H N ++ E +LL+L+
Sbjct: 830 IPADAMIWRTLLSACVIHKNIEIGERAAHHLLELE 864
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 134/331 (40%), Gaps = 68/331 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C +G + + +H V K F + + IDM+ K G + A
Sbjct: 464 FTYPSILR---TCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALA--- 517
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
LR+L +++PE D+VSW MI+ +H E L F E+
Sbjct: 518 -LRIL------------------RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ +A+A SA A + L G +H++ G
Sbjct: 559 GIQFDNIGFASAISACAGIRALRQGQQIHAQSY----------------------AAGFG 596
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV 289
+ + I AL+++YA G Q+A LAFE + +N ISW L+S +Q+G E+ FV
Sbjct: 597 ADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA--LQVFV 654
Query: 290 SLLSGCSHSG---------------PVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSG 331
+L + + +G+ + + K Y ++ L SG
Sbjct: 655 RMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSG 714
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ +A + ++M S+ + W A++ H
Sbjct: 715 SISDAWREFNDM-SERNVISWNAMITGYSQH 744
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 39/248 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M RD VS+N++IS L + GF L F ++ + A+ SA ASV
Sbjct: 318 IFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G LHS + S D+ + L+D+Y KC +
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKC----------------------ADVET 415
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSH 297
A F N++ W V++ A+ Q L F F + S+L C+
Sbjct: 416 AHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTS 475
Query: 298 SGPVTKGKHYFTAMAKFTYTC-YFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G + G+ T + K + +VC ++D+ G L A +++ +P + V W A
Sbjct: 476 LGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTA 534
Query: 355 LLGACCSH 362
++ H
Sbjct: 535 MIAGYVQH 542
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 110/287 (38%), Gaps = 64/287 (22%)
Query: 37 DYRVFCDIGPRYL---FTYNTMINGGVRCLCVG-NIKMALHLHGLVKKFYFVSDES--IA 90
+++VFC + R L T N GV CVG +I + FY+ D S +A
Sbjct: 140 NFQVFC-LFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA 198
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150
ID++ K G ++ A+ F + C K D+V+W MIS L
Sbjct: 199 NLLIDLYSKNGYIESAKKVF------NCICMK----------------DIVTWVAMISGL 236
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
+++G E + F ++ + + ++ SA + E G LH V+ +
Sbjct: 237 SQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSET 296
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
+V CNG LV +Y+ A+ F M+ R+ +S+ LI
Sbjct: 297 YV------------CNG----------LVALYSRSRKLISAERIFSTMNSRDGVSYNSLI 334
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
S Q G ++ F SLLS C+ G + KG
Sbjct: 335 SGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 45/226 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
CL G++ + LH + K F + + S +D + + G
Sbjct: 68 CLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD------------------- 108
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ G +++ F + R + SWN MI + F+ C F + G + +A
Sbjct: 109 QHGAVKV---FDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGV 165
Query: 182 FSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A + +HSR + G +SS + L+
Sbjct: 166 LKACVGGDIAFNYVKQVHSRTFYY----------------------GFDSSPLVANLLID 203
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+Y++ G + A F + +++++W+ +IS SQ G+ E+ F
Sbjct: 204 LYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLF 249
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 22/163 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C VG + + LH K +D + S +D++ KC V+ A FL
Sbjct: 372 CASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFL---------- 421
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++V WN M+ + ++ F ++ G + Y +
Sbjct: 422 ------------TTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSI 469
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
S+ L G +H+ V+ L+V+V S LIDMY K G
Sbjct: 470 LRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYG 512
>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1221
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 153/330 (46%), Gaps = 61/330 (18%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G+I + LH K ++D ++ + + M+ + G V+ E+ ++ NP
Sbjct: 252 GSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP--------- 302
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
DLVSW T IS ++GFG + + ++ + GF + +++ S+
Sbjct: 303 -------------DLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSC 349
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A V L+ G H + LK GC +S I G AL+ MY++
Sbjct: 350 ADVASLDQGMQFHC-------------------LALKLGC---DSEICTGNALINMYSKC 387
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
G A LAF++M ++ SW LI +Q G K F F+ +L
Sbjct: 388 GQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVL 447
Query: 293 SGCSHSGPVTKGKHYFTAM-AKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
GC+HSG V +G+ +F M ++++T ++ CM+D+LG +G EA ++I++MP +P
Sbjct: 448 MGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPD 507
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+IW LL +C H N + +L L++L
Sbjct: 508 ALIWKTLLASCKLHRNLDIGKLAADRLMEL 537
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP +++V+W +++S TR+G L F ++ G + A A A + L G
Sbjct: 1 MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+HS V + D ++GS LI+MY +C GS A
Sbjct: 61 EQVHSLAVRAGFAGDAWIGSCLIEMYSRC----------------------GSLPAAKEV 98
Query: 255 FELMSRRNMISWMVLISAFSQAGVLE 280
F+ M +++ + LISAF + G E
Sbjct: 99 FDRMDSPDVVGYTSLISAFCRNGEFE 124
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/387 (20%), Positives = 146/387 (37%), Gaps = 89/387 (22%)
Query: 60 VRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP--- 116
V C +G ++ +H L + F D I I+M+ +CG++ A+ F RM +P
Sbjct: 49 VACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVV 108
Query: 117 ------SLFCWKFGIIRLL--IMFQKMPERDLVSWNTMISILTR---------HGFGFET 159
S FC + G L + Q + + + +TM +ILT HG+ +
Sbjct: 109 GYTSLISAFC-RNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKK 167
Query: 160 LCTFIELWNHGFGLSSMLYATA----------FSARASVYD-------LEWGP--HLHSR 200
+ G S+ +TA F +V+D + W L+ R
Sbjct: 168 I---------GLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIR 218
Query: 201 VVHMEPSLDVF------------------VGS-GLIDMYLKCGCNGIE----SSIQIGKA 237
+E +L VF +G+ G I + + C+ I+ + I++ A
Sbjct: 219 DGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNA 278
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF------------ 285
L++MY G ++ + + +++SW ISA Q G EK
Sbjct: 279 LLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPN 338
Query: 286 -FFFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLID 341
+ F S+LS C+ + +G + K + C ++++ G +G A+ D
Sbjct: 339 GYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFD 398
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLA 368
M + W +L+ H + A
Sbjct: 399 VMHTH-DVTSWNSLIHGHAQHGDANKA 424
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 156/335 (46%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ +H F +D SI + I ++ +CG + A
Sbjct: 574 CAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEA--------------- 618
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ F+K+ +++ +SWN+++S L + G+ E L F+ + ++ Y +A
Sbjct: 619 -------YLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSA 671
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA AS+ +++ G +HS M LK G +S ++ +L+++
Sbjct: 672 ISAAASLANIKQGQQIHS-------------------MVLK---TGYDSEREVSNSLISL 709
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
YA+ GS A F MS RN+ISW +I+ +SQ G +E R F F
Sbjct: 710 YAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTF 769
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
V +LS CSH G V +G YF +M K + ++VC+VDLLG +G L A + I EMP
Sbjct: 770 VGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMP 829
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+IW LL AC H N ++ E +LL+L+
Sbjct: 830 IPADAMIWRTLLSACVIHKNIEIGERAAHHLLELE 864
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 134/331 (40%), Gaps = 68/331 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C +G + + +H V K F + + IDM+ K G + A
Sbjct: 464 FTYPSILR---TCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALA--- 517
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
LR+L +++PE D+VSW MI+ +H E L F E+
Sbjct: 518 -LRIL------------------RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ +A+A SA A + L G +H++ G
Sbjct: 559 GIQFDNIGFASAISACAGIRALRQGQQIHAQSY----------------------AAGFG 596
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV 289
+ + I AL+++YA G Q+A LAFE + +N ISW L+S +Q+G E+ FV
Sbjct: 597 ADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA--LQVFV 654
Query: 290 SLLSGCSHSG---------------PVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSG 331
+L + + +G+ + + K Y ++ L SG
Sbjct: 655 RMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSG 714
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ +A + ++M S+ + W A++ H
Sbjct: 715 SISDAWREFNDM-SERNVISWNAMITGYSQH 744
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 39/248 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M RD VS+N++IS L + GF L F ++ + A+ SA ASV
Sbjct: 318 IFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G LHS + S D+ + L+D+Y KC +
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKC----------------------ADVET 415
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSH 297
A F N++ W V++ A+ Q L F F + S+L C+
Sbjct: 416 AHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTS 475
Query: 298 SGPVTKGKHYFTAMAKFTYTC-YFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G + G+ T + K + +VC ++D+ G L A +++ +P + V W A
Sbjct: 476 LGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTA 534
Query: 355 LLGACCSH 362
++ H
Sbjct: 535 MIAGYVQH 542
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 110/287 (38%), Gaps = 64/287 (22%)
Query: 37 DYRVFCDIGPRYL---FTYNTMINGGVRCLCVG-NIKMALHLHGLVKKFYFVSDES--IA 90
+++VFC + R L T N GV CVG +I + FY+ D S +A
Sbjct: 140 NFQVFC-LFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA 198
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150
ID++ K G ++ A+ F + C K D+V+W MIS L
Sbjct: 199 NLLIDLYSKNGYIESAKKVF------NCICMK----------------DIVTWVAMISGL 236
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
+++G E + F ++ + + ++ SA + E G LH V+ +
Sbjct: 237 SQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSET 296
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
+V CNG LV +Y+ A+ F M+ R+ +S+ LI
Sbjct: 297 YV------------CNG----------LVALYSRSRKLISAERIFSTMNSRDGVSYNSLI 334
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
S Q G ++ F SLLS C+ G + KG
Sbjct: 335 SGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 45/226 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
CL G++ + LH + K F + + S +D + + G
Sbjct: 68 CLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD------------------- 108
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ G +++ F + R + SWN MI + F+ C F + G + +A
Sbjct: 109 QHGAVKV---FDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGV 165
Query: 182 FSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A + +HSR + G +SS + L+
Sbjct: 166 LKACVGGDIAFNYVKQVHSRTFYY----------------------GFDSSPLVANLLID 203
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+Y++ G + A F + +++++W+ +IS SQ G+ E+ F
Sbjct: 204 LYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLF 249
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 22/163 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C VG + + LH K +D + S +D++ KC V+ A FL
Sbjct: 372 CASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFL---------- 421
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++V WN M+ + ++ F ++ G + Y +
Sbjct: 422 ------------XTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSI 469
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
S+ L G +H+ V+ L+V+V S LIDMY K G
Sbjct: 470 LRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYG 512
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 163/346 (47%), Gaps = 51/346 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ + + + +HG + F+S+ ++ S +D +VKCG + A F M + W
Sbjct: 202 CVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAW 261
Query: 122 --------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
K+G ++ +F +MPE++ VSW +IS R+G G + L F ++
Sbjct: 262 TTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVR 321
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+++ A AS+ L+ G +H+ ++ + + V S LIDMY KCG S+
Sbjct: 322 PDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCG------SL 375
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRR-NMISWMVLISAFSQAGVLE----------- 280
IG+ + F+LM + +++ W +ISA +Q G E
Sbjct: 376 GIGRKV----------------FDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVR 419
Query: 281 ---KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMA----KFTYTCYFVCMVDLLGLSGLL 333
KP F V +L+ CSHSG V +G ++F +M+ ++ C++DLLG +G
Sbjct: 420 SGAKPDKITFVV-ILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCF 478
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
E +++MP KP +W ALLG C H + +L L++L+
Sbjct: 479 EEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELE 524
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 144/329 (43%), Gaps = 39/329 (11%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW------ 121
+ + L L GL + F+S+ I +M+ KCG A F +M +L+ W
Sbjct: 81 VHLHLKLTGLKRPGTFLSNHLI-----NMYAKCGKEVEARKVFDKMSARNLYSWNNMLSG 135
Query: 122 --KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
K G+I+ +F KMPE+D+VSWNTM+ + G+ E L + E G + +
Sbjct: 136 YAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSF 195
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------IESSI 232
A + + ++ +H +++ +V + S ++D Y+KCG G E S
Sbjct: 196 AGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSA 255
Query: 233 QIGKALVTM---YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF--- 285
+ A TM YA+ G + A+ F M +N +SW LIS +++ G+ K F
Sbjct: 256 RDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKM 315
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLL 333
F F S L C+ + GK + + + T ++D+ G L
Sbjct: 316 MLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSL 375
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G +K+ D M +K V+W ++ A H
Sbjct: 376 GIGRKVFDLMGNKLDVVLWNTIISALAQH 404
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 181/429 (42%), Gaps = 80/429 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+KA + P+ R +H+ ++ + F+ LID D +VF ++ R +
Sbjct: 443 IKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDV 501
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSI------DMHVKCGAV 103
++NT + VR L G+ K F DE K ++ D + K G V
Sbjct: 502 VSWNTAMAAMVR---------EGELAGVRKLF----DEMPEKDTVSWNTILDGYTKAGEV 548
Query: 104 DYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHG 154
+ A F RM ++ W K G + + ++F KMP ++LV+W M+S + G
Sbjct: 549 EAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKG 608
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
E F ++ L + +A A L G +H V V +
Sbjct: 609 LVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCN 668
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAF 273
LIDM+ KCGC +AD F+ + +++ +SW +I F
Sbjct: 669 ALIDMFCKCGC----------------------VNRADYVFDTETVQKDSVSWNSIIGGF 706
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTY 316
+ G +K F +++LS C+H G V +G+ +F+ M +
Sbjct: 707 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQ 766
Query: 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CM+DLLG GL+ EA LI MP +P VIWG+LL AC H N + AE+ + L
Sbjct: 767 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELS 826
Query: 377 QLDVKVFGS 385
+L G+
Sbjct: 827 KLQPSNAGN 835
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGV------------LEKPRFFFFFVSLL 292
GG+ + A AF M RR+ ++ LI A S AGV L F +L+
Sbjct: 418 GGAPRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALI 477
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
S +G + + F M + + M ++ G L +KL DEMP K T V W
Sbjct: 478 DAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMV-REGELAGVRKLFDEMPEKDT-VSW 535
Query: 353 GALL 356
+L
Sbjct: 536 NTIL 539
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 143/343 (41%), Gaps = 63/343 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++++ + G V + + I + I M+ KCG
Sbjct: 229 CGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGE------------------- 269
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++ +F MP RD ++WN IS ++G E + F + +G + +
Sbjct: 270 ---LVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAV 326
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA AS+ L+ G + H D+FV + LIDMY KC
Sbjct: 327 LSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKC------------------ 368
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------- 286
GS + A F M R+N SW +ISA + G ++ F
Sbjct: 369 ----GSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDI 424
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDE 342
FVSLLS C H+G V +G F M+ ++ CMVDLL +G L EA +I++
Sbjct: 425 TFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEK 484
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
MP KP V GAL AC N + E V++ LL+LD G+
Sbjct: 485 MPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGN 527
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 131/324 (40%), Gaps = 62/324 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + I+MA H V K +D S + M+ +CG
Sbjct: 127 CANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCG-------------------- 166
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYAT 180
+ G+ R + F ++ E+DLVSWN+++S + GF E + F L GF M +
Sbjct: 167 ENGVARKV--FDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVS 224
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A + DLE G + VV ++ ++GS LI MY KCG + SS +I
Sbjct: 225 VLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCG--ELVSSRRI------ 276
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
F+ M R+ I+W ISA++Q G+ ++ F
Sbjct: 277 --------------FDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVT 322
Query: 288 FVSLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
++LS C+ G + GK Y T ++D+ G L A+++ ++MP
Sbjct: 323 LTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMP 382
Query: 345 SKPTCVIWGALLGACCSHYNTKLA 368
K W A++ A SH K A
Sbjct: 383 RKNDAS-WNAMISALASHGKAKEA 405
>gi|147820355|emb|CAN67654.1| hypothetical protein VITISV_038410 [Vitis vinifera]
Length = 492
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 164/373 (43%), Gaps = 57/373 (15%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D +F ++ ++N MI G V +G+ + L K S S +
Sbjct: 64 VDYARTIFEEMSHPDTVSWNVMIRGYVENHRIGDAR------ELFDKMPVRSSVSW-NTM 116
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL---------LIMFQKMPERDLVSWN 144
I + K G A F+ M + + W I L +F+ MPE VSW
Sbjct: 117 IMAYAKEGKTHIAMKLFIVMPDKDVVSWTAIITALSRGSHIEDAWRLFKLMPEPSSVSWA 176
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
++IS ++G ETLC F E+ + G +S + +A +A A + L L+S+++
Sbjct: 177 SIISGFQQNGLAAETLCRFKEMLSVGVQPTSHSFTSALTASADLAMLSLSQQLYSQLLK- 235
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
G ES+ IG + ++M+ + GS + A E + + +++
Sbjct: 236 ---------------------RGFESNTXIGNSAISMFIKSGSFRNARRVLEDLPQPDIV 274
Query: 265 SWMVLISAFSQAGV----------LEKPRFF---FFFVSLLSGCSHSGPVTKGKHYFTAM 311
+W ++ + Q G ++K +F F+ LL GCSH G V KGK YF +M
Sbjct: 275 TWNAMVVGYGQNGYGIEAIMSFHQMQKAKFLPDRVSFLGLLHGCSHCGYVEKGKQYFRSM 334
Query: 312 AKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
Y ++ CMVDLL +G L EA KLI EMP +PTC+ W LL C + +
Sbjct: 335 ES-NYGISPGPEHYACMVDLLSRAGFLKEAHKLIKEMPFEPTCIFWRTLLNGCRIWGDLE 393
Query: 367 LAELVMRNLLQLD 379
L +L+LD
Sbjct: 394 LGFYAANRILELD 406
>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 798
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 153/342 (44%), Gaps = 47/342 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +H K ++ ++ S IDM+ KC A++ F + ++ CW
Sbjct: 391 CATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCW 450
Query: 122 KF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
++ + +F+KMP R+L SWNT+IS ++ + L +F + G
Sbjct: 451 NSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQV 510
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ +++ A A++ L G H++ + + G+E SI
Sbjct: 511 PGEITFSSVLLACANLCSLVTGKMAHAKTIKL----------------------GMEESI 548
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
IG AL MYA+ G Q + F M RN ++W +I ++ G E+
Sbjct: 549 FIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLLEDMMAT 608
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEA 336
F++LL CSH G V + HYF M + + ++ CMVD+L +G L EA
Sbjct: 609 GMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEA 668
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ L+ + PSK W ALL AC ++ N ++ E + L +L
Sbjct: 669 EALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHEL 710
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 46/355 (12%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHG-LVKKFYFVSDESIAKSSIDMHV 98
V C + P + T+ MI C+ G +A+ + G +K +F S + S I +++
Sbjct: 240 VSCGVRPNGI-TFVCMIKA---CVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYL 295
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKF------------GIIRLLIMFQKMPERDLVSWNTM 146
+ G A F M + W G R+L MPER+ VSW T+
Sbjct: 296 RMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVL---DAMPERNEVSWGTL 352
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
I+ + G E + + ++ G + +++ SA A++ DL G +H+R + M
Sbjct: 353 IARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGS 412
Query: 207 SLDVFVGSGLIDMYLKC-GCNGI--------ESSIQIGKALVTMYAEGGSTQKADLAFEL 257
S +VFV S LIDMY KC C E +I +L + Y+ G +A F+
Sbjct: 413 STNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKK 472
Query: 258 MSRRNMISWMVLISAFSQ-AGVLEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
M RN+ SW +IS ++Q ++ R F F S+L C++ + G
Sbjct: 473 MPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTG 532
Query: 305 K--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
K H T + + + D+ SG L +K++ +MP + V W A++
Sbjct: 533 KMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERND-VTWTAMI 586
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASV 188
+F MPER++VS+ TM+ L + G E +EL+ S + S R +
Sbjct: 173 LFDGMPERNVVSYTTMVDALMKRGRVAEA----VELYEQCPSGSVAFFTATISGFVRNEL 228
Query: 189 YDLEWGPHLHSRVVHMEPSLDVF-------VGSGLIDMYLK-----CGCNGIESSIQIGK 236
+ G + P+ F VG+G + + N ESSI++
Sbjct: 229 HHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQN 288
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
+L+T+Y G A F+ M ++++SW L+ +S++G L+ R
Sbjct: 289 SLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 335
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 150/338 (44%), Gaps = 49/338 (14%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI-- 125
+ +++HG V K D I S ID++ KCG D F +L ++ CW +
Sbjct: 332 LSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGG 391
Query: 126 -------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
+F+ +PE++ SW T+J+ + + L F L G + +
Sbjct: 392 YSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTF 451
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
++ A AS+ L+ G ++H +++ + D+FVG+ L DMY K C I SS Q+
Sbjct: 452 SSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAK--CGDIGSSKQV---- 505
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
FE M +N ISW V+I +++G + F
Sbjct: 506 ----------------FERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLI 340
+S+L CSH G V KG YF +M K ++ C+VDLL SG L EA++ I
Sbjct: 550 ELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFI 609
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+P +P W ALL C + + K+AE + L QL
Sbjct: 610 RTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQL 647
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 145/319 (45%), Gaps = 34/319 (10%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ + + + GLV K F S++ S I + ++ G +D A F RM + W
Sbjct: 194 CGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSW 253
Query: 122 --------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+ G +R +F +MPER+ +SW+ MI+ ++ G+ E L F ++ GF
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK 313
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG----- 227
+ +A SA AS+ L G ++H V + DVF+GS LID+Y KCG
Sbjct: 314 PNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLV 373
Query: 228 ----IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
+E ++ ++V Y+ G ++ + FEL+ +N SW +J+ + + EK
Sbjct: 374 FDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVL 433
Query: 284 FFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF--TYTCYF-VCMVDLL 327
F F S+L C+ + KG + + K Y + + D+
Sbjct: 434 EVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMY 493
Query: 328 GLSGLLGEAKKLIDEMPSK 346
G +G +K++ + MP K
Sbjct: 494 AKCGDIGSSKQVFERMPEK 512
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 19/238 (7%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW----- 121
N + + +VK+F SD ++ I +V+ G + A F M + W
Sbjct: 68 NCRKFAEIDQIVKEFDG-SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALIS 126
Query: 122 ---KFGIIRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
K+G + + F++ P +++VSW IS R+G FE L F L G + +
Sbjct: 127 GLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVT 186
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI--QIG 235
+ + A + D G + VV + V + LI + L+ G + + ++
Sbjct: 187 FTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME 246
Query: 236 K-------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
K A++ Y E G ++A F+ M RN ISW +I+ +SQ+G E+ F
Sbjct: 247 KRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLF 304
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ +++HG + K D + + DM+ KCG + ++
Sbjct: 458 CASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQ------------- 504
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
+F++MPE++ +SW MI L GF E+L F E+
Sbjct: 505 ---------VFERMPEKNEISWTVMIQGLAESGFAVESLILFEEM 540
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----------GCNGIESSIQIGKALVTMY 242
G LH+ ++ S ++ L+ +YL C +G S + + +++ Y
Sbjct: 40 GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDG--SDLVVSNCMISAY 97
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+ G+ +A L F+ M RN +SW LIS + G +E+ ++F
Sbjct: 98 VQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYF 141
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFFF--------- 286
AL++ + G +++ FE +N++SW IS F + G+ E + FF
Sbjct: 123 ALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRP 182
Query: 287 ---FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE---AKKLI 340
F S++ C G G + K + Y L+ LS +GE A+++
Sbjct: 183 NDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVF 242
Query: 341 DEMPSKPTCVIWGALLGA 358
D M K V W A+L A
Sbjct: 243 DRM-EKRDVVSWTAILDA 259
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 131/266 (49%), Gaps = 39/266 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+KM ERD +W+ MI ++ F E L TF E+ G + + + A++
Sbjct: 289 VFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAV 348
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L++G +H+ ++ +DVF S LI MY+KCG + K
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG----------------------NLDK 386
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F ++++ W +I+ ++Q G+ E+ F ++ L+ CS+
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446
Query: 298 SGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G V +G+ F +M + ++ CMVDLLG SGL+ EA LI MP +P VIWG
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLD 379
AL+GAC H N ++AE + LL+L+
Sbjct: 507 ALMGACRMHRNAEIAEFAAKKLLELE 532
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 38/238 (15%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F++MP RDL S+N +IS G L A +A AS+
Sbjct: 68 LGLFRRMPSRDLASYNALIS---------------------GLSLRRQTLPDAAAALASI 106
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
VV L +V GL+ ++ E + L+ + G
Sbjct: 107 -------PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRV 159
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSG 299
+A F+ M R++++W ++S + QAG + + R F + +++SG + +G
Sbjct: 160 NEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNG 219
Query: 300 PVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
V + F M + + +V + +G + +A +L + MP P ++G
Sbjct: 220 EVNLARKLFEVMPERNEVSWTAMLVGYIQ-AGHVEDAAELFNAMPEHPVAACNAMMVG 276
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 255 FELMSRRNMISWMVLISAFS--------QAGVLEK---PRFFFFFVSLLSGCSHSGPVTK 303
F M R++ S+ LIS S A L P F SLL G G +
Sbjct: 71 FRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLAD 130
Query: 304 GKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
F M + + Y V + LL +G + EA++L DEMP + V W A+L C
Sbjct: 131 AIRLFQQMPERNHVSYTVLLGGLLD-AGRVNEARRLFDEMPDR-DVVAWTAMLSGYCQ 186
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 34/257 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP+RD+V+W M+S + G E F E+ +++A S Y
Sbjct: 165 LFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV--------VSWTAMISGYA 216
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGI-ESSIQIGKALVTM 241
+L ++ + P + + ++ Y++ G N + E + A++
Sbjct: 217 QNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG 276
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
+ + G A FE M R+ +W +I A+ Q L + F
Sbjct: 277 FGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSV 336
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPS 345
+S+L+ C+ + G+ AM + ++ + L+ + G L +AK++
Sbjct: 337 ISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396
Query: 346 KPTCVIWGALLGACCSH 362
K V+W +++ H
Sbjct: 397 K-DIVMWNSMITGYAQH 412
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 162/360 (45%), Gaps = 55/360 (15%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
++ F + G+ C +G +HG V KF S+ + S ++M+VKC ++D A
Sbjct: 117 KFTFPFVVKSCAGLMCYDLGK-----QVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDA 171
Query: 107 ESAFLRMLNPSLFCWKF---GIIRLLIM------FQKMPERDLVSWNTMISILTRHGFGF 157
F M W G +RL M F++M ++ + SW ++S R G
Sbjct: 172 HRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYA 231
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
+ L F + G + + A + LE G +H ++ V + LI
Sbjct: 232 DALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALI 291
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+MY KCG SI G+ L F+ M R++ISW +I + G
Sbjct: 292 EMYAKCG------SIDQGRRL----------------FDQMKERDVISWSTMIVGLANHG 329
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----Y 319
+ F FV LL+ C+H+G + +G YF +M K Y +
Sbjct: 330 RAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESM-KRDYNIEPGVEH 388
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ C+V+LLGLSG L +A +L+ +MP KP IWG+LL +C SH N K+A + M +LL+L+
Sbjct: 389 YGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELE 448
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 155/341 (45%), Gaps = 48/341 (14%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK-- 122
+G+ ++ +HGL+ + S+ + + +DM+ +CG + A + F RML W
Sbjct: 132 LGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSM 191
Query: 123 -------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
G+ L F +MP + VSW +I+ + + L F ++ G +
Sbjct: 192 LYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNH 251
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+ SA A + L+ G +H + ++ V + L+DMY
Sbjct: 252 ITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMY--------------- 296
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------- 287
A+ GS A FE + ++ +W +IS+F+ G K F+
Sbjct: 297 -------AKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGIL 349
Query: 288 -----FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKK 338
FVS+LS CSH+G + +G+ F M + + ++ CMVDLLG GLL EA+
Sbjct: 350 PNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEA 409
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LID M +P VIW +LL AC +H N +LAE+ + +++ +
Sbjct: 410 LIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGKEIIKRE 450
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 87/215 (40%), Gaps = 50/215 (23%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + +HG K ++ + + +DM+ K G++ A S
Sbjct: 261 CADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFS------------- 307
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+++ +D +W TMIS T G G + + F ++ G +S+ + +
Sbjct: 308 ---------VFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSV 358
Query: 182 FSARASVYDLEWGPHLHSR---VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
SA + ++ G L + V H++P L+ + GC +
Sbjct: 359 LSACSHAGLIQEGRELFDKMREVYHIDPRLEHY------------GC------------M 394
Query: 239 VTMYAEGGSTQKADLAFELMS-RRNMISWMVLISA 272
V + GG ++A+ + M +++ W L+SA
Sbjct: 395 VDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSA 429
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 159/347 (45%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+++ + C + +++ + K F S +A S I M+ + G +D A A
Sbjct: 377 FTFSSTLKA---CANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKA 433
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F I+F E++L+S+NT+I ++ E L F E+ +
Sbjct: 434 FD------------------ILF----EKNLISYNTVIDAYAKNLNSEEALELFNEIEDQ 471
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G G S+ +A+ S AS+ + G +H+RV+ L+ V + LI MY +CG IE
Sbjct: 472 GMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCG--NIE 529
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
S+ Q+ FE M RN+ISW +I+ F++ G + F
Sbjct: 530 SAFQV--------------------FEDMEDRNVISWTSIITGFAKHGFATQALELFHKM 569
Query: 288 -----------FVSLLSGCSHSGPVTKG-KHY---FTAMAKFTYTCYFVCMVDLLGLSGL 332
++++LS CSH G V +G KH+ +T ++ CMVD+LG SG
Sbjct: 570 LEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGS 629
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EA + I+ MP K ++W LGAC H N +L + + +++ +
Sbjct: 630 LSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQE 676
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 37/255 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+KMPER+ V+W MI+ L + G+ E + F+E+ G+ + SA A++
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G LHS+ + +LD VG LI+MY KC + GS
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVD-------------------GSMCA 327
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCS 296
A F+ + N+ SW +I+ + Q G ++ F F S L C+
Sbjct: 328 ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387
Query: 297 HSGPVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ + G+ FT K ++ C ++ + SG + +A+K D + K + +
Sbjct: 388 NLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEK-NLISYN 446
Query: 354 ALLGACCSHYNTKLA 368
++ A + N++ A
Sbjct: 447 TVIDAYAKNLNSEEA 461
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 131 MFQKM-PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
+FQ M RDL+SW+ M+S + GF L TF+++ +G+ + +A A A ++
Sbjct: 123 IFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAE 182
Query: 190 DLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+ G + VV DV VG GLIDM++K G + S+ ++
Sbjct: 183 FVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFKV-------------- 227
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG 277
FE M RN ++W ++I+ Q G
Sbjct: 228 ------FEKMPERNAVTWTLMITRLMQFG 250
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 65/227 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLIS------TCLISSIFLQL-----IDDDYRVFCDIGPRYL 49
+KAC +L +L I ++ + C+ +S+ IDD + F + + L
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNL 442
Query: 50 FTYNTMINGGVRCL--------------------------------CVGNIKMALHLHGL 77
+YNT+I+ + L +G I +H
Sbjct: 443 ISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHAR 502
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V K ++S+ + I M+ +CG + ESAF +F+ M +
Sbjct: 503 VIKSGLKLNQSVCNALISMYSRCGNI---ESAFQ-------------------VFEDMED 540
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
R+++SW ++I+ +HGF + L F ++ G + + Y SA
Sbjct: 541 RNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSA 587
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 161/353 (45%), Gaps = 51/353 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + N+K+ +H + + F + ++ + I M+ K G V+ A+ + + +L
Sbjct: 288 CANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVI 347
Query: 122 KF-----GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
F G ++L +F + RD+V+W MI ++GF + + F + G
Sbjct: 348 AFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEG 407
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
++ AT S +S+ L+ G +H+ +G S
Sbjct: 408 PKPNNYTLATMLSVSSSLASLDHGRQIHASATR----------------------SGNAS 445
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAGVLEKPRFFF--- 286
S+ + AL+TMYA+ GS A F L+ +R+ I+W +I A +Q G+ E+ F
Sbjct: 446 SVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERM 505
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
+V +LS C+H G V +G+ Y+ M ++ CM+DL G +GL
Sbjct: 506 LENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGL 565
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
L EA I+ MP +P + WG+LL +C H N +LAE+ LL ++ + G+
Sbjct: 566 LQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGA 618
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 127/276 (46%), Gaps = 43/276 (15%)
Query: 29 IFLQLIDDDYRVFCDIGPRYLFTYNTMIN--GGVRCLCVGNIKMALHLHGLVKKFYFVSD 86
+F +++ DD P FT ++ V CL +G +H V K S
Sbjct: 132 MFREMVSDDV-------PPTQFTLTNVLASCAAVECLGIGR-----KVHSFVVKHGLSSY 179
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPE 137
S+A S ++M+ K G A+ F RM S W + G++ L + F++M E
Sbjct: 180 ISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIE 239
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
RD+VSWN MIS +HGF E L F + L + A+A SA A++ +L+ G
Sbjct: 240 RDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQ 299
Query: 197 LHSRVVHMEPSLDVF--VGSGLIDMYLKCGCNGIESSIQIGK-------------ALVTM 241
+H+ ++ E D F VG+ LI MY K G G+E + +I + AL+
Sbjct: 300 IHAHIIRTE--FDTFGAVGNALISMYSKSG--GVEIAQKIIEQSMISNLDVIAFTALLDG 355
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
Y + G A F+ + R++++W +I + Q G
Sbjct: 356 YVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNG 391
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 119/302 (39%), Gaps = 52/302 (17%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWN 144
++ + K G + A F M S+F W + +F++MPE D VSW
Sbjct: 55 MNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWT 114
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
MI + G + F E+ + + ++ A+V L G +HS VV
Sbjct: 115 AMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVK- 173
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+G+ S I + +L+ MYA+ G A + F+ M ++
Sbjct: 174 ---------------------HGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTS 212
Query: 265 SWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTK-GKHYFTAMAKFTYTCYFVCM 323
SW +IS+ Q+G+++ + F + S + ++ +H F A
Sbjct: 213 SWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREA----------- 261
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383
+D+ K++ + SKP + L AC + N KL + + ++++ + F
Sbjct: 262 LDIFS---------KMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTF 312
Query: 384 GS 385
G+
Sbjct: 313 GA 314
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 26/212 (12%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIGKA-----LVTMYAE 244
G +H+R++ L VF+ + L++ Y K G + + + + +++ YA+
Sbjct: 32 GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSL 291
GG ++A FE M + +SW +I ++Q G E P F ++
Sbjct: 92 GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE---AKKLIDEMPSKPT 348
L+ C+ + G+ + + K + Y LL + G+ AK + D M K T
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
W ++ + LA++ +++ DV
Sbjct: 212 SS-WNTMISSHMQSGLVDLAQVQFEQMIERDV 242
>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
Length = 1135
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 153/330 (46%), Gaps = 61/330 (18%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G+I + LH K ++D ++ + + M+ + G V+ E+ ++ NP
Sbjct: 325 GSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP--------- 375
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
DLVSW T IS ++GFG + + ++ + GF + +++ S+
Sbjct: 376 -------------DLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSC 422
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A V L+ G H + LK GC +S I G AL+ MY++
Sbjct: 423 ADVASLDQGMQFHC-------------------LALKLGC---DSEICTGNALINMYSKC 460
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
G A LAF++M ++ SW LI +Q G K F F+ +L
Sbjct: 461 GQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVL 520
Query: 293 SGCSHSGPVTKGKHYFTAM-AKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
GC+HSG V +G+ +F M ++++T ++ CM+D+LG +G EA ++I++MP +P
Sbjct: 521 MGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPD 580
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+IW LL +C H N + +L L++L
Sbjct: 581 ALIWKTLLASCKLHRNLDIGKLAADRLMEL 610
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F +MP +++V+W +++S TR+G L F ++ G + A A A +
Sbjct: 68 LDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADL 127
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L G +HS V + D ++GS LI+MY +C GS
Sbjct: 128 GALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRC----------------------GSL 165
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
A F+ M +++ + LISAF + G E
Sbjct: 166 PAAKEVFDRMDSPDVVGYTSLISAFCRNGEFE 197
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/387 (20%), Positives = 146/387 (37%), Gaps = 89/387 (22%)
Query: 60 VRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP--- 116
V C +G ++ +H L + F D I I+M+ +CG++ A+ F RM +P
Sbjct: 122 VACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVV 181
Query: 117 ------SLFCWKFGIIRLL--IMFQKMPERDLVSWNTMISILTR---------HGFGFET 159
S FC + G L + Q + + + +TM +ILT HG+ +
Sbjct: 182 GYTSLISAFC-RNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKK 240
Query: 160 LCTFIELWNHGFGLSSMLYATA----------FSARASVYD-------LEWGP--HLHSR 200
+ G S+ +TA F +V+D + W L+ R
Sbjct: 241 I---------GLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIR 291
Query: 201 VVHMEPSLDVF------------------VGS-GLIDMYLKCGCNGIE----SSIQIGKA 237
+E +L VF +G+ G I + + C+ I+ + I++ A
Sbjct: 292 DGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNA 351
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF------------ 285
L++MY G ++ + + +++SW ISA Q G EK
Sbjct: 352 LLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPN 411
Query: 286 -FFFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLID 341
+ F S+LS C+ + +G + K + C ++++ G +G A+ D
Sbjct: 412 GYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFD 471
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLA 368
M + W +L+ H + A
Sbjct: 472 VMHTH-DVTSWNSLIHGHAQHGDANKA 497
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 147/320 (45%), Gaps = 49/320 (15%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---GIIR------LLIMFQKMPERD 139
+ + I M+ K G V A F M + + W G +R + MF KMPERD
Sbjct: 102 VGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERD 161
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
L+SW MI+ + GF E L F E+ G + A +A ++ L +G +H
Sbjct: 162 LISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWVHR 221
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
V++ + +V V + LID+Y +CGC + A F+ M
Sbjct: 222 YVMNQDFKNNVRVSNSLIDLYCRCGC----------------------VEFAREVFDKME 259
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
+R ++SW +I F+ G + +F F L+ CSH G V +G
Sbjct: 260 KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLR 319
Query: 307 YFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
YF M + ++ C+VDL +G L +A K+I+ MP KP V+ G+LL AC +H
Sbjct: 320 YFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVIGSLLAACRTH 379
Query: 363 -YNTKLAELVMRNLLQLDVK 381
NT LAE +M++L L+VK
Sbjct: 380 GNNTVLAERLMKHLSDLNVK 399
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 119/298 (39%), Gaps = 77/298 (25%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMING--------------------GVR------------ 61
+D+ ++F + R L ++ MING GVR
Sbjct: 147 VDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNA 206
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + L +H V F ++ ++ S ID++ +CG V++A
Sbjct: 207 CTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFARE------------- 253
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM +R +VSWN++I +G E+L F ++ GF ++ + A
Sbjct: 254 ---------VFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGA 304
Query: 182 FSARASVYDLEWGPH----------LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES- 230
+A + V +E G + R+ H +D++ +G ++ LK IES
Sbjct: 305 LTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKV----IESM 360
Query: 231 -----SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS---WMVLISAFSQAGVLE 280
+ IG L G +T A+ + +S N+ S +++L + ++ G E
Sbjct: 361 PMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWE 418
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 20/171 (11%)
Query: 116 PSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
P L +G ++ + Q E VSW + I++LTR+G E F ++ G +
Sbjct: 4 PILTRKNYGXPKIQRLNQSTSE-TTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNH 62
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+ + S D G S ++H C + + +G
Sbjct: 63 ITFIALLSG---CGDFPSGSETLSNLLHG----------------YACKLGLDRTHVMVG 103
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
A++ MY++ G +KA L F+ M N ++W +I + ++G ++ F
Sbjct: 104 TAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMF 154
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 151/339 (44%), Gaps = 61/339 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ +HG + K +D + + IDM+ KCG V A
Sbjct: 414 CGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANK------------- 459
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
MF+K+ E+ LV+WN+MI +++G+ E + F +++ + + + + +
Sbjct: 460 ---------MFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSV 510
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + + LE G +H +++ D ++ + L DMY KC
Sbjct: 511 IQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKC------------------ 552
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G Q A F+ MS R+++SW V+I+ + G + F F
Sbjct: 553 ----GELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITF 608
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+ +LS CSH+G V +GK YF +M++F +F CMVDLL +G L A ++I +P
Sbjct: 609 MHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPF 668
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWGALL C H + + + +NLL +D G
Sbjct: 669 PANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTG 707
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 92/402 (22%), Positives = 163/402 (40%), Gaps = 68/402 (16%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFLQ--------LIDDDY---RVFCDIGPRYLF 50
+AC L SL + R +H ++ + S+ L + D Y R+F ++ R
Sbjct: 209 EACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTA 268
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA- 109
+ MI+ + C + AL++ +++F ++ + + G V S
Sbjct: 269 PWTPMISCYNQSGC---FQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVH 325
Query: 110 ---FLRMLNPSLFCWKFGIIRLLI----------MFQKMPERDLVSWNTMISILTRHGFG 156
R ++P L ++ L +F+ + E+ ++SWNT+ISI TR+G
Sbjct: 326 GFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQP 385
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L F+++ G S A++ SA ++ + G +H ++ + + FV + L
Sbjct: 386 EEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKT-GNFNDFVQNAL 444
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
IDMY KCG A+ FE + +++++W +I FSQ
Sbjct: 445 IDMYAKCGF----------------------VHSANKMFEKIKEKSLVTWNSMICGFSQN 482
Query: 277 GV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF- 320
G +E F F+S++ CSH G + KGK H+ M Y
Sbjct: 483 GYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLD 542
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ D+ G L A + D M S+ + V W ++ H
Sbjct: 543 TALTDMYSKCGELQMAHGVFDRM-SERSIVSWSVMIAGYGMH 583
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 120/312 (38%), Gaps = 62/312 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G++ + +HG V K F SD + S + M+ + +D A AF
Sbjct: 110 CSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAF----------- 158
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
MP RD+V+W++++ ++G E L F ++ + S+ +
Sbjct: 159 -----------DTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSV 207
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + + L G +H VV E IES+ + +L+ M
Sbjct: 208 TEACSELGSLRLGRSVHGYVVRRE----------------------IESNASLNNSLIVM 245
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
Y + G A+ FE + R W +IS ++Q+G ++ F
Sbjct: 246 YGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTM 305
Query: 289 VSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMP 344
V +L C+ G V +G+ H F F+ +++L +G L + K+ + +
Sbjct: 306 VGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIK 365
Query: 345 SKPTCVIWGALL 356
K T + W L+
Sbjct: 366 EK-TILSWNTLI 376
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 47/235 (20%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM++ C +G++++ +HG V + S+ S+ S I M+ K G + AE
Sbjct: 203 TMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAER----- 257
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F+ +P R W MIS + G E L F ++
Sbjct: 258 -----------------LFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEP 300
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ + A A + ++ G +H V+ M+P LD
Sbjct: 301 NQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDF--------------------- 339
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+G AL+ +YA+ G+ + FE + + ++SW LIS F++ G E+ F
Sbjct: 340 --LGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLF 392
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 167/374 (44%), Gaps = 63/374 (16%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
++ I P+YL TY ++ + +G+ LHG V K +D+ I + I M+
Sbjct: 119 LYSQIQPQYL-TYPSVFKAYAQ---LGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYAN 174
Query: 100 CGAVDYAESAF----LRMLNPSLF-----------CWKFGIIRLLIMFQKMPERDLVSWN 144
G + A F L + + + C + R L F M R VSWN
Sbjct: 175 GGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNL--FDDMITRTSVSWN 232
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
+MIS R+G E L F ++ GF +S + +A A + L+ G +H +
Sbjct: 233 SMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRN 292
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
L+V V + +IDMY KCG +E+++++ FE RR +
Sbjct: 293 HFELNVIVVTAIIDMYCKCG--SVENAVEV--------------------FETCPRRGLS 330
Query: 265 SWMVLISAFSQAGVLEKPRFFFF---------------FVSLLSGCSHSGPVTKGKHYFT 309
W +I + G E+ F FF F+ +L+ C H G + K + YF
Sbjct: 331 CWNSIIIGLAMNG-HEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFE 389
Query: 310 -AMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
M K+ ++ C+VD+LG +GLL EA++LI MP KP +IWG+LL +C H N
Sbjct: 390 LMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNV 449
Query: 366 KLAELVMRNLLQLD 379
++A + + +L+
Sbjct: 450 QIARRAAQRVYELN 463
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 29/245 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP +L SWNT+I +R + F+++ + Y + F A A +
Sbjct: 83 LFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGH 142
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL------------ 238
+G LH RVV + D F+ + +I MY G + GK L
Sbjct: 143 AHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINS 202
Query: 239 -VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF----------- 285
+ YA+ G ++ F+ M R +SW +IS + + G ++E F
Sbjct: 203 MIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVS 262
Query: 286 -FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLID 341
F VSLL+ C+H G + GK H + F V ++D+ G + A ++ +
Sbjct: 263 EFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFE 322
Query: 342 EMPSK 346
P +
Sbjct: 323 TCPRR 327
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 154/346 (44%), Gaps = 56/346 (16%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK----------- 122
+HG V K F + + S I ++ K G V+ A FL + ++ W
Sbjct: 1131 IHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGW 1190
Query: 123 ----FGIIRLLIMFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
F I L + P ++VSW+ +I G G E L F + +S+
Sbjct: 1191 CDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSV 1250
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
A+ S A + L G +H VV ++ VG+GLI+M
Sbjct: 1251 TIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINM----------------- 1293
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF---------- 285
Y + GS ++ +L FE + +++ISW +++ + G+ E R F
Sbjct: 1294 -----YTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEP 1348
Query: 286 --FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKL 339
FV++LS CSH+G V +G+ F M K ++ CMVDLLG +GLL EA K+
Sbjct: 1349 DGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKV 1408
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ MP +P +WGALL +C H NT++AE + L+ ++ GS
Sbjct: 1409 VKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGS 1454
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 38/241 (15%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +I C +G+ K+ +HG V + F + + + M+ K G +D A
Sbjct: 974 FTFPLVIRA---CALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKV 1030
Query: 110 FLRMLNPSLFCWKFGIIRLLI---------MFQKMP----ERDLVSWNTMISILTRHGFG 156
F RM S W + + MF+ M E +LV+W +++S R G
Sbjct: 1031 FERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQH 1090
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
ET+ F + G G ++ A S + + G +H VV
Sbjct: 1091 VETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVK------------- 1137
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
G E+ + + +L+ +Y + G+ A + F + +N++SW LIS+++
Sbjct: 1138 ---------GGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADL 1188
Query: 277 G 277
G
Sbjct: 1189 G 1189
>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
Length = 542
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 61/332 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + I+ +HGLV K D I + +DM+ KCG+++ A W
Sbjct: 153 CSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDA--------------W 198
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
K +F+ E D VS ++ L ++GF E++ F+++ +G + + +
Sbjct: 199 K--------IFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAI 250
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
L G +HS ++ + FV +GLI+MY KCG ++ SI+I
Sbjct: 251 LGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCG--DLDDSIKI------- 301
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRFF------FFF 288
F M +RN +SW +I+AF++ G + E+ R F
Sbjct: 302 -------------FCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTF 348
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+SLL C+H G V KG + +MAK ++ C+VD++G +GLL EAKK I+ +P
Sbjct: 349 LSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLP 408
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
KP ++W ALLGAC H N+++ + L
Sbjct: 409 EKPGILVWQALLGACSIHGNSEMGKYAANQLF 440
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 107/256 (41%), Gaps = 43/256 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M E+++V+W +IS L++ F E+L F ++ + +S+ Y ++ A + +
Sbjct: 99 VFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQA 158
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ G +H V + D+ + S L+DMY KC GS +
Sbjct: 159 IREGRQIHGLVWKLGVHFDLCIESALMDMYSKC----------------------GSLED 196
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGP---------- 300
A FE + +S V++ +Q G E+ FV ++ P
Sbjct: 197 AWKIFESAEEVDEVSMTVILVGLAQNGFEEES--IQVFVKMVKNGVVIDPNMISAILGVF 254
Query: 301 -----VTKGKHYFTAMAKFTY-TCYFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ GK + + K ++ + YFV ++++ G L ++ K+ MP + V W
Sbjct: 255 GIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQR-NSVSW 313
Query: 353 GALLGACCSHYNTKLA 368
+++ A H N A
Sbjct: 314 NSMIAAFARHGNGSRA 329
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 63/171 (36%), Gaps = 36/171 (21%)
Query: 135 MPERDLVSWNTMISILTRHG---FGFETLCTFIELWNHG-FGLSSMLYATAFSARASVYD 190
MP +D +SWN+ IS L +G GF F +L+ G + T +A
Sbjct: 1 MPMKDTISWNSRISGLLGNGDIEMGFRV---FKQLYESGIYQFDQATLTTVLTACDKPEF 57
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+HS V ++ VG+ LI Y +CGC
Sbjct: 58 CYVSKMIHSLVFLYGYEREITVGNALITSYFRCGC----------------------CSS 95
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPV 301
F+ MS +N+++W +IS SQ E+ F G GPV
Sbjct: 96 GRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLF-------GKMRDGPV 139
>gi|357124385|ref|XP_003563881.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 670
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 148/335 (44%), Gaps = 63/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +++A +H K F D S+ ++I ++ +CG + AE
Sbjct: 318 CSSLGQLRLAEEVHCYALKTLFKLDTSLLNATITVYGRCGDIATAE-------------- 363
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
I+F + +D++SW +++ ++ ETL F E+ G G +
Sbjct: 364 --------IIFDLLENKDIISWTALLTCYAQNDLPQETLLFFKEMLRKGLGSPIFCITSV 415
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A +S + G +HSR V + GI+ + + ALVTM
Sbjct: 416 LRACSSTTNHAVGRQIHSRAVKL----------------------GIDDADSVENALVTM 453
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFF 288
YA+ GS A F M R +ISW LI++FSQ G + + F + F
Sbjct: 454 YAKCGSVHIALKIFNSMRSRGIISWNALITSFSQHGNEVAAIQLFDLMQEEGICPDDYTF 513
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
V LLS CS G + +G YF M K Y ++ CMVDL +G +A + ID +
Sbjct: 514 VGLLSSCSRMGLIAEGCEYFKQM-KALYNVEPKMEHYTCMVDLFARAGRFSDALEFIDAL 572
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P +P ++W ALL +C +H N +L L + +L++
Sbjct: 573 PCQPDQLVWEALLASCRTHGNVELGRLAAKKILEI 607
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 122/333 (36%), Gaps = 81/333 (24%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F +++G C +I +H KF DES+A + +DM+ KCG VD +
Sbjct: 104 FALGALVSG---CARASDIVAGSQVHASAVKFGVAGDESVAGALVDMYSKCGCVDSS--- 157
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH---------GFGFETL 160
W+ +F P+R +VSW +MI+ L +
Sbjct: 158 -----------WR--------VFALSPQRSVVSWTSMIACLVNNDGSSGHRDAALSLLRK 198
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYD----LEWGPHLHSRVVHMEPSLDVFVGSGL 216
+++W S +L V+D L G +H ++ M +D +G+ L
Sbjct: 199 MLLLKIWPTNATFSCIL---------KVFDAPGLLPGGKQIHGCLLKMGTEVDPALGTAL 249
Query: 217 IDMYLKCGCNGIESSIQIG----------KALVTMYAEGGSTQKADLAFELMSRRNMISW 266
I MY +CG G++ ++ +L YA G + +A F M M
Sbjct: 250 IAMYGRCG--GVDEIAKLSCRIRHDAFSRTSLFVAYARNGYSMEAVWNFREMVMEKM--- 304
Query: 267 MVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCM 323
A Q+ + SLL CS G + + K + T
Sbjct: 305 -----AIDQSTI----------TSLLQVCSSLGQLRLAEEVHCYALKTLFKLDTSLLNAT 349
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ + G G + A+ + D + +K + W ALL
Sbjct: 350 ITVYGRCGDIATAEIIFDLLENKDI-ISWTALL 381
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 33/149 (22%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS------- 183
+F +MP R++VS + +IS ++R G E F ++ G G S +F+
Sbjct: 54 LFDEMPHRNVVSCSVLISNVSRLGALCEAFLLFSDMLLSG-GRGSYDRPNSFALGALVSG 112
Query: 184 -ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
ARAS D+ G +H+ V + D V L+DMY KCGC ++SS ++
Sbjct: 113 CARAS--DIVAGSQVHASAVKFGVAGDESVAGALVDMYSKCGC--VDSSWRV-------- 160
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLIS 271
F L +R+++SW +I+
Sbjct: 161 ------------FALSPQRSVVSWTSMIA 177
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 155/359 (43%), Gaps = 54/359 (15%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT ++++ C +G + + +H + + + + I M+ K G+V+ A
Sbjct: 296 FTITSVLSA---CANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGV 352
Query: 110 FLRMLNPSLFCWKF-----GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFE 158
+ + L F G ++L MF M RD+V+W MI ++G E
Sbjct: 353 MQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDE 412
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
+ F + G +S A S AS+ LE+G +H + + SL
Sbjct: 413 AMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIR---SLQ--------- 460
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAG 277
E S + ++VTMYA GS A F+ + R+ ++W +I A +Q G
Sbjct: 461 ----------EQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHG 510
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYF 320
+ E F FV +LS C+H G V +GK YF + ++
Sbjct: 511 LGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHY 570
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
CMVDLL +GL EA++ I +MP +P + WG+LL AC H N LAEL LL +D
Sbjct: 571 ACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSID 629
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/373 (23%), Positives = 155/373 (41%), Gaps = 47/373 (12%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T T+ N C + +H V K S +A S ++M+ KCG + A + F
Sbjct: 161 TQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVF 220
Query: 111 LRMLNPSLFCWK--------FGIIRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
RM S+ W G + L L +F+ MP+R +VSWN +I+ ++G + L
Sbjct: 221 ERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALW 280
Query: 162 TFIELWNHG------FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
F + ++ F ++S+L A A S+ G +H+ ++ V +
Sbjct: 281 FFSRMLSYSTMAPDEFTITSVLSACANLGMVSI-----GKQVHAYILRSRMPYIGQVTNA 335
Query: 216 LIDMYLKCG----CNGIESSIQIGK-------ALVTMYAEGGSTQKADLAFELMSRRNMI 264
LI MY K G G+ + AL+ Y + G + A F++MS R+++
Sbjct: 336 LISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVV 395
Query: 265 SWMVLISAFSQAGVLEKPRFFFFFV-------------SLLSGCSHSGPVTKGKH-YFTA 310
+W +I + Q G ++ F + ++LS C+ + GK + A
Sbjct: 396 AWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKA 455
Query: 311 MAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ V +V + SG L A+++ D + + V W +++ A H + A
Sbjct: 456 IRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDA 515
Query: 369 ELVMRNLLQLDVK 381
+ +L++ VK
Sbjct: 516 VGLFEEMLRVGVK 528
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 26/238 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPERD VSW M+ L R G E + F+++ G + S+ A+
Sbjct: 118 VFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEA 177
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALVTM 241
G +HS VV + S V V + +++MY KCG E S+ A+V++
Sbjct: 178 RGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSL 237
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF--------------FF 287
A G A FE M R ++SW +I+ ++Q G+ K +F F
Sbjct: 238 DAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFT 297
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDE 342
S+LS C++ G V+ GK H + ++ Y ++ + SG + A+ ++ +
Sbjct: 298 ITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQ 355
>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
[Vitis vinifera]
Length = 656
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 61/332 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + I+ +HGLV K D I + +DM+ KCG+++ A W
Sbjct: 267 CSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDA--------------W 312
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
K +F+ E D VS ++ L ++GF E++ F+++ +G + + +
Sbjct: 313 K--------IFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAI 364
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
L G +HS ++ + FV +GLI+MY KCG ++ SI+I
Sbjct: 365 LGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCG--DLDDSIKI------- 415
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRFF------FFF 288
F M +RN +SW +I+AF++ G + E+ R F
Sbjct: 416 -------------FCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTF 462
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+SLL C+H G V KG + +MAK ++ C+VD++G +GLL EAKK I+ +P
Sbjct: 463 LSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLP 522
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
KP ++W ALLGAC H N+++ + L
Sbjct: 523 EKPGILVWQALLGACSIHGNSEMGKYAANQLF 554
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 29/249 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M E+++V+W +IS L++ F E+L F ++ + +S+ Y ++ A + +
Sbjct: 213 VFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQA 272
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC-----NGIESSIQIGKALVTM---- 241
+ G +H V + D+ + S L+DMY KCG ES+ ++ + +T+
Sbjct: 273 IREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVG 332
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPV 301
A+ G +++ F M + ++ +ISA GV G S +
Sbjct: 333 LAQNGFEEESIQVFVKMVKNGVVIDPNMISAI--LGVF--------------GIDTSLAL 376
Query: 302 TKGKHYFTAMAKFTYTCYFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
K H F + YFV ++++ G L ++ K+ MP + V W +++ A
Sbjct: 377 GKQIHSLIIKKSFG-SNYFVNNGLINMYSKCGDLDDSIKIFCWMPQR-NSVSWNSMIAAF 434
Query: 360 CSHYNTKLA 368
H N A
Sbjct: 435 ARHGNGSRA 443
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 36/175 (20%)
Query: 131 MFQKMPERDLVSWNTMISILTRHG---FGFETLCTFIELWNHG-FGLSSMLYATAFSARA 186
+F MP +D +SWN+ IS L +G GF F +L+ G + T +A
Sbjct: 111 VFDHMPMKDTISWNSRISGLLGNGDIEMGFR---VFKQLYESGIYQFDQATLTTVLTACD 167
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+HS V ++ VG+ LI Y +CGC
Sbjct: 168 KPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGC--------------------- 206
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPV 301
F+ MS +N+++W +IS SQ E+ F G GPV
Sbjct: 207 -CSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLF-------GKMRDGPV 253
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 163/346 (47%), Gaps = 51/346 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL---RMLNPSL 118
C + ++++ LH LVK+ E++ + IDM+ KCG +A F R P
Sbjct: 188 CSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQS 247
Query: 119 -------FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+C + +F +M RD++++N+MI+ G E L F+ + H
Sbjct: 248 WNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDL 307
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ + + SA AS+ L G LH+ I++ L +E+
Sbjct: 308 RVDNFTVVSLLSACASLGALPQGRALHA----------------CIELRL------VETD 345
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---- 287
I IG AL+ MY + G +A + F+ M +R++ +W +I+ + G+ + +F+
Sbjct: 346 IYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRC 405
Query: 288 ---------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY-----FVCMVDLLGLSGLL 333
++++L+ CSHS + +G+ YF M + Y + + CM+DLLG SGLL
Sbjct: 406 DGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEM-RILYNIHPQIEHYGCMIDLLGRSGLL 464
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA L+ MP +P VIW ++L AC H LA+ +LL+++
Sbjct: 465 DEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIE 510
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 36/251 (14%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII---RLLIMFQKMPE 137
+A S I M+ + G AF + W K G++ RLL+ + P
Sbjct: 83 VANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLL--AQAPV 140
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD++SW ++I+ +R E + F + + G + SA + + DLE G L
Sbjct: 141 RDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSL 200
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI----------QIGKALVTMYAEGGS 247
H V S+ + LIDMY KCG G + Q A++ Y + G
Sbjct: 201 HLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGH 260
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
A F+ M R++I++ +I+ + +G L + F VSLLS
Sbjct: 261 VDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSA 320
Query: 295 CSHSGPVTKGK 305
C+ G + +G+
Sbjct: 321 CASLGALPQGR 331
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 135/340 (39%), Gaps = 70/340 (20%)
Query: 65 VGNIKMALHLHGLVKKFYF-VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
G+ ++ + +HG+V K F S + + IDM+ KC D++
Sbjct: 948 TGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHS----------------- 990
Query: 124 GIIRLLIMFQKMPERDLVSWNTMI-SILTRHGF--GFETL-CTFIE-LWNHGFGLSSMLY 178
L +F ++P L N++I S L + F E L C +E + S+ +
Sbjct: 991 -----LAIFNEIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMK 1045
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
A + SA S+ + LHS +V + G E + + +L
Sbjct: 1046 AISLSASPSLTSCQM---LHSCLVKL----------------------GFEMDMAVCSSL 1080
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
+T YA G + L FE + N+I + +ISA ++ G + F
Sbjct: 1081 ITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDN 1140
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLID 341
F+ ++GC +G +G+ M +F CMV+LL G + EA ++++
Sbjct: 1141 VTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMME 1200
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ P + W +LL +C +H L + L+ + K
Sbjct: 1201 QSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRK 1240
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 25/207 (12%)
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIE----SSIQIGKAL-----VTMYAEGGSTQKADLA 254
M PS FV + LI MY + G G I + A+ ++ A+ G A L
Sbjct: 75 MLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLL 134
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
R++ISW LI+A+S+A ++ F + +LS CS +
Sbjct: 135 LAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDL 194
Query: 302 TKG--KHYFTAMAKFTYT-CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G H + + V ++D+ G G A+++ D + W A++
Sbjct: 195 ELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDG 254
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H + +A + + D+ F S
Sbjct: 255 YCKHGHVDVARSLFDQMEVRDIITFNS 281
>gi|242093006|ref|XP_002436993.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
gi|241915216|gb|EER88360.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
Length = 698
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 146/334 (43%), Gaps = 61/334 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C VG ++M +H K +F D + + I ++ +CG AE+
Sbjct: 346 CSSVGQLRMVREVHCYALKTFFKLDTLLLNAIITVYGRCGDTTSAET------------- 392
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F M E+D++SW +++ ++G E L F E+ G G +
Sbjct: 393 ---------VFNLMEEQDIISWTALLTCYAQNGLDEEVLLFFREMLRRGLGSPVFCMTSV 443
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + +L G +HSR V + GI+ + ALVT+
Sbjct: 444 LRACSRTSNLAIGLQIHSRTVKL----------------------GIDDDNSVENALVTL 481
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----------VLEKPRF---FFFF 288
YA GS Q A F MS R++++W L+++FSQ G ++++ + F
Sbjct: 482 YANCGSVQVALKIFNSMSNRDIVTWNALLTSFSQHGNEVAAIQLFDLMQEEEVCPDDYTF 541
Query: 289 VSLLSGCSHSGPVTKGKHYFTAM-AKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMP 344
V LLS CS G V +G YF M AK+ ++ CMVDL +G +A ID MP
Sbjct: 542 VGLLSSCSRMGLVKEGCEYFNEMKAKYNLEPKMVHYTCMVDLFARAGRFCDAMDFIDAMP 601
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+P ++W ALL +C H N L + + +L++
Sbjct: 602 YEPDQILWEALLASCKIHGNLGLGRIAAKKILEI 635
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C ++ + +H V KF DES+A + +DM+ KCG VD + W
Sbjct: 142 CSRARHVDAGVQVHACVAKFGVDEDESVAAALVDMYAKCGWVDSS--------------W 187
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF-GFETLCTFIELWNHGFGLSSMLYAT 180
+ F P+R ++SW +MI+ L G G+ L+ L
Sbjct: 188 R--------AFTLAPQRSVLSWTSMIACLVNQGSSGYHDAAML--LFKKMLALKVWPTNV 237
Query: 181 AFSARASVYD----LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG- 235
FS V++ L G +H ++ + +D +GS L+ MY +CG G++ ++
Sbjct: 238 TFSCILKVFNTPDLLSVGMQIHGCLLKIGTEVDTALGSALMTMYGRCG--GVDEIARLAC 295
Query: 236 ---------KALVTMYAEGGSTQKADLAFELMSRRNM 263
+L+ YA G +A F+ M NM
Sbjct: 296 RIRHDVFSRTSLLGAYARNGYNAEAIGVFKEMILTNM 332
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M R+LVSW+ +IS RHG E F + HG G S +F A V
Sbjct: 83 LFDEMSRRNLVSWSVVISGSARHGVLAEAFALFSHML-HGAGQGSWDRPDSFMLGALVAG 141
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
SR H++ + V G++ + ALV MYA+ G
Sbjct: 142 C-------SRARHVDAGVQVHACVAKF---------GVDEDESVAAALVDMYAKCGWVDS 185
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG 277
+ AF L +R+++SW +I+ G
Sbjct: 186 SWRAFTLAPQRSVLSWTSMIACLVNQG 212
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 255 FELMSRRNMISWMVLISAFSQAGVL-------------------EKPRFFFFFVSLLSGC 295
F+ MSRRN++SW V+IS ++ GVL ++P F +L++GC
Sbjct: 84 FDEMSRRNLVSWSVVISGSARHGVLAEAFALFSHMLHGAGQGSWDRPDSFMLG-ALVAGC 142
Query: 296 SHSGPVTKGKHYFTAMAKF 314
S + V G +AKF
Sbjct: 143 SRARHVDAGVQVHACVAKF 161
>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
Length = 773
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 160/362 (44%), Gaps = 58/362 (16%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
Y + C G F ++ + C +G+++ +H V K D+ + + + ++
Sbjct: 166 YEMVCQFGQLGNFAFSMALKA---CSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLY 222
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
+ G + A L MF MP R+LVSWN++I+ L + F
Sbjct: 223 SEDGCFEEA----------------------LRMFDGMPHRNLVSWNSLIAGLVKKEGVF 260
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E + F + G G S + T A V L G +H+ +V D V + L+
Sbjct: 261 EAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLV 320
Query: 218 DMYLKCGC--------NGIE-SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
DMY KCG NG++ + L+T YA G +A +F+ M
Sbjct: 321 DMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEM---------- 370
Query: 269 LISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCM 323
+ S FS G+ F++LLSGCSH+G G F M K + ++ C+
Sbjct: 371 ICSGFSPDGIT--------FIALLSGCSHAGLADDGCRLFEMM-KMDHGISPTVEHYACL 421
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383
VD+LG +G + EA +++ MP KPT IWG+LL +C H N LAE V + L +L+
Sbjct: 422 VDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNA 481
Query: 384 GS 385
G+
Sbjct: 482 GN 483
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 181/429 (42%), Gaps = 80/429 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+KA + P+ R +H+ ++ + F+ LID D +VF ++ R +
Sbjct: 136 IKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDV 194
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSI------DMHVKCGAV 103
++NT + VR L G+ K F DE K ++ D + K G V
Sbjct: 195 VSWNTAMAAMVR---------EGELAGVRKLF----DEMPEKDTVSWNTILDGYTKAGEV 241
Query: 104 DYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHG 154
+ A F RM ++ W K G + + ++F KMP ++LV+W M+S + G
Sbjct: 242 EAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKG 301
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
E F ++ L + +A A L G +H V V +
Sbjct: 302 LVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCN 361
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAF 273
LIDM+ KCGC +AD F+ + +++ +SW +I F
Sbjct: 362 ALIDMFCKCGC----------------------VNRADYVFDTETVQKDSVSWNSIIGGF 399
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTY 316
+ G +K F +++LS C+H G V +G+ +F+ M +
Sbjct: 400 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQ 459
Query: 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CM+DLLG GL+ EA LI MP +P VIWG+LL AC H N + AE+ + L
Sbjct: 460 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELS 519
Query: 377 QLDVKVFGS 385
+L G+
Sbjct: 520 KLQPSNAGN 528
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGV------------LEKPRFFFFFVSLL 292
GG+ + A AF M RR+ ++ LI A S AGV L F +L+
Sbjct: 111 GGAPRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALI 170
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
S +G + + F M + + M ++ G L +KL DEMP K T V W
Sbjct: 171 DAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMV-REGELAGVRKLFDEMPEKDT-VSW 228
Query: 353 GALL 356
+L
Sbjct: 229 NTIL 232
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 143/343 (41%), Gaps = 63/343 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++++ + G V + + I + I M+ KCG
Sbjct: 229 CGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGE------------------- 269
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++ +F MP RD ++WN IS ++G E + F + +G + +
Sbjct: 270 ---LVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAV 326
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA AS+ L+ G + H D+FV + LIDMY KC
Sbjct: 327 LSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKC------------------ 368
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------- 286
GS + A F M R+N SW +ISA + G ++ F
Sbjct: 369 ----GSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDI 424
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDE 342
FVSLLS C H+G V +G F M+ ++ CMVDLL +G L EA +I++
Sbjct: 425 TFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEK 484
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
MP KP V GAL AC N + E V++ LL+LD G+
Sbjct: 485 MPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGN 527
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 131/324 (40%), Gaps = 62/324 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + I+MA H V K +D S + M+ +CG
Sbjct: 127 CANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCG-------------------- 166
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYAT 180
+ G+ R + F ++ E+DLVSWN+++S + GF E + F L GF M +
Sbjct: 167 ENGVARKV--FDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVS 224
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A + DLE G + VV ++ ++GS LI MY KCG + SS +I
Sbjct: 225 VLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCG--ELVSSRRI------ 276
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
F+ M R+ I+W ISA++Q G+ ++ F
Sbjct: 277 --------------FDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVT 322
Query: 288 FVSLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
++LS C+ G + GK Y T ++D+ G L A+++ ++MP
Sbjct: 323 LTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMP 382
Query: 345 SKPTCVIWGALLGACCSHYNTKLA 368
K W A++ A SH K A
Sbjct: 383 RKNDAS-WNAMISALASHGKAKEA 405
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 146/314 (46%), Gaps = 51/314 (16%)
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCWKF---GIIR------LLIMFQKMPERDLVSWNTM 146
M+ K G V A F M + + W G +R + +F +MPERDL+SW M
Sbjct: 115 MYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAM 174
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
I+ + GF E L F E+ G + A +A ++ L +G H VV +
Sbjct: 175 ITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDF 234
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
+V V + LID+Y +CGC +E + Q+ F+ M +R ++SW
Sbjct: 235 RNNVRVSNSLIDLYCRCGC--VEFARQV--------------------FDTMEKRTVVSW 272
Query: 267 MVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK 313
+I F+ G + +F F L+ CSH G V +G YF M K
Sbjct: 273 NSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQ-MMK 331
Query: 314 FTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN-TKL 367
Y +F C+VDL +G L +A K+++ MP KP V+ G+LL AC +H N T L
Sbjct: 332 TDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMPMKPNEVVIGSLLAACRNHGNHTIL 391
Query: 368 AELVMRNLLQLDVK 381
AE +M+++ LDVK
Sbjct: 392 AERLMKHISDLDVK 405
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 97/240 (40%), Gaps = 61/240 (25%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVR-------------------------------- 61
+D+ +VF ++ R L ++ MI G V+
Sbjct: 153 VDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAA 212
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + L H V F ++ ++ S ID++ +CG V++A
Sbjct: 213 CTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQ------------- 259
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F M +R +VSWN++I +G E+L F ++ GF ++ + A
Sbjct: 260 ---------VFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGA 310
Query: 182 FSARASVYDLEWG---PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
+A + V +E G + + P ++ F L+D+Y + G +E +I++ +++
Sbjct: 311 LTACSHVGLVEEGFQYFQMMKTDYRISPRIEHF--GCLVDLYSRAG--RLEDAIKVVESM 366
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 188/470 (40%), Gaps = 114/470 (24%)
Query: 2 KACGSLKSLPIARKIHAQLIST-----CLISSIFLQL------IDDDYRVFCDIGPRYLF 50
++C L +L + ++H + T +I + L + + D ++F + L
Sbjct: 283 RSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQ 342
Query: 51 TYNTMINGGVR------------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKS 92
+YN +I G R C + L +HGL K S+ +A +
Sbjct: 343 SYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANA 402
Query: 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWK------------------------------ 122
+DM+ KCGA+ A F M++ W
Sbjct: 403 ILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLG 462
Query: 123 ---FGIIRLLIMFQK-------------MPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
F I L+ M+ K + E+ +VSWN +IS + E TF ++
Sbjct: 463 LDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM 522
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
G + YAT A++ +E G +H++++ E D ++ S L+DMY KC
Sbjct: 523 LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKC--- 579
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G+ Q L FE R+ ++W ++ ++Q G+ E+ F
Sbjct: 580 -------------------GNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIF 620
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGL 329
F+++L C H G V KG HYF +M ++ C+VD++G
Sbjct: 621 EYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGR 680
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
SG + +A +LI+ MP + VIW LL C H N ++AE ++LQL+
Sbjct: 681 SGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLE 730
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 80/193 (41%), Gaps = 35/193 (18%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWK-----------FGIIRLLIMFQKMPERDLVS 142
I M++KC +++A F M W G+ + L F MPERD+VS
Sbjct: 84 IQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKL--FDAMPERDVVS 141
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN++IS +G + + F+++ G +A + +S+ D G +H V
Sbjct: 142 WNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAV 201
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
M DV GS L+DMY K C ++ SIQ F M +N
Sbjct: 202 KMGFDCDVVTGSALLDMYAK--CKKLDCSIQF--------------------FHSMPEKN 239
Query: 263 MISWMVLISAFSQ 275
+SW +I+ Q
Sbjct: 240 WVSWSAIIAGCVQ 252
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 127/320 (39%), Gaps = 78/320 (24%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ LHG K F +D I +++DM++KC + A+
Sbjct: 285 CAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQK------------- 331
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +P +L S+N +I R + G GL + + A
Sbjct: 332 ---------LFNSLPNHNLQSYNAIIVGYARS--------------DKGLGLDEVSLSGA 368
Query: 182 FSARASVY-DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
F A A + DLE G +H + ++ V + ++DMY KCG ALV
Sbjct: 369 FRACAVIKGDLE-GLQVHGLSMKSLCQSNICVANAILDMYGKCG------------ALV- 414
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGP 300
+A L FE M R+ +SW +I+A Q G EK F ++
Sbjct: 415 ---------EACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKS------ 459
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
G F +A ++D+ G++ +A+KL D + ++ T V W A++
Sbjct: 460 -RLGLDSFVGIA----------LIDMYSKCGMMEKAEKLHDRL-AEQTVVSWNAIISGFS 507
Query: 361 SHYNTKLAELVMRNLLQLDV 380
++ A+ +L++ V
Sbjct: 508 LQKQSEEAQKTFSKMLEMGV 527
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 116/295 (39%), Gaps = 57/295 (19%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+ +HGL K F D + +DM+ KC +D + +
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCS----------------------IQ 230
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
F MPE++ VSW+ +I+ ++ L F E+ G G+S +A+ F + A +
Sbjct: 231 FFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSA 290
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G LH + + DV +G+ +DMY+KC +
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKC----------------------NNLSD 328
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKG-----K 305
A F + N+ S+ +I ++++ + LSG + V KG +
Sbjct: 329 AQKLFNSLPNHNLQSYNAIIVGYARS-----DKGLGLDEVSLSGAFRACAVIKGDLEGLQ 383
Query: 306 HYFTAMAKF--TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+ +M + C ++D+ G G L EA + +EM S+ V W A++ A
Sbjct: 384 VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSR-DAVSWNAIIAA 437
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 74/198 (37%), Gaps = 26/198 (13%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIESSIQIG-KALVTMYAE 244
G H+R++ E VFV + LI MY+KC +G+ + A++ YA
Sbjct: 61 GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSL 291
G A F+ M R+++SW LIS + G K F F +
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
L CS G K + C V ++D+ L + + MP K
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK-N 239
Query: 349 CVIWGALLGACCSHYNTK 366
V W A++ C + + +
Sbjct: 240 WVSWSAIIAGCVQNDDLR 257
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/438 (24%), Positives = 187/438 (42%), Gaps = 104/438 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+K+C + R++H +I + +I+++ D RVF ++ R +
Sbjct: 41 LKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDV 100
Query: 50 FTYNTMINGGVR-----------------------------CLCVGNIKMALHLHGLVKK 80
++ +I+G VR C G + + +HGL K
Sbjct: 101 VSWTGVISGYVRAGLFDEAVGLFLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFK 160
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
F ++ + +DM+VKCG + A+ +F ++ E+D+
Sbjct: 161 SAFGVGLEVSNALMDMYVKCGCLPGAKQ----------------------VFDELAEKDI 198
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSW ++IS L + E L F ++ + G ++ + SA A + L++G +H
Sbjct: 199 VSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEH 258
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
+ D+ +G+ ++DMY KCGC IE S+QI F M
Sbjct: 259 IDRKAIKWDIQIGTAMVDMYAKCGC--IEMSMQI--------------------FNGMPH 296
Query: 261 RNMISWMVLISAFSQAG----VLE----------KPRFFFFFVSLLSGCSHSGPVTKGKH 306
+N+++W L++ + G VLE +P F+++L+ C H G V +G+
Sbjct: 297 KNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPN-EVTFLAILTACCHCGLVNEGRQ 355
Query: 307 YFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
YF M Y ++ CMVDLL + LL EA +L MP P I GALL AC
Sbjct: 356 YFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKE 415
Query: 362 HYNTKLAELVMRNLLQLD 379
+ NT+L + ++ ++LD
Sbjct: 416 NGNTELPQEILDRFVELD 433
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 152/345 (44%), Gaps = 54/345 (15%)
Query: 63 LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
L G++ A HG +D + ++ M+ G V +AF +++P + C
Sbjct: 141 LLAGSVHAAAFQHG------HATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVT 194
Query: 123 FGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+ L +F MP+RD V+WN M++ R G E L F E+ G +
Sbjct: 195 AMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAV 254
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
S + + +A A + LE G +HS V + V +G+ L+DMY KCG
Sbjct: 255 SEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCG--------- 305
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+VTM E FE M RN+ +W +S + G+ E+ F
Sbjct: 306 ----VVTMSME---------VFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAG 352
Query: 287 ------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEA 336
FV++L GCS +G V +G+ F +M + ++ CMVDL G +G L +A
Sbjct: 353 MEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDA 412
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
I+ MP +P +WGALL A H N L + M L +++ K
Sbjct: 413 VDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESK 457
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 154/346 (44%), Gaps = 56/346 (16%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK----------- 122
+HG V K F + + S I ++ K G V+ A FL + ++ W
Sbjct: 293 IHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGW 352
Query: 123 ----FGIIRLLIMFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
F I L + P ++VSW+ +I G G E L F + +S+
Sbjct: 353 CDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSV 412
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
A+ S A + L G +H VV ++ VG+GLI+M
Sbjct: 413 TIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINM----------------- 455
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF---------- 285
Y + GS ++ +L FE + +++ISW +++ + G+ E R F
Sbjct: 456 -----YTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEP 510
Query: 286 --FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKL 339
FV++LS CSH+G V +G+ F M K ++ CMVDLLG +GLL EA K+
Sbjct: 511 DGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKV 570
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ MP +P +WGALL +C H NT++AE + L+ ++ GS
Sbjct: 571 VKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGS 616
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 38/241 (15%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +I C +G+ K+ +HG V + F + + + M+ K G +D A
Sbjct: 136 FTFPLVIRA---CALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKV 192
Query: 110 FLRMLNPSLFCWKFGIIRLLI---------MFQKMP----ERDLVSWNTMISILTRHGFG 156
F RM S W + + MF+ M E +LV+W +++S R G
Sbjct: 193 FERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQH 252
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
ET+ F + G G ++ A S + + G +H VV
Sbjct: 253 VETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVK------------- 299
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
G E+ + + +L+ +Y + G+ A + F + +N++SW LIS+++
Sbjct: 300 ---------GGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADL 350
Query: 277 G 277
G
Sbjct: 351 G 351
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 154/346 (44%), Gaps = 56/346 (16%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK----------- 122
+HG V K F + + S I ++ K G V+ A FL + ++ W
Sbjct: 293 IHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGW 352
Query: 123 ----FGIIRLLIMFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
F I L + P ++VSW+ +I G G E L F + +S+
Sbjct: 353 CDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSV 412
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
A+ S A + L G +H VV ++ VG+GLI+M
Sbjct: 413 TIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINM----------------- 455
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF---------- 285
Y + GS ++ +L FE + +++ISW +++ + G+ E R F
Sbjct: 456 -----YTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEP 510
Query: 286 --FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKL 339
FV++LS CSH+G V +G+ F M K ++ CMVDLLG +GLL EA K+
Sbjct: 511 DGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKV 570
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ MP +P +WGALL +C H NT++AE + L+ ++ GS
Sbjct: 571 VKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGS 616
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 38/241 (15%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ +I C +G+ K+ +HG V + F + + + M+ K G +D A
Sbjct: 136 FTFPLVIRA---CALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKV 192
Query: 110 FLRMLNPSLFCWKFGIIRLLI---------MFQKMP----ERDLVSWNTMISILTRHGFG 156
F RM S W + + MF+ M E +LV+W +++S R G
Sbjct: 193 FERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQH 252
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
ET+ F + G G ++ A S + + G +H VV
Sbjct: 253 VETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVK------------- 299
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
G E+ + + +L+ +Y + G+ A + F + +N++SW LIS+++
Sbjct: 300 ---------GGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADL 350
Query: 277 G 277
G
Sbjct: 351 G 351
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 120/423 (28%), Positives = 183/423 (43%), Gaps = 93/423 (21%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID-------DDY--RVFCDIGPRYLFT 51
AC L +IH Q+I + L I +Q LID DY RVF I + +
Sbjct: 234 ACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVA 293
Query: 52 YNTMINGGVR------------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+N MI GG++ C G + +HG + F+ + +
Sbjct: 294 WNAMI-GGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETAL 352
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+DM+ KCG + AE +F +M E+++VSWNTM++ ++
Sbjct: 353 VDMYGKCGELKLAEH----------------------VFNQMNEKNMVSWNTMVAAYVQN 390
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
E L F + N ++ A+ A A + G +HS ++ +
Sbjct: 391 EQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKL--------- 441
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
G+ S+ I A+V MYA+ G Q A F+ M ++++SW +I A+
Sbjct: 442 -------------GLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAY 488
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-- 318
+ G FF FVSLL+ CS SG + +G +F +M K Y
Sbjct: 489 AIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSM-KVEYGIDP 547
Query: 319 ---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ CM+DLLG +G L EAK I+EMP PT IWG+LL A +H + LAEL R++
Sbjct: 548 GIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHI 607
Query: 376 LQL 378
L L
Sbjct: 608 LSL 610
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 151/363 (41%), Gaps = 63/363 (17%)
Query: 27 SSIFLQLIDDDYRVFCDIGPRYLFTYNTMIN--GGVRCLCVGNIKMALHLHGLVKKFYFV 84
+ +F + ID YR+ C+ FT+ +I G + L VG +HG + K F
Sbjct: 102 NGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQ-----KVHGKLIKIGFD 156
Query: 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144
D + IDM++K G ++ AE +F +MP RDLVSWN
Sbjct: 157 LDVYVCNFLIDMYLKIGFIELAEK----------------------VFDEMPVRDLVSWN 194
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
+M+S G G +L F E+ G +A A + + L G +H +V+
Sbjct: 195 SMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRS 254
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
E LD+ V + LIDMY KC G A+ F + +N++
Sbjct: 255 ELELDIMVQTSLIDMYGKC----------------------GKVDYAERVFNRIYSKNIV 292
Query: 265 SWMVLISAFSQAGVLEKPRFF---FFFVSLLSGCSHSGPVTKGK--HYFTAMAKF-TYTC 318
+W +I G+ E + ++LL CS SG + +GK H F F Y
Sbjct: 293 AWNAMI-----GGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLV 347
Query: 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+VD+ G G L A+ + ++M K V W ++ A + K A + +++L
Sbjct: 348 LETALVDMYGKCGELKLAEHVFNQMNEK-NMVSWNTMVAAYVQNEQYKEALKMFQHILNE 406
Query: 379 DVK 381
+K
Sbjct: 407 PLK 409
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 100/264 (37%), Gaps = 39/264 (14%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L MF+KM D WN +I T +G E + + + G + + A +
Sbjct: 78 LDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGEL 137
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L G +H +++ + LDV+V + LIDMYLK G
Sbjct: 138 LALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGF----------------------I 175
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG-------------VLEKPRFFFFFVSLLSGC 295
+ A+ F+ M R+++SW ++S + G L F +S L C
Sbjct: 176 ELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGAC 235
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
S + G + + + ++D+ G G + A+++ + + SK V W
Sbjct: 236 SIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSK-NIVAW 294
Query: 353 GALLGACCSHYNTKLAELVMRNLL 376
A++G + M NLL
Sbjct: 295 NAMIGGMQEDDKVIPDVITMINLL 318
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 185/425 (43%), Gaps = 82/425 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL---------QLID--DDYRVFCDIG--PR 47
+KACG +HA+ + L + +F +++D +VF + G R
Sbjct: 120 LKACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSR 179
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS------IDMHVKCG 101
L ++N+M+ G V C G + GL ++ + DE K + ID + K G
Sbjct: 180 DLVSWNSMVAGYVGC---GEM-------GLAQEMF---DEMPQKDTFSWATLIDGYGKQG 226
Query: 102 A--VDYAESAFLRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISIL 150
VD A F +M L CW I +F++MPER+++SW+ +I
Sbjct: 227 GAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGH 286
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
G E L F + G + A SA A + LE G LHS + + DV
Sbjct: 287 VSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDV 346
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
V + LIDMY+KCGC + A L FE M+ R++++W V+I
Sbjct: 347 VVQTALIDMYVKCGCLDL----------------------AMLIFESMAERSVVTWNVMI 384
Query: 271 SAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAK---- 313
G L+ F + +L+ C+H+G V++G F M K
Sbjct: 385 VGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGI 444
Query: 314 FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
++ +VDLLG +G L +A+ I+ MP +PT +WG+LL AC SH +LAEL +
Sbjct: 445 DPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVE 504
Query: 374 NLLQL 378
L L
Sbjct: 505 RLADL 509
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 151/339 (44%), Gaps = 61/339 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ +HG + K +D + + IDM+ KCG V A
Sbjct: 611 CGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANK------------- 656
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
MF+K+ E+ LV+WN+MI +++G+ E + F +++ + + + + +
Sbjct: 657 ---------MFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSV 707
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + + LE G +H +++ D ++ + L DMY KC
Sbjct: 708 IQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKC------------------ 749
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G Q A F+ MS R+++SW V+I+ + G + F F
Sbjct: 750 ----GELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITF 805
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+ +LS CSH+G V +GK YF +M++F +F CMVDLL +G L A ++I +P
Sbjct: 806 MHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPF 865
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWGALL C H + + + +NLL +D G
Sbjct: 866 PANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTG 904
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 108/248 (43%), Gaps = 40/248 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ + E+ ++SWNT+ISI TR+G E L F+++ G S A++ SA ++
Sbjct: 557 VFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISF 616
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ G +H ++ + + FV + LIDMY KCG
Sbjct: 617 SQLGAQIHGYIIKT-GNFNDFVQNALIDMYAKCGF----------------------VHS 653
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSH 297
A+ FE + +++++W +I FSQ G +E F F+S++ CSH
Sbjct: 654 ANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSH 713
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G + KGK H+ M Y + D+ G L A + D M S+ + V W
Sbjct: 714 LGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRM-SERSIVSWSV 772
Query: 355 LLGACCSH 362
++ H
Sbjct: 773 MIAGYGMH 780
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+G AL+ +YA+ G+ + FE + + ++SW LIS F++ G E+ F
Sbjct: 537 LGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLF 589
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 174/375 (46%), Gaps = 61/375 (16%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D+ +F ++ R + ++ M++G + G + +A +K + V E S
Sbjct: 190 VDEARTLFDEMPKRNVVSWTAMVSGYAQN---GQVNLA-------RKLFEVMPERNEVSW 239
Query: 94 IDM---HVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLV 141
M +++ G ++ AE F M + L F + + +F +M ERD
Sbjct: 240 TAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDG 299
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
+W+ +I ++ F E L TF E+ + G + + + A++ L++G +H +
Sbjct: 300 TWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAM 359
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
+ +D++ S LI MY+KCG + KA F + +
Sbjct: 360 LRRSFDMDIYAVSALITMYIKCG----------------------NLDKAKRVFHMFEPK 397
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF 308
+++ W +I+ ++Q G+ E+ F ++ L+ CS++G V +G+ F
Sbjct: 398 DVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIF 457
Query: 309 TAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
+M + ++ CMVDLLG +GL+ EA LI MP +P VIWGAL+GAC H N
Sbjct: 458 NSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKN 517
Query: 365 TKLAELVMRNLLQLD 379
++AE+ + LL+L+
Sbjct: 518 AEIAEISAKKLLELE 532
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 46/258 (17%)
Query: 129 LIMFQKMPERDLVSWNTMISILT--RHGFGF-----------ETLCTFIELWN----HGF 171
L +F +MP RDL S+N +IS L+ RH ++ +F L HG
Sbjct: 68 LRVFHRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGL 127
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
++ R H+ V+ L F+ +G +D K
Sbjct: 128 LADAIQLFRQMPERN---------HISYTVL-----LGGFLDAGRVDEARKLFDEMPAKD 173
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
+ A+++ Y + G +A F+ M +RN++SW ++S ++Q G + R F
Sbjct: 174 VVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPE 233
Query: 287 ----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC--MVDLLGLSGLLGEAKKLI 340
+ ++L G +G + + F AM C M+ G G++ AK +
Sbjct: 234 RNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAA---CNGMIVGFGQQGMVDAAKSVF 290
Query: 341 DEMPSKPTCVIWGALLGA 358
D M + W A++ A
Sbjct: 291 DRMCERDDGT-WSAIIKA 307
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/445 (23%), Positives = 181/445 (40%), Gaps = 104/445 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC + + R+IH ++ S ++ L+DD +VF I R L
Sbjct: 310 LKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDL 369
Query: 50 FTYNTMING---------GVRCLC-----------------------VGNIKMALHLHGL 77
+N +I+G + C + I +H L
Sbjct: 370 VLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHAL 429
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+K F+SD + ID + KC ++YA +F+K
Sbjct: 430 AEKLGFLSDSHVVNGLIDSYWKCDCLNYAYR----------------------VFEKHGS 467
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D++++ +MI+ L++ G + + F+E+ G + ++ +A AS+ E G +
Sbjct: 468 YDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQV 527
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ + DVF G+ L+ Y KCG S + ADLAF
Sbjct: 528 HAHLIKRQFMSDVFAGNALVYTYAKCG----------------------SIEDADLAFSG 565
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKG 304
+ + ++SW +I +Q G ++ F S+L C+H+G V +
Sbjct: 566 LPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEA 625
Query: 305 KHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
K YF +M + ++ CM+DLLG +G L +A +L++ MP + +WGALL A
Sbjct: 626 KRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASR 685
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
H + +L L L L+ + G+
Sbjct: 686 VHRDPELGRLAAEKLFILEPEKSGT 710
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 95/427 (22%), Positives = 147/427 (34%), Gaps = 104/427 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID-----DDYR----VFCDIGPRYL 49
+ AC + L RK+HA +I T +F L+D D R VF + +
Sbjct: 209 VNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDV 268
Query: 50 FTYNTMINGGV--------------------------------RCLCVGNIKMALHLHGL 77
++N I+G V C G + +HG
Sbjct: 269 VSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGF 328
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ K SD IA +DM+ K G +D A+ +F W +P+
Sbjct: 329 MVKANADSDNYIAFGLVDMYAKHGLLDDAKK---------VFDW-------------IPQ 366
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RDLV WN +IS + E L F + GF ++ A + AS+ + +
Sbjct: 367 RDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQV 426
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ + D V +GLID Y KC C A FE
Sbjct: 427 HALAEKLGFLSDSHVVNGLIDSYWKCDC----------------------LNYAYRVFEK 464
Query: 258 MSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKG 304
++I++ +I+A SQ E + F F SLL+ C+ +G
Sbjct: 465 HGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQG 524
Query: 305 KHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K + K + +V G + +A +P K V W A++G
Sbjct: 525 KQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGV-VSWSAMIGGLAQ 583
Query: 362 HYNTKLA 368
H + K A
Sbjct: 584 HGHGKRA 590
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 125/343 (36%), Gaps = 76/343 (22%)
Query: 46 PR-YLFTYNTMINGGVRC---------LCVGNIKMALHLHGLVKKFYFVSDESIAKSSID 95
PR L + +M + VRC C + LH L D +A + +
Sbjct: 84 PRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGTQLHALAMATGLGGDIFVANALVA 143
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF 155
M+ G VD A RM+ C ER+ VSWN ++S ++
Sbjct: 144 MYGGFGFVDEA-----RMVFDEAGC----------------ERNTVSWNGLMSAYVKNDR 182
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
+ F E+ G + ++ +A DLE G +H+ V+ DVF +
Sbjct: 183 CSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANA 242
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA--- 272
L+DMY K G + A + F + +++SW IS
Sbjct: 243 LVDMYSKL----------------------GDIRMAAVVFGKVPETDVVSWNAFISGCVL 280
Query: 273 -------------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYT 317
+G++ F S+L C+ SG G+ H F A
Sbjct: 281 HGHDQHALELLLQMKSSGLVPN---VFTLSSILKACAGSGAFNLGRQIHGFMVKANADSD 337
Query: 318 CYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
Y +VD+ GLL +AKK+ D +P + V+W AL+ C
Sbjct: 338 NYIAFGLVDMYAKHGLLDDAKKVFDWIPQR-DLVLWNALISGC 379
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 180/414 (43%), Gaps = 81/414 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
++ACG LK +K+H Q++ L S +F++ I+ + ++ L
Sbjct: 112 IQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDL 171
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
YN ++ VR VG I +A L + + VS ++ I H G V A+
Sbjct: 172 VPYNVLLAEYVR---VGEINLAHDLFDRMPERDLVSWNTM----IHGHASLGDVGTAKK- 223
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F + ERDL+SW++MI+ + E L F E+
Sbjct: 224 ---------------------LFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLA 262
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + SA V L G +H + +D+ +G+ L+DMY KCG I+
Sbjct: 263 NVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCG--DID 320
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------- 280
+S+++ F M+ R++ +W +I + G E
Sbjct: 321 NSLRV--------------------FNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKM 360
Query: 281 -----KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSG 331
KP F+ +LS CSH G V +G YFT+M+K ++ C+VD+LG +G
Sbjct: 361 ISEDIKPN-DVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAG 419
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
L EA +LI MP P ++W ALLGAC + N ++AE NLL+L+ V G+
Sbjct: 420 RLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGN 473
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 10/166 (6%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVY 189
+F ++P D WNTMI E++ F ++ + + S + A +
Sbjct: 60 VFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLK 119
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA---------LVT 240
D G LH++V+ + D+FV + LI+MY K G I +I A L+
Sbjct: 120 DPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLA 179
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
Y G A F+ M R+++SW +I + G + + F
Sbjct: 180 EYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLF 225
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 151/336 (44%), Gaps = 50/336 (14%)
Query: 74 LHGLVKKFYFVSDESIAKSSI-DMHVKCGAVDYAESAFLRMLNPSLFCWKF---GIIR-- 127
LHG K + + ++I M+ K G V A F M + + W G +R
Sbjct: 95 LHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSG 154
Query: 128 ----LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
MF KMPERDL+SW MI+ GF E L F E+ G + A +
Sbjct: 155 QVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALN 214
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A ++ L +G +H V+ + +V V + LID+Y +CGC +E + Q+
Sbjct: 215 ACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGC--VEFARQV--------- 263
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
F+ M +R ++SW +I F+ G + +F F
Sbjct: 264 -----------FDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTG 312
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
L+ CSH G V +G YF M ++ C+VDL +G L +A KL+ MP K
Sbjct: 313 ALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMK 372
Query: 347 PTCVIWGALLGACCSH-YNTKLAELVMRNLLQLDVK 381
P V+ G+LL AC +H NT LAE +M++L L+VK
Sbjct: 373 PNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVK 408
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 59/226 (26%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMING--------------------GVR------------ 61
+D+ ++F + R L ++ MING GV+
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNA 215
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + L +H V F ++ ++ S ID++ +CG V++A
Sbjct: 216 CTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQ------------- 262
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM +R +VSWN++I +G E+L F ++ F ++ + A
Sbjct: 263 ---------VFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGA 313
Query: 182 FSARASVYDLEWGPHLHSRVV---HMEPSLDVFVGSGLIDMYLKCG 224
+A + V +E G ++ + P ++ + L+D+Y + G
Sbjct: 314 LTACSHVGLVEEGLRYFQIMISDYRISPRIEHY--GCLVDLYSRAG 357
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 19/172 (11%)
Query: 115 NPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174
+P+L K + + + VSW + I++LTR+G E F ++ G +
Sbjct: 11 SPALITRKRHANPKIQRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPN 70
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234
+ + S PS +G L K G + + + +
Sbjct: 71 HITFIAILSGCGDF-----------------PSGSEALGDLLHGYACKLGLD--RNHVMV 111
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G A++ MY++ G +KA F+ M +N ++W +I + ++G ++ F
Sbjct: 112 GTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMF 163
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 133/271 (49%), Gaps = 40/271 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + PE+ L SWN MIS T++G + F E+ + + + SA A +
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGA 430
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H GLI +ES++ + ALV MYA+ GS +
Sbjct: 431 LSIGKWVH----------------GLIK------SERLESNVYVSTALVDMYAKCGSIVE 468
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F+LM +N+++W +I+ + G ++ F+ F+S+L CSH
Sbjct: 469 ARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSH 528
Query: 298 SGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
SG V++G F +MA + ++ CMVD+LG +G L A + I+ MP +P +WG
Sbjct: 529 SGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWG 588
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALLGAC H NT++A + + L QLD + G
Sbjct: 589 ALLGACMIHKNTEMANVASKRLFQLDPENVG 619
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MPERD V WNTMIS +R+ + +++ F+++ + G S AT +A A + +
Sbjct: 170 VFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQE 229
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG--CNG 227
G + DV+V +GLI +Y KCG C G
Sbjct: 230 YRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKG 268
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 38/263 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
I+F ++ + DL+S+N MIS T + + F EL G ++S + VY
Sbjct: 270 ILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS----STLVGLIPVY 325
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L + SR++ ++ LK GI + AL T+Y Q
Sbjct: 326 -LPFNHLQLSRLIQ--------------NLSLKI---GIILQPSVSTALTTVYCRLNEVQ 367
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSH 297
A F+ +++ SW +IS ++Q G+ ++ F S+LS C+
Sbjct: 368 FARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQ 427
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G ++ GK H + Y +VD+ G + EA++L D M K V W A
Sbjct: 428 LGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-NVVTWNA 486
Query: 355 LLGACCSHYNTKLAELVMRNLLQ 377
++ H + K A + +LQ
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQ 509
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + +HGL+K S+ ++ + +DM+ KCG++ A
Sbjct: 425 CAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQ------------- 471
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS-----SM 176
+F M ++++V+WN MI+ HG G E L F E+ G + S+
Sbjct: 472 ---------LFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSI 522
Query: 177 LYATAFSARAS 187
LYA + S S
Sbjct: 523 LYACSHSGLVS 533
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F K+ + DL +N +I + +G ++ + L + YA A SA + +
Sbjct: 68 LFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLE 127
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D G LH+ + +G+ S++ +G A+V +Y + +
Sbjct: 128 DERVGVLLHAHSI----------------------VDGVASNLFVGSAIVDLYFKFTRAE 165
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLE 280
A F++M R+ + W +IS FS+ E
Sbjct: 166 LARKVFDVMPERDTVLWNTMISGFSRNSYFE 196
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 133/271 (49%), Gaps = 40/271 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + PE+ L SWN MIS T++G + F E+ + + + SA A +
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGA 430
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H GLI +ES++ + ALV MYA+ GS +
Sbjct: 431 LSIGKWVH----------------GLIK------SERLESNVYVSTALVDMYAKCGSIVE 468
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F+LM +N+++W +I+ + G ++ F+ F+S+L CSH
Sbjct: 469 ARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSH 528
Query: 298 SGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
SG V++G F +MA + ++ CMVD+LG +G L A + I+ MP +P +WG
Sbjct: 529 SGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWG 588
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALLGAC H NT++A + + L QLD + G
Sbjct: 589 ALLGACMIHKNTEMANVASKRLFQLDPENVG 619
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MPERD V WNTMIS +R+ + +++ F+++ + G S AT +A A + +
Sbjct: 170 VFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQE 229
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG--CNG 227
G + DV+V +GLI +Y KCG C G
Sbjct: 230 YRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKG 268
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 38/263 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
I+F ++ + DL+S+N MIS T + + F EL G ++S + VY
Sbjct: 270 ILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS----STLVGLIPVY 325
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L + SR++ ++ LK GI + AL T+Y Q
Sbjct: 326 -LPFNHLQLSRLIQ--------------NLSLKI---GIILQPSVSTALTTVYCRLNEVQ 367
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSH 297
A F+ +++ SW +IS ++Q G+ ++ F S+LS C+
Sbjct: 368 FARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQ 427
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G ++ GK H + Y +VD+ G + EA++L D M K V W A
Sbjct: 428 LGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-NVVTWNA 486
Query: 355 LLGACCSHYNTKLAELVMRNLLQ 377
++ H + K A + +LQ
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQ 509
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 27/131 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + +HGL+K S+ ++ + +DM+ KCG++ A
Sbjct: 425 CAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQ------------- 471
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF---GLS--SM 176
+F M ++++V+WN MI+ HG G E L F E+ G G++ S+
Sbjct: 472 ---------LFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSI 522
Query: 177 LYATAFSARAS 187
LYA + S S
Sbjct: 523 LYACSHSGLVS 533
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F K+ + DL +N +I + +G ++ + L + YA A SA + +
Sbjct: 68 LFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLE 127
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D G LH+ + +G+ S++ +G A+V +Y + +
Sbjct: 128 DERVGVLLHAHSI----------------------VDGVASNLFVGSAIVDLYFKFTRAE 165
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLE 280
A F++M R+ + W +IS FS+ E
Sbjct: 166 LARKVFDVMPERDTVLWNTMISGFSRNSYFE 196
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 164/374 (43%), Gaps = 60/374 (16%)
Query: 45 GPRYLFTYNTMINGGV------------RCLCVGNIKMALHLHGLVKKFYFVSDESIAKS 92
GP+ L +++M + G+ C + +++ +HG V + F +
Sbjct: 605 GPKSLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGEVIRTGFHRLGKVRIG 664
Query: 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSW 143
++++ G + A+ F M ++ W + R L F++M ER +VSW
Sbjct: 665 VVELYTSGGRMGDAQKVFDEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSW 724
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
N+MIS L++ G E L F E+ + GF T AS+ L+ G +HS
Sbjct: 725 NSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTMLPISASLGVLDTGKWIHSTAE- 783
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
+GLI + I +G ALV Y + G + A F M RRN+
Sbjct: 784 ---------SNGLIKDF-----------ITVGNALVDFYCKSGDLEAATAIFRKMQRRNV 823
Query: 264 ISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFT 309
+SW +IS + G E F F+ +L+ CS++G V +G+ F
Sbjct: 824 VSWNTMISGSAVNGKGESGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFG 883
Query: 310 -AMAKFT---YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
M +F T ++ MVDL+ SG + EA + + MP +WG+LL AC SH +
Sbjct: 884 LMMERFKLEPRTEHYGAMVDLMSRSGRIREAFEFLRNMPVNANAAMWGSLLSACRSHGDV 943
Query: 366 KLAELVMRNLLQLD 379
KLAEL L++++
Sbjct: 944 KLAELAAMELVKIE 957
>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Brachypodium distachyon]
Length = 614
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/438 (24%), Positives = 181/438 (41%), Gaps = 103/438 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+ AC ++L R++HA ++ ++L +DD V + R +
Sbjct: 48 ITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNV 107
Query: 50 FTYNTMING----------------GVRCLCVGN----------------IKMALHLHGL 77
++ MI+G +R C N I+ +H L
Sbjct: 108 VSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSL 167
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V K F S + S +DM+ K G + A +F +PE
Sbjct: 168 VVKTNFESHMFVGSSLLDMYGKSGNIQEARK----------------------VFDMLPE 205
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD VS +IS + G E L F +L++ G + + + T ++ + + L +G +
Sbjct: 206 RDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQV 265
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H ++ E + + + LIDMY KCG K L + F+
Sbjct: 266 HGLILRKELPFFIVLQNSLIDMYSKCG-----------KLLYSRRV-----------FDN 303
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGK 305
M +R+ ISW ++ + + G+ ++ F +++LSGCSH G V +G
Sbjct: 304 MPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVKPDSVTLLAVLSGCSHGGLVDEGL 363
Query: 306 HYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
F + K + ++ C++DLLG SG L +A LI+ MP +PT IWG+LLGAC
Sbjct: 364 DIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRV 423
Query: 362 HYNTKLAELVMRNLLQLD 379
H N + E+V + LL ++
Sbjct: 424 HINVSVGEVVAQKLLDME 441
>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
Length = 653
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/441 (24%), Positives = 185/441 (41%), Gaps = 106/441 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTC--LISSIFLQLID--------DDYRVFCDIGP-RYL 49
+KACG L L I R+IH + T +++ + +ID ++ ++ P R L
Sbjct: 80 LKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNL 139
Query: 50 FTYNTMINGGV--------------------------------RCLCVGNIKMALHLHG- 76
++N MI G C +G IK +H
Sbjct: 140 ISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAF 199
Query: 77 -LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM 135
+ F + + ++A + ID++VKCG + A +F +
Sbjct: 200 LITGGFLYSVNTAVAGALIDLYVKCGKLFMARR----------------------VFSHI 237
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
E+ ++SW +I + G E++ F +L + + ++ A ++ G
Sbjct: 238 EEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGK 297
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+H+ + + +D+ V + ++DMYLKCG +A+ F
Sbjct: 298 QMHAFAIKVPSGVDISVCNSILDMYLKCGM----------------------INEAERLF 335
Query: 256 ELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVT 302
M RN+ISW V+I+ + + G+ E R F ++++L GCSHSG V
Sbjct: 336 SEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVE 395
Query: 303 KGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
KG+ YF+ + + ++ CMVDLLG +G L EAK L+D MP + IW LL A
Sbjct: 396 KGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSA 455
Query: 359 CCSHYNTKLAELVMRNLLQLD 379
C H + +L + V LL+LD
Sbjct: 456 CRVHGDLELGKEVGGILLRLD 476
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 110/272 (40%), Gaps = 41/272 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M +R++VSW ++ ++G E+L F ++ G + ++T A +
Sbjct: 29 VFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNG 88
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G +H V + VG+ +IDMY KC G +
Sbjct: 89 LDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC----------------------GRINE 126
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLSGCSH 297
A FE+M RN+ISW +I+ ++ AG EK F F S L CS
Sbjct: 127 AACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSD 186
Query: 298 SGPVTKGK--HYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
G + +G H F F Y T ++DL G L A+++ + K + W
Sbjct: 187 LGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHV-ISW 245
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
AL+ N + + R L + ++V G
Sbjct: 246 TALILGYAQEGNLAESMELFRQLRESSIQVDG 277
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 144/335 (42%), Gaps = 65/335 (19%)
Query: 66 GNI---KMALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
GN+ K+ +HG+ +++ + + + S IDM+VKC +D A
Sbjct: 221 GNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARK------------- 267
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+ +R++V W T+IS + E F ++ + A
Sbjct: 268 ---------LFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAI 318
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ +S+ L G +H ++ +D + IDMY +CG
Sbjct: 319 LVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCG----------------- 361
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
+ Q A F++M RN+ISW +I+AF G+ E+ F F
Sbjct: 362 -----NIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTF 416
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
VSLLS CSHSG V +G F +M + ++ CMVDLLG +G +GEAK ID MP
Sbjct: 417 VSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMP 476
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
KP WGALL AC H LA + LL ++
Sbjct: 477 VKPMASAWGALLSACRIHKEVDLAGEIAEKLLSME 511
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 115/299 (38%), Gaps = 77/299 (25%)
Query: 85 SDESIAKSSI-DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143
DE + SS+ + +++ +D+A S+F R+ P CWK R+ SW
Sbjct: 36 EDEVVLGSSLTNAYIQSNRLDFATSSFNRI--P---CWK---------------RNRHSW 75
Query: 144 NTMISILTRHGFGFETLCTFIE---LWN----HGFGLSSMLYATAFSARASVYDLEWGPH 196
NT++S G+ C + + L+N H G+ S A A + LE G
Sbjct: 76 NTILS-----GYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGIL 130
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H + NG++ + +LV MYA+ G+ + A F+
Sbjct: 131 IHGLAMK----------------------NGLDKDDYVAPSLVEMYAQLGTMESAQKVFD 168
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFFFF---------------VSLLSGCSH--SG 299
+ RN + W VL+ + + + P F F + L+ C + +G
Sbjct: 169 EIPVRNSVLWGVLMKGYLKYS--KDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAG 226
Query: 300 PVTKGKHYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V K H + F ++ ++D+ LL A+KL E V+W L+
Sbjct: 227 KVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLF-ETSVDRNVVMWTTLI 284
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 170/399 (42%), Gaps = 72/399 (18%)
Query: 31 LQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALH-------------LHGL 77
L +++ Y++F ++ + ++ TMI+ VR + K L +HG
Sbjct: 273 LSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGY 332
Query: 78 VK-------KFYF----VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF--- 123
++ + F V D + I +V CG +D A F +M N + W
Sbjct: 333 LQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIA 392
Query: 124 -----GIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
G +R + +F+KM +R+ VSWN++IS ++G E L F+ +
Sbjct: 393 GYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWST 452
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
YA SA A + L G HS + D F G+ LI Y KCG
Sbjct: 453 YACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCG------------- 499
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
+A F+ M +++SW LI ++ G + F
Sbjct: 500 ---------RILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPD 550
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLI 340
FV +LS CSH+G + +G +F +M K ++ CMVDLLG SG L EA ++I
Sbjct: 551 EVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEII 610
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
M +P +WGA+LGAC H N +LA+L L +L+
Sbjct: 611 QGMQVQPNAGVWGAMLGACRVHKNHELAQLAAEKLYELE 649
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 54/379 (14%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
+ F ++ R + ++N M+ G VR G++ A L V VS ++ ++ +
Sbjct: 188 KFFDEMPARDMVSWNLMLEGYVRA---GDVDSAAGLFAGVPSPNVVSWVTL----LNGYC 240
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKF---GIIRLLIM------FQKMPERDLVSWNTMISI 149
+ G + A F R+ + ++ W G +RL M F +MP+++ +SW TMIS
Sbjct: 241 RAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISA 300
Query: 150 LTRHG-----------FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
L R G F++ L HG+ S M+ ++D G +
Sbjct: 301 LVRGGKLQEAKDLLDKMPFDSFAAKTALM-HGYLQSKMIDDARL-----IFD---GLEVR 351
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
V + +V G++D + + ++ YA G +KA F M
Sbjct: 352 DAVC-WNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKM 410
Query: 259 SRRNMISWMVLISAFSQAGV-LEKPRFFFF------------FVSLLSGCSHSGPVTKGK 305
++RN +SW +IS F Q G+ +E + F + LS C+ + G+
Sbjct: 411 NQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGR 470
Query: 306 HYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ + +A+ Y + ++ G + EA+++ DEMP+ P V W AL+ S+
Sbjct: 471 QFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPA-PDIVSWNALIDGYASN 529
Query: 363 YNTKLAELVMRNLLQLDVK 381
+ A V R + DV+
Sbjct: 530 GHGTEAISVFREMEDNDVR 548
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 110/280 (39%), Gaps = 64/280 (22%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGFGLSSMLYATAFSAR-ASV 188
+F MP R+ VS+N M+S L RHG + F E+ + ++M+ A + R A
Sbjct: 33 LFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADA 92
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI----------ESSIQIGKAL 238
DL P+ D F + ++ Y + G G+ + A+
Sbjct: 93 RDL----------FDAMPARDGFSWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAM 142
Query: 239 VTMYAEGGS--------------------------TQKADLA-----FELMSRRNMISWM 267
++ YA+ G T+ ++ F+ M R+M+SW
Sbjct: 143 ISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWN 202
Query: 268 VLISAFSQAGVLEKPRFFFF---------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC 318
+++ + +AG ++ F +V+LL+G +G + + + F +
Sbjct: 203 LMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAA 262
Query: 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+ V + L LS + EA KL EMP K + W ++ A
Sbjct: 263 WNVMLSGYLRLSH-MEEAYKLFTEMPDK-NSISWTTMISA 300
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
L+ + SG + + F +M T + M+ L G + +A++L DE+P + T V
Sbjct: 18 LTRLARSGQLAAARRLFDSMPSRN-TVSYNAMLSALARHGRIADARRLFDEIPRRNT-VS 75
Query: 352 WGALLGACCSH 362
W A++ AC H
Sbjct: 76 WNAMIAACSDH 86
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 131/272 (48%), Gaps = 39/272 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP R+ VSW+ M++ + G G E L F + G + +A A +
Sbjct: 299 LFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGV 358
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H YLK N I ++ +G ALV MYA+ G Q
Sbjct: 359 LEQGKWVHG--------------------YLKA--NNIRITVFLGTALVDMYAKCGEMQL 396
Query: 251 ADLAFELMSRRNMISWMVLISA-------------FSQAGVLEKPRFFFFFVSLLSGCSH 297
A F++M +N+++W +I FSQ L F+ L C+H
Sbjct: 397 AMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTH 456
Query: 298 SGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G V KG+ F +M + ++ CMVDLL +GLL EA++++++MP KP +IWG
Sbjct: 457 TGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWG 516
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
AL+ C H N +LAE V+++ ++L+ G+
Sbjct: 517 ALMAGCRFHKNVELAEYVVKHWIELEPDKSGA 548
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 17/160 (10%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
L+T YA G A F+ M RN +SW +++ + QAG + F
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342
Query: 287 --FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLID 341
V +L+ C+ G + +GK H + T + +VD+ G + A ++
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
M K + W ++ H A + + +L VK
Sbjct: 403 VMKEK-NVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 441
>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 585
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 149/336 (44%), Gaps = 63/336 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + +HG+V KF V + S +DM+ KC D
Sbjct: 122 CANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEG--------------- 166
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT-FIELWNHGFGLSSMLYAT 180
+ +FQ + +RD+V+WN ++ ++ FE C F + G ++T
Sbjct: 167 -------VKLFQCVGDRDVVTWNVLVMGFVQND-KFEEACNYFWVMRREGILPDEASFST 218
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+ AS+ L G +H +++ + Y+K C I +L+T
Sbjct: 219 VLHSSASLAALHQGTAIHDQIIKLG--------------YVKNMC--------ILGSLIT 256
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
MYA+ GS A FE + N+ISW +ISA+ G + F
Sbjct: 257 MYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVT 316
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
FV +LS CSH+G V +G +F +M K ++ CMVDLLG +G L EAK+ I+ M
Sbjct: 317 FVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESM 376
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P KPT +WGALLGAC + N K+ L +++
Sbjct: 377 PMKPTPSVWGALLGACRKYGNLKMGREAAERLFEME 412
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 54/242 (22%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALH---LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
FT++++++ + M LH LH L+ K F ++ + + +DM+ KC + A
Sbjct: 11 FTFSSILSASAATM------MVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSA 64
Query: 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
+ +F +MPER+LVSWN+MI + + F ++
Sbjct: 65 ----------------------VRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDV 102
Query: 167 WNHGFGLSSML-YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
+ + + ++ SA A++ L +G +H VV +V + L+DMY KC
Sbjct: 103 LREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKC-- 160
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+ EG F+ + R++++W VL+ F Q E+ +
Sbjct: 161 --------------RFFDEGVKL------FQCVGDRDVVTWNVLVMGFVQNDKFEEACNY 200
Query: 286 FF 287
F+
Sbjct: 201 FW 202
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 36/151 (23%)
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
+++ SA A+ + G LHS + ++FVG+ L+DMY KC + S++++
Sbjct: 13 FSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCA--DMHSAVRV--- 67
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV-------- 289
F+ M RN++SW +I F + ++ F V
Sbjct: 68 -----------------FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIP 110
Query: 290 ------SLLSGCSHSGPVTKGKHYFTAMAKF 314
S+LS C++ G + G+ + KF
Sbjct: 111 NEVSVSSVLSACANMGGLNFGRQVHGVVVKF 141
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 162/359 (45%), Gaps = 53/359 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT++++++ C G +K +H V + S+ + S I + G V+ A
Sbjct: 42 FTHSSLLSA---CARGGLVKEGEQVHATVLVKGYCSNVFVDTSLITFYAGRGGVERARHV 98
Query: 110 FLRMLNPSLFCWK---FGIIR------LLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M S+ W G +R +F MP R++VSW TM++ R+G + L
Sbjct: 99 FDGMPQRSVVSWNSMLAGYVRCADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQAL 158
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F E+ L + A SA A + DL+ G +H V FV
Sbjct: 159 LLFGEMRRACVELDQVALVAALSACAELGDLKLGRWIHWYVQQR------FVAR------ 206
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
N + S+++ AL+ MYA G +A F M R++ +SW +I AF++ G+ +
Sbjct: 207 -----NWQQPSVRLNNALIHMYASCGILHEAYQVFVKMPRKSTVSWTSMIMAFAKQGLGK 261
Query: 281 KPRFFF------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---- 318
+ F F+ +L CSH+G V +G F +M K T+
Sbjct: 262 EALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAGFVDEGHQIFASM-KHTWGISPSI 320
Query: 319 -YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CMVDLL +GLL EA+ LI+ MP P IWGALLG C H N++LA V L+
Sbjct: 321 EHYGCMVDLLSRAGLLDEARGLIETMPLNPNDAIWGALLGGCRIHRNSELASQVENKLV 379
>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
Length = 433
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 128/267 (47%), Gaps = 41/267 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPERD++SWNTM+ +G E L F + G T SA A +
Sbjct: 17 LFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLSASAQLCL 76
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +HS + + + + +G+ L+DMY KCGC ++
Sbjct: 77 LEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGC----------------------IEQ 114
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
+ L FE M RR++ +W V+I + G+ + F FV +L+ CS
Sbjct: 115 SRLLFENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSR 174
Query: 298 SGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+G V +G+HYF M +Y ++ CMVDLLG +GL+ EA K+I+ M P V+W
Sbjct: 175 AGLVKEGRHYFQMMTD-SYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLW 233
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
+L AC H +L E + L++LD
Sbjct: 234 AMVLCACRIHGLAELGEKIGNRLIELD 260
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H ++ SI + +DM+ KCG ++ + ++F+
Sbjct: 83 IHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSR----------------------LLFE 120
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
MP RD+ +WN MI L HG G + L F N G ++ + +A
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNA 171
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 124/423 (29%), Positives = 184/423 (43%), Gaps = 96/423 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLIDDDYR---------VFCDIGPRYL 49
+KACG+L RKIH ++F+ LI R +F D+ R +
Sbjct: 125 LKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDM 181
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVK----KFYFVSDESIAKSSIDMHVKCGAVDY 105
++N MI+G ++ GN AL + ++ K FV+ SI +DM+ K G +D
Sbjct: 182 GSWNAMISGLIQN---GNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDS 238
Query: 106 AESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL----- 160
A +F+ +P +D++SWNT+I+ ++G E +
Sbjct: 239 AHK----------------------VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKM 276
Query: 161 ---CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
C I + N G + + A A V L+ G +H RV+ LDVFV + LI
Sbjct: 277 MEECKEI-IPNQG------TWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLI 329
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
D+Y KCG ++ A+ Y + + + ++W +IS G
Sbjct: 330 DVYGKCG--------RLVDAMSLFYQ--------------VPQESSVTWNAIISCHGIHG 367
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFV 321
EK F FVSLLS CSHSG V +GK F M ++ ++
Sbjct: 368 HAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYG 427
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
CMVDLLG +G L A I +MP +P IWGALLGAC H N +L + L ++D K
Sbjct: 428 CMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSK 487
Query: 382 VFG 384
G
Sbjct: 488 NVG 490
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 117/296 (39%), Gaps = 80/296 (27%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML------YATAFSAR 185
F ++P++D+ +WN+MIS +G E + F +L L S + + A
Sbjct: 74 FDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL-----LVSEIRPDFYTFPPVLKAC 128
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS-------------- 231
++ D G +H + +VFV + LI MY + G GI S
Sbjct: 129 GTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWN 185
Query: 232 ------IQIGKA----------------------------LVTMYAEGGSTQKADLAFEL 257
IQ G A V MYA+ G A FE+
Sbjct: 186 AMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEI 245
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTK 303
+ +++ISW LI+ ++Q G+ + + +VS+L +H G + +
Sbjct: 246 IPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 305
Query: 304 G-KHYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G K + + + FV C++D+ G G L +A L ++P + + V W A++
Sbjct: 306 GMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAII 360
>gi|224111954|ref|XP_002332852.1| predicted protein [Populus trichocarpa]
gi|222837177|gb|EEE75556.1| predicted protein [Populus trichocarpa]
Length = 331
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 129/262 (49%), Gaps = 38/262 (14%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MPER++VSW TMIS ++G + L F ++ G L ++ A +A A + DL+ G
Sbjct: 1 MPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVELDQVVLLAALTACAELGDLKMG 60
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+HS + D FVGS + + + AL+ MYA G +A
Sbjct: 61 MWIHSYI------QDTFVGSNQRVL------------VSLNNALIHMYASCGMIDEAYEV 102
Query: 255 FELMSRRNMISWMVLISAFSQAG----VLEKPRFF------------FFFVSLLSGCSHS 298
F M R+ +SW LI+AF++ G VLE R F+ +L CSH+
Sbjct: 103 FRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCACSHA 162
Query: 299 GPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G V +G+ F M + ++ CMVDLL +G L EA++LI MP KP +WGA
Sbjct: 163 GLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAVWGA 222
Query: 355 LLGACCSHYNTKLAELVMRNLL 376
LLG C + N +LA LV + L+
Sbjct: 223 LLGGCRFYRNAELASLVSQKLV 244
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 26/106 (24%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDE----SIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
C +G++KM + +H ++ + S++ S+ + I M+ CG +D A
Sbjct: 51 CAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEAYE--------- 101
Query: 118 LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
+F+ MPER VSW ++I+ + G+ L F
Sbjct: 102 -------------VFRWMPERSAVSWTSLITAFAKQGYAQAVLEIF 134
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 172/368 (46%), Gaps = 56/368 (15%)
Query: 39 RVFCDIGP-RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
R+F D P + ++NTMI+G + G + A L ++ VS ++ I +
Sbjct: 88 RLFFDQMPVKDTASWNTMISGFSQN---GMMDQARELFLVMPVRNSVSWNAM----ISGY 140
Query: 98 VKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMIS 148
V+ G +D A+ F S+ W KFG I L F++MP ++LV+WN MI+
Sbjct: 141 VESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIA 200
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+ L F + GF + ++ +++ L+ G +H + S
Sbjct: 201 GYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSW 260
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
++ G+ L+ MY KCG +E + ++ F +M ++++++W
Sbjct: 261 NITAGTSLLSMYCKCG--DLEDAWKL--------------------FLVMPQKDVVTWNA 298
Query: 269 LISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK-- 313
+IS ++Q G EK + F FV++LS C+H+G V G YF +M +
Sbjct: 299 MISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDY 358
Query: 314 --FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
++ C+VDLLG G L EA LI +MP KP I+G LLGAC H N +LAE
Sbjct: 359 GVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFA 418
Query: 372 MRNLLQLD 379
+NLL LD
Sbjct: 419 AKNLLNLD 426
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 105/289 (36%), Gaps = 56/289 (19%)
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISI 149
+ G + A F R+ P +F + + + F +MP +D SWNTMIS
Sbjct: 49 RRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISG 108
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+++G + F+ R SV W +
Sbjct: 109 FSQNGMMDQARELFL----------------VMPVRNSV---SWNAMISG---------- 139
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
+V SG +D+ + S+ A++T + + G + A+ FE M +N+++W +
Sbjct: 140 -YVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAM 198
Query: 270 ISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY 316
I+ + + E F S+L GCS+ + GK + K
Sbjct: 199 IAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPV 258
Query: 317 TCYFVCMVDLLGLS---GLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ LL + G L +A KL MP K V W A++ H
Sbjct: 259 SWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQK-DVVTWNAMISGYAQH 306
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/419 (26%), Positives = 182/419 (43%), Gaps = 67/419 (15%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+K+C + +L ++H +I + ++ F+ LID YRVF ++ R +
Sbjct: 58 LKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNV 117
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+ MING + C ++ A L L + D + + I +++ V A
Sbjct: 118 IAWTAMINGYITCC---DLVTARRLFDLAPE----RDIVLWNTMISGYIEAKDVIRAREL 170
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F +M N + W ++ +F++MPER++ SWN +I TR+G E L
Sbjct: 171 FDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVL 230
Query: 161 CTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
F + G + + SA A + L+ G +H +V+V + L+DM
Sbjct: 231 SAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDM 290
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA------- 272
Y KCG +E+++ + F+ M +++ISW +I
Sbjct: 291 YAKCGV--VETALDV--------------------FKSMDNKDLISWNTIIGGLAVHGHG 328
Query: 273 ------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVC 322
FS + + F+ +L C+H G V G YF +M ++ C
Sbjct: 329 ADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGC 388
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+VDLLG +GLL A I +MP + VIW ALLGAC + N +LAEL + L++ + K
Sbjct: 389 IVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPK 447
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 150/332 (45%), Gaps = 47/332 (14%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGI 125
LH V F + ++++ CG ++ A F ML+ + W K G
Sbjct: 130 LHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGD 189
Query: 126 IRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+ + L +F++M +R +VSWN MIS L + E F E+ GF T
Sbjct: 190 LEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPV 249
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A + D++ G +HS G GL+ I +G +LV Y +
Sbjct: 250 CARLGDVDAGEWIHSYAD----------GKGLL-----------RKVISVGNSLVDFYCK 288
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
G+ + A F M+++N++SW +IS G E F FV +
Sbjct: 289 CGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGV 348
Query: 292 LSGCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
L+ C+H+G V KG+ F +M KF + ++ C+VDLLG G + EA LI MP P
Sbjct: 349 LACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMP 408
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WGALL AC +H + ++AE+ + L++L+
Sbjct: 409 NAALWGALLSACRTHGDREVAEIAAKELVRLE 440
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 116/447 (25%), Positives = 193/447 (43%), Gaps = 88/447 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISS-------IFLQL----IDDDYRVFCDIGPRYL 49
++ C LKS+ R+IH+ + S + +F+ + + + R+F + +
Sbjct: 108 LQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKV 167
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAK--------------SSID 95
F +N ++NG + +GN + +L L +++ ES K S I
Sbjct: 168 FLWNLLMNGYAK---IGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMIS 224
Query: 96 MHVKCG----AVDYAESAFLRMLNPSLFCW----------------KFGIIRLLI-MFQK 134
+V G +D E L +N L K G + I +F+
Sbjct: 225 GYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFET 284
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
M ER +VSW +MI+ R G ++ F E+ +S+ A A AS+ LE G
Sbjct: 285 MGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERG 344
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H ++ SLD V + L+DMYLKCG G+ A L
Sbjct: 345 QEIHGHILRNGFSLDRHVANALVDMYLKCGALGL----------------------ARLL 382
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
F+++ ++++SW V+I+ + G + F F+S+L CSHSG +
Sbjct: 383 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 442
Query: 302 TKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+G +F M + ++ C+VDLL +G L +A K I MP +P IWGALL
Sbjct: 443 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 502
Query: 358 ACCSHYNTKLAELVMRNLLQLDVKVFG 384
C +++ KLAE V ++ +L+ + G
Sbjct: 503 GCRIYHDVKLAEKVAEHVFELEPENTG 529
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 117/436 (26%), Positives = 188/436 (43%), Gaps = 103/436 (23%)
Query: 3 ACGSLKSLPIARKIHAQLI------STCLISSIFLQL-----IDDDYRVFCDIGPRYLFT 51
AC L++L + H LI S+CL++S+ I + RVF + L
Sbjct: 263 ACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVM 322
Query: 52 YNTMI-----NGGVR---------------------------CLCVGNIKMALHLHGLVK 79
+ MI NG V C VGN+++ +HGL
Sbjct: 323 WTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSI 382
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
K + D ++A + + M+ KC A+ +F+ E+D
Sbjct: 383 KV-GIWDTNVANALVHMYAKCYQNRDAK----------------------YVFEMESEKD 419
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+V+WN++IS +++G E L F + + + A+ FSA AS+ L G LH+
Sbjct: 420 IVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHA 479
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
V + F+ S SS+ +G AL+ YA+ G + A L F+ +
Sbjct: 480 YSVKLG-----FLAS---------------SSVHVGTALLDFYAKCGDAESARLIFDTIE 519
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
+N I+W +I + + G + F F S+LS CSH+G V +GK
Sbjct: 520 EKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKK 579
Query: 307 YFTAMAK---FT-YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
YF++M K FT T ++ CMVD+L +G L +A +I++MP +P +GA L C H
Sbjct: 580 YFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMH 639
Query: 363 YNTKLAELVMRNLLQL 378
L E+V++ +L L
Sbjct: 640 SRFDLGEIVIKKMLDL 655
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 129/306 (42%), Gaps = 62/306 (20%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
NI HG++ + D SIA + ++ G+ Y + A L
Sbjct: 68 NIDSLRQAHGVLTGNGLMGDISIATKLVSLY---GSFGYTKDARL--------------- 109
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F ++PE D W ++ + FE + + L HGFG ++++ A A
Sbjct: 110 ----VFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACT 165
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
V DL+ G +H ++V + PS D V +GL+DMY KCG I+SS ++
Sbjct: 166 EVQDLDNGKKIHCQIVKV-PSFDNVVLTGLLDMYAKCG--EIKSSYKV------------ 210
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
FE ++ RN++ W +I+ + + + E+ F + +L+
Sbjct: 211 --------FEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVM 262
Query: 294 GCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+ + +GK + + K +C ++D+ G + A+++ +E S V
Sbjct: 263 ACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNE-HSHVDLV 321
Query: 351 IWGALL 356
+W A++
Sbjct: 322 MWTAMI 327
>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g56570
gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 611
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 153/340 (45%), Gaps = 64/340 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+ ++ +H V K F S+ + S +D++ +CG + A+
Sbjct: 226 IDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKH---------------- 269
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
F +M ++DL++WNT+IS L R E L F + GF + + + +A
Sbjct: 270 ------YFHEMEDKDLITWNTLISELERSDSS-EALLMFQRFESQGFVPNCYTFTSLVAA 322
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ L G LH R+ G ++++ AL+ MYA+
Sbjct: 323 CANIAALNCGQQLHGRIFR----------------------RGFNKNVELANALIDMYAK 360
Query: 245 GGSTQKADLAF-ELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
G+ + F E++ RRN++SW ++ + G + F F++
Sbjct: 361 CGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMA 420
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LS C H+G V KG YF M + C+VDLLG +G +GEA +L++ MP K
Sbjct: 421 VLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFK 480
Query: 347 PTCVIWGALLGACCSH-YNTKLAELVMRNLLQLDVKVFGS 385
P WGA+LGAC +H +N ++ L R +++L K+ G+
Sbjct: 481 PDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGT 520
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 40/243 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP+RD+V+W MI+ + F E+ G + ++ + ++
Sbjct: 67 LFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKV 126
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +G +H VV + G+E S+ + A++ MYA T +
Sbjct: 127 LAYGALVHGVVVKL----------------------GMEGSLYVDNAMMNMYATCSVTME 164
Query: 251 AD-LAFELMSRRNMISWMVLISAFSQAG------------VLEKPRFFFFFVSLLSGCSH 297
A L F + +N ++W LI+ F+ G +LE + +++ S
Sbjct: 165 AACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASA 224
Query: 298 S-GPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWG 353
S VT GK ++ K + M +L L G L EAK EM K + W
Sbjct: 225 SIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDK-DLITWN 283
Query: 354 ALL 356
L+
Sbjct: 284 TLI 286
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/257 (18%), Positives = 104/257 (40%), Gaps = 38/257 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F+ + ++ V+W T+I+ T G G L + ++ ++ A A AS+
Sbjct: 168 LIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASID 227
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ G +H+ V+ ++ V + ++D+Y +C G
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRC----------------------GYLS 265
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF------------FFFVSLLSGCSH 297
+A F M +++I+W LIS ++ E F + F SL++ C++
Sbjct: 266 EAKHYFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACAN 325
Query: 298 SGPVTKGKHYFTAMAK--FTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ G+ + + F ++D+ G + +++++ E+ + V W +
Sbjct: 326 IAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTS 385
Query: 355 LLGACCSH-YNTKLAEL 370
++ SH Y + EL
Sbjct: 386 MMIGYGSHGYGAEAVEL 402
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 63/226 (27%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSI-FLQLIDDDY----------RVFCDIGPRYL 49
++A S+ S+ ++IHA +I S++ + I D Y F ++ + L
Sbjct: 220 VRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDL 279
Query: 50 FTYNTMINGGVR-------------------------------CLCVGNIKMALHLHGLV 78
T+NT+I+ R C + + LHG +
Sbjct: 280 ITWNTLISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRI 339
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ F + +A + IDM+ KCG + ++ F +++ R
Sbjct: 340 FRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVD---------------------RR 378
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+LVSW +M+ HG+G E + F ++ + G +++ SA
Sbjct: 379 NLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSA 424
>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g56690, mitochondrial; Flags: Precursor
gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 170/373 (45%), Gaps = 61/373 (16%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D+ +F ++ R + T+ TMI G + V + +K + V E S
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNRVD----------VARKLFEVMPEKTEVSW 237
Query: 94 IDM---HVKCGAVDYAESAFLRM-LNPSLFCWK----FG----IIRLLIMFQKMPERDLV 141
M + G ++ AE F M + P + C FG I + +F M +RD
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNA 297
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
+W MI R GF E L F ++ G S + S A++ L++G +H+ +
Sbjct: 298 TWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
V + DV+V S L+ MY+KCG LV KA L F+ S +
Sbjct: 358 VRCQFDDDVYVASVLMTMYVKCG------------ELV----------KAKLVFDRFSSK 395
Query: 262 NMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYF 308
++I W +IS ++ G+ E+ F +++L+ CS++G + +G F
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIF 455
Query: 309 TAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
+M +KF T ++ C VD+LG +G + +A +LI+ M KP +WGALLGAC +H
Sbjct: 456 ESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSR 515
Query: 365 TKLAELVMRNLLQ 377
LAE+ + L +
Sbjct: 516 LDLAEVAAKKLFE 528
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 17/156 (10%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------F 287
++V+ Y G ++A F+ MS RN++SW L+S + + ++ + R F
Sbjct: 53 SIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVS 112
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMA---KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ +++ G G V + + F M + ++T F ++D G + +A+KL D MP
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLID----DGRIDKARKLYDMMP 168
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
K V ++G C A L+ + + +V
Sbjct: 169 VK-DVVASTNMIGGLCREGRVDEARLIFDEMRERNV 203
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 39/268 (14%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F+ + RB+V W+ +I+ R+G E++ F ++ +S+ +A+ A +S+
Sbjct: 206 LXLFEXIXYRBVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSL 265
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L+ G +H ++ LDV + IDMY KCGC +VT Y
Sbjct: 266 GSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGC------------IVTAYR----- 308
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGC 295
F + +N+ SW +I+ F G+ + F+ FVS+LS C
Sbjct: 309 -----VFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSAC 363
Query: 296 SHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SHSG + +G +F +M++ ++ CMVDLLG +G + EA I+ MP++P
Sbjct: 364 SHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASA 423
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLD 379
WGALLGAC H +LAE V + LL L+
Sbjct: 424 WGALLGACRIHRRAELAEEVAKKLLPLE 451
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSI--FLQLID---------DDYRVFCDIGPRYLFT 51
AC SL SL R +H +I + + + ID YRVFC I + +F+
Sbjct: 261 ACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFS 320
Query: 52 YNTMING-GVRCLC 64
++TMING G+ LC
Sbjct: 321 WSTMINGFGMHGLC 334
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++K +HG + + D S IDM+ KCG
Sbjct: 262 CSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGC------------------- 302
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
I+ +F ++PE+++ SW+TMI+ HG E L F E+ + +S+ + +
Sbjct: 303 ---IVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSV 359
Query: 182 FSA 184
SA
Sbjct: 360 LSA 362
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 151/338 (44%), Gaps = 68/338 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C ++ +H V K S+ + + I+M+ KCG+V+ A
Sbjct: 682 CACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR-------------- 727
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++F K+P +D+VSWNTMI +++ E L F+++ F + A
Sbjct: 728 --------LVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACV 778
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A + L+ G +H ++ D+ V L+DMY KCG L+ +
Sbjct: 779 LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCG-------------LLVL 825
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
A L F+++ ++++ISW V+I+ + G + F F
Sbjct: 826 ---------AQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSF 876
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-------YFVCMVDLLGLSGLLGEAKKLID 341
+L+ CSHSG + +G +F +M C ++ C+VDLL G L +A K I+
Sbjct: 877 SVILNACSHSGLLNEGWKFFNSMRN---ECGVEPKLEHYACVVDLLARMGNLSKAYKFIE 933
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP KP IWG LL C H++ KLAE V ++ +L+
Sbjct: 934 SMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELE 971
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 123/302 (40%), Gaps = 69/302 (22%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+GN+ + LHG K F + + + +DM+ KCG ++ A F+
Sbjct: 584 IGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFV------------- 630
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSSMLYA 179
KM + +VSW + I+ R G + + F E+ + G + ++S+++A
Sbjct: 631 ---------KMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHA 681
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
A S+ L+ G +HS V+ ++ V + LI+MY KC
Sbjct: 682 CACSS-----SLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKC---------------- 720
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
GS ++A L F + ++++SW +I +SQ + + F
Sbjct: 721 ------GSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDIT 774
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVC-MVDLLGLSGLLGEAKKLIDEMP 344
+L C+ + KG+ + + Y + C +VD+ GLL A+ L D +P
Sbjct: 775 MACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP 834
Query: 345 SK 346
K
Sbjct: 835 KK 836
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 123/311 (39%), Gaps = 63/311 (20%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G +K +HG V K F S+ ++ S I + K G V+ A +
Sbjct: 483 LGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHN---------------- 526
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F ++ E D+VSWN+MI+ +GF L FI++ G + + A
Sbjct: 527 ------LFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 580
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ +L G LH V S +V + L+DMY KCG
Sbjct: 581 WANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCG------------------NL 622
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVS 290
G+T+ F M ++SW I+A+ + G+ +P + S
Sbjct: 623 NGATE----VFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPD-IYTVTS 677
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKP 347
++ C+ S + KG+ + + K ++++ G + EA+ + ++P K
Sbjct: 678 IVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKD 737
Query: 348 TCVIWGALLGA 358
V W ++G
Sbjct: 738 I-VSWNTMIGG 747
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 159/346 (45%), Gaps = 52/346 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR--------- 112
C + ++++ +H V K + S+ S++ + M+ CG ++ A F R
Sbjct: 146 CSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASW 205
Query: 113 --MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
M+ L C F R MF+ MP+RD+VSW+ MI+ + E L F ++
Sbjct: 206 NIMIGGYLKCGVFKSARR--MFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEK 263
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ + A SA A + +E G I+ Y++ +
Sbjct: 264 IEPNESVLVNALSACAHLGAMEQG--------------------QWIERYMER--KNVRL 301
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA-------------FSQAG 277
++++G AL+ MY++ GS ++A F M +N+++W +I+ FSQ
Sbjct: 302 TVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQME 361
Query: 278 VLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLL 333
+ F+ +L+ CSHS V +G +F +M + CMVDL G +G+L
Sbjct: 362 MQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGML 421
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+A+ +I MP KP IWGALL AC H +T+L E V + LL+LD
Sbjct: 422 DQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELD 467
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 120/306 (39%), Gaps = 60/306 (19%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
FV+ ++ +++ H G++ YA F R+ P +F +IR F P +V
Sbjct: 68 FVASRILSFAALSPH---GSIPYARFLFYRIRKPDIFIAN-TLIRAY-AFSPNPIDAVVF 122
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
++ M E+ F ++ H F L A + + L G +HS V
Sbjct: 123 YSEMT----------ESSVVFPDV--HTFPL-------LLKACSEIPSLRLGEAIHSHVF 163
Query: 203 HMEPSLDVFVGSGLIDMYLKCG--------------CNGIESSIQIGKALVTMYAEGGST 248
+ S +V V + L+ MY CG C+G +I IG Y + G
Sbjct: 164 KLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGG-----YLKCGVF 218
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
+ A FE M R+++SW V+I+ + Q ++ F V+ LS C
Sbjct: 219 KSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSAC 278
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+H G + +G+ M + ++D+ G + A ++ +M K + W
Sbjct: 279 AHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEK-NVLAW 337
Query: 353 GALLGA 358
A++
Sbjct: 338 SAMING 343
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 159/349 (45%), Gaps = 56/349 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + LH K F D A + +DM+ K G ++ A F +M + W
Sbjct: 93 CTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTW 152
Query: 122 --------KFGIIRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GF 171
+FG + + L +F+ MP R++VSW TMIS +R E L F+ + G
Sbjct: 153 NAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGM 212
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+++ A+ F A A++ LE G + + +++V + +++MY KCG
Sbjct: 213 MPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCG------- 265
Query: 232 IQIGKALVTMYAEGGSTQKADLAF----ELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
K D+A+ E+ S RN+ SW +I + G K +
Sbjct: 266 ------------------KIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYD 307
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLS 330
FV LL C+H G V KG+H F +M ++ CMVDLLG +
Sbjct: 308 QMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRA 367
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
G L EA ++I MP KP VIWGALLGAC H N +LAE+ +L L+
Sbjct: 368 GQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFALE 416
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 10/151 (6%)
Query: 136 PERDLVSWNTMISILTRH-GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
P+ L +N +I + H + + ++ H F + + FSA S+ G
Sbjct: 43 PKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLG 102
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS---------IQIGKALVTMYAEG 245
LH+ + D+F + L+DMY K G + + A++ +A
Sbjct: 103 QMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARF 162
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQA 276
G A F LM RN++SW +IS +S++
Sbjct: 163 GDMDVALELFRLMPSRNVVSWTTMISGYSRS 193
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 107/440 (24%), Positives = 181/440 (41%), Gaps = 111/440 (25%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSI-FLQLIDDDY----------RVFCDIGPRYLFT 51
AC ++ +L + R +H + C + F + D Y VF +G + +
Sbjct: 305 ACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVS 364
Query: 52 YNTMINGGVR--------------------------------CLCVGNIKMALHLHGLVK 79
+ ++I VR C C ++ +H V
Sbjct: 365 WTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 424
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
K S+ + + I+M+ KCG+V+ A ++F K+P +D
Sbjct: 425 KNGMGSNLPVTNALINMYAKCGSVEEAR----------------------LVFSKIPVKD 462
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSWNTMI +++ E L F+++ F + A A A + L+ G +H
Sbjct: 463 IVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHG 521
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
++ D+ V L+DMY KCG L+ + A L F+++
Sbjct: 522 HILRRGYFSDLHVACALVDMYAKCG-------------LLVL---------AQLLFDMIP 559
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKH 306
++++ISW V+I+ + G + F F ++L+ CSHSG + +G
Sbjct: 560 KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWK 619
Query: 307 YFTAMAKFTYTC-------YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
+F +M C ++ C+VDLL G L +A K I+ MP KP IWG LL C
Sbjct: 620 FFNSMRN---ECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGC 676
Query: 360 CSHYNTKLAELVMRNLLQLD 379
H++ KLAE V ++ +L+
Sbjct: 677 RIHHDVKLAEKVAEHIFELE 696
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 130/313 (41%), Gaps = 69/313 (22%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T+++ V C +GN+ + LHG K F + + + +DM+ KCG ++ A F+
Sbjct: 298 TLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFV-- 355
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG--- 170
KM + +VSW ++I+ R G + + F E+ + G
Sbjct: 356 --------------------KMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRP 395
Query: 171 --FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
+ ++S+++A A S+ L+ G +HS V+ ++ V + LI+MY KC
Sbjct: 396 DIYTVTSIVHACACSS-----SLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKC----- 445
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF- 287
GS ++A L F + ++++SW +I +SQ + + F
Sbjct: 446 -----------------GSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLD 488
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVC-MVDLLGLSGLL 333
+L C+ + KG+ + + Y + C +VD+ GLL
Sbjct: 489 MQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLL 548
Query: 334 GEAKKLIDEMPSK 346
A+ L D +P K
Sbjct: 549 VLAQLLFDMIPKK 561
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 122/311 (39%), Gaps = 63/311 (20%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G +K +HG V K F S+ ++ S I + K G V+ A +
Sbjct: 208 LGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHN---------------- 251
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F ++ E D+VSWN+MI+ +GF L FI++ G + + A
Sbjct: 252 ------LFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 305
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ +L G LH V S +V + L+DMY KC
Sbjct: 306 CANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKC--------------------- 344
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVS 290
G+ A F M ++SW +I+A+ + G+ +P + S
Sbjct: 345 -GNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPD-IYTVTS 402
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKP 347
++ C+ S + KG+ + + K ++++ G + EA+ + ++P K
Sbjct: 403 IVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKD 462
Query: 348 TCVIWGALLGA 358
V W ++G
Sbjct: 463 I-VSWNTMIGG 472
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 150/324 (46%), Gaps = 63/324 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LHG K S+ ++ S I M++KCG+V+ +F
Sbjct: 175 LHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRR----------------------LFD 212
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+MP + L++WN +IS +++G ++ L F ++ + G + S+ A
Sbjct: 213 EMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCA------- 265
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
HL ++ + E VG L++ NG ++ + AL++MYA G+ KA
Sbjct: 266 --HLGAKKIGQE------VGE-LVE------ANGFAPNVFLSNALISMYARCGNLAKARA 310
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F++M ++++SW +I + G+ E F FV +LS CSHSG
Sbjct: 311 VFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGL 370
Query: 301 VTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
KG F AM K Y ++ C+VDLLG +G L EA + ID MP +P +WGAL
Sbjct: 371 TDKGLELFRAM-KREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGAL 429
Query: 356 LGACCSHYNTKLAELVMRNLLQLD 379
LGAC H N +AEL +++ +
Sbjct: 430 LGACKIHKNVDMAELAFAKVIEFE 453
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 159/351 (45%), Gaps = 61/351 (17%)
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
+TM+ C +I++ +H + F S+ I + ID+++KCG V+ A
Sbjct: 236 STMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASG---- 291
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+F+ + +D++SWNT+I T E L F E+ G
Sbjct: 292 ------------------LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + + A A + ++ G R +H+ ID LK G+ +
Sbjct: 334 PNEVTMLSILPACAHLGAIDIG-----RWIHV-----------YIDKRLK----GVSNPS 373
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----- 287
+ +L+ MYA+ G + A F+ M R++ SW +I F+ G P F F
Sbjct: 374 SLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG-RANPAFDIFSRMRK 432
Query: 288 ---------FVSLLSGCSHSGPVTKGKHYFTAMA---KFTYTC-YFVCMVDLLGLSGLLG 334
FV LLS CSHSG + G+H F +M K T ++ CM+DLLG SGL
Sbjct: 433 DGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFK 492
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
EA+++I+ M P VIW +LL AC H N +L E +NL++++ K GS
Sbjct: 493 EAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGS 543
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 122/311 (39%), Gaps = 50/311 (16%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KF 123
+HG V K D + S I M+VK G + A F + + + +
Sbjct: 124 QIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNG 183
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
I MF ++P +D+VSWN +IS G E L F E+ T S
Sbjct: 184 YIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLS 243
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A +E G +HS ID + G S+++I AL+ +Y
Sbjct: 244 ACAQSASIELGRQVHS----------------WIDDH------GFGSNLKIVNALIDLYI 281
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
+ G + A FE +S +++ISW LI ++ + ++ F +S
Sbjct: 282 KCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLS 341
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKF-----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+L C+H G + G+ + K + ++D+ G + A+++ D M +
Sbjct: 342 ILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLN 401
Query: 346 KPTCVIWGALL 356
+ + W A++
Sbjct: 402 R-SLSSWNAMI 411
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 110/279 (39%), Gaps = 26/279 (9%)
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
G+ + +F + E +L+ WNTM L ++ + + G +S +
Sbjct: 52 GLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLK 111
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQI 234
A A G +H V+ + LD++V + LI MY+K G +
Sbjct: 112 ACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVS 171
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------- 286
AL+ YA G A F+ + ++++SW LIS +++ G ++ F
Sbjct: 172 YTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNV 231
Query: 287 -----FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKK 338
V++LS C+ S + G+ H + F V ++DL G + A
Sbjct: 232 KPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASG 291
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
L + + K + W L+G K A L+ + +L+
Sbjct: 292 LFEGLSYK-DVISWNTLIGGYTHMNLYKEALLLFQEMLR 329
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 152/336 (45%), Gaps = 51/336 (15%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFG 124
+HG + K D+ + + +D +VK G V YA F M+ ++ C +
Sbjct: 169 VHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMMMEKNVICSTSMISGYMNRGS 228
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFE-TLCTFIELWNHGFGLSSMLYATAFS 183
+ +F++ E+D+V +N MI ++ E L ++E+ +GF + +A+
Sbjct: 229 VEDAEEIFERTVEKDVVVFNAMIEGYSKSVQTAEKALEVYVEMQRYGFRPNLSTFASVIG 288
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A + + E G + +++ E +V GS LIDMY KC
Sbjct: 289 ACSVLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSKC-------------------- 328
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVS 290
G + A AFE M +N+ SW +I + + G ++ F F+
Sbjct: 329 --GRIEDARRAFEQMPEKNVFSWSSMIDGYGKNGRPDEALQLFHKMQDCCIEPNYVTFLG 386
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
LS C H+G V+KG+ F +M + Y+ ++ CMVDLLG +G L A + + MP
Sbjct: 387 ALSACGHAGLVSKGREIFESMER-EYSLKPGMEHYACMVDLLGRAGSLNLAWEFVMGMPE 445
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
KP+ +W ALL AC H N ++A + L +L+ +
Sbjct: 446 KPSSDVWAALLSACNLHGNVEMASVAANELFKLNAE 481
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/303 (18%), Positives = 123/303 (40%), Gaps = 52/303 (17%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H + K F+ + +++ + +++KCG + YA MF
Sbjct: 64 IHAHIVKTGFIPNTNVSIKLLILYLKCGCLKYARQ----------------------MFD 101
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL-- 191
++P+R L ++N +I + G +++ L G Y+ A S ++
Sbjct: 102 ELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGDNVTL 161
Query: 192 --EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALVT 240
G +H +++ E D + + L+D Y+K G G +E ++ ++++
Sbjct: 162 SCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMMMEKNVICSTSMIS 221
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA---------GVLEKPRFFF----- 286
Y GS + A+ FE ++++ + +I +S++ +E R+ F
Sbjct: 222 GYMNRGSVEDAEEIFERTVEKDVVVFNAMIEGYSKSVQTAEKALEVYVEMQRYGFRPNLS 281
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
F S++ CS G+ + K FT ++D+ G + +A++ ++M
Sbjct: 282 TFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQM 341
Query: 344 PSK 346
P K
Sbjct: 342 PEK 344
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 149/331 (45%), Gaps = 42/331 (12%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG 124
LH ++ K F + + + + + CG + A+ F W + G
Sbjct: 298 QLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNG 357
Query: 125 IIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+IR +F MPERD VSW+TMIS + G L F + N + + A+A S
Sbjct: 358 LIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALS 417
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-----------CNGIESSI 232
A A L+ G +H +++ L + SGLIDMY KCG N SS+
Sbjct: 418 AIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVNDKFSSV 477
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
A++ A G A ++ +L S+ S KP F+ +L
Sbjct: 478 SPWNAMICSLAIHG---YAHMSLDLFSQLQRTSI--------------KPN-SITFIGVL 519
Query: 293 SGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
S C H+G VTKGK+YF +M + ++ CMVDLLG +G L EA++L+ MP KP
Sbjct: 520 SACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMKPD 579
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
VIWG++L A + N L E L +LD
Sbjct: 580 VVIWGSILSASRAQGNVALGERAAEELAKLD 610
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 101/259 (38%), Gaps = 27/259 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F ++PERD VSW T+I + + ++++ G +L A A
Sbjct: 232 VFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYS 291
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALVT 240
+ G LH+ ++ FV + L+ Y CG G+ +S AL+
Sbjct: 292 AVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLA 351
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
G ++A F+ M R+ +SW +IS + Q G + F+
Sbjct: 352 ALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVT 411
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMP 344
S LS + SG + +GK H + T ++D+ G + +A + + +
Sbjct: 412 LASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVN 471
Query: 345 SKPTCV-IWGALLGACCSH 362
K + V W A++ + H
Sbjct: 472 DKFSSVSPWNAMICSLAIH 490
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/342 (30%), Positives = 151/342 (44%), Gaps = 42/342 (12%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + LH ++ K F + + + + + CG + A+ F W
Sbjct: 287 CARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASW 346
Query: 122 --------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+ G+IR +F MPERD VSW+TMIS + G L F + N
Sbjct: 347 NALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIE 406
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-------- 224
+ + A+A SA A L+ G +H +++ L + SGLIDMY KCG
Sbjct: 407 PNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAVQF 466
Query: 225 ---CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
N SS+ A++ A G A ++ +L S+ S K
Sbjct: 467 FNRVNDKFSSVSPWNAMICSLAIHG---YAHMSLDLFSQLQRTSI--------------K 509
Query: 282 PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAK 337
P F+ +LS C H+G VTKGK+YF +M + ++ CMVDLLG +G L EA+
Sbjct: 510 PN-SITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAE 568
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+L+ MP KP VIWG++L A + N L E L +LD
Sbjct: 569 QLVSMMPMKPDVVIWGSILSASRAQGNVALGERAAEELAKLD 610
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 101/259 (38%), Gaps = 27/259 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F ++PERD VSW T+I + + ++++ G +L A A
Sbjct: 232 VFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYS 291
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALVT 240
+ G LH+ ++ FV + L+ Y CG G+ +S AL+
Sbjct: 292 AVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLA 351
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
G ++A F+ M R+ +SW +IS + Q G + F+
Sbjct: 352 ALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVT 411
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMP 344
S LS + SG + +GK H + T ++D+ G + +A + + +
Sbjct: 412 LASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVN 471
Query: 345 SKPTCV-IWGALLGACCSH 362
K + V W A++ + H
Sbjct: 472 DKFSSVSPWNAMICSLAIH 490
>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130 [Vitis vinifera]
gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 66/350 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHG-LVKKFYFVSDESIAKSSI-DMHVKCGAVDYAE 107
FT+ + + C +G I+ +H L+ + + +S +I S+I D++ KCG + A+
Sbjct: 207 FTFTSTLKA---CGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQ 263
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
+F ++ +++L+SW+ +I + G E + F +L
Sbjct: 264 K----------------------VFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLR 301
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ + + A + +E G +H ++ + LD+ V + +IDMYLKCG
Sbjct: 302 ESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGL-- 359
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
T++A+ F M RN++SW V+I+ + + G+ EK F
Sbjct: 360 --------------------TEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFN 399
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLS 330
+++LLS CSHSG + + + YF+ + ++ CMVD+LG +
Sbjct: 400 RMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRA 459
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
G L EAK LI+ M KP IW LL AC H N ++ V L ++D
Sbjct: 460 GQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDT 509
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 141/348 (40%), Gaps = 67/348 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT++T + C +G ++ + +HG+ K F + ++IDM+ KCG + AE
Sbjct: 106 FTFSTSLKA---CGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQ- 161
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F KMP R+LVSWN MI+ T G G ++L F +
Sbjct: 162 ---------------------VFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQ 200
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNG 227
G + + A ++ + G +H+ ++ S+ + S ++D+Y KC
Sbjct: 201 GEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKC---- 256
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
G +A F+ + ++N+ISW LI F+Q G L + F
Sbjct: 257 ------------------GYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFR 298
Query: 287 -----------FFVSLLSGC-SHSGPVTKGKH---YFTAMAKFTYTCYFVCMVDLLGLSG 331
F +S++ G + V +GK Y + ++D+ G
Sbjct: 299 QLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCG 358
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EA++L EM + V W ++ H + A + + N +QLD
Sbjct: 359 LTEEAERLFSEMQVR-NVVSWTVMITGYGKHGLGEKA-IHLFNRMQLD 404
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 116/334 (34%), Gaps = 63/334 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G L +H F D + IDM+ KC VD A S F RML
Sbjct: 14 CSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML------- 66
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
ER++VSW ++ + G +L E+ G + ++T+
Sbjct: 67 ---------------ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTS 111
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A ++ +E G +H V VG+ IDMY KCG G+
Sbjct: 112 LKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGM------------- 158
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF-------------FFF 288
A+ F M RN++SW +I+ + G K F F
Sbjct: 159 ---------AEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTF 209
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF-----VCMVDLLGLSGLLGEAKKLIDEM 343
S L C G + G ++ + +VDL G L EA+K+ D +
Sbjct: 210 TSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRI 269
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
K + W AL+ N A + R L +
Sbjct: 270 EQK-NLISWSALIQGFAQEGNLLEAMDLFRQLRE 302
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 140/309 (45%), Gaps = 51/309 (16%)
Query: 99 KCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISI 149
+CG V A+ F RM +L W K G + L +F +MP +D VSW+TMI
Sbjct: 184 RCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVG 243
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+GF +E F EL G + + A SA A +E+G LH +
Sbjct: 244 FAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWM 303
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM-SRRNMISWMV 268
V V + L+D Y KCG G+ A L FE M +R+++SW
Sbjct: 304 VSVNNALLDTYSKCGNVGM----------------------ARLVFERMPEKRSIVSWTS 341
Query: 269 LISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFT 315
+I+ + G E+ F F+S+L CSH+G + KG YF M K
Sbjct: 342 MIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKM-KDI 400
Query: 316 YTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
Y ++ CMVDL G +G L +A + I MP PT +IW LLGAC H N KLAE
Sbjct: 401 YNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAER 460
Query: 371 VMRNLLQLD 379
V L +LD
Sbjct: 461 VKERLSELD 469
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 114/289 (39%), Gaps = 57/289 (19%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F P D+ NT+I L +L TF+E+ L S +A A AS
Sbjct: 61 LFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYR 120
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALVT 240
LE G LH + + +FVG+ L+ MY +CG E ++ A+VT
Sbjct: 121 SLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVT 180
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR----------------- 283
G + AD+ F M RN+ SW V+++ +++AG LE R
Sbjct: 181 ACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTM 240
Query: 284 --------FFF----FFVSL---------------LSGCSHSGPVTKGK--HYFTAMAKF 314
FF+ FF L LS C+ +G + GK H F + F
Sbjct: 241 IVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGF 300
Query: 315 TYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ ++D G +G A+ + + MP K + V W +++ H
Sbjct: 301 LWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMH 349
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 28/167 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G I+ LHG ++K F+ S+ + +D + KCG V
Sbjct: 279 CADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNV------------------ 320
Query: 122 KFGIIRLLIMFQKMPE-RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
G+ RL+ F++MPE R +VSW +MI+ L HG+G E + F E+ G + + +
Sbjct: 321 --GMARLV--FERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFIS 376
Query: 181 AFSARASVYDLEWGPHLHSR---VVHMEPSLDVFVGSGLIDMYLKCG 224
A + +E G + + ++EP+++ + ++D+Y + G
Sbjct: 377 ILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHY--GCMVDLYGRAG 421
>gi|222631343|gb|EEE63475.1| hypothetical protein OsJ_18289 [Oryza sativa Japonica Group]
Length = 490
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 153/344 (44%), Gaps = 52/344 (15%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD-----YAESAFLRMLNPSLF 119
VG++ + LHG V K D +A + IDM+ KCG D + ES+ + + + +
Sbjct: 169 VGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNAL 228
Query: 120 CWKFG----IIRLLIMFQKMPER----DLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+ L +F++ R ++VSW ++++ ++G E + F E+ + G
Sbjct: 229 VAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGI 288
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+S+ A A++ L +H R H L+ G
Sbjct: 289 EPNSVTIPCVLPAFANIAAL-----MHGRSAHC--------------FSLR---KGFHHD 326
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
I +G ALV MYA+ G + A + FE M RN++SW +I ++ G E F
Sbjct: 327 IYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQS 386
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLG 334
F +L CS +G +G+ YF M ++ CMV LLG +G L
Sbjct: 387 SKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYSCMVTLLGRAGKLD 446
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+A +I++MP +P IWG+LLG C H N LAE+ NL QL
Sbjct: 447 DAYDIINQMPFEPDGCIWGSLLGPCRVHGNVVLAEVAAENLFQL 490
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 112/268 (41%), Gaps = 30/268 (11%)
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E ++++WN ++S L R G + + + + GF + + A SA V D+ G
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQ 177
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCG-CNGI-----ESS---IQIGKALVTMYAEGGS 247
LH VV LD V + LIDMY KCG + I ESS + ALV +
Sbjct: 178 LHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQ 237
Query: 248 TQKADLAFELMSRR----NMISWMVLISAFSQAGV-LEKPRFFFFFVS------------ 290
+A F R N++SW +++ Q G LE F S
Sbjct: 238 VSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPC 297
Query: 291 LLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+L ++ + G+ H F+ F + Y +VD+ G + +A+ + + MP +
Sbjct: 298 VLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR- 356
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNL 375
V W A++G H + A + R++
Sbjct: 357 NVVSWNAMIGGYAMHGEAENAVRLFRSM 384
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 131/272 (48%), Gaps = 39/272 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP R+ VSW+ M++ + G G E L F + G + +A A +
Sbjct: 299 LFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGV 358
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H YLK N I ++ +G ALV MYA+ G Q
Sbjct: 359 LEQGKWVHG--------------------YLKA--NNIRITVFLGTALVDMYAKCGEMQL 396
Query: 251 ADLAFELMSRRNMISWMVLISA-------------FSQAGVLEKPRFFFFFVSLLSGCSH 297
A F++M +N+++W +I FSQ L F+ L C+H
Sbjct: 397 AMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTH 456
Query: 298 SGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G V KG+ F +M + ++ CMVDLL +GLL EA++++++MP KP +IWG
Sbjct: 457 TGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWG 516
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
AL+ C H N +LAE V+++ ++L+ G+
Sbjct: 517 ALMAGCRFHKNVELAEYVVKHWIELEPDKSGA 548
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 17/160 (10%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
L+T YA G A F+ M RN +SW +++ + QAG + F
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342
Query: 287 --FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLID 341
V +L+ C+ G + +GK H + T + +VD+ G + A ++
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
M K + W ++ H A + + +L VK
Sbjct: 403 VMKEK-NVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 441
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 165/370 (44%), Gaps = 63/370 (17%)
Query: 49 LFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
++ +N M++ GV C + N++ LH LV K + + + IDM
Sbjct: 220 VYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDM 279
Query: 97 HVKCGAVDYAESAFL---RMLNPSL-------FCWKFGIIRLL-IMFQKMPERDLVSWNT 145
+ KCG + A++ F R P +C K G + + +F +M RD++++N+
Sbjct: 280 YAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYC-KLGHVDIARSLFDQMGARDVITFNS 338
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
MI+ G + L F++L HG + + +A AS+ L G LH+ +
Sbjct: 339 MITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRI 398
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
DV++ + L+DMY+KC G +A F M R++ +
Sbjct: 399 VEEDVYLVTALVDMYMKC----------------------GRVDEATAVFHRMGERDVHT 436
Query: 266 WMVLIS--AFSQAGVLEKPRF-----------FFFFVSLLSGCSHSGPVTKGKHYFTAMA 312
W +I+ AF+ G+ F ++++L+ CSHS + +G+ +F M
Sbjct: 437 WSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMR 496
Query: 313 KF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
++ CM+DLL SGLL EA L+ MP +P VIW ++L AC H N LA
Sbjct: 497 SLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLA 556
Query: 369 ELVMRNLLQL 378
+LL+L
Sbjct: 557 RHAAEHLLKL 566
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 131/311 (42%), Gaps = 50/311 (16%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII----RLLIMFQKMP 136
+A I M+ G D A AF + W ++G++ RLL+ + P
Sbjct: 140 VANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLV---QAP 196
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
ER++VSW ++I+ +R G + + F + + G + A SA + + +LE+G
Sbjct: 197 ERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRL 256
Query: 197 LH----SRVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIGK------ALVTMY 242
LH + + M L V LIDMY KCG + ++ G+ ++ Y
Sbjct: 257 LHLLVGKKRIQMTDKLVV----TLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGY 312
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFV 289
+ G A F+ M R++I++ +I+ + +G L + F F V
Sbjct: 313 CKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVV 372
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAK--FTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSK 346
SLL+ C+ G + +G+ ++ + Y V +VD+ G + EA + M +
Sbjct: 373 SLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGER 432
Query: 347 PTCVIWGALLG 357
W A++
Sbjct: 433 DVHT-WSAMIA 442
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 186/417 (44%), Gaps = 72/417 (17%)
Query: 7 LKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYLFTYNTM 55
L + + ++IH+ +I T + ++F+ L+D D ++F ++ + +YN +
Sbjct: 263 LDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVI 322
Query: 56 INGGVRCLCVGNIKMALHLHGLV-------KKFYFVSDESIAKSSID------MHVKCGA 102
I+G G K A L + K+F F + SIA +++D +H +
Sbjct: 323 ISGYA---WDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQT-I 378
Query: 103 VDYAESAFL---RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
V A+S L +++ C KF ++ F + R V W MIS + GF E
Sbjct: 379 VTTADSEILVGNSLVDMYAKCGKFEEAEMI--FTNLTHRSAVPWTAMISAYVQKGFYEEG 436
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
L F ++ +A+ A AS+ L G LHS ++ +VF GS L+D+
Sbjct: 437 LQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDV 496
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KCG I+ ++Q F+ M RN++SW +ISA++Q G
Sbjct: 497 YAKCG--SIKDAVQ--------------------TFQEMPDRNIVSWNAMISAYAQNGEA 534
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVC 322
E F F+ +LS CSHSG V +G +F +M + ++
Sbjct: 535 EATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYAS 594
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+VD+L SG EA+KL+ EMP P ++W ++L AC H N +LA L ++
Sbjct: 595 VVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNME 651
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 69/322 (21%)
Query: 58 GGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115
V C +G +I + +H V K FV + ++ + +D + K +V
Sbjct: 254 AAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSV------------ 301
Query: 116 PSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILT---RHGFGFETLCTFIELWNHGFG 172
I +F +MPE+D VS+N +IS +H + F+ F EL F
Sbjct: 302 ----------IDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDL---FRELQFTAFD 348
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+AT S ++ D E G +H++ + +S I
Sbjct: 349 RKQFPFATMLSIASNTLDWEMGRQIHAQTI----------------------VTTADSEI 386
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+G +LV MYA+ G ++A++ F ++ R+ + W +ISA+ Q G E+ F
Sbjct: 387 LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA 446
Query: 287 -------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEA 336
F SLL + ++ GK H F + F + ++D+ G + +A
Sbjct: 447 SVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDA 506
Query: 337 KKLIDEMPSKPTCVIWGALLGA 358
+ EMP + V W A++ A
Sbjct: 507 VQTFQEMPDR-NIVSWNAMISA 527
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 39/244 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++MPE D VS+N MI+ ++ G + + F+E+ N G + +A A + D
Sbjct: 206 LFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDD 265
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ G +HS V+ +VFV + L+D Y K S+ + L
Sbjct: 266 IVLGQQIHSFVIKTNFVWNVFVSNALLDFYSK------HDSVIDARKL------------ 307
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRFFFF------FVSLLSGCSH 297
F+ M ++ +S+ V+IS ++ G + + +F F F ++LS S+
Sbjct: 308 ----FDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASN 363
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ G+ T + +VD+ G EA+ + + + + V W A
Sbjct: 364 TLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHR-SAVPWTA 422
Query: 355 LLGA 358
++ A
Sbjct: 423 MISA 426
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 154/341 (45%), Gaps = 48/341 (14%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK-- 122
+G+ ++ +HGL+ + S+ + + +DM+ +CG + A + F RML W
Sbjct: 132 LGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSM 191
Query: 123 -------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
G+ L F +MP + VSW +I+ + + L F ++ G +
Sbjct: 192 LYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNH 251
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+ SA A + L+ G +H + ++ V + L+DMY
Sbjct: 252 ITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMY--------------- 296
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------- 287
A+ GS A FE + ++ +W +IS+F+ G K F+
Sbjct: 297 -------AKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGIL 349
Query: 288 -----FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKK 338
FVS+LS CSH+G + +G+ F M + + ++ CMVDLLG GLL EA+
Sbjct: 350 PNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEA 409
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LID M +P VIW +LL AC +H N +LAE+ +++ +
Sbjct: 410 LIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGMEIIKRE 450
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 87/215 (40%), Gaps = 50/215 (23%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + +HG K ++ + + +DM+ K G++ A S
Sbjct: 261 CADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFS------------- 307
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+++ +D +W TMIS T G G + + F ++ G +S+ + +
Sbjct: 308 ---------VFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSV 358
Query: 182 FSARASVYDLEWGPHLHSR---VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
SA + ++ G L + V H++P L+ + GC +
Sbjct: 359 LSACSHAGLIQEGRELFDKMREVYHIDPRLEHY------------GC------------M 394
Query: 239 VTMYAEGGSTQKADLAFELMS-RRNMISWMVLISA 272
V + GG ++A+ + M +++ W L+SA
Sbjct: 395 VDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSA 429
>gi|125528323|gb|EAY76437.1| hypothetical protein OsI_04370 [Oryza sativa Indica Group]
Length = 456
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 51/358 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T++ + ++++ LH V K S+ + + +D + K G+V A+ A
Sbjct: 42 FTFGTILQSAS---ALRDLRVGAQLHACVAKLGLCSNVFVGSALVDHYAKMGSVREAQGA 98
Query: 110 FLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETL 160
P++ + I L +F+ MPER+++SWN MI ++ G E +
Sbjct: 99 LQDTREPNVVSYTALIAGFLKNGMSGDAARLFRCMPERNVISWNAMIGGSSKAGLNEEAV 158
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F+E+ G + + ++ A+ L G +H+ + LDVF G+ L+ Y
Sbjct: 159 NLFLEMCREGVRPNESTFPCLLTSVANAGALGVGRSIHASAIKFLGKLDVFAGNSLVSFY 218
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+C GS + LAF+ + +N++SW LI ++Q G E
Sbjct: 219 ARC----------------------GSLDDSVLAFKKIKNKNVVSWNALICGYAQNGRGE 256
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTA----MAKFTYTCYFVCM 323
+ F + LL GC+H+G V +G F ++ C+
Sbjct: 257 EALDAFRRMKATGLKPDRVTLLGLLFGCNHAGLVDEGYSLFRTAEMEQPGVLRPEHYACV 316
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
VDL + +AK+ ++ +P +P V W +L+G C H+N +LA+ V +++ LD K
Sbjct: 317 VDLFSRAKRFDDAKRFLENLPFEPGIVFWKSLIGGCQIHWNRELAKSVAKHIHALDPK 374
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 22/202 (10%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP RD+VS I LTR G + + F + G + + T + +++ DL G
Sbjct: 1 MPHRDVVSATAAIGALTRSGRHRDAVALFSGILGDGIVPNEFTFGTILQSASALRDLRVG 60
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEG 245
LH+ V + +VFVGS L+D Y K G + E ++ AL+ + +
Sbjct: 61 AQLHACVAKLGLCSNVFVGSALVDHYAKMGSVREAQGALQDTREPNVVSYTALIAGFLKN 120
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLL 292
G + A F M RN+ISW +I S+AG+ E+ F F LL
Sbjct: 121 GMSGDAARLFRCMPERNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLL 180
Query: 293 SGCSHSGPVTKGKHYFTAMAKF 314
+ +++G + G+ + KF
Sbjct: 181 TSVANAGALGVGRSIHASAIKF 202
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 151/348 (43%), Gaps = 57/348 (16%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
V ++ +++HG V K F D ++ S IDM+ KCG F +L ++ W
Sbjct: 329 VEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAM 388
Query: 125 I---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
+ +F MP R+ VSW+ +I+ E E++N L
Sbjct: 389 VGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIA----GHLDCEQFDEMFEVFNEMILLGE 444
Query: 176 MLYATAFS----ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ + FS A AS L+ G +LH ++V + D +VG+ L DM
Sbjct: 445 IPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDM------------ 492
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
YA+ G + + F M ++N +SW +I +++G+ E+ F
Sbjct: 493 ----------YAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEK 542
Query: 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLL 333
F+++L CSHSG V KG YF +M +F C+VD+L +G L
Sbjct: 543 TSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRL 602
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
EA++ I MP +P W ALL C ++ N +LAE V L ++ K
Sbjct: 603 FEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLWEMAEK 650
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 152/330 (46%), Gaps = 37/330 (11%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ + + + GL+ K + D +++ S I + ++ G + A F RM + W
Sbjct: 194 CANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSW 253
Query: 122 KFGIIRLLI----------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
I+ L + +F +MP+R+ VSW+ MI+ + G+ E+L F + GF
Sbjct: 254 T-AILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGF 312
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG---- 227
+ +++ SA ASV L+ G ++H V + DVFV S LIDMY KCG
Sbjct: 313 KPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRF 372
Query: 228 -----IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA---------- 272
+E ++ A+V Y+ G ++A F +M RN +SW +I+
Sbjct: 373 LFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEM 432
Query: 273 ---FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDL 326
F++ +L + F SLL C+ + + KGK+ + K C + D+
Sbjct: 433 FEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDM 492
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
SG + +KK+ + MP K V W A++
Sbjct: 493 YAKSGDIESSKKVFNRMPKKNE-VSWTAMI 521
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 121/299 (40%), Gaps = 35/299 (11%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRL-LIMFQKMPERDLVSWN 144
I +V+ G +D A F M + W K+G +R + F++ P +++VSW
Sbjct: 94 ISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWT 153
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
IS ++GF E + FI+L + + + + A A++ D G + +V
Sbjct: 154 AAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKT 213
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALVTMYAEGGSTQKADLAF 255
D+ V + LI + L+ G + E + A++ +Y E +A F
Sbjct: 214 GYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIF 273
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVT 302
+ M +RN +SW +I+ + Q+G E+ F F S+LS + +
Sbjct: 274 DEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQ 333
Query: 303 KGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKK---LIDEMPSKPTCVIWGALLGA 358
G + + K + L+ + GE K L D + K V W A++G
Sbjct: 334 AGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEK-NMVSWNAMVGG 391
>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 157/358 (43%), Gaps = 52/358 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F Y T++ C + ++++ +H FV D+ + S +DM+ KCG A S
Sbjct: 105 FVYATLLKA---CASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSV 161
Query: 110 FLRMLNPSLFCWKF---GIIR------LLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F +L + W G R + +F + P R+L SW +IS L + G+ +
Sbjct: 162 FDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGC 221
Query: 161 CTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
FIE+ G + ++ ++ A A++ L G +H V+ GSG
Sbjct: 222 YMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVI----------GSGY--- 268
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
ES + I ALV MYA+ A F M R+++SW +I +Q G
Sbjct: 269 ---------ESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRA 319
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVC 322
++ + FV L+ CSH+G V+KG+ F AM + F C
Sbjct: 320 KEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTC 379
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
+DLL SG L EA+ LI MP KP W ALL AC H NT++ + LL L++
Sbjct: 380 FLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNM 437
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVY 189
+F +MP+RD VSW ++++ + +TL F ++ +YAT A AS+
Sbjct: 59 LFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLC 118
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG---------KALVT 240
L G +H+R V D V S L+DMY KCG I S+ A+++
Sbjct: 119 SLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLS 178
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
YA G +A F RN+ SW LIS Q+G
Sbjct: 179 GYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSG 215
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 167/351 (47%), Gaps = 51/351 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM-LNPSLFC 120
C + ++++ LH LV++ + E++ + IDM+ KCG +A+ F + P
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQS 308
Query: 121 W--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W K G + + +F +M RD++++N+M++ G E L F+ + H
Sbjct: 309 WNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDL 368
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ + +A AS+ L+ G LH+ I+ L +E+
Sbjct: 369 RVDNFTVVNLLTACASLGALQQGRALHA----------------CIEQRL------VEAD 406
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---- 287
I +G AL+ MY + G +A + F+ M +R++ +W +I+ + G+ + F+
Sbjct: 407 IYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRC 466
Query: 288 ---------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY-----FVCMVDLLGLSGLL 333
++++L+ CSHS + +G+ YF M + Y + + CM+DLLG SGLL
Sbjct: 467 DGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEM-RILYNIHPQIEHYGCMIDLLGRSGLL 525
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
EA L+ MP +P VIW ++L AC H + LA+ +LL+L+ G
Sbjct: 526 DEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDG 576
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 36/251 (14%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII-RLLIMFQKMPERD 139
++ S I M+++ G A AF + W K G++ ++ + P RD
Sbjct: 144 VSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
++SW ++I+ +R E + F + +HG + SA A + DLE G LH
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHL 263
Query: 200 RVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESSI----------QIGKALVTMYAEGGS 247
V M S ++ V LIDMY KCG G + Q A++ Y + G
Sbjct: 264 LVEEKGMPTSENLVV--ALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH 321
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
A F+ M R++I++ +++ + +G L + F V+LL+
Sbjct: 322 VDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTA 381
Query: 295 CSHSGPVTKGK 305
C+ G + +G+
Sbjct: 382 CASLGALQQGR 392
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 32/175 (18%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T++N C +G ++ LH +++ +D + + +DM++KCG VD A
Sbjct: 374 TVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT------ 427
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
I+FQ+M +RD+ +W MI+ L +G G L F ++ GF
Sbjct: 428 ----------------IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQP 471
Query: 174 SSMLYATAFSARASVYDLEWGP----------HLHSRVVHMEPSLDVFVGSGLID 218
+S+ Y +A + L G ++H ++ H +D+ SGL+D
Sbjct: 472 NSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 526
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 81/207 (39%), Gaps = 25/207 (12%)
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIE----SSIQIGKA-----LVTMYAEGGSTQKADLA 254
M PS FV + LI MY++ G I + A L++ A+ G L
Sbjct: 136 MLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLL 195
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
R++ISW LI+A+S+A + F +++LS C+ +
Sbjct: 196 LSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDL 255
Query: 302 TKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G+ + + T V ++D+ G G A+++ D + P W A++
Sbjct: 256 ELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDG 315
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H + +A + + D+ F S
Sbjct: 316 YCKHGHVDVARSLFDEMEVRDIITFNS 342
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 155/351 (44%), Gaps = 64/351 (18%)
Query: 54 TMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
T I+G + C V N+K+ +HG V + + + + I M+ C +++ A S
Sbjct: 500 TTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACS---- 555
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+F ++ RD+V WN++IS + G L E+
Sbjct: 556 ------------------VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 597
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
++++ +A A + + L G +H ++ F+ + LIDMY +CG
Sbjct: 598 VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCG-------- 649
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------ 285
S QK+ F+LM +R+++SW V+IS + G ++ F
Sbjct: 650 --------------SIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTM 695
Query: 286 ------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLG 334
F +LLS CSHSG + +G YF M K Y + CMVDLL +G
Sbjct: 696 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMM-KTEYAMDPAVEQYACMVDLLSRAGQFN 754
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
E + I++MP +P +WG+LLGAC H N LAE R L +L+ + G+
Sbjct: 755 ETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGN 805
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 138/327 (42%), Gaps = 57/327 (17%)
Query: 62 CLCVGNIKMALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C + ++ +HG +K SD + S +D + KC +V+ A F + L
Sbjct: 372 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 431
Query: 121 WKFGI------------IRLL--IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
W + I LL + FQ + E D+++WN +++ T++G G L F +
Sbjct: 432 WNAMLAGYALRGSHEEAIELLSEMKFQGI-EPDIITWNGLVTGFTQYGDGKAALEFFQRM 490
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
+ G ++ + A +A V +L+ G +H V+ L VGS LI MY GC+
Sbjct: 491 HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMY--SGCD 548
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLEKP 282
+E + + F +S R+++ W +ISA +Q+G L+
Sbjct: 549 SLEVACSV--------------------FSELSTRDVVVWNSIISACAQSGRSVNALDLL 588
Query: 283 RFFFF---------FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV--CMVDLLGL 329
R VS L CS + +GK H F TC F+ ++D+ G
Sbjct: 589 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD-TCNFILNSLIDMYGR 647
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALL 356
G + +++++ D MP + V W ++
Sbjct: 648 CGSIQKSRRIFDLMPQR-DLVSWNVMI 673
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 51/313 (16%)
Query: 2 KACGSLKSLPIARKIHAQLIS------TCLISSIFLQLI-----DDDYRVFCDIGPRYLF 50
KAC LK+ + + ++ ++S +C+ SI I D R F +I + +F
Sbjct: 198 KACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVF 257
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
+N M++G G K AL +K D+ + I + + G + A F
Sbjct: 258 MWNIMVSGYT---SKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYF 314
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
L M F + ++VSW +I+ ++G+ FE L F ++ G
Sbjct: 315 LEMGGLKDF-----------------KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG 357
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGCNGI- 228
+S+ A+A SA ++ L G +H + +E D+ VG+ L+D Y KC +
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417
Query: 229 --------ESSIQIGKALVTMYAEGGSTQKADLAFELMS-------RRNMISWMVLISAF 273
++ + A++ YA GS ++ A EL+S ++I+W L++ F
Sbjct: 418 RRKFGMIKQTDLVSWNAMLAGYALRGSHEE---AIELLSEMKFQGIEPDIITWNGLVTGF 474
Query: 274 SQAGVLEKPRFFF 286
+Q G + FF
Sbjct: 475 TQYGDGKAALEFF 487
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
MF KM ER++ SW ++ + G ET+ F + N G ++ F A + + +
Sbjct: 146 MFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKN 205
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE---------SSIQIGKALVTM 241
G ++ ++ + + V ++DM++KCG I + + +V+
Sbjct: 206 YRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSG 265
Query: 242 YAEGGSTQKADLAFELMS----RRNMISWMVLISAFSQAGVLEKPRFFFF 287
Y G +KA M + + ++W +IS ++Q+G E+ +F
Sbjct: 266 YTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFL 315
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 78/208 (37%), Gaps = 39/208 (18%)
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+YA+ +Y+L G +H+++V + F+GS L+++Y + GC
Sbjct: 91 IYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC----------- 139
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------- 287
+ A F+ MS RN+ SW ++ + G E+ F+
Sbjct: 140 -----------VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRP 188
Query: 288 ----FVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLI 340
F + CS GK + M + +C ++D+ G + A++
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLA 368
+E+ K +W ++ S K A
Sbjct: 249 EEIEFKDV-FMWNIMVSGYTSKGEFKKA 275
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+++ + C + +++ + K F S +A S I M+ + G +D A A
Sbjct: 377 FTFSSTLKA---CANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKA 433
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F I+F E++L+S+NT+I ++ E L F E+ +
Sbjct: 434 FD------------------ILF----EKNLISYNTVIDAYAKNLNSEEALELFNEIEDQ 471
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G G S+ +A+ S AS+ + G +H+RV+ L+ V + LI MY +CG IE
Sbjct: 472 GMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCG--NIE 529
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
S+ Q+ FE M RN+ISW +I+ F++ G + F
Sbjct: 530 SAFQV--------------------FEDMEDRNVISWTSIITGFAKHGFATQALELFHKM 569
Query: 288 -----------FVSLLSGCSHSGPVTKG-KHY---FTAMAKFTYTCYFVCMVDLLGLSGL 332
++++LS CSH G V +G KH+ +T ++ C+VD+LG SG
Sbjct: 570 LEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGS 629
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EA + I+ MP K ++W LGAC H N +L + + +++ +
Sbjct: 630 LSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQE 676
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 37/255 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+KMPER+ V+W MI+ L + G+ E + F+++ G+ + SA A++
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G LHS+ + +LD VG LI+MY KC + GS
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVD-------------------GSMCA 327
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCS 296
A F+ + N+ SW +I+ + Q G ++ F F S L C+
Sbjct: 328 ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387
Query: 297 HSGPVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ + G+ FT K ++ C ++ + SG + +A+K D + K + +
Sbjct: 388 NLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEK-NLISYN 446
Query: 354 ALLGACCSHYNTKLA 368
++ A + N++ A
Sbjct: 447 TVIDAYAKNLNSEEA 461
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 43/218 (19%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
+C+ + + +H + + D S I ++ KCG + A S F R++ S
Sbjct: 75 KCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF-RLMGSS--- 130
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
RDL+SW+ M+S + GF L TF+++ +G+ + +A
Sbjct: 131 -----------------RDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAA 173
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
A A ++ + G + V+ DV VG GLIDM++K G + S+ ++
Sbjct: 174 ATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFKV----- 227
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
FE M RN ++W ++I+ Q G
Sbjct: 228 ---------------FEKMPERNAVTWTLMITRLMQFG 250
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 65/227 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLIS------TCLISSIFLQL-----IDDDYRVFCDIGPRYL 49
+KAC +L +L I ++ + C+ +S+ IDD + F + + L
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNL 442
Query: 50 FTYNTMINGGVRCL--------------------------------CVGNIKMALHLHGL 77
+YNT+I+ + L +G I +H
Sbjct: 443 ISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHAR 502
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V K ++S+ + I M+ +CG + ESAF +F+ M +
Sbjct: 503 VIKSGLKLNQSVCNALISMYSRCGNI---ESAFQ-------------------VFEDMED 540
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
R+++SW ++I+ +HGF + L F ++ G + + Y SA
Sbjct: 541 RNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSA 587
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 159/350 (45%), Gaps = 59/350 (16%)
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
+TM+ C G+I++ LH ++ F S+ I ID++ KCG V+ A
Sbjct: 198 STMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA------ 251
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
C +FQ + ++D++SWNT+I T E L F E+ G
Sbjct: 252 -------CG---------LFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES 295
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + + A A + ++ G +H +Y+ G+ ++
Sbjct: 296 PNDVTMLSVLPACAHLGAIDIGRWIH--------------------VYINKRLKGVTNAS 335
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+ +L+ MYA+ G + A F+ M R++ SW +I F+ G F
Sbjct: 336 SLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKN 395
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLLGE 335
FV LLS CSHSG + G+H F +M++ + T ++ CM+DLLG GL E
Sbjct: 396 GIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKE 455
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
AK++I MP +P VIW +LL AC H N +L E +NL++++ + GS
Sbjct: 456 AKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGS 505
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 117/281 (41%), Gaps = 30/281 (10%)
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
G+ + +F+ + E +L+ WNTM + L ++ + + G +S +
Sbjct: 14 GLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLK 73
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK------- 236
+ A L G +H V+ + LD++V + LI MY + G +E + ++
Sbjct: 74 SCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNG--RLEDAHKVFDRSSHRHV 131
Query: 237 ----ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
AL+T YA G A F+ +S ++++SW +IS + + ++ +
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191
Query: 287 -------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEA 336
V+++S C+ SG + G+ H + F V ++DL G + A
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA 251
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
L + +K + W L+G K A L+ + +L+
Sbjct: 252 CGLFQGL-AKKDVISWNTLIGGHTHMNLYKEALLLFQEMLR 291
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 135/267 (50%), Gaps = 40/267 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVY 189
+F +MP+RD SW+ M+S ++ G E L F+E+ + + +A SA A +
Sbjct: 229 LFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLR 288
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
LE G LHS + + ++V +G+ L+DMY KCG S
Sbjct: 289 ALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCG----------------------SIL 326
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCS 296
A F LMS RN+ SW +I+ + G ++ F+ F++LL+GCS
Sbjct: 327 DAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCS 386
Query: 297 HSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
HSG +T+G+ F+ M + ++ CMVDLLG +GL+ EA +++MP KP +W
Sbjct: 387 HSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSELW 446
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
GAL+GAC H +L E + + L+ L+
Sbjct: 447 GALVGACRIHGQVELGEELGKRLIDLE 473
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMY-----LKCGCNGIESSIQI-----GKALVTMYA 243
G LH+ VV DVFV + +I +Y L+ + S + L+T ++
Sbjct: 128 GHQLHAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFS 187
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G +A F+LM +N +SW +IS ++ + + + R F
Sbjct: 188 NSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLF 230
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 155/351 (44%), Gaps = 64/351 (18%)
Query: 54 TMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
T I+G + C V N+K+ +HG V + + + + I M+ C +++ A S
Sbjct: 500 TTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACS---- 555
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+F ++ RD+V WN++IS + G L E+
Sbjct: 556 ------------------VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 597
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
++++ +A A + + L G +H ++ F+ + LIDMY +CG
Sbjct: 598 VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCG-------- 649
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------ 285
S QK+ F+LM +R+++SW V+IS + G ++ F
Sbjct: 650 --------------SIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTM 695
Query: 286 ------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLG 334
F +LLS CSHSG + +G YF M K Y + CMVDLL +G
Sbjct: 696 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMM-KTEYAMDPAVEQYACMVDLLSRAGQFN 754
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
E + I++MP +P +WG+LLGAC H N LAE R L +L+ + G+
Sbjct: 755 ETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGN 805
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 138/327 (42%), Gaps = 57/327 (17%)
Query: 62 CLCVGNIKMALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C + ++ +HG +K SD + S +D + KC +V+ A F + L
Sbjct: 372 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 431
Query: 121 WKFGI------------IRLL--IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
W + I LL + FQ + E D+++WN +++ T++G G L F +
Sbjct: 432 WNAMLAGYALRGSHEEAIELLSEMKFQGI-EPDIITWNGLVTGFTQYGDGKAALEFFQRM 490
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
+ G ++ + A +A V +L+ G +H V+ L VGS LI MY GC+
Sbjct: 491 HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMY--SGCD 548
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLEKP 282
+E + + F +S R+++ W +ISA +Q+G L+
Sbjct: 549 SLEVACSV--------------------FSELSTRDVVVWNSIISACAQSGRSVNALDLL 588
Query: 283 RFFFF---------FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV--CMVDLLGL 329
R VS L CS + +GK H F TC F+ ++D+ G
Sbjct: 589 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD-TCNFILNSLIDMYGR 647
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALL 356
G + +++++ D MP + V W ++
Sbjct: 648 CGSIQKSRRIFDLMPQR-DLVSWNVMI 673
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 51/313 (16%)
Query: 2 KACGSLKSLPIARKIHAQLIS------TCLISSIFLQLI-----DDDYRVFCDIGPRYLF 50
KAC LK+ + + ++ ++S +C+ SI I D R F +I + +F
Sbjct: 198 KACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVF 257
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
+N M++G G K AL +K D+ + I + + G + A F
Sbjct: 258 MWNIMVSGYTS---KGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYF 314
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
L M F + ++VSW +I+ ++G+ FE L F ++ G
Sbjct: 315 LEMGGLKDF-----------------KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG 357
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGCNGI- 228
+S+ A+A SA ++ L G +H + +E D+ VG+ L+D Y KC +
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417
Query: 229 --------ESSIQIGKALVTMYAEGGSTQKADLAFELMS-------RRNMISWMVLISAF 273
++ + A++ YA GS ++ A EL+S ++I+W L++ F
Sbjct: 418 RRKFGMIKQTDLVSWNAMLAGYALRGSHEE---AIELLSEMKFQGIEPDIITWNGLVTGF 474
Query: 274 SQAGVLEKPRFFF 286
+Q G + FF
Sbjct: 475 TQYGDGKAALEFF 487
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 15/200 (7%)
Query: 101 GAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
VD E R+L ++C + MF KM ER++ SW ++ + G ET+
Sbjct: 118 NGVDVCEFLGSRLL--EVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETI 175
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F + N G ++ F A + + + G ++ ++ + + V ++DM+
Sbjct: 176 KLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMF 235
Query: 221 LKCGCNGIE---------SSIQIGKALVTMYAEGGSTQKADLAFELMS----RRNMISWM 267
+KCG I + + +V+ Y G +KA M + + ++W
Sbjct: 236 IKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWN 295
Query: 268 VLISAFSQAGVLEKPRFFFF 287
+IS ++Q+G E+ +F
Sbjct: 296 AIISGYAQSGQFEEASKYFL 315
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 78/208 (37%), Gaps = 39/208 (18%)
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+YA+ +Y+L G +H+++V + F+GS L+++Y + GC
Sbjct: 91 IYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC----------- 139
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------- 287
+ A F+ MS RN+ SW ++ + G E+ F+
Sbjct: 140 -----------VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRP 188
Query: 288 ----FVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLI 340
F + CS GK + M + +C ++D+ G + A++
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLA 368
+E+ K +W ++ S K A
Sbjct: 249 EEIEFKDV-FMWNIMVSGYTSKGEFKKA 275
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 63/316 (19%)
Query: 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144
SD + + + + +CG VD AES +F MP+R+++SW
Sbjct: 149 SDAAARNALLSAYARCGRVDDAES----------------------LFAGMPDRNVISWT 186
Query: 145 TMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
M+S ++G E + TF+E+W G + + ++ A A+V L G +
Sbjct: 187 AMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPACAAVGALALGRKVERYARG 246
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE-LMSRRN 262
+V+V + L++MY KC GS ++A + F + +R+
Sbjct: 247 RGMLTNVYVANALVEMYAKC----------------------GSIRRAWMVFRGIGKQRD 284
Query: 263 MISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFT 309
+ SW +I AF+ G+ + F FV ++ C+H G V +GK F
Sbjct: 285 LCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFN 344
Query: 310 AMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
+M + ++ CMVDLLG +GLL EA LI MP +P VIWGALLGAC H N
Sbjct: 345 SMREEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGACSFHGNL 404
Query: 366 KLAELVMRNLLQLDVK 381
+LAE+ + L++L+ +
Sbjct: 405 ELAEVAVEKLMRLEPQ 420
>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Brachypodium distachyon]
Length = 610
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 156/350 (44%), Gaps = 56/350 (16%)
Query: 60 VRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
+R LC+G LHG + SD+ + S IDM+ KCG D A F ++ +
Sbjct: 118 LRSLCLGK-----QLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSV 172
Query: 120 CWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
W I L +F+ MP R L +W +IS R G + F+++ G
Sbjct: 173 MWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDG 232
Query: 171 FGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + + ++A A + G LHS + + S + VG+ ++DMY K C+ I
Sbjct: 233 VSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSK--CSDIH 290
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
S+ ++ FE ++ R++ISW ++ +Q G E+ +
Sbjct: 291 SAREV--------------------FEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRM 330
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSG 331
FV L+ CSH+G V KG+ F +M K Y ++ C +DLL SG
Sbjct: 331 VLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSM-KGEYGINPRLQHYTCYLDLLSRSG 389
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
L EA++LI MP P W +LL AC + N +++ V NLL+L K
Sbjct: 390 HLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPK 439
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 16/177 (9%)
Query: 116 PSLFCWKFGIIRLL----IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE--LWNH 169
P+L + RLL ++F + P RDL ++++++ ++ H E + + L
Sbjct: 41 PALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVS-HSESPELVLPLLRRMLSAD 99
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG-- 227
+ A+ SA A + L G LH V S D V S LIDMY KCG
Sbjct: 100 ALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDA 159
Query: 228 -------IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+ + + AL++ Y G + +A F M R + +W LIS F ++G
Sbjct: 160 RKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSG 216
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 157/345 (45%), Gaps = 60/345 (17%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM++ C + ++ + + HG + K S+ + + IDM+ KCG++ AE+ F
Sbjct: 532 TMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLF--H 589
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
LN + +D VSWN MI+ +G E + TF ++
Sbjct: 590 LNKHV-------------------KDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRP 630
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ + + T A + + L H+ ++ M G SS
Sbjct: 631 NLVTFVTILPAVSYLSILREAMAFHACIIRM----------------------GFISSTL 668
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------ 287
IG +L+ MYA+ G ++ F M + ISW ++S ++ G E F
Sbjct: 669 IGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETH 728
Query: 288 -------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEA 336
++S+LS C H+G + +G++ F +M + ++ CMVDLLG +GL E
Sbjct: 729 VPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEV 788
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
LID+MP++P +WGALLGAC H N KL E+ + +LL+L+ +
Sbjct: 789 LCLIDKMPTEPDAQVWGALLGACKMHSNVKLGEIALHHLLKLEPR 833
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 132/331 (39%), Gaps = 59/331 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + ++ +H V K SD S+A + + M+ +C + YA
Sbjct: 439 CAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYA--------------- 483
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ +F +M +D+V+WNT+I+ T+ G L F+ L G S +
Sbjct: 484 -------MTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSL 536
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG--CNGIESSIQIGK--- 236
SA A + DL G H ++ ++ V LIDMY KCG C E+ + K
Sbjct: 537 LSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTA-ENLFHLNKHVK 595
Query: 237 ------ALVTMYAEGGSTQKADLAFELMS----RRNMISWMVLISAFSQAGVLEKPRFFF 286
++ Y G +A F M R N+++++ ++ A S +L + F
Sbjct: 596 DEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFH 655
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
C M + T ++D+ SG L ++K EM +K
Sbjct: 656 -------AC------------IIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENK 696
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
T + W A+L H ++A L + +L+Q
Sbjct: 697 GT-ISWNAMLSGYAMHGQGEVA-LALFSLMQ 725
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 44/189 (23%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
++ S IDM+ KCG V A +F +M +D +SW TM++
Sbjct: 264 VSNSLIDMYSKCGEVKLAHQ----------------------IFDQMWVKDDISWATMMA 301
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
HG FE L E+ ++ + + A DLE G +H+ + + +
Sbjct: 302 GYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTS 361
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
D+ V + ++ MY KC G +KA F + R+++ W
Sbjct: 362 DIVVATPIVSMYAKC----------------------GELKKAKEFFLSLEGRDLVVWSA 399
Query: 269 LISAFSQAG 277
+SA QAG
Sbjct: 400 FLSALVQAG 408
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 53/254 (20%)
Query: 31 LQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA 90
LQL+D+ R + +++N + +++ +H + SD +A
Sbjct: 313 LQLLDEMKRKHIKMNKI------SVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVA 366
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150
+ M+ KCG + A+ FL + RDLV W+ +S L
Sbjct: 367 TPIVSMYAKCGELKKAKEFFL----------------------SLEGRDLVVWSAFLSAL 404
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
+ G+ E L F E+ + G + ++ SA A + G +H V+ + D+
Sbjct: 405 VQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDI 464
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
V + L+ MY +C MYA F M +++++W LI
Sbjct: 465 SVATTLVSMYTRCKS--------------FMYAM--------TLFNRMHYKDVVAWNTLI 502
Query: 271 SAFSQAGVLEKPRF 284
+ F++ G PR
Sbjct: 503 NGFTKCG---DPRL 513
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 39/283 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAFSARASVY 189
+F KMP +D+ SWN MIS L++ E L F + G S+ A + +
Sbjct: 184 VFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLE 243
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI------QIGKALVTM-- 241
D++ +H VV + V + LIDMY KCG + I + + TM
Sbjct: 244 DVDSCKSIHGYVV--RRCVFGVVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMA 301
Query: 242 -YAEGGSTQKADLAFELMSRR----NMISWMVLISAFSQAGVLEKPRFFFFF-------- 288
Y G + + M R+ N IS + + A ++ LEK + +
Sbjct: 302 GYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTS 361
Query: 289 --------VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLI 340
VS+ + C G + K K +F ++ + + L+ +G GEA +
Sbjct: 362 DIVVATPIVSMYAKC---GELKKAKEFFLSLEGRDLVVWSAFLSALVQ-AGYPGEALSIF 417
Query: 341 DEMPS---KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
EM KP I +L+ AC +++L +++ +++ D+
Sbjct: 418 QEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADM 460
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
L+ WN++I +R E + ++ + G + A D G +H
Sbjct: 92 LILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQ 151
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+ E DVF+G+GL+DMY K G A F+ M
Sbjct: 152 DIASRELECDVFIGTGLVDMYCKM----------------------GHLDNARKVFDKMP 189
Query: 260 RRNMISWMVLISAFSQA 276
+++ SW +IS SQ+
Sbjct: 190 GKDVASWNAMISGLSQS 206
>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
Length = 1024
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 101/439 (23%), Positives = 183/439 (41%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLIST-----CLISSIFLQL------IDDDYRVFCDIGPRYL 49
+K C L L + +IH+Q+I T + S+ + + +D + + + +
Sbjct: 457 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 516
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++ TMI G G+R C + +K +H
Sbjct: 517 VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 576
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
F SD + + ++ +CG + E ++L F++
Sbjct: 577 ACVSGFSSDLPFQNALVTLYSRCGKI---EESYL-------------------AFEQTEA 614
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D ++WN ++S + G E L F+ + G ++ + +A A + +++ G +
Sbjct: 615 GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV 674
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ + G +S ++ AL++MYA+ GS A+ F
Sbjct: 675 HAVITKT----------------------GYDSETEVCNALISMYAKCGSISDAEKQFLE 712
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+S +N +SW +I+A+S+ G + F V +LS CSH G V KG
Sbjct: 713 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 772
Query: 305 KHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
YF +M +++ + ++VC+VD+L +GLL AK+ I EMP KP ++W LL AC
Sbjct: 773 IAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACV 832
Query: 361 SHYNTKLAELVMRNLLQLD 379
H N ++ E +LL+L+
Sbjct: 833 VHKNMEIGEFAAHHLLELE 851
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 150/354 (42%), Gaps = 73/354 (20%)
Query: 33 LIDD---DYRVFC-----DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFV 84
L+DD +R+F +I P +TY +++ C+ +G++++ +H + K F
Sbjct: 427 LLDDLRNSFRIFRQMQIEEIVPNQ-YTYPSILK---TCIRLGDLELGEQIHSQIIKTNFQ 482
Query: 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144
+ + IDM+ K G +D A W +LI F +D+VSW
Sbjct: 483 LNAYVCSVLIDMYAKLGKLDTA--------------WD-----ILIRFAG---KDVVSWT 520
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
TMI+ T++ F + L TF ++ + G + A SA A + L+ G +H++
Sbjct: 521 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC-- 578
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+G S + ALVT+Y+ G +++ LAFE + I
Sbjct: 579 --------------------VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI 618
Query: 265 SWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAM 311
+W L+S F Q+G E+ R F F F S + S + + +GK +
Sbjct: 619 AWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVI 678
Query: 312 AKFTYTCYF-VC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
K Y VC ++ + G + +A+K E+ +K V W A++ A H
Sbjct: 679 TKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE-VSWNAIINAYSKH 731
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 154/391 (39%), Gaps = 67/391 (17%)
Query: 9 SLPIARKIHAQLI------STCLISSIF-LQLIDDD----YRVFCDIGPRYLFTYNTMIN 57
SL RK+H+Q++ + CL +F L D ++VF ++ R +FT+N MI
Sbjct: 60 SLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIK 119
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV--DYAESAFLRML- 114
+G + L + + + V+ S + + G+V D E R+L
Sbjct: 120 ELASRNLIGEV-FGLFVRMVSEN---VTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 175
Query: 115 ----------NPSLFCW-KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
NP + + + G + L +F + +D SW MIS L+++ E +
Sbjct: 176 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRL 235
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F +++ G + +++ SA + LE G LH V+ + S D +V
Sbjct: 236 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV---------- 285
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
CN ALV++Y G+ A+ F MS+R+ +++ LI+ SQ G EK
Sbjct: 286 --CN----------ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 333
Query: 283 RFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL 329
F SL+ CS G + +G+ K + LL L
Sbjct: 334 MELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 393
Query: 330 SGLLGEAKKLIDEM--PSKPTCVIWGALLGA 358
+ + +D V+W +L A
Sbjct: 394 YAKCADIETALDYFLETEVENVVLWNVMLVA 424
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 122/328 (37%), Gaps = 95/328 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL------------QLIDDDYRVFCDIGPRY 48
+ AC ++SL I ++H ++ S ++ LI ++ +F ++ R
Sbjct: 255 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH-IFSNMSQRD 313
Query: 49 LFTYNTMING--------------------------------GVRCLCVGNIKMALHLHG 76
TYNT+ING V C G + LH
Sbjct: 314 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 373
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K F S+ I + ++++ KC ++ A FL ++ W +M
Sbjct: 374 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN-------VM----- 421
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
LV++ + + R+ F E+ + + S+L + DLE G
Sbjct: 422 ---LVAYGLLDDL--RNSFRIFRQMQIEEIVPNQYTYPSILKTC-----IRLGDLELGEQ 471
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+HS+++ L+ +V S LIDMY K G K D A++
Sbjct: 472 IHSQIIKTNFQLNAYVCSVLIDMYAKLG-------------------------KLDTAWD 506
Query: 257 LMSR---RNMISWMVLISAFSQAGVLEK 281
++ R ++++SW +I+ ++Q +K
Sbjct: 507 ILIRFAGKDVVSWTTMIAGYTQYNFDDK 534
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/364 (20%), Positives = 140/364 (38%), Gaps = 70/364 (19%)
Query: 39 RVFCD-----IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
R+FCD I P + ++++++ C + ++++ LHGLV K F SD + +
Sbjct: 234 RLFCDMYVLGIMPT-PYAFSSVLSA---CKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 289
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+ ++ G + AE +F M +RD V++NT+I+ L++
Sbjct: 290 VSLYFHLGNLISAEH----------------------IFSNMSQRDAVTYNTLINGLSQC 327
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G+G + + F + G S A+ A ++ L G LH+ +
Sbjct: 328 GYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKL--------- 378
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA- 272
G S+ +I AL+ +YA+ + A F N++ W V++ A
Sbjct: 379 -------------GFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 425
Query: 273 ------------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY- 319
F Q + E + + S+L C G + G+ + + K +
Sbjct: 426 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 485
Query: 320 FVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+VC ++D+ G L A ++ K V W ++ + A R +L
Sbjct: 486 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDV-VSWTTMIAGYTQYNFDDKALTTFRQMLD 544
Query: 378 LDVK 381
++
Sbjct: 545 RGIR 548
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/263 (19%), Positives = 94/263 (35%), Gaps = 45/263 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA-RASVY 189
+F +MPER + +WN MI L E F+ + + + ++ A R
Sbjct: 102 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 161
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ +H+R+++ G+ S + L+ +Y+ G
Sbjct: 162 AFDVVEQIHARILYQ----------------------GLRDSTVVCNPLIDLYSRNGFVD 199
Query: 250 KADLAFELMSRRNMISWMVLISAFSQA----------------GVLEKPRFFFFFVSLLS 293
A F+ + ++ SW+ +IS S+ G++ P + F S+LS
Sbjct: 200 LARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTP---YAFSSVLS 256
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTC-YFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C + G+ + K ++ +VC +V L G L A+ + M +
Sbjct: 257 ACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT 316
Query: 351 IWGALLGACCSHYNTKLAELVMR 373
+ G Y K EL R
Sbjct: 317 YNTLINGLSQCGYGEKAMELFKR 339
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 147/332 (44%), Gaps = 49/332 (14%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL----- 129
HGLV + S ++ + I M+ C V A F + F W I L
Sbjct: 292 HGLVVRAGLGSRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRV 351
Query: 130 ----IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+F MP++D VSW+ MI+ ++ E L F + H + + SA
Sbjct: 352 EDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISAC 411
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
++ LE G +H + + ++ + +G+ LIDMY+KCGC +E+++++
Sbjct: 412 TNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGC--MEAALEV----------- 458
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSL 291
F+++ + W +I + G++ + F F +
Sbjct: 459 ---------FDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPSEITFTGV 509
Query: 292 LSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LS C H G V +G+ +F M ++ CMVDLLG +G + EA+ LI MP P
Sbjct: 510 LSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRAGYVREAEDLIQSMPMSP 569
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
WGALLGAC H ++++ E V + L++LD
Sbjct: 570 DVPAWGALLGACWKHSDSEVGERVGKKLVKLD 601
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 113/294 (38%), Gaps = 35/294 (11%)
Query: 97 HVKCGAVDYAESAFLRMLNPS---------LFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+V+ G V+ A F RM S LF + +F RD +W MI
Sbjct: 182 YVRDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMI 241
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
S R+ E L F ++ G+ + + + +A A ++ G H VV
Sbjct: 242 SCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLG 301
Query: 208 LDVFVGSGLIDMYLKC-----GCNGIESSIQIG----KALVTMYAEGGSTQKADLAFELM 258
V V + LI MY C +SS + ++++ Y + G + A F +M
Sbjct: 302 SRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVM 361
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK 305
++ +SW +I+ Q + F VS++S C++ + +GK
Sbjct: 362 PDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGK 421
Query: 306 HYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ ++ Y V ++D+ G + A ++ D + K T W A++
Sbjct: 422 LVHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGT-PCWNAVI 474
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 160/358 (44%), Gaps = 48/358 (13%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TMI C V ++ + H +K+ + + +DM+VKCG + A F M
Sbjct: 261 TMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNM 320
Query: 114 LNPSLFCW--------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
+L W +FG + + + K+PE+ +V WN +IS + G E L F
Sbjct: 321 AQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFH 380
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
E+ + SA + + L+ G +H + + S+DV +G+ L+DMY KCG
Sbjct: 381 EMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCG 440
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF 284
I +AL FE + +RN ++W +I + G +
Sbjct: 441 --------NIARALQV--------------FEEIPQRNCLTWTAVICGLALHGNAQDALS 478
Query: 285 FF-------------FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLL 327
+F F+ +LS C H G V +G+ YF+ M +KF + ++ CMVDLL
Sbjct: 479 YFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLL 538
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
G +G L EA++L+ MP + GAL AC + N ++ E LL++D + G+
Sbjct: 539 GRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGN 596
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 96/432 (22%), Positives = 160/432 (37%), Gaps = 94/432 (21%)
Query: 8 KSLPIARKIHAQLISTCLISSIFL-----------QLIDDDY--RVFCDIGPRYLFTYNT 54
KSL ++I AQ++ST LI + F + + DY R+ I +F++N
Sbjct: 68 KSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNA 127
Query: 55 MINGGV-------------RCLCVGNIKMALHLH--------------------GLVKKF 81
I G V R L G +K H + G V KF
Sbjct: 128 AIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKF 187
Query: 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV 141
F D + +SI M + CG + A +F K RDLV
Sbjct: 188 GFECDIFVHNASITMLLSCGELSVAYD----------------------VFNKSRVRDLV 225
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
+WN+MI+ + G E + + E+ + + S+ + V DL G H +
Sbjct: 226 TWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYI 285
Query: 202 VHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKAD 252
+ + + L+DMY+KCG N + ++ +V YA G A
Sbjct: 286 KEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAR 345
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSG 299
+ ++++ W +IS QA ++ F V+ LS CS G
Sbjct: 346 EILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLG 405
Query: 300 PVTKG--KHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ G H++ K + +VD+ G + A ++ +E+P + C+ W A++
Sbjct: 406 ALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQR-NCLTWTAVI 464
Query: 357 GACCSHYNTKLA 368
H N + A
Sbjct: 465 CGLALHGNAQDA 476
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 112/427 (26%), Positives = 182/427 (42%), Gaps = 103/427 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYL 49
+ +CGSL +L R++HA I + + F++ LID D +VF + L
Sbjct: 350 LNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDL 409
Query: 50 FTYNTMINGGVRC--LCVG------------------------------NIKMALHLHGL 77
+YN MI G R LC +++++ +HGL
Sbjct: 410 VSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGL 469
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ K+ DE + ID++ KC V G RL+ F+++ +
Sbjct: 470 IIKYGVSLDEFAGSALIDVYSKCSRV--------------------GDARLV--FEEIQD 507
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D+V W M S T+ E+L + L + +A +A +++ L G
Sbjct: 508 KDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQF 567
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H++V+ M D FV + L+DMY A+ GS ++A AF
Sbjct: 568 HNQVIKMGFDDDPFVANTLVDMY----------------------AKSGSIEEAHKAFIS 605
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+ ++ W +I+ ++Q G EK F FV +LS CSH+G + G
Sbjct: 606 TNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLG 665
Query: 305 KHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+F +M++F ++VCMV LLG +G L EAK+ I++MP K V+W +LL AC
Sbjct: 666 FDHFDSMSQFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRV 725
Query: 362 HYNTKLA 368
N +L
Sbjct: 726 SGNVELG 732
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/401 (21%), Positives = 166/401 (41%), Gaps = 78/401 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID--------DDYRVFCD-IGPRYL 49
++AC L A +IH ++ + +++ LID DD R+ D + +
Sbjct: 148 VRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTS 207
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM-----------HV 98
FT+ T+I G + G +++L L +K+ + D+ + S + +
Sbjct: 208 FTWTTIIAGYSK---QGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQI 264
Query: 99 KCGAVDYAESAFLRMLNPSL----FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG 154
C + + M+N + C K + R L F +M ++++VSW T+I+ ++
Sbjct: 265 HCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKL--FDRMVDKNVVSWTTVIAGCMQNS 322
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
F + L F+E+ G+ + + ++ S+ LE G +H+ + + D FV +
Sbjct: 323 FHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKN 382
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
GLIDMY KC S A F LM+ +++S+ +I +S
Sbjct: 383 GLIDMYAKC----------------------DSLTDARKVFNLMAAIDLVSYNAMIEGYS 420
Query: 275 QAGVLEKPRFFF-------------FFVSLL--SGCSHSGPVTKGKH-----YFTAMAKF 314
+ L + F FVSLL S + ++ H Y ++ +F
Sbjct: 421 RQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEF 480
Query: 315 TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
+ ++D+ +G+A+ + +E+ K V+W A+
Sbjct: 481 AGS----ALIDVYSKCSRVGDARLVFEEIQDK-DIVVWTAM 516
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 23/148 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F M ++LV+W++M+S+ T H E L F++ + + A+ A
Sbjct: 96 LFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFG 155
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L +H VV DV+V + LID Y K C
Sbjct: 156 GLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHAC----------------------ID 193
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAG 277
A L F+ + + +W +I+ +S+ G
Sbjct: 194 DARLLFDGLQVKTSFTWTTIIAGYSKQG 221
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 104/441 (23%), Positives = 183/441 (41%), Gaps = 117/441 (26%)
Query: 1 MKACGSLKSLPIARKIHAQLIST-----CLISSIFLQL------IDDDYRVFCDIGPRYL 49
+K C +L + + +IH Q++ T +SS+ + + +D ++F + +
Sbjct: 445 LKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDV 504
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++ MI G G++ C + + +H
Sbjct: 505 VSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQ 564
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ D SI + + ++ +CG V A +AF ++
Sbjct: 565 SCLSGYSDDLSIGNALVSLYARCGKVREAYAAF----------------------DQIYA 602
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D VSWN+++S + G+ E L F ++ G ++S + +A SA A++ ++ G +
Sbjct: 603 KDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQI 662
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H G+I G +S ++ AL+T+YA+ G+
Sbjct: 663 H----------------GMIRK------TGYDSETEVSNALITLYAKCGTIDD------- 693
Query: 258 MSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
ISW +I+ +SQ G E + F FV +LS CSH G V +G
Sbjct: 694 ------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEG 747
Query: 305 KHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
YF +M++ ++ C+VDLLG SGLL AK+ ++EMP +P ++W LL AC
Sbjct: 748 ISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACN 807
Query: 361 SHYNTKLAELVMRNLLQLDVK 381
H N + E +LL+L+ K
Sbjct: 808 VHKNIDIGEFAASHLLELEPK 828
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 130/312 (41%), Gaps = 78/312 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF---------------------------LQL 33
+ AC S+ +LP ++ H+ I + S I L
Sbjct: 359 LSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDN 418
Query: 34 IDDDYRVFCDIGPRYL----FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESI 89
++ +++F + + FTY +++ C +G + +H V K F + +
Sbjct: 419 LNKSFQIFTQMQIEGIVPNQFTYPSILK---TCTTLGATDLGEQIHTQVLKTGFQFNVYV 475
Query: 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISI 149
+ IDM+ K G +D+A L +F+++ E D+VSW MI+
Sbjct: 476 SSVLIDMYAKHGKLDHA----------------------LKIFRRLKENDVVSWTAMIAG 513
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
T+H E L F E+ + G ++ +A+A SA A + L+ G +H++ S D
Sbjct: 514 YTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDD 573
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
+ +G+ L+ +Y +C G ++A AF+ + ++ +SW L
Sbjct: 574 LSIGNALVSLYARC----------------------GKVREAYAAFDQIYAKDNVSWNSL 611
Query: 270 ISAFSQAGVLEK 281
+S F+Q+G E+
Sbjct: 612 VSGFAQSGYFEE 623
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 87/395 (22%), Positives = 151/395 (38%), Gaps = 80/395 (20%)
Query: 1 MKAC-GSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRY 48
++ C G+ S +IHA+ I++ SS F+ LID +VF ++ R
Sbjct: 170 LRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARD 229
Query: 49 LFTYNTMINGGVR------------------CLCVGNIKMALHLHGLVKKFYFVSDESIA 90
++ MI+G + C V + LHGLV K F S+ +
Sbjct: 230 SVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVC 289
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150
+ + ++ + G + AE +F M +RD VS+N++IS L
Sbjct: 290 NALVTLYSRSGNLSSAEQ----------------------IFHCMSQRDRVSYNSLISGL 327
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
+ G+ L F ++ + A+ SA ASV L G HS + + D+
Sbjct: 328 AQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDI 387
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
V L+D+Y+KC S I+ Y G + +F++ ++ +
Sbjct: 388 VVEGSLLDLYVKC------SDIKTAHEFFLCY---GQLDNLNKSFQIFTQMQI------- 431
Query: 271 SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK--FTYTCYFVC-MVDLL 327
G++ F + S+L C+ G G+ T + K F + Y ++D+
Sbjct: 432 -----EGIVPNQ---FTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMY 483
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G L A K+ + V W A++ H
Sbjct: 484 AKHGKLDHALKIFRRLKENDV-VSWTAMIAGYTQH 517
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 129/267 (48%), Gaps = 40/267 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF--GLSSMLYATAFSARASV 188
+F ++P RD+VSWN+MIS T +G+ + + F ++ G + T A A
Sbjct: 175 VFDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQA 234
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
D+ G +H +V LD VG+GLI +Y CG +++ +A+
Sbjct: 235 ADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCG------YVRMARAI---------- 278
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
F+ +S R++I W +I + G+ ++ F F+ LLS C
Sbjct: 279 ------FDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLVGAGLRPDGVVFLCLLSAC 332
Query: 296 SHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
SH+G + +G H F AM + ++ C+VDLLG +G L +A + I MP +P I+
Sbjct: 333 SHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDLLGRAGDLEKAVEFIQSMPIQPGKNIY 392
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
GALLGAC H N +LAEL L LD
Sbjct: 393 GALLGACRIHKNMELAELAAEKLFVLD 419
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 142/325 (43%), Gaps = 63/325 (19%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H + +K F +D +A I M+ KCG V+ A+ +F
Sbjct: 411 QVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKR----------------------IF 448
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++ E D+V WN+M++ L+ + E F ++ G S YAT S A + L
Sbjct: 449 DRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLS 508
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +HS++ D FVGS LIDMY KC G A
Sbjct: 509 QGRQVHSQIAREGYMNDAFVGSALIDMYSKC----------------------GDVDAAR 546
Query: 253 LAFELMSRRNMISWMVLISAFSQAG-----VL---------EKPRFFFFFVSLLSGCSHS 298
F++M +N ++W +I ++Q G VL EKP FV++L+ CSHS
Sbjct: 547 WVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPD-GITFVAVLTACSHS 605
Query: 299 GPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G V G F +M + ++ C++D LG +G L EA+ LID+MP K +IW
Sbjct: 606 GLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEV 665
Query: 355 LLGACCSHYNTKLAELVMRNLLQLD 379
LL +C + + LA L LD
Sbjct: 666 LLSSCRVYADVSLARRAAEELFHLD 690
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 42/166 (25%)
Query: 72 LHLHGLVKKFYFVSDES-IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF------- 123
+H H L + +SD++ ++ I+ + KC A+D + F +M ++ W
Sbjct: 27 IHAHMLRSR---LSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83
Query: 124 --GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ ++F +MPER++VSWNT+IS LTR+G
Sbjct: 84 ASELEDAHVLFAEMPERNIVSWNTLISALTRNG--------------------------- 116
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
A ++ D+E G H + + +++VG+ L+ MY KC C G
Sbjct: 117 --ACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIG 160
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 128/345 (37%), Gaps = 85/345 (24%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L K F SD + S +DM+ K G +D AE ++F
Sbjct: 244 QVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAE----------------------MIF 281
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
MPE +VSWN MI+ + + + + HGF + Y A D+E
Sbjct: 282 VNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIE 341
Query: 193 WG---------PHLHS--------------------------RVVHMEPSLDVFVGSGLI 217
G P L S R VH + + + S L
Sbjct: 342 AGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLA 401
Query: 218 DMYLKCGCNGI---------ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
M L G + + I + L+ MY++ G + A F+ ++ +++ W
Sbjct: 402 GMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNS 461
Query: 269 LISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+++ S L+K F FF + ++LS C+ +++G+ + +A+
Sbjct: 462 MMAGLS-LNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIARE 520
Query: 315 TY-TCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
Y FV ++D+ G + A+ + D M K T V W ++
Sbjct: 521 GYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNT-VTWNEMI 564
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 126/295 (42%), Gaps = 46/295 (15%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVR---CLCVGNIKMALHLHGLVKKFYFVSDESIA 90
++D + +F ++ R + ++NT+I+ R C + +++ HG+ K ++ +
Sbjct: 87 LEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYVG 146
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150
+ + M+ KC + A AF +PE + VS+ M+ L
Sbjct: 147 NALLGMYAKCRCIGDAIQAF----------------------GDVPEPNEVSFTAMMGGL 184
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
E F + + + S+ ++ + E+G H + V+ S DV
Sbjct: 185 ADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVL----SSDV 240
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
G + + +K +G ES + + +L+ MYA+ G+ A++ F M +++SW V+I
Sbjct: 241 H-GQQVHCLTIK---HGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMI 296
Query: 271 SAFSQAG-------VLEKPRFFFF------FVSLLSGCSHSGPVTKGKHYFTAMA 312
+ + Q L++ ++ F +V++L C SG + G+ F M+
Sbjct: 297 AGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMS 351
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS-----------IQIGKALVTMY 242
G +H+ ++ S D F+ + LI+ Y KC N I++S I A++ Y
Sbjct: 24 GKLIHAHMLRSRLSDDTFLSNRLIEFYAKC--NAIDASRRLFDQMPKRDIYTWNAILGAY 81
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
+ + A + F M RN++SW LISA ++ G
Sbjct: 82 CKASELEDAHVLFAEMPERNIVSWNTLISALTRNGA 117
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 25/135 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F+Y T+++ C + ++ +H + + +++D + + IDM+ KCG VD A
Sbjct: 492 FSYATVLSC---CAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWV 548
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F ML ++ V+WN MI ++G G E + + ++
Sbjct: 549 FDMMLG----------------------KNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGS 586
Query: 170 GFGLSSMLYATAFSA 184
G + + +A
Sbjct: 587 GEKPDGITFVAVLTA 601
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 165/376 (43%), Gaps = 60/376 (15%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT++ ++ G C + K +HG V K+ F + + + I H CG + A S
Sbjct: 114 FTFSFLLKG---CTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSI 170
Query: 110 FLRMLNPSLFCW-----------KFGIIRLL----------------------------- 129
F + S+ W + G+ R +
Sbjct: 171 FYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENAR 230
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
+F + PE+D+V+WNTMI+ G + L F E+ N G + + SA A +
Sbjct: 231 TLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLG 290
Query: 190 DLEWGPHLHSRVVHM-EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
DL+ G LH + M L V +G+ L+DMY K C IE ++Q+ K + ++
Sbjct: 291 DLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAK--CGSIEIALQVFKKMREKDVTTWNS 348
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLE--KPRFFFFFVSLLSGCSHSGPVTKGKH 306
LAF + + I F++ L+ KP F V ++ CSH+G V +G+
Sbjct: 349 VIGGLAFHGHAEES-------IKLFAEMQALKNIKPNEITF-VGVIVACSHAGNVEEGRR 400
Query: 307 YFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
YF M + + CMVDLLG +GLL EA +LI +M +P +IW LLGAC H
Sbjct: 401 YFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPNAIIWRTLLGACRVH 460
Query: 363 YNTKLAELVMRNLLQL 378
N +L L LL+L
Sbjct: 461 GNVELGRLANERLLKL 476
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 114/283 (40%), Gaps = 31/283 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++ E D+ WNTM+ ++ + + + ++ N G ++
Sbjct: 69 VFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKG---CTR 125
Query: 191 LEW---GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKAL 238
LEW G +H +V+ ++ FV + LI + CG I E S+ AL
Sbjct: 126 LEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSAL 185
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFV 289
YA G A F+ M ++++SW V+I+ + + G +E R F +
Sbjct: 186 TAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWN 245
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE---AKKL---IDEM 343
++++G G + F M V M+ LL LG+ +KL I EM
Sbjct: 246 TMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEM 305
Query: 344 PSKPTCVIWG-ALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
V+ G AL+ + ++A V + + + DV + S
Sbjct: 306 TRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNS 348
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 186/417 (44%), Gaps = 72/417 (17%)
Query: 7 LKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYLFTYNTM 55
L + + ++IH+ +I T + ++F+ L+D D ++F ++ + +YN +
Sbjct: 223 LDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVI 282
Query: 56 INGGVRCLCVGNIKMALHLHGLV-------KKFYFVSDESIAKSSID------MHVKCGA 102
I+G G K A L + K+F F + SIA +++D +H +
Sbjct: 283 ISGYA---WDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQT-I 338
Query: 103 VDYAESAFL---RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
V A+S L +++ C KF ++ F + R V W MIS + GF E
Sbjct: 339 VTTADSEILVGNSLVDMYAKCGKFEEAEMI--FTNLTHRSAVPWTAMISAYVQKGFYEEG 396
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
L F ++ +A+ A AS+ L G LHS ++ +VF GS L+D+
Sbjct: 397 LQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDV 456
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KCG I+ ++Q F+ M RN++SW +ISA++Q G
Sbjct: 457 YAKCG--SIKDAVQ--------------------TFQEMPDRNIVSWNAMISAYAQNGEA 494
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVC 322
E F F+ +LS CSHSG V +G +F +M + ++
Sbjct: 495 EATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYAS 554
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+VD+L SG EA+KL+ EMP P ++W ++L AC H N +LA L ++
Sbjct: 555 VVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNME 611
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 69/322 (21%)
Query: 58 GGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115
V C +G +I + +H V K FV + ++ + +D + K +V
Sbjct: 214 AAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSV------------ 261
Query: 116 PSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILT---RHGFGFETLCTFIELWNHGFG 172
I +F +MPE+D VS+N +IS +H + F+ F EL F
Sbjct: 262 ----------IDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDL---FRELQFTAFD 308
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+AT S ++ D E G +H++ + +S I
Sbjct: 309 RKQFPFATMLSIASNTLDWEMGRQIHAQTI----------------------VTTADSEI 346
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+G +LV MYA+ G ++A++ F ++ R+ + W +ISA+ Q G E+ F
Sbjct: 347 LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA 406
Query: 287 -------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEA 336
F SLL + ++ GK H F + F + ++D+ G + +A
Sbjct: 407 SVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDA 466
Query: 337 KKLIDEMPSKPTCVIWGALLGA 358
+ EMP + V W A++ A
Sbjct: 467 VQTFQEMPDR-NIVSWNAMISA 487
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 189/449 (42%), Gaps = 94/449 (20%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL--QLI---------DDDYRVFCDIGPRYLF 50
KA LK L + +H +I L S +F+ LI D +RVF ++ + +
Sbjct: 181 KAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVV 240
Query: 51 TYNTMIN----GGV-------------RCLCVGNIKMALHLHGLVKKFY----------- 82
++N MIN GG+ + + I M L KK
Sbjct: 241 SWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYI 300
Query: 83 ----FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRLL 129
F + + +DM+VKCG ++ A+ F +M + W K G
Sbjct: 301 ENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAH 360
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAFSARASV 188
+F MP + +WN +IS ++G L F E+ + + A A A +
Sbjct: 361 CIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQL 420
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+++G +H + + +L+ + + L+DMY KCG +
Sbjct: 421 GAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCG----------------------NL 458
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG-----------VLE---KPRFFFFFVSLLSG 294
KA F + R+++ W +I A + G +LE KP F ++L
Sbjct: 459 NKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTF-TNILCA 517
Query: 295 CSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+H+G V +G+ F M ++VC+VD+ G +GLL +A I++MP PT
Sbjct: 518 CNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAA 577
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WGALLGAC H N +LAEL +NLL+L+
Sbjct: 578 VWGALLGACSRHGNVELAELAYQNLLELE 606
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 134/337 (39%), Gaps = 55/337 (16%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LHG+V K SD I S I+ + GA D A +F
Sbjct: 195 LHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHR----------------------VFT 232
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
MP +D+VSWN MI+ G + L F E+ + + + SA A DLE+
Sbjct: 233 NMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEF 292
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGI-ESSIQIGKALVTMYAE 244
G + S + + + + + + ++DMY+KCGC N + E I ++ +A+
Sbjct: 293 GRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAK 352
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-----------------F 287
G+ +A F+ M + +W LISA+ Q G KPR
Sbjct: 353 LGNYDEAHCIFDAMPHKWTAAWNALISAYEQNG---KPRVALSLFHEMQLSKDAKPDEVT 409
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMP 344
+ L + G + G H + C+ ++D+ G L +A ++ +
Sbjct: 410 LICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVE 469
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
K +W A++GA + K A + ++L+ +K
Sbjct: 470 RKDV-YVWSAMIGALAMYGQGKAALDLFSSMLEAYIK 505
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 110/280 (39%), Gaps = 61/280 (21%)
Query: 112 RMLNPSLFCWKFGIIRLLI---------------MFQKMPERDLVSWNTMISILTRHGFG 156
ML S FC + +LL +F ++P+ +L WNT+I
Sbjct: 94 HMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDP 153
Query: 157 FETLCTFIELWNHGFGLSSML-YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
++ F+ + + + + F A + + L G LH V+ S D+F+ +
Sbjct: 154 TQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNS 213
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA---FELMSRRNMISWMVLISA 272
LI+ Y GS+ DLA F M ++++SW +I+A
Sbjct: 214 LINFY-------------------------GSSGAPDLAHRVFTNMPGKDVVSWNAMINA 248
Query: 273 FSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY 319
F+ G+ +K F VS+LS C+ + G+ + + +T +
Sbjct: 249 FALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEH 308
Query: 320 FV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ M+D+ G + +AK L ++M S+ V W +L
Sbjct: 309 LILNNAMLDMYVKCGCINDAKDLFNKM-SEKDIVSWTTML 347
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 149/331 (45%), Gaps = 68/331 (20%)
Query: 75 HGLVKKFYFVSDESIAKSS------IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
H VKK V D K+S ID +++ G VD A
Sbjct: 111 HSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNA---------------------- 148
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+ MF KMPERDL+SW MI+ + GF E L F E+ G + A +A ++
Sbjct: 149 VKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNL 208
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L +G +H V+ + +V V + LID+Y +CGC +E + ++
Sbjct: 209 GALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGC--VEFAREV-------------- 252
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
F+ M +R ++SW +I F+ G + +F F L+ C
Sbjct: 253 ------FDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTAC 306
Query: 296 SHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SH G V +G YF M + ++ C+VDL +G L EA K++ MP KP V+
Sbjct: 307 SHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVV 366
Query: 352 WGALLGACCSH-YNTKLAELVMRNLLQLDVK 381
G+LL AC +H NT LAE +M++L ++VK
Sbjct: 367 IGSLLAACRTHGNNTVLAERLMKHLSDVNVK 397
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 59/226 (26%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVR-------------------------------- 61
+D+ ++F + R L ++ MING V+
Sbjct: 145 VDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNA 204
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + L +H V F ++ ++ S ID++ +CG V++A
Sbjct: 205 CTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFARE------------- 251
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM +R +VSWN++I +G E+L F ++ GF ++ + A
Sbjct: 252 ---------VFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGA 302
Query: 182 FSARASVYDLEWGP---HLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
+A + V +E G R + P ++ + L+D+Y + G
Sbjct: 303 LTACSHVGLVEEGLRYFQTMKRDHRISPRIEHY--GCLVDLYSRAG 346
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 106/266 (39%), Gaps = 29/266 (10%)
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS--ARASVYDLEWGPHL 197
+VSW + I++LTR+G E F ++ G + + + S S G L
Sbjct: 25 IVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGDLL 84
Query: 198 HSRVVHM-EPSLDVFVGSGLIDMYLKCGC--------NGIESSIQIG-KALVTMYAEGGS 247
H + V VG+ ++ MY K + +E + ++ Y G
Sbjct: 85 HGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQ 144
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294
A F+ M R++ISW +I+ F + G E+ +F ++ L+
Sbjct: 145 VDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNA 204
Query: 295 CSHSGPVTKG--KHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C++ G ++ G H + F ++DL G + A+++ D+M K T V
Sbjct: 205 CTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKM-EKRTVVS 263
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQ 377
W +++ ++ N + + R + +
Sbjct: 264 WNSVIVGFAANGNAHESLVYFRKMQE 289
>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
Length = 1027
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 150/347 (43%), Gaps = 62/347 (17%)
Query: 51 TYNTMINGGVRCLCVGNI-KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
Y T+++ CL G++ + LH + F SDE + S I M+ KCG + ++
Sbjct: 552 NYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQD- 610
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F + R++++WN M++ HG G E L ++ +
Sbjct: 611 ---------------------LFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSF 649
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G L ++ SA A + LE G LH V + D F+ + DMY KCG
Sbjct: 650 GVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCG----- 704
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
+IG+ + + R++ SW +LISA + G E+ F
Sbjct: 705 ---EIGEVVKMLPPS--------------VNRSLPSWNILISALGRHGYFEEVCATFHEM 747
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
FVSLL+ CSH G V KG Y+ +A+ + +C++DLLG SG
Sbjct: 748 LEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGR 807
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EA+ I +MP KP ++W +LL +C H N NL +L+
Sbjct: 808 LAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLE 854
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 39/244 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M ERD +SWN++ + ++G E+ F + ++S +T S V
Sbjct: 307 IFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDH 366
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+WG +H VV M G +S + + L+ MYA G + +
Sbjct: 367 QKWGRGIHGLVVKM----------------------GFDSVVCVCNTLLRMYAGAGRSVE 404
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-------------VLEKPRFFFFFVSLLSGCSH 297
A+L F+ M +++ISW L+++F G K + F S L+ C
Sbjct: 405 ANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFT 464
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
KG+ H ++ Y +V + G G + E+++++ +MP + V W A
Sbjct: 465 PDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRR-DVVAWNA 523
Query: 355 LLGA 358
L+G
Sbjct: 524 LIGG 527
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/399 (19%), Positives = 166/399 (41%), Gaps = 73/399 (18%)
Query: 8 KSLPIARKIHAQLISTCLISSIFLQ---------LIDDDYR--VFCDIGPRYLFTYNTMI 56
K + R+I Q++ + L S + ++ + + DY +F + R ++N++
Sbjct: 264 KDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIA 323
Query: 57 NGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE------SAF 110
+ G+I+ + + L+++F+ DE + + + G VD+ +
Sbjct: 324 AAYAQN---GHIEESFRIFSLMRRFH---DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLV 377
Query: 111 LRMLNPSLFCWKFGIIRLL----------IMFQKMPERDLVSWNTMISILTRHGFGFETL 160
++M S+ C ++R+ ++F++MP +DL+SWN++++ G + L
Sbjct: 378 VKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDAL 437
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
+ + G ++ + + +A +A + E G LH VV
Sbjct: 438 GLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV------------------ 479
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+G+ + IG ALV+MY + G ++ M RR++++W LI +++ +
Sbjct: 480 ----VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 535
Query: 281 KP-------------RFFFFFVSLLSGCSHSGP-VTKGK--HYFTAMAKFTYTCYFV-CM 323
K + VS+LS C G + +GK H + A F + +
Sbjct: 536 KALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSL 595
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ + G L ++ L + + ++ + W A+L A H
Sbjct: 596 ITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHH 633
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF--------- 285
L+ MY + G + A F++M RN +SW ++S + G+ LE FF
Sbjct: 111 NTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIK 170
Query: 286 ---FFFVSLLSGCSHSGPVTKGK---HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKK 338
F SL++ C SG + + H F A + Y ++ L G+ GL+ ++K
Sbjct: 171 PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRK 230
Query: 339 LIDEMPSKPTCVIWGALL 356
+ +EMP + V W +L+
Sbjct: 231 VFEEMPDR-NVVSWTSLM 247
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 38/241 (15%)
Query: 122 KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
KFG ++ +F MP R+ VSWNTM+S + R G E + F ++ + G SS + A+
Sbjct: 119 KFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIAS 178
Query: 181 AFSA--RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
+A R+ E G +H V +G+ S + + A+
Sbjct: 179 LVTACGRSGSMFRE-GVQVHGFVAK----------------------SGLLSDVYVSTAI 215
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298
+ +Y G + FE M RN++SW L+ +S G E+ + SL G
Sbjct: 216 LHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESL--GRQII 273
Query: 299 GPVTK-GKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
G V K G A+ ++ +LG G + A + D+M + T + W ++
Sbjct: 274 GQVVKSGLESKLAVEN--------SLISMLGSMGNVDYANYIFDQMSERDT-ISWNSIAA 324
Query: 358 A 358
A
Sbjct: 325 A 325
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 103/419 (24%), Positives = 182/419 (43%), Gaps = 73/419 (17%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFT 51
ACG + + + R +H+ L L + L+ +VF +I R +
Sbjct: 138 ACGKREEIGVGRSVHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVS 197
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
+N+MI+G G K A+ L +++ F DE ++ + M C + +
Sbjct: 198 WNSMISGYSEA---GRAKDAMDLFRKMEEEGFEPDE---RTLVSMLGACAHLGDLTTG-- 249
Query: 112 RMLNPSLFCWKFGII-----RLLIM-------------FQKMPERDLVSWNTMISILTRH 153
R+L K G+ +L+ M F +M ++D V+WN MI++ +++
Sbjct: 250 RLLEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQN 309
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E F E+ G + +T SA SV LE G + + + +++V
Sbjct: 310 GKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVA 369
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+GL+DMY KCG IE ++++ FE M +N +W +I+A+
Sbjct: 370 TGLVDMYGKCG--HIEEALRV--------------------FEAMPVKNEATWNAMITAY 407
Query: 274 SQAGVLEKPRFFF----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
+ G ++ F F+ +LS C H+G V +G YF M+ +
Sbjct: 408 AHQGHAKEALLLFDQMPVPPSDVTFIGVLSACVHAGLVDQGCRYFHEMSSLFGLVPKIEH 467
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ ++DLL +GLL EA + ++ P KP ++ A+LGAC + + E MR L+++
Sbjct: 468 YTNIIDLLSRAGLLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEM 526
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 40/237 (16%)
Query: 137 ERDLVSWNTMISILTRHGFGFE-TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
E + S+N MI LT E L + + G + Y F A ++ G
Sbjct: 90 EPNHYSFNYMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGR 149
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+HS + + D + LI MY KCG G + F
Sbjct: 150 SVHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKV----------------------F 187
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVT 302
+ ++ R +SW +IS +S+AG + F VS+L C+H G +T
Sbjct: 188 DEITDRVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLT 247
Query: 303 KGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G+ K + + ++ + G G L A+++ ++M K V W A++
Sbjct: 248 TGRLLEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDR-VAWNAMI 303
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 167/351 (47%), Gaps = 51/351 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM-LNPSLFC 120
C + ++++ LH LV++ + E++ + IDM+ KCG +A+ F + P
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQS 308
Query: 121 W--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W K G + + +F +M RD++++N+M++ G E L F+ + H
Sbjct: 309 WNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDL 368
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ + +A AS+ L+ G LH+ I+ L +E+
Sbjct: 369 RVDNFTVVNLLTACASLGALQQGRALHA----------------CIEQRL------VEAD 406
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---- 287
I +G AL+ MY + G +A + F+ M +R++ +W +I+ + G+ + F+
Sbjct: 407 IYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRC 466
Query: 288 ---------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY-----FVCMVDLLGLSGLL 333
++++L+ CSHS + +G+ YF M + Y + + CM+DLLG SGLL
Sbjct: 467 DGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEM-RILYNIHPQIEHYGCMIDLLGRSGLL 525
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
EA L+ MP +P VIW ++L AC H + LA+ +LL+L+ G
Sbjct: 526 DEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDG 576
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 36/251 (14%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII-RLLIMFQKMPERD 139
++ S I M+++ G A AF + W K G++ ++ + P RD
Sbjct: 144 VSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
++SW ++I+ +R E + F + +HG + SA A + DLE G LH
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHL 263
Query: 200 RVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESSI----------QIGKALVTMYAEGGS 247
V M S ++ V LIDMY KCG G + Q A++ Y + G
Sbjct: 264 LVEEKGMPTSENLVV--ALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH 321
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
A F+ M R++I++ +++ + +G L + F V+LL+
Sbjct: 322 VDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTA 381
Query: 295 CSHSGPVTKGK 305
C+ G + +G+
Sbjct: 382 CASLGALQQGR 392
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 32/175 (18%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T++N C +G ++ LH +++ +D + + +DM++KCG VD A
Sbjct: 374 TVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT------ 427
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
I+FQ+M +RD+ +W MI+ L +G G L F ++ GF
Sbjct: 428 ----------------IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQP 471
Query: 174 SSMLYATAFSARASVYDLEWGP----------HLHSRVVHMEPSLDVFVGSGLID 218
+S+ Y +A + L G ++H ++ H +D+ SGL+D
Sbjct: 472 NSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 526
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 81/207 (39%), Gaps = 25/207 (12%)
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIE----SSIQIGKA-----LVTMYAEGGSTQKADLA 254
M PS FV + LI MY++ G I + A L++ A+ G L
Sbjct: 136 MLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLL 195
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
R++ISW LI+A+S+A + F +++LS C+ +
Sbjct: 196 LSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDL 255
Query: 302 TKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G+ + + T V ++D+ G G A+++ D + P W A++
Sbjct: 256 ELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDG 315
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H + +A + + D+ F S
Sbjct: 316 YCKHGHVDVARSLFDEMEVRDIITFNS 342
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 157/362 (43%), Gaps = 74/362 (20%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+ M+N GVR C + + +H L K + D + S +DM+ K
Sbjct: 114 FRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAK 173
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
CG + A +F +MPER++VSW+ MI + G E
Sbjct: 174 CGEIGDARH----------------------LFDEMPERNVVSWSGMIYGYAQLDDGVEA 211
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
L F + ++ +++ +S LE G +H + M FVGS LI +
Sbjct: 212 LTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISL 271
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA--- 276
Y KCG IE + Q+ F+ + RN+ W ++ A +Q
Sbjct: 272 YSKCGV--IEGAYQV--------------------FDEIPTRNLGLWNSMLIACAQHAHT 309
Query: 277 ----GVLE-------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVC 322
G+ E KP F F +S+L CSH+G V KG+ YF+ M + T ++
Sbjct: 310 QRVFGLFEEMGNVGMKPNFIXF-LSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYAS 368
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
+VDLLG +G L EA +I +MP +PT +WGALL C H +T++A V +L++D
Sbjct: 369 LVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSS 428
Query: 383 FG 384
G
Sbjct: 429 SG 430
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 39/254 (15%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F + P++ +W+++IS ++ L F + N G +Y +A A +
Sbjct: 80 LQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFL 139
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+ G +H V DVFVGS L+DMY KCG +IG
Sbjct: 140 RRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCG--------EIG------------- 178
Query: 249 QKADLAFELMSRRNMISWMVLI-------------SAFSQAGVLEKPRFFFFFVSLLSGC 295
A F+ M RN++SW +I + F QA + + F F S++ C
Sbjct: 179 -DARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVC 237
Query: 296 SHSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
S S + GK K ++ + FV ++ L G++ A ++ DE+P++ +W
Sbjct: 238 SSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTR-NLGLW 296
Query: 353 GALLGACCSHYNTK 366
++L AC H +T+
Sbjct: 297 NSMLIACAQHAHTQ 310
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 31/249 (12%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYLF 50
KACG L+ + + +H + T +F+ L+D D +F ++ R +
Sbjct: 134 KACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVV 193
Query: 51 TYNTMING------GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM------HV 98
+++ MI G GV L + K AL V F F S + SS + H
Sbjct: 194 SWSGMIYGYAQLDDGVEALTL--FKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHG 251
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGF 157
C + + S+F+ SL+ K G+I +F ++P R+L WN+M+ +H
Sbjct: 252 LCLKMSFDSSSFVGSALISLYS-KCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQ 310
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS--RVVHMEPSLDVFVGSG 215
F E+ N G + + + + A + +E G S R +EP + + +
Sbjct: 311 RVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHY--AS 368
Query: 216 LIDMYLKCG 224
L+D+ + G
Sbjct: 369 LVDLLGRAG 377
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 161/358 (44%), Gaps = 48/358 (13%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TMI C V ++ + H +K+ + + +DM+VKCG + A F M
Sbjct: 261 TMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNM 320
Query: 114 LNPSLFCW--------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
+L W +FG + + + K+PE+ +V WN +IS + G E L F
Sbjct: 321 AQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFH 380
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
E+ + SA + + L+ G +H + + S+DV +G+ L+DMY KCG
Sbjct: 381 EMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCG 440
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF 284
I ++Q+ FE + +RN ++W +I + G +
Sbjct: 441 --NIARALQV--------------------FEEIPQRNCLTWTAVICGLALHGNAQDALS 478
Query: 285 FF-------------FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLL 327
+F F+ +LS C H G V +G+ YF+ M +KF + ++ CMVDLL
Sbjct: 479 YFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLL 538
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
G +G L EA++L+ MP + GAL AC + N ++ E LL++D + G+
Sbjct: 539 GRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGN 596
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 96/432 (22%), Positives = 160/432 (37%), Gaps = 94/432 (21%)
Query: 8 KSLPIARKIHAQLISTCLISSIFL-----------QLIDDDY--RVFCDIGPRYLFTYNT 54
KSL ++I AQ++ST LI + F + + DY R+ I +F++N
Sbjct: 68 KSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNA 127
Query: 55 MINGGV-------------RCLCVGNIKMALHLH--------------------GLVKKF 81
I G V R L G +K H + G V KF
Sbjct: 128 AIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKF 187
Query: 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV 141
F D + +SI M + CG + A +F K RDLV
Sbjct: 188 GFECDIFVHNASITMLLSCGELSVAYD----------------------VFNKSRVRDLV 225
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
+WN+MI+ + G E + + E+ + + S+ + V DL G H +
Sbjct: 226 TWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYI 285
Query: 202 VHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKAD 252
+ + + L+DMY+KCG N + ++ +V YA G A
Sbjct: 286 KEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAR 345
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSG 299
+ ++++ W +IS QA ++ F V+ LS CS G
Sbjct: 346 EILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLG 405
Query: 300 PVTKG--KHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ G H++ K + +VD+ G + A ++ +E+P + C+ W A++
Sbjct: 406 ALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQR-NCLTWTAVI 464
Query: 357 GACCSHYNTKLA 368
H N + A
Sbjct: 465 CGLALHGNAQDA 476
>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1064
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/439 (23%), Positives = 183/439 (41%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLIST-----CLISSIFLQL------IDDDYRVFCDIGPRYL 49
+K C L L + +IH+Q+I T + S+ + + +D + + + +
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 556
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++ TMI G G+R C + +K +H
Sbjct: 557 VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 616
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
F SD + + ++ +CG + E ++L F++
Sbjct: 617 ACVSGFSSDLPFQNALVTLYSRCGKI---EESYL-------------------AFEQTEA 654
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D ++WN ++S + G E L F+ + G ++ + +A A + +++ G +
Sbjct: 655 GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV 714
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ + G +S ++ AL++MYA+ GS A+ F
Sbjct: 715 HAVITK----------------------TGYDSETEVCNALISMYAKCGSISDAEKQFLE 752
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+S +N +SW +I+A+S+ G + F V +LS CSH G V KG
Sbjct: 753 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 812
Query: 305 KHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
YF +M +++ + ++VC+VD+L +GLL AK+ I EMP KP ++W LL AC
Sbjct: 813 IAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACV 872
Query: 361 SHYNTKLAELVMRNLLQLD 379
H N ++ E +LL+L+
Sbjct: 873 VHKNMEIGEFAAHHLLELE 891
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 154/364 (42%), Gaps = 70/364 (19%)
Query: 20 LISTCLISSIFLQLIDDDYRVFC-----DIGPRYLFTYNTMINGGVRCLCVGNIKMALHL 74
L + L++ L + + +R+F +I P +TY +++ C+ +G++++ +
Sbjct: 457 LWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ-YTYPSILK---TCIRLGDLELGEQI 512
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H + K F + + IDM+ K G +D A W +LI F
Sbjct: 513 HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA--------------WD-----ILIRFAG 553
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+D+VSW TMI+ T++ F + L TF ++ + G + A SA A + L+ G
Sbjct: 554 ---KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG 610
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H++ +G S + ALVT+Y+ G +++ LA
Sbjct: 611 QQIHAQAC----------------------VSGFSSDLPFQNALVTLYSRCGKIEESYLA 648
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPV 301
FE + I+W L+S F Q+G E+ R F F F S + S + +
Sbjct: 649 FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 708
Query: 302 TKGKHYFTAMAKFTYTCYF-VC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+GK + K Y VC ++ + G + +A+K E+ +K V W A++ A
Sbjct: 709 KQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE-VSWNAIINA 767
Query: 359 CCSH 362
H
Sbjct: 768 YSKH 771
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 154/391 (39%), Gaps = 67/391 (17%)
Query: 9 SLPIARKIHAQLI------STCLISSIF-LQLIDDD----YRVFCDIGPRYLFTYNTMIN 57
SL RK+H+Q++ + CL +F L D ++VF ++ R +FT+N MI
Sbjct: 100 SLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIK 159
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV--DYAESAFLRML- 114
+G + L + + + V+ S + + G+V D E R+L
Sbjct: 160 ELASRNLIGEV-FGLFVRMVSEN---VTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 215
Query: 115 ----------NPSLFCW-KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
NP + + + G + L +F + +D SW MIS L+++ E +
Sbjct: 216 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRL 275
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F +++ G + +++ SA + LE G LH V+ + S D +V
Sbjct: 276 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV---------- 325
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
CN ALV++Y G+ A+ F MS+R+ +++ LI+ SQ G EK
Sbjct: 326 --CN----------ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 373
Query: 283 RFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL 329
F SL+ CS G + +G+ K + LL L
Sbjct: 374 MELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 433
Query: 330 SGLLGEAKKLIDEM--PSKPTCVIWGALLGA 358
+ + +D V+W +L A
Sbjct: 434 YAKCADIETALDYFLETEVENVVLWNVMLVA 464
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 122/328 (37%), Gaps = 95/328 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL------------QLIDDDYRVFCDIGPRY 48
+ AC ++SL I ++H ++ S ++ LI ++ +F ++ R
Sbjct: 295 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH-IFSNMSQRD 353
Query: 49 LFTYNTMING--------------------------------GVRCLCVGNIKMALHLHG 76
TYNT+ING V C G + LH
Sbjct: 354 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K F S+ I + ++++ KC ++ A FL ++ W +M
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN-------VM----- 461
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
LV++ + + R+ F E+ + + S+L + DLE G
Sbjct: 462 ---LVAYGLLDDL--RNSFRIFRQMQIEEIVPNQYTYPSILKTC-----IRLGDLELGEQ 511
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+HS+++ L+ +V S LIDMY K G K D A++
Sbjct: 512 IHSQIIKTNFQLNAYVCSVLIDMYAKLG-------------------------KLDTAWD 546
Query: 257 LMSR---RNMISWMVLISAFSQAGVLEK 281
++ R ++++SW +I+ ++Q +K
Sbjct: 547 ILIRFAGKDVVSWTTMIAGYTQYNFDDK 574
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/364 (20%), Positives = 140/364 (38%), Gaps = 70/364 (19%)
Query: 39 RVFCD-----IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
R+FCD I P + ++++++ C + ++++ LHGLV K F SD + +
Sbjct: 274 RLFCDMYVLGIMPT-PYAFSSVLSA---CKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 329
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+ ++ G + AE +F M +RD V++NT+I+ L++
Sbjct: 330 VSLYFHLGNLISAEH----------------------IFSNMSQRDAVTYNTLINGLSQC 367
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G+G + + F + G S A+ A ++ L G LH+ +
Sbjct: 368 GYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKL--------- 418
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA- 272
G S+ +I AL+ +YA+ + A F N++ W V++ A
Sbjct: 419 -------------GFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 465
Query: 273 ------------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY- 319
F Q + E + + S+L C G + G+ + + K +
Sbjct: 466 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525
Query: 320 FVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+VC ++D+ G L A ++ K V W ++ + A R +L
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDV-VSWTTMIAGYTQYNFDDKALTTFRQMLD 584
Query: 378 LDVK 381
++
Sbjct: 585 RGIR 588
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/263 (19%), Positives = 94/263 (35%), Gaps = 45/263 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA-RASVY 189
+F +MPER + +WN MI L E F+ + + + ++ A R
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ +H+R+++ G+ S + L+ +Y+ G
Sbjct: 202 AFDVVEQIHARILYQ----------------------GLRDSTVVCNPLIDLYSRNGFVD 239
Query: 250 KADLAFELMSRRNMISWMVLISAFSQA----------------GVLEKPRFFFFFVSLLS 293
A F+ + ++ SW+ +IS S+ G++ P + F S+LS
Sbjct: 240 LARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTP---YAFSSVLS 296
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTC-YFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C + G+ + K ++ +VC +V L G L A+ + M +
Sbjct: 297 ACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT 356
Query: 351 IWGALLGACCSHYNTKLAELVMR 373
+ G Y K EL R
Sbjct: 357 YNTLINGLSQCGYGEKAMELFKR 379
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 142/325 (43%), Gaps = 63/325 (19%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H + +K F +D +A I M+ KCG V+ A+ +F
Sbjct: 440 QVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKR----------------------IF 477
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++ E D+V WN+M++ L+ + E F ++ G S YAT S A + L
Sbjct: 478 DRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLS 537
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +HS++ D FVGS LIDMY KC G A
Sbjct: 538 QGRQVHSQIAREGYMNDAFVGSALIDMYSKC----------------------GDVDAAR 575
Query: 253 LAFELMSRRNMISWMVLISAFSQAG-----VL---------EKPRFFFFFVSLLSGCSHS 298
F++M +N ++W +I ++Q G VL EKP FV++L+ CSHS
Sbjct: 576 WVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPD-GITFVAVLTACSHS 634
Query: 299 GPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G V G F +M + ++ C++D LG +G L EA+ LID+MP K +IW
Sbjct: 635 GLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEV 694
Query: 355 LLGACCSHYNTKLAELVMRNLLQLD 379
LL +C + + LA L LD
Sbjct: 695 LLSSCRVYADVSLARRAAEELFHLD 719
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 72 LHLHGLVKKFYFVSDES-IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF------- 123
+H H L + +SD++ ++ I+ + KC A+D + F +M ++ W
Sbjct: 27 IHAHMLRSR---LSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83
Query: 124 --GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ ++F +MPER++VSWNT+IS LTR+GF + L + + GF + A+
Sbjct: 84 ASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASV 143
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
SA ++ D+E G H + + +++VG+ L+ MY KC C G
Sbjct: 144 LSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIG 189
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 128/345 (37%), Gaps = 85/345 (24%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L K F SD + S +DM+ K G +D AE ++F
Sbjct: 273 QVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAE----------------------MIF 310
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
MPE +VSWN MI+ + + + + HGF + Y A D+E
Sbjct: 311 VNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIE 370
Query: 193 WG---------PHLHS--------------------------RVVHMEPSLDVFVGSGLI 217
G P L S R VH + + + S L
Sbjct: 371 AGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLA 430
Query: 218 DMYLKCGCNGI---------ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
M L G + + I + L+ MY++ G + A F+ ++ +++ W
Sbjct: 431 GMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNS 490
Query: 269 LISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+++ S L+K F FF + ++LS C+ +++G+ + +A+
Sbjct: 491 MMAGLS-LNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIARE 549
Query: 315 TY-TCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
Y FV ++D+ G + A+ + D M K T V W ++
Sbjct: 550 GYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNT-VTWNEMI 593
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 34/217 (15%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS-----------IQIGKALVTMY 242
G +H+ ++ S D F+ + LI+ Y KC N I++S I A++ Y
Sbjct: 24 GKLIHAHMLRSRLSDDTFLSNRLIEFYAKC--NAIDASRRLFDQMPKRDIYTWNAILGAY 81
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FV 289
+ + A + F M RN++SW LISA ++ G +K ++
Sbjct: 82 CKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLA 141
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGL---LGEAKKLIDEMPSK 346
S+LS C V G+ K LLG+ +G+A + ++P +
Sbjct: 142 SVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVP-E 200
Query: 347 PTCVIWGALLG--ACCSHYNT--KLAELVMRNLLQLD 379
P V + A++G A N +L L++RN + +D
Sbjct: 201 PNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVD 237
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 25/135 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F+Y T+++ C + ++ +H + + +++D + + IDM+ KCG VD A
Sbjct: 521 FSYATVLSC---CAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWV 577
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F ML ++ V+WN MI ++G G E + + ++
Sbjct: 578 FDMMLG----------------------KNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGS 615
Query: 170 GFGLSSMLYATAFSA 184
G + + +A
Sbjct: 616 GEKPDGITFVAVLTA 630
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 164/372 (44%), Gaps = 68/372 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGL---VKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
FT++ ++ C +G++ + H ++ F FV + + IDM+VKCG++ A
Sbjct: 151 FTFSALLKA---CGSMGDLNLGRQFHAQTFRLRGFCFVY---VGNTMIDMYVKCGSIVCA 204
Query: 107 ESAFLRMLNPSLFCW--------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGF 157
F M + W + G + +F+ +P +D+V+W M++ ++
Sbjct: 205 RKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQ 264
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM------EPSLDVF 211
E L F + G + A SA A + ++ R V + PS V
Sbjct: 265 EALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA----DRAVQIAQKSGYSPSDHVV 320
Query: 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271
+GS LIDMY KCG +E ++ + F M+ +N+ S+ +I
Sbjct: 321 IGSALIDMYSKCG--NVEEAVNV--------------------FVSMNNKNVFSYSSMIL 358
Query: 272 AFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTKGKHYFTAMAKF--- 314
+ G ++ F FV L+ CSHSG V +G+ F +M +
Sbjct: 359 GLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGV 418
Query: 315 -TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
++ CMVDLLG +G L EA +LI M +P +WGALLGAC H N +AE+
Sbjct: 419 EPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAE 478
Query: 374 NLLQLDVKVFGS 385
+L +L+ + G+
Sbjct: 479 HLFELEPDIIGN 490
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R+ W +I T G E + + + S ++ A S+ DL G
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQF 172
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEGGST 248
H++ + V+VG+ +IDMY+KCG E + L+ YA G+
Sbjct: 173 HAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNM 232
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+ A FE + ++M++W +++ F+Q ++ +F
Sbjct: 233 ESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 270
>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 937
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 150/347 (43%), Gaps = 62/347 (17%)
Query: 51 TYNTMINGGVRCLCVGNI-KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
Y T+++ CL G++ + LH + F SDE + S I M+ KCG + ++
Sbjct: 462 NYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQD- 520
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F + R++++WN M++ HG G E L ++ +
Sbjct: 521 ---------------------LFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSF 559
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G L ++ SA A + LE G LH V + D F+ + DMY KCG
Sbjct: 560 GVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCG----- 614
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
+IG+ + + R++ SW +LISA + G E+ F
Sbjct: 615 ---EIGEVVKMLPPS--------------VNRSLPSWNILISALGRHGYFEEVCATFHEM 657
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
FVSLL+ CSH G V KG Y+ +A+ + +C++DLLG SG
Sbjct: 658 LEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGR 717
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EA+ I +MP KP ++W +LL +C H N NL +L+
Sbjct: 718 LAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLE 764
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/406 (19%), Positives = 171/406 (42%), Gaps = 73/406 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ---------LIDDDYR--VFCDIGPRYL 49
+ +CG LK + R+I Q++ + L S + ++ + + DY +F + R
Sbjct: 167 ISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDT 226
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE-- 107
++N++ + G+I+ + + L+++F+ DE + + + G VD+ +
Sbjct: 227 ISWNSIAAAYAQN---GHIEESFRIFSLMRRFH---DEVNSTTVSTLLSVLGHVDHQKWG 280
Query: 108 ----SAFLRMLNPSLFCWKFGIIRLL----------IMFQKMPERDLVSWNTMISILTRH 153
++M S+ C ++R+ ++F++MP +DL+SWN++++
Sbjct: 281 RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVND 340
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G + L + + G ++ + + +A +A + E G LH VV
Sbjct: 341 GRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV----------- 389
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+G+ + IG ALV+MY + G ++ M RR++++W LI +
Sbjct: 390 -----------VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGY 438
Query: 274 SQAGVLEKP-------------RFFFFFVSLLSGCSHSGP-VTKGK--HYFTAMAKFTYT 317
++ +K + VS+LS C G + +GK H + A F
Sbjct: 439 AEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESD 498
Query: 318 CYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ ++ + G L ++ L + + ++ + W A+L A H
Sbjct: 499 EHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHH 543
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 142/357 (39%), Gaps = 69/357 (19%)
Query: 39 RVFCDIGP-RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
R DI P R ++NTM++G VR + L+L G+ + F + D I SS +
Sbjct: 12 RHLFDIMPVRNEVSWNTMMSGIVR--------VGLYLEGM-EFFRKMCDLGIKPSSFVIA 62
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM--------------------FQKMPE 137
A + S F + F K G++ + + F++MP+
Sbjct: 63 SLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPD 122
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R++VSW +++ + G E + + + G G + + S+ + D G +
Sbjct: 123 RNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQI 182
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
+VV +G+ES + + +L++M G+ A+ F+
Sbjct: 183 IGQVVK----------------------SGLESKLAVENSLISMLGSMGNVDYANYIFDQ 220
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFFFV-------------SLLSGCSHSGPVTKG 304
MS R+ ISW + +A++Q G +E+ F + +LLS H G
Sbjct: 221 MSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWG 280
Query: 305 KHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+ + K + C ++ + +G EA + +MP+K + W +L+ +
Sbjct: 281 RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMAS 336
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 18/133 (13%)
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FF 287
MY + G + A F++M RN +SW ++S + G+ LE FF F
Sbjct: 1 MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60
Query: 288 FVSLLSGCSHSGPVTKGK---HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEM 343
SL++ C SG + + H F A + Y ++ L G+ GL+ ++K+ +EM
Sbjct: 61 IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120
Query: 344 PSKPTCVIWGALL 356
P + V W +L+
Sbjct: 121 PDR-NVVSWTSLM 132
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 122 KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
KFG ++ +F MP R+ VSWNTM+S + R G E + F ++ + G SS + A+
Sbjct: 4 KFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIAS 63
Query: 181 AFSA--RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
+A R+ E G +H V SGL+ S + + A+
Sbjct: 64 LVTACGRSGSMFRE-GVQVHGFVAK----------SGLL------------SDVYVSTAI 100
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
+ +Y G + FE M RN++SW L+ +S G E+
Sbjct: 101 LHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEE 143
>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
[Solanum demissum]
Length = 819
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 147/351 (41%), Gaps = 64/351 (18%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
R F + TM++ L N+ M H VS+ + + +DM+ KC + A
Sbjct: 343 RKNFPFATMLSVAAIEL---NLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDA 399
Query: 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
+F + R+ V W +ISI + GF E L F E+
Sbjct: 400 NR----------------------IFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEM 437
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
+A+ A A++ + G LHS V+ + VF GS L+DMY CG
Sbjct: 438 NRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCG-- 495
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
++ +I++ F+ M RN++ W LISA+SQ G E F
Sbjct: 496 SMKDAIEV--------------------FKEMPDRNIVCWNALISAYSQNGDAEATFSSF 535
Query: 287 F-------------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGL 329
F+S+L+ CSH G V K YF +M + ++ M+D+L
Sbjct: 536 ADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCR 595
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
SG EA+ LI EMP +P V+W ++L +C H N LA+ L ++D
Sbjct: 596 SGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDA 646
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 118/302 (39%), Gaps = 61/302 (20%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+HGL K +V D +A + +D + K +D A++ +F
Sbjct: 265 QIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKN----------------------LF 302
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+MPE D VS+N +I+ +G ++ F L F + +AT S A +L
Sbjct: 303 DEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLS 362
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G H++ V +V VG+ L+DMY KC + A+
Sbjct: 363 MGRQTHAQAVVTTAVSEVQVGNALVDMYAKC----------------------EKFEDAN 400
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSG 299
F ++ RN + W +IS + Q G E+ F F S L ++
Sbjct: 401 RIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLA 460
Query: 300 PVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V+ GK +++ + +VD+ G + +A ++ EMP + V W AL+
Sbjct: 461 SVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDR-NIVCWNALI 519
Query: 357 GA 358
A
Sbjct: 520 SA 521
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 44/214 (20%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+K L +H + +F F + + S +D + K +D A
Sbjct: 159 LKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQ------------------- 199
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F +MP +D VS+N MI+ T++GF E L F+++ N F S +A
Sbjct: 200 ---LFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVG 256
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
D+ +G +H + D+FV + L+D Y K I + K L
Sbjct: 257 SEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSK------HDYIDLAKNL--------- 301
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
F+ M + +S+ ++I+ ++ G EK
Sbjct: 302 -------FDEMPELDGVSYNIIITGYAWNGQYEK 328
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 90/238 (37%), Gaps = 38/238 (15%)
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+ R +F+ M R+ VSW MI +++ E + E+ G + +AT S
Sbjct: 92 NLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLS 151
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
L+ +HS ++ S + V + L+D Y K C I S +
Sbjct: 152 GFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQL----------- 200
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVS 290
F M ++ +S+ V+I+ +++ G E+ + F F F +
Sbjct: 201 -----------FSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAA 249
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPS 345
+L S V G+ K +Y FV ++D + AK L DEMP
Sbjct: 250 MLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPE 307
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 142/324 (43%), Gaps = 62/324 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSI-DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+HGL + F+ ++SI DM+VKC +D A +F
Sbjct: 232 VHGLSIRRSFIDQSGYLEASIIDMYVKCRLLDNARK----------------------LF 269
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+ ER++V W T+IS + E + F ++ + A + +S+ L
Sbjct: 270 ETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLR 329
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H ++ +D + ID Y +CG +IQ+ + +
Sbjct: 330 HGKSVHGYMIRNGIEMDAVNFTSFIDTYARCG------NIQMARKV-------------- 369
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSG 299
F++M +RN+ISW +I+AF G+ E+ F FVSLLS CSHSG
Sbjct: 370 --FDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHSG 427
Query: 300 PVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
V +G F +M + ++ CMVDLLG +G +GEAK ID MP KP WGAL
Sbjct: 428 NVKEGWKQFESMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGAL 487
Query: 356 LGACCSHYNTKLAELVMRNLLQLD 379
L AC H LA + LL ++
Sbjct: 488 LSACRIHKEVDLAGEIAEKLLSME 511
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 115/292 (39%), Gaps = 63/292 (21%)
Query: 85 SDESIAKSSI-DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143
DE + SS+ + +++ +D+A ++F R+ P CWK R+ SW
Sbjct: 36 QDEVVLGSSLTNAYIQSNRLDFATASFDRI--P---CWK---------------RNRHSW 75
Query: 144 NTMISILTRHGFGF--ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
NT++S ++ + + L + + H G+ S A A + LE G +H
Sbjct: 76 NTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGMLIHGLA 135
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
+ NG++ + +LV MYA+ G+ + A F+ M R
Sbjct: 136 MK----------------------NGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVR 173
Query: 262 NMISWMVLISAFSQ-AGVLEKPRFFFF------------FVSLLSGCSHSGPVTKGK--H 306
N + W VL+ + + + E R F+ + L+ C + +GK H
Sbjct: 174 NSVLWGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVH 233
Query: 307 YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ F ++ ++D+ LL A+KL E + V+W L+
Sbjct: 234 GLSIRRSFIDQSGYLEASIIDMYVKCRLLDNARKLF-ETSVERNVVMWTTLI 284
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 150/336 (44%), Gaps = 62/336 (18%)
Query: 67 NIKMALHLHGLV-KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
+ K + +HG + ++ + + I + +DM+ K G +D A
Sbjct: 389 DYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHK----------------- 431
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN-HGFGLSSMLYATAFSA 184
+F +P +D+VSWNT+IS T++G E + + + L+ + + +A
Sbjct: 432 -----VFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAA 486
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A V L+ G +H ++ LDVFVG+ LID+Y KCG ++ A+ Y
Sbjct: 487 YAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCG--------RLVDAMCLFYQ- 537
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
+ R + + W +IS G EK F F+SL
Sbjct: 538 -------------VPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISL 584
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
LS CSHSG V +GK +F M ++ ++ CMVDLLG +G L A I +MP P
Sbjct: 585 LSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPD 644
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWGALLGAC H N +L + L ++D + G
Sbjct: 645 ASIWGALLGACRIHGNIELGKFASDRLFEVDSENVG 680
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 149/403 (36%), Gaps = 103/403 (25%)
Query: 12 IARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYLFTYNTMINGGV 60
+A+++HA L+ + I S F+ + + F I + ++T+N+MI+ V
Sbjct: 91 LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150
Query: 61 R-------------CLCVGNIKMALH-----------------LHGLVKKFYFVSDESIA 90
R L V + + +H V K F D +A
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVA 210
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150
S I M+ + G V A S +F MP RD+ SWN MIS L
Sbjct: 211 ASLIHMYSRFGFVGIARS----------------------LFDDMPFRDMGSWNAMISGL 248
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
++G + L E+ G + S+ A+ A + D+ +H V+ ++
Sbjct: 249 IQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFEL 308
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
FV + LI+MY K G G QK F+ M R+++SW +I
Sbjct: 309 FVSNALINMYAKFG-------------------NLGDAQK---VFQQMFLRDVVSWNSII 346
Query: 271 SAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGK--HYFTAMAKFT 315
+A+ Q R FFF VSL S + S + H F +
Sbjct: 347 AAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWL 406
Query: 316 YTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ ++D+ G++ A K+ + +P K V W L+
Sbjct: 407 MEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK-DVVSWNTLI 448
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 43/244 (17%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETL-CTFIELWNHGFGLSSMLYATAFSARASVYD 190
F ++ +D+ +WN+MIS R+G E + C + L F + A ++ D
Sbjct: 131 FDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD 190
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H V + DVFV + LI MY + G GI S+
Sbjct: 191 ---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSL------------------ 229
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRF------FFFFVSLLSGCSH 297
F+ M R+M SW +IS Q G VL++ R S+L C+
Sbjct: 230 ----FDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQ 285
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G ++ H + + + ++++ G LG+A+K+ +M + V W +
Sbjct: 286 LGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLR-DVVSWNS 344
Query: 355 LLGA 358
++ A
Sbjct: 345 IIAA 348
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 136/303 (44%), Gaps = 61/303 (20%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+DM+ KCG ++ A ++F KM RDLVSW +MIS +
Sbjct: 860 VDMYAKCGDIEAAR----------------------LVFDKMAVRDLVSWTSMISGYAHN 897
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G+ ETL F + + G + + + A ++ L G HS V+ D+ V
Sbjct: 898 GYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVA 957
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+ ++DMY KCG S+ + + L F+ + ++++ W +I+++
Sbjct: 958 TAIMDMYSKCG------SLDLARCL----------------FDETAGKDLVCWSAMIASY 995
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTY 316
G K F F +LS CSHSG + +GK YF M +
Sbjct: 996 GIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARK 1055
Query: 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
+ CMVDLLG +G L EA LI+ MP +P IWG+LLGAC H N LAE + +L
Sbjct: 1056 LSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLF 1115
Query: 377 QLD 379
LD
Sbjct: 1116 HLD 1118
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 157/349 (44%), Gaps = 52/349 (14%)
Query: 44 IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
I R+ T+++ C N++ +H + F D S++ + IDM++KC
Sbjct: 299 IEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCP 358
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
D A + +FQ++P++D+VSW ++S ++G ++++ F
Sbjct: 359 DEA----------------------VDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVF 396
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
+ + G ++ +A + + + LH VV + +VFVG+ LI++Y KC
Sbjct: 397 RNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKC 456
Query: 224 GCNG---------IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
G G I + I +++ Y G +A F+ M + + +
Sbjct: 457 GSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTV---------- 506
Query: 275 QAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLS 330
+P F +S+LS CSH+G V +G F M + +F MVDLLG
Sbjct: 507 ------RPNNVTF-LSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRI 559
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
G LG+A +I+ MP +WGALLGAC H+N ++ E +NL LD
Sbjct: 560 GQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLD 608
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 134/321 (41%), Gaps = 61/321 (19%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T+++ C + N+K +HGLV + F D + S ++++ K G A +
Sbjct: 208 TLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAAN----- 262
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F KMPE+D++SW+TMI+ + E L F E+ F
Sbjct: 263 -----------------LFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEP 305
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+S+ +A A A +LE G +H V LD V + LIDMY+KC C
Sbjct: 306 NSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSC-------- 357
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+ DL F+ + +++++SW+ L+S ++Q G+ K F
Sbjct: 358 -------------PDEAVDL-FQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDG 403
Query: 287 ------FFVSLLSGCSHSGPVTKG--KHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAK 337
V +L+ S G + H + + F + +++L G LG+A
Sbjct: 404 IQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAV 463
Query: 338 KLIDEMPSKPTCVIWGALLGA 358
KL M + VIW +++ A
Sbjct: 464 KLFKGMIVRDV-VIWSSMIAA 483
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 39/268 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
I+F+ +P WN MI G +L + ++ G + A + A +
Sbjct: 773 IVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLS 832
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
DL+ G +H +V S D+FV + L+DMY KC G +
Sbjct: 833 DLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKC----------------------GDIE 870
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF----------VSLLS---GCS 296
A L F+ M+ R+++SW +IS ++ G + FF VS+LS C
Sbjct: 871 AARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACG 930
Query: 297 HSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ G + KG+ H + F + ++D+ G L A+ L DE K V W
Sbjct: 931 NLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGK-DLVCWS 989
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVK 381
A++ + H + + A + +++ V+
Sbjct: 990 AMIASYGIHGHGRKAIDLFDQMVKAGVR 1017
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 43/248 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTF-IELWNHGFGLSSMLYATAFSARASVY 189
+F + P ++ WN+ + R ETL F + + G + A A A +
Sbjct: 58 VFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLR 117
Query: 190 DLEWGPHLHS-RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
LE G +H + E D+FVGS L+++Y KCG Q+G+AL
Sbjct: 118 MLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCG--------QMGEALKV-------- 161
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSG 294
FE R + + W +++ + Q E+ F VS++S
Sbjct: 162 ------FEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSA 215
Query: 295 CSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C+ V G H +F V +++L +G A L +MP K +
Sbjct: 216 CAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDV-IS 274
Query: 352 WGALLGAC 359
W ++ AC
Sbjct: 275 WSTMI-AC 281
>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 928
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 150/347 (43%), Gaps = 62/347 (17%)
Query: 51 TYNTMINGGVRCLCVGNI-KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
Y T+++ CL G++ + LH + F SDE + S I M+ KCG + ++
Sbjct: 445 NYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQD- 503
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F + R++++WN M++ HG G E L ++ +
Sbjct: 504 ---------------------LFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSF 542
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G L ++ SA A + LE G LH V + D F+ + DMY KCG
Sbjct: 543 GVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCG----- 597
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
+IG+ + + R++ SW +LISA + G E+ F
Sbjct: 598 ---EIGEVVKMLPPS--------------VNRSLPSWNILISALGRHGYFEEVCATFHEM 640
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
FVSLL+ CSH G V KG Y+ +A+ + +C++DLLG SG
Sbjct: 641 LEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGR 700
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EA+ I +MP KP ++W +LL +C H N NL +L+
Sbjct: 701 LAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLE 747
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/406 (19%), Positives = 171/406 (42%), Gaps = 73/406 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ---------LIDDDYR--VFCDIGPRYL 49
+ +CG LK + R+I Q++ + L S + ++ + + DY +F + R
Sbjct: 150 ISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDT 209
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE-- 107
++N++ + G+I+ + + L+++F+ DE + + + G VD+ +
Sbjct: 210 ISWNSIAAAYAQN---GHIEESFRIFSLMRRFH---DEVNSTTVSTLLSVLGHVDHQKWG 263
Query: 108 ----SAFLRMLNPSLFCWKFGIIRLL----------IMFQKMPERDLVSWNTMISILTRH 153
++M S+ C ++R+ ++F++MP +DL+SWN++++
Sbjct: 264 RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVND 323
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G + L + + G ++ + + +A +A + E G LH VV
Sbjct: 324 GRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV----------- 372
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+G+ + IG ALV+MY + G ++ M RR++++W LI +
Sbjct: 373 -----------VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGY 421
Query: 274 SQAGVLEKP-------------RFFFFFVSLLSGCSHSGP-VTKGK--HYFTAMAKFTYT 317
++ +K + VS+LS C G + +GK H + A F
Sbjct: 422 AEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESD 481
Query: 318 CYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ ++ + G L ++ L + + ++ + W A+L A H
Sbjct: 482 EHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHH 526
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 39/244 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++MP+R++VSW +++ + G E + + + G G + + S+ + D
Sbjct: 99 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKD 158
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G + +VV +G+ES + + +L++M G+
Sbjct: 159 ESLGRQIIGQVVK----------------------SGLESKLAVENSLISMLGSMGNVDY 196
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV-------------SLLSGCSH 297
A+ F+ MS R+ ISW + +A++Q G +E+ F + +LLS H
Sbjct: 197 ANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 256
Query: 298 SGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G+ + K + C ++ + +G EA + +MP+K + W +
Sbjct: 257 VDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNS 315
Query: 355 LLGA 358
L+ +
Sbjct: 316 LMAS 319
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 25/149 (16%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASVYDLE 192
MP R+ VSWNTM+S + R G E + F ++ + G SS + A+ +A R+ E
Sbjct: 1 MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H V SGL+ S + + A++ +Y G +
Sbjct: 61 -GVQVHGFVAK----------SGLL------------SDVYVSTAILHLYGVYGLVSCSR 97
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEK 281
FE M RN++SW L+ +S G E+
Sbjct: 98 KVFEEMPDRNVVSWTSLMVGYSDKGEPEE 126
>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01510, mitochondrial; Flags: Precursor
gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 584
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 156/360 (43%), Gaps = 67/360 (18%)
Query: 38 YRVFCDIGPRY-LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
Y+ D+G R FTY ++ + +G+ LH V K+ F +A + M
Sbjct: 97 YKKMRDLGVRPDEFTYPFVVKAISQ---LGDFSCGFALHAHVVKYGFGCLGIVATELVMM 153
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
++K G + AE +F+ M +DLV+WN +++ + G
Sbjct: 154 YMKFGELSSAE----------------------FLFESMQVKDLVAWNAFLAVCVQTGNS 191
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
L F ++ S + SA + LE G ++ R E ++ V +
Sbjct: 192 AIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENAR 251
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+DM+LKCG +T+ A + FE M +RN++SW +I ++
Sbjct: 252 LDMHLKCG----------------------NTEAARVLFEEMKQRNVVSWSTMIVGYAMN 289
Query: 277 GVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFT------YT 317
G + F F+ +LS CSH+G V +GK YF+ M +
Sbjct: 290 GDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRK 349
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
++ CMVDLLG SGLL EA + I +MP +P IWGALLGAC H + L + V L++
Sbjct: 350 EHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVE 409
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 107/307 (34%), Gaps = 67/307 (21%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
K +H +V + F S+ ++ V G + YA F M P +F
Sbjct: 25 KQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFL-------- 76
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
WNT+ R+ FE+L + ++ + G Y A + +
Sbjct: 77 --------------WNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQL 122
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
D G LH+ VV GC GI + LV MY + G
Sbjct: 123 GDFSCGFALHAHVVK-----------------YGFGCLGI-----VATELVMMYMKFGEL 160
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG----VLEKPRFF------------FFFVSLL 292
A+ FE M +++++W ++ Q G LE +F F VS+L
Sbjct: 161 SSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALE---YFNKMCADAVQFDSFTVVSML 217
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
S C G + G+ + K C + +D+ G A+ L +EM +
Sbjct: 218 SACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQR-NV 276
Query: 350 VIWGALL 356
V W ++
Sbjct: 277 VSWSTMI 283
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 157/340 (46%), Gaps = 51/340 (15%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP-SLFCWK---F 123
I+ + V K FV D + + I ++ C V+ A+ F + + + W
Sbjct: 149 IREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIV 208
Query: 124 GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
G +RL +F +MPE+D++SW T+IS ++G + L F EL + +
Sbjct: 209 GFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAI 268
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
+ +A A + LE+G +HS + + +G+ L+DMY KCGC
Sbjct: 269 LVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGC------------ 316
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
++ F+ M ++ SW V+I + G+ ++ F
Sbjct: 317 ----------IDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPV 366
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKL 339
F+ +L+ CS +G V++GKH+F M TY ++ CMVDLL +G + +A ++
Sbjct: 367 NVTFIGVLTACSRAGLVSEGKHFFKLMTD-TYGIEPEMEHYGCMVDLLSRAGFVYDAVEM 425
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
I+ MP+ P V+W ++LG+C H +L E + L+Q+D
Sbjct: 426 INRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMD 465
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 27/163 (16%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G ++ +H + F S+ + +DM+ KCG +D ES FL
Sbjct: 279 LGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCID--ESRFL------------- 323
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
F +MPE+D SWN MI L HG G E L F + GF ++ + +A
Sbjct: 324 -------FDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTA 376
Query: 185 RASVYDLEWGPH---LHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
+ + G H L + +EP ++ + ++D+ + G
Sbjct: 377 CSRAGLVSEGKHFFKLMTDTYGIEPEMEHY--GCMVDLLSRAG 417
>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
Length = 820
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 149/336 (44%), Gaps = 63/336 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + +HG+V K+ V + S +DM+ KC D
Sbjct: 357 CANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEG--------------- 401
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT-FIELWNHGFGLSSMLYAT 180
+ +FQ + +RD+V+WN ++ ++ FE C F + G ++T
Sbjct: 402 -------VKLFQCVGDRDVVTWNVLVMGFVQND-KFEEACNYFWVMRREGILPDEASFST 453
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+ AS+ L G +H +++ + Y+K C I +L+T
Sbjct: 454 VLHSSASLAALHQGTAIHDQIIKLG--------------YVKNMC--------ILGSLIT 491
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
MYA+ GS A FE + N+ISW +ISA+ G + F
Sbjct: 492 MYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVT 551
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEM 343
FV +LS CSH+G V +G +F +M K ++ CMVDLLG +G L EAK+ I+ M
Sbjct: 552 FVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESM 611
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P KPT +WGALLGAC + N K+ L +++
Sbjct: 612 PMKPTPSVWGALLGACRKYGNLKMGREAAERLFEME 647
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 96/240 (40%), Gaps = 38/240 (15%)
Query: 91 KSSIDMHVKCGAVDYAESAFL--RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
K + +H + +Y FL ++N C LL + +V+W ++I+
Sbjct: 159 KHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLIT 218
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
L+ + L F ++ G + +++ SA A+ + G LHS +
Sbjct: 219 HLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDA 278
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
++FVG+ L+DMY KC + S++++ F+ M RN++SW
Sbjct: 279 NIFVGTALVDMYAKCA--DMHSAVRV--------------------FDQMPERNLVSWNS 316
Query: 269 LISAFSQAGVLEKPRFFFFFV--------------SLLSGCSHSGPVTKGKHYFTAMAKF 314
+I F + ++ F V S+LS C++ G + G+ + K+
Sbjct: 317 MIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKY 376
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 136/276 (49%), Gaps = 39/276 (14%)
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
R +F KMPE+++VSW TM++ +++G + L TF + G + +A SA A
Sbjct: 259 RAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACA 318
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ L+ G +H+ YL NG + ++ IG ALV MYA+ G
Sbjct: 319 KIGALDAGLRIHN--------------------YL--SGNGFKLNLVIGTALVDMYAKCG 356
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
+ + A+ F + ++ W V+I ++ G K +F F+++L+
Sbjct: 357 NIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLN 416
Query: 294 GCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSHSG V +G +F M + ++ +VD+LG +G L EA K I MP P
Sbjct: 417 ACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDF 476
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
V+WGAL AC +H N ++AEL + LLQL+ K GS
Sbjct: 477 VVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGS 512
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 20/138 (14%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------- 287
+L+ + + G +A F M +N++SW +++ FSQ G EK FF
Sbjct: 245 NSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGAR 304
Query: 288 -----FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKL 339
VS LS C+ G + G ++ + V +VD+ G + A+K+
Sbjct: 305 PNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKV 364
Query: 340 IDEMPSKP----TCVIWG 353
E K + +IWG
Sbjct: 365 FHETKEKGLLIWSVMIWG 382
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 143/342 (41%), Gaps = 77/342 (22%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
HG+V K SD I S I + KCG + F+
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFV----------------------N 196
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
P RD+VSWN+MI+ + G E L F E+ + + SA A D E+G
Sbjct: 197 XPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG 256
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+HS + N I S+ + A++ MY + GS + A
Sbjct: 257 RWVHSYIER----------------------NRIXESLTLSNAMLDMYTKCGSVEDAKRL 294
Query: 255 FELMSRRNMISWMVLISAFSQAGVLE--------------------------KPRFFFFF 288
F+ M ++++SW ++ +++ G + KP F
Sbjct: 295 FDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTF- 353
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
++L CSH G V +G+ +F M + Y ++ CMVD+LG +GLL EA +LI++M
Sbjct: 354 TNILCACSHVGLVEEGRTFFNQM-ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKM 412
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
P P +WGALLGAC H N LAE L++L+ G+
Sbjct: 413 PMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGA 454
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 107/290 (36%), Gaps = 55/290 (18%)
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI---------------MFQKMPERDLVSW 143
+C + +ML LF F RL+ +F ++P +L +W
Sbjct: 44 QCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTW 103
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSML-YATAFSARASVYDLEWGPHLHSRVV 202
NT+I ++L F+ + + + A + + +L G H V+
Sbjct: 104 NTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVI 163
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+ DVF+ + LI Y KCG G+ + F RR+
Sbjct: 164 KVLLGSDVFILNSLIHFYAKCGELGLGYRV----------------------FVNXPRRD 201
Query: 263 MISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK--HY 307
++SW +I+AF Q G E+ F V +LS C+ G+ H
Sbjct: 202 VVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHS 261
Query: 308 FTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ + + M+D+ G + +AK+L D+MP K V W +L
Sbjct: 262 YIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEK-DIVSWTTML 310
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 110/445 (24%), Positives = 186/445 (41%), Gaps = 104/445 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID--------DDYRVFCDIGP-RYL 49
+KAC ++ + + R++H+ L+ + F+ LID D R+ D+ P + +
Sbjct: 296 LKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDV 355
Query: 50 FTYNTMINGGVRC--------LCVGNIKMAL------------------------HLHGL 77
+N++I+G C L K L +H +
Sbjct: 356 IVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTI 415
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K + D +A S +D + KC ++ A +F+ P
Sbjct: 416 SIKSGYQYDGYVANSLLDSYGKCCLLEDAAK----------------------VFEVCPA 453
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
DLV++ +MI+ +++G G E L ++ + + + ++++ F+A A++ E G +
Sbjct: 454 EDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQI 513
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H V+ DVF G+ L++MY KC GS A F
Sbjct: 514 HVHVLKCGLLSDVFAGNSLVNMYAKC----------------------GSIDDASCIFNE 551
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKG 304
+S R ++SW +I +Q G K F+ VS+LS C+H+G VT+
Sbjct: 552 ISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEA 611
Query: 305 KHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+ +F M K ++ CMVD+LG G L EA L+ EMP + + +WGALLGA
Sbjct: 612 RRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAAR 671
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
H N +L LL L+ + G+
Sbjct: 672 IHKNIELGRHAAEMLLTLEPEKSGT 696
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 119/277 (42%), Gaps = 62/277 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+K C ++L + ++IH + T +IS+ I P F+ +T++N
Sbjct: 155 LKGCSLTRNLELGKQIHRVALVTEMIST--------------GISPNE-FSLSTVLNA-- 197
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C + + + +HG + K + SD A + +DM+ K G + A
Sbjct: 198 -CAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAA-------------- 242
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ +F ++P+ D+VSWN +I+ H L ++ ++ S ++
Sbjct: 243 --------IAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSS 294
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A A A++ ++ G LHS ++ M+ D FVG GLIDMY KCG
Sbjct: 295 ALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGL--------------- 339
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
Q A + F+LM +++I W +IS +S G
Sbjct: 340 -------LQDARMVFDLMPXKDVIVWNSIISGYSNCG 369
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 47/276 (17%)
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
C F + R L++ P DLVSW+ +IS ++G G E L T+ E++ G + ++
Sbjct: 95 CQCFRVARKLVIDSSEP--DLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFS 152
Query: 180 TAFSARASVYDLEWGPHLH-----SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS--- 231
+ + +LE G +H + ++ S + F S +++ C G+E
Sbjct: 153 SVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLN-----ACAGLEDENYG 207
Query: 232 -------IQIG--------KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA---- 272
I++G AL+ MYA+ G + A F + + +++SW +I+
Sbjct: 208 MKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLH 267
Query: 273 ---------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYF 320
+ G F S L C+ G V G+ +A+ K +
Sbjct: 268 EKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVG 327
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V ++D+ GLL +A+ + D MP K ++W +++
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXKDV-IVWNSII 362
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 113/453 (24%), Positives = 192/453 (42%), Gaps = 98/453 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTC--LISSIFLQLIDDDY---------RVFCDIGPRYL 49
+KA G L+ + K+ ++ T L + ++ LID Y ++F ++ R
Sbjct: 204 LKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDS 263
Query: 50 FTYNTMINGGVRC---------------------------------LCVGNIKMALHLHG 76
++N MI+G VRC + N+++ +H
Sbjct: 264 VSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN 323
Query: 77 LVKK-FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR 127
V+K F + I + +DM+ KCG ++ A + F M ++ CW G +R
Sbjct: 324 YVRKELGFTT--RIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLR 381
Query: 128 -LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F K P RD+V W MI+ + + + F E+ T + A
Sbjct: 382 EARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCA 441
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ LE G +H + ++DV VG+ LI+MY KCGC ++ S++I
Sbjct: 442 QLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGC--VDKSLEI------------ 487
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLS 293
F + ++ SW +I + G E R F F+ +LS
Sbjct: 488 --------FYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLS 539
Query: 294 GCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSH G V +G+ +F +M K ++ C++DLLG +GLL EA++LI E+P +
Sbjct: 540 ACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCE 599
Query: 350 VI---WGALLGACCSHYNTKLAELVMRNLLQLD 379
++ +GALL AC H N + E + + L ++
Sbjct: 600 IVVPLYGALLSACRIHNNVDMGERLAKKLENIE 632
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 99/275 (36%), Gaps = 63/275 (22%)
Query: 101 GAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
G + YAE F + +PSLF + N M+ I + G + L
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVY----------------------NVMVKIYAKRGILRKVL 182
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F +L G Y A + D+ G + +V LD +V + LIDMY
Sbjct: 183 LLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMY 242
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+ S+++ K L F+ M+ R+ +SW V+IS + + E
Sbjct: 243 YEL------SNVENAKKL----------------FDEMTTRDSVSWNVMISGYVRCRRFE 280
Query: 281 KPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCM 323
F VS LS C+ + G + K FT T +
Sbjct: 281 DAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT-TRIDNAL 339
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+D+ G L A+ + DEM K + W +++
Sbjct: 340 LDMYAKCGCLNIARNIFDEMSMK-NVICWTSMISG 373
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 122/265 (46%), Gaps = 39/265 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
MF K+ + LVSWN MI++ + E + F+++ +H ++ A+ A +
Sbjct: 262 MFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSA 321
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H VV ++ + + LIDMY KCGC +
Sbjct: 322 LLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGC----------------------LEY 359
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A F+ M R+++SW +ISA+ G F FVS+LS CSH
Sbjct: 360 AREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSH 419
Query: 298 SGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G + +G++YF M + +FVCMVDLLG +G + EA I +MP +P +WG
Sbjct: 420 AGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 479
Query: 354 ALLGACCSHYNTKLAELVMRNLLQL 378
ALL AC + N + L L QL
Sbjct: 480 ALLSACRVYSNMIIGLLAADQLFQL 504
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++P++++V +N MI + + L F + HG Y A + D
Sbjct: 93 IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 152
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
L G +H+ VV + L+VFVG+GLI MY KCGC
Sbjct: 153 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGC 187
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 22/91 (24%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
IDM+ KCG ++YA F +M KF RD+VSW +MIS +
Sbjct: 348 IDMYAKCGCLEYAREVFDQM--------KF--------------RDVVSWTSMISAYGMN 385
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
G G + + F + + G S+ + + SA
Sbjct: 386 GKGRDAVSLFSRMQDLGLNPDSIAFVSVLSA 416
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 157/343 (45%), Gaps = 50/343 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM-LNPSLFC 120
C + I+ LHG V K VSDE + + + ++V CGA+ A F + L ++
Sbjct: 133 CAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVL 192
Query: 121 WKF---GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W G +R+ +F MP + +VSWN MIS ++G E + F ++
Sbjct: 193 WNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDV 252
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ + + A + + +E G +H E +D +GS LIDMY KCG I+ +
Sbjct: 253 PPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCG--SIDKA 310
Query: 232 IQIGKALVTMYAEGGSTQKADLAFE-LMSRRNMISWMVLISAFSQAGVLEKPRFFFF--- 287
+Q+ FE + +++N I+W +I + G F+
Sbjct: 311 VQV--------------------FEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQ 350
Query: 288 ----------FVSLLSGCSHSGPVTKGK----HYFTAMAKFTYTCYFVCMVDLLGLSGLL 333
++ +LS CSH+G V +G+ H + ++ CMVDLLG +G L
Sbjct: 351 QAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCL 410
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
EA++LI MP KP VI ALLGAC H N ++ E + + L+
Sbjct: 411 EEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILM 453
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 34/271 (12%)
Query: 132 FQKMPERDLVSWNTMISILTR-------HGFGFETLCTFIELWNHGF-GLSSMLYATAFS 183
F ++ + SWNT+I L H E L F + G + +
Sbjct: 72 FSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLK 131
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC----------NGIESSIQ 233
A A + +E G LH VV + D FV S L+ +Y+ CG +E ++
Sbjct: 132 ACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVV 191
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK------------ 281
+ ++ Y G + + F+ M ++++SW V+IS +Q G ++
Sbjct: 192 LWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGD 251
Query: 282 -PRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAK 337
P + VS+L S G + GK H F + ++D+ G + +A
Sbjct: 252 VPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAV 311
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
++ + + +K + W A++G H + A
Sbjct: 312 QVFEGIRNKKNPITWSAIIGGLAMHGRARDA 342
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 180/429 (41%), Gaps = 80/429 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+KA S P+ R +H+ ++ I ++ LID D +VF ++ R +
Sbjct: 127 IKALSSAGVAPL-RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDV 185
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSI------DMHVKCGAV 103
++N+ + VR G V+ + DE + K ++ D + K G V
Sbjct: 186 VSWNSAMAAMVR-------------QGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDV 232
Query: 104 DYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHG 154
+ A F M ++ W K G + + ++F KMP ++LV+W M+S ++G
Sbjct: 233 EEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNG 292
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
E F ++ L + +A A L G +H V + V +
Sbjct: 293 LVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCN 352
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL-MSRRNMISWMVLISAF 273
LIDM+ KCGC +AD F+ + ++ +SW +I F
Sbjct: 353 ALIDMFCKCGC----------------------INRADYVFDTEIVEKDSVSWNTIIGGF 390
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTY 316
+ G +K FF +++LS C+H G V +G+ YF M +
Sbjct: 391 AMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQ 450
Query: 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CM+DLLG GL+ EA LI MP P VIWG+LL AC H N + AE+ + L
Sbjct: 451 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELS 510
Query: 377 QLDVKVFGS 385
+L G+
Sbjct: 511 KLQPSNAGN 519
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+ +F MP RD +++ +I L+ G + + +H L S+ +A
Sbjct: 109 VAVFSAMPHRDSFTYSFLIKALSSAG-----VAPLRAVHSHVVKLGSIEDTYVGNALIDA 163
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFV-GSGLIDMYLKCGCNG--------IESSIQIGKALV 239
Y G S+V P DV S + M + G +E L+
Sbjct: 164 YSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLL 223
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVS 290
Y + G ++A F+ M RN++SW ++S + + G +E R F +
Sbjct: 224 DGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTI 283
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKL 339
++S C+ +G V + FT M + + +V +L SG L K++
Sbjct: 284 MVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRI 335
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 121/470 (25%), Positives = 190/470 (40%), Gaps = 119/470 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLIST------CLISSIFLQLIDDDYR-------VFCDIGPR 47
+KAC S++ L +++HA L+ T + + I D+R VF + R
Sbjct: 22 IKACKSMREL---KQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78
Query: 48 YLFTYNTMINGGVR----------------------------------CLCVGNIKMALH 73
F +NT+I C + +
Sbjct: 79 NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQ 138
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF---------LRMLNPSLFCWKFG 124
+HGL+ KF V DE + + + M+V CG+++ A F +R L +F
Sbjct: 139 VHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFN 198
Query: 125 IIRLLIM----------------FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
++ +M F +M +R +VSWN MIS ++GF E + F +
Sbjct: 199 VVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQ 258
Query: 169 HGFGLSSML-YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
G L + + + A + + LE G +H L N
Sbjct: 259 MGDVLPNRVTLVSVLPAISRLGVLELGKWVH----------------------LYAEKNK 296
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
I +G ALV MYA+ GS +KA FE + + N+I+W +I + G + F +
Sbjct: 297 IRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHG--KANDIFNY 354
Query: 288 ---------------FVSLLSGCSHSGPVTKGKHYFTAMAKFT----YTCYFVCMVDLLG 328
++++LS CSH+G V +G+ +F M ++ CMVDLLG
Sbjct: 355 LSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLG 414
Query: 329 LSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+G L EA++LI MP KP VIW ALLGA H N K+ L+Q+
Sbjct: 415 RAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQM 464
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 149/347 (42%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C + + +HG + K D + + +DM+ KCG + AE
Sbjct: 442 FTYGSVVKA---CAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEK- 497
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ ++ E+ VSWN++IS + F ++
Sbjct: 498 ---------------------IHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEM 536
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + YAT A++ +E G +H++++ + DV++ S L+DMY KC
Sbjct: 537 GVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKC------ 590
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
G+ Q + L FE +R+ ++W +I A++ G E+ F
Sbjct: 591 ----------------GNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEM 634
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
F+S+L C+H G V KG HYF M + ++ CMVDLLG S
Sbjct: 635 QLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQ 694
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ EA KLI+ M + VIW LL C N ++AE +LLQLD
Sbjct: 695 VNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLD 741
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 131/327 (40%), Gaps = 61/327 (18%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+ LHGL K + +A + +DM+ KCGA ++
Sbjct: 359 GIQLHGLAVKCGLGFNICVANTILDMYGKCGA----------------------LVEACT 396
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M RD VSWN +I+ ++ +TL F+ + Y + A A
Sbjct: 397 IFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQA 456
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +G +H R+V LD FVGS L+DMY KCG +
Sbjct: 457 LNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGM----------------------LME 494
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSH 297
A+ + + + +SW +IS FS E R+F F + ++L C++
Sbjct: 495 AEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCAN 554
Query: 298 SGPVTKGKHYFTAMAKFT-YTCYFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ GK + K ++ ++ +VD+ G + +++ + ++ P K V W A
Sbjct: 555 MATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTP-KRDYVTWSA 613
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVK 381
++ A H + + A + + L+VK
Sbjct: 614 MICAYAYHGHGEQAIKLFEEMQLLNVK 640
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 45/253 (17%)
Query: 44 IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
+ P FT++ ++ +C + + H + FV +A + + K +
Sbjct: 1 MNPTKKFTFSHILQ---KCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNM 57
Query: 104 DYAESAFLRMLNPSLFCWK---FGIIRLLIM------FQKMPERDLVSWNTMISILTRHG 154
+YA F RM + + W FG + M F MPERD+VSWN+++S +G
Sbjct: 58 NYAFKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNG 117
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
+++ F+ + + ++ A + + D G +H + M DV GS
Sbjct: 118 VNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGS 177
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL---MSRRNMISWMVLIS 271
L+DMY KC +K D AF + M RN++ W +I
Sbjct: 178 ALVDMYSKC-------------------------KKLDGAFRIFREMPERNLVCWSAVI- 211
Query: 272 AFSQAGVLEKPRF 284
AG ++ RF
Sbjct: 212 ----AGYVQNDRF 220
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 128/335 (38%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + K+ LHG K F D I +++DM+ KC + A W
Sbjct: 249 CAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDA--------------W 294
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
K +F +P S+N +I R G + L F L + + A
Sbjct: 295 K--------VFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGA 346
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A + + G LH V ++ V + ++DMY KCG ALV
Sbjct: 347 LTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCG------------ALV-- 392
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
+A F+ M RR+ +SW +I+A Q + K F +
Sbjct: 393 --------EACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTY 444
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPS 345
S++ C+ + G + K +FV +VD+ G G+L EA+K+ D +
Sbjct: 445 GSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEE 504
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
K T V W +++ S ++ A+ +L++ V
Sbjct: 505 K-TTVSWNSIISGFSSQKQSENAQRYFSQMLEMGV 538
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 121/313 (38%), Gaps = 61/313 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + L +H L + F +D + +DM+ KC +D
Sbjct: 148 CSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLD----------------- 190
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
G R+ F++MPER+LV W+ +I+ ++ E L F ++ G G+S YA+
Sbjct: 191 --GAFRI---FREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI--------- 232
F + A + + G LH + + + D +G+ +DMY KC +
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPR 305
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
Q A++ YA KA F+ + R + F L
Sbjct: 306 QSYNAIIVGYARQDQGLKALEIFQSLQR----------------------TYLSFDEISL 343
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTC---YFVC----MVDLLGLSGLLGEAKKLIDEMPS 345
SG + V KG + C + +C ++D+ G G L EA + D+M
Sbjct: 344 SGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMER 403
Query: 346 KPTCVIWGALLGA 358
+ V W A++ A
Sbjct: 404 RDA-VSWNAIIAA 415
>gi|302801247|ref|XP_002982380.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
gi|300149972|gb|EFJ16625.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
Length = 730
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 163/375 (43%), Gaps = 68/375 (18%)
Query: 37 DYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
D V I P + N + G + VG++ +A LH V F+ I + I+M
Sbjct: 394 DKMVGQSIQPDSVVLLNVIYAGSL----VGDVGLARKLHARVASSSFMLKIQIQNALINM 449
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ +CG+++ A +F + ++LVSWN M+ +HG+
Sbjct: 450 YARCGSLEEARR----------------------VFDGIERKNLVSWNAMMGSYVQHGYD 487
Query: 157 FETLCTFIELWNHGF-----GLSS----MLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
E + F E+ GL S ++ A A + L G +H+ + + P
Sbjct: 488 EEAIALFSEMKTGNSKAMESGLRSSPDCIMAVILLCAHAGLGKLAEGRCIHAELCAVNP- 546
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
++ GS +++ +G ALV+MYA GS A AF M R+ ++W
Sbjct: 547 -EILAGS--------------TTNVTLGNALVSMYARCGSMGDASAAFHHMRARDTVTWS 591
Query: 268 VLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK- 313
L++ ++ G E + +VS+L+ CSH+G + + +H+F +M +
Sbjct: 592 SLVAGYAHHGHAEYAILLYRDMHLEGVQPDSVTYVSILNSCSHAGLLAQARHFFVSMVED 651
Query: 314 ---FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
+ ++ CMVD+LG +G +G A+ ++ MP +P V W LLG C H + + +
Sbjct: 652 HCLAAWPDHWKCMVDVLGRAGFVGRAEDVVRNMPFQPDVVAWNTLLGCCKVHGDAQRGAV 711
Query: 371 VMRNLLQLDVKVFGS 385
RN + + GS
Sbjct: 712 AARNAVGISPGFAGS 726
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 96/411 (23%), Positives = 164/411 (39%), Gaps = 105/411 (25%)
Query: 2 KACGSLKSLPIARKIHAQLIS------TCLISSIFL-----QLIDDDYRVFCDIGPRYLF 50
+ CG SL AR + Q+ +C+I++ + I+ R+ D+ P +
Sbjct: 45 RKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYGQAGHCREAINLFQRM--DVEPNEMV 102
Query: 51 TYNTMIN-GGVRCLCVGNIKMALHLHGL---VKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
+T+ G + L +G MA+H L ++K FV + ++M+ KCGA++ A
Sbjct: 103 IVSTLAACSGAKDLALG---MAIHARILSPDLRKSVFV-----GTALLNMYAKCGAIEQA 154
Query: 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
+ +F +MP +D+VSW MI+ + G + L T +
Sbjct: 155 RA----------------------VFDQMPHKDVVSWTAMITAFAQMGDCRQALETLEGM 192
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
+ + + A +A +S L+ G +H+ V+ +
Sbjct: 193 IQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDL---------------------- 230
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G+ I I ALV+MYA+G S ++A F+ M RN +SW +I+AF+ + F
Sbjct: 231 GLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAFAASAQSCSAMGLF 290
Query: 287 F-------------FVSLLSGCSHSGPVTKGKHYFT-------------AMAKFTYTCYF 320
F+ +LS CS +G + K + ++ T Y
Sbjct: 291 HGMNLEGIKPDDVSFLGVLSACSSTGCLRSCKRIHSQLELAAVHSPPDLSVENSLVTAYA 350
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN-TKLAEL 370
C G L A+++ +P K V W A+L A H N +K EL
Sbjct: 351 KC--------GDLEAAERIFQRIPGK-NVVSWTAMLTAYTFHGNGSKALEL 392
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/451 (19%), Positives = 168/451 (37%), Gaps = 121/451 (26%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+ AC S + L RKIHA +I L I +Q ++ VF + R
Sbjct: 208 ITACSSREFLDRGRKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNR 267
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++N+MI G++ C G ++ +H
Sbjct: 268 VSWNSMIAAFAASAQSCSAMGLFHGMNLEGIKPDDVSFLGVLSACSSTGCLRSCKRIHSQ 327
Query: 78 VK--KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM 135
++ + D S+ S + + KCG ++ AE +FQ++
Sbjct: 328 LELAAVHSPPDLSVENSLVTAYAKCGDLEAAER----------------------IFQRI 365
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
P +++VSW M++ T HG G + L + ++ S++ A + V D+
Sbjct: 366 PGKNVVSWTAMLTAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLAR 425
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
LH+RV L + + + LI+MY +C GS ++A F
Sbjct: 426 KLHARVASSSFMLKIQIQNALINMYARC----------------------GSLEEARRVF 463
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV------SLLSG--------------C 295
+ + R+N++SW ++ ++ Q G E+ F + ++ SG C
Sbjct: 464 DGIERKNLVSWNAMMGSYVQHGYDEEAIALFSEMKTGNSKAMESGLRSSPDCIMAVILLC 523
Query: 296 SHS--GPVTKGKHYFTAM---------AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+H+ G + +G+ + T +V + G +G+A M
Sbjct: 524 AHAGLGKLAEGRCIHAELCAVNPEILAGSTTNVTLGNALVSMYARCGSMGDASAAFHHMR 583
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ T V W +L+ H + + A L+ R++
Sbjct: 584 ARDT-VTWSSLVAGYAHHGHAEYAILLYRDM 613
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 231 SIQIGKALVTMYAE-GGSTQKAD--LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
S+ +G L+ MY + GG++ AD F+ M +++++SW +I+A+ QAG + F
Sbjct: 33 SVHLGNLLIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYGQAGHCREAINLFQ 92
Query: 287 ---------FFVSLLSGCSHSGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLG 334
VS L+ CS + + G + ++ FV ++++ G +
Sbjct: 93 RMDVEPNEMVIVSTLAACSGAKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIE 152
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+A+ + D+MP K V W A++ A + + A + ++Q V+
Sbjct: 153 QARAVFDQMPHKDV-VSWTAMITAFAQMGDCRQALETLEGMIQARVQ 198
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 157/362 (43%), Gaps = 74/362 (20%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+ M+N GVR C + + +H L K + D + S +DM+ K
Sbjct: 114 FRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAK 173
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
CG + A +F +MPER++VSW+ MI + G E
Sbjct: 174 CGEIGDARH----------------------LFDEMPERNVVSWSGMIYGYAQLDDGVEA 211
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
L F + ++ +++ +S LE G +H + M FVGS LI +
Sbjct: 212 LTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISL 271
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA--- 276
Y KCG IE + Q+ F+ + RN+ W ++ A +Q
Sbjct: 272 YSKCGV--IEGAYQV--------------------FDEIPTRNLGLWNSMLIACAQHAHT 309
Query: 277 ----GVLE-------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVC 322
G+ E KP F F +S+L CSH+G V KG+ YF+ M + T ++
Sbjct: 310 QRVFGLFEEMGNVGMKPNFISF-LSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYAS 368
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
+VDLLG +G L EA +I +MP +PT +WGALL C H +T++A V +L++D
Sbjct: 369 LVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSS 428
Query: 383 FG 384
G
Sbjct: 429 SG 430
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 39/254 (15%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F + P++ +W+++IS ++ L F + N G +Y +A A +
Sbjct: 80 LQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFL 139
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+ G +H V DVFVGS L+DMY KCG +IG
Sbjct: 140 RRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCG--------EIG------------- 178
Query: 249 QKADLAFELMSRRNMISWMVLI-------------SAFSQAGVLEKPRFFFFFVSLLSGC 295
A F+ M RN++SW +I + F QA + + F F S++ C
Sbjct: 179 -DARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVC 237
Query: 296 SHSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
S S + GK K ++ + FV ++ L G++ A ++ DE+P++ +W
Sbjct: 238 SSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTR-NLGLW 296
Query: 353 GALLGACCSHYNTK 366
++L AC H +T+
Sbjct: 297 NSMLIACAQHAHTQ 310
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 31/249 (12%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYLF 50
KACG L+ + + +H + T +F+ L+D D +F ++ R +
Sbjct: 134 KACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVV 193
Query: 51 TYNTMING------GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM------HV 98
+++ MI G GV L + K AL V F F S + SS + H
Sbjct: 194 SWSGMIYGYAQLDDGVEALTL--FKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHG 251
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGF 157
C + + S+F+ SL+ K G+I +F ++P R+L WN+M+ +H
Sbjct: 252 LCLKMSFDSSSFVGSALISLYS-KCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQ 310
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS--RVVHMEPSLDVFVGSG 215
F E+ N G + + + + A + +E G S R +EP + + +
Sbjct: 311 RVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHY--AS 368
Query: 216 LIDMYLKCG 224
L+D+ + G
Sbjct: 369 LVDLLGRAG 377
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 131/274 (47%), Gaps = 34/274 (12%)
Query: 122 KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ G+IR +F MPERD VSW+TMIS + G L F + N + + A+
Sbjct: 355 RNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLAS 414
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-----------CNGIE 229
A SA A L+ G +H +++ L + SGLIDMY KCG N
Sbjct: 415 ALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVNDKF 474
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV 289
SS+ A++ A G A ++ +L S+ S KP F+
Sbjct: 475 SSVSPWNAMICSLAIHG---YAHMSLDLFSQLQRTSI--------------KPN-SITFI 516
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+LS C H+G VTKGK+YF +M + ++ CMVDLLG +G L EA++L+ MP
Sbjct: 517 GVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPM 576
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
KP VIWG++L A + N L E L +LD
Sbjct: 577 KPDVVIWGSILSASRAQGNVALGERAAEELAKLD 610
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 101/259 (38%), Gaps = 27/259 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F ++PERD VSW T+I + + ++++ G +L A A
Sbjct: 232 VFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYS 291
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALVT 240
+ G LH+ ++ FV + L+ Y CG G+ +S AL+
Sbjct: 292 AVTEGQQLHTVILKNGFDALAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLA 351
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
G ++A F+ M R+ +SW +IS + Q G + F+
Sbjct: 352 ALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVT 411
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMP 344
S LS + SG + +GK H + T ++D+ G + +A + + +
Sbjct: 412 LASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVN 471
Query: 345 SKPTCV-IWGALLGACCSH 362
K + V W A++ + H
Sbjct: 472 DKFSSVSPWNAMICSLAIH 490
>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 1000
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 152/321 (47%), Gaps = 57/321 (17%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH + + F+SDE +A S I M+ KCG ++ + + +F
Sbjct: 471 LHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTN----------------------IFN 508
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+ +++VSWN +I+ + G G E L FI++ + G L + A S+ AS+ LE
Sbjct: 509 SITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEE 568
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-----------GKALVTMY 242
G LH + D +V + +DMY KCG ++ +Q+ L++ Y
Sbjct: 569 GMQLHGLGMKSGLDSDSYVVNAAMDMYGKCG--KMDEMLQVVPDQAIRPQQCWNTLISGY 626
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVT 302
A+ G ++A+ F+ M KP + F V+LLS CSH+G V
Sbjct: 627 AKYGYFKEAEETFKQM-----------------VATGRKPDYVTF-VALLSACSHAGLVD 668
Query: 303 KGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
KG Y+ +MA F + + VC+VDLLG G EA+K I+EMP P +IW +LL +
Sbjct: 669 KGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSS 728
Query: 359 CCSHYNTKLAELVMRNLLQLD 379
+H N ++ + LL+LD
Sbjct: 729 SRTHKNLEIGRKTAKKLLELD 749
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 100/245 (40%), Gaps = 41/245 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M E D +SWN MIS+ + G + F ++ +HG + + S AS
Sbjct: 202 LFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDH 261
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +HS C + ++SS+ + ALV MY+ G
Sbjct: 262 FSHGSGIHSL----------------------CLRSSLDSSVTVINALVNMYSAAGKLSD 299
Query: 251 ADLAFELMSRRNMISWMVLISAFSQA----------GVL----EKPRFFFFFVSLLSGCS 296
A+ F MSRR++ISW +IS++ Q G L E P F S L CS
Sbjct: 300 AEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPN-HLTFSSALGACS 358
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + GK + + + + ++ + G + +A+K+ MP+ V +
Sbjct: 359 SPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHD-IVSYN 417
Query: 354 ALLGA 358
L+G
Sbjct: 418 VLIGG 422
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 108/254 (42%), Gaps = 39/254 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER++VSW ++ L+ +G+ E L + ++ G ++ +AT S S+ +
Sbjct: 101 LFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLEN 160
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G + S+V+ +G+++ + + +L+TM+ G
Sbjct: 161 EVPGLQVASQVI----------------------VSGLQNQVSVANSLITMFGNLGRVHD 198
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A+ F+ M + ISW +IS +S G+ K F SL+S C+
Sbjct: 199 AEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCAS 258
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
S + G H + + + +V++ +G L +A+ L M S+ + W
Sbjct: 259 SDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM-SRRDLISWNT 317
Query: 355 LLGACCSHYNTKLA 368
++ + + N+ A
Sbjct: 318 MISSYVQNCNSTDA 331
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 120/320 (37%), Gaps = 62/320 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H +V + + + S I M+ KC +++ AE +FQ
Sbjct: 369 VHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEK----------------------VFQ 406
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL-E 192
MP D+VS+N +I G + + F + + G + + + AS DL
Sbjct: 407 SMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHN 466
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
+G LH+ ++ D +V + LI MY KCG +ESS I
Sbjct: 467 YGRPLHAYIIRTGFLSDEYVANSLITMYAKCG--NLESSTNI------------------ 506
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSG 299
F ++ +N++SW +I+A Q G E+ F LS C+
Sbjct: 507 --FNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLA 564
Query: 300 PVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ +G H + Y V +D+ G G + E +++ + +P W L+
Sbjct: 565 SLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ-QCWNTLI 623
Query: 357 GACCSHYNTKLAELVMRNLL 376
+ K AE + ++
Sbjct: 624 SGYAKYGYFKEAEETFKQMV 643
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M RDL+SWNTMIS ++ + L T +L++ + + +++A A +S
Sbjct: 303 LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGA 362
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H+ V+ + ++ VG+ LI MY KC S +
Sbjct: 363 LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKC----------------------NSMED 400
Query: 251 ADLAFELMSRRNMISWMVLISAFS 274
A+ F+ M +++S+ VLI ++
Sbjct: 401 AEKVFQSMPTHDIVSYNVLIGGYA 424
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 17/146 (11%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK----- 281
G+ ++ IG AL+ +Y G A F M RN++SW L+ A S G LE+
Sbjct: 74 GLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAY 133
Query: 282 -----------PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLS 330
F VSL + P + ++ + G
Sbjct: 134 RQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNL 193
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALL 356
G + +A+KL D M T + W A++
Sbjct: 194 GRVHDAEKLFDRMEEHDT-ISWNAMI 218
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 28/108 (25%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ + LHGL K SD + +++DM+ KCG +D
Sbjct: 560 CASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDE---------------- 603
Query: 122 KFGIIRLLIMFQKMPE---RDLVSWNTMISILTRHGFGFETLCTFIEL 166
M Q +P+ R WNT+IS ++G+ E TF ++
Sbjct: 604 ---------MLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQM 642
>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
Length = 1215
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 152/321 (47%), Gaps = 57/321 (17%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH + + F+SDE +A S I M+ KCG ++ + + +F
Sbjct: 773 LHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTN----------------------IFN 810
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+ +++VSWN +I+ + G G E L FI++ + G L + A S+ AS+ LE
Sbjct: 811 SITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEE 870
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-----------GKALVTMY 242
G LH + D +V + +DMY KCG ++ +Q+ L++ Y
Sbjct: 871 GMQLHGLGMKSGLDSDSYVVNAAMDMYGKCG--KMDEMLQVVPDQAIRPQQCWNTLISGY 928
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVT 302
A+ G ++A+ F+ M KP + F V+LLS CSH+G V
Sbjct: 929 AKYGYFKEAEETFKQM-----------------VATGRKPDYVTF-VALLSACSHAGLVD 970
Query: 303 KGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
KG Y+ +MA F + + VC+VDLLG G EA+K I+EMP P +IW +LL +
Sbjct: 971 KGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSS 1030
Query: 359 CCSHYNTKLAELVMRNLLQLD 379
+H N ++ + LL+LD
Sbjct: 1031 SRTHKNLEIGRKTAKKLLELD 1051
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 100/244 (40%), Gaps = 41/244 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M E D +SWN MIS+ + G + F ++ +HG + + S AS
Sbjct: 504 LFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDH 563
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +HS C + ++SS+ + ALV MY+ G
Sbjct: 564 FSHGSGIHS----------------------LCLRSSLDSSVTVINALVNMYSAAGKLSD 601
Query: 251 ADLAFELMSRRNMISWMVLISAFSQA----------GVL----EKPRFFFFFVSLLSGCS 296
A+ F MSRR++ISW +IS++ Q G L E P F S L CS
Sbjct: 602 AEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPN-HLTFSSALGACS 660
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + GK + + + + ++ + G + +A+K+ MP+ V +
Sbjct: 661 SPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-DIVSYN 719
Query: 354 ALLG 357
L+G
Sbjct: 720 VLIG 723
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/360 (20%), Positives = 148/360 (41%), Gaps = 56/360 (15%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA-------KS 92
+F ++ R T+ T ++G VRC G K L G+ + +S ++A +
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHG--KAFEMLRGMREPGVPLSGFALASLVTACERR 356
Query: 93 SIDMHVKCGAVDYAESAFLRMLNP--------SLFCWKFGIIRLLIMFQKMPERDLVSWN 144
D + CGA +A + ++ L+ + + +F +MPER++VSW
Sbjct: 357 GRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWT 416
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
++ L+ +G+ E L + ++ G ++ +AT S S+ + G + S+V+
Sbjct: 417 ALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVI-- 474
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+G+++ + + +L+TM+ G A+ F+ M + I
Sbjct: 475 --------------------VSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTI 514
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK--HYFT 309
SW +IS +S G+ K F SL+S C+ S + G H
Sbjct: 515 SWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLC 574
Query: 310 AMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ + + +V++ +G L +A+ L M S+ + W ++ + + N+ A
Sbjct: 575 LRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM-SRRDLISWNTMISSYVQNCNSTDA 633
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M RDL+SWNTMIS ++ + L T +L++ + + +++A A +S
Sbjct: 605 LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGA 664
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H+ V+ + ++ VG+ LI MY KC S +
Sbjct: 665 LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKC----------------------NSMED 702
Query: 251 ADLAFELMSRRNMISWMVLISAFS 274
A+ F+ M +++S+ VLI ++
Sbjct: 703 AEKVFQSMPTHDIVSYNVLIGGYA 726
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 121/325 (37%), Gaps = 62/325 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H +V + + + S I M+ KC +++ AE +FQ
Sbjct: 671 VHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEK----------------------VFQ 708
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL-E 192
MP D+VS+N +I G + + F + + G + + + AS DL
Sbjct: 709 SMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHN 768
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
+G LH+ ++ D +V + LI MY KCG +ESS I
Sbjct: 769 YGRPLHAYIIRTGFLSDEYVANSLITMYAKCG--NLESSTNI------------------ 808
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSG 299
F ++ +N++SW +I+A Q G E+ F LS C+
Sbjct: 809 --FNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLA 866
Query: 300 PVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ +G H + Y V +D+ G G + E +++ + +P W L+
Sbjct: 867 SLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ-QCWNTLI 925
Query: 357 GACCSHYNTKLAELVMRNLLQLDVK 381
+ K AE + ++ K
Sbjct: 926 SGYAKYGYFKEAEETFKQMVATGRK 950
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 92/249 (36%), Gaps = 46/249 (18%)
Query: 129 LIMFQKMPERDLVSWNTMISILTR---HGFGFETLCTFIE--LWNHGFGLSSMLYATAFS 183
L +F +M +R +W T +S R HG FE L E + GF L+S++ TA
Sbjct: 297 LHLFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLV--TACE 354
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
R + G +H+ + H G+ ++ IG AL+ +Y
Sbjct: 355 RRGRDEGIACGAAIHA-LTHRA---------------------GLMGNVYIGTALLHLYG 392
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK----------------PRFFFF 287
G A F M RN++SW L+ A S G LE+ F
Sbjct: 393 SRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFAT 452
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
VSL + P + ++ + G G + +A+KL D M
Sbjct: 453 VVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHD 512
Query: 348 TCVIWGALL 356
T + W A++
Sbjct: 513 T-ISWNAMI 520
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 28/108 (25%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ + LHGL K SD + +++DM+ KCG +D
Sbjct: 862 CASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDE---------------- 905
Query: 122 KFGIIRLLIMFQKMPE---RDLVSWNTMISILTRHGFGFETLCTFIEL 166
M Q +P+ R WNT+IS ++G+ E TF ++
Sbjct: 906 ---------MLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQM 944
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 144/329 (43%), Gaps = 46/329 (13%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI---------MFQ 133
F SD + + IDM+VKCG + F ML+ + W I+ +F
Sbjct: 171 FGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFD 230
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+P +D+V+W M++ ++ E L F + G + SA A + ++
Sbjct: 231 GLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKY 290
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
+ DV SG G S++ +G AL+ MYA+ GS + A
Sbjct: 291 ANWVR----------DVAEQSGF----------GPTSNVVVGSALIDMYAKCGSVEDAYK 330
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
FE M RN+ S+ +I F+ G+ F F+ +L+ CSH+G
Sbjct: 331 VFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGM 390
Query: 301 VTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V +G+ F M + ++ CMVDLLG +G L EA L+ MP P +WGALL
Sbjct: 391 VEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALL 450
Query: 357 GACCSHYNTKLAELVMRNLLQLDVKVFGS 385
GAC H N +A++ +L +L+ G+
Sbjct: 451 GACRIHGNPDMAQIAASHLFELEPNGIGN 479
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 32/218 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++FQ++ + W +I G E++ + + G G S + A ++
Sbjct: 94 LVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAAL 153
Query: 190 DLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
D+ G +H++ + + D++VG+ LIDMY+KCGC G +
Sbjct: 154 DVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRV---------------- 197
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSG 299
F+ M R++ISW LI A+++ G +E F + ++++G + +
Sbjct: 198 ------FDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNA 251
Query: 300 PVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAK 337
+ F M V +V ++ LG AK
Sbjct: 252 RPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAK 289
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 162/369 (43%), Gaps = 62/369 (16%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH-- 97
VF + L ++N+M+ G V C G ++ A ++ F + + + SI +
Sbjct: 167 VFDGFSEKDLVSWNSMLGGYVWC---GEMENAQNM------FDEMPERDVVSWSIMIDGY 217
Query: 98 -VKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLLI-MFQKMPERDLVSWNTMI 147
K G V+ A F M L W K G + + +F KM +++++SW+ MI
Sbjct: 218 GKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMI 277
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+H E L F ++ G + A SA + + L+ G +H +
Sbjct: 278 DGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRML 337
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
LD+ V + L+DMYLKCG S +A F M RN++SW
Sbjct: 338 LDIVVQTALVDMYLKCG----------------------SRDEARRIFNSMPERNVVSWN 375
Query: 268 VLI-------------SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
V+I F+Q + P F+ +L CSH+ VT+G H F M K
Sbjct: 376 VMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQM-KG 434
Query: 315 TYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
Y ++ C+VDLLG +G L + + +I MP KP +WG+LL AC H N LAE
Sbjct: 435 VYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAE 494
Query: 370 LVMRNLLQL 378
+V+ L +L
Sbjct: 495 IVVERLAEL 503
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 117/316 (37%), Gaps = 57/316 (18%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHV-KCGAVDYAESAFLRMLNPSLF-CWKFGIIRLL 129
L +H + +SD A +D V K V+YAE F ++ P+ F C
Sbjct: 28 LQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFIC--------- 78
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
NTM+ T L + E+ G + Y A ++
Sbjct: 79 --------------NTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMC 124
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG---KALVTM----- 241
L G + V DVFV +GLI MY +CG G ++ G K LV+
Sbjct: 125 GLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLG 184
Query: 242 -YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGP 300
Y G + A F+ M R+++SW ++I + + G
Sbjct: 185 GYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGK---------------------KMGE 223
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
V + + +F +M + M+D G + A+++ D+M K + W ++
Sbjct: 224 VNRARVFFDSMPTRDLVSWN-SMIDGYAKVGEMEVAREIFDKMLQK-NVISWSIMIDGYA 281
Query: 361 SHYNTKLAELVMRNLL 376
H ++K A + R +L
Sbjct: 282 QHRDSKEALNLFRQML 297
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 191/474 (40%), Gaps = 113/474 (23%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYLF 50
+ACG+L ++ R +H + T L S +Q +++ + FC + + +F
Sbjct: 243 QACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVF 302
Query: 51 TYNTMIN-------------------------GGVRCLCV----GN---IKMALHLHGLV 78
++ ++I G+ C+ GN ++ HGL+
Sbjct: 303 SWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLI 362
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---FGIIRLLIMFQKM 135
+ +V D+++ + + M+ K G ++ AE F + S W FG + I+ +
Sbjct: 363 VRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNSV 422
Query: 136 PE-----------------------------RDLVSWNTMISILTRHGFGFETLCTFIEL 166
E RD+V+WNT+IS T G E + F E+
Sbjct: 423 DEDVSIANSLIDMYGKGGNLSIAWKMFCRTQRDVVTWNTLISSYTHSGHYAEAITLFDEM 482
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
+ +S SA + LE G +H + L+V +G+ L+DMY KCG
Sbjct: 483 ISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYAKCG-- 540
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+E S ++ F M +++ISW V+IS + G F
Sbjct: 541 QLEQSREL--------------------FNSMKEKDVISWNVMISGYGLHGDANSAMEVF 580
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLS 330
F+SLLS C+H+G V +GK F M ++ +F CM DLLG S
Sbjct: 581 QQMEQSNVKPNAITFLSLLSACTHAGYVDEGKQLFDRMQYYSIKPNLKHFACMADLLGRS 640
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
G L EA+ L+ MP P +WG LL AC H ++ V + ++ D + G
Sbjct: 641 GNLQEAEDLVQSMPICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDG 694
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 142/377 (37%), Gaps = 73/377 (19%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T+ G C +G + LHGL K + + S + M+ KCG V+ A ++F ++
Sbjct: 237 TLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQV 296
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+ ++D+ SW ++I + R GF E L F ++
Sbjct: 297 V----------------------DKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYP 334
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC-------- 225
++ + + + G H +V LD V + L+ MY K G
Sbjct: 335 DGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLF 394
Query: 226 -------------------------NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
N ++ + I +L+ MY +GG+ A F ++
Sbjct: 395 DGVHEWSKESWNTMVFGYVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMF-CRTQ 453
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK-- 305
R++++W LIS+++ +G + F V +LS C H + KGK
Sbjct: 454 RDVVTWNTLISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMV 513
Query: 306 HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
H + F +VD+ G L ++++L + M K + W ++ H +
Sbjct: 514 HQYIKEGGFELNVSLGTALVDMYAKCGQLEQSRELFNSMKEKDV-ISWNVMISGYGLHGD 572
Query: 365 TKLAELVMRNLLQLDVK 381
A V + + Q +VK
Sbjct: 573 ANSAMEVFQQMEQSNVK 589
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 73 HLHGLVKKF-YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131
++HGLV K F + ++ S + M+ KCG ++ A +M
Sbjct: 151 YIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDAS----------------------LM 188
Query: 132 FQKMPERDLVSWNTMISILTRHGF---GFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
F ++ RD+VSW ++ + G E LC + G ++S F A ++
Sbjct: 189 FDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNL 248
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
+ G LH V V S L+ MY KCG
Sbjct: 249 GAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCG 284
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 154/346 (44%), Gaps = 51/346 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ V ++++ HG V F+S+ I+ S +D + KC + A F M+ + W
Sbjct: 193 CVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAW 252
Query: 122 --------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
++G + +F MPE++ V+W ++I+ RH G + L F ++
Sbjct: 253 TTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIR 312
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+++ A AS+ L G +H ++ + V S LIDMY KCGC +
Sbjct: 313 PDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGC------L 366
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRR-NMISWMVLISAFSQAGVLE----------- 280
++G+ L F+LM + +++ W +IS+ +Q G +
Sbjct: 367 EVGR----------------LVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVR 410
Query: 281 ---KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLL 333
KP V LL+ CSHSG V +G + ++ ++ C++DLLG +G
Sbjct: 411 LGMKPDRITLIV-LLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHF 469
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+++MP KP IW ALLG C H N + V +++LD
Sbjct: 470 DTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELD 515
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 150/361 (41%), Gaps = 45/361 (12%)
Query: 61 RCLCVGNIKMA--LHLH----GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRML 114
+C ++K+ +HLH GL + F +A I+M+ KCG A F M
Sbjct: 59 QCANTKSLKLGKWVHLHLKVTGLKRPNTF-----LANHLINMYSKCGDYPSAYKVFDEMS 113
Query: 115 NPSLFCW--------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165
+L+ W K G I+ +F KMPE+D+VSWNTM+ + GF + L + E
Sbjct: 114 TRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRE 173
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
L G G + +A + V +LE H +V+ ++ + S ++D Y KC
Sbjct: 174 LRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSE 233
Query: 226 NG---------IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
G I + +V+ YA+ G + A F+LM +N ++W LI+ +++
Sbjct: 234 MGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARH 293
Query: 277 GVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYF 320
+ K F F F S L + + GK Y T
Sbjct: 294 DLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVV 353
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
++D+ G L + + D M K V+W ++ + H + A + ++++L +
Sbjct: 354 SSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGM 413
Query: 381 K 381
K
Sbjct: 414 K 414
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 148/349 (42%), Gaps = 68/349 (19%)
Query: 50 FTYNTMINGGVRCLCVGN--IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
FTY +++ C G + + +H + K D + + +DM+ KCG ++ A+
Sbjct: 485 FTYGSVLKA-----CAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKAD 539
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
+ + ++ +VSWN +IS + + F +
Sbjct: 540 K----------------------IHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRML 577
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
G + YA A++ + G +H++++ E DV++ S L+DMY KC
Sbjct: 578 EMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKC---- 633
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
G+ Q + L FE R+ ++W ++ ++ G+ E+ F
Sbjct: 634 ------------------GNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFE 675
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLS 330
FVS+L C+H G V KG HYF M + ++ CMVD+LG S
Sbjct: 676 SMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRS 735
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
G + EA L+ +MP + VIW LL C H N ++AE R LLQLD
Sbjct: 736 GRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLD 784
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 133/317 (41%), Gaps = 64/317 (20%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+HGL K +S+ +A + +DM+ KC A+ AE++ L F
Sbjct: 404 QVHGLAVKSISMSNICVANAILDMYGKCKAL--AEASDL--------------------F 441
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
M RD VSWN +I+ ++G ETL F + + Y + A A L
Sbjct: 442 DMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALN 501
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H+R++ D FVG+ L+DMY KCG +KAD
Sbjct: 502 TGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGM----------------------IEKAD 539
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSG 299
+ ++ M+SW +IS FS E +FF F + ++L C++
Sbjct: 540 KIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLA 599
Query: 300 PVTKGKHYFTAMAKFT-YTCYFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V GK + K + ++C +VD+ G + +++ + ++ P++ V W A+L
Sbjct: 600 TVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDF-VTWNAML 658
Query: 357 GACCSHYNTKLAELVMR 373
C + + L E ++
Sbjct: 659 ---CGYAHHGLGEEALK 672
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 130/317 (41%), Gaps = 53/317 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + M + +HGLV KF F D + + M+ KC +D +
Sbjct: 191 CGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDS--------------- 235
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F ++PE++ VSW+ MI+ ++ E L F E+ G G+S +YA+
Sbjct: 236 -------LSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASL 288
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSI 232
F + A++ L G LHS + D+ VG+ +DMY KCG + + S+
Sbjct: 289 FRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSL 348
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
Q A++ YA +A +F+L+ + + + +S L
Sbjct: 349 QSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSG------------------AL 390
Query: 293 SGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
+ C+ +G+ K + C ++D+ G L EA L D M +
Sbjct: 391 NACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDA- 449
Query: 350 VIWGALLGACCSHYNTK 366
V W A++ AC + N +
Sbjct: 450 VSWNAIIAACEQNGNEE 466
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 112/278 (40%), Gaps = 51/278 (18%)
Query: 94 IDMHVKCGAVDYAESAFLRM-----------LNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
+ M++KC +DYA F +M ++ C + I R F +MPERD+VS
Sbjct: 91 MQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKF--FYEMPERDVVS 148
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN++IS ++G +++ F+E+ G G A A ++ + + G +H VV
Sbjct: 149 WNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVV 208
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
DV GS L+ MY K C ++ S+ + F + +N
Sbjct: 209 KFGFDCDVVTGSALLGMYAK--CKRLDDSLSV--------------------FSELPEKN 246
Query: 263 MISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFT 309
+SW +I+ Q +E F + SL C+ + GK +
Sbjct: 247 WVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHS 306
Query: 310 AMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMP 344
K + + +D+ G + +A+K++ MP
Sbjct: 307 HALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMP 344
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 30/196 (15%)
Query: 191 LEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKC-----GCNGIES----SIQIGKALV 239
L G H+R++ EP+ FV + L+ MY+KC C + + +++
Sbjct: 65 LNPGKQAHARMIFCGFEPT--TFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSII 122
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
+ YA G A F M R+++SW +IS F Q G K F
Sbjct: 123 SGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRA 182
Query: 288 -FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSG---LLGEAKKLIDEM 343
+L C G + KF + C V LLG+ L ++ + E+
Sbjct: 183 SLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSEL 242
Query: 344 PSKPTCVIWGALLGAC 359
P K V W A++ C
Sbjct: 243 PEK-NWVSWSAMIAGC 257
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 151/354 (42%), Gaps = 80/354 (22%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII----------------RLLI-- 130
+A + I M+ +CG V +A F M P+L W + ++L+
Sbjct: 310 VATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRN 369
Query: 131 ----------------------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+F +MP RD VSW+TMI + +G E+ F EL
Sbjct: 370 HTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLR 429
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
+ + SA + E+G LH V S V V + LIDMY +CG
Sbjct: 430 AEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCG---- 485
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFE-LMSRRNMISWMVLISAFSQAGVLEKP-RFF- 285
+ A L FE + +R+++SW +I+ + G E+ R F
Sbjct: 486 ------------------NVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFN 527
Query: 286 -----------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLS 330
F+SLL CSH+G + +G+ YF+ M + + ++ CMVDL G S
Sbjct: 528 EMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRS 587
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
G L +A I +MP PT ++W LLGAC SH N +LAE V + L +LD G
Sbjct: 588 GKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSG 641
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSAR 185
RLL+ F PE D +NT++ + ++ F+E+ GF S +A A
Sbjct: 227 RLLLCF---PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAA 283
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGK 236
A+ L G +H + + +FV + LI MY +CGC G + ++
Sbjct: 284 ANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWN 343
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------F 287
A+VT G A F+ M RN SW V+++ + +AG LE + F
Sbjct: 344 AVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVS 403
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAK 313
+ +++ G SH+G + YF + +
Sbjct: 404 WSTMIVGFSHNGSFNESFSYFRELLR 429
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 88/226 (38%), Gaps = 55/226 (24%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G + LHG V+K + S+ + IDM+ +CG V A
Sbjct: 446 CSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMAR-------------- 491
Query: 122 KFGIIRLLIMFQKMPE-RDLVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSS 175
++F+ M E R +VSW +MI+ L HG G E + F E+ G S
Sbjct: 492 --------LVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFIS 543
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+LYA + + + + E RV H+EP+++ + GC
Sbjct: 544 LLYACSHAGL--IKEGEGYFSKMKRVYHIEPAVEHY------------GC---------- 579
Query: 236 KALVTMYAEGGSTQKA-DLAFELMSRRNMISWMVLISAFSQAGVLE 280
+V +Y G QKA ++ I W L+ A S G +E
Sbjct: 580 --MVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIE 623
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 153/352 (43%), Gaps = 56/352 (15%)
Query: 63 LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
LC+G +H H + F + + I M+ +CG V+ A + L
Sbjct: 295 LCIGE---QIHSHIVTTGFDISG--IVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349
Query: 123 F-----GIIRLLIM------FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
F G I+L M F + +RD+V+W MI +HG E + F +
Sbjct: 350 FTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQ 409
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+S A S +S+ L G +H V SG I S
Sbjct: 410 RPNSYTLAAMLSVASSLASLGHGKQIHGSAVK----------SGEI------------YS 447
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAGVLEKPRFFF---- 286
+ + AL+TMYA+ GS A AF+L+ R+ +SW +I A +Q G E+ F
Sbjct: 448 VSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETML 507
Query: 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT----CYFVCMVDLLGLSGLL 333
+V + S C+H+G V +G+ YF M ++ CMVDL G +GLL
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
EA++ I++MP +P V WG+LL AC + N L ++ LL L+ + G+
Sbjct: 568 QEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGA 619
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 148/351 (42%), Gaps = 48/351 (13%)
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
RCL G +H + K + S++ S ++M+ KCG A+ F RM+
Sbjct: 157 AATRCLETGK-----KVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKD 211
Query: 118 LFCW--------KFGIIRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE-LW 167
+ W + G + L + F++M ERD+V+WN+MIS + G+ L F + L
Sbjct: 212 ISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLR 271
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ A+ SA A++ L G +HS +V + V + LI MY +CG G
Sbjct: 272 DSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCG--G 329
Query: 228 IESS-------------IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
+E++ I+ AL+ Y + G +A F+ + R++++W +I +
Sbjct: 330 VETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYE 389
Query: 275 QAGVL-------------EKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV 321
Q G+ E+ + ++LS S + GK + K + Y V
Sbjct: 390 QHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVK-SGEIYSV 448
Query: 322 ----CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
++ + +G + A + D + + V W +++ A H + + A
Sbjct: 449 SVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 31/191 (16%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F ++P+RD VSW TMI G + + E+ G S ++ A+ L
Sbjct: 103 FDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCL 162
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
E G +HS +V + G+ ++ + +L+ MYA+ G A
Sbjct: 163 ETGKKVHSFIVKL----------------------GLRGNVSVSNSLLNMYAKCGDPMMA 200
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLE---------KPRFFFFFVSLLSGCSHSGPVT 302
+ F+ M +++ SW +I+ Q G ++ R + S++SG + G
Sbjct: 201 KVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDL 260
Query: 303 KGKHYFTAMAK 313
+ F+ M +
Sbjct: 261 RALDMFSKMLR 271
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 159/371 (42%), Gaps = 76/371 (20%)
Query: 26 ISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVS 85
I ++ L+ DDY T+ +++ C+ + LH L K
Sbjct: 116 IKALNYNLLPDDY------------TFPSLLKA---CVVAKAFQQGKQLHCLAIKLGLNE 160
Query: 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNT 145
+ + + I+M+ C VD A+ F +L P + VS+N
Sbjct: 161 NPYVCPTLINMYAGCNDVDGAQRVFDEILEPCV----------------------VSYNA 198
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
+I+ R E L F +L + + + S+ A + L+ G +H V
Sbjct: 199 IITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKK-- 256
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
NG++ +++ AL+ MYA+ GS A FE MS R+ +
Sbjct: 257 --------------------NGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQA 296
Query: 266 WMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMA 312
W +I A++ G + F F+ LL CSH+G V +G YF +M+
Sbjct: 297 WSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMS 356
Query: 313 K----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ ++ CMVDLLG +GLL EA K IDE+P KPT ++W LL +C SH N +LA
Sbjct: 357 EVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELA 416
Query: 369 ELVMRNLLQLD 379
+ VM +L+LD
Sbjct: 417 KQVMNQILELD 427
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 93/246 (37%), Gaps = 35/246 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ +P+ D+V +N+M +R + + FI+ N+ + + A
Sbjct: 83 LFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKA 142
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-----------GKALV 239
+ G LH + + + + +V LI+MY GCN ++ + ++ A++
Sbjct: 143 FQQGKQLHCLAIKLGLNENPYVCPTLINMY--AGCNDVDGAQRVFDEILEPCVVSYNAII 200
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299
T YA +A F + R + V + +S+LS C+ G
Sbjct: 201 TGYARSSRPNEALSLFRQLQARKLKPNDVTV------------------LSVLSSCALLG 242
Query: 300 PVTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ GK Y Y ++D+ G L A + + M + T W A++
Sbjct: 243 ALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQA-WSAMI 301
Query: 357 GACCSH 362
A H
Sbjct: 302 VAYAMH 307
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 160/355 (45%), Gaps = 48/355 (13%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF---------CW 121
+LH L K + +D + + ++ + K G D A +AF +F
Sbjct: 60 SLHARAL-KSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVT 118
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI-ELWN-----HGFGLSS 175
+ + +F M ERD+VSWNTMI HG+ E++N F SS
Sbjct: 119 RGEVAEARRVFDGMRERDMVSWNTMI-----HGYAVNGEVDLAREVFNGMDDRDAFSWSS 173
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM-YLKCGC--------N 226
M+ A R S LE + + V+ + + V V S DM L G N
Sbjct: 174 MMSAYT-KGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESN 232
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G+E +++G AL+ MYA+ G + + F M +++++W +I + G F
Sbjct: 233 GVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLF 292
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGL 329
F+ +L C+H G V+ GK YF++M+ ++ CMVDLLG
Sbjct: 293 SRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGR 352
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
SG + EAK+LI +MP +P VIW ALLGAC + N ++AE M L LD G
Sbjct: 353 SGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADG 407
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 140/329 (42%), Gaps = 47/329 (14%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---FGIIR---- 127
HG V + +SI IDM++KCG + A F M N ++ W G IR
Sbjct: 356 HGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDV 415
Query: 128 --LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+F ++PER+ V WNTMIS L + + + F E+ G + SA
Sbjct: 416 ESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASAC 475
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ E +H+ + D+ + + L+DM+ +C
Sbjct: 476 GYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARC---------------------- 513
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
G Q A F M+ R++ +W I + G E F FV +L
Sbjct: 514 GDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVL 573
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
+ CSH G V +G H F+ M + ++ CMVDLLG +GLL EA LI MP +P
Sbjct: 574 TACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPND 633
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQL 378
V+WG+LL AC H N ++A + +L
Sbjct: 634 VVWGSLLAACRVHKNVEMATYAAERINEL 662
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 96/250 (38%), Gaps = 53/250 (21%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+DM++KCGA+D A+ +F + +R+LV +NT++S R
Sbjct: 274 VDMYMKCGAIDAAKR----------------------LFDECVDRNLVLYNTILSNYARQ 311
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E L E+ G + +A SA A + DL +G H V+
Sbjct: 312 GLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIR---------- 361
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
NG+E IG ++ MY + G + A F+LMS + ++SW L + F
Sbjct: 362 ------------NGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGF 409
Query: 274 SQAGVLEK---------PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMV 324
+ G +E R F+ +++SG F M V M+
Sbjct: 410 IRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMM 469
Query: 325 DLLGLSGLLG 334
+ G LG
Sbjct: 470 GIASACGYLG 479
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 35/218 (16%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+ +HG V K D I I + +CG +D+
Sbjct: 150 GIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHK---------------------- 187
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ M ER++VSW ++I R E + F E+ G SS+ SA A + D
Sbjct: 188 VFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRD 247
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTM 241
L+ G + + + + L+ + + L+DMY+KCG ++ ++ + +++
Sbjct: 248 LDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSN 307
Query: 242 YAEGGSTQKA----DLAFELMSRRNMISWMVLISAFSQ 275
YA G ++A D + R + ++ + ISA +Q
Sbjct: 308 YARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQ 345
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 39/250 (15%)
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
N++I + G G E + ++ + G + + S + G +H VV
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
M G+E + I L+ YAE G FE MS RN+
Sbjct: 160 M----------------------GLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNV 197
Query: 264 ISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKH---Y 307
+SW LI +++ ++ FF V ++S C+ + G+ Y
Sbjct: 198 VSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAY 257
Query: 308 FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
+ +VD+ G + AK+L DE + V++ +L +
Sbjct: 258 IGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDR-NLVLYNTILSNYARQGLARE 316
Query: 368 AELVMRNLLQ 377
A ++ +LQ
Sbjct: 317 ALAILDEMLQ 326
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 151/343 (44%), Gaps = 68/343 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C GN+K +H +++ ++ ++ + DM+ KCG++ A
Sbjct: 464 CAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHD------------- 510
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F M ++D++SWNTMI T++ E L F E+ + + A
Sbjct: 511 ---------VFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTV-ACI 560
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A AS+ L+ G +H + S D +V + ++DMY+KCG + S+
Sbjct: 561 LPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSL--------- 611
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
F+++ ++++SW V+I+ + G + F F
Sbjct: 612 -------------FDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSF 658
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-------YFVCMVDLLGLSGLLGEAKKLID 341
+S+L CSHSG + +G F M K C ++ CMVDLL +G L +A K I
Sbjct: 659 ISILYACSHSGLLDEGWKIFNIMKK---ECQIEPNLEHYACMVDLLARTGNLVKAHKFIK 715
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
MP KP IWGALL C H++ KLAE V + +L+ + G
Sbjct: 716 AMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTG 758
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 71/330 (21%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
TM+N V C +G + + LH +K + + +DM+ KCG ++ A
Sbjct: 354 TMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSA------ 407
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-- 170
IR+ F++M E+ +VSW +MI+ R G + F E+ + G
Sbjct: 408 -------------IRV---FERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVV 451
Query: 171 ---FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ ++S+L A A + +L+ G +H + + FV + L DMY KC
Sbjct: 452 PDVYAVTSILNACAING-----NLKSGKIVHDYIRENNLETNSFVSNALTDMYAKC---- 502
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
GS + A F M ++++ISW +I +++ + + F
Sbjct: 503 ------------------GSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFA 544
Query: 288 FVS------------LLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGL 332
+ +L C+ + KG+ H + ++ Y +VD+ GL
Sbjct: 545 EMQRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGL 604
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
L A+ L D +P+K V W ++ H
Sbjct: 605 LVLARSLFDMIPNKD-LVSWTVMIAGYGMH 633
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 121/311 (38%), Gaps = 62/311 (19%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
V ++ +HGL+ K F S ++ S I + V A+
Sbjct: 264 VARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQK---------------- 307
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F ++ +RD++SWN+MIS ++G + FI++ G + F A
Sbjct: 308 ------LFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVA 361
Query: 185 RASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A++ L G LHS + +V + L+DMY KCG + S+I++
Sbjct: 362 CANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCG--DLNSAIRV--------- 410
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE---------KPR----FFFFFVS 290
FE M + ++SW +I+ + + G+ + K R + S
Sbjct: 411 -----------FERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTS 459
Query: 291 LLSGCSHSGPVTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+L+ C+ +G + GK Y T + + D+ G + +A + M K
Sbjct: 460 ILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKD 519
Query: 348 TCVIWGALLGA 358
+ W ++G
Sbjct: 520 V-ISWNTMIGG 529
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 40/244 (16%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F K+ E + WN MIS + G E++ F ++ G +S +++ A+V
Sbjct: 206 MVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVA 265
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+E G +H GLI K G N + + +L++ Y G +
Sbjct: 266 RVEEGRQVH----------------GLI---CKLGFNSYNTVVN---SLISFYFVGRKVR 303
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCS 296
A F+ ++ R++ISW +IS + + G+ ++ F V++ C+
Sbjct: 304 CAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACA 363
Query: 297 HSGPVTKGK---HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ G + GK Y A F ++D+ G L A ++ + M K T V W
Sbjct: 364 NIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEK-TVVSW 422
Query: 353 GALL 356
+++
Sbjct: 423 TSMI 426
>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 606
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 193/429 (44%), Gaps = 71/429 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLI------STCLISSIFLQL-------IDDDYRVFCDIGPR 47
+KAC SLK+L + +H I S+ + + + + +D+ VF DIG +
Sbjct: 114 LKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFEDIGTK 173
Query: 48 YLFTYNTMINGGV-RCLCVGNIKMALHL---HGLVKKFYFV----SDESIAKSSIDMHVK 99
++ T+I G R G +++ + G + F F + SI S++ V
Sbjct: 174 NAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSSNLGKQVH 233
Query: 100 CGAVDYAESAFLRMLNP--SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF-- 155
+++ + L ++N ++C +F +M ++D ++WNT+I+ GF
Sbjct: 234 AAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIA-----GFET 288
Query: 156 --GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
+E+LC F ++ + GF + + + +A A++ L G LH ++H
Sbjct: 289 LDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIH---------- 338
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
G+++++++ AL+ MYA+ G+ + F M N++SW ++ +
Sbjct: 339 ------------RGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGY 386
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-- 318
G ++ F F+++LS CSH+G V +G YF M +
Sbjct: 387 GAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPD 446
Query: 319 --YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
+ C+VDLL +G + EA +LI+ MP KP IW ALLGAC + + +L +L
Sbjct: 447 RDIYACVVDLLSRAGRVKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVL 506
Query: 377 QLDVKVFGS 385
++ G+
Sbjct: 507 EMKPNKAGT 515
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 91/245 (37%), Gaps = 39/245 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP RD+++W +MI+ T F + G ++ + A S+
Sbjct: 63 LFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGVKPNAFTVSAVLKACKSLKA 122
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE-GGSTQ 249
L G +H + +K G G SSI + AL+ MYA S
Sbjct: 123 LLCGKLVHG-------------------LAIKIGTQG--SSIYVDNALMDMYATCCDSMD 161
Query: 250 KADLAFELMSRRNMISWMVLISA-------------FSQAGVLEKPRFFFFFVSLLSGCS 296
A L FE + +N +SW LI+ F Q + E F F +S C+
Sbjct: 162 NARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACA 221
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVCM---VDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G GK A+ + M +D+ EAK+L EM K T + W
Sbjct: 222 SIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDT-ITWN 280
Query: 354 ALLGA 358
L+
Sbjct: 281 TLIAG 285
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 184/447 (41%), Gaps = 106/447 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+ C + +++ +++HA +I TC + ++L + + VF ++ R +
Sbjct: 17 LNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNV 76
Query: 50 FTYNTMING------------------------------GVRCLCVG--NIKMALHLHGL 77
++ MI+G V C G ++ +H
Sbjct: 77 VSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSH 136
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ K + + + S +DM+ K G + A +F+ +PE
Sbjct: 137 IFKRNYENHIFVGSSLLDMYAKAGRIHEARG----------------------VFECLPE 174
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VS +IS + G E L F L G + + YA+ +A + + L+ G +
Sbjct: 175 RDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQV 234
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
HS V+ E V + + LIDMY KCG + A F
Sbjct: 235 HSHVLRCELPFYVVLQNSLIDMYSKCG----------------------NLNYARKIFNN 272
Query: 258 MSRRNMISWMVLISAFSQAGV-LEKPRFFFF-------------FVSLLSGCSHSGPVTK 303
M R +ISW ++ +S+ G +E + F F+++LSGCSH G K
Sbjct: 273 MPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDK 332
Query: 304 GKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F M ++ C++DLLG +G + EA +LI +MP +PT IWG+LLGA
Sbjct: 333 GLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGA 392
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H NT + E V LL+++ + G+
Sbjct: 393 CRVHSNTNIGEFVGCRLLEIEPENAGN 419
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 129/267 (48%), Gaps = 40/267 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF--GLSSMLYATAFSARASV 188
+F ++P RD+VSWN+M+S T +G+ + + F ++ G + T A A
Sbjct: 175 VFDEIPHRDIVSWNSMVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQA 234
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
D+ G +H +V LD VG+GLI +Y CG +++ +A+
Sbjct: 235 ADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCG------YVRMARAI---------- 278
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
F+ +S R++I W +I + G+ ++ F F+ LLS C
Sbjct: 279 ------FDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLVGAGLRPDGVVFLCLLSAC 332
Query: 296 SHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
SH+G + +G H F AM + ++ C+VDLLG +G L +A + I MP +P I+
Sbjct: 333 SHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDLLGRAGDLEKAVEFIQSMPIQPGKNIY 392
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
GALLGAC H N +LAEL L LD
Sbjct: 393 GALLGACRIHKNMELAELAAEKLFVLD 419
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 68/349 (19%), Positives = 126/349 (36%), Gaps = 77/349 (22%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F Y ++N C N+K A H V D IA ID + +D+A
Sbjct: 21 FYYTELLN---LCKTTDNVKKA---HAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKV 74
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPE----RDLVSWNTMISILTRHGFGFETLCTFIE 165
F + P +FC +I++ E D + W
Sbjct: 75 FDNLSEPDVFCCNV-VIKVYANADPFGEALKVHDAMRWR--------------------- 112
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
G++ Y F +A + G RV+H + +KCG
Sbjct: 113 ------GITPNYYTYPFVLKACGAE---GASKKGRVIH--------------EHAVKCG- 148
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
++ + +G ALV YA+ + + F+ + R+++SW ++S ++ G ++
Sbjct: 149 --MDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDDAILL 206
Query: 286 FFFV---SLLSGCSHSGPVTKGKHYFTAM---AKFTYTCYFV------------CMVDLL 327
F+ + + G H+ VT + A A + CY V ++ L
Sbjct: 207 FYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLY 266
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
G + A+ + D + S + ++W A++ +H + A + R L+
Sbjct: 267 SNCGYVRMARAIFDRI-SDRSVIVWSAIIRCYGTHGLAQEALALFRQLV 314
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 154/344 (44%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + +H + K F + S + ++ G + A F ++ + W
Sbjct: 120 CSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSW 179
Query: 122 --------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
KFG + + +FQ MPE++++SW TMI R G E L ++ G
Sbjct: 180 NIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIK 239
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
S+ + + SA A + LE G +H+ + E +D +G L DMY+KCG
Sbjct: 240 PDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCG-------- 291
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----- 287
+KA L F + ++ + +W +I + G + +F
Sbjct: 292 --------------EMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKA 337
Query: 288 --------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGE 335
F ++L+ CSH+G +GK F +M+ ++ CMVDL+G +GLL E
Sbjct: 338 GINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKE 397
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A++ I+ MP KP IWGALL AC H + +L + + + L++LD
Sbjct: 398 AREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELD 441
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 103/261 (39%), Gaps = 32/261 (12%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F + + V WNTM+ + L + ++ ++ +S + A +++
Sbjct: 65 VVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALS 124
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM-------- 241
E +H+ ++ L+V+ + L+ +Y G I+S+ + L T
Sbjct: 125 AFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISG--NIQSAHVLFNQLPTRDIVSWNIM 182
Query: 242 ---YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRF 284
Y + G+ A F+ M +N+ISW +I F + G+ + KP
Sbjct: 183 IDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDS 242
Query: 285 FFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLID 341
S LS C+ G + +GK H + + C + D+ G + +A +
Sbjct: 243 ITLSCS-LSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFS 301
Query: 342 EMPSKPTCVIWGALLGACCSH 362
++ K C W A++G H
Sbjct: 302 KLEKKCVCA-WTAIIGGLAIH 321
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 57/213 (26%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVR-------------------------------- 61
+D Y++F + + + ++ TMI G VR
Sbjct: 192 LDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSA 251
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G ++ +H ++K D + DM+VKCG ++ A
Sbjct: 252 CAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKA--------------- 296
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L++F K+ ++ + +W +I L HG G E L F ++ G +S+ +
Sbjct: 297 -------LLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAI 349
Query: 182 FSARASVYDLEWGPHLH---SRVVHMEPSLDVF 211
+A + E G L S V +++PS++ +
Sbjct: 350 LTACSHAGLTEEGKSLFESMSSVYNIKPSMEHY 382
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 143/329 (43%), Gaps = 61/329 (18%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+ + LHG + K + + +DM+ KCG +D A
Sbjct: 377 LNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLA--------------------- 415
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F ++ E+D + WN+MI+ +++G E + F ++ G + + A SA A+
Sbjct: 416 -CRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACAN 474
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ L +G +H ++ D++ S LIDMY KCG +
Sbjct: 475 LPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRV--------------- 519
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
F+ M RN +SW +ISA+ G L++ F F+ ++S
Sbjct: 520 -------FDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISA 572
Query: 295 CSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C H+G V +G Y+ M + ++ C+ D+ G +G L EA + I+ MP P
Sbjct: 573 CGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAG 632
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WG LLGAC H N +LAE+ ++L LD
Sbjct: 633 VWGTLLGACHIHGNVELAEVASKHLFDLD 661
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 171/442 (38%), Gaps = 71/442 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL------------QLIDDDYRVFCDIGPRY 48
+KAC LKS+ + + +H + L +F+ L D Y +F +I +
Sbjct: 65 VKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQY-LFDNIPQKD 123
Query: 49 LFTYNTMINGGVRCLCVGN-IKMALHL-HGLVKK--------FYFVSDESIAKSSIDMH- 97
+N M+NG V+ GN IK+ L + H +K + E++ +H
Sbjct: 124 SVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHG 183
Query: 98 --VKCG-AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG 154
V CG +D + L + C + +F P+ DLVSWN +IS ++G
Sbjct: 184 IAVSCGLELDSPVANTLLAMYSKCQCLQAA----RKLFDTSPQSDLVSWNGIISGYVQNG 239
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
E F + + G S+ +A+ + L+ +H ++ LDVF+ S
Sbjct: 240 LMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKS 299
Query: 215 GLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM-- 263
LID+Y KC C + +++ Y G ++A AF + + M
Sbjct: 300 ALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKP 359
Query: 264 --ISWMVLISAFSQAGVL----------------EKPRFFFFFVSLLSGCSHSGPVTKGK 305
+++ + AF+ L EK + + + C G +
Sbjct: 360 TSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKC---GRLDLAC 416
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT---CVIWGALLGACCS- 361
F + + C+ M+ +G GEA L +M + T CV L AC +
Sbjct: 417 RVFNRITEKDAICWN-SMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANL 475
Query: 362 ---HYNTKLAELVMRNLLQLDV 380
HY ++ L+++ L+ D+
Sbjct: 476 PALHYGKEIHGLMIKGPLRSDL 497
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 151/347 (43%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C + + +H + K D + + IDM+ KCG ++ AE
Sbjct: 415 FTYGSVLKA---CAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEK- 470
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ ++ E+ +VSWN +IS + E TF ++
Sbjct: 471 ---------------------LHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEM 509
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + YAT A++ +E G +H++++ E D ++ S L+DMY KCG
Sbjct: 510 GVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG----- 564
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+ Q L FE R+ ++W ++ ++Q G+ E+ F
Sbjct: 565 -----------------NMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYM 607
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
F+++L C H G V KG HYF +M ++ C+VD++G SG
Sbjct: 608 QLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQ 667
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ +A +LI+ MP + VIW LL C H N ++AE ++LQL+
Sbjct: 668 VSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLE 714
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 137/335 (40%), Gaps = 65/335 (19%)
Query: 56 INGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRML 114
++G R C + L +HGL K S+ +A + +DM+ KCGA
Sbjct: 316 LSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGA------------ 363
Query: 115 NPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174
++ ++F++M RD VSWN +I+ ++G +TL F+ + G
Sbjct: 364 ----------LVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPD 413
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234
Y + A A L G +H+R++ LD FVG LIDMY KCG
Sbjct: 414 EFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGM--------- 464
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS-QAGVLEKPRFF-------- 285
+KA+ + ++ + ++SW +IS FS Q E + F
Sbjct: 465 -------------MEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGV 511
Query: 286 ----FFFVSLLSGCSHSGPVTKGKHYFTAMAK--FTYTCYF-VCMVDLLGLSGLLGEAKK 338
F + ++L C++ V GK + K Y +VD+ G + + +
Sbjct: 512 DPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQL 571
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
+ ++ P++ V W A++ C + L E ++
Sbjct: 572 IFEKAPNRDF-VTWNAMV---CGYAQHGLGEEALK 602
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 133/327 (40%), Gaps = 62/327 (18%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
AL LHG K F +D I +++DM++KC + +
Sbjct: 230 ALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQ--------------------- 268
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY- 189
+F +P +L S+N +I R G E L F L G GL + + A A A +
Sbjct: 269 LFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKG 328
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
DLE G +H + ++ V + ++DMY KCG ALV
Sbjct: 329 DLE-GLQVHGLSMKSLCQSNICVANAILDMYGKCG------------ALV---------- 365
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV-------------SLLSGCS 296
+A L FE M R+ +SW +I+A Q G EK F ++ S+L C+
Sbjct: 366 EACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACA 425
Query: 297 HSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ G + K + + ++D+ G++ +A+KL D + ++ T V W
Sbjct: 426 GWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRL-AEQTVVSWN 484
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDV 380
A++ ++ A+ +L++ V
Sbjct: 485 AIISGFSLQKQSEEAQKTFSKMLEMGV 511
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 113/292 (38%), Gaps = 66/292 (22%)
Query: 131 MFQKMPERDLVSWNTMI-SILTRHGFGFE---------TLCTFIELWNHGFG-----LSS 175
+F MP+RD VSWN M+ R G T C +EL++ G
Sbjct: 99 VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDR 158
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN------GIE 229
+A + +S+ D G +H V M DV GS L+DMY KC G+E
Sbjct: 159 TTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLE 218
Query: 230 -------------------------SSIQIGKALVTMYAEGGSTQK-ADLAFELMSRRNM 263
+ + IG A + MY + + ++ F + N+
Sbjct: 219 LFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNL 278
Query: 264 ISWMVLISAFSQAG----------VLEKPRFFFFFVSLLSGCSHSGPVTKG-----KHYF 308
S+ +I ++++ +L+K VS LSG + V KG + +
Sbjct: 279 QSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVS-LSGAXRACAVIKGDLEGLQVHG 337
Query: 309 TAMAKF--TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+M + C ++D+ G G L EA + +EM S+ V W A++ A
Sbjct: 338 LSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDA-VSWNAIIAA 388
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/445 (24%), Positives = 183/445 (41%), Gaps = 104/445 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+KAC + + R++H+ L+ + S +F+ L++D F + + L
Sbjct: 366 LKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 425
Query: 50 FTYNTMING----------------------GVRCLCVGNI----------KMALHLHGL 77
+N +I+G G + I + +HGL
Sbjct: 426 IAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGL 485
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K F SD + S ID + KC V+ AE +F++
Sbjct: 486 SVKSGFHSDIYVVNSLIDSYGKCSHVEDAER----------------------IFEECTI 523
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
DLVS+ +MI+ ++G G E L F+E+ + + ++ +A A++ E G L
Sbjct: 524 GDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQL 583
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H ++ LD+F G+ L++MY KC GS A AF
Sbjct: 584 HVHILKYGFVLDIFAGNSLVNMYAKC----------------------GSIDDAGRAFSE 621
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
++ R ++SW +I +Q G + F VS+L C+H+G VT+
Sbjct: 622 LTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEA 681
Query: 305 KHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
K YF +M + ++ CM+DLLG +G + EA +L+++MP + +WGALLGA
Sbjct: 682 KLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAAR 741
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
H + +L L L+ + G+
Sbjct: 742 IHKDVELGRRAAEMLFILEPEKSGT 766
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 144/362 (39%), Gaps = 74/362 (20%)
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
+FT ++ + C +G ++ LH + K SD ++ +DM+ KC ++ A
Sbjct: 359 IFTLSSALKA---CAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARM 415
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
AF +PE+DL++WN +IS +++ E L F+E+
Sbjct: 416 AF----------------------NLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK 453
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
G G + +T + A + + +H V D++V + LID Y KC
Sbjct: 454 EGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKC----- 508
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF- 287
+ A+ FE + +++S+ +I+A++Q G E+ F
Sbjct: 509 -----------------SHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLE 551
Query: 288 ----------FV--SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGL 332
FV SLL+ C++ +GK + K+ + +V++ G
Sbjct: 552 MQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGS 611
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSH---------YNTKLAELVMRNLLQLDVKVF 383
+ +A + E+ + V W A++G H +N L E V N + L V V
Sbjct: 612 IDDAGRAFSELTER-GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITL-VSVL 669
Query: 384 GS 385
G+
Sbjct: 670 GA 671
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 127/327 (38%), Gaps = 67/327 (20%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
+C +++ L +H + K D SI I+++ KC
Sbjct: 65 QCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCR------------------- 105
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
FG R L+ + E DLVSW+ +IS ++G G L F E+ G + +++
Sbjct: 106 -NFGYARKLV--DESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSS 162
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A + V DL G +H VV DVFV + L+ MY KC K L
Sbjct: 163 VLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKC------DEFLDSKRL-- 214
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ----------------AGVLEKPRF 284
F+ + RN++SW L S + Q +G+ KP
Sbjct: 215 --------------FDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGI--KPN- 257
Query: 285 FFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLID 341
F S+++ C+ ++GK + K Y +VD+ G L +A + +
Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLA 368
++ +P V W A++ C H + + A
Sbjct: 318 KI-KQPDIVSWNAVIAGCVLHEHHEQA 343
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 52/238 (21%)
Query: 40 VFCDIGPRYLFTYNTMING--GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
V I P F+ ++M+N G+R G I +HG + K + D A + +DM+
Sbjct: 250 VLSGIKPNE-FSLSSMVNACTGLRDSSRGKI-----IHGYLIKLGYDWDPFSANALVDMY 303
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
K G D A++ + +F+K+ + D+VSWN +I+ H
Sbjct: 304 AKVG--DLADA--------------------ISVFEKIKQPDIVSWNAVIAGCVLHEHHE 341
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
+ L ++ G + ++A A A + E G LHS ++ M+ D+FV GL+
Sbjct: 342 QALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLV 401
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
DMY KC + A +AF L+ +++I+W +IS +SQ
Sbjct: 402 DMYSKCDL----------------------LEDARMAFNLLPEKDLIAWNAIISGYSQ 437
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/331 (19%), Positives = 132/331 (39%), Gaps = 64/331 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+++++ C V ++++ +HG+V F D +A + + M+ KC ++ +S
Sbjct: 158 FTFSSVLKA---CSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCD--EFLDSK 212
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
L F ++PER++VSWN + S + F E + F E+
Sbjct: 213 RL--------------------FDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLS 252
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + ++ +A + D G +H ++ + D F + L+DMY K G +
Sbjct: 253 GIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG--DLA 310
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS----------AFSQAGVL 279
+I + FE + + +++SW +I+ A G +
Sbjct: 311 DAISV--------------------FEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350
Query: 280 EKPRF---FFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLL 333
++ F S L C+ G G+ +++ K V +VD+ LL
Sbjct: 351 KRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLL 410
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
+A+ + +P K + W A++ ++
Sbjct: 411 EDARMAFNLLPEK-DLIAWNAIISGYSQYWE 440
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/436 (24%), Positives = 194/436 (44%), Gaps = 102/436 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID-----DDY----RVFCDIGPRYL 49
+KAC + R++H ++ L++ ++Q LI D+ +VF ++ R +
Sbjct: 112 LKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDV 171
Query: 50 FTYNTMINGGVR-----------------------------CLCVGNIKMALHLHGLVKK 80
++N++I+G ++ C G++ +HG++++
Sbjct: 172 VSWNSLISGFMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIER 231
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
+ V + + + +DM+VK G A++ +F ++P RD+
Sbjct: 232 RFKV-NLVLGNAMLDMYVKNGCFYEAKN----------------------IFDELPTRDI 268
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSW MI+ L + ++L F + G +++ + SA AS+ L++G +H
Sbjct: 269 VSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEY 328
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
+ D+ +G+ ++DMY KCGC IE +++I F MS+
Sbjct: 329 INQRGIKWDIHIGTAIVDMYAKCGC--IEMALKI--------------------FYSMSQ 366
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHY 307
RN +W L+ + G++ + F F+++L+ C H G V +G+ Y
Sbjct: 367 RNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKY 426
Query: 308 FTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
F M+K ++ CM+DL +GLL EA +L MP KP +IWG LL AC +
Sbjct: 427 FDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVG 486
Query: 364 NTKLAELVMRNLLQLD 379
N +L+ + +L+LD
Sbjct: 487 NIELSHRIQDYILELD 502
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/416 (20%), Positives = 156/416 (37%), Gaps = 110/416 (26%)
Query: 8 KSLPIARKIHAQLISTCLISSIFL--QLID--DDYRVFCDIGPRYL---------FTYNT 54
K+L I R+IHAQL+++ L+ F+ ++++ ++ + D YL F +N+
Sbjct: 16 KNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNS 75
Query: 55 MINGGV--------------------------------RCLCVGNIKMALHLHGLVKKFY 82
+ING V C + +HG+V K
Sbjct: 76 LINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLG 135
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
++D + S I + CG A F ML RD+VS
Sbjct: 136 LLADHYVQNSLIRCYGACGDFSCAGKVFDEML----------------------VRDVVS 173
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN++IS + G E + F + + +++++ A AR DL G +H V+
Sbjct: 174 WNSLISGFMKAGHFDEAISVFFRM-DVEPSMTTLVSVLAACARNG--DLCTGKGIHG-VI 229
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+++ +G+ ++DMY+K GC +A F+ + R+
Sbjct: 230 ERRFKVNLVLGNAMLDMYVKNGC----------------------FYEAKNIFDELPTRD 267
Query: 263 MISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK--HY 307
++SW ++I+ Q+ ++ F S+LS C+ G + G H
Sbjct: 268 IVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHE 327
Query: 308 FTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ + + +VD+ G + A K+ M + T W ALL H
Sbjct: 328 YINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNT-FTWNALLCGLAMH 382
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 152/353 (43%), Gaps = 64/353 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT +T++ C ++K L +HG + F SD + S IDM+ C DY+
Sbjct: 171 FTLSTVLPIFAEC---ADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYS--- 224
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ +F +P RD + WN++++ ++G E L F +
Sbjct: 225 -------------------VKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQA 265
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + +++ ++ L +G LH+ V+ C G E
Sbjct: 266 GVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI----------------------CGGFE 303
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
++ I +L+ MY + G A F+ MS +++SW +I ++ G + F
Sbjct: 304 DNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERM 363
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
F+++L+ CSH+G V KG YF +M+ +F + D LG +G
Sbjct: 364 ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGE 423
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
L EA I +M KPT +W LL AC H NT LAE V + +++L+ + GS
Sbjct: 424 LDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGS 476
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 124/313 (39%), Gaps = 46/313 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK--CGAVDYAESAFLRMLNPSLF 119
C +G + LH L + +D A + ++++ K C +D A + + S
Sbjct: 60 CAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSST- 118
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
F +R + F +M ERD+VSWNT++ G E L ++ GF S +
Sbjct: 119 --AFESVRKV--FDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLS 174
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
T A D++ G +H DVFVGS LIDMY C + S+++
Sbjct: 175 TVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMY--ANCTRTDYSVKV----- 227
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
F+ + R+ I W L++ +Q G +E+ F
Sbjct: 228 ---------------FDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPV 272
Query: 287 FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEM 343
F SL+ C + + GK H + F + ++D+ G + A + D+M
Sbjct: 273 TFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKM 332
Query: 344 PSKPTCVIWGALL 356
S P V W A++
Sbjct: 333 -SSPDVVSWTAMI 344
>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
Length = 1038
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 150/347 (43%), Gaps = 62/347 (17%)
Query: 51 TYNTMINGGVRCLCVGNI-KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
Y T+++ CL G++ + LH + F SDE + S I M+ KCG + ++
Sbjct: 563 NYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQD- 621
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F + R +++WN +++ HG G E L ++ +
Sbjct: 622 ---------------------LFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSF 660
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G L ++ SA A + LE G LH V + LD F+ + DMY KCG
Sbjct: 661 GLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCG----- 715
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
+IG+ + + R++ SW +LISA + G E+ F
Sbjct: 716 ---EIGEVVKMLPPS--------------VNRSLPSWNILISALGRHGYFEEVCETFHEM 758
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
FVSLL+ CSH G V +G Y+ +AK + +C++DLLG SG
Sbjct: 759 LEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGR 818
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EA+ I +MP KP ++W +LL +C H + NL +L+
Sbjct: 819 LAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLE 865
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/406 (21%), Positives = 172/406 (42%), Gaps = 73/406 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLIS---------SIFLQLIDDDYR--VFCDIGPRYL 49
+ +CG LK + R+I Q+I + L S S+F + + DY +F I R
Sbjct: 268 ISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDT 327
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE-- 107
++N+++ + G+I+ + + L+++F+ DE + + + G VD+ +
Sbjct: 328 ISWNSIVAAYAQN---GHIEESSRIFNLMRRFH---DEVNSTTVSTLLSVLGDVDHQKWG 381
Query: 108 ----SAFLRMLNPSLFCWKFGIIRLL----------IMFQKMPERDLVSWNTMISILTRH 153
++M S+ C ++R+ ++F++MP +DL+SWN++++
Sbjct: 382 RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVND 441
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G + L + G ++ + + +A +A S + G LH VV
Sbjct: 442 GRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVV---------- 491
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
SGL D + IG ALV+MY + G + M RR++++W LI +
Sbjct: 492 SGLFDNQI------------IGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGY 539
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGP-VTKGK--HYFTAMAKFTYT 317
++ +K F VS+LS C G + +GK H + A F
Sbjct: 540 AENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESD 599
Query: 318 CYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ ++ + G L ++ L + + ++ + + W A+L A H
Sbjct: 600 EHVKNSLITMYAKCGDLSSSQDLFNGLDNR-SIITWNAILAANAHH 644
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 138/335 (41%), Gaps = 53/335 (15%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY--AESA 109
Y +M GV C ++ + + GL+K DES+ + I +K G E++
Sbjct: 249 YKSMRGEGVEC-NENSMSLVISSCGLLK------DESLGRQIIGQVIKSGLESKLAVENS 301
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ S+F + +F ++ ERD +SWN++++ ++G E+ F +
Sbjct: 302 LI-----SMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRF 356
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
++S +T S V +WG +H VV M G +
Sbjct: 357 HDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKM----------------------GFD 394
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------------ 277
S + + L+ MYA G +++ADL F+ M +++ISW L+++F G
Sbjct: 395 SVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSM 454
Query: 278 -VLEKPRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAK-FTYTCYFVCMVDLLGLSGLL 333
K + F S L+ C KG+ H ++ F +V + G G +
Sbjct: 455 IRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGM 514
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+++++ +MP + V W AL+G + + A
Sbjct: 515 STSRRVLLQMPRRDV-VAWNALIGGYAENEDPDKA 548
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/367 (19%), Positives = 144/367 (39%), Gaps = 78/367 (21%)
Query: 38 YRVFCDIGP-RYLF---------TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE 87
Y F + P RYLF ++NTM++G VR + L+L G+ + F + D
Sbjct: 103 YTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVR--------VGLYLEGM-EFFQKMCDL 153
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM---------------- 131
I SS + A + S F + F K G++ + +
Sbjct: 154 GIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 213
Query: 132 ----FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
F++MP+R++VSW +++ + G E + + + G + + S+
Sbjct: 214 SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGL 273
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ D G + +V+ +G+ES + + +L++M+ G+
Sbjct: 274 LKDESLGRQIIGQVIK----------------------SGLESKLAVENSLISMFGNMGN 311
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVT----- 302
A+ F +S R+ ISW +++A++Q G +E+ F + +S V+
Sbjct: 312 VDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSV 371
Query: 303 ----------KGKHYFTAMAKF-TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
+G H F + C ++ + +G EA + +MP+K +
Sbjct: 372 LGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKD-LIS 430
Query: 352 WGALLGA 358
W +L+ +
Sbjct: 431 WNSLMAS 437
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/453 (24%), Positives = 192/453 (42%), Gaps = 98/453 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTC--LISSIFLQLIDDDY---------RVFCDIGPRYL 49
+KA G L+ + K+ ++ T L + ++ LID Y ++F ++ R
Sbjct: 250 LKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDS 309
Query: 50 FTYNTMINGGVRC---------------------------------LCVGNIKMALHLHG 76
++N MI+G VRC + N+++ +H
Sbjct: 310 VSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN 369
Query: 77 LVKK-FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR 127
V+K F + I + +DM+ KCG ++ A + F M ++ CW G +R
Sbjct: 370 YVRKELGFTT--RIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLR 427
Query: 128 -LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+F K P RD+V W MI+ + + + F E+ T + A
Sbjct: 428 EARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCA 487
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ LE G +H + ++DV VG+ LI+MY KCGC ++ S++I
Sbjct: 488 QLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGC--VDKSLEI------------ 533
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLS 293
F + ++ SW +I + G E R F F+ +LS
Sbjct: 534 --------FYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLS 585
Query: 294 GCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSH G V +G+ +F +M K ++ C++DLLG +GLL EA++LI E+P +
Sbjct: 586 ACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCE 645
Query: 350 VI---WGALLGACCSHYNTKLAELVMRNLLQLD 379
++ +GALL AC H N + E + + L ++
Sbjct: 646 IVVPLYGALLSACRIHNNVDMGERLAKKLENIE 678
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 99/275 (36%), Gaps = 63/275 (22%)
Query: 101 GAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
G + YAE F + +PSLF + N M+ + + G + L
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVY----------------------NVMVKMYAKRGILRKVL 228
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F +L G Y A + D+ G + +V LD +V + LIDMY
Sbjct: 229 LLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMY 288
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+ S+++ K L F+ M+ R+ +SW V+IS + + E
Sbjct: 289 YEL------SNVENAKKL----------------FDEMTTRDSVSWNVMISGYVRCRRFE 326
Query: 281 KPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCM 323
F VS LS C+ + G + K FT T +
Sbjct: 327 DAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT-TRIDNAL 385
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+D+ G L A+ + DEM K + W +++
Sbjct: 386 LDMYAKCGCLNIARNIFDEMSMK-NVICWTSMISG 419
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/414 (26%), Positives = 183/414 (44%), Gaps = 62/414 (14%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFLQLI---------DDDYRVFCDIGPRYLFTYNT 54
CGSL + A +I Q + +I +F +I ++ +R+F + R ++
Sbjct: 51 CGSLNKMAYANRIFKQTQNPTII--LFNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEY 108
Query: 55 MINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
+ ++ C +G +++ +H V F +I I+++ CG ++ AE F M
Sbjct: 109 TLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEM 168
Query: 114 LNPSLFCW--------KFGIIRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
+ W K G + + L +F++M +R +VSWN MIS L + E L F
Sbjct: 169 YQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFH 228
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
++ + GF T A + ++ G +HS SGL +
Sbjct: 229 DMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYA----------KSSGLYRDF---- 274
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE---- 280
+ +G ALV Y + G + A F+ M R+N+ISW LIS + G E
Sbjct: 275 -------VAVGNALVDFYNKSGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVE 327
Query: 281 ----------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT----CYFVCMVDL 326
+P FV +LS C+H+G +G+ +M + ++ CMVDL
Sbjct: 328 LLEEMMNEGVRPN-DATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDL 386
Query: 327 LGLSGLLGEAKKLIDEMP-SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LG SG + EA LI MP P +WG+LL AC +H + +LA L ++ L+ L+
Sbjct: 387 LGRSGCVREAYDLIRIMPGGAPNAALWGSLLSACRTHGDVELAHLAVKELIDLE 440
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 152/338 (44%), Gaps = 68/338 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C ++ +H +KK S+ ++ + ++M+ KCG+++ A
Sbjct: 370 CACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEAN-------------- 415
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++F ++P +++VSWNTMI +++ E L F+++ + A
Sbjct: 416 --------LIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACV 466
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A + LE G +H ++ D+ V L+DMY+KCG L+ +
Sbjct: 467 LPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCG-------------LLVL 513
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRFFFF------F 288
A F+++ +++MI W V+I+ + G EK R F
Sbjct: 514 ---------AQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSF 564
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-------YFVCMVDLLGLSGLLGEAKKLID 341
S+L C+HSG + +G F +M C ++ CMVDLL SG L A K I+
Sbjct: 565 TSILYACTHSGLLKEGWKLFDSMKS---ECNIEPKLEHYACMVDLLIRSGNLSRAYKFIE 621
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP KP IWGALL C H++ +LAE V ++ +L+
Sbjct: 622 TMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELE 659
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 121/307 (39%), Gaps = 61/307 (19%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
++ +HG V K F S ++ S I + KCG V+ A
Sbjct: 174 VRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESAR-------------------- 213
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
I+F ++ +RD+VSWN+MIS T +GF L FI++ N G + S A A+
Sbjct: 214 --ILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACAN 271
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
V +L G LH+ V S V + L+DMY KC G+
Sbjct: 272 VGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKC----------------------GN 309
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSG 294
A+ F M ++SW +I+A + G+ E F + S++
Sbjct: 310 LNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHA 369
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C+ S + KG+ + K ++++ G + EA + ++P K V
Sbjct: 370 CACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVK-NIVS 428
Query: 352 WGALLGA 358
W ++G
Sbjct: 429 WNTMIGG 435
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 116/314 (36%), Gaps = 63/314 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +H ++ DE + + M+V CG + F +LN +F
Sbjct: 67 CAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFL- 125
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
WN ++S + G E++ F ++ G S +
Sbjct: 126 ---------------------WNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCV 164
Query: 182 FSARASVYDLEWGPHLHSRVVHME-PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A+ + +H V+ + S + V S LI Y KC
Sbjct: 165 LKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNS-LIAAYFKC----------------- 206
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
G + A + F+ +S R+++SW +IS + G FF
Sbjct: 207 -----GEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSAT 261
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMP 344
V++L C++ G +T G+ H + A F+ F ++D+ G L A ++ +M
Sbjct: 262 LVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKM- 320
Query: 345 SKPTCVIWGALLGA 358
+ T V W +++ A
Sbjct: 321 GETTIVSWTSIIAA 334
>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
Length = 773
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 158/367 (43%), Gaps = 67/367 (18%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+ D Y +C +++++ C + +++ H K D S+A
Sbjct: 415 LRDKYEFWC--------VADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVL 466
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
I M+ +CG D+A C FG+ +L + D+V+WNT+IS
Sbjct: 467 IGMYGRCGKFDHA-------------CKIFGLAKL--------KGDVVTWNTLISSYAHL 505
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G + + ++ G +S T SA A++ LE G +HS V M DV +
Sbjct: 506 GHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSIN 565
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+ LIDMY KCG GI I F+ M + ++++W V+IS +
Sbjct: 566 TALIDMYAKCGQLGIARRI----------------------FDSMLQHDVVAWNVMISGY 603
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-- 318
G ++ F F+++LS HSG + +G+ FT M K++
Sbjct: 604 GMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGKYSLEPNL 663
Query: 319 -YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
++ CMVDLLG SG L EA+ ++ MP +P IWG LL AC H N ++ + +
Sbjct: 664 KHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKKAFA 723
Query: 378 LDVKVFG 384
D + G
Sbjct: 724 SDPENEG 730
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 103/265 (38%), Gaps = 50/265 (18%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+ D +VF ++ R + + +I+G CV N + L LV+ D S+ +S
Sbjct: 166 VRDAVKVFEEMPERDVVAWTAVISG-----CVRNGESGEGLRYLVEMVRLAGDGSVRPNS 220
Query: 94 IDMHV---KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI------------------MF 132
M CG +D S R L+ + G ++I +F
Sbjct: 221 RTMESGLEACGVLDELNSG--RCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALF 278
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++PE+D+VSW ++I I R G E + F ++ G +L + S + ++
Sbjct: 279 LELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVH 338
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G H+ + S+ IG AL++MY + A
Sbjct: 339 GGKTFHAVITK----------------------RNFGDSVLIGNALISMYGKFEMVDSAG 376
Query: 253 LAFELMSRRNMISWMVLISAFSQAG 277
F L+ +R+ SW +++ + +AG
Sbjct: 377 RVFRLLHQRDADSWNLMVVGYCKAG 401
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 39/203 (19%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL----WNHGFGLSSMLYATAFSARA 186
+F++MPERD+V+W +IS R+G E L +E+ + +S + A
Sbjct: 172 VFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACG 231
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ +L G LH VV + GI S + AL +MY++
Sbjct: 232 VLDELNSGRCLHGYVVKV----------------------GIGDSPMVISALFSMYSKCY 269
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVS-LLS 293
ST+ A F + ++++SW LI + + G++ + F VS +LS
Sbjct: 270 STEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLS 329
Query: 294 GCSHSGPVTKGKHYFTAMAKFTY 316
G ++G V GK + + K +
Sbjct: 330 GLGNNGNVHGGKTFHAVITKRNF 352
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 183/417 (43%), Gaps = 68/417 (16%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGP--RYLFTYNTMINGGV- 60
CGSL + A ++ + + + ++ +F +I + + +GP L +++M + G+
Sbjct: 46 CGSLSNSDYANRVFSHIQNPNVL--VFNAMI----KCYSLVGPPLESLSFFSSMKSRGIW 99
Query: 61 -----------RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
C + +++ +HG + + F I ++++ G + A+
Sbjct: 100 ADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKV 159
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M ++ W + R L +F++M ER +VSWN+MIS L++ G E L
Sbjct: 160 FDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREAL 219
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F E+ + GF T AS+ L+ G +HS SGL +
Sbjct: 220 ELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAE----------SSGLFKDF 269
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
I +G ALV Y + G + A F M RRN++SW LIS + G E
Sbjct: 270 -----------ITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGE 318
Query: 281 KPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFT-AMAKF---TYTCYFVC 322
F F+ +L+ CS++G V +G+ F M +F T ++
Sbjct: 319 FGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGA 378
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MVDL+ SG + EA K + MP +WG+LL AC SH + KLAE+ L++++
Sbjct: 379 MVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVAAMELVKIE 435
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 151/347 (43%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C + + +H + K D + + IDM+ KCG ++ AE
Sbjct: 478 FTYGSVLKA---CAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEK- 533
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ ++ E+ +VSWN +IS + E TF ++
Sbjct: 534 ---------------------LHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEM 572
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + YAT A++ +E G +H++++ E D ++ S L+DMY KCG
Sbjct: 573 GVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG----- 627
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+ Q L FE R+ ++W ++ ++Q G+ E+ F
Sbjct: 628 -----------------NMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYM 670
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
F+++L C H G V KG HYF +M ++ C+VD++G SG
Sbjct: 671 QLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQ 730
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ +A +LI+ MP + VIW LL C H N ++AE ++LQL+
Sbjct: 731 VSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLE 777
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/431 (21%), Positives = 164/431 (38%), Gaps = 107/431 (24%)
Query: 2 KACGSLKSLPIARKIHAQLIST-----CLISSIFLQL------IDDDYRVFCDIGPRYLF 50
++C L +L + ++H + T +I + L + + D ++F + L
Sbjct: 283 RSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQ 342
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
+YN +I G R C + L +HGL
Sbjct: 343 SYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLS 402
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
K S+ +A + +DM+ KCGA ++ ++F++M R
Sbjct: 403 MKSLCQSNICVANAILDMYGKCGA----------------------LVEACLVFEEMVSR 440
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
D VSWN +I+ ++G +TL F+ + G Y + A A L G +H
Sbjct: 441 DAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIH 500
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+R++ LD FVG LIDMY KCG +KA+ + +
Sbjct: 501 NRIIKSRLGLDSFVGIALIDMYSKCGM----------------------MEKAEKLHDRL 538
Query: 259 SRRNMISWMVLISAFS-QAGVLEKPRFF------------FFFVSLLSGCSHSGPVTKGK 305
+ + ++SW +IS FS Q E + F F + ++L C++ V GK
Sbjct: 539 AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGK 598
Query: 306 HYFTAMAK--FTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ K Y +VD+ G + + + + ++ P++ V W A++ C +
Sbjct: 599 QIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNR-DFVTWNAMV---CGY 654
Query: 363 YNTKLAELVMR 373
L E ++
Sbjct: 655 AQHGLGEEALK 665
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 63/336 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ LHG K F +D I +++DM++KC + A+
Sbjct: 285 CAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQK------------- 331
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +P +L S+N +I R G E L F L G GL + + A
Sbjct: 332 ---------LFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGA 382
Query: 182 FSARASVY-DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
F A A + DLE G +H + ++ V + ++DMY KCG ALV
Sbjct: 383 FRACAVIKGDLE-GLQVHGLSMKSLCQSNICVANAILDMYGKCG------------ALV- 428
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV----------- 289
+A L FE M R+ +SW +I+A Q G EK F ++
Sbjct: 429 ---------EACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFT 479
Query: 290 --SLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
S+L C+ + G + K + + ++D+ G++ +A+KL D +
Sbjct: 480 YGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRL- 538
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
++ T V W A++ ++ A+ +L++ V
Sbjct: 539 AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGV 574
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 40/226 (17%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
+ LC G A + K FV++ I M++KC +++A F M
Sbjct: 56 KALCPGKQAHARMILTEFKPTVFVTN-----CLIQMYIKCSDLEFAFKVFDGMPQRDTVS 110
Query: 121 WK-----------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
W G+ + L F MPERD+VSWN++IS +G + + F+++
Sbjct: 111 WNAMLFGYAGRGDIGVAQKL--FDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRM 168
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G +A + +S+ D G +H V M DV GS L+DMY K C ++
Sbjct: 169 GTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAK--CKKLD 226
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
SIQ F M +N +SW +I+ Q
Sbjct: 227 CSIQF--------------------FHSMPEKNWVSWSAIIAGCVQ 252
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 123/298 (41%), Gaps = 49/298 (16%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+ +HGL K F D + +DM+ KC +D + +
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCS----------------------IQ 230
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
F MPE++ VSW+ +I+ ++ L F E+ G G+S +A+ F + A +
Sbjct: 231 FFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSA 290
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIES-SIQIGKALVTM 241
L G LH + + DV +G+ +DMY+KC N + + ++Q A++
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVG 350
Query: 242 YAEGGSTQKADLAFELMSRRNM-ISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGP 300
YA +A F L+ + + + + L AF V++ L G G
Sbjct: 351 YARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGD---------LEGLQVHGL 401
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
K ++ + + C ++D+ G G L EA + +EM S+ V W A++ A
Sbjct: 402 SMK------SLCQ-SNICVANAILDMYGKCGALVEACLVFEEMVSRDA-VSWNAIIAA 451
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 74/198 (37%), Gaps = 26/198 (13%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIESSIQIG-KALVTMYAE 244
G H+R++ E VFV + LI MY+KC +G+ + A++ YA
Sbjct: 61 GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSL 291
G A F+ M R+++SW LIS + G K F F +
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
L CS G K + C V ++D+ L + + MP K
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK-N 239
Query: 349 CVIWGALLGACCSHYNTK 366
V W A++ C + + +
Sbjct: 240 WVSWSAIIAGCVQNDDLR 257
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 156/336 (46%), Gaps = 55/336 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + M + LH L ++ + +A S IDM+ KC ++ A
Sbjct: 347 CASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKA--------------- 391
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F ++P++D++SW ++I+ L + FE L F ++ +S+ +A
Sbjct: 392 -------LEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISA 443
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIESSIQ 233
SA A V L G +H+ + D F+ + ++D+Y++CG N E +
Sbjct: 444 LSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFNLNEKDVG 503
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLS 293
L+T YA+ G K + EL R ++ S + V F+SLL
Sbjct: 504 AWNILLTGYAQKG---KGAMVMELFKR-------MVESEINPDDVT--------FISLLC 545
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
CS SG VT+G YF M K Y ++ C+VDLLG +G L EA + I+ MP KP
Sbjct: 546 ACSRSGMVTEGLEYFQRM-KVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPD 604
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWGALL AC H + L EL +++ + D + G
Sbjct: 605 PAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIG 640
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 95/248 (38%), Gaps = 39/248 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M ERDL SWN ++ T+ GF E LC + + G + + + A D
Sbjct: 91 VFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMD 150
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H+ VV + +DV V + LI MY+KC G
Sbjct: 151 LVRGREVHAHVVRFDFDMDVDVVNALITMYVKC----------------------GDVVS 188
Query: 251 ADLAFELMSRRNMISWMVLISA-FSQAGVLEKPRFFF------------FFVSLLSGCSH 297
A + F+ M R+ ISW +IS F LE FF S++S C
Sbjct: 189 ARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACEL 248
Query: 298 SGPVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G G + + + Y + ++ + G EA+ + M + V W
Sbjct: 249 LGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDV-VSWTT 307
Query: 355 LLGACCSH 362
++ C +
Sbjct: 308 IISGCVDN 315
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 139/387 (35%), Gaps = 98/387 (25%)
Query: 28 SIFLQLID--DDYRVFCDIGPRYLFTYNTMING--------------------GVR---- 61
S+F++ D + + VF +G R LF++N ++ G G+R
Sbjct: 77 SMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVY 136
Query: 62 --------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
C ++ +H V +F F D + + I M+VKCG V A RM
Sbjct: 137 TFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSA-----RM 191
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
L F KMP RD +SWN MIS + E L F +
Sbjct: 192 L-----------------FDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDP 234
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
M + SA + D G LHS VV + +I
Sbjct: 235 DLMTMTSVISACELLGDERLGTQLHSYVVR----------------------TAYDGNIS 272
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+ +L+ MY G ++A+ F M R+++SW +IS + +K +
Sbjct: 273 VYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITG 332
Query: 287 ------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAK 337
S+LS C+ G + G + + Y V ++D+ + +A
Sbjct: 333 TMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKAL 392
Query: 338 KLIDEMPSKP----TCVIWGALLGACC 360
++ ++P K T VI G + C
Sbjct: 393 EIFHQIPDKDVISWTSVINGLRINNRC 419
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 105/270 (38%), Gaps = 59/270 (21%)
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
L T ++I+ C +G+ ++ LH V + + + S+ S I M++ G AES
Sbjct: 236 LMTMTSVISA---CELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAES 292
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+F M RD+VSW T+IS + + L T+ +
Sbjct: 293 ----------------------VFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEI 330
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
G + A+ SA AS+ L+ G LH L V V + LIDMY K C I
Sbjct: 331 TGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSK--CKRI 388
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA------------FSQA 276
E +++I F + +++ISW +I+ F +
Sbjct: 389 EKALEI--------------------FHQIPDKDVISWTSVINGLRINNRCFEALIFFRK 428
Query: 277 GVLEKPRFFFFFVSLLSGCSHSGPVTKGKH 306
+L+ +S LS C+ G + GK
Sbjct: 429 MILKSKPNSVTLISALSACARVGALMCGKE 458
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--- 287
S+++G AL++M+ G A F M R++ SW VL+ +++AG ++ +
Sbjct: 68 SVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRIL 127
Query: 288 ----------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE-- 335
F S+L C+ + + +G+ + +F + + L+ + G+
Sbjct: 128 WAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVV 187
Query: 336 -AKKLIDEMPSKPTCVIWGALL 356
A+ L D+MP++ + W A++
Sbjct: 188 SARMLFDKMPTRDR-ISWNAMI 208
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 121/433 (27%), Positives = 167/433 (38%), Gaps = 113/433 (26%)
Query: 38 YRVFCDIGPRYLFTYNTMING------------------------GVR------------ 61
Y VF I LF YNT+I G GVR
Sbjct: 62 YLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRA 121
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +H V K SD + + I MH CG + A + F W
Sbjct: 122 CTAMGAGGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAW 181
Query: 122 KFGII-----------RLL-----------------------------IMFQKMPERDLV 141
I R L ++F ++PERD+V
Sbjct: 182 SAMITGCARRGDIVAARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVV 241
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
SWN MIS R G + F ++ G + + SA A D++ G LHS
Sbjct: 242 SWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHS-- 299
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
L +M+L+ G ++ +G AL+ MYA+ GS + A F +M +
Sbjct: 300 -------------SLSEMFLRTGF-----TVILGNALIDMYAKCGSMKSALQVFWVMRDK 341
Query: 262 NMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYF 308
++ +W +I + G VLE F FV++L CSH G V KG+ YF
Sbjct: 342 DVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGREYF 401
Query: 309 TAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
M ++ CMVD+LG +GLL EA + ID M +P VIW LLGAC H
Sbjct: 402 NLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMKVEPNSVIWRTLLGACRVHGE 461
Query: 365 TKLAELVMRNLLQ 377
+LAE R LL+
Sbjct: 462 IELAEHANRQLLK 474
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/336 (20%), Positives = 127/336 (37%), Gaps = 63/336 (18%)
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
SA +L S + I ++F ++P DL +NT+I + + + +
Sbjct: 41 SALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMA 100
Query: 168 NHGF--GLSSMLYATAFSARA--SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
G G+ F RA ++ G +H+ VV D FV + LI M+ C
Sbjct: 101 RRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALIGMHASC 160
Query: 224 GCNGIESSIQIGKA----------------------------------------LVTMYA 243
G G+ S++ G+A ++T YA
Sbjct: 161 GELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARKLFDECPVKDHVSWNVMITAYA 220
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISA-------------FSQAGVLEKPRFFFFFVS 290
+ G A + F + R+++SW +IS F Q + + +S
Sbjct: 221 KRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLS 280
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK-FTYTCYFV----CMVDLLGLSGLLGEAKKLIDEMPS 345
LLS C+ SG + G+ +++++ F T + V ++D+ G + A ++ M
Sbjct: 281 LLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYAKCGSMKSALQVFWVMRD 340
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
K W +++G H + + V + +L+ V+
Sbjct: 341 KDVST-WNSIIGGLALHGHVLESIDVFKKMLKEKVR 375
>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
Length = 702
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 184/431 (42%), Gaps = 93/431 (21%)
Query: 13 ARKIHAQLISTCLIS-----SIFLQL--IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCV 65
+R++ Q+ S ++S S ++Q ID+ R+F ++ R ++ TMING VR +
Sbjct: 214 SRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVR---I 270
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF--------------- 110
G + A L + + ++ I +++C VD A F
Sbjct: 271 GKLDEARELLNEMPYRNIGAQTAM----ISGYIQCNKVDEARRFFDEIGTWDVVCWNAMI 326
Query: 111 ----------------LRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNT 145
RM+N + W I R + +F++M ERDLVSWN+
Sbjct: 327 AGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNS 386
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
+I+ +G + L +F + + G + +A S+ A++ L+ G LH VV
Sbjct: 387 LIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVK-- 444
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
G + + + AL+TMYA+ G +A L F + ++IS
Sbjct: 445 --------------------GGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVIS 484
Query: 266 WMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMA 312
W LI ++ G ++ F F+ +LS C+H+G V G F M+
Sbjct: 485 WNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMS 544
Query: 313 KF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
K ++ CMVDLLG G L EA +++ M K T +WGALLGAC +H N +L
Sbjct: 545 KVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELG 604
Query: 369 ELVMRNLLQLD 379
L L + +
Sbjct: 605 RLAAHKLSEFE 615
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 119/276 (43%), Gaps = 43/276 (15%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKS- 92
+++ R+F ++ + L ++N+M+ G + N KM L L +F+ DE S
Sbjct: 118 VNEAKRLFDEMPVKNLISWNSMLAGYTQ-----NRKMRLGL-----EFFNEMDERDVVSW 167
Query: 93 --SIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLV 141
+D ++ G +D A F P++ W I+ +F +MP R++V
Sbjct: 168 NLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIV 227
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
SWN MIS + E F E+ S+ + T + + L+ L + +
Sbjct: 228 SWNAMISAYVQRCEIDEASRLFEEMPER----DSVSWTTMINGYVRIGKLDEARELLNEM 283
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSI----QIG-------KALVTMYAEGGSTQK 250
P ++ + +I Y++C N ++ + +IG A++ YA G +
Sbjct: 284 ----PYRNIGAQTAMISGYIQC--NKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINE 337
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
A + M ++M++W +IS ++Q G +++ F
Sbjct: 338 ALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIF 373
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK--------PRFFFF 287
+++++YA+ G A F+ M RRN++SW ++S + G ++ PR F
Sbjct: 10 NSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDLF 69
Query: 288 FVSLLSGC-SHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEM 343
+L+ C + +G V K + F ++ +Y C M+ G + EAK+L DEM
Sbjct: 70 SWTLMITCYTRNGEVEKARELFDSLP-CSYRKGVACWNAMISGYVKKGRVNEAKRLFDEM 128
Query: 344 PSKPTCVIWGALLGACCSHYNTKLA-----ELVMRNLLQLDVKVFG 384
P K + W ++L + +L E+ R+++ ++ V G
Sbjct: 129 PVK-NLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDG 173
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 37/252 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F KMP R+LVSWNTM+S +G E F+ + S L T ++ V
Sbjct: 28 LFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDL-FSWTLMITCYTRNGEV-- 84
Query: 191 LEWGPHLHSRVVHMEPSLD------VFVGSGLIDMYLKCG-CNGI-----ESSIQIGKAL 238
+ + SL V + +I Y+K G N E ++ +
Sbjct: 85 --------EKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISW 136
Query: 239 VTMYAEGGSTQKADLAFEL---MSRRNMISWMVLISAFSQAGVLEKPRFFF--------- 286
+M A +K L E M R+++SW +++ F Q G L+ FF
Sbjct: 137 NSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVV 196
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+V++LSG + +G + + + F M + M+ + EA +L +EMP +
Sbjct: 197 SWVTMLSGFARNGNILESRRLFDQMPSRNIVSWN-AMISAYVQRCEIDEASRLFEEMPER 255
Query: 347 PTCVIWGALLGA 358
+ V W ++
Sbjct: 256 DS-VSWTTMING 266
>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
Length = 1112
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 116/426 (27%), Positives = 190/426 (44%), Gaps = 79/426 (18%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLID-----------DDYR-VFCDIGPRYLF 50
AC L++L + R++H+ I + L + L+D DD R VF + +
Sbjct: 278 ACAELENLSLGRQLHSWAIRSGLADDVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVM 337
Query: 51 TYNTMINGGVRCLCVG----NIKMALHLHGLVKKFYF-----------VSDESIAKSSID 95
++ +I G ++ + N+ + G V+ +F VSD + K +
Sbjct: 338 SWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLG 397
Query: 96 MHVKCGAVDYAESAFLRMLNPSLF--CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
K G A ++ + S+F C + R F+ + E++LVS+NT + R+
Sbjct: 398 HAFKRG---LASNSSVSNSVISMFVKCDRMEDAR--TAFESLSEKNLVSYNTFLDGTCRN 452
Query: 154 ---GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
FE L E+ G+S+ +A+ S A+V L G +HS+V+ + S +
Sbjct: 453 LDFEHAFELLS---EIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQ 509
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
V + LI MY KCG S A F LM RN+ISW +I
Sbjct: 510 PVCNALISMYSKCG----------------------SIDTASRVFSLMDNRNVISWTSMI 547
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK---- 313
+ F++ G E+ F +V++LS CSH G V++G +F +M +
Sbjct: 548 TGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKI 607
Query: 314 FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
++ CMVDLL +GLL +A + I+ MP + ++W LGAC H NT+L +L R
Sbjct: 608 KPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667
Query: 374 NLLQLD 379
+L+ D
Sbjct: 668 KILEFD 673
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 42/199 (21%)
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
L+K +F SD + S IDM VK E++F +F KM
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVK------GENSFENAYK---------------VFDKMS 230
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E ++V+W MI+ + GF E + F+++ GF ++ FSA A + +L G
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQ 290
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
LHS + + D V L+DMY KC + GS F+
Sbjct: 291 LHSWAIRSGLADD--VECSLVDMYAKCSAD-------------------GSVDDCRKVFD 329
Query: 257 LMSRRNMISWMVLISAFSQ 275
M +++SW LI+ + Q
Sbjct: 330 RMQDHSVMSWTALITGYMQ 348
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 128/331 (38%), Gaps = 62/331 (18%)
Query: 44 IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
I P T+++++ C+ + ++ +H + +F D + S I ++ K G +
Sbjct: 57 IRPMDSVTFSSLLKS---CIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDL 113
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
A+ F M +FG +RD+VSW+ M++ +G F+ + F
Sbjct: 114 TKAKDVFETM-------GRFG------------KRDVVSWSAMMACFGNNGREFDAIKLF 154
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
+E G + Y A ++ FVG G + +
Sbjct: 155 VEFLEMGLVPNDYCYTAVIRACSN---------------------SDFVGVGRVILGFLM 193
Query: 224 GCNGIESSIQIGKALVTMYAEG-GSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEK 281
ES + +G +L+ M+ +G S + A F+ MS N+++W ++I+ Q G E
Sbjct: 194 KTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREA 253
Query: 282 PRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVD 325
RFF F S+ S C+ ++ G+ + + C V M
Sbjct: 254 IRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSWAIRSGLADDVECSLVDMYA 313
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G + + +K+ D M + + W AL+
Sbjct: 314 KCSADGSVDDCRKVFDRMQDH-SVMSWTALI 343
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 148/321 (46%), Gaps = 44/321 (13%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERD 139
+ + I M+ G VD A F L+ L+ W I R MF +M ERD
Sbjct: 69 VTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERD 128
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSW T+I+ + G E L F E+ G + A+A +A A++ L+ G +H
Sbjct: 129 VVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHV 188
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGC-----------NGIESSIQIGKALVTMYAEGGST 248
+ E ++ + + L+DMY KCG G++ + A++ YA G +
Sbjct: 189 YIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKS 248
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYF 308
++A I F Q V + FV+LL+ CSH V +G+ YF
Sbjct: 249 KEA------------------IDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYF 290
Query: 309 TAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
+MA +Y ++ CMVDLLG SGLL EA++ + MP P IWGALLGAC H
Sbjct: 291 KSMAS-SYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHK 349
Query: 364 NTKLAELVMRNLLQLDVKVFG 384
+ + + + + + +LD G
Sbjct: 350 DIERGQRIGKIIKELDSDHIG 370
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 153/349 (43%), Gaps = 62/349 (17%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T++N V C G +K+ H LV F + I S + M+ KCG V+ A
Sbjct: 198 TLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARR----- 252
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F +MPER++V W +MI+ T+ G E + F ++ G
Sbjct: 253 -----------------VFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKA 295
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
AT S+ + L+ G +LH+ C +G+ +
Sbjct: 296 DDATIATVVSSCGQMGALDLGRYLHA----------------------YCDGHGLGKELS 333
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+ +L+ MY++ G KA F +++R++ +W V+I F+ G+ + F
Sbjct: 334 VKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGED 393
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGE 335
F+ +L+ CSH G V +G H+F M+K ++ CMVDLLG + LL E
Sbjct: 394 KVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAE 453
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
A++ I +MP P V+W +LL AC + LAE + QL+ K G
Sbjct: 454 AEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCG 502
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 45/237 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ N I+ R V ++ + H L K SD + + I+M+ C +Y SA
Sbjct: 94 YSLNIAISAAAR---VPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSC---NYPASA 147
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
RL++ D+VSWNT+I+ R G + L +F ++
Sbjct: 148 -----------------RLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKE 190
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
L + A A ++ G H+ VV ++ ++GS L+ MY KCG
Sbjct: 191 QVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGM---- 246
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
++A F M RN++ W +I+ +Q+G ++ F
Sbjct: 247 ------------------VEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLF 285
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 147/334 (44%), Gaps = 63/334 (18%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C+ N+K + K F +D ++ +DM++KCG + A
Sbjct: 1111 CLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA----------------- 1153
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
L +F ++ D V+W TMIS +G L + + G +AT
Sbjct: 1154 -----LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A + + LE G +H+ VV ++ SLD FVG+ L+DMY KC
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKC-------------------- 1248
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
GS Q A F M R ++ W ++ +Q G +++ F F+
Sbjct: 1249 --GSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIG 1306
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+LS CSHSG ++ YF AM K TY ++ C+VD LG +G + EA+ +I MP
Sbjct: 1307 VLSACSHSGLFSEAYKYFDAMFK-TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPF 1365
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
K + ++ ALLGAC + + + A+ V LL LD
Sbjct: 1366 KASASMYRALLGACRTKGDAETAKRVADKLLALD 1399
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 29/163 (17%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
++ + +H LV K F ++ S ++M+ K G V AE F+
Sbjct: 909 DLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFI--------------- 953
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSSMLYATA 181
PE DL+SWNTMIS ++ E +CTF +L G F L+S+L A +
Sbjct: 954 -------NSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
+ L G +H + D FV + LID+Y K G
Sbjct: 1007 TGDEGEYFTL--GSQVHVYAIKCGIINDSFVSTALIDLYSKGG 1047
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 63/296 (21%)
Query: 84 VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143
++D ++ + ID++ K G +D AE + + DL SW
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAE----------------------FLLHGKYDFDLASW 1067
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
N ++ + + L F + G + + ATA A + +L+ G + + +
Sbjct: 1068 NAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIK 1127
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
+ + D++V SG++DMY+KCG + +++++ F +SR +
Sbjct: 1128 LGFNNDLWVSSGVLDMYIKCG--DMPNALEL--------------------FGEISRPDE 1165
Query: 264 ISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFT 309
++W +IS + + G + +P + F +L+ S + +GK
Sbjct: 1166 VAWTTMISGYIENGDEDHALSVYHLMRVSGVQPD-EYTFATLIKASSCLTALEQGKQIHA 1224
Query: 310 AMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ K Y+ +FV +VD+ G + +A ++ +M + V W A+L H
Sbjct: 1225 NVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQH 1279
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 44/190 (23%)
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
DL+ G H+R+V L D YL L+TMY++ GS
Sbjct: 626 DLKLGKRAHARIV---------TSGDLPDRYLT-------------NNLITMYSKCGSLC 663
Query: 250 KADLAFELMSRRNMISWMVLISAFSQ------AGVLEKPRF------FFFFVSLLS---- 293
A F+ S R++++W +++A++Q VLE R F F ++ L+
Sbjct: 664 SARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPL 723
Query: 294 --GCSHSG--PVTKGKHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
C SG V++ H + F + +V++ GL+G+A+ L D+MP +
Sbjct: 724 LKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-D 782
Query: 349 CVIWGALLGA 358
V+W +L A
Sbjct: 783 AVLWNVMLKA 792
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 117 SLFCWKFGII-RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+++C K+G++ + ++F KMPERD V WN M+ + F E L F GF
Sbjct: 760 NIYC-KYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGF 814
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 150/347 (43%), Gaps = 61/347 (17%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F T+++ C +G+ K+ + G V + + + + +DM+ KCG + A
Sbjct: 219 FDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARR- 277
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F M RD+V+W+ MIS T+ E L F E+
Sbjct: 278 ---------------------LFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLA 316
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + + SA A + LE G +HS V SL +G+ L+D Y KCGC I+
Sbjct: 317 RVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGC--ID 374
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+++ AFE M +N +W LI + G + F
Sbjct: 375 DAVE--------------------AFESMPVKNSWTWTALIKGMATNGRGREALELFSSM 414
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
F+ +L CSHS V +G+ +F +MA+ ++ CMVDLLG +GL
Sbjct: 415 REAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGL 474
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ EA + I MP +P VIW ALL +C H N + E ++ ++ L+
Sbjct: 475 VDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLN 521
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 110/293 (37%), Gaps = 61/293 (20%)
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
K V+D + S I M+ CG V A ++F E
Sbjct: 148 KRGLVADRFVLSSLIHMYASCGDVAAAR----------------------LVFDAAEESG 185
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+V WN +++ ++G E + F + G + + +A + D + G +
Sbjct: 186 VVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAG 245
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
V + + + + L+DMY KCG +IGKA F+ M
Sbjct: 246 HVDEEGLARNPKLVTALMDMYAKCG--------EIGKARRL--------------FDGMQ 283
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK- 305
R++++W +IS ++QA + F VS+LS C+ G + GK
Sbjct: 284 SRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKW 343
Query: 306 -HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
H + + + T +VD G + +A + + MP K + W AL+
Sbjct: 344 VHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWT-WTALI 395
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 147/349 (42%), Gaps = 68/349 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKC----GAVDY 105
FTY ++ C +GN+ + +HG V KF F + ++ + + M+ C G +++
Sbjct: 11 FTYPFVLKA---CAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67
Query: 106 AESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165
A +F +M + D VSW+ MI R G + + F E
Sbjct: 68 ARK----------------------VFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFRE 105
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
+ G + + SA + LE G + S V +V + + LIDM+ KC
Sbjct: 106 MQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKC-- 163
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRF 284
G KA F M RN++SW +I + G +E
Sbjct: 164 --------------------GDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAV 203
Query: 285 F------------FFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLG 328
F F+ LLS CSHSG V KGK YF +M K ++ CMVD+L
Sbjct: 204 FEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLC 263
Query: 329 LSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+GL+ EA K + EMP P V+W L+ AC +H KL E + R L++
Sbjct: 264 RAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIR 312
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 159/349 (45%), Gaps = 68/349 (19%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
R + ++NTMING VG I A L + + VS S+ + VKCG V+ A
Sbjct: 94 RDVISWNTMINGYA---IVGKIDEAKRLFDEMPERNLVSXNSM----LXGFVKCGNVEDA 146
Query: 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
FG +F +MP RD+VSWN+M++ + G E L F ++
Sbjct: 147 ----------------FG------LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM 184
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
G S + SA A + L+ G HLH+ + ++ VG+ L+DMY KCG
Sbjct: 185 XAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG-- 242
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
I + Q+ F M +++++W +I+ + G +++ + F
Sbjct: 243 KISLATQV--------------------FNAMESKDVLAWNTIIAGMAILGHVKEAQQLF 282
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGL 329
FV++LS CSH+G V +G+ M+ ++ C++DLL
Sbjct: 283 KEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLAR 342
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+GLL EA +LI MP +P GALLG C H N +L E+V + L+ L
Sbjct: 343 AGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINL 391
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 104/274 (37%), Gaps = 61/274 (22%)
Query: 131 MFQKMPERDLVSWNTMISILTRHG------FGFETL-CTFIELWNHGFGLSSMLYATAFS 183
+F +RDLVSWN MI + G F+ + C + WN T +
Sbjct: 56 LFNLCSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWN-----------TMIN 104
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A V ++ L + P ++ + ++ ++KCG +E + +
Sbjct: 105 GYAIVGKIDEAKRLFDEM----PERNLVSXNSMLXGFVKCG--NVEDAFGL--------- 149
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
F M R+++SW +++ ++Q G + F VS
Sbjct: 150 -----------FSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVS 198
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKP 347
LLS C+H G + KG H T + + +VD+ G + A ++ + M SK
Sbjct: 199 LLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKD 258
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ W ++ + K A+ + + + + V+
Sbjct: 259 V-LAWNTIIAGMAILGHVKEAQQLFKEMKEAGVE 291
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+G E I +L+ +YA G A F L S R+++SW +I + + G + R
Sbjct: 28 SGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSDRDLVSWNAMIDGYVKRGEMGHARMV 87
Query: 286 F---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEA 336
F + ++++G + G + + K F M + + + G + +A
Sbjct: 88 FDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSXNSMLXGFVK-CGNVEDA 146
Query: 337 KKLIDEMPSKPTCVIWGALLG--ACCSHYNTKLA 368
L EMP + V W ++L A C N LA
Sbjct: 147 FGLFSEMPCRDV-VSWNSMLACYAQCGKPNEALA 179
>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
Length = 570
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 148/321 (46%), Gaps = 61/321 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG V + F ++ +A + I M+ KCG++ AE+ +F+
Sbjct: 246 VHGFVIRSGFDANIPLANALIAMYGKCGSIPMAEA----------------------LFE 283
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
M R LVSWNTM++I +HG E + F + G + + SA LE
Sbjct: 284 GMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGFDCVTLVSVLSACGRSGALET 343
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H F S +G+++ +IG LV MYA+ G A
Sbjct: 344 GKWVHE-----------FARS-----------HGLDADARIGNVLVDMYAKCGEIADARK 381
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGP 300
F+ + R ++SW +ISA++ G E+ + F F F ++L C HSG
Sbjct: 382 VFDCLHVRGVVSWSAMISAYANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVACGHSGL 441
Query: 301 VTKG-KHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V +G KH+ + ++ + + ++ C+VD+LG +G L EA ++I M P +WGA L
Sbjct: 442 VNEGLKHFNSILSDYQMSPTLEHYACIVDMLGRAGRLVEAYEIIRGMSLCPDKCVWGAFL 501
Query: 357 GACCSHYNTKLAELVMRNLLQ 377
G C H N +LAE V ++L Q
Sbjct: 502 GGCKLHSNLELAEFVAKDLFQ 522
>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
Length = 981
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 53/319 (16%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH + + F+SDE +A S I M+ KCG ++ + + +F
Sbjct: 471 LHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTN----------------------IFN 508
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+ +++VSWN +I+ + G G E L FI++ + G L + A S+ AS+ LE
Sbjct: 509 SITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEE 568
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAE 244
G LH + D +V + +DMY KCG + Q L++ YA+
Sbjct: 569 GMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQCWNTLISGYAK 628
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKG 304
G ++A+ F+ M + KP + FV+LLS CSH+G V KG
Sbjct: 629 YGYFKEAEETFKQM-----------------VAMGRKPD-YVTFVALLSACSHAGLVDKG 670
Query: 305 KHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
Y+ +MA F + + VC+VDLLG G EA++ I+EMP P +IW +LL +
Sbjct: 671 IDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLIWRSLLSSSR 730
Query: 361 SHYNTKLAELVMRNLLQLD 379
+H N ++ + LL+LD
Sbjct: 731 THKNLEIGRKAAKKLLELD 749
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 41/245 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M E D +S N MIS+ + G + F ++ +HG + + S AS
Sbjct: 202 LFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADH 261
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +HS C + ++SS+ + ALV MY+ G
Sbjct: 262 FSHGSGIHSL----------------------CLRSSLDSSVTVINALVNMYSAAGKLSD 299
Query: 251 ADLAFELMSRRNMISWMVLISAFSQA----------GVL----EKPRFFFFFVSLLSGCS 296
A+ F MSRR++ISW +IS++ Q G L E P F S L CS
Sbjct: 300 AEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPN-HLTFSSALGACS 358
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + GK + + + + ++ + G + +A+K+ MP+ V +
Sbjct: 359 SPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDV-VSYN 417
Query: 354 ALLGA 358
L+G
Sbjct: 418 VLIGG 422
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 108/254 (42%), Gaps = 39/254 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER++VSW ++ L+ +G+ ETL + ++ G ++ +AT S S+ +
Sbjct: 101 LFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLEN 160
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G + S V+ +G+++ + + +L+TM+ G Q
Sbjct: 161 EVPGLQVASHVI----------------------VSGLQNQVSVANSLITMFGNLGRVQD 198
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A+ F+ M + IS +IS +S G+ K F SL+S C+
Sbjct: 199 AEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCAS 258
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ + G H + + + +V++ +G L +A+ L M S+ + W
Sbjct: 259 ADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM-SRRDLISWNT 317
Query: 355 LLGACCSHYNTKLA 368
++ + + N+ A
Sbjct: 318 MISSYVQNCNSTDA 331
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 88/442 (19%), Positives = 158/442 (35%), Gaps = 107/442 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL------------QLIDDDYRVFCDIGPRY 48
M C S IH+ + + L SS+ + +L D ++ +F ++ R
Sbjct: 253 MSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEF-LFWNMSRRD 311
Query: 49 LFTYNTMINGGVR--------------------------------CLCVGNIKMALHLHG 76
L ++NTMI+ V+ C G + +H
Sbjct: 312 LISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHA 371
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
+V + + + S I M+ KC +++ AE +FQ MP
Sbjct: 372 IVLQLSLQRNLLVGNSLITMYGKCNSMEDAEK----------------------VFQSMP 409
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL-EWGP 195
D+VS+N +I G + + F + + G + + + S DL +G
Sbjct: 410 THDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGR 469
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
LH+ ++ D +V + LI MY KCG +ESS I F
Sbjct: 470 PLHAYIIRTGFLSDEYVANSLITMYAKCG--NLESSTNI--------------------F 507
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVT 302
++ +N++SW +I+A +Q G E+ F LS C+ +
Sbjct: 508 NSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLE 567
Query: 303 KGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
+G H + Y V +D+ G G + E +++ + +P W L+
Sbjct: 568 EGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQ-QCWNTLISGY 626
Query: 360 CSHYNTKLAELVMRNLLQLDVK 381
+ K AE + ++ + K
Sbjct: 627 AKYGYFKEAEETFKQMVAMGRK 648
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 84/235 (35%), Gaps = 45/235 (19%)
Query: 135 MPERDLVSWNTMISILTRHG---FGFETLCTFIE--LWNHGFGLSSMLYATAFSARASVY 189
MP+R +W T +S R G FE L E + GF L+S++ TA R
Sbjct: 1 MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLV--TACERRGRDE 58
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ G +H+ + H G+ ++ IG AL+ +Y G
Sbjct: 59 GIACGAAIHA-LTHRA---------------------GLMGNVYIGTALLHLYGSRGIVS 96
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEK----------------PRFFFFFVSLLS 293
A F M RN++SW L+ A S G LE+ F VSL
Sbjct: 97 DARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCG 156
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
+ P + + ++ + G G + +A+KL D M T
Sbjct: 157 SLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDT 211
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 170/393 (43%), Gaps = 71/393 (18%)
Query: 9 SLPIARKIHAQLISTCLISSIFLQLIDDDYRVF-CDIGPRYLFTYNTMINGGVRCLCVGN 67
SL +A A L CL ++ Q+ D+ F CDI ++++ C +G
Sbjct: 392 SLMVAGYCKAGLDVKCL--ELYRQMQCRDHDEFLCDI--------TSLVSAISSCSRLGR 441
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+++ +H K + + SI S I M+ +CG N L C F + +
Sbjct: 442 LRLGQSVHCYSIKC-LLDENSITNSLIGMYGRCG-------------NFELACKIFAVAK 487
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
L RD+V+WN +IS + G + L + ++ +S T SA A+
Sbjct: 488 L--------RRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACAN 539
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ LE G LHS V +M G+ES + I ALV MY + G
Sbjct: 540 LAALEHGELLHSYVKNM----------------------GLESDVSISTALVDMYTKCGQ 577
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294
A F+ M +R++++W V+IS + G + F F+++LS
Sbjct: 578 LGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSA 637
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C H+G V +G+ F M + ++ CMVDLLG SGLL EA+ L+ MP KP +
Sbjct: 638 CCHAGLVDEGRKLFIRMGGYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGV 697
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
WG LL AC H N ++ V + D + G
Sbjct: 698 WGTLLSACKVHDNFEMGLRVAKKAFSSDPRNDG 730
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/370 (20%), Positives = 132/370 (35%), Gaps = 82/370 (22%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
R+ D G R TM +G C +G + LHG K + + M+
Sbjct: 210 RLAGDSGARP--NSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYS 267
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFE 158
KC D E A I+F ++ E+D+VSW +I R G E
Sbjct: 268 KC---DMTEDA-------------------CILFPELTEKDVVSWTGLIGAYCRRGLARE 305
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
+ F E+ G +L + S S ++ G H+ ++
Sbjct: 306 AVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIR--------------- 350
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
S+ I +L++MY + A F ++ +R+ SW ++++ + +AG+
Sbjct: 351 -------RNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGL 403
Query: 279 LEKPRFFF----------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV- 321
K + VS +S CS G + G+ + CY +
Sbjct: 404 DVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQ---------SVHCYSIK 454
Query: 322 CMVD-------LLGLSGLLGE---AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
C++D L+G+ G G A K+ + V W AL+ + + A +
Sbjct: 455 CLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSL 514
Query: 372 MRNLLQLDVK 381
+L DVK
Sbjct: 515 YGQMLTEDVK 524
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 39/203 (19%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL----WNHGFGLSSMLYATAFSARA 186
+F +M ERD+V+W ++S R+G + +C +++ + G +S + A
Sbjct: 173 LFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACG 232
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ +L G LH V GI + AL +MY++
Sbjct: 233 VLGELSAGRCLHGYAVK----------------------EGIRDCALVVSALFSMYSKCD 270
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVS-LLS 293
T+ A + F ++ ++++SW LI A+ + G+ + F VS +LS
Sbjct: 271 MTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLS 330
Query: 294 GCSHSGPVTKGKHYFTAMAKFTY 316
G S V +GK + + + +
Sbjct: 331 GLGSSANVNRGKAFHAVIIRRNF 353
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 37/151 (24%)
Query: 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271
VG+ + +K G + S+ + +LV MYA GS A F+ M R++++W ++
Sbjct: 131 VGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVV- 189
Query: 272 AFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSG 331
SGC +G KG CY V M+ L G SG
Sbjct: 190 ---------------------SGCVRNGECGKG------------ICYLVQMIRLAGDSG 216
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
++ + + + C + G L C H
Sbjct: 217 ARPNSRTMESGLEA---CGVLGELSAGRCLH 244
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 147/334 (44%), Gaps = 63/334 (18%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C+ N+K + K F +D ++ +DM++KCG + A
Sbjct: 1111 CLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA----------------- 1153
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
L +F ++ D V+W TMIS +G L + + G +AT
Sbjct: 1154 -----LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A + + LE G +H+ VV ++ SLD FVG+ L+DMY KC
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKC-------------------- 1248
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
GS Q A F M R ++ W ++ +Q G +++ F F+
Sbjct: 1249 --GSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIG 1306
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+LS CSHSG ++ YF AM K TY ++ C+VD LG +G + EA+ +I MP
Sbjct: 1307 VLSACSHSGLFSEAYKYFDAMFK-TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPF 1365
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
K + ++ ALLGAC + + + A+ V LL LD
Sbjct: 1366 KASASMYRALLGACRTKGDAETAKRVADKLLALD 1399
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 29/163 (17%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
++ + +H LV K F ++ S ++M+ K G V AE F+
Sbjct: 909 DLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFI--------------- 953
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSSMLYATA 181
PE DL+SWNTMIS ++ E +CTF +L G F L+S+L A +
Sbjct: 954 -------NSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
+ L G +H + D FV + LID+Y K G
Sbjct: 1007 TGDEGEYFTL--GSQVHVYAIKCGIINDSFVSTALIDLYSKGG 1047
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 63/296 (21%)
Query: 84 VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143
++D ++ + ID++ K G +D AE + + DL SW
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAE----------------------FLLHGKYDFDLASW 1067
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
N ++ + + L F + G + + ATA A + +L+ G + + +
Sbjct: 1068 NAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIK 1127
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
+ + D++V SG++DMY+KCG + +++++ F +SR +
Sbjct: 1128 LGFNNDLWVSSGVLDMYIKCG--DMPNALEL--------------------FGEISRPDE 1165
Query: 264 ISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVTKGKHYFT 309
++W +IS + + G + +P + F +L+ S + +GK
Sbjct: 1166 VAWTTMISGYIENGDEDHALSVYHLMRVSGVQPD-EYTFATLIKASSCLTALEQGKQIHA 1224
Query: 310 AMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ K Y+ +FV +VD+ G + +A ++ +M + V W A+L H
Sbjct: 1225 NVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQH 1279
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 44/190 (23%)
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
DL+ G H+R+V L D YL L+TMY++ GS
Sbjct: 626 DLKLGKRAHARIV---------TSGDLPDRYLT-------------NNLITMYSKCGSLC 663
Query: 250 KADLAFELMSRRNMISWMVLISAFSQ------AGVLEKPRF------FFFFVSLLS---- 293
A F+ S R++++W +++A++Q VLE R F F ++ L+
Sbjct: 664 SARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPL 723
Query: 294 --GCSHSG--PVTKGKHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
C SG V++ H + F + +V++ GL+G+A+ L D+MP +
Sbjct: 724 LKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-D 782
Query: 349 CVIWGALLGA 358
V+W +L A
Sbjct: 783 AVLWNVMLKA 792
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 117 SLFCWKFGII-RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+++C K+G++ + ++F KMPERD V WN M+ + F E L F GF
Sbjct: 760 NIYC-KYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGF 814
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 153/349 (43%), Gaps = 62/349 (17%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T++N V C G +K+ H LV F + I S + M+ KCG V+ A
Sbjct: 110 TLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARR----- 164
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F +MPER++V W +MI+ T+ G E + F ++ G
Sbjct: 165 -----------------VFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKA 207
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
AT S+ + L+ G +LH+ C +G+ +
Sbjct: 208 DDATIATVVSSCGQMGALDLGRYLHAY----------------------CDGHGLGKELS 245
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+ +L+ MY++ G KA F +++R++ +W V+I F+ G+ + F
Sbjct: 246 VKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGED 305
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGE 335
F+ +L+ CSH G V +G H+F M+K ++ CMVDLLG + LL E
Sbjct: 306 KVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAE 365
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
A++ I +MP P V+W +LL AC + LAE + QL+ K G
Sbjct: 366 AEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCG 414
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 58/270 (21%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ N I+ R V ++ + H L K SD + + I+M+ C +Y SA
Sbjct: 6 YSLNIAISAAAR---VPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSC---NYPASA 59
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
RL++ D+VSWNT+I+ R G + L +F ++
Sbjct: 60 -----------------RLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKE 102
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
L + A A ++ G H+ VV ++ ++GS L+ MY KCG
Sbjct: 103 QVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGM---- 158
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
++A F M RN++ W +I+ +Q+G ++ F
Sbjct: 159 ------------------VEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDM 200
Query: 287 ----------FFVSLLSGCSHSGPVTKGKH 306
+++S C G + G++
Sbjct: 201 QIAGVKADDATIATVVSSCGQMGALDLGRY 230
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 39/265 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M ERD+VSW T+++ ++ G E L TF + GF + +++ + AS+
Sbjct: 429 VFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCF 488
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE+G +H + + + S LIDMY KC GS +
Sbjct: 489 LEYGRQVHGLLCKAGLDTEKCIESALIDMYAKC----------------------GSITE 526
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSL-------------LSGCSH 297
A F+ +S +++SW +IS ++Q G++E F + L L CSH
Sbjct: 527 AGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSH 586
Query: 298 SGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G V +G YF M ++ C++DLLG G L +A + I +MP +P ++W
Sbjct: 587 GGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQ 646
Query: 354 ALLGACCSHYNTKLAELVMRNLLQL 378
LLG C H N +L E+ R +L +
Sbjct: 647 TLLGGCRVHGNVELGEIAARKILSI 671
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 91/422 (21%), Positives = 161/422 (38%), Gaps = 103/422 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+++C L SL + + +HAQ++ + IF+ I+D Y VF +
Sbjct: 174 IQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQ 233
Query: 50 FTYNTMINGGV----------------RCLCVGN----------------IKMALHLHGL 77
++N MI+G C N + M +
Sbjct: 234 VSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNC 293
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF-LRMLNPSLFCWKFGIIRLLIMFQKMP 136
+ + + + IDM+ KCG++ A S F +N + P
Sbjct: 294 ASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGV---------------NTP 338
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
WN MIS ++ G E L ++++ +G Y + F+A A+ L++G
Sbjct: 339 ------WNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFG-- 390
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
RVVH M LKCG + + + + A+ Y++ G + F+
Sbjct: 391 ---RVVH--------------GMVLKCGLDLM--VVSVNNAIADAYSKCGFLEDVRKVFD 431
Query: 257 LMSRRNMISWMVLISAFSQAGVLE---------KPRFF----FFFVSLLSGCSHSGPVTK 303
M R+++SW L++A+SQ+ + E + F F F S+L C+ +
Sbjct: 432 RMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEY 491
Query: 304 GKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
G+ + K T C ++D+ G + EA K+ D++ S P V W A++
Sbjct: 492 GRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKI-SNPDIVSWTAIISGYA 550
Query: 361 SH 362
H
Sbjct: 551 QH 552
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 50/236 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV--KCGAVDYAESAFLRMLNPSLF 119
C G+I+ A +HGLV K F + + + HV KC S F
Sbjct: 74 CAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKC----------------SEF 117
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
G+ F +MP+R++ SW MI T HG F+ F E+ N G Y+
Sbjct: 118 RAACGV------FDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYS 171
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ + LE G +H+++V + +FV + L++MY K G IE S +
Sbjct: 172 AIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLG--SIEDSYWV----- 224
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFFFFFVSLLSG 294
F +M+ N +SW +IS + G+ LE F FV + +G
Sbjct: 225 ---------------FNMMTEHNQVSWNAMISGCTSNGLHLEA---FDLFVRMKNG 262
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 43/264 (16%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYL----FTYNTMING 58
ACG +P R + + + ++ S L D ++ FC++ + F Y+ +I
Sbjct: 120 ACGVFDEMP-QRNVFSWTV--MIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQS 176
Query: 59 GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL 118
C+ + ++++ +H + F + ++ S ++M+ K G++ E ++
Sbjct: 177 ---CIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSI---EDSY-------- 222
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
W +F M E + VSWN MIS T +G E F+ + N +
Sbjct: 223 --W---------VFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTL 271
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----------CNGI 228
+ A + D+ G + + + +V VG+ LIDMY KCG N I
Sbjct: 272 VSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFI 331
Query: 229 ESSIQIG-KALVTMYAEGGSTQKA 251
+ A+++ Y++ G +Q+A
Sbjct: 332 NCGVNTPWNAMISGYSQSGCSQEA 355
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 148/337 (43%), Gaps = 63/337 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G ++ H + K F D + +D + K G V+ A +
Sbjct: 40 CAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARN------------- 86
Query: 122 KFGIIRLLIMFQKMPERDL--VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
+F M ER+ V+WNTMIS + G + F ++ + + +
Sbjct: 87 ---------LFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMV 137
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ SA A + L+ G +H + +DV +G+ LIDMY KCG +E++I +
Sbjct: 138 SLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCG--ALEAAIDV----- 190
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
F +SR+N+ W +I G E+ F
Sbjct: 191 ---------------FHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGV 235
Query: 288 -FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDE 342
FV +LSGCSHSG ++ G+ YF+ M ++ CMVDLLG +G L EA +LI
Sbjct: 236 TFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRA 295
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP KP ++ G+LL AC H +TKL E V + LL+LD
Sbjct: 296 MPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELD 332
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 22/121 (18%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T TM++ C +G + M +HG ++ D + + IDM+ KCGA++ A F
Sbjct: 132 TEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVF 191
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+ ++FC WN++I L +G G E + FI + G
Sbjct: 192 HGLSRKNIFC----------------------WNSIIVGLGMNGRGEEAIAAFIVMEKEG 229
Query: 171 F 171
Sbjct: 230 I 230
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 140/312 (44%), Gaps = 69/312 (22%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+A +++D++VKCG +D A +F KM +D+V+W M+
Sbjct: 214 VATAAVDLYVKCGEMDKARG----------------------VFDKMKNKDVVAWGAMVG 251
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM---- 204
+G E L F + G A A SA + L+ G RVV M
Sbjct: 252 GYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLG----RRVVGMLQWD 307
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
E + +G+ LIDMY KC GST +A + F+ M R++I
Sbjct: 308 EVLGNPVLGTALIDMYAKC----------------------GSTGEAWMVFQKMRNRDII 345
Query: 265 SWMVLI----------SAFSQAGVLEKPRFFF---FFVSLLSGCSHSGPVTKGKHYFTAM 311
W +I AF+ G ++K F+ LL C+H+G V G+ YF M
Sbjct: 346 VWNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNM 405
Query: 312 AKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
+ + ++ MVDLL +GLL EA +LI +MP + V+WGALLG C H N L
Sbjct: 406 TQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNADL 465
Query: 368 AELVMRNLLQLD 379
AE V++ L+QL+
Sbjct: 466 AEHVLKQLIQLE 477
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/300 (18%), Positives = 106/300 (35%), Gaps = 60/300 (20%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
LH K S+ + S ++++ +CG + A+ AF M P
Sbjct: 96 QLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKAFDEMRQPP--------------- 140
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
VSW +I+ G G E + + G S +A A V DL
Sbjct: 141 ------STVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLV 194
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G + + + +VFV + +D+Y+KCG KA
Sbjct: 195 TGEEVWTAAEKEGIAGNVFVATAAVDLYVKCG----------------------EMDKAR 232
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSL-------------LSGCSHSG 299
F+ M +++++W ++ ++ G + FF + + LS C+ G
Sbjct: 233 GVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLG 292
Query: 300 PVTKGKHYFTAM---AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ G+ + ++D+ G GEA + +M ++ ++W A++
Sbjct: 293 ALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNR-DIIVWNAMI 351
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 40/195 (20%)
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G LH+R + + + V + L+++Y +C G
Sbjct: 91 LTAGAQLHARSLKLPSHSNPHVLTSLLNLYARC----------------------GRLHD 128
Query: 251 ADLAFELMSR-RNMISWMVLISAFSQAGV------LEKPRFF-------FFFVSLLSGCS 296
A AF+ M + + +SW LI+A+ AG + + F F V +L+ C+
Sbjct: 129 AQKAFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACA 188
Query: 297 HSGPVTKGKHYFTAMAKFTYT-CYFVCM--VDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ G+ +TA K FV VDL G + +A+ + D+M +K V WG
Sbjct: 189 RVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNK-DVVAWG 247
Query: 354 ALLGACCSHYNTKLA 368
A++G S+ + + A
Sbjct: 248 AMVGGYASNGHPREA 262
>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1067
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 146/330 (44%), Gaps = 62/330 (18%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
++ +H LV K +D +I + + + KCG + Y E+ F RM +
Sbjct: 609 ELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSD------------- 655
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+D VSWN+MIS + + + + G L +AT SA A+V
Sbjct: 656 --------RQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATV 707
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
LE G +H V C +ES I IG ALV MYA+ G
Sbjct: 708 ATLERGMEVHGCSVR--------------------AC--LESDIVIGSALVDMYAKCGRI 745
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
A FE+M RN+ SW +IS +++ G K F FV +LS C
Sbjct: 746 DYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSAC 805
Query: 296 SHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SH+G V +G +F +M++ +F CMVDLLG G L + + +++MP KP +I
Sbjct: 806 SHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLI 865
Query: 352 WGALLGACC--SHYNTKLAELVMRNLLQLD 379
W +LGACC + NT L LL+++
Sbjct: 866 WRTVLGACCRANGRNTALGRRAAEMLLEME 895
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 117/297 (39%), Gaps = 57/297 (19%)
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V+K F+ D + + + K G++ YA++ +FQKM
Sbjct: 310 VEKSGFLHDLYVGSALVSGFAKAGSIGYAKN----------------------IFQKMSY 347
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R++VS N +I L R G E + F+E+ + L+ Y +A + LE G
Sbjct: 348 RNVVSLNGLIIGLVRQKRGEEAVELFMEMKD-SVELNPNSYMIILTAFPEFHVLENGKRK 406
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
S V H + SGL++ + I IG L+ MYA+ G+ A + F L
Sbjct: 407 GSEV-HA-----FLIRSGLLN-----------AQIAIGNGLINMYAKCGAINDACVVFRL 449
Query: 258 MSRRNMISWMVLISAFSQ-AGVLEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
M ++ ++W +I+ Q LE + F F +S LS C+ G ++ G
Sbjct: 450 MDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVG 509
Query: 305 KHYFTAMAKFTYTCYFVCMVDLLGLSGLLG---EAKKLIDEMPSKPTCVIWGALLGA 358
+ K LL L G G E +K M V W +L+GA
Sbjct: 510 EQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDH-VSWNSLIGA 565
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/358 (20%), Positives = 139/358 (38%), Gaps = 63/358 (17%)
Query: 39 RVFCDIGPRYLFTYN-TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
+ F ++ L+ N TMI+ C +G I + LH K D S++ + + ++
Sbjct: 476 KTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALY 535
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG- 156
+CG V + AF ML + D VSWN++I L
Sbjct: 536 GECGYVKECQKAFSLML----------------------DYDHVSWNSLIGALADSEPSM 573
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E + +F+ + G+ + + + T +A +S+ E G +H+ V+ + D + + L
Sbjct: 574 LEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENAL 633
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+ Y KCG G Y E ++ +D R++ +SW +IS +
Sbjct: 634 LACYGKCGDMG--------------YCENIFSRMSD-------RQDEVSWNSMISGYIHN 672
Query: 277 GVLEKPRFF-------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV-- 321
+L K F F ++LS C+ + +G + V
Sbjct: 673 ELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIG 732
Query: 322 -CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH-YNTKLAELVMRNLLQ 377
+VD+ G + A + + MP++ W +++ H + TK +L + LQ
Sbjct: 733 SALVDMYAKCGRIDYASRFFEMMPAR-NLYSWNSMISGYARHGHGTKSLDLFAQMKLQ 789
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 111/294 (37%), Gaps = 77/294 (26%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+I I+M+ KCGA++ A ++F+ M +D V+WN+MI
Sbjct: 425 AIGNGLINMYAKCGAINDA----------------------CVVFRLMDNKDSVTWNSMI 462
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ L ++ E + TF E+ S+ +A S+ AS+ + G LH + +
Sbjct: 463 TGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLD 522
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
LDV + AL+ +Y E G ++ AF LM + +SW
Sbjct: 523 LDV----------------------SVSNALLALYGECGYVKECQKAFSLMLDYDHVSWN 560
Query: 268 VLISAF--SQAGVLEKPRFFFF------------FVSLLSGCS-----------HSGPVT 302
LI A S+ +LE F F+++L+ S H+ +
Sbjct: 561 SLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLK 620
Query: 303 KGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ TA+ CY C G +G + + M + V W +++
Sbjct: 621 RNVAADTAIENALLACYGKC--------GDMGYCENIFSRMSDRQDEVSWNSMI 666
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 50/227 (22%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKC-GAVDYAES 108
+ + ++I C G +K + +HGL+ K +V+D + + I M+ G VDYA
Sbjct: 175 YAFGSVIRACQECGEYG-LKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARR 233
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF----I 164
AF + W R+LVS N+MIS+ + G F
Sbjct: 234 AFDSI-------WP---------------RNLVSLNSMISVYCQRGDAVSAFDIFSTMQK 271
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI-DMYLKC 223
E+ G + + + SA S+ + S +V +E L SG + D+Y
Sbjct: 272 EVMGDGLKPNEYTFGSLISATCSLAN--------SGLVLLEQLLTRVEKSGFLHDLY--- 320
Query: 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
+G ALV+ +A+ GS A F+ MS RN++S LI
Sbjct: 321 ----------VGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLI 357
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASV 188
+F +MP R+LVSW+ +IS TR+ E F ++ + GF + + + A
Sbjct: 130 VFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGE 189
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
Y L++G +H + + DV + LI MY G AL G
Sbjct: 190 YGLKFGMQIHGLMSKTQYVNDVTASNVLISMY--------------GNAL-------GMV 228
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG 277
A AF+ + RN++S +IS + Q G
Sbjct: 229 DYARRAFDSIWPRNLVSLNSMISVYCQRG 257
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 148/321 (46%), Gaps = 44/321 (13%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERD 139
+ + I M+ G VD A F L+ L+ W I R MF +M ERD
Sbjct: 154 VTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERD 213
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSW T+I+ + G E L F E+ G + A+A +A A++ L+ G +H
Sbjct: 214 VVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHV 273
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGC-----------NGIESSIQIGKALVTMYAEGGST 248
+ E ++ + + L+DMY KCG G++ + A++ YA G +
Sbjct: 274 YIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKS 333
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYF 308
++A I F Q V + FV+LL+ CSH V +G+ YF
Sbjct: 334 KEA------------------IDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYF 375
Query: 309 TAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
+MA +Y ++ CMVDLLG SGLL EA++ + MP P IWGALLGAC H
Sbjct: 376 KSMAS-SYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHK 434
Query: 364 NTKLAELVMRNLLQLDVKVFG 384
+ + + + + + +LD G
Sbjct: 435 DIERGQRIGKIIKELDSDHIG 455
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 62/339 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++ + LH L K +S +A + I+M+ KC +D A
Sbjct: 408 CATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKA--------------- 452
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F +P ++++SW ++I+ L + FE L F+ +++ A
Sbjct: 453 -------LDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAA 504
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A A + L G +H+ V+ LD F+ + L+DMY++CG + T
Sbjct: 505 LAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCG------------RMNTA 552
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE------KPRFF---FFF 288
+++ S +K ++ SW +L++ +S+ G V+E K R F
Sbjct: 553 WSQFNSQKK-----------DVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITF 601
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+SLL GCS S V +G YF+ M + T ++ C+VDLLG +G L EA K I +MP
Sbjct: 602 ISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPV 661
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
P +WGALL AC H+ L EL +++ +LD K G
Sbjct: 662 TPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVG 700
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 43/254 (16%)
Query: 122 KFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLYA 179
+FG ++ +F KM ER+L SWN ++ + G+ E +C + LW G +
Sbjct: 141 RFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFP 200
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ DL G +H VV G E I + AL+
Sbjct: 201 CVLRTCGGIPDLARGKEVHVHVVRY----------------------GYELDIDVVNALI 238
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
TMY + G + A L F+ M RR++ISW +IS + + G+ + FF
Sbjct: 239 TMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLM 298
Query: 288 -FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC--MVDLLGLSGLLGEAKKLIDE 342
S++S C G G+ H + F VC + + +G EA+KL
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAYVITTGFAVDIS-VCNSLTQMYLNAGSWREAEKLFSR 357
Query: 343 MPSKPTCVIWGALL 356
M K V W ++
Sbjct: 358 MERKDI-VSWTTMI 370
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 77/272 (28%)
Query: 36 DDYRVFCDIGPRYLFTYNTMINGGV-------------RCLCVGNIKMALH--------- 73
D + VF + R LF++N ++ G R L VG +K ++
Sbjct: 147 DAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTC 206
Query: 74 -----------LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
+H V ++ + D + + I M+VKCG V A
Sbjct: 207 GGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR--------------- 251
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
++F +MP RD++SWN MIS +G E L F + M +
Sbjct: 252 -------LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVI 304
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA + D G +H+ V+ ++D+ V CN +L MY
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISV------------CN----------SLTQMY 342
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
GS ++A+ F M R++++SW +IS +
Sbjct: 343 LNAGSWREAEKLFSRMERKDIVSWTTMISGYE 374
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 44/212 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ ++ +H V F D S+ S M++ G+ AE
Sbjct: 307 CELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEK------------- 353
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +M +D+VSW TMIS + + + T+ + + A
Sbjct: 354 ---------LFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAV 404
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ DL+ G LH + V V + LI+MY KC C I KAL
Sbjct: 405 LSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKC--------IDKAL--- 453
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
D+ F + R+N+ISW +I+
Sbjct: 454 ----------DI-FHNIPRKNVISWTSIIAGL 474
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE----------- 280
+++G A + M+ G+ A F MS RN+ SW VL+ +++ G +
Sbjct: 129 VELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLW 188
Query: 281 ----KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLL 333
KP + F +L C + +GK + ++ Y + L+ + G +
Sbjct: 189 VGGVKPD-VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDV 247
Query: 334 GEAKKLIDEMPSKPTCVIWGALL 356
A+ L D MP + + W A++
Sbjct: 248 KSARLLFDRMPRRDI-ISWNAMI 269
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 153/352 (43%), Gaps = 49/352 (13%)
Query: 55 MINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRML 114
M++ C G I+ HGLV + S ++ I M+ C V A F
Sbjct: 272 MVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGE 331
Query: 115 NPSLFCWKFGIIRLL---------IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165
+ F W I L +F MP++D VSW+ MI+ + E L F
Sbjct: 332 SLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDS 391
Query: 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
+ H + + SA +++ LE G +H + + ++ + +G+ LIDMY+KCGC
Sbjct: 392 MRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGC 451
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+E+++++ F+++ + W +I + G++ +
Sbjct: 452 --MEAALEV--------------------FDMLEEKGTPCWNAVIVGLAMNGLVTRSLDM 489
Query: 286 F--------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLL 327
F F +LS C H G V +G+ +F M ++ CMVDLL
Sbjct: 490 FSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLL 549
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
G +G + EA+ +I MP P WGALLGAC H ++++ E V + L++LD
Sbjct: 550 GRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGERVGKKLVKLD 601
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 112/294 (38%), Gaps = 35/294 (11%)
Query: 97 HVKCGAVDYAESAFLRMLN---------PSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+V+ G V+ A F RM +LF + + +F RD +W M+
Sbjct: 182 YVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWTAMV 241
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
S R+ E L F ++ G+ + + + +A A ++ G H VV
Sbjct: 242 SCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLG 301
Query: 208 LDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
V V + LI MY C NG ++++ Y + G + A F++M
Sbjct: 302 SRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVM 361
Query: 259 SRRNMISWMVLISA-------------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK 305
++ +SW +I+ F E VS++S CS+ + +GK
Sbjct: 362 PDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGK 421
Query: 306 HYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ K+ Y V ++D+ G + A ++ D + K T W A++
Sbjct: 422 LVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGT-PCWNAVI 474
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
NT++ R GF + + + L A A +AR D+ G +HS V
Sbjct: 78 NTLLKAALRQGFPHLCFPLYASMPAAPDTYTHPLLAAACAARG---DVREGLQVHSHSVK 134
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA-----------LVTMYAEGGSTQKAD 252
S ++++ + L+ MY CGC + S+ ++ A ++ Y G ++A
Sbjct: 135 HGFSDNLYLRNALMHMYSACGC--VASARRVFDAGPVWDAVSWNTILATYVRDGDVEQAV 192
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
F M R+ + +++ F++ G++E+ R F
Sbjct: 193 KVFTRMPERSAAAVSAMVALFARRGMVEEARGVF 226
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 173/395 (43%), Gaps = 78/395 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+I +H + KF F D + S I M+ CG + A + F L W
Sbjct: 20 CWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTW 79
Query: 122 -----------KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+ G R L F++MPERDL SWN+MI+ +G + +L+N
Sbjct: 80 NSMIDGYVKNGEIGAAREL--FEEMPERDLFSWNSMIAGYVGNG----DMTAAEDLFNKM 133
Query: 171 FGLSSMLYATAFSARASVYDLE-------WGPH-----------LHSRVVHMEPSLDVFV 212
+ + A V ++E W P+ L+ R+ + L +F
Sbjct: 134 PFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFD 193
Query: 213 G---------SGLIDMYLKCGCNG-----------------IESSIQIGKALVTMYAEGG 246
+ L+ + C G IE + + AL+TMYA+ G
Sbjct: 194 KMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCG 253
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLS 293
+ A F+ MS R+++SW +I + G +K F F+ +LS
Sbjct: 254 AMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLS 313
Query: 294 GCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
C+HSG + +G YF M + ++ CMVDLLG +GL+ + ++LI +MP +
Sbjct: 314 ACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGT 373
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+WGALL AC +H N++LAE+V + L++L+ + G
Sbjct: 374 ALWGALLSACRTHSNSELAEIVAKRLIELEPRDIG 408
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 39/265 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M ERD+VSW T+++ ++ G E L TF + GF + +++ + AS+
Sbjct: 483 VFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCF 542
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE+G +H + + + S LIDMY KC GS +
Sbjct: 543 LEYGRQVHGLLCKAGLDTEKCIESALIDMYAKC----------------------GSITE 580
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSL-------------LSGCSH 297
A F+ +S +++SW +IS ++Q G++E F + L L CSH
Sbjct: 581 AGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSH 640
Query: 298 SGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G V +G YF M ++ C++DLLG G L +A + I +MP +P ++W
Sbjct: 641 GGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQ 700
Query: 354 ALLGACCSHYNTKLAELVMRNLLQL 378
LLG C H N +L E+ R +L +
Sbjct: 701 TLLGGCRVHGNVELGEIAARKILSI 725
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 91/422 (21%), Positives = 161/422 (38%), Gaps = 103/422 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+++C L SL + + +HAQ++ + IF+ I+D Y VF +
Sbjct: 228 IQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQ 287
Query: 50 FTYNTMINGGV----------------RCLCVGN----------------IKMALHLHGL 77
++N MI+G C N + M +
Sbjct: 288 VSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNC 347
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF-LRMLNPSLFCWKFGIIRLLIMFQKMP 136
+ + + + IDM+ KCG++ A S F +N + P
Sbjct: 348 ASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGV---------------NTP 392
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
WN MIS ++ G E L ++++ +G Y + F+A A+ L++G
Sbjct: 393 ------WNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFG-- 444
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
RVVH M LKCG + + + + A+ Y++ G + F+
Sbjct: 445 ---RVVH--------------GMVLKCGLDLM--VVSVNNAIADAYSKCGFLEDVRKVFD 485
Query: 257 LMSRRNMISWMVLISAFSQAGVLE---------KPRFF----FFFVSLLSGCSHSGPVTK 303
M R+++SW L++A+SQ+ + E + F F F S+L C+ +
Sbjct: 486 RMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEY 545
Query: 304 GKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
G+ + K T C ++D+ G + EA K+ D++ S P V W A++
Sbjct: 546 GRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKI-SNPDIVSWTAIISGYA 604
Query: 361 SH 362
H
Sbjct: 605 QH 606
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 50/236 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV--KCGAVDYAESAFLRMLNPSLF 119
C G+I+ A +HGLV K F + + + HV KC S F
Sbjct: 128 CAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKC----------------SEF 171
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
G+ F +MP+R++ SW MI T HG F+ F E+ N G Y+
Sbjct: 172 RAACGV------FDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYS 225
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ + LE G +H+++V + +FV + L++MY K G IE S +
Sbjct: 226 AIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLG--SIEDSYWV----- 278
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFFFFFVSLLSG 294
F +M+ N +SW +IS + G+ LE F FV + +G
Sbjct: 279 ---------------FNMMTEHNQVSWNAMISGCTSNGLHLEA---FDLFVRMKNG 316
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 43/264 (16%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYL----FTYNTMING 58
ACG +P R + + + ++ S L D ++ FC++ + F Y+ +I
Sbjct: 174 ACGVFDEMP-QRNVFSWTV--MIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQS 230
Query: 59 GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL 118
C+ + ++++ +H + F + ++ S ++M+ K G++ E ++
Sbjct: 231 ---CIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSI---EDSY-------- 276
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
W +F M E + VSWN MIS T +G E F+ + N +
Sbjct: 277 --W---------VFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTL 325
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----------CNGI 228
+ A + D+ G + + + +V VG+ LIDMY KCG N I
Sbjct: 326 VSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFI 385
Query: 229 ESSIQIG-KALVTMYAEGGSTQKA 251
+ A+++ Y++ G +Q+A
Sbjct: 386 NCGVNTPWNAMISGYSQSGCSQEA 409
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 62/332 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVS-DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
V +++ +HGL + V D I S +DM+ KC D A+
Sbjct: 217 VEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQK--------------- 261
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+F +MP R++V+W +I+ + + + F E+ + ++ S
Sbjct: 262 -------VFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A V L G +H ++ ++ G+ LID+Y+KCGC
Sbjct: 315 ACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGC------------------ 356
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVS 290
++A L FE + +N+ +W +I+ F+ G F+ F++
Sbjct: 357 ----LEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMA 412
Query: 291 LLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LS C+H G V +G+ F +M +F ++ CMVDL G GLL EAK LI+ MP +
Sbjct: 413 VLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPME 472
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
PT V+WGAL G+C H + +L + +++L
Sbjct: 473 PTNVVWGALFGSCLLHKDYELGKYAASRVIKL 504
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 114/307 (37%), Gaps = 62/307 (20%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
H + KF SD + S I + G D+A +F
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASR----------------------LF 161
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++D+V+W MI R+G E + F+E+ G + M + A V D+
Sbjct: 162 DGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVR 221
Query: 193 WGPHLHSRVVHM-EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
+G +H + DVF+GS L+DMY KC C A
Sbjct: 222 FGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSC----------------------YDDA 259
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHS 298
F+ M RN+++W LI+ + Q+ +K F S+LS C+H
Sbjct: 260 QKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHV 319
Query: 299 GPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G + +G+ M K + T ++DL G L EA + + + K W A+
Sbjct: 320 GALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK-NVYTWTAM 378
Query: 356 LGACCSH 362
+ +H
Sbjct: 379 INGFAAH 385
>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 611
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 151/340 (44%), Gaps = 64/340 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+ ++ +H V K F S+ + S +D + +CG + A+
Sbjct: 226 IDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKR---------------- 269
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
F +M ++DL++WNT+IS L R E L F + GF + + + +A
Sbjct: 270 ------YFHEMEDKDLITWNTLISELERSDSS-EALLMFQRFESQGFVPNCYTFTSLVAA 322
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ L G LH R+ G ++++ AL+ MYA+
Sbjct: 323 CANIAALNCGQQLHGRIYR----------------------RGFNKNVELANALIDMYAK 360
Query: 245 GGSTQKADLAF-ELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
G ++ F E+ RRN++SW ++ + G + F F++
Sbjct: 361 CGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMA 420
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LS C H+G V KG YF M + C+VDLLG +G +GEA +L++ MP K
Sbjct: 421 VLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFK 480
Query: 347 PTCVIWGALLGACCSHYNTKL-AELVMRNLLQLDVKVFGS 385
P WGA+LGAC +H +T L + L + +++L ++ G+
Sbjct: 481 PDESTWGAILGACKAHKHTGLISRLAAKKVMELKPRMVGT 520
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 40/243 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPERD+V+W MI+ + F E++ G + ++ + ++
Sbjct: 67 LFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQGRSPNEFTLSSVLKSCRNMKV 126
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +G +H VV + G+E S+ + AL+ MYA T +
Sbjct: 127 LAYGALVHGVVVKL----------------------GMEGSLYVDNALMNMYATCSVTME 164
Query: 251 AD-LAFELMSRRNMISWMVLISAFSQAG------------VLEKPRFFFFFVSLLSGCSH 297
A L F + +N ++W LI+ F+ G +LE + +++ S
Sbjct: 165 AAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASA 224
Query: 298 S-GPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWG 353
S VT GK ++ K + M +L G L EAK+ EM K + W
Sbjct: 225 SIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDK-DLITWN 283
Query: 354 ALL 356
L+
Sbjct: 284 TLI 286
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/313 (18%), Positives = 120/313 (38%), Gaps = 59/313 (18%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG+V K + + ++M+ C E+AFL +F+
Sbjct: 133 VHGVVVKLGMEGSLYVDNALMNMYATCSVT--MEAAFL-------------------IFR 171
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+ ++ V+W T+I+ T G G L + ++ ++ A A AS+ +
Sbjct: 172 DIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASIDSVTT 231
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H+ VV ++ V + ++D Y +C G +A
Sbjct: 232 GKQIHASVVKRGFQSNLPVMNSILDFYCRC----------------------GYLSEAKR 269
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFF------------FFFVSLLSGCSHSGPV 301
F M +++I+W LIS ++ E F + F SL++ C++ +
Sbjct: 270 YFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAAL 329
Query: 302 TKGKHYFTAMAK--FTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G+ + + F ++D+ G + +++++ E+ + V W +++
Sbjct: 330 NCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIG 389
Query: 359 CCSH-YNTKLAEL 370
SH Y + EL
Sbjct: 390 YGSHGYGAEAVEL 402
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 63/226 (27%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSI-FLQLIDDDY----------RVFCDIGPRYL 49
++A S+ S+ ++IHA ++ S++ + I D Y R F ++ + L
Sbjct: 220 VRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDL 279
Query: 50 FTYNTMINGGVR-------------------------------CLCVGNIKMALHLHGLV 78
T+NT+I+ R C + + LHG +
Sbjct: 280 ITWNTLISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRI 339
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ F + +A + IDM+ KCG + +E FG I R
Sbjct: 340 YRRGFNKNVELANALIDMYAKCGDIPDSERV-------------FGEIE--------ERR 378
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+LVSW +M+ HG+G E + F ++ + G +++ SA
Sbjct: 379 NLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSA 424
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 168/375 (44%), Gaps = 51/375 (13%)
Query: 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLC--VGNIKMALHLHGLVKKFYFVSDESIA 90
L+D+ +++F ++ + + MI + C GN++ ++ + + D +
Sbjct: 195 LLDEAFKLFEEMKDSNVMP-DEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLL 253
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERDLV 141
+ + M+ G +D A F +M +LF K G + ++F + +DLV
Sbjct: 254 TALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLV 313
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
W TMIS E L F E+ G + + SA ++ L+ +H R
Sbjct: 314 CWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVH-RY 372
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
H+ NG+ES + I AL+ MYA+ G A FE M R
Sbjct: 373 THL---------------------NGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTR 411
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF 308
N++SW +I+AF+ G F FV +L GCSHSG V +GK F
Sbjct: 412 NVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIF 471
Query: 309 TAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
+M ++ T ++ CMVDL G + LL EA ++I+ MP P VIWG+L+ AC H
Sbjct: 472 ASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGE 531
Query: 365 TKLAELVMRNLLQLD 379
+L EL + +L+L+
Sbjct: 532 LELGELAAKRILKLE 546
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 133/317 (41%), Gaps = 48/317 (15%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+ LHG K +SD + +DM+ CG ++YA +
Sbjct: 133 GMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARN---------------------- 170
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M +RD+V+WNTMI R G E F E+ + M+ SA +
Sbjct: 171 VFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGN 230
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE---------SSIQIGKALVTM 241
+ + ++ ++ + +D + + L+ MY GC + ++ + A+V+
Sbjct: 231 MRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSG 290
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFF 288
Y++ G A + F+ ++++ W +ISA++++ E R F
Sbjct: 291 YSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTM 350
Query: 289 VSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPS 345
+S++S C + G + K K H +T + ++++ G L A+ + ++MP+
Sbjct: 351 LSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPT 410
Query: 346 KPTCVIWGALLGACCSH 362
+ V W +++ A H
Sbjct: 411 R-NVVSWSSMINAFAMH 426
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
P + + +N+++ L+R G T+ + + + G + + A + V L G
Sbjct: 75 PLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGM 134
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
LH + D FV +GL+DMY C G A F
Sbjct: 135 ELHGFAFKIATLSDPFVETGLMDMYAAC----------------------GRINYARNVF 172
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEK 281
+ MS+R++++W +I + + G+L++
Sbjct: 173 DEMSQRDVVTWNTMIERYCRFGLLDE 198
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 156/365 (42%), Gaps = 54/365 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT ++++ C + +KM +H + + I + I + K G+V+ A
Sbjct: 297 FTVTSVLSA---CANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRI 353
Query: 110 FLRMLNPSLFCWKF-----GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFE 158
+ + L F G ++L +F M RD+++W MI ++G E
Sbjct: 354 MDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDE 413
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
+ F + G +S A SA AS+ L +G +H R + SL
Sbjct: 414 AMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIR---SLQ--------- 461
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAG 277
E S+ + A++T+YA GS A F+ + R+ ++W +I A +Q G
Sbjct: 462 ----------EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHG 511
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYF 320
+ E+ F ++ + S C+H+G + KGK Y+ M ++
Sbjct: 512 LGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHY 571
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
CMVDLL +GLL EA + I MP P V+WG+LL AC N LAEL LL +D
Sbjct: 572 ACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDP 631
Query: 381 KVFGS 385
G+
Sbjct: 632 DNSGA 636
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 27/278 (9%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F +MPERD VSW M+ L R G ++ + TF+++ G S + S+ A+
Sbjct: 118 VVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATE 177
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIG-----KALVT 240
G +HS V+ + S V V + ++ MY KCG + +++ A+V+
Sbjct: 178 ARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVS 237
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF-------------F 286
+Y G A FE M R+++SW +I+ ++Q G+ + +FF F
Sbjct: 238 LYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEF 297
Query: 287 FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEM 343
S+LS C++ + GK H + Y+ + ++ SG + A++++D+
Sbjct: 298 TVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKA 357
Query: 344 PSKPTCVI-WGALLGACCSHYNTKLAELVMRNLLQLDV 380
VI + ALL +TK A V + DV
Sbjct: 358 VVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDV 395
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 152/352 (43%), Gaps = 51/352 (14%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF--------GI 125
+H V K S +A S + M+ KCG + A + F RM S W G
Sbjct: 185 VHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGR 244
Query: 126 IRL-LIMFQKMPERDLVSWNTMISILTRHGFG------FETLCTFIELWNHGFGLSSMLY 178
+ L L MF+ M ER +VSWN +I+ ++G F + T + F ++S+L
Sbjct: 245 MDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVL- 303
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK-- 236
SA A++ L+ G +HS ++ + + LI Y K G +E++ +I
Sbjct: 304 ----SACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSG--SVETARRIMDKA 357
Query: 237 -----------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
AL+ Y + G T++A F++M+ R++I+W +I + Q G ++
Sbjct: 358 VVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMEL 417
Query: 286 F-------------FFVSLLSGCSHSGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGL 329
F ++LS C+ + GK + A+ V ++ +
Sbjct: 418 FRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYAR 477
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
SG + A+++ D++ + V W +++ A H + A ++ +L++ VK
Sbjct: 478 SGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVK 529
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 188/442 (42%), Gaps = 110/442 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KAC + + K+H+ ++ + F+++ ID+ ++VF DI +
Sbjct: 115 LKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNF 174
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++ I+G G+R C G+++ +
Sbjct: 175 ASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEY 234
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ + V + +A + +D + KCG ++ A S F ML E
Sbjct: 235 ITENGMVRNVFVATALVDFYGKCGNMERARSVFDGML----------------------E 272
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS--SMLYATAFSARASVYDL-EWG 194
+++VSW++MI +G E L F ++ N G +M+ AR +L +W
Sbjct: 273 KNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWA 332
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+L + ++ S+ +G+ LIDMY KC G +A
Sbjct: 333 SNLINGNEFLDNSV---LGTALIDMYAKC----------------------GRMDRAWEV 367
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
F M +++ + W IS + +G ++ F FV LL C+H+G V
Sbjct: 368 FRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLV 427
Query: 302 TKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+G+ YF +M FT T ++ CMVDLLG +G L EA +LI MP + ++WGALLG
Sbjct: 428 EEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLG 487
Query: 358 ACCSHYNTKLAELVMRNLLQLD 379
C H +T+L E+V++ L+ L+
Sbjct: 488 GCRLHRDTQLVEVVLKKLIALE 509
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 96/249 (38%), Gaps = 41/249 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+ + E ++ +NTMI L + E++ + + G S + A A V D
Sbjct: 64 ILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLD 123
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
E G +HS VV D FV LI++Y KCG I+++ ++
Sbjct: 124 SELGVKMHSLVVKAGCEADAFVKISLINLYTKCGF--IDNAFKV---------------- 165
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-----------VLE---KPRFFFFFVSLLSGCS 296
F+ + +N SW IS + G +LE +P F V +LS C
Sbjct: 166 ----FDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPD-SFSLVEVLSACK 220
Query: 297 HSGPVTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G + G+ Y T +VD G G + A+ + D M K V W
Sbjct: 221 RTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEK-NIVSWS 279
Query: 354 ALLGACCSH 362
+++ S+
Sbjct: 280 SMIQGYASN 288
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 179/426 (42%), Gaps = 83/426 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLIDD-----------DYRVFCDIGPR 47
+K C LP+ +HAQ+ +S +F+ LID ++F +G R
Sbjct: 125 LKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGAR 184
Query: 48 Y-LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSI------DMHVKC 100
+ ++N+MI+G L GL ++ V DE K I D +VK
Sbjct: 185 RDVVSWNSMISG-------------LAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKV 231
Query: 101 GAVDYAESAFLRMLNPSLFCW--------KFGIIRLLIM-FQKMPERDLVSWNTMISILT 151
G +D A F M ++ W K G + + M F KMP ++LVSW ++S
Sbjct: 232 GKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFA 291
Query: 152 RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211
G E + F ++ L + + +A A L G +H+ + +
Sbjct: 292 EKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKN-------- 343
Query: 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271
N + + +I ALV MYA+ G A F + ++++SW ++
Sbjct: 344 --------------NNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQ 389
Query: 272 AFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC 318
+ G K F + +L C+H+G + G YF+ M + YT
Sbjct: 390 GLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMER-DYTL 448
Query: 319 -----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
++ CMVDLLG G L EA +LI MP P +IWG LLGAC H +LA V+
Sbjct: 449 VPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLD 508
Query: 374 NLLQLD 379
+L++L+
Sbjct: 509 HLVELE 514
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 153/364 (42%), Gaps = 65/364 (17%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE---------SIAKSSIDMHVKC 100
FTY ++++ C G LHG Y + E S+ + ++ KC
Sbjct: 292 FTYTSVLSA---CANAG-----FFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKC 343
Query: 101 GAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILT 151
G VD A F +M L W I F++MPER+L++W MIS L
Sbjct: 344 GKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLA 403
Query: 152 RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211
++GFG E+L F + + GF +A A A A + L G LH+++V + +
Sbjct: 404 QNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLS 463
Query: 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271
G+ LI MY KCG + A F M + +SW +I+
Sbjct: 464 AGNALITMYAKCGV----------------------VEAAHCLFLTMPYLDSVSWNAMIA 501
Query: 272 AFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC 318
A Q G + F F+++LS CSH+G V +G YF +M+ C
Sbjct: 502 ALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGIC 561
Query: 319 ----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374
++ M+DLL +G EAK +I+ MP +P IW ALL C H N L
Sbjct: 562 PGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAER 621
Query: 375 LLQL 378
L +L
Sbjct: 622 LFEL 625
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 34/277 (12%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
M E+ +V+WN MIS HGF E L F +++ G Y + SA A+ G
Sbjct: 251 MTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHG 310
Query: 195 PHLHSRVVHME--PSLD--VFVGSGLIDMYLKCGCNGIESSIQI-----------GKALV 239
+H+ ++ E PSLD + V + L +Y KCG ++ + Q+ A++
Sbjct: 311 KQVHAYILRTEPRPSLDFSLSVNNALATLYWKCG--KVDEARQVFNQMPVKDLVSWNAIL 368
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------F 286
+ Y G +A FE M RN+++W V+IS +Q G E+ + F +
Sbjct: 369 SGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDY 428
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEM 343
F + C+ + G+ + + + ++ + G++ A L M
Sbjct: 429 AFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTM 488
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
P + V W A++ A H + A + +L+ D+
Sbjct: 489 PYLDS-VSWNAMIAALGQHGHGAQALELFELMLKEDI 524
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 116/291 (39%), Gaps = 45/291 (15%)
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA-SVYDLEWGPH 196
RD V +N MI+ + + GF + F +L +GF + + + A A V D +
Sbjct: 112 RDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQ 171
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA------------------L 238
+H VV V + L+ +++KC + + SS + A +
Sbjct: 172 IHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTM 231
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------ 285
+ Y G A + M+ + +++W +IS + G LE F
Sbjct: 232 IAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDE 291
Query: 286 FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVCMVD-----LLGLSGLLGEAKK 338
F + S+LS C+++G GK H + + + F V+ L G + EA++
Sbjct: 292 FTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQ 351
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLA-----ELVMRNLLQLDVKVFG 384
+ ++MP K V W A+L + A E+ RNLL V + G
Sbjct: 352 VFNQMPVK-DLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISG 401
>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 700
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 155/354 (43%), Gaps = 62/354 (17%)
Query: 44 IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
I R T+I+ C N++ H+H L + F D +++ + +DM++KC
Sbjct: 300 IDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKC--- 356
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
F + +F +MP++D+VSW + S G ++L F
Sbjct: 357 -------------------FSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVF 397
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
+ ++G ++ +A + + ++ LH+ V + F+G+ LI++Y KC
Sbjct: 398 CNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKC 457
Query: 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
S A+ F+ M R+++++W +I+A+ G E+
Sbjct: 458 S----------------------SIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEAL 495
Query: 284 FFFF--------------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVD 325
F+ FVS+LS CSH+G + +G F M T ++ MVD
Sbjct: 496 KLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVD 555
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LLG G L +A +I+EMP + +WGALLGAC H N K+ EL NL LD
Sbjct: 556 LLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLD 609
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 135/321 (42%), Gaps = 61/321 (19%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T+++ C + + + +HG VK+ F + +A S ++++ K G++ A +
Sbjct: 209 TLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAAN----- 263
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F++MP +D++SW++M++ +G L F E+ + L
Sbjct: 264 -----------------LFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIEL 306
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ + +A A AS +LE G H+H V+ LD+ V + L+DMY+KC
Sbjct: 307 NRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKC---------- 356
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
S + A F M +++++SW VL S +++ G+ K F
Sbjct: 357 ------------FSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYG 404
Query: 287 ------FFVSLLSGCSHSGPVTKG--KHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAK 337
V +L+ S G V + H F + + F + +++L + A
Sbjct: 405 TRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNAN 464
Query: 338 KLIDEMPSKPTCVIWGALLGA 358
K+ M K V W +++ A
Sbjct: 465 KVFKGMRRKDV-VTWSSIIAA 484
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 44/284 (15%)
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF 155
+H +C V A +F+ L+ + +F++ P + + WN ++ G
Sbjct: 23 LHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGK 82
Query: 156 GFETLCTFIELWNHGFGLS---SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
ETL F ++ + + A + + + LE G +H + + D+FV
Sbjct: 83 WVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFV 142
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
GS LI++Y KCG Q+ A+ F +++++ W +I+
Sbjct: 143 GSALIELYSKCG--------QMNDAVKV--------------FTEYPKQDVVLWTSIITG 180
Query: 273 FSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGK--HYFTAMAKF-T 315
+ Q G E FF VS S C+ G+ H F F T
Sbjct: 181 YEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDT 240
Query: 316 YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
C +++L G +G + A L EMP K + W +++ AC
Sbjct: 241 KLCLANSILNLYGKTGSIRSAANLFREMPYK-DIISWSSMV-AC 282
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/311 (18%), Positives = 113/311 (36%), Gaps = 62/311 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +HG +KK +D + + I+++ KCG ++ A
Sbjct: 115 CSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDA--------------- 159
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN-HGFGLSSMLYAT 180
+ +F + P++D+V W ++I+ ++G L F + + +
Sbjct: 160 -------VKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVS 212
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A SA A + D G +H V G ++ + + +++
Sbjct: 213 AASACAQLSDFNLGRSVHGFVKR----------------------RGFDTKLCLANSILN 250
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
+Y + GS + A F M +++ISW +++ ++ G F
Sbjct: 251 LYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVT 310
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLID---EMP 344
+S L C+ S + +GKH + + L+ + K ID MP
Sbjct: 311 VISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMP 370
Query: 345 SKPTCVIWGAL 355
K V W L
Sbjct: 371 KKDV-VSWAVL 380
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 146/340 (42%), Gaps = 52/340 (15%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW-----------K 122
+HG K+ F D + I M+ + G +D F + P L C
Sbjct: 133 VHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGD 192
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
G R L F KM +D ++WN MIS + G E L F + G ++ + +
Sbjct: 193 VGFARKL--FDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVL 250
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA + + L+ G H+ + N + ++ +G AL+ MY
Sbjct: 251 SACSHLGALDQGRWAHAYIER----------------------NKLRMTLTLGTALIDMY 288
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
A+ G+ KA F M +N+ +W I + G EK F FV
Sbjct: 289 AKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFV 348
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
S+L GCS G V +G+ +F +M+K ++ CMVDL G +G L EA I+ MP
Sbjct: 349 SVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPV 408
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+P WGALL AC + N ++ EL R +++L+ K G+
Sbjct: 409 RPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGA 448
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 153/349 (43%), Gaps = 62/349 (17%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T++N V C G +K+ H LV F + I S + M+ KCG V+ A
Sbjct: 110 TLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARR----- 164
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F +MPER++V W +MI+ T+ G E + F ++ G
Sbjct: 165 -----------------VFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKA 207
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
AT S+ + L+ G +LH+ C +G+ +
Sbjct: 208 DDATIATVVSSCGQMGALDLGRYLHA----------------------YCDGHGLGKELS 245
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+ +L+ MY++ G KA F +++R++ +W V+I F+ G+ + F
Sbjct: 246 VKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGED 305
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGE 335
F+ +L+ CSH G V +G H+F M+K ++ CMVDLLG + LL E
Sbjct: 306 KVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAE 365
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
A++ I +MP P V+W +LL AC + LAE + QL+ K G
Sbjct: 366 AEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCG 414
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 45/228 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ N I+ R V ++ + H L K SD + + I+M+ C +Y SA
Sbjct: 6 YSLNIAISAAAR---VPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSC---NYPASA 59
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
R++ S W D+VSWNT+I+ R G + L +F ++
Sbjct: 60 --RLVLDSAPRWA---------------SDVVSWNTIIAGYIRGGMPNKALQSFHQMAKE 102
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
L + A A ++ G H+ VV ++ ++GS L+ MY KCG
Sbjct: 103 QVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGM---- 158
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
++A F M RN++ W +I+ +Q+G
Sbjct: 159 ------------------VEEARRVFNRMPERNVVCWTSMIAGCTQSG 188
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 168/418 (40%), Gaps = 117/418 (27%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+KACG++K L + R+ HAQ R FC +++ NTMI
Sbjct: 156 LKACGTMKDLNLGRQFHAQTFR---------------LRGFC-----FVYVGNTMI---- 191
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
DM+VKC ++D A F M +
Sbjct: 192 ----------------------------------DMYVKCESIDCARKVFDEMPERDVIS 217
Query: 121 W--------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W + G + +F+ +P +D+V+W M++ ++ E L F + G
Sbjct: 218 WTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 277
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHM------EPSLDVFVGSGLIDMYLKCGC 225
+ A SA A + ++ R V + PS V +GS LIDMY KCG
Sbjct: 278 RADEVTVAGYISACAQLGASKYA----DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCG- 332
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+E ++ + F M+ +N+ ++ +I + G ++
Sbjct: 333 -NVEEAVNV--------------------FMSMNNKNVFTYSSMILGLATHGRAQEALHL 371
Query: 286 FF--------------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLL 327
F FV L CSHSG V +G+ F +M + ++ CMVDLL
Sbjct: 372 FHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLL 431
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
G +G L EA +LI M +P +WGALLGAC H N ++AE+ +L +L+ + G+
Sbjct: 432 GRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGN 489
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------- 225
S ++ A ++ DL G H++ + V+VG+ +IDMY+KC
Sbjct: 149 SFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFD 208
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
E + L+ YA G+ + A FE + ++M++W +++ F+Q ++ +
Sbjct: 209 EMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 268
Query: 286 F 286
F
Sbjct: 269 F 269
>gi|115440947|ref|NP_001044753.1| Os01g0839400 [Oryza sativa Japonica Group]
gi|15623829|dbj|BAB67888.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|21104616|dbj|BAB93208.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534284|dbj|BAF06667.1| Os01g0839400 [Oryza sativa Japonica Group]
gi|125572581|gb|EAZ14096.1| hypothetical protein OsJ_04019 [Oryza sativa Japonica Group]
Length = 456
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 157/358 (43%), Gaps = 51/358 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T++ + ++++ LH V K S+ + + +D + K G+V A+ A
Sbjct: 42 FTFGTILQSAS---ALRDLRVGAQLHACVAKLGLCSNVFVGSALVDHYAKMGSVREAQGA 98
Query: 110 FLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETL 160
P++ + I L +F+ MPER+++SWN MI ++ G E +
Sbjct: 99 LQDTREPNVVSYTALIAGFLKNGMSGDAARLFRCMPERNVISWNAMIGGSSKAGLNEEAV 158
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F+E+ G + + ++ A+ L G +H+ + LDVF G+ L+ Y
Sbjct: 159 NLFLEMCREGVRPNESTFPCLLTSVANAGALGVGRSIHASAIKFLGKLDVFAGNSLVSFY 218
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+C GS + LAF+ + +N++SW LI ++Q G E
Sbjct: 219 ARC----------------------GSLDDSVLAFKKIKNKNVVSWNALICGYAQNGRGE 256
Query: 281 KPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTA----MAKFTYTCYFVCM 323
+ F + LL GC+H+G V +G F ++ C+
Sbjct: 257 EALDAFRRMKATGLKLDRVTLLGLLFGCNHAGLVDEGYSLFRTAEMEQPGVLRPEHYACV 316
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
VDL + +AK+ ++ +P +P W +L+G C H+N +LA+ V +++ LD K
Sbjct: 317 VDLFSRAKRFDDAKRFLENLPFEPGIGFWKSLIGGCQIHWNRELAKSVAKHIHALDPK 374
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 22/202 (10%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP RD+VS I LTR G + + F + G + + T + +++ DL G
Sbjct: 1 MPHRDVVSATAAIGALTRSGRHRDAVALFSGILGDGIVPNEFTFGTILQSASALRDLRVG 60
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEG 245
LH+ V + +VFVGS L+D Y K G + E ++ AL+ + +
Sbjct: 61 AQLHACVAKLGLCSNVFVGSALVDHYAKMGSVREAQGALQDTREPNVVSYTALIAGFLKN 120
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLL 292
G + A F M RN+ISW +I S+AG+ E+ F F LL
Sbjct: 121 GMSGDAARLFRCMPERNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLL 180
Query: 293 SGCSHSGPVTKGKHYFTAMAKF 314
+ +++G + G+ + KF
Sbjct: 181 TSVANAGALGVGRSIHASAIKF 202
>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
gi|238005588|gb|ACR33829.1| unknown [Zea mays]
gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
Length = 569
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 144/321 (44%), Gaps = 61/321 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG V + F ++ +A + I M+ KCG++ A++ +F+
Sbjct: 245 VHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQT----------------------LFE 282
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
MP R L SWNTM+++ +H E + F + G + + SA A L+
Sbjct: 283 GMPARSLASWNTMVAMYEQHADVVEAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALQT 342
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H + D +G+ L+DMY KC G A
Sbjct: 343 GKWVHELARNHGLDTDARIGNVLVDMYAKC----------------------GEIASARN 380
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGP 300
F+ + R+++SW +ISA++ G E+ + F F F ++L C HSG
Sbjct: 381 VFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLMKNEGVRPNSFTFTAVLVACGHSGL 440
Query: 301 VTKG-KHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V +G KH+ + ++ + + ++ CMVD+LG +G L EA ++I M P +WGA L
Sbjct: 441 VEEGLKHFNSILSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVWGAFL 500
Query: 357 GACCSHYNTKLAELVMRNLLQ 377
C H N +LAE V R+L Q
Sbjct: 501 AGCKLHGNLELAEFVARDLFQ 521
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 31/168 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF--LRMLNPSLF 119
C G ++ +H L + +D I +DM+ KCG + A + F LRM
Sbjct: 334 CARSGALQTGKWVHELARNHGLDTDARIGNVLVDMYAKCGEIASARNVFDCLRM------ 387
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
R +VSW+ MIS HG E L F + N G +S +
Sbjct: 388 ------------------RSVVSWSAMISAYANHGASEEALKLFSLMKNEGVRPNSFTFT 429
Query: 180 TAFSARASVYDLEWG-PHLHSRV--VHMEPSLDVFVGSGLIDMYLKCG 224
A +E G H +S + M P+L+ + + ++DM + G
Sbjct: 430 AVLVACGHSGLVEEGLKHFNSILSDYQMSPTLEHY--ACMVDMLGRAG 475
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 26/149 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGF--ETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F P RD WNT++ + +TL + + G Y A A+
Sbjct: 74 VFDATPVRDAYMWNTLLRAHSHSQLSHAADTLALYKRMRAAGVAPDHYTYPIVLPACAAA 133
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+L G +H VV + D FV S AL+TMY + G
Sbjct: 134 RELWLGRAVHGDVVRFALAGDGFVHS----------------------ALITMYFQEGEV 171
Query: 249 QKADLAFELM--SRRNMISWMVLISAFSQ 275
A+L F S R ++SW +++ + Q
Sbjct: 172 ADAELVFAESHGSSRTVVSWTSMVAGYVQ 200
>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 54/358 (15%)
Query: 50 FTYNTMINGGVRCLCVG--NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
F ++++I C +G ++K+ LH F D+ + S +DM+ K DY
Sbjct: 110 FVFSSLIKA---CANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGR 166
Query: 108 SAFLRMLNPSLFCWKFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFE 158
+ F + S W I + L +F++ P ++L +W +IS L + G +
Sbjct: 167 AVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNAND 226
Query: 159 TLCTFIELWNHGFGLSS-MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
L F+E+ G ++ ++ ++ A A+ E G +H V+ +
Sbjct: 227 ALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITL------------- 273
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
G ES + I ALV MYA+ A F M R++++SW +I +Q G
Sbjct: 274 ---------GYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHG 324
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYF 320
+ E+ + FV L+ CSH G V+KG+ F +M + ++
Sbjct: 325 LAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHY 384
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
C++DL SG L EA+ LI MP KP W ALL AC H NTK+A + +LL L
Sbjct: 385 TCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDL 442
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 122/324 (37%), Gaps = 51/324 (15%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
N +A LH + K K+ ID + KCG + A
Sbjct: 23 NPFIAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDA-------------------- 62
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
L +F +P++D V+W T++S + + + + G ++++ A A
Sbjct: 63 --LKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACA 120
Query: 187 SV--YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK-----CGCNGIESSIQIGK--- 236
++ ++ G LH+R + D V S L+DMY K G +S ++
Sbjct: 121 NLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISW 180
Query: 237 -ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------- 286
A+++ YA G +A F +N+ +W LIS Q+G + F
Sbjct: 181 TAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVS 240
Query: 287 -----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLLGEAKK 338
S++ C++S GK + Y +C F+ +VD+ + AK
Sbjct: 241 IADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKY 300
Query: 339 LIDEMPSKPTCVIWGALLGACCSH 362
+ EM K V W +++ H
Sbjct: 301 IFCEMRRK-DVVSWTSIIVGTAQH 323
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 158/355 (44%), Gaps = 71/355 (20%)
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
+FTY++++ C + N++ LH + K SD + + ID++ K +D A
Sbjct: 155 MFTYSSVLRA---CDGLPNLR---QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNA-- 206
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
L +F +MP RDLV WN++I ++ G E L F +
Sbjct: 207 --------------------LGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKR 246
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
GF + A + LE G +H V+ + D+ + + LIDMY KCG
Sbjct: 247 AGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQ--DLILNNALIDMYCKCG---- 300
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE---- 280
S + A+ AF M +++ISW +++ +Q G LE
Sbjct: 301 ------------------SLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFES 342
Query: 281 ------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLS 330
+P + + +L CSH+G V KG +YF +M K ++ C++DLLG +
Sbjct: 343 MKESGSRPNYITV-LGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRA 401
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
G L EA KLI EM +P V W LLGAC H N LA + +++L+ + G+
Sbjct: 402 GRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGT 456
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 72/214 (33%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
++AC LP R++H +I T L S +F++ +D+ VF ++ R L
Sbjct: 162 LRAC---DGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDL 218
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS---------------- 93
+N++I GG GN AL+L +K+ F++D++ S
Sbjct: 219 VVWNSII-GGFAQNSDGN--EALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQV 275
Query: 94 -----------------IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
IDM+ KCG+++ A SAF RM+
Sbjct: 276 HVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMV---------------------- 313
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
E+D++SW+TM++ L ++G+ + L F + G
Sbjct: 314 EKDVISWSTMVAGLAQNGYSRQALELFESMKESG 347
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 26/145 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER++VSW TMIS + + + L I ++ G + Y++ A + +
Sbjct: 112 LFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPN 170
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L LH ++ DVFV S LID+Y K + +++++ +
Sbjct: 171 LR---QLHCGIIKTGLESDVFVRSALIDVYSK--WSDLDNALGV---------------- 209
Query: 251 ADLAFELMSRRNMISWMVLISAFSQ 275
F+ M R+++ W +I F+Q
Sbjct: 210 ----FDEMPTRDLVVWNSIIGGFAQ 230
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 39/159 (24%)
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS---------- 274
C G E + + L+ MY + ++A+ F+ M RN++SW +ISA+S
Sbjct: 83 CKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKC 142
Query: 275 -----QAGVLEKPRFFFFFVSLLSGCS--------HSGPVTKG--KHYFTAMAKFTYTCY 319
+ GV +P F + S+L C H G + G F A
Sbjct: 143 LILMFREGV--RPN-MFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSA------- 192
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
++D+ L A + DEMP++ V+W +++G
Sbjct: 193 ---LIDVYSKWSDLDNALGVFDEMPTR-DLVVWNSIIGG 227
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 156/336 (46%), Gaps = 74/336 (22%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H LV K +A + ID + K G D G R L
Sbjct: 214 IHALVSKIGLDGQTGVANTIIDAYAKGGGHD------------------LGAARKLF--- 252
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-------FGLSSMLYATAFSARA 186
M +RD+VSWNTMI++ ++G E L + ++ G LS++L A A +
Sbjct: 253 DMMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGA- 311
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
++ G +H++VV M G+E ++ +G ++V MY++ G
Sbjct: 312 ----IQTGKRIHNQVVRM----------------------GLEDNVYVGTSVVDMYSKCG 345
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLL 292
+ A AF+ + +N++SW +I+ + G + KP + F +++L
Sbjct: 346 KVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITF-ITVL 404
Query: 293 SGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
+ CSH+G +++G++++ M +F ++ CMVDLLG +G L EA LI EM KP
Sbjct: 405 AACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 464
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+WGALL AC + N +LA++ L +LD G
Sbjct: 465 AALWGALLSACRIYKNVELAKICAERLFELDATNSG 500
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 39/192 (20%)
Query: 49 LFTYNTMINGGVRCLCV------------GNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
L++ ++ G VRC V G I+ +H V + + + S +DM
Sbjct: 281 LYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDM 340
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ KCG V+ A WK FQK+ ++++SW+ MI+ HG+G
Sbjct: 341 YSKCGKVEMA--------------WK--------AFQKIKGKNILSWSAMIAGYGMHGYG 378
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV---VHMEPSLDVFVG 213
E L F ++ G + + + T +A + L G + ++ + +EP ++ +
Sbjct: 379 QEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHY-- 436
Query: 214 SGLIDMYLKCGC 225
++D+ + GC
Sbjct: 437 GCMVDLLGRAGC 448
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/343 (30%), Positives = 151/343 (44%), Gaps = 51/343 (14%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------K 122
A LH V KF F D + I ++ G++D A F M +P++ W +
Sbjct: 119 AKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQ 178
Query: 123 FGII-RLLIMFQKMP-ERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYA 179
+G++ +F+ MP +++ VSWN MI+ + E F + L + A
Sbjct: 179 WGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAA 238
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
T SA V LE G +H V LD + + +IDMY KCGC
Sbjct: 239 TMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGC-------------- 284
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------- 285
KA F + + + SW +I F+ G E R F
Sbjct: 285 --------LDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDS 336
Query: 286 FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLID 341
FV++L+ C+HSG V +G +YF M ++ CMVDLL +G L EAKK+ID
Sbjct: 337 ITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVID 396
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
EMP P + GALLGAC H N +L E V +++LD + G
Sbjct: 397 EMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSG 439
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 25/117 (21%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F TM++ C VG ++ + +H V+K V D +A + IDM+ KCG +D A
Sbjct: 235 FVAATMLSA---CTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKA--- 288
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
+F + + + SWN MI HG G + + F E+
Sbjct: 289 -------------------FHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEM 326
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 160/369 (43%), Gaps = 62/369 (16%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH-- 97
VF + L ++N+M+ G V C G ++ A ++ F + + + SI +
Sbjct: 167 VFDGFSEKDLVSWNSMLGGYVWC---GEMENAQNM------FDEMPERDVVSWSIMIDGY 217
Query: 98 -VKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLLI-MFQKMPERDLVSWNTMI 147
K G V+ A F M L W K G + + +F KM +++++SW+ MI
Sbjct: 218 GKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMI 277
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
H E L F ++ G + A SA + + L+ G +H +
Sbjct: 278 DGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRML 337
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
LD+ V + L+DMYLKCG S +A F M RN++SW
Sbjct: 338 LDIVVQTALVDMYLKCG----------------------SXDEARXIFNSMPERNVVSWN 375
Query: 268 VLI-------------SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
V+I F Q + P F+ +L CSH+ VT+G H F M K
Sbjct: 376 VMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQM-KG 434
Query: 315 TYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
Y ++ C+VDLLG +G L + + +I MP KP +WG+LL AC H N LAE
Sbjct: 435 VYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAE 494
Query: 370 LVMRNLLQL 378
+V+ L +L
Sbjct: 495 IVVERLAEL 503
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 117/316 (37%), Gaps = 57/316 (18%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHV-KCGAVDYAESAFLRMLNPSLF-CWKFGIIRLL 129
L +H + +SD A +D V K V+YAE F ++ P+ F C
Sbjct: 28 LQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFIC--------- 78
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
NTM+ T L + E+ G + Y A ++
Sbjct: 79 --------------NTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMC 124
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG---KALVTM----- 241
L G + V DVFV +GLI MY +CG G ++ G K LV+
Sbjct: 125 GLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLG 184
Query: 242 -YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGP 300
Y G + A F+ M R+++SW ++I + + G
Sbjct: 185 GYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGK---------------------KMGE 223
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
V + + +F +M + M+D G + A+++ B+M K + W ++
Sbjct: 224 VNRARVFFDSMPTRDLVSWN-SMIDGYAKVGEMEVAREIFBKMLQK-NVISWSIMIDGYA 281
Query: 361 SHYNTKLAELVMRNLL 376
H ++K A + R +L
Sbjct: 282 XHRDSKEALNLFRQML 297
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 154/337 (45%), Gaps = 62/337 (18%)
Query: 60 VRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
V C +G + M +HGLV K F + + +DM+VKC + A
Sbjct: 211 VACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARK----------- 259
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
+F ++P+RD+VSW ++IS L + ++L F ++ G ++
Sbjct: 260 -----------LFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILT 308
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ SA AS+ L++G + + GIE I IG ALV
Sbjct: 309 SVLSACASLGALDYGRWVQEYIER----------------------QGIEWDIHIGTALV 346
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
MYA+ G + A F + RN+ +W L+ + G + F
Sbjct: 347 DMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEV 406
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAM--AKFTYTC---YFVCMVDLLGLSGLLGEAKKLID 341
F+++L+ C HSG V +G+ YF M F ++ ++ CM+DLL +GLL EA K I
Sbjct: 407 TFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIR 466
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
MP P +IWGALL AC ++ N +L++ ++ +LL+L
Sbjct: 467 NMPLPPDVLIWGALLSACKANGNVELSQEILSHLLEL 503
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 95/248 (38%), Gaps = 42/248 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M RD+VSW +IS R G E + F+++ + + + A +
Sbjct: 162 VFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGY 218
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H V + + VG+ L+DMY+KC C +
Sbjct: 219 LSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCEC----------------------LCE 256
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A F+ + R+++SW +IS Q + F+ S+LS C+
Sbjct: 257 ARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACAS 316
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G + G+ + + + +VD+ G + A + + +P++ W A
Sbjct: 317 LGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNR-NIFTWNA 375
Query: 355 LLGACCSH 362
LLG H
Sbjct: 376 LLGGLAMH 383
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 87/229 (37%), Gaps = 36/229 (15%)
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
+ +NT+I+ + + +GF + A ++ G +H
Sbjct: 71 LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGV 130
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
V M D++V + L+ Y CG G A F+ M
Sbjct: 131 AVKMGFLCDLYVQNSLLHFYSVCGKWG----------------------GAGRVFDEMLV 168
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFFF----------FVSLLSGCSHSGPVTKGKHYFTA 310
R+++SW LIS + + G+ ++ F FVS+L C G ++ GK
Sbjct: 169 RDVVSWTGLISGYVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGL 228
Query: 311 MAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ K + V +VD+ L EA+KL DE+P + V W +++
Sbjct: 229 VYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDI-VSWTSII 276
>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
Length = 645
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 141/309 (45%), Gaps = 63/309 (20%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+A +++D++VKCG + A +F KM +D V+W M+
Sbjct: 209 VATAAVDLYVKCGEMAKARE----------------------VFDKMRHKDAVAWGAMVG 246
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+G E L F+ + G A A SA + L+ G R+V + L
Sbjct: 247 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFL 305
Query: 209 DVFV-GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
D V G+ LIDMY KC GST +A + F+ M ++++I W
Sbjct: 306 DNPVLGTALIDMYAKC----------------------GSTVEAWVVFQQMRKKDIIVWN 343
Query: 268 VLI----------SAFSQAGVLEKPRFFF---FFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+I AF+ G +EK F+ LL C+H+G + G+ YF M K
Sbjct: 344 AMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 403
Query: 315 TYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
+ ++ CMVDLL +GLL EA +L+D+MP VI GALLG C H NT+LAE
Sbjct: 404 YHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEH 463
Query: 371 VMRNLLQLD 379
V++ L+ L+
Sbjct: 464 VLKQLILLE 472
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 39/202 (19%)
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA + L G LH+R + + + V + L+ +Y KCG
Sbjct: 79 SASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGL----------------- 121
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF-------------FFFV 289
+A F+ M + + W LI+A+ AG L + F V
Sbjct: 122 -----LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAV 176
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFVCM--VDLLGLSGLLGEAKKLIDEMPSK 346
+L+ C+ + G+ + A + FV VDL G + +A+++ D+M K
Sbjct: 177 RVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHK 236
Query: 347 PTCVIWGALLGACCSHYNTKLA 368
V WGA++G S+ + + A
Sbjct: 237 -DAVAWGAMVGGYASNGHPREA 257
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/443 (23%), Positives = 180/443 (40%), Gaps = 95/443 (21%)
Query: 10 LPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYLFTYNTMI-- 56
LP RKIHA++++ + + + LI+ + VF + R + ++N MI
Sbjct: 223 LPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGC 282
Query: 57 ---NGGVR---------------------------CLCVGNIKMALHLHGLVKKFYFVSD 86
NG C V + +H + + S+
Sbjct: 283 YVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSE 342
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI------------IRLLIMFQK 134
++A + ++M+ KCG+++ A F M N W I + +F +
Sbjct: 343 VAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLEW 193
+ RD +SWN MI+ ++G + F E+ G ++ + A AS+ L
Sbjct: 403 LGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
LH+++ E +ES++ + L+ MYA GS ++A+
Sbjct: 463 VKALHAQISESE----------------------LESNVVVTNTLINMYARCGSLEEAER 500
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F + ++SW +++AFSQ G + F + S+L C+H G
Sbjct: 501 LFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGS 560
Query: 301 VTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ +G YFT MA+ +F MVDLLG SG L +AK+L++ MP +P V W L
Sbjct: 561 LEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFL 620
Query: 357 GACCSHYNTKLAELVMRNLLQLD 379
AC H +L E + +LD
Sbjct: 621 TACRIHGKLELGEAAAERVYELD 643
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 61/311 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G++ LH ++ F D + + I M+ KC ++ A S F M W
Sbjct: 17 CSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM------DW 70
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ +R++VSWN MI+ ++G E L + + G G + + +
Sbjct: 71 R--------------QRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSV 116
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A +S L G +H+RV + +G++S + ALVTM
Sbjct: 117 LGACSS---LAQGREIHNRVFY----------------------SGLDSFQSLANALVTM 151
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFV 289
YA GS A F+ + R+ SW +I A SQ+G F ++
Sbjct: 152 YARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYI 211
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLG---EAKKLIDEMPSK 346
+++SG S + +G+ + + V L+ + G G EA+++ D+M K
Sbjct: 212 NVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMK-K 270
Query: 347 PTCVIWGALLG 357
V W ++G
Sbjct: 271 RDMVSWNVMIG 281
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 114/440 (25%), Positives = 178/440 (40%), Gaps = 106/440 (24%)
Query: 1 MKACGSLKSLPIARKIHAQL----------ISTCLISSIFL-QLIDDDYRVFCDIGPRYL 49
+ A LK+L I R IH ++T ++ + F + VF + R +
Sbjct: 250 LPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNV 309
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++NTMI+G GV C +G+++ ++H L
Sbjct: 310 VSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRL 369
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ + D S+ S I M+ KC VD A S +F +
Sbjct: 370 LDEKKIGFDVSVMNSLISMYSKCKRVDIAAS----------------------VFGNLKH 407
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+ +V+WN MI ++G E L F E+ +H S + +A A + +
Sbjct: 408 KTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWI 467
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H + +VFV + LID + KCG +IQ + L F+L
Sbjct: 468 HGLAIRTLMDKNVFVCTALIDTHAKCG------AIQTARKL----------------FDL 505
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M R++I+W +I + G + F F+S+++ CSHSG V +G
Sbjct: 506 MQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEG 565
Query: 305 KHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
+YF +M K Y ++ MVDLLG +G L +A K I +MP KP + GA+LGAC
Sbjct: 566 MYYFESM-KENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGAC 624
Query: 360 CSHYNTKLAELVMRNLLQLD 379
H N +L E L LD
Sbjct: 625 RIHKNVELGEKTADELFDLD 644
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 39 RVFCD-IGPR-YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
R+ CD + P Y FTY ++G +++ +HG+V F S+ + +++
Sbjct: 132 RMRCDEVMPVVYDFTYLLQLSGENL-----DLRRGREIHGMVITNGFQSNLFAMTAVVNL 186
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ KC ++ A MF++MP+RDLVSWNT+++ ++GF
Sbjct: 187 YAKCRQIEDAYK----------------------MFERMPQRDLVSWNTVVAGYAQNGFA 224
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
+ +++ G S+ + A A + L G +H V V + +
Sbjct: 225 RRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAM 284
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+D Y KC GS + A L F+ MS RN++SW +I ++Q
Sbjct: 285 LDTYFKC----------------------GSVRSARLVFKGMSSRNVVSWNTMIDGYAQN 322
Query: 277 GVLEKPRFFFFFVSLLS 293
G E F F+ +L
Sbjct: 323 G--ESEEAFATFLKMLD 337
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 62/332 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVS-DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
V +++ +HGL + V D I S +DM+ KC D A+
Sbjct: 217 VEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQK--------------- 261
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+F +MP R++V+W +I+ + + + F E+ + ++ S
Sbjct: 262 -------VFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A V L G +H ++ ++ G+ LID+Y+KCGC
Sbjct: 315 ACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGC------------------ 356
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVS 290
++A L FE + +N+ +W +I+ F+ G F+ F++
Sbjct: 357 ----LEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMA 412
Query: 291 LLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LS C+H G V +G+ F +M +F ++ CMVDL G GLL EAK LI+ MP +
Sbjct: 413 VLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPME 472
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
PT V+WGAL G+C H + +L + +++L
Sbjct: 473 PTNVVWGALFGSCLLHKDYELGKYAASRVIKL 504
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 114/307 (37%), Gaps = 62/307 (20%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
H + KF SD + S I + G D+A +F
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASR----------------------LF 161
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++D+V+W MI R+G E + F+E+ G + M + A V D+
Sbjct: 162 DGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVR 221
Query: 193 WGPHLHSRVVHM-EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
+G +H + DVF+GS L+DMY KC C A
Sbjct: 222 FGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSC----------------------YDDA 259
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHS 298
F+ M RN+++W LI+ + Q+ +K F S+LS C+H
Sbjct: 260 QKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHV 319
Query: 299 GPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G + +G+ M K + T ++DL G L EA + + + K W A+
Sbjct: 320 GALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK-NVYTWTAM 378
Query: 356 LGACCSH 362
+ +H
Sbjct: 379 INGFAAH 385
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/271 (18%), Positives = 102/271 (37%), Gaps = 71/271 (26%)
Query: 1 MKACGSLKSLPIARKIHAQLIST------CLISSIFLQLI------DDDYRVFCDIGPRY 48
+KA G ++ + R +H + T I S + + DD +VF ++ R
Sbjct: 211 LKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRN 270
Query: 49 LFTYNTMINGGVRCLC--------------------------------VGNIKMALHLHG 76
+ T+ +I G V+ C VG + +H
Sbjct: 271 VVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHC 330
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
+ K + + + ID++VKCG ++ A +++F+++
Sbjct: 331 YMIKNSIEINTTAGTTLIDLYVKCGCLEEA----------------------ILVFERLH 368
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E+++ +W MI+ HG+ + F + + + + + SA A +E G
Sbjct: 369 EKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRR 428
Query: 197 LHSRV---VHMEPSLDVFVGSGLIDMYLKCG 224
L + +MEP D + + ++D++ + G
Sbjct: 429 LFLSMKGRFNMEPKADHY--ACMVDLFGRKG 457
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 168/380 (44%), Gaps = 69/380 (18%)
Query: 49 LFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
L +N M++ GVR C + NI HG V + F S ++I + IDM
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI----------MFQKMPERDLVSWNTM 146
++KC D A F RM N ++ W I+ + F+ MPE+++VSWNT+
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWN-SIVAGYVENGEVDAAWETFETMPEKNIVSWNTI 440
Query: 147 ISILTRHGFGFETLCTFIELWN----HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
IS L + E + F + + + G++ M A+A ++ +W
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKW--------- 491
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+Y NGI+ +++G LV M++ G + A F ++ R+
Sbjct: 492 ----------------IYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRD 535
Query: 263 MISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFT 309
+ +W I A + AG E+ F FV L+ CSH G V +GK F
Sbjct: 536 VSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFY 595
Query: 310 AMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
+M K ++ CMVDLLG +GLL EA +LI++MP +P VIW +LL AC N
Sbjct: 596 SMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNV 655
Query: 366 KLAELVMRNLLQLDVKVFGS 385
++A + L + GS
Sbjct: 656 EMAAYAAEKIQVLAPERTGS 675
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/352 (18%), Positives = 125/352 (35%), Gaps = 75/352 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+ AC ++ +IH ++ +F+Q +D +VF ++ R +
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNV 200
Query: 50 FTYNTMINGGVR---------------------------------CLCVGNIKMALHLHG 76
++ +MI G R C + +++ ++
Sbjct: 201 VSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYA 260
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
++ ++ + + +DM++KC A+D A+ +F +
Sbjct: 261 FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKR----------------------LFDEYG 298
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+L N M S R G E L F + + G + +A S+ + + ++ WG
Sbjct: 299 ASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKS 358
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALVTMYAEGGS 247
H V+ + + LIDMY+KC ++ ++V Y E G
Sbjct: 359 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGE 418
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299
A FE M +N++SW +IS Q + E+ F + G + G
Sbjct: 419 VDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 22/145 (15%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
+N++I G E + F+ + N G + SA A G +H +V
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
M + D+FV + L+ Y +CG E S +K F+ MS RN
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECG-------------------ELDSARK---VFDEMSERN 199
Query: 263 MISWMVLISAFSQAGVLEKPRFFFF 287
++SW +I +++ + FF
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFF 224
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 128/271 (47%), Gaps = 41/271 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M ERDLV+WN +I++ + GF + L +F E+ G S+ +A SA +
Sbjct: 192 LFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGC 251
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G ++Y GI+S+I + A + M A+ G K
Sbjct: 252 LETGE----------------------EIYEFAREEGIDSNIIVHNARLDMCAKCGDMDK 289
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A F+ M +RN+ISW +I ++ G EK F F+++LS CSH
Sbjct: 290 AMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSH 349
Query: 298 SGPVTKGKHYFTAMAKFT------YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
+G V +G YF MA+ ++ CMVDLLG SG L EA I MP + I
Sbjct: 350 TGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGI 409
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
WGALLGAC H N KL + V L +L ++
Sbjct: 410 WGALLGACAIHQNIKLGQHVADLLFELAPEI 440
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 112/453 (24%), Positives = 179/453 (39%), Gaps = 101/453 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLI--STCLISSIFLQLIDDDY-----RVF-----CDIGPRY 48
M+A SLK + ARK+ ++ + +I+ + +++ + +VF C + P +
Sbjct: 82 MRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDH 141
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
+T+ ++ C C GNI + +HG K S + + M+ KCG + A
Sbjct: 142 -YTFPCVLKA---CSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 197
Query: 109 AFLRMLNPSLFCWKF--------------------------------------------- 123
M + W
Sbjct: 198 VLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTT 257
Query: 124 -GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
++ + MF KM ++ LVSWN MI + ++ E + + + GF ++ +
Sbjct: 258 ENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVL 317
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
A L G +H + + ++ + + LIDMY KCGC
Sbjct: 318 PACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGC----------------- 360
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
+A FE M R+++SW +ISA+ +G F FV
Sbjct: 361 -----LDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFV 415
Query: 290 SLLSGCSHSGPVTKGKHYFTAMA---KFTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+ L+ CSH+G + +G+ F M K T + CMVDLLG +G + EA K I EMP
Sbjct: 416 TTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPM 475
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+P +WGALLGAC H NT + L L QL
Sbjct: 476 EPNERVWGALLGACRVHSNTDIGLLAADKLFQL 508
>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 846
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 143/314 (45%), Gaps = 61/314 (19%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
++ + DM+ KCG +D A ++F F++M E D + WN+MI
Sbjct: 484 NVGSAITDMYAKCGRLDLA--------------YEF--------FRRMSETDSICWNSMI 521
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
S +++G + F ++ G S+ ++A S+ A++ L +G +H V+ S
Sbjct: 522 SSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFS 581
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
D FV S LIDMY KC G A F LM+ +N +SW
Sbjct: 582 SDTFVASALIDMYSKC----------------------GKLALARCVFNLMAGKNEVSWN 619
Query: 268 VLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+I+A+ G + F F+ ++S C H+G V +G HYF M +
Sbjct: 620 SIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTRE 679
Query: 315 ----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
++ CMVDL G +G L EA I MP P +WG LLGAC H N +LA+L
Sbjct: 680 YGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKL 739
Query: 371 VMRNLLQLDVKVFG 384
R+LL+LD K G
Sbjct: 740 ASRHLLELDPKNSG 753
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 101/267 (37%), Gaps = 65/267 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLIS-----TCLISSIFLQLIDDD------YRVFCDIGPRYL 49
+KACG L ++P+ +H S + S ++L D+ RVF ++ R
Sbjct: 152 IKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDT 211
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
+N M++G V+ C G + +HGL
Sbjct: 212 ILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGL 271
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V F D +A + + M+ KCG + A +F MP+
Sbjct: 272 VIGSGFEFDPQVANTLVAMYSKCGNLFDARK----------------------LFNTMPQ 309
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D V+WN +I+ ++GF E F + + G S+ +A+ + L +
Sbjct: 310 TDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEV 369
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCG 224
HS +V DV++ S LID+Y K G
Sbjct: 370 HSYIVRHRVPFDVYLKSALIDIYFKGG 396
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 94/244 (38%), Gaps = 62/244 (25%)
Query: 52 YNTMINGGVRCLCV------------GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+N MI+ GV+ V G+++ +H + + D + + ID++ K
Sbjct: 335 FNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFK 394
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
G V+ A +FQ+ D+ MIS HG +
Sbjct: 395 GGDVEMARK----------------------IFQQNTLVDVAVCTAMISGYVLHGLNIDA 432
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ TF L G +S+ A+ A A++ L+ G LH ++ + V VGS + DM
Sbjct: 433 INTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDM 492
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL---MSRRNMISWMVLISAFSQA 276
Y KCG + DLA+E MS + I W +IS+FSQ
Sbjct: 493 YAKCG-------------------------RLDLAYEFFRRMSETDSICWNSMISSFSQN 527
Query: 277 GVLE 280
G E
Sbjct: 528 GKPE 531
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 22/156 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++P+RD + WN M+ + G + TF + ++S+ Y S A+
Sbjct: 202 VFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGK 261
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H V +GSG E Q+ LV MY++ G+
Sbjct: 262 FCLGTQVHGLV----------IGSGF------------EFDPQVANTLVAMYSKCGNLFD 299
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
A F M + + ++W LI+ + Q G ++ F
Sbjct: 300 ARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLF 335
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 17/171 (9%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G + +G AL+ +YA+ G A F+ + +R+ I W V++ + ++G F
Sbjct: 175 GFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTF 234
Query: 287 -------------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLS 330
+ +LS C+ G G H + F + +V +
Sbjct: 235 CGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKC 294
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
G L +A+KL + MP T V W L+ + T A + ++ VK
Sbjct: 295 GNLFDARKLFNTMPQTDT-VTWNGLIAGYVQNGFTDEAAPLFNAMISAGVK 344
>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 690
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 148/346 (42%), Gaps = 64/346 (18%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T+ TMI +G +++ +H K D ++ + IDM+ KCG+++ A
Sbjct: 220 TFTTMIRASA---GLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAH--- 273
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+F +MPE+ V WN++I+ HG+ E L + E+ + G
Sbjct: 274 -------------------CVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSG 314
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ + A + LE+ H+ +V G ++
Sbjct: 315 AKIDHFTISIVIRICARLASLEYAKQAHAALVR----------------------RGYDT 352
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---- 286
I ALV Y++ G + A F M R+N+ISW LI+ + G E+ F
Sbjct: 353 DIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQML 412
Query: 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLL 333
F+++LS CS+SG +G F +M++ ++ CMV+LLG GLL
Sbjct: 413 REGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLL 472
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA +LI P KPT +W LL AC H N +L +L NL ++
Sbjct: 473 DEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGME 518
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 101/263 (38%), Gaps = 39/263 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPE+D+ SW TMI G E F+ +W S + T A A +
Sbjct: 174 LFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGL 233
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
++ G +HS + D FV LIDMY KC GS +
Sbjct: 234 VQVGRQIHSCALKRGVGDDTFVSCALIDMYSKC----------------------GSIED 271
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS-------------LLSGCSH 297
A F+ M + + W +I++++ G E+ F++ + ++ C+
Sbjct: 272 AHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICAR 331
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ K A+ + Y V +VD G + +A + + M K + W A
Sbjct: 332 LASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRK-NVISWNA 390
Query: 355 LLGACCSHYNTKLAELVMRNLLQ 377
L+ +H + A + +L+
Sbjct: 391 LIAGYGNHGQGEEAVEMFEQMLR 413
>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 143/323 (44%), Gaps = 60/323 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++++ +H L K + + I M+ KCG V+ F +
Sbjct: 303 CANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTI-------- 354
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+MP+RD+VSW +IS + G G L F+++ G + + +
Sbjct: 355 ------------RMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSL 402
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA ++ ++ G H+ + + +FVG+ LI MY KCG
Sbjct: 403 LSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG----------------- 445
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
Y +G FE M ++I+W ++ +Q G+ ++ F F
Sbjct: 446 YEDGFCV------FEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSF 499
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ +L CSH+G V +G +F +M + ++ CMVDLLG +G L EA+ LI+ MP
Sbjct: 500 LGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMP 559
Query: 345 SKPTCVIWGALLGACCSHYNTKL 367
KP VIW ALLGAC H N +L
Sbjct: 560 VKPDSVIWEALLGACRIHRNNEL 582
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 37/248 (14%)
Query: 131 MFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
+++++PE+ + SW MI+ ++ E L IEL G S + +A SA A++
Sbjct: 248 LYERVPEQTNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIG 307
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D+E G +HS + + +V +GLI MY KCG +E + + +
Sbjct: 308 DVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCG--NVEDGSHVFRTI----------- 354
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCS 296
M +R+++SW +ISA+ QAG E F SLLS C
Sbjct: 355 -------RMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACG 407
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKK--LIDEMPSKPTCVIWGA 354
+ G + G+ + + K + + L+ + G + +EMP + W A
Sbjct: 408 NLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFCVFEEMPEH-DLITWNA 466
Query: 355 LLGACCSH 362
+L C +
Sbjct: 467 VLVGCAQN 474
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCS 296
G ++A F M +R+++SW +I+ +SQ G +++ R F + LL+G +
Sbjct: 53 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYA 112
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G + + + F +M + + M+ +G L A+KL DEMP K W +++
Sbjct: 113 KEGRIEEAREVFESMTERNVVSWNA-MISGYVQNGDLKNARKLFDEMPEK-NVASWNSVV 170
Query: 357 GACCSHYNTKLA 368
C Y A
Sbjct: 171 TGYCHCYRMSEA 182
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 25/240 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M +RD+VSWN+MI+ +++G E F ++L T ++ + +
Sbjct: 61 VFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILL-TGYAKEGRIEE 119
Query: 191 LE--WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+ VV + +V +G + K E ++ ++VT Y
Sbjct: 120 AREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRM 179
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYF 308
+A F+ M RN +SWMV+IS + H + F
Sbjct: 180 SEARELFDQMPERNSVSWMVMISGY----------------------VHISDYWEAWDVF 217
Query: 309 TAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
M + + M+ G L +A +L + +P + W A++ + ++ A
Sbjct: 218 VKMCRTRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESREA 277
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 179/417 (42%), Gaps = 76/417 (18%)
Query: 8 KSLPIARKIHAQLISTCLISSIFL-------QLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
KSL A K+ ++ ++S L L D+ +R+FC + ++ GG+
Sbjct: 192 KSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM----------VVVGGM 241
Query: 61 RCLCV------------GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
R V G + + LH V + ++ + +DM KCG V YA
Sbjct: 242 RPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYARE 301
Query: 109 AFLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
F M ++ W K G + +F+ MP R++VSW+ MI+ ++ E
Sbjct: 302 VFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEA 361
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ F E+ G + SA A + L+ G ++ +
Sbjct: 362 VWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIV---------------- 405
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
N I ++ +G AL+ M+A+ G +A F+ M+ RN++SW +I A + G
Sbjct: 406 -----SNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQS 460
Query: 280 EKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVC 322
E+ R F F+ LL+ CSHSG V++G+ YF M F ++ C
Sbjct: 461 EEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYAC 520
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
M+DLLG GLL EA ++ MP + WGALL AC H N ++ V L++LD
Sbjct: 521 MIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELD 577
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 20/177 (11%)
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
LKCG G S+ +G ALV YA S A F+ M R+++SW L+ +++AG+ +
Sbjct: 169 LKCGFVG--ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLAD 226
Query: 281 KPRFFF--------------FFVSLLSGCSHSGPVTKG---KHYFTAMAKFTYTCYFVCM 323
+ F V+ +S G + G Y T +
Sbjct: 227 EAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNAL 286
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
VD+ G G + A+++ D M K W +++ A + + AE + +++ + +V
Sbjct: 287 VDMFGKCGCVRYAREVFDGMEVK-DVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV 342
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 122/265 (46%), Gaps = 39/265 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
MF K+ + LVSWN MI++ + E + F+++ +H ++ A+ A +
Sbjct: 1251 MFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSA 1310
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H VV ++ + + LIDMY KCGC +
Sbjct: 1311 LLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGC----------------------LEY 1348
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A F+ M R+++SW +ISA+ G F FVS+LS CSH
Sbjct: 1349 AREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSH 1408
Query: 298 SGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G + +G++YF M + +FVCMVDLLG +G + EA I +MP +P +WG
Sbjct: 1409 AGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 1468
Query: 354 ALLGACCSHYNTKLAELVMRNLLQL 378
ALL AC + N + L L QL
Sbjct: 1469 ALLSACRVYSNMIIGLLAADQLFQL 1493
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++P++++V +N MI + + L F + HG Y A + D
Sbjct: 1082 IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 1141
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225
L G +H+ VV + L+VFVG+GLI MY KCGC
Sbjct: 1142 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGC 1176
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 22/91 (24%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
IDM+ KCG ++YA F +M KF RD+VSW +MIS +
Sbjct: 1337 IDMYAKCGCLEYAREVFDQM--------KF--------------RDVVSWTSMISAYGMN 1374
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
G G + + F + + G S+ + + SA
Sbjct: 1375 GKGRDAVSLFSRMQDLGLNPDSIAFVSVLSA 1405
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 167/379 (44%), Gaps = 67/379 (17%)
Query: 49 LFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
L +N M++ GVR C + NI HG V + F S ++I + IDM
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMI 147
++KC D A F RM N ++ W + + F+ MPE+++VSWNT+I
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTII 441
Query: 148 SILTRHGFGFETLCTFIELWN----HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
S L + E + F + + + G++ M A+A ++ +W
Sbjct: 442 SGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKW---------- 491
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
+Y NGI+ +++G LV M++ G + A F ++ R++
Sbjct: 492 ---------------IYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDV 536
Query: 264 ISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTA 310
+W I A + AG E+ F FV L+ CSH G V +GK F +
Sbjct: 537 SAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYS 596
Query: 311 MAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
M K ++ CMVDLLG +GLL EA +LI++MP +P VIW +LL AC N +
Sbjct: 597 MLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVE 656
Query: 367 LAELVMRNLLQLDVKVFGS 385
+A + L + GS
Sbjct: 657 MAAYAAEKIQVLAPERTGS 675
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 40/221 (18%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+ +HGL+ K + D + S + + +CG +D A
Sbjct: 153 GIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARK---------------------- 190
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGFGLSSMLYATAFSARASVY 189
+F +M ER++VSW +MI R F + + F + + +S+ SA A +
Sbjct: 191 VFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLE 250
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE-----------SSIQIGKAL 238
DLE G +++ + + ++ + S L+DMY+K CN I+ S++ + A+
Sbjct: 251 DLETGEKVYAFIRNSGIEVNDLMVSALVDMYMK--CNAIDVAKRLFDEYGASNLDLCNAM 308
Query: 239 VTMYAEGGSTQKADLAFELM----SRRNMISWMVLISAFSQ 275
+ Y G T++A F LM R + IS + IS+ SQ
Sbjct: 309 ASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 31/247 (12%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ ++ ++ ++ + + +DM++KC A+D A+
Sbjct: 246 CAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKR------------- 292
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F + +L N M S R G E L F + + G + +A
Sbjct: 293 ---------LFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSA 343
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSI 232
S+ + + ++ WG H V+ + + LIDMY+KC ++
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
++V Y E G A FE M +N++SW +IS Q + E+ F +
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463
Query: 293 SGCSHSG 299
G + G
Sbjct: 464 EGVNADG 470
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 22/145 (15%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
+N++I G E + F+ + N G + SA A G +H +V
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
M + D+FV + L+ Y +CG E S +K F+ MS RN
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECG-------------------ELDSARK---VFDEMSERN 199
Query: 263 MISWMVLISAFSQAGVLEKPRFFFF 287
++SW +I +++ + FF
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFF 224
>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 736
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 160/355 (45%), Gaps = 65/355 (18%)
Query: 44 IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
I P +L T ++ C + ++ +HGLV K S+ I + +D++ KCG++
Sbjct: 85 IEPNFL----TYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSL 140
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
+ A +F+ E D VS ++ T++GF E + F
Sbjct: 141 EDARR----------------------VFESAVELDEVSMTVILVGFTQNGFEEEAIEFF 178
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
+++ N G + + + A L G +HS V+ + FVG+GLI+MY KC
Sbjct: 179 VKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKC 238
Query: 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKP 282
G ++ SI++ F ++ RN +SW +I+AF++ G
Sbjct: 239 G--ELQESIKV--------------------FNGLTCRNSVSWNSMIAAFARHGDGFRAL 276
Query: 283 RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDL 326
R + F+SLL CSH G V KG + +M K ++ C+VD+
Sbjct: 277 RLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDM 336
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
LG +GLL EAK LI+ + KP +IW ALLGAC +T++ + LL L+ K
Sbjct: 337 LGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTEIGKYAAEQLLLLEPK 391
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS--ARASV 188
+F MP RD VSWNTM+S R+G L T ++++ + + + S ++ +
Sbjct: 14 VFDDMPTRDTVSWNTMVSGFLRNG----DLDTGRQVFDEMLERNVITWTAIISGLSQNEM 69
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVG-----SGLIDMYLKCGCN--------GIESSIQIG 235
Y+ G + R +EP+ ++ SGL L+ G GI+S++ I
Sbjct: 70 YEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGL--QALEKGRQIHGLVWKLGIQSNLCIE 127
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
AL+ +Y++ GS + A FE + +S V++ F+Q G E+ FF
Sbjct: 128 SALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFF 178
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 151/357 (42%), Gaps = 67/357 (18%)
Query: 41 FCDIGPR-YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
C I P Y F + + LC G LH + K + + I ++
Sbjct: 100 LCGISPNSYTFGFVLKACCKLLRLCEGQ-----ELHSQIVKVGLDFETPLVNGLIKLYAA 154
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
CG +DYA +MF +MPE D SW+TM+S ++G E
Sbjct: 155 CGCMDYA----------------------CVMFDEMPEPDSASWSTMVSGYAQNGQAVEA 192
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
L F E+ + A+ + L+ G +HS +M+
Sbjct: 193 LKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHS---YMDK------------- 236
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
G++ + +G ALV MY++ GS A F+ M+ R++ +W +I+ ++ G
Sbjct: 237 ------EGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHG 290
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVC 322
EK F F S+LS CSHSG V KG F M ++ T ++ C
Sbjct: 291 EKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGC 350
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MVDL +G++G A K I MP +P V+W LLGAC +H L E + R +L+LD
Sbjct: 351 MVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLD 407
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 130/336 (38%), Gaps = 69/336 (20%)
Query: 61 RCLCVGNIKMALHLHGL---VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
RC VG++K A+ H + + + F++ + I S++ + G V YA F +P+
Sbjct: 16 RCTRVGDLK-AIQAHMVRANLTQDTFLTSKLIESSAVTL---SGHVAYAHRIFSCTHHPN 71
Query: 118 LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF-ETLCTFIELWNHGF--GLS 174
LF WNT+I G+ ++ T I L+ F G+S
Sbjct: 72 LFM----------------------WNTIIR-----GYSISDSPITAIALYRDMFLCGIS 104
Query: 175 SMLYATAFSARA--SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---- 228
Y F +A + L G LHS++V + + + +GLI +Y CGC
Sbjct: 105 PNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVM 164
Query: 229 -----ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF----SQAGVL 279
E +V+ YA+ G +A F M N+ S +++ G L
Sbjct: 165 FDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGAL 224
Query: 280 EKPRFFFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDL 326
+ ++ ++ +L+ S G + F MA+ T + M+
Sbjct: 225 DLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWST-MIAG 283
Query: 327 LGLSGLLGEAKKLIDEMPSK---PTCVIWGALLGAC 359
+ G +A +L D M P CV + ++L AC
Sbjct: 284 YAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSAC 319
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 169/377 (44%), Gaps = 55/377 (14%)
Query: 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLC--VGNIKMALHLHGLVKKFYFVSDESIA 90
L+D+ +++F ++ + + MI + C GN++ ++ + + D +
Sbjct: 192 LVDEAFKLFEEMKDSNVMP-DEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLL 250
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLF-----------CWKFGIIRLLIMFQKMPERD 139
+ + M+ G +D A F +M +LF C + + ++F + ++D
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQ--VIFDQTEKKD 308
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
LV W TMIS + E L F E+ G + + SA A++ L+ +HS
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHS 368
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+H+ NG+ES + I AL+ MYA+ G FE M
Sbjct: 369 -CIHV---------------------NGLESELSINNALINMYAKCGGLDATRDVFEKMP 406
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
RRN++SW +I+A S G F FV +L GCSHSG V +GK
Sbjct: 407 RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKK 466
Query: 307 YFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
F +M ++ T ++ CMVDL G + LL EA ++I+ MP VIWG+L+ AC H
Sbjct: 467 IFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIH 526
Query: 363 YNTKLAELVMRNLLQLD 379
+L + + +L+L+
Sbjct: 527 GELELGKFAAKRILELE 543
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 134/325 (41%), Gaps = 66/325 (20%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131
+ LHG+ K + D + +DM+ CG ++YA + +
Sbjct: 131 MELHGVAFKIATLCDPFVETGFMDMYASCGRINYARN----------------------V 168
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F +M RD+V+WNTMI R G E F E+ + M+ SA ++
Sbjct: 169 FDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNM 228
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE---------SSIQIGKALVTMY 242
+ ++ ++ + +D + + L+ MY GC + ++ + A+V+ Y
Sbjct: 229 RYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGY 288
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLE-------KPRFFFFF 288
++ G A + F+ +++++ W +ISA+ ++ V E KP F
Sbjct: 289 SKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMF 348
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV-----------CMVDLLGLSGLLGEAK 337
S++S C++ G + K AK+ ++C V ++++ G L +
Sbjct: 349 -SVISACANLGILDK--------AKWVHSCIHVNGLESELSINNALINMYAKCGGLDATR 399
Query: 338 KLIDEMPSKPTCVIWGALLGACCSH 362
+ ++MP + V W +++ A H
Sbjct: 400 DVFEKMPRR-NVVSWSSMINALSMH 423
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 179/417 (42%), Gaps = 76/417 (18%)
Query: 8 KSLPIARKIHAQLISTCLISSIFL-------QLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
KSL A K+ ++ ++S L L D+ +R+FC + ++ GG+
Sbjct: 192 KSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM----------VVVGGM 241
Query: 61 RCLCV------------GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
R V G + + LH V + ++ + +DM KCG V YA
Sbjct: 242 RPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYARE 301
Query: 109 AFLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
F M ++ W K G + +F+ MP R++VSW+ MI+ ++ E
Sbjct: 302 VFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEA 361
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
+ F E+ G + SA A + L+ G ++ +
Sbjct: 362 VWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIV---------------- 405
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
N I ++ +G AL+ M+A+ G +A F+ M+ RN++SW +I A + G
Sbjct: 406 -----SNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQS 460
Query: 280 EKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVC 322
E+ R F F+ LL+ CSHSG V++G+ YF M F ++ C
Sbjct: 461 EEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYAC 520
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
M+DLLG GLL EA ++ MP + WGALL AC H N ++ V L++LD
Sbjct: 521 MIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELD 577
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 20/177 (11%)
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
LKCG G S+ +G ALV YA S A F+ M R+++SW L+ +++AG+ +
Sbjct: 169 LKCGFVG--ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLAD 226
Query: 281 KPRFFF--------------FFVSLLSGCSHSGPVTKG---KHYFTAMAKFTYTCYFVCM 323
+ F V+ +S G + G Y T +
Sbjct: 227 EAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNAL 286
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
VD+ G G + A+++ D M K W +++ A + + AE + +++ + +V
Sbjct: 287 VDMFGKCGCVRYAREVFDGMEVK-DVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV 342
>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 857
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 149/330 (45%), Gaps = 62/330 (18%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+K+ LHG + K F + +I + IDM+ KCG ++ A
Sbjct: 457 LKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYE------------------- 497
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F+++ +RD+VSWN+MI+ + + F ++ G + + A SA A+
Sbjct: 498 ---IFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACAN 554
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ +G +H ++ + DV+ S LIDMY KCG +++++ +
Sbjct: 555 LPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCG--NLKAAMNV------------- 599
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLS 293
F+ M +N++SW +I+A G L+ F F+ ++S
Sbjct: 600 -------FKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIIS 652
Query: 294 GCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
C H G V +G +F +M + ++ C+VDL G +G L EA + + MP P
Sbjct: 653 SCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDA 712
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WG LLGAC H N +LAE+ L+ LD
Sbjct: 713 GVWGTLLGACRLHKNVELAEVASSKLMDLD 742
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 126/322 (39%), Gaps = 57/322 (17%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
I + + LHGLV + SI S + M+ KCG D A
Sbjct: 255 IDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASK------------------- 295
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F+ M D V+WN MIS + G E+L F E+ + G ++ +++ + +
Sbjct: 296 ---LFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSK 352
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----------GCNGIESSIQIGK 236
+LE+ +H ++ SLD+F+ S LID Y KC CN ++ + +
Sbjct: 353 FENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVD--VVVFT 410
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLS--G 294
A+++ Y G + M W+V + L VS+L G
Sbjct: 411 AMISGYLHNGL---------YIDSLEMFRWLVKVKISPNEITL---------VSILPVIG 452
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ + + H F F C C ++D+ G + A ++ + + SK V W
Sbjct: 453 ILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERL-SKRDIVSWN 511
Query: 354 ALLGACCSHYNTKLAELVMRNL 375
+++ C N A + R +
Sbjct: 512 SMITRCAQSDNPSAAIDIFRQM 533
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 44/226 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ + N K L V +E +A S I +++ G +D F R+L
Sbjct: 148 CVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVL------- 200
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++D V WN M++ + G + F + +++ +
Sbjct: 201 ---------------QKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCV 245
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
S AS ++ G LH VV + + + L+ MY KC
Sbjct: 246 LSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKC------------------ 287
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
G A F +MSR + ++W +IS + Q+G++E+ FF+
Sbjct: 288 ----GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFY 329
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 157/349 (44%), Gaps = 56/349 (16%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT +T++ C +IK + +HG K F +D + S IDM+ C +DY+
Sbjct: 171 FTLSTVLPIFAEC---ADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYS--- 224
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ +F + D V WN+M++ ++G E L F +
Sbjct: 225 -------------------MKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQA 265
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---- 225
G + +++ A ++ L G LH+ ++ + ++F+ S LIDMY KCG
Sbjct: 266 GVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIA 325
Query: 226 ----NGIES-SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
NGI+S I A++ YA G T +A + FE M N+
Sbjct: 326 RRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNV----------------- 368
Query: 281 KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTC-YFVCMVDLLGLSGLLGEA 336
KP F +++L+ CSH+G V G YF +M+ F + + + D LG +G L EA
Sbjct: 369 KPNHITF-LAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEA 427
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
I EM KPT +W LL AC H NT LAE V + + +L+ K GS
Sbjct: 428 YNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGS 476
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 113/265 (42%), Gaps = 35/265 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M ERD VSWNT+I H E L E+W GF + +T A D
Sbjct: 126 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 185
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-----------GKALV 239
++ G +H + DVFVGS LIDMY C ++ S+++ +++
Sbjct: 186 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMY--ANCTQMDYSMKVFDSFSDCDAVLWNSML 243
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299
YA+ GS ++A F R M+ QAGV P F SL+ +
Sbjct: 244 AGYAQNGSVEEALGIF-----RRML----------QAGVRPVP---VTFSSLIPAFGNLS 285
Query: 300 PVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ GK H + A+F + ++D+ G + A+++ + + S P V W A++
Sbjct: 286 LLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQS-PDIVSWTAMI 344
Query: 357 GACCSHYNTKLAELVMRNLLQLDVK 381
H T A ++ + +VK
Sbjct: 345 MGYALHGPTTEAFVLFERMELGNVK 369
>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
Length = 591
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 180/447 (40%), Gaps = 108/447 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ------------LIDDDYRVFCDIGPRY 48
+KAC +K L R +H I L I++ +DD VF I +
Sbjct: 100 LKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKN 159
Query: 49 LFTYNTMING---------GVR-----------------------CLCVGNIKMALHLHG 76
++ T+I G G+R C +G+ LH
Sbjct: 160 EVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHA 219
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
V K F S+ + S +DM+ +C A F +M
Sbjct: 220 AVTKHGFESNLPVMNSILDMYCRCSCFSEANR----------------------YFYEMN 257
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+RDL++WNT+I+ R E+L F + + GF + + + +A A++ L G
Sbjct: 258 QRDLITWNTLIAGYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQ 316
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H R++ G++ ++ + AL+ MY++ G+ + F
Sbjct: 317 IHGRIIR----------------------RGLDGNLALSNALIDMYSKCGNIADSHQVFG 354
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303
MSRR+++SW ++ + G E+ F F+++LS CSH+G V +
Sbjct: 355 GMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDE 414
Query: 304 GKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G YF M Y + C+VDLLG +G + EA +LI+ MP KP +WG LGA
Sbjct: 415 GLRYFKLMVG-DYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGA 473
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C +H L +L +L L + G+
Sbjct: 474 CKAHTFPNLGKLAAHRILDLRPHMAGT 500
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 178/401 (44%), Gaps = 85/401 (21%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCV---------------------------- 65
++D +VF ++ R + +N MING + C+
Sbjct: 161 MEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSV 220
Query: 66 ----GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
G++ +HG+V K + S S++ + IDM+ KC + A
Sbjct: 221 FASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDA--------------- 265
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
LI+F+ + E+D+ SWN++IS+ + G TL F ++ G + T
Sbjct: 266 -------LIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTV 318
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + + L +H R +H G +I+ K NG ++ + A++ M
Sbjct: 319 LPACSHLAAL-----MHGREIH---------GYMIINGLGKDDENGAVDNLLVSNAVMDM 364
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFF 288
YA+ GS A F+ MS++++ SW ++I + G LE F
Sbjct: 365 YAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTL 424
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
V +LS C+H+G V+ G+ + M ++ C++D+LG +G L +A +++ +MP
Sbjct: 425 VGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMP 484
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ V+W ALLGAC H N +LAE+ R +LQL+ + GS
Sbjct: 485 IQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGS 525
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/318 (20%), Positives = 119/318 (37%), Gaps = 66/318 (20%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
N+ LH L+ + F S I+M+ KCG + A
Sbjct: 26 NLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEA-------------------- 65
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+L+ + ER++ ++N +IS +G + + ++ G +
Sbjct: 66 -ILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCC 124
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
V +++ +H ++ M LDVFVGS L++ YLK G
Sbjct: 125 EVMEVK---KIHGCLLKMGLELDVFVGSALVNTYLK----------------------NG 159
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLS 293
S + A F +S R+++ W +I+ +++ G L++ F F +LS
Sbjct: 160 SMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILS 219
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
+ G + GK + K Y ++D+ G +G+A +I EM ++
Sbjct: 220 VFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDA-LIIFEMINEKDIF 278
Query: 351 IWGALLGA---CCSHYNT 365
W +++ C H T
Sbjct: 279 SWNSIISVHEQCGDHDGT 296
>gi|302759985|ref|XP_002963415.1| hypothetical protein SELMODRAFT_61513 [Selaginella moellendorffii]
gi|300168683|gb|EFJ35286.1| hypothetical protein SELMODRAFT_61513 [Selaginella moellendorffii]
Length = 500
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/428 (24%), Positives = 179/428 (41%), Gaps = 107/428 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+ AC SLK L R +HA L+ + + FL++ + + R+F + +
Sbjct: 92 ITACCSLKDLARGRAVHAGLLVSGIQPDDFLRVALLNMYAKLGSLGEATRIFHSMPTDNV 151
Query: 50 FTYNTMIN--------------------GGVR------------CLCVGNIKMALHLHGL 77
+N MI GG R C+ + +H
Sbjct: 152 VAWNVMIAAFSQSDRPSLALEFYWKMLAGGTRPDFCTLISTLSAVSCLRLLSHGRAIHDS 211
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
++ + SD + + +DM+ KCG++D A ++F KMPE
Sbjct: 212 IQAHGYCSDVILDTALVDMYGKCGSLDDAR----------------------MVFDKMPE 249
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+V+WN MI+ ++HG G + + E+ GF + +A + DL G +
Sbjct: 250 RDIVTWNAMIAAYSQHGQGDKAFELYAEMEPQGFKPELVTLVNLLTASCCLGDLSRGKAM 309
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE- 256
HSR++ + L + + +++MY KC GS +A LAF+
Sbjct: 310 HSRIIDDKLELTLVAENAIVNMYAKC----------------------GSLAQAKLAFDG 347
Query: 257 LMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVT 302
++ R++ISW +I+ ++ G E P F LL CSH G +
Sbjct: 348 MIHPRDVISWNAIIAGNAENGGTETSLQLAKDMVLDGVAPDATTFTCVLLC-CSHGGRLE 406
Query: 303 KGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+G+ YF +M + ++ ++DLLG +G L EA++L+ MP +P A LGA
Sbjct: 407 QGRSYFLSMVSDFQLSPSSAHYQSLIDLLGRAGRLEEAEELMSVMPYQPGVAGVRAYLGA 466
Query: 359 CCSHYNTK 366
C +H++ +
Sbjct: 467 CRTHFDEE 474
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 103/253 (40%), Gaps = 45/253 (17%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F + ++ S+N +IS R+G E L F + G YA +A S+
Sbjct: 39 LAVFSTIARKNTYSYNILISAAARNGLYREALNAFERMKREGIPRDKFTYADVITACCSL 98
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
DL G +H+ ++ D F+ L++MY K G G + I
Sbjct: 99 KDLARGRAVHAGLLVSGIQPDDFLRVALLNMYAKLGSLGEATRI---------------- 142
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF----------------VSLL 292
F M N+++W V+I+AFSQ+ ++P F +S L
Sbjct: 143 ------FHSMPTDNVVAWNVMIAAFSQS---DRPSLALEFYWKMLAGGTRPDFCTLISTL 193
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
S S ++ G+ ++ Y + +VD+ G G L +A+ + D+MP +
Sbjct: 194 SAVSCLRLLSHGRAIHDSIQAHGYCSDVILDTALVDMYGKCGSLDDARMVFDKMPER-DI 252
Query: 350 VIWGALLGACCSH 362
V W A++ A H
Sbjct: 253 VTWNAMIAAYSQH 265
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/373 (19%), Positives = 145/373 (38%), Gaps = 63/373 (16%)
Query: 20 LISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVK 79
LIS + ++ + ++ R+ + PR FTY +I C + ++ +H +
Sbjct: 56 LISAAARNGLYREALNAFERMKREGIPRDKFTYADVITA---CCSLKDLARGRAVHAGLL 112
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
D+ + + ++M+ K G++ A +F MP +
Sbjct: 113 VSGIQPDDFLRVALLNMYAKLGSLGEATR----------------------IFHSMPTDN 150
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+V+WN MI+ ++ L + ++ G + SA + + L G +H
Sbjct: 151 VVAWNVMIAAFSQSDRPSLALEFYWKMLAGGTRPDFCTLISTLSAVSCLRLLSHGRAIHD 210
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+ DV + + L+DMY KCG S A + F+ M
Sbjct: 211 SIQAHGYCSDVILDTALVDMYGKCG----------------------SLDDARMVFDKMP 248
Query: 260 RRNMISWMVLISAFSQAGVLEK---------PRFF----FFFVSLLSGCSHSGPVTKGKH 306
R++++W +I+A+SQ G +K P+ F V+LL+ G +++GK
Sbjct: 249 ERDIVTWNAMIAAYSQHGQGDKAFELYAEMEPQGFKPELVTLVNLLTASCCLGDLSRGKA 308
Query: 307 YFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
+ + V +V++ G L +AK D M + W A++ +
Sbjct: 309 MHSRIIDDKLELTLVAENAIVNMYAKCGSLAQAKLAFDGMIHPRDVISWNAIIAGNAENG 368
Query: 364 NTKLAELVMRNLL 376
T+ + + ++++
Sbjct: 369 GTETSLQLAKDMV 381
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK-------------P 282
ALV MY + S ++A F ++R+N S+ +LISA ++ G+ + P
Sbjct: 23 NALVQMYGKCRSMKEALAVFSTIARKNTYSYNILISAAARNGLYREALNAFERMKREGIP 82
Query: 283 RFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKL 339
R F + +++ C + +G+ H ++ + V ++++ G LGEA ++
Sbjct: 83 RDKFTYADVITACCSLKDLARGRAVHAGLLVSGIQPDDFLRVALLNMYAKLGSLGEATRI 142
Query: 340 IDEMPSKPTCVIWGALLGA 358
MP+ V W ++ A
Sbjct: 143 FHSMPTD-NVVAWNVMIAA 160
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 162/379 (42%), Gaps = 56/379 (14%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+ D +VF ++ R + ++NT + VR G + A + + + VS ++
Sbjct: 255 LSDAKKVFDEMTTRDVVSWNTAMAAMVR---KGEVDAARSMFDEMPEKDTVSWNTM---- 307
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWN 144
+D + K G + A F RM ++ W K G + + ++F KMP ++LV+W
Sbjct: 308 LDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWT 367
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
M+S + G E F E+ L + + +A A L G +H V
Sbjct: 368 IMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQR 427
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL-MSRRNM 263
+ V + L+DM+ KCGC +AD F+ + ++
Sbjct: 428 KLGRSTLVCNALMDMFCKCGC----------------------VNRADYIFDTEIVEKDS 465
Query: 264 ISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTA 310
+SW ++I F+ G EK F +++LS C+H G V +G+ +F
Sbjct: 466 VSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFAN 525
Query: 311 MAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
M ++ CMVDLLG GL+ EA +I MP +P VIWG+LL AC H N +
Sbjct: 526 METDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKNVE 585
Query: 367 LAELVMRNLLQLDVKVFGS 385
AEL L L G+
Sbjct: 586 YAELAANELSNLQPSNAGN 604
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 56/196 (28%)
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM---------------- 241
H+ V + D FVG+ LID Y K +G+ + ++ + T
Sbjct: 227 HTHVFKLGSVEDTFVGNALIDAYSK--NDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKG 284
Query: 242 --------------------------YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
YA+ G ++A F+ M RN++SW ++SA+ +
Sbjct: 285 EVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCK 344
Query: 276 AGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDL 326
G +E R F + ++S C+ G V + FT M + V +V +
Sbjct: 345 KGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSI 404
Query: 327 LGL---SGLLGEAKKL 339
L SG L K++
Sbjct: 405 LAACAESGCLALGKRI 420
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+G AL+ Y++ A F+ M+ R+++SW ++A + G ++ R F
Sbjct: 241 VGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKD 300
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ ++L G + +G + F M + +V G + A+ + D+MP
Sbjct: 301 TVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWST-VVSAYCKKGDMEMARVIFDKMP 359
Query: 345 SKPTCVIWGALLGACCS 361
+K V W ++ AC
Sbjct: 360 AK-NLVTWTIMVSACAQ 375
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 155/329 (47%), Gaps = 51/329 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ + + + +HG + F+S+ ++ S +D +VKCG + A F M + W
Sbjct: 202 CVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAW 261
Query: 122 --------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
K+G ++ +F +MPE++ VSW +IS R+G G + L F ++
Sbjct: 262 TTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVR 321
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+++ A AS+ L+ G +H+ ++ + + V S LIDMY KCG S+
Sbjct: 322 PDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCG------SL 375
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRR-NMISWMVLISAFSQAGVLE----------- 280
IG+ + F+LM + +++ W +ISA +Q G E
Sbjct: 376 GIGRKV----------------FDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVR 419
Query: 281 ---KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMA----KFTYTCYFVCMVDLLGLSGLL 333
KP F V +L+ CSHSG V +G ++F +M+ ++ C++DLLG +G
Sbjct: 420 SGAKPDKITFVV-ILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCF 478
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
E +++MP KP +W ALLG C H
Sbjct: 479 EEVMDQLEKMPYKPDDRVWNALLGVCRIH 507
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 144/329 (43%), Gaps = 39/329 (11%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW------ 121
+ + L L GL + F+S+ I +M+ KCG A F +M +L+ W
Sbjct: 81 VHLHLKLTGLKRPGTFLSNHLI-----NMYAKCGKEVEARKVFDKMSARNLYSWNNMLSG 135
Query: 122 --KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
K G+I+ +F KMPE+D+VSWNTM+ + G+ E L + E G + +
Sbjct: 136 YAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSF 195
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------IESSI 232
A + + ++ +H +++ +V + S ++D Y+KCG G E S
Sbjct: 196 AGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSA 255
Query: 233 QIGKALVTM---YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF--- 285
+ A TM YA+ G + A+ F M +N +SW LIS +++ G+ K F
Sbjct: 256 RDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKM 315
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLL 333
F F S L C+ + GK + + + T ++D+ G L
Sbjct: 316 MLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSL 375
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G +K+ D M +K V+W ++ A H
Sbjct: 376 GIGRKVFDLMGNKLDVVLWNTIISALAQH 404
>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570 [Vitis vinifera]
Length = 607
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 180/447 (40%), Gaps = 108/447 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ------------LIDDDYRVFCDIGPRY 48
+KAC +K L R +H I L I++ +DD VF I +
Sbjct: 116 LKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKN 175
Query: 49 LFTYNTMING---------GVR-----------------------CLCVGNIKMALHLHG 76
++ T+I G G+R C +G+ LH
Sbjct: 176 EVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHA 235
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
V K F S+ + S +DM+ +C A F +M
Sbjct: 236 AVTKHGFESNLPVMNSILDMYCRCSCFSEANR----------------------YFYEMN 273
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+RDL++WNT+I+ R E+L F + + GF + + + +A A++ L G
Sbjct: 274 QRDLITWNTLIAGYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQ 332
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H R++ G++ ++ + AL+ MY++ G+ + F
Sbjct: 333 IHGRIIR----------------------RGLDGNLALSNALIDMYSKCGNIADSHQVFG 370
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303
MSRR+++SW ++ + G E+ F F+++LS CSH+G V +
Sbjct: 371 GMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDE 430
Query: 304 GKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G YF M Y + C+VDLLG +G + EA +LI+ MP KP +WG LGA
Sbjct: 431 GLRYFKLMVG-DYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGA 489
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C +H L +L +L L + G+
Sbjct: 490 CKAHTFPNLGKLAAHRILDLRPHMAGT 516
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 38/244 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPERD+V+W MI+ T F E+ N ++ ++ A +
Sbjct: 65 LFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKC 124
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +G +H + ++V + L+DMY C S
Sbjct: 125 LSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCV---------------------SMDD 163
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG------------VLEKPRFFFFFVSL-LSGCSH 297
A + F + +N +SW LI+ ++ +LE+ F S+ + C+
Sbjct: 164 ACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTS 223
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGA 354
G T G+ A+ K + M +L + EA + EM + + W
Sbjct: 224 IGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQR-DLITWNT 282
Query: 355 LLGA 358
L+
Sbjct: 283 LIAG 286
>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
Length = 1100
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 141/309 (45%), Gaps = 63/309 (20%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+A +++D++VKCG + A +F KM +D V+W M+
Sbjct: 664 VATAAVDLYVKCGEMAKARE----------------------VFDKMRHKDAVAWGAMVG 701
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+G E L F+ + G A A SA + L+ G R+V + L
Sbjct: 702 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFL 760
Query: 209 DVFV-GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
D V G+ LIDMY KC GST +A + F+ M ++++I W
Sbjct: 761 DNPVLGTALIDMYAKC----------------------GSTVEAWVVFQQMRKKDIIVWN 798
Query: 268 VLI----------SAFSQAGVLEKPRFFF---FFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+I AF+ G +EK F+ LL C+H+G + G+ YF M K
Sbjct: 799 AMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 858
Query: 315 TYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
+ ++ CMVDLL +GLL EA +L+D+MP VI GALLG C H NT+LAE
Sbjct: 859 YHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEH 918
Query: 371 VMRNLLQLD 379
V++ L+ L+
Sbjct: 919 VLKQLILLE 927
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 39/202 (19%)
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA + L G LH+R + + + V + L+ +Y KCG
Sbjct: 534 SASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGL----------------- 576
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF-------------FFFV 289
+A F+ M + + W LI+A+ AG L + F V
Sbjct: 577 -----LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAV 631
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFVCM--VDLLGLSGLLGEAKKLIDEMPSK 346
+L+ C+ + G+ + A + FV VDL G + +A+++ D+M K
Sbjct: 632 RVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHK 691
Query: 347 PTCVIWGALLGACCSHYNTKLA 368
V WGA++G S+ + + A
Sbjct: 692 -DAVAWGAMVGGYASNGHPREA 712
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 147/330 (44%), Gaps = 61/330 (18%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+HGL K F SD + S ID + KC V+ AE +F
Sbjct: 454 QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAER----------------------IF 491
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++ DLVS+ +MI+ ++G G E L F+E+ + + ++ +A A++ E
Sbjct: 492 EECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFE 551
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G LH ++ LD+F G+ L++MY KC GS A
Sbjct: 552 QGKQLHVHILKYGFVLDIFAGNSLVNMYAKC----------------------GSIDDAG 589
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSG 299
AF ++ R ++SW +I +Q G + F VS+L C+H+G
Sbjct: 590 RAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAG 649
Query: 300 PVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
VT+ K YF +M + ++ CM+DLLG +G + EA +L+++MP + +WGAL
Sbjct: 650 LVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGAL 709
Query: 356 LGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
LGA H + +L L L+ + G+
Sbjct: 710 LGAARIHKDVELGRRAAEMLFILEPEKSGT 739
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 95/429 (22%), Positives = 168/429 (39%), Gaps = 93/429 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLI---------STCLISSIFLQLID--DDYRVFCDIGPRYL 49
+ AC L+ + IH LI S + ++ ++ D D VF I +
Sbjct: 265 VNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDI 324
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVK--------KFYFVSDESIAKSSIDMHVKCG 101
++N +I G C+ + + AL L G +K K SD ++ +DM+ KC
Sbjct: 325 VSWNAVIAG---CVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCD 381
Query: 102 AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
++ A AF +PE+DL++WN +IS +++ E L
Sbjct: 382 LLEDARMAF----------------------NLLPEKDLIAWNAIISGYSQYWEDMEALS 419
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F+E+ G G + +T + A + + +H V D++V + LID Y
Sbjct: 420 LFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYG 479
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
KC + A+ FE + +++S+ +I+A++Q G E+
Sbjct: 480 KC----------------------SHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEE 517
Query: 282 PRFFFF-----------FV--SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC---MVD 325
F FV SLL+ C++ +GK + K+ + +V+
Sbjct: 518 ALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVN 577
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH---------YNTKLAELVMRNLL 376
+ G + +A + E+ + V W A++G H +N L E V N +
Sbjct: 578 MYAKCGSIDDAGRAFSELTER-GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHI 636
Query: 377 QLDVKVFGS 385
L V V G+
Sbjct: 637 TL-VSVLGA 644
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 123/324 (37%), Gaps = 61/324 (18%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
+C +++ L +H + K D SI I+++ KC
Sbjct: 65 QCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRX------------------ 106
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
FG R L+ + E DLVSW+ +IS ++G G L F E+ G + +++
Sbjct: 107 --FGYARKLV--DESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSS 162
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A + V DL G +H VV +G E + + LV
Sbjct: 163 VLKACSIVKDLRIGKQVHGVVV----------------------VSGFEGDVFVANTLVV 200
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
MYA+ + F+ + RN++SW L S + Q + F+
Sbjct: 201 MYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFS 260
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMP 344
S+++ C+ ++GK + K Y +VD+ G L +A + +++
Sbjct: 261 LSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKI- 319
Query: 345 SKPTCVIWGALLGACCSHYNTKLA 368
+P V W A++ C H + + A
Sbjct: 320 KQPDIVSWNAVIAGCVLHEHHEQA 343
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 25/175 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+++++ C V ++++ +HG+V F D +A + + M+ KC ++ +S
Sbjct: 158 FTFSSVLKA---CSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCD--EFLDSK 212
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
L F ++PER++VSWN + S + F E + F E+
Sbjct: 213 RL--------------------FDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLS 252
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
G + ++ +A + D G +H ++ + D F + L+DMY K G
Sbjct: 253 GIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG 307
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 173/395 (43%), Gaps = 78/395 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+I +H + KF F D + S I M+ CG + A + F L W
Sbjct: 169 CWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTW 228
Query: 122 -----------KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+ G R L F++MPERDL SWN+MI+ +G + +L+N
Sbjct: 229 NSMIDGYVKNGEIGAAREL--FEEMPERDLFSWNSMIAGYVGNG----DMTAAEDLFNKM 282
Query: 171 FGLSSMLYATAFSARASVYDLE-------WGPH-----------LHSRVVHMEPSLDVFV 212
+ + A V ++E W P+ L+ R+ + L +F
Sbjct: 283 PFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFD 342
Query: 213 G---------SGLIDMYLKCGCNG-----------------IESSIQIGKALVTMYAEGG 246
+ L+ + C G IE + + AL+TMYA+ G
Sbjct: 343 KMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCG 402
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLS 293
+ A F+ MS R+++SW +I + G +K F F+ +LS
Sbjct: 403 AMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLS 462
Query: 294 GCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
C+HSG + +G YF M + ++ CMVDLLG +GL+ + ++LI +MP +
Sbjct: 463 ACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGT 522
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+WGALL AC +H N++LAE+V + L++L+ + G
Sbjct: 523 ALWGALLSACRTHSNSELAEIVAKRLIELEPRDIG 557
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 170/360 (47%), Gaps = 55/360 (15%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
+ L ++N+M+ G + I +AL L + + VS +I I KCG +++A
Sbjct: 222 KNLISWNSMLGGFAQT--KDGIGLALELFEKMPERDLVSWNTI----IGGFAKCGRIEFA 275
Query: 107 ESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGF 157
S F RM + W K G I++ +F +MP++D+V++NT+++ ++G+
Sbjct: 276 HSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYT 335
Query: 158 ETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L F E+ A SA + + +E +H+ +
Sbjct: 336 EALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLE------------- 382
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
NGI + ++ AL+ MY++ GS + A L F+ + ++ + W +IS ++
Sbjct: 383 ---------NGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARN 433
Query: 277 GV--------LEKPRFF-----FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
G+ LE R F+ +L+ C+H+G V +G F M K +
Sbjct: 434 GLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQH 493
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ CMVD+LG +GL+ A K I+EMP +P +IW LL AC +H N + EL+ ++L+ +D
Sbjct: 494 YGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMD 553
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 26/257 (10%)
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+ D WN +I + L F + +GF + ++ A A V +E G
Sbjct: 87 DDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQ 146
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-----------GKALVTMYAEG 245
+H ++ +E ++F+ + LI MYL+CG IE + Q+ +++ Y +
Sbjct: 147 IHGLLMKLEIGSNLFLLNCLIAMYLRCG--DIEFARQVFDRMPIQDSVSYNSMIDGYVKS 204
Query: 246 GSTQKADLAFELM--SRRNMISWMVLISAFSQAG--------VLEK--PRFFFFFVSLLS 293
G+ A F+ M +N+ISW ++ F+Q + EK R + +++
Sbjct: 205 GTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSWNTIIG 264
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + G + F M K + M+D G + A+ L DEMP K
Sbjct: 265 GFAKCGRIEFAHSLFNRMPKRDVISW-SNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNT 323
Query: 354 ALLGACCSHYNTKLAEL 370
+ G + Y T+ E+
Sbjct: 324 IMAGYAQNGYYTEALEI 340
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 113/268 (42%), Gaps = 37/268 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V ++ +HGL+ K S+ + I M+++CG +++A F RM +
Sbjct: 135 CARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSY 194
Query: 122 --------KFGIIRLLI-MFQKMP--ERDLVSWNTMIS--ILTRHGFGFETLCTFIELWN 168
K G I L +F MP +++L+SWN+M+ T+ G G +EL+
Sbjct: 195 NSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLA-----LELFE 249
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
+ + T A +E+ L +R+ P DV S +ID Y K G +
Sbjct: 250 KMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRM----PKRDVISWSNMIDGYAKLGDIKV 305
Query: 229 ---------ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS-----WMVLISAFS 274
+ + ++ YA+ G +A F M R++ +S +V +SA S
Sbjct: 306 ARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAIS 365
Query: 275 QAGVLEKPRFFFFFVSLLSGCSHSGPVT 302
Q G +EK + L +G S +G V
Sbjct: 366 QLGHVEKAASMHNYF-LENGISVTGKVA 392
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 149/334 (44%), Gaps = 60/334 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ +H V + SD + + IDM+ KCG V+ A
Sbjct: 112 CSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQ------------- 158
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F K+ ERD+V WN+M++ +++G E+L + +G + + +
Sbjct: 159 ---------VFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVIS 209
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A A L G LH +G ES+ ++ AL+ M
Sbjct: 210 IAASADNGLLPQGKELHGYSWR----------------------HGFESNDKVKTALMDM 247
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFV 289
YA+ GS A FEL+ + ++SW +I+ ++ G + F FV
Sbjct: 248 YAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVLPDHITFV 307
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+L+ CSH G + +GK +F +M + ++ CM+DLLG G L EA KLI EM
Sbjct: 308 GVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRV 367
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+P +WGALL +C H N ++ EL + L++L+
Sbjct: 368 EPDAGVWGALLHSCKIHGNVEMGELALEKLVELE 401
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 113/268 (42%), Gaps = 51/268 (19%)
Query: 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
+L+C + ++F ++ +R+L WN MI +G + + ++ ++G
Sbjct: 44 NLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKF 103
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ A +++ +E G +H V+ DVFVG+ LIDMY KCGC +ES+ Q+
Sbjct: 104 TFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGC--VESARQV-- 159
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KP 282
F+ + R+++ W +++ +SQ G + KP
Sbjct: 160 ------------------FDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKP 201
Query: 283 RFFFFFVSLLSGCSHSGPVTKGK--------HYFTAMAKFTYTCYFVCMVDLLGLSGLLG 334
F +S ++ + +G + +GK H F + K ++D+ SG +
Sbjct: 202 TEGTFVIS-IAASADNGLLPQGKELHGYSWRHGFESNDKVK-----TALMDMYAKSGSVN 255
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSH 362
A+ L E+ + V W A++ H
Sbjct: 256 VARSLF-ELLEEKRVVSWNAMITGYAMH 282
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 147/327 (44%), Gaps = 43/327 (13%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS-------LFCW-KFGI 125
LH K D +A + + M+ + G D A + F M +P L C+ K G
Sbjct: 152 LHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGA 211
Query: 126 IR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+ +F MP +D + WN MI T+HG E L F + G + A SA
Sbjct: 212 LDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSA 271
Query: 185 RASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGC--------NGI-ESSIQI 234
A + E G LHS V + L+ VG+ LIDMY KCG N I + I +
Sbjct: 272 VAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVV 331
Query: 235 GKALVTMYAEGGSTQKADLAFELMSR-RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLS 293
A++ YA G ++KA E+ S+ R+ W I+ F+ LL+
Sbjct: 332 WNAMINGYAMHGDSRKA---LEMFSQLRSQGLWPTDIT----------------FIGLLN 372
Query: 294 GCSHSGPVTKGKHYFTAM----AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSHSG V +G +F +M A ++ CMVDLLG +GL+ EA L+ M P
Sbjct: 373 ACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDT 432
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLL 376
V+W +LL AC H N L + + L+
Sbjct: 433 VMWVSLLAACRLHKNMALGQQIADYLV 459
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 147/327 (44%), Gaps = 43/327 (13%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS-------LFCW-KFGI 125
LH K D +A + + M+ + G D A + F M +P L C+ K G
Sbjct: 151 LHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGA 210
Query: 126 IR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+ +F MP +D + WN MI T+HG E L F + G + A SA
Sbjct: 211 LDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSA 270
Query: 185 RASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGC--------NGI-ESSIQI 234
A + E G LHS V + L+ VG+ LIDMY KCG N I + I +
Sbjct: 271 VAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVV 330
Query: 235 GKALVTMYAEGGSTQKADLAFELMSR-RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLS 293
A++ YA G ++KA E+ S+ R+ W I+ F+ LL+
Sbjct: 331 WNAMINGYAMHGDSRKA---LEMFSQLRSQGLWPTDIT----------------FIGLLN 371
Query: 294 GCSHSGPVTKGKHYFTAM----AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSHSG V +G +F +M A ++ CMVDLLG +GL+ EA L+ M P
Sbjct: 372 ACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDT 431
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLL 376
V+W +LL AC H N L + + L+
Sbjct: 432 VMWVSLLAACRLHKNMALGQQIADYLV 458
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 166/368 (45%), Gaps = 63/368 (17%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+N+M++ G+ C + ++ LH LV + + + + IDM+ K
Sbjct: 225 FNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAK 284
Query: 100 CGAVDYAESAFL---RMLNPSL-------FCWKFGIIRLL-IMFQKMPERDLVSWNTMIS 148
CG A F R P +C K G + + +F +M + D++++N++I+
Sbjct: 285 CGDTGRAREVFDALGRGRGPQPWNAMIDGYC-KVGHVDIARSLFDQMEDHDVITFNSLIT 343
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
G E L F ++ HG G + +A AS+ L G LH+ +
Sbjct: 344 GYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVER 403
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
DV++G+ L+DM Y + G ++A +AF+ MS R++ +W
Sbjct: 404 DVYLGTALLDM----------------------YMKCGRVEEAMVAFKQMSVRDVHTWSA 441
Query: 269 LIS--AFSQAGVLEKPRFFFF-----------FVSLLSGCSHSGPVTKGKHYFTAMAKF- 314
+I AF+ G FF+ ++++L+ CSHS + +G+ YF M
Sbjct: 442 MIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLH 501
Query: 315 ---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
++ CM+DLLG SGLL EA L+ MP +P VIW ++L AC H N LA+
Sbjct: 502 NIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNA 561
Query: 372 MRNLLQLD 379
+LL+L+
Sbjct: 562 AHHLLKLE 569
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 126/265 (47%), Gaps = 39/265 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++MP RDLVSWN+MIS + G E L + ++ G + S+ A V
Sbjct: 165 VFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGA 224
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H ++FVG+ LIDMY K C + S++ I
Sbjct: 225 LHMGVQMHRFAGERRLVENIFVGNALIDMYAK--CGSLASALSI---------------- 266
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
F M +R++ +W +I + G ++ FF F+ LL GCSH
Sbjct: 267 ----FNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSH 322
Query: 298 SGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G V +G YF M+ +F ++ CMVDL G +G L EA ++I PS+ V+W
Sbjct: 323 QGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWR 382
Query: 354 ALLGACCSHYNTKLAELVMRNLLQL 378
LLG+C H N ++ E+ MRNL+QL
Sbjct: 383 TLLGSCKIHRNVEIGEMAMRNLVQL 407
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF 285
G + + + L+ YA G + A FE M R+++SW +IS + Q G+ E+ + +
Sbjct: 138 GYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMY 197
Query: 286 ------------FFFVSLLSGCSHSGPVTKG--KHYFTAMAKFTYTCYF-VCMVDLLGLS 330
F VSLLS C+H G + G H F + + ++D+
Sbjct: 198 DQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKC 257
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALL 356
G L A + + MP K W +++
Sbjct: 258 GSLASALSIFNSMP-KRDVFTWNSMI 282
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 65/206 (31%)
Query: 1 MKACGSLKSLPIARKIHAQLIS----------TCLISSIFLQ-LIDDDYRVFCDIGPRYL 49
+KAC K R++H +I T LI S LI+ ++VF ++ R L
Sbjct: 115 LKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDL 174
Query: 50 FTYNTMI----------------------NGGV----------RCLCVGNIKMALHLHGL 77
++N+MI N G C VG + M + +H
Sbjct: 175 VSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRF 234
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ V + + + IDM+ KCG++ A L +F MP+
Sbjct: 235 AGERRLVENIFVGNALIDMYAKCGSLASA----------------------LSIFNSMPK 272
Query: 138 RDLVSWNTMISILTRHGFGFETLCTF 163
RD+ +WN+MI HG G E + F
Sbjct: 273 RDVFTWNSMIVGYGVHGRGDEAITFF 298
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 152/325 (46%), Gaps = 47/325 (14%)
Query: 96 MHVKCGAVDYAESAF----LR---MLNPSLFCW--KFGIIRLLIMFQKMPERDLVSWNTM 146
M+ K G VD A AF LR + N L + + + +F MP RDLVSWNTM
Sbjct: 1 MYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTM 60
Query: 147 ISILTRHGFGFETLCTFI-ELWN-----HGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
I HG+ E+++ F SSM+ A A S R S LE +H+
Sbjct: 61 I-----HGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRR-SKEALELWREMHAA 114
Query: 201 VVHMEPSLDVFVGSGLIDM-YLKCGC--------NGIESSIQIGKALVTMYAEGGSTQKA 251
+ + V V S D+ L G N IE +++G AL+ MYA+ G + A
Sbjct: 115 SIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESA 174
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHS 298
F+ M +++ +W +I + G+ + F FV +L C+H
Sbjct: 175 QRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHV 234
Query: 299 GPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G V++GK YF +M + ++ CMVDLLG SG + EA++LI M +P +IW A
Sbjct: 235 GLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRA 294
Query: 355 LLGACCSHYNTKLAELVMRNLLQLD 379
LLGAC H N ++AE M L LD
Sbjct: 295 LLGACRIHKNVEIAEEAMAKLRVLD 319
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + +H V+ D + + IDM+ KCG ++ A+
Sbjct: 130 CSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQR------------- 176
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+F +MPE+D+ +W++MI L HG G E+L F ++ + G
Sbjct: 177 ---------VFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGM 217
>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
Length = 1124
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 141/309 (45%), Gaps = 63/309 (20%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+A +++D++VKCG + A +F KM +D V+W M+
Sbjct: 688 VATAAVDLYVKCGEMAKARE----------------------VFDKMRHKDAVAWGAMVG 725
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+G E L F+ + G A A SA + L+ G R+V + L
Sbjct: 726 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFL 784
Query: 209 DVFV-GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
D V G+ LIDMY KC GST +A + F+ M ++++I W
Sbjct: 785 DNPVLGTALIDMYAKC----------------------GSTVEAWVVFQQMRKKDIIVWN 822
Query: 268 VLI----------SAFSQAGVLEKPRFFF---FFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+I AF+ G +EK F+ LL C+H+G + G+ YF M K
Sbjct: 823 AMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 882
Query: 315 TYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
+ ++ CMVDLL +GLL EA +L+D+MP VI GALLG C H NT+LAE
Sbjct: 883 YHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEH 942
Query: 371 VMRNLLQLD 379
V++ L+ L+
Sbjct: 943 VLKQLILLE 951
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 39/202 (19%)
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA + L G LH+R + + + V + L+ +Y KCG
Sbjct: 558 SASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGL----------------- 600
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF-------------FFFV 289
+A F+ M + + W LI+A+ AG L + F V
Sbjct: 601 -----LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAV 655
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFVCM--VDLLGLSGLLGEAKKLIDEMPSK 346
+L+ C+ + G+ + A + FV VDL G + +A+++ D+M K
Sbjct: 656 RVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHK 715
Query: 347 PTCVIWGALLGACCSHYNTKLA 368
V WGA++G S+ + + A
Sbjct: 716 -DAVAWGAMVGGYASNGHPREA 736
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 142/309 (45%), Gaps = 63/309 (20%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+A +++D++VKCG + A +F KM ++D V+W M+
Sbjct: 209 VATAAVDLYVKCGEMAKARE----------------------VFDKMRDKDAVAWGAMVG 246
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+G E L F+ + G A A SA + L+ G R+V + L
Sbjct: 247 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFL 305
Query: 209 DVFV-GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
D V G+ LIDMY KC GST +A + F+ M ++++I W
Sbjct: 306 DNPVLGTALIDMYAKC----------------------GSTAEAWVVFQQMRKKDIIVWN 343
Query: 268 VLI----------SAFSQAGVLEKPRFFF---FFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+I +AF+ G +EK F+ LL C+H+G + G+ YF M K
Sbjct: 344 AMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 403
Query: 315 TYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
+ ++ C+VDLL +GLL EA +LID+MP VI GALLG C H N +LAE
Sbjct: 404 YHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEH 463
Query: 371 VMRNLLQLD 379
V+ L++L+
Sbjct: 464 VLTQLIRLE 472
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF----------- 285
+L+T+YA G +A F+ M + +SW LI+A+ AG L +
Sbjct: 111 SLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRP 170
Query: 286 --FFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFVCM--VDLLGLSGLLGEAKKLI 340
F V +L+ C+ + G+ + A + FV VDL G + +A+++
Sbjct: 171 DSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVF 230
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLA 368
D+M K V WGA++G S+ + + A
Sbjct: 231 DKMRDK-DAVAWGAMVGGYASNGHPREA 257
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 39/246 (15%)
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
R +F +MP VSW +I+ G E + + +G S +A A
Sbjct: 124 RAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACA 183
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
V DL G + + VFV + +D+Y+KC G
Sbjct: 184 RVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKC----------------------G 221
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLS 293
KA F+ M ++ ++W ++ ++ G + F LS
Sbjct: 222 EMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALS 281
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+ G + G+ + + V ++D+ G EA + +M K +
Sbjct: 282 ACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQM-RKKDII 340
Query: 351 IWGALL 356
+W A++
Sbjct: 341 VWNAMI 346
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 150/344 (43%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC- 120
C GN+ +H +K F I S ++M+ CGA+ A + ++ + +
Sbjct: 227 CAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVS 286
Query: 121 -------WKFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
K G+++ +F +M E+DLV W+ MIS E L F E+
Sbjct: 287 TAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIV 346
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + SA A+V L +H+ NG ++
Sbjct: 347 PDQITMLSVISACANVGALVQAKWIHTYA----------------------DKNGFGRTL 384
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----- 287
I AL+ MYA+ G+ KA FE M R+N+ISW +I+AF+ G + F
Sbjct: 385 PINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQ 444
Query: 288 --------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGE 335
F+ +L CSH+G V +G+ +F++M ++ CMVDL + L +
Sbjct: 445 NIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRK 504
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A +LI+ MP P +IWG+L+ AC +H +L E LL+L+
Sbjct: 505 AMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELE 548
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 148/343 (43%), Gaps = 49/343 (14%)
Query: 68 IKMALHLHGLVKKF-YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+ + L +HGL KF +F +D I + I M+ CG + ++ FL
Sbjct: 131 LNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRI--MDARFL--------------- 173
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
F KM RD+V+WN MI +++ L + E+ G +++ T SA A
Sbjct: 174 -----FDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACA 228
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ---------IGKA 237
+L +G +H + + + + L++MY CG + + + A
Sbjct: 229 HAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTA 288
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA-GVLEKPRFF----------- 285
+++ YA+ G Q A F+ M ++++ W +IS ++++ LE + F
Sbjct: 289 MLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPD 348
Query: 286 -FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLID 341
+S++S C++ G + + K H + F T ++D+ G L +A+++ +
Sbjct: 349 QITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFE 408
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
MP K + W +++ A H + A + + + +++ G
Sbjct: 409 NMPRK-NVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNG 450
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 94/250 (37%), Gaps = 47/250 (18%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F +P N ++ +R TL ++ L +GF L + A + +
Sbjct: 69 LSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKL 128
Query: 189 YDLEWGPHLHSRV-----VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
L G +H H +P F+ S LI MY CG
Sbjct: 129 SALNLGLEIHGLASKFGFFHADP----FIQSALIAMYAACG------------------- 165
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
A F+ MS R++++W ++I +SQ + + +
Sbjct: 166 ---RIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCT 222
Query: 291 LLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+LS C+H+G ++ GK H F F + +V++ G + A+++ D++PSK
Sbjct: 223 VLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKH 282
Query: 348 TCVIWGALLG 357
V L G
Sbjct: 283 MVVSTAMLSG 292
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/432 (23%), Positives = 176/432 (40%), Gaps = 104/432 (24%)
Query: 14 RKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFTYNTMINGGVRC 62
R+IH +I C S ++ L+DD +VF I + L +N +I+G
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHG 384
Query: 63 LCVGN--------------------------------IKMALHLHGLVKKFYFVSDESIA 90
C G I +H L +K F+SD +
Sbjct: 385 GCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVV 444
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150
ID + KC + YA +F++ +++++ +MI+ L
Sbjct: 445 NGLIDSYWKCNCLRYANK----------------------VFEEHSSDNIIAFTSMITAL 482
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
++ G + + F+E+ G + ++ +A AS+ E G +H+ ++ + DV
Sbjct: 483 SQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDV 542
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
F G+ L+ Y KCG S + ADLAF + + ++SW +I
Sbjct: 543 FAGNALVYTYAKCG----------------------SIEDADLAFSGLPDKGVVSWSAMI 580
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF--- 314
+Q G ++ F S+L C+H+G V + K YF++M +
Sbjct: 581 GGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGI 640
Query: 315 -TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
++ CM+DLLG +G L +A +L++ MP + +WGALL A H + +L +L
Sbjct: 641 DRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAE 700
Query: 374 NLLQLDVKVFGS 385
L L+ + G+
Sbjct: 701 KLFVLEPEKSGT 712
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/444 (21%), Positives = 157/444 (35%), Gaps = 118/444 (26%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-QLIDDDYR----------VFCDIGPRYL 49
+ AC + L RK+HA ++ T +F + D Y VF + +
Sbjct: 209 VNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDV 268
Query: 50 FTYNTMINGGVRCLCVGNIKMALHL----------------------------------- 74
++N I+G C+ G+ + AL L
Sbjct: 269 VSWNAFISG---CVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGR 325
Query: 75 --HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
HG + K SD+ I + +DM+ K G +D A +F
Sbjct: 326 QIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARK----------------------VF 363
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+ +P +DL+ WN +IS + G E+L F + G ++ A + AS+ +
Sbjct: 364 EWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAIS 423
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
+H+ + D V +GLID Y KC C + A+
Sbjct: 424 DTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNC----------------------LRYAN 461
Query: 253 LAFELMSRRNMISWMVLISAFSQ----------------AGVLEKPRFFFFFVSLLSGCS 296
FE S N+I++ +I+A SQ G+ P F SLL+ C+
Sbjct: 462 KVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDP---FVLSSLLNACA 518
Query: 297 HSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+GK + K + T F +V G + +A +P K V W
Sbjct: 519 SLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGV-VSWS 577
Query: 354 ALLGACCSHYNTKLAELVMRNLLQ 377
A++G H + K A V R ++
Sbjct: 578 AMIGGLAQHGHGKRALDVFRRMVD 601
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 124/345 (35%), Gaps = 78/345 (22%)
Query: 46 PRY-LFTYNTMINGGVRC---------LCVGNIKMALHLHGLVKKFYFVSDESIAKSSID 95
PR L + M GVRC C + + + +H + D +A + +
Sbjct: 84 PREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANALVA 143
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF 155
M+ G VD A F + +R+ VSWN M+S ++
Sbjct: 144 MYGGFGFVDEARRVF---------------------DEAARDRNAVSWNGMMSAFVKNDR 182
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
+ + F E+ G + ++ +A DLE G +H+ VV DVF +
Sbjct: 183 CSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANA 242
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA--- 272
L+DMY K G A L F + + +++SW IS
Sbjct: 243 LVDMYSKL----------------------GDIHMAALVFGKVPKTDVVSWNAFISGCVL 280
Query: 273 -------------FSQAGVLEKPRFFFFFVSLLS----GCSHSGPVTKGKHYFTAMAKFT 315
+G++ F S+L + + + + H F A
Sbjct: 281 HGHDQHALELLLQMKSSGLVPN---VFTLSSILKACAGAGAGAFALGRQIHGFMIKACAD 337
Query: 316 YTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
Y V +VD+ GLL +A+K+ + +P K ++W AL+ C
Sbjct: 338 SDDYIGVALVDMYAKYGLLDDARKVFEWIPRK-DLLLWNALISGC 381
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 174/421 (41%), Gaps = 73/421 (17%)
Query: 18 AQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVR---------------- 61
A++IS C +SS L YR+F + R F +NT+I
Sbjct: 46 AKIISFCALSSNQFSL-SHAYRLFLGLRHRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLY 104
Query: 62 ----------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105
C + N+ + L H K + + + + M G +D
Sbjct: 105 SNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDS 164
Query: 106 AESAFLRMLNPSLFCWKF---GIIR---LLI---MFQKMPERDLVSWNTMISILTRHGFG 156
A F N + W G +R +LI +F KMPER+ VSW+ MI+ R GF
Sbjct: 165 ARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFF 224
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L F + GF + A +A AS+ L+ G +H + LD +G+ L
Sbjct: 225 EEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDLDRVMGAAL 284
Query: 217 IDMYLKCGCNGIESSI---------QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
IDMY KCGC I SI + L++ A G + A FE M ++
Sbjct: 285 IDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNE 344
Query: 268 VLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCM 323
V FVS+L+ CS G V KG F M+K ++ C+
Sbjct: 345 VT------------------FVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCL 386
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383
VDLLG +G L EAKKL+ EMP KP + GALL A + + +L E + +L QL +
Sbjct: 387 VDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGEETVESLAQLSLDHS 446
Query: 384 G 384
G
Sbjct: 447 G 447
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 126/265 (47%), Gaps = 39/265 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++MP RDLVSWN+MIS + G E L + ++ G + S+ A V
Sbjct: 183 VFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGA 242
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H ++FVG+ LIDMY K C + S++ I
Sbjct: 243 LHMGVQMHRFAGERRLVENIFVGNALIDMYAK--CGSLASALSI---------------- 284
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
F M +R++ +W +I + G ++ FF F+ LL GCSH
Sbjct: 285 ----FNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSH 340
Query: 298 SGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G V +G YF M+ +F ++ CMVDL G +G L EA ++I PS+ V+W
Sbjct: 341 QGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWR 400
Query: 354 ALLGACCSHYNTKLAELVMRNLLQL 378
LLG+C H N ++ E+ MRNL+QL
Sbjct: 401 TLLGSCKIHRNVEIGEMAMRNLVQL 425
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF 285
G + + + L+ YA G + A FE M R+++SW +IS + Q G+ E+ + +
Sbjct: 156 GYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMY 215
Query: 286 ------------FFFVSLLSGCSHSGPVTKG--KHYFTAMAKFTYTCYF-VCMVDLLGLS 330
F VSLLS C+H G + G H F + + ++D+
Sbjct: 216 DQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKC 275
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALL 356
G L A + + MP K W +++
Sbjct: 276 GSLASALSIFNSMP-KRDVFTWNSMI 300
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 65/206 (31%)
Query: 1 MKACGSLKSLPIARKIHAQLIS----------TCLISSIFLQ-LIDDDYRVFCDIGPRYL 49
+KAC K R++H +I T LI S LI+ ++VF ++ R L
Sbjct: 133 LKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDL 192
Query: 50 FTYNTMI----------------------NGGV----------RCLCVGNIKMALHLHGL 77
++N+MI N G C VG + M + +H
Sbjct: 193 VSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRF 252
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ V + + + IDM+ KCG++ A L +F MP+
Sbjct: 253 AGERRLVENIFVGNALIDMYAKCGSLASA----------------------LSIFNSMPK 290
Query: 138 RDLVSWNTMISILTRHGFGFETLCTF 163
RD+ +WN+MI HG G E + F
Sbjct: 291 RDVFTWNSMIVGYGVHGRGDEAITFF 316
>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/396 (24%), Positives = 173/396 (43%), Gaps = 65/396 (16%)
Query: 2 KACGSLKSLPIARKIHAQ-LISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+AC +P + +I TC+ + + ID + + P FT ++++
Sbjct: 51 RACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVV---C 107
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C G++ LH K +D + + ID++ KCG+++ A
Sbjct: 108 ACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASC------------ 155
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+F+ MPER+ V+W+++++ ++ E L F G + + ++
Sbjct: 156 ----------VFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISS 205
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A A + L G +H+ V + FV S L+DMY KC
Sbjct: 206 VIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKC----------------- 248
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
GS ++A + F + ++N++ W +IS F++ + F
Sbjct: 249 -----GSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVT 303
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
+V++LS C H G V KG+ YF M + ++ CMVD+LG GL+ EA +L+ +M
Sbjct: 304 YVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKM 363
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P T +WG+LL +C H N +LAE+ +NL +++
Sbjct: 364 PFAATASMWGSLLASCRIHGNLELAEIAAKNLFEME 399
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 117/304 (38%), Gaps = 61/304 (20%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
HG V + +D + ++M+ KCG I R +F +
Sbjct: 21 HGQVIRLGLETDTLTSNMLMNMYSKCGL----------------------IRRACKVFDE 58
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+PER +VSWN MI ++G + + F+E+ G S ++ A A+ D+ +
Sbjct: 59 IPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFC 118
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
LH+ + DVFVG+ LID+Y KC GS + A
Sbjct: 119 RQLHAFAIKAVVDADVFVGTALIDVYAKC----------------------GSIEDASCV 156
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSGCSHSGPV 301
FE M RN ++W +++ F Q + E+ F S++ C+ +
Sbjct: 157 FEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAAL 216
Query: 302 TKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+G+ H F + +VD+ G + EA L + K V+W A++
Sbjct: 217 IEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNI-EKKNVVLWNAIISG 275
Query: 359 CCSH 362
H
Sbjct: 276 FAKH 279
>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
Length = 623
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/441 (21%), Positives = 179/441 (40%), Gaps = 103/441 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
++AC SL++L + IH +++++ + + +F+ + +DD +VF I + +
Sbjct: 211 LEACASLRTLVEGKTIHERIVASGVETDVFVGTAVVSFYGKCEAVDDARQVFDRIMDKDI 270
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
+N MI + C ++ LH
Sbjct: 271 VCWNAMIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDSCSSTCKMERGSSLHRE 330
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
++S S+ + I+M+ KCG+++ A F+ N +
Sbjct: 331 AAARGYLSHTSVVNALINMYAKCGSLENATRVFIEATNRTT------------------- 371
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
++++WNTMI + E L + + G S + Y T + A+ D G +
Sbjct: 372 -NVITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAVCANFGDFTTGREV 430
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
HSR L GC S + +L+ +Y G+ + A AFE
Sbjct: 431 HSR-------------------SLATGC----CSDVVQNSLICLYGGCGNLEAAQTAFES 467
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKG 304
++ +N++SW +++A+++ G ++ R F+ F S+L CSH+G +G
Sbjct: 468 VASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADEG 527
Query: 305 KHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
YF +M + ++ CMV+LL SG + +A + MP +P W +LLGAC
Sbjct: 528 WSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSLLGACE 587
Query: 361 SHYNTKLAELVMRNLLQLDVK 381
H + + L + LL + +
Sbjct: 588 VHTDKEYGALAAKQLLDAEPR 608
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/418 (19%), Positives = 159/418 (38%), Gaps = 104/418 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL-----ISSIFLQL------IDDDYRVFCDIGPRYL 49
+K G+ KSL R++H+Q+IS L + ++ +Q+ +DD F I R +
Sbjct: 9 LKQYGNSKSLADGRRVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFRGIHQRNV 68
Query: 50 FTYNTMI-----NGGVR---------------------------CLCVGNIKMALHLHGL 77
F++ +I NG C G++ + +H
Sbjct: 69 FSWTILISLLVQNGEASEGLELLKFMDLEGTEANKITFISLLGACSVTGDLSLGKKIHER 128
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V+ +D + ++M+ C ++D A ++F++M
Sbjct: 129 VRAKGLETDIITGNALLNMYTTCDSLDEAR----------------------LVFERMVF 166
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VSW +IS G+ E L + + ++ + A AS+ L G +
Sbjct: 167 RDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTI 226
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H R+V +G+E+ + +G A+V+ Y + + A F+
Sbjct: 227 HERIV----------------------ASGVETDVFVGTAVVSFYGKCEAVDDARQVFDR 264
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKG 304
+ ++++ W +I A++Q EK + ++LL CS + + +G
Sbjct: 265 IMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDSCSSTCKMERG 324
Query: 305 KHYFTAMAK---FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI-WGALLGA 358
A ++T ++++ G L A ++ E ++ T VI W ++ A
Sbjct: 325 SSLHREAAARGYLSHTSVVNALINMYAKCGSLENATRVFIEATNRTTNVITWNTMIVA 382
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 123/288 (42%), Gaps = 65/288 (22%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+ M+ +CG++D A +AF + + +R++ SW +IS+L ++
Sbjct: 44 VQMYGRCGSLDDARAAF----------------------RGIHQRNVFSWTILISLLVQN 81
Query: 154 GFGFE--TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211
G E L F++L G + + + + A + DL G +H RV
Sbjct: 82 GEASEGLELLKFMDL--EGTEANKITFISLLGACSVTGDLSLGKKIHERV---------- 129
Query: 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271
G+E+ I G AL+ MY S +A L FE M R+++SW ++IS
Sbjct: 130 ------------RAKGLETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIIS 177
Query: 272 AFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKH-YFTAMAKFTYT 317
A++ AG LE + + +S+L C+ + +GK + +A T
Sbjct: 178 AYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVET 237
Query: 318 CYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
FV +V G + +A+++ D + K V W A++GA ++
Sbjct: 238 DVFVGTAVVSFYGKCEAVDDARQVFDRIMDKDI-VCWNAMIGAYAQNH 284
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 142/309 (45%), Gaps = 63/309 (20%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+A +++D++VKCG + A +F KM ++D V+W M+
Sbjct: 256 VATAAVDLYVKCGEMAKARE----------------------VFDKMRDKDAVAWGAMVG 293
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+G E L F+ + G A A SA + L+ G R+V + L
Sbjct: 294 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFL 352
Query: 209 DVFV-GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
D V G+ LIDMY KC GST +A + F+ M ++++I W
Sbjct: 353 DNPVLGTALIDMYAKC----------------------GSTAEAWVVFQQMRKKDIIVWN 390
Query: 268 VLI----------SAFSQAGVLEKPRFFF---FFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+I +AF+ G +EK F+ LL C+H+G + G+ YF M K
Sbjct: 391 AMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 450
Query: 315 TYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
+ ++ C+VDLL +GLL EA +LID+MP VI GALLG C H N +LAE
Sbjct: 451 YHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEH 510
Query: 371 VMRNLLQLD 379
V+ L++L+
Sbjct: 511 VLTQLIRLE 519
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF----------- 285
+L+T+YA G +A F+ M + +SW LI+A+ AG L +
Sbjct: 158 SLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRP 217
Query: 286 --FFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFVCM--VDLLGLSGLLGEAKKLI 340
F V +L+ C+ + G+ + A + FV VDL G + +A+++
Sbjct: 218 DSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVF 277
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLA 368
D+M K V WGA++G S+ + + A
Sbjct: 278 DKMRDK-DAVAWGAMVGGYASNGHPREA 304
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 39/246 (15%)
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
R +F +MP VSW +I+ G E + + +G S +A A
Sbjct: 171 RAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACA 230
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
V DL G + + VFV + +D+Y+KC G
Sbjct: 231 RVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKC----------------------G 268
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLS 293
KA F+ M ++ ++W ++ ++ G + F LS
Sbjct: 269 EMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALS 328
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+ G + G+ + + V ++D+ G EA + +M K +
Sbjct: 329 ACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQM-RKKDII 387
Query: 351 IWGALL 356
+W A++
Sbjct: 388 VWNAMI 393
>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Glycine max]
Length = 611
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 121/452 (26%), Positives = 190/452 (42%), Gaps = 103/452 (22%)
Query: 4 CGSLKSLPI-ARKIHAQLISTCL-----ISSIFLQ------LIDDDYRVFCDIGPRY--- 48
C + + P+ A+K+HAQ+I L I + L LI D ++F D PR
Sbjct: 12 CSAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLF-DALPRRDPV 70
Query: 49 ----LFTYNTMINGGVRCLCVGNIKMALHLH-------GLVK------------------ 79
L T + N R L + ++ H LVK
Sbjct: 71 AWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHA 130
Query: 80 KFYF--VSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCW------------KFG 124
+F+ SD+ + KSS IDM+ K G DY + F + + + W KF
Sbjct: 131 RFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFE 190
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS-MLYATAFS 183
RL F++ P R+L +W +IS L + G G + F+E+ + G ++ ++ ++
Sbjct: 191 AFRL---FRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVG 247
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A++ E G +H V+ + G ES + I AL+ MYA
Sbjct: 248 ACANLALWELGKQMHGVVITL----------------------GYESCLFISNALIDMYA 285
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
+ A F M R++++SW +I +Q G E+ + FV
Sbjct: 286 KCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVG 345
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
L+ CSH+G V+KG+ F M + ++ C++DL SG L EA+ LI MP
Sbjct: 346 LIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVN 405
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P W ALL +C H NT++A + +LL L
Sbjct: 406 PDEPTWAALLSSCKRHGNTQMAVRIADHLLNL 437
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 171/383 (44%), Gaps = 55/383 (14%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
I+ +++F +I + + ++N I+G GN K AL L + K DES +
Sbjct: 185 IESAHKMFDEIPVKDVVSWNAXISGYAE---TGNYKEALELFKKMMKTNVRPDESTMVTV 241
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI--------------MFQKMPERD 139
+ + G+++ +N F I+ LI +FQ + +D
Sbjct: 242 LSACAQSGSIELGRQVH-SWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKD 300
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
++SWNT+I T E L F ++ G + + + SA A + ++ G
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIG----- 355
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
R +H+ ID LK G+ ++ + +L+ MYA+ G + A F+ M
Sbjct: 356 RWIHV-----------YIDKRLK----GVTNASSLRTSLIDMYAKCGDIEAAQQVFDSML 400
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
R++ SW +I F+ G F FV LLS CSHSG + G+H
Sbjct: 401 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRH 460
Query: 307 YFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
F +M + ++ CM+DL G SGL EA+K+I+ M +P VIW +LL AC H
Sbjct: 461 IFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMH 520
Query: 363 YNTKLAELVMRNLLQLDVKVFGS 385
N +L E +NL++++ + GS
Sbjct: 521 GNVELGESYAQNLIKIEPENPGS 543
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 126/315 (40%), Gaps = 50/315 (15%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW------- 121
K LHG V KF F D I S I M+V+ G ++ A+ + + + +
Sbjct: 120 KEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGY 179
Query: 122 --KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
+ I MF ++P +D+VSWN IS G E L F ++
Sbjct: 180 ASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMV 239
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
T SA A +E G +HS + +G +++I AL+
Sbjct: 240 TVLSACAQSGSIELGRQVHSWI----------------------NDHGFGXNLKIVNALI 277
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
+Y++ G + A F+ +S +++ISW LI ++ + ++ F
Sbjct: 278 DLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDV 337
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAK-----FTYTCYFVCMVDLLGLSGLLGEAKKLID 341
+S+LS C+H G + G+ + K + ++D+ G + A+++ D
Sbjct: 338 TMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFD 397
Query: 342 EMPSKPTCVIWGALL 356
M ++ + W A++
Sbjct: 398 SMLNR-SLSSWNAMI 411
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 30/281 (10%)
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
G+ + +F + E L+ WNTM L ++ + + G +S +
Sbjct: 52 GLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLK 111
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK------- 236
+ A + G LH +V+ LD+++ + LI MY++ G +E + ++
Sbjct: 112 SCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNG--RLEDAQKVXDKSSHRDV 169
Query: 237 ----ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
AL+T YA G + A F+ + ++++SW IS +++ G ++ F
Sbjct: 170 VSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKT 229
Query: 287 -------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEA 336
V++LS C+ SG + G+ H + F V ++DL G L A
Sbjct: 230 NVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETA 289
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
L + +K + W L+G K A L+ +++L+
Sbjct: 290 CGLFQGLSNKDV-ISWNTLIGGYTHMNLYKEALLLFQDMLR 329
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 149/342 (43%), Gaps = 74/342 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V N ++ +HG+ K + + +D + KCG V +
Sbjct: 202 CSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRK------------- 248
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG------LSS 175
+F M E+D+VSWN+MI++ ++G + F + G G LS+
Sbjct: 249 ---------VFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLST 299
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+L A A V G LH +V+ M +V + + +IDMY KCG
Sbjct: 300 LLLACAHEGALRV-----GMCLHDQVIKMGYVNNVIMATSIIDMYCKCG----------- 343
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------- 287
+ A AF+ M +N+ SW +I+ + G + F+
Sbjct: 344 -----------QAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVK 392
Query: 288 -----FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAK 337
F+S+L+ CSH+G + +G +F AM+ Y ++ CMVDLLG +G + EA
Sbjct: 393 PNYITFISVLAACSHAGFLEEGWRWFNAMS-HEYNVEPGVEHYGCMVDLLGRAGYIKEAY 451
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LI M + V+WG+LL AC H + +LAE+ R L +LD
Sbjct: 452 NLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLD 493
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 49/256 (19%)
Query: 128 LLIMFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
L +F K +R D+ SWN++I+ L R G E+L F + + + A + +
Sbjct: 34 LTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCS 93
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+++DL G H + + VF G ES + + AL+ MY++ G
Sbjct: 94 ALFDLNSGKQAHQQAL-------VF---------------GFESDLFVSSALIDMYSKCG 131
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP----RFFFF--------------- 287
A + F+ + RRN+++W LI+ + Q + + F F
Sbjct: 132 KLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVD 191
Query: 288 ---FVSLLSGCSH--SGPVTKGKHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLID 341
+S+LS CS + V++G H ++D G + ++K+ D
Sbjct: 192 SVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFD 251
Query: 342 EMPSKPTCVIWGALLG 357
+M K V W +++
Sbjct: 252 DMAEKDV-VSWNSMIA 266
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/308 (20%), Positives = 117/308 (37%), Gaps = 57/308 (18%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
H LV F F SD ++ + IDM+ KCG + A ++F
Sbjct: 105 HQQALV--FGFESDLFVSSALIDMYSKCGKLSNAR----------------------VLF 140
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++P R++V+W ++I+ ++ E L F E + T+ + A + L
Sbjct: 141 DEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLS 200
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
+ ++ V G+ + +K G + + + + L+ YA+ G +
Sbjct: 201 ACSRVSNKA----------VSEGVHGVAIKVGLDKV---MGVENTLLDAYAKCGEVSLSR 247
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---------------FVSLLSGCSH 297
F+ M+ ++++SW +I+ ++Q G L F F +LL C+H
Sbjct: 248 KVFDDMAEKDVVSWNSMIAVYAQNG-LSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAH 306
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G + G + K Y + ++D+ G A+ D M K W A
Sbjct: 307 EGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEK-NVRSWTA 365
Query: 355 LLGACCSH 362
++ H
Sbjct: 366 MIAGYGMH 373
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 168/374 (44%), Gaps = 57/374 (15%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHL-HGLVKKFYFVSDESIAKSSIDMH 97
+VF ++ R L ++ +I G RC G++ A L G+V + D + ID +
Sbjct: 179 KVFDEMSVRSLVSWTAVIVGYARC---GDMVEARKLFDGMVDR-----DVAAFNVMIDGY 230
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMIS 148
VK G +D A F +M ++ W + +F MPE++++SWN MI
Sbjct: 231 VKMGRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIR 290
Query: 149 ILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
++G + L F E+ N ++ + + A A + L+ G +H V
Sbjct: 291 GYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQR---- 346
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
N ++ S+ + ALV MYA+ G KA L FE M+ ++ SW
Sbjct: 347 ------------------NQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWN 388
Query: 268 VLISAFSQAGVLEKPRFFFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKF 314
LI+ + G ++ F + S+LS C+H G V +G+ F AM +F
Sbjct: 389 ALINGYGVNGCAKEALEVFAMMLREGFEPNQITMTSVLSACNHCGLVEEGRRCFEAMERF 448
Query: 315 ---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
++ CM+DLLG +G L EA+KLI MP P +I + L ACC + AE +
Sbjct: 449 GIVPQIEHYGCMIDLLGRAGRLDEAEKLIQAMPYDPNEIILTSFLFACCYFEDVSRAERI 508
Query: 372 MRNLLQLDVKVFGS 385
++ ++++ + G
Sbjct: 509 LKVAVKMEKEGAGD 522
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 47/218 (21%)
Query: 167 WNHGFGLSSMLYATAFSARASVYDL-------------EWGPHLHSRVVHMEPSLDVFVG 213
+NHGF L + F R S Y G +H V+ LD++VG
Sbjct: 103 FNHGFTLYNQFSKDCF-FRPSSYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVG 161
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+ L+DMY+K G G + F+ MS R+++SW +I +
Sbjct: 162 TSLVDMYVKFGDVGFARKV----------------------FDEMSVRSLVSWTAVIVGY 199
Query: 274 SQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMV 324
++ G + + R F F ++ G G + + F M + + MV
Sbjct: 200 ARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLARDLFDKM-RVKNVISWTSMV 258
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G + EA+ L D MP K + W A++ C +
Sbjct: 259 HGYSEDGDVDEARFLFDCMPEK-NVLSWNAMIRGYCQN 295
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+T+ ++ G C + +HG+V K +F D + S +DM+VK G V +A
Sbjct: 124 YTFTLILKG---CSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKV 180
Query: 110 FLRMLNPSLFCWKFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHG 154
F M SL W I + +F M +RD+ ++N MI + G
Sbjct: 181 FDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKMG 234
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 153/347 (44%), Gaps = 61/347 (17%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F T+++ C +G+ K+ + V + V + ++ + IDM+ KCG
Sbjct: 218 FDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCG-------- 269
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ G R L F M RD+V+W+ MIS T+ E L F E+
Sbjct: 270 ------------ELGKARRL--FDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLA 315
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + + SA A + LE G +HS + SL + +G+ L+D Y KCGC I+
Sbjct: 316 EVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGC--ID 373
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+++ AFE M +N +W LI + G + F
Sbjct: 374 DAVE--------------------AFESMPVKNSWTWTALIKGMATNGRGREALELFSSM 413
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
F+ +L CSHS V +G+ +F +M + ++ C+VDLLG +GL
Sbjct: 414 RKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGL 473
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ EA + I MP +P VIW ALL +C H N ++ E ++ ++ L+
Sbjct: 474 IDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLN 520
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ-----------AGVLEKPRFF 285
+L+ MYA A L F+ + ++ W +I+A+ + G+LE F
Sbjct: 159 SLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAF 218
Query: 286 --FFFVSLLSGCSHSGPVTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLI 340
VS+++ C G GK Y ++D+ G LG+A++L
Sbjct: 219 DEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLF 278
Query: 341 DEMPSKPTCVIWGALL 356
D M S+ V W A++
Sbjct: 279 DGMQSR-DVVAWSAMI 293
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 143/329 (43%), Gaps = 61/329 (18%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+ + LHG + K + + +DM+ KCG +D A
Sbjct: 377 LNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLA--------------------- 415
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F ++ E+D + WN+MI+ +++G E + F ++ G + + A SA A+
Sbjct: 416 -CRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACAN 474
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ L +G +H ++ D++ S LIDMY KCG +
Sbjct: 475 LPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRV--------------- 519
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
F+ M +N +SW +ISA+ G L++ F F+ ++S
Sbjct: 520 -------FDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISA 572
Query: 295 CSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C H+G V +G Y+ M + ++ C+ D+ G +G L EA + I+ MP P
Sbjct: 573 CGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAG 632
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WG LLGAC H N +LAE+ ++L LD
Sbjct: 633 VWGTLLGACHIHGNVELAEVASKHLFDLD 661
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 172/442 (38%), Gaps = 71/442 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL------------QLIDDDYRVFCDIGPRY 48
+KAC LKS+ + + +H + L +F+ L D Y +F +I +
Sbjct: 65 VKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQY-LFDNIPQKD 123
Query: 49 LFTYNTMINGGVRCLCVGN-IKMALHL-HGLVKK--------FYFVSDESIAKSSIDMH- 97
+N M+NG V+ GN IK+ L + H +K + E++ +H
Sbjct: 124 SVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHG 183
Query: 98 --VKCG-AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG 154
V CG +D + L + C + +F +P+ DLVSWN +IS ++G
Sbjct: 184 IAVGCGLELDSPVANTLLAMYSKCQCLQAA----RKLFDTLPQSDLVSWNGIISGYVQNG 239
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
E F + + G S+ +A+ + L+ +H ++ LDVF+ S
Sbjct: 240 LMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKS 299
Query: 215 GLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM-- 263
LID+Y KC C + +++ Y G ++A AF + + M
Sbjct: 300 ALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKP 359
Query: 264 --ISWMVLISAFSQAGVL----------------EKPRFFFFFVSLLSGCSHSGPVTKGK 305
+++ + AF+ L EK + + + C G +
Sbjct: 360 TSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKC---GRLDLAC 416
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT---CVIWGALLGACCS- 361
F + + C+ M+ +G GEA L +M + T CV L AC +
Sbjct: 417 RVFNRITEKDAICWN-SMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANL 475
Query: 362 ---HYNTKLAELVMRNLLQLDV 380
HY ++ L+++ L+ D+
Sbjct: 476 PALHYGKEIHGLMIKGPLRSDL 497
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 162/363 (44%), Gaps = 52/363 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+ Y ++I C + I L +H +V K ++ + S +DM+ K A
Sbjct: 114 YIYTSLIKA---CAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQV 170
Query: 110 FLRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M + W + + +F +M ERD++SWN MI ++G + +
Sbjct: 171 FDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAI 230
Query: 161 CTFIELWN-HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
F E+ G + + SA A V L++G + V L++++G+ LIDM
Sbjct: 231 EVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDM 290
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y KC G+ ++A F+ M R++ISW +I G
Sbjct: 291 YAKC----------------------GTMEEARRIFDGMRERDVISWSTMICGSGTHGDA 328
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVC 322
++ ++ F+ LLS CSH+G V KG F+ M + ++ C
Sbjct: 329 DEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGC 388
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
++DLL +G L EA+ LI+ MP +P ++WGALLG C H + + E V ++LL+LD +
Sbjct: 389 VIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGGCRIHKDFRRGERVAQHLLELDSEY 448
Query: 383 FGS 385
GS
Sbjct: 449 TGS 451
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 126/265 (47%), Gaps = 39/265 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++MP RDLVSWN+MIS + G E L + ++ G + S+ A V
Sbjct: 558 VFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGA 617
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H ++FVG+ LIDMY K C + S++ I
Sbjct: 618 LHMGVQMHRFAGERRLVENIFVGNALIDMYAK--CGSLASALSI---------------- 659
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
F M +R++ +W +I + G ++ FF F+ LL GCSH
Sbjct: 660 ----FNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSH 715
Query: 298 SGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G V +G YF M+ +F ++ CMVDL G +G L EA ++I PS+ V+W
Sbjct: 716 QGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWR 775
Query: 354 ALLGACCSHYNTKLAELVMRNLLQL 378
LLG+C H N ++ E+ MRNL+QL
Sbjct: 776 TLLGSCKIHRNVEIGEMAMRNLVQL 800
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 65/206 (31%)
Query: 1 MKACGSLKSLPIARKIHAQLIS----------TCLISSIFLQ-LIDDDYRVFCDIGPRYL 49
+KAC K R++H +I T LI S LI+ ++VF ++ R L
Sbjct: 508 LKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDL 567
Query: 50 FTYNTMI----------------------NGGV----------RCLCVGNIKMALHLHGL 77
++N+MI N G C VG + M + +H
Sbjct: 568 VSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRF 627
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ V + + + IDM+ KCG++ A L +F MP+
Sbjct: 628 AGERRLVENIFVGNALIDMYAKCGSLASA----------------------LSIFNSMPK 665
Query: 138 RDLVSWNTMISILTRHGFGFETLCTF 163
RD+ +WN+MI HG G E + F
Sbjct: 666 RDVFTWNSMIVGYGVHGRGDEAITFF 691
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF 285
G + + + L+ YA G + A FE M R+++SW +IS + Q G+ E+ + +
Sbjct: 531 GYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMY 590
Query: 286 ------------FFFVSLLSGCSHSGPVTKG--KHYFTAMAKFTYTCYF-VCMVDLLGLS 330
F VSLLS C+H G + G H F + + ++D+
Sbjct: 591 DQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKC 650
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALL 356
G L A + + MP K W +++
Sbjct: 651 GSLASALSIFNSMP-KRDVFTWNSMI 675
>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
1
gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 684
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 185/447 (41%), Gaps = 108/447 (24%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYLF 50
KA SL+ ++IHA + I +F+ +L DD ++F +I R L
Sbjct: 116 KAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLE 175
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
T+N I+ V C ++ + + LHGLV
Sbjct: 176 TWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLV 235
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ F +D S+ ID + KC + +E I+F +M +
Sbjct: 236 LRSGFDTDVSVCNGLIDFYGKCKQIRSSE----------------------IIFTEMGTK 273
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+ VSW ++++ ++ + ++ S + ++ SA A + LE G +H
Sbjct: 274 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIH 333
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ V C +E +I +G ALV MY + G + ++ AF+ M
Sbjct: 334 AHAVK--------------------AC--VERTIFVGSALVDMYGKCGCIEDSEQAFDEM 371
Query: 259 SRRNMISWMVLISAFSQAGVLE---------KPR------FFFFFVSLLSGCSHSGPVTK 303
+N+++ LI ++ G ++ PR + FVSLLS CS +G V
Sbjct: 372 PEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVEN 431
Query: 304 GKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F +M + TY ++ C+VD+LG +G++ A + I +MP +PT +WGAL A
Sbjct: 432 GMKIFDSM-RSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNA 490
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H +L L NL +LD K G+
Sbjct: 491 CRMHGKPQLGLLAAENLFKLDPKDSGN 517
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 46/265 (17%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++ + P R++VSW ++IS L ++G L F E+ G + + AF A AS+
Sbjct: 63 LVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLR 122
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
G +H+ V LDVFVG DMY K
Sbjct: 123 LPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLR----------------------D 160
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPR-----FFFF-----------FVSLLS 293
A F+ + RN+ +W IS G +PR F F F + L+
Sbjct: 161 DARKLFDEIPERNLETWNAFISNSVTDG---RPREAIEAFIEFRRIDGHPNSITFCAFLN 217
Query: 294 GCSHSGPVTKGKHYFTAMAKFTY-TCYFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CS + G + + + T VC ++D G + ++ + EM +K V
Sbjct: 218 ACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTK-NAV 276
Query: 351 IWGALLGA-CCSHYNTKLAELVMRN 374
W +L+ A +H + K + L +R+
Sbjct: 277 SWCSLVAAYVQNHEDEKASVLYLRS 301
>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
Length = 716
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 151/358 (42%), Gaps = 67/358 (18%)
Query: 39 RVFCDIGPRYLFTYNTM-INGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
+ F +I P + T + + +R L +G +HGL K V + + +DM+
Sbjct: 358 KRFANIAPNSVTTATVLSASAQLRDLSLGK-----SIHGLAVKLGLVEYNVVGNALVDMY 412
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
KC AV A+ F R+ N +D+V+WN+MIS + G
Sbjct: 413 AKCQAVSEADRIFGRISN----------------------KDVVAWNSMISGYAENNMGD 450
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
+ L F ++ G ++ A SA + DL G +H V +++V + L+
Sbjct: 451 DALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALL 510
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
++Y KC G A F+ M+ RN ++W +I + G
Sbjct: 511 NLYNKC----------------------GDLLSARRVFDEMNDRNSVTWCAMIGGYGMQG 548
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK-FTYTC---YF 320
F F S+LS CSHSG VT GK YF +MA+ F T ++
Sbjct: 549 DSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHY 608
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
CMVD+L +G L +A + ID MP + +WGA L C H + AE ++ ++ L
Sbjct: 609 ACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVL 666
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 139/331 (41%), Gaps = 64/331 (19%)
Query: 43 DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
D P +T T+I C + + +HG V K +S+ I+ + +DM+VKCG
Sbjct: 260 DNVPPSEYTIATVITA---CSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGE 316
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+D+A +F ++ DLV W TMI T++G + L
Sbjct: 317 LDHAR----------------------CVFDELSYIDLVLWTTMIVGYTQNGNPLDALRL 354
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F++ +S+ AT SA A + DL G +H V + GL++ +
Sbjct: 355 FLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKL----------GLVEYNV- 403
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
+G ALV MYA+ + +AD F +S +++++W +IS +++ + +
Sbjct: 404 -----------VGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDA 452
Query: 283 RFFFFFVSL-------------LSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDL 326
F +SL LS G + GK H + F Y +++L
Sbjct: 453 LMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNL 512
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
G L A+++ DEM + + V W A++G
Sbjct: 513 YNKCGDLLSARRVFDEMNDRNS-VTWCAMIG 542
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 39/242 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+++P+R++VSW +MIS ++GF + L F ++ S AT +A ++++
Sbjct: 222 VFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFG 281
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H V+ + F+ + L+DMY+KC G
Sbjct: 282 LHQGRWMHGSVIKQGLMSNSFISAALLDMYVKC----------------------GELDH 319
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFFF------------FFVSLLSGCSH 297
A F+ +S +++ W +I ++Q G L+ R F ++LS +
Sbjct: 320 ARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQ 379
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
++ GK K Y V +VD+ + EA ++ + +K V W +
Sbjct: 380 LRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDV-VAWNS 438
Query: 355 LL 356
++
Sbjct: 439 MI 440
>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 109/406 (26%), Positives = 171/406 (42%), Gaps = 76/406 (18%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRC 62
AC L + +++HA+LI+ L D+D Y+ ++ G+ C
Sbjct: 241 ACAGLGFHRLGKQLHARLITEGL---------DND-------------DYDGRLSKGLIC 278
Query: 63 L--CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
+ +G + A ++ +Y V I+ +++ G +D A++ F M
Sbjct: 279 MYSSIGFMDYAHYIFNKNSNYYVVQS---CNYMINGYIRIGLLDKAQNLFDTMPVRDKIT 335
Query: 121 WKFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W I L+ +F MPE+D V+W TMIS R+ E F E+ G
Sbjct: 336 WTSMIDGYLVIGNVSEACSLFLYMPEKDAVAWTTMISGHVRNELFAEATYLFSEMLTQGV 395
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
S YA F A +V L+ G LH+ + D+ + + LI MY KC
Sbjct: 396 RPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLSDNDLILENSLISMYAKC-------- 447
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
G + A F M ++ISW +I FS G+ + F
Sbjct: 448 --------------GEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLANEALEVFEAMVD 493
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLG 334
F+ +LS CSH+G + +G F AM+ +++CMV+LLG +G L
Sbjct: 494 SGTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQPGLEHYICMVNLLGRAGKLK 553
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACC-SHYNTKLAELVMRNLLQLD 379
EA++LI +P + IWGALLG C S N +A+ +L+LD
Sbjct: 554 EAEELILGLPLERNHAIWGALLGVCSFSEKNADIAKRAATRILELD 599
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 117/280 (41%), Gaps = 44/280 (15%)
Query: 40 VFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS------ 93
+F ++ R + ++N MI G +R +G ++ V DES K++
Sbjct: 94 LFEEMPDRNVVSWNAMIVGLIR-------------NGDLEAARMVFDESPVKNAASWNGM 140
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRL-LIMFQKMPERDLVSWN 144
I + + G ++ A + F M + ++ W + G + +F+ MP+R++VSW
Sbjct: 141 IAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWT 200
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSML--YATAFSARASVYDLEWGPHLHSRVV 202
MI T +GF + L F+E+ G ++ + + + A A + G LH+R++
Sbjct: 201 AMIGGFTWNGFYEDALLLFLEM-KRGADITPNIETFISLAYACAGLGFHRLGKQLHARLI 259
Query: 203 HMEPSLDVFVG---SGLIDMYLKCG----------CNGIESSIQIGKALVTMYAEGGSTQ 249
D + G GLI MY G N +Q ++ Y G
Sbjct: 260 TEGLDNDDYDGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLD 319
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV 289
KA F+ M R+ I+W +I + G + + F ++
Sbjct: 320 KAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYM 359
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL--------EK 281
S I +L++ Y+ G +A F++M RN +S+ L+S Q G L E
Sbjct: 8 SRIVYWTSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEM 67
Query: 282 P-RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLI 340
P R + S+L G + +G + + K F M + +V L+ +G L A+ +
Sbjct: 68 PERNVVSWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLI-RNGDLEAARMVF 126
Query: 341 DEMPSKPTCVIWGALLG 357
DE P K G + G
Sbjct: 127 DESPVKNAASWNGMIAG 143
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 49/197 (24%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MPER+ VS+N ++S L + G E + F E+
Sbjct: 32 LFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEMPERNV------------------- 72
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI-----ESSIQIGKALVTMYAEG 245
+ W L GL D C + + ++ A++
Sbjct: 73 VSWTSML----------------CGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRN 116
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCS 296
G + A + F+ +N SW +I+ +++ G +E+ R F + S++SG
Sbjct: 117 GDLEAARMVFDESPVKNAASWNGMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYC 176
Query: 297 HSGPVTKGKHYFTAMAK 313
+G V +G H F M K
Sbjct: 177 RAGEVEEGYHLFRTMPK 193
>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
Length = 634
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 185/447 (41%), Gaps = 108/447 (24%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYLF 50
KA SL+ ++IHA + I +F+ +L DD ++F +I R L
Sbjct: 66 KAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLE 125
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
T+N I+ V C ++ + + LHGLV
Sbjct: 126 TWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLV 185
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ F +D S+ ID + KC + +E I+F +M +
Sbjct: 186 LRSGFDTDVSVCNGLIDFYGKCKQIRSSE----------------------IIFTEMGTK 223
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+ VSW ++++ ++ + ++ S + ++ SA A + LE G +H
Sbjct: 224 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIH 283
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ V C +E +I +G ALV MY + G + ++ AF+ M
Sbjct: 284 AHAVK--------------------AC--VERTIFVGSALVDMYGKCGCIEDSEQAFDEM 321
Query: 259 SRRNMISWMVLISAFSQAGVLE---------KPR------FFFFFVSLLSGCSHSGPVTK 303
+N+++ LI ++ G ++ PR + FVSLLS CS +G V
Sbjct: 322 PEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVEN 381
Query: 304 GKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F +M + TY ++ C+VD+LG +G++ A + I +MP +PT +WGAL A
Sbjct: 382 GMKIFDSM-RSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNA 440
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H +L L NL +LD K G+
Sbjct: 441 CRMHGKPQLGLLAAENLFKLDPKDSGN 467
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 46/265 (17%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++ + P R++VSW ++IS L ++G L F E+ G + + AF A AS+
Sbjct: 13 LVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLR 72
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
G +H+ V LDVFVG DMY K
Sbjct: 73 LPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLR----------------------D 110
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPR-----FFFF-----------FVSLLS 293
A F+ + RN+ +W IS G +PR F F F + L+
Sbjct: 111 DARKLFDEIPERNLETWNAFISNSVTDG---RPREAIEAFIEFRRIDGHPNSITFCAFLN 167
Query: 294 GCSHSGPVTKGKHYFTAMAKFTY-TCYFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CS + G + + + T VC ++D G + ++ + EM +K V
Sbjct: 168 ACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTK-NAV 226
Query: 351 IWGALLGA-CCSHYNTKLAELVMRN 374
W +L+ A +H + K + L +R+
Sbjct: 227 SWCSLVAAYVQNHEDEKASVLYLRS 251
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 40/269 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPERDL+SW MI+ + G E L F E+ G + A +A A++
Sbjct: 151 VFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAALAACANLGA 210
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +G +H VV + +V V + LID+Y +CGC +E + Q+
Sbjct: 211 LSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGC--VEFARQV---------------- 252
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG----------VLEKPRF---FFFFVSLLSGCSH 297
F+ M +R ++SW +I F+ G +++ RF F L+ CSH
Sbjct: 253 ----FDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSH 308
Query: 298 SGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G V +G YF AM + ++ C+VDL +G L EA K+++ MP KP V+ G
Sbjct: 309 VGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVVESMPMKPNEVVIG 368
Query: 354 ALLGACCSHYN-TKLAELVMRNLLQLDVK 381
+LL AC +H N T+LAE +M+ L +L VK
Sbjct: 369 SLLAACRTHGNDTELAERMMKRLSELKVK 397
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 116/298 (38%), Gaps = 77/298 (25%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVR-------------------------------- 61
+DD +VF ++ R L ++ MING V+
Sbjct: 145 VDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAALAA 204
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + L +H V F ++ ++ S ID++ +CG V++A
Sbjct: 205 CANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQ------------- 251
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +M +R +VSWN++I +G E+L F + F ++ + A
Sbjct: 252 ---------VFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGA 302
Query: 182 FSARASVYDLEWGP----------HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES- 230
+A + V +E G + R+ H +D++ +G ++ LK +ES
Sbjct: 303 LTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKV----VESM 358
Query: 231 -----SIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLE 280
+ IG L G T+ A+ + +S + ++++L + ++ G E
Sbjct: 359 PMKPNEVVIGSLLAACRTHGNDTELAERMMKRLSELKVKGHSNYVILSNMYAADGQWE 416
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 37/246 (15%)
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE-WGPHLHS 199
VSW + I++L+R+G E F + G + + S A D E +G LH
Sbjct: 30 VSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCA---DCEPFGDSLHG 86
Query: 200 RVVHMEPSLD---VFVGSGLIDMYLKCGC--------NGIESSIQIG-KALVTMYAEGGS 247
+ LD V VG+ ++ MY K + +E + ++ Y G
Sbjct: 87 YACKL--GLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDGYMRSGR 144
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS--------- 298
A F+ M R++ISW +I+ F + G+ E+ +F +SG
Sbjct: 145 VDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEA-LAWFREMQVSGVKPDYVAVIAALA 203
Query: 299 -----GPVTKG--KHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
G ++ G H F F ++DL G + A+++ DEM K T V
Sbjct: 204 ACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEM-EKRTVV 262
Query: 351 IWGALL 356
W +++
Sbjct: 263 SWNSVI 268
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 147/336 (43%), Gaps = 63/336 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++K+ LH + K + + S M+ K G +D A +
Sbjct: 490 CAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLA--------------Y 535
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F F++MP +D V WN MI +++G + F ++ G S+ +
Sbjct: 536 QF--------FRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSAT 587
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A+ L +G LH VV D FV S LIDMY KCG + S+
Sbjct: 588 LSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSV--------- 638
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFF 287
F++M +N +SW +I+A+ G +P F
Sbjct: 639 -------------FDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTF 685
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEM 343
V ++S C H+G V +G +YF M + C +F CMVDL G +G L EA I M
Sbjct: 686 LV-IMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSM 744
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P P WG+LLGAC H N +LA+L ++L++LD
Sbjct: 745 PFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELD 780
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 127/316 (40%), Gaps = 74/316 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLIS-----TCLISSIFLQL------IDDDYRVFCDIGPRYL 49
+KACG L ++P+ + +H S I S ++L I D +F ++ R
Sbjct: 184 IKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDC 243
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
+N M+NG V+ C G ++ + LHGL
Sbjct: 244 ILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGL 303
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V + F SD ++A + I M+ KCG + A +F MP+
Sbjct: 304 VIRSGFESDPTVANTIITMYSKCGNLFDARK----------------------IFDIMPQ 341
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D V+WN +I+ ++GF E + F + G L S+ +A+ + L++ +
Sbjct: 342 TDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEV 401
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCG-----CNGIESS----IQIGKALVTMYAEGGST 248
HS +V DV++ S L+D+Y K G C + + + + A+++ Y G
Sbjct: 402 HSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLN 461
Query: 249 QKADLAFELMSRRNMI 264
+A F + + M+
Sbjct: 462 VEALNLFRWLIQEGMV 477
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 50/245 (20%)
Query: 43 DIGP-RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG 101
++ P +Y F Y GG+ N+ + +H L + F D I S I ++ G
Sbjct: 172 NVAPDKYTFPYVIKACGGL-----NNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNG 226
Query: 102 AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
+ A+ +F ++P RD + WN M++ ++G L
Sbjct: 227 YIHDAK----------------------YLFDELPVRDCILWNVMLNGYVKNGDFNSALG 264
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
TF E+ N +S+ + S A+ + G LH V+
Sbjct: 265 TFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIR------------------ 306
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
+G ES + ++TMY++ G+ A F++M + + ++W LI+ + Q G ++
Sbjct: 307 ----SGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDE 362
Query: 282 PRFFF 286
F
Sbjct: 363 AVALF 367
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 158/374 (42%), Gaps = 58/374 (15%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA--KSSIDM 96
+VF ++ R ++ +I G RC G++ A L F + D I + ID
Sbjct: 181 KVFDEMSVRSKVSWTAVIVGYARC---GDMSEARRL------FDEMEDRDIVAFNAMIDG 231
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLVSWNTMI 147
+VK G V A F M ++ W + +MF MPE+++ +WN MI
Sbjct: 232 YVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMI 291
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
++ + L F E+ + + A A + L+ G +H + +
Sbjct: 292 GGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLD 351
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
+G+ LIDMY KC G KA LAFE M+ R SW
Sbjct: 352 RSARIGTALIDMYAKC----------------------GEITKAKLAFEGMTERETASWN 389
Query: 268 VLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
LI+ F+ G ++ F + +LS C+H G V +G+ +F AM +F
Sbjct: 390 ALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAMERF 449
Query: 315 ---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
++ CMVDLLG +G L EA+ LI MP +I + L AC + AE V
Sbjct: 450 GIAPQVEHYGCMVDLLGRAGCLDEAENLIQTMPYDANGIILSSFLFACGYFNDVLRAERV 509
Query: 372 MRNLLQLDVKVFGS 385
++ ++++D V G+
Sbjct: 510 LKEVVKMDEDVAGN 523
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 14/178 (7%)
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
G+ L M LK NG+ + + ALV MY + G A F+ MS R+ +SW +I
Sbjct: 144 GTLLHGMVLK---NGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVG 200
Query: 273 FSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCM 323
+++ G + + R F F +++ G G V + F M + + M
Sbjct: 201 YARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSW-TSM 259
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
V +G + AK + D MP K W A++G C + + A + R + V+
Sbjct: 260 VSGYCGNGDVENAKLMFDLMPEK-NVFTWNAMIGGYCQNRRSHDALELFREMQTASVE 316
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 68/337 (20%), Positives = 129/337 (38%), Gaps = 59/337 (17%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+T+ ++ G + G + LHG+V K D +A + +DM+VK G + A
Sbjct: 126 YTFTALVKGCATRVATGEGTL---LHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKV 182
Query: 110 FLRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M S W I+ +F +M +RD+V++N MI + G
Sbjct: 183 FDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMG------ 236
Query: 161 CTFI--ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
C + EL+N + + + + S D+E + + P +VF + +I
Sbjct: 237 CVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFD----LMPEKNVFTWNAMIG 292
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
Y C ++++ + + T E N ++ + ++ A + G
Sbjct: 293 GY--CQNRRSHDALELFREMQTASVEP----------------NEVTVVCVLPAVADLGA 334
Query: 279 LEKPRFFFFF-------------VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVD 325
L+ R+ F +L+ + G +TK K F M + T + +++
Sbjct: 335 LDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTE-RETASWNALIN 393
Query: 326 LLGLSGLLGEAKKLIDEMPSK---PTCVIWGALLGAC 359
++G EA ++ M + P V +L AC
Sbjct: 394 GFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSAC 430
>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Glycine max]
Length = 1033
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 142/330 (43%), Gaps = 70/330 (21%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L+ K D +I + + + KC ++ E I+F
Sbjct: 579 QIHALILKHSVADDNAIENTLLAFYGKCEQMEDCE----------------------IIF 616
Query: 133 QKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
+M ER D VSWN MIS +G + + + G L AT SA ASV L
Sbjct: 617 SRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATL 676
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
E G +H+ + +V VGS L+DMY KCG K
Sbjct: 677 ERGMEVHACAIRACLEAEVVVGSALVDMYAKCG-------------------------KI 711
Query: 252 DLA---FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
D A FELM RN+ SW +IS +++ G K F FV +LS C
Sbjct: 712 DYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSAC 771
Query: 296 SHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SH G V +G +F +M + +F CMVDLLG +G + + ++ I MP P +I
Sbjct: 772 SHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALI 831
Query: 352 WGALLGACC--SHYNTKLAELVMRNLLQLD 379
W +LGACC + NT+L + L++L+
Sbjct: 832 WRTILGACCRANSRNTELGRRAAKMLIELE 861
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 46/200 (23%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
I + ++++ KC A+D A S +FQ MP +D VSWN++IS
Sbjct: 392 IGNALVNLYAKCNAIDNARS----------------------IFQLMPSKDTVSWNSIIS 429
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
L + E + F + +G S + S+ AS+ + G +H
Sbjct: 430 GLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIH---------- 479
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
G G +KC G++ + + AL+T+YAE ++ F LM + +SW
Sbjct: 480 ----GEG-----IKC---GLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNS 527
Query: 269 LISAF--SQAGVLEKPRFFF 286
I A S+A VL+ ++F
Sbjct: 528 FIGALATSEASVLQAIKYFL 547
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 30/178 (16%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT T+++ C V ++ + +H + ++ + + +DM+ KCG +DYA
Sbjct: 661 FTLATVLSA---CASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASR- 716
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F+ MP R++ SWN+MIS RHG G + L F ++ H
Sbjct: 717 ---------------------FFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQH 755
Query: 170 GFGLSSMLYATAFSARASVYDLEWG-PHLHS--RVVHMEPSLDVFVGSGLIDMYLKCG 224
G + + SA + V ++ G H S V + P ++ F S ++D+ + G
Sbjct: 756 GQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHF--SCMVDLLGRAG 811
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 125/305 (40%), Gaps = 53/305 (17%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNI----------KMALHLHGLVKKFYF 83
IDD RVF +I + ++N++I+ V C I + A L+ ++ F
Sbjct: 194 IDDARRVFEEIKMKTSASWNSIIS--VYCRRGDAISAFKLFSSMQREATELNCRPNEYTF 251
Query: 84 VSDESIAKSSID--------MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM-FQK 134
S ++A S +D M + + + ++ S F ++G+I M F++
Sbjct: 252 CSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFA-RYGLIDSAKMIFEQ 310
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
M +R+ V+ N ++ L R G E F E+ + +++ YA SA +L+ G
Sbjct: 311 MDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEINASSYAVLLSAFTEFSNLKEG 369
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+ VH + + L+D++ I IG ALV +YA+ + A
Sbjct: 370 KR-KGQEVHA-----YLIRNALVDVW-----------ILIGNALVNLYAKCNAIDNARSI 412
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPV 301
F+LM ++ +SW +IS E+ F +S LS C+ G +
Sbjct: 413 FQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWI 472
Query: 302 TKGKH 306
G+
Sbjct: 473 MLGQQ 477
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 20/161 (12%)
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
++L+ G+ S + LV ++ G+ A F+ M ++N++SW L+S ++Q G+
Sbjct: 61 LHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGM 120
Query: 279 LEKPRFFFFFV-------------SLLSGCSHSGP--VTKGKHYFTAMAKFTYTCYFVCM 323
++ F + S L C GP + G ++K Y V
Sbjct: 121 PDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLS 180
Query: 324 VDLLGL----SGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
L+ + S + +A+++ +E+ K T W +++ C
Sbjct: 181 NVLMSMYSHCSASIDDARRVFEEIKMK-TSASWNSIISVYC 220
>gi|302776814|ref|XP_002971551.1| hypothetical protein SELMODRAFT_61534 [Selaginella moellendorffii]
gi|300160683|gb|EFJ27300.1| hypothetical protein SELMODRAFT_61534 [Selaginella moellendorffii]
Length = 505
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 103/428 (24%), Positives = 178/428 (41%), Gaps = 107/428 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+ AC SLK L R +HA L+ + + FL++ + + R+F + +
Sbjct: 97 ITACCSLKDLARGRAVHAGLLVSGIQPDDFLRVALLNMYAKLGSLGEATRIFHSMPTDNV 156
Query: 50 FTYNTMIN--------------------GGVR------------CLCVGNIKMALHLHGL 77
+N MI GG R C+ + +H
Sbjct: 157 VAWNVMIAAFSQSDQPSLALEFYWKMLAGGTRPDFCTLISTLSAVSCLRRLSHGRAIHDS 216
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
++ + SD + + +DM+ KCG++D A ++F KMP
Sbjct: 217 IQAHGYCSDVILDTALVDMYGKCGSLDDAR----------------------MVFDKMPA 254
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+V+WN MI+ ++HG G + + E+ GF + +A + DL G +
Sbjct: 255 RDIVTWNAMIAAYSQHGQGDKAFELYAEMEPQGFKPELVTLVNLLTASCCLGDLSRGKAI 314
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE- 256
HSR++ + L + + +++MY KC GS +A LAF+
Sbjct: 315 HSRIIDDKLELTLVAENAIVNMYAKC----------------------GSLAQAKLAFDG 352
Query: 257 LMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVT 302
++ R++ISW +I+ ++ G E P F LL CSH G +
Sbjct: 353 MIHPRDVISWNAIIAGNAENGGTETSLQLAKDMVHDGVAPDATTFTCVLLC-CSHGGQLD 411
Query: 303 KGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+G+ YF +M + ++ ++DLLG +G L EA++L+ MP +P A LGA
Sbjct: 412 QGRSYFLSMVSDFQLSPSSAHYQSLIDLLGRAGRLEEAEELMSVMPYQPGVAGVRAYLGA 471
Query: 359 CCSHYNTK 366
C +H++ +
Sbjct: 472 CRTHFDEE 479
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 45/253 (17%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F + ++ S+N +IS R+G E L F + G YA +A S+
Sbjct: 44 LAVFSTIARKNTYSYNILISAAARNGLYREALDAFERMKREGIPRDKFTYADVITACCSL 103
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
DL G +H+ ++ D F+ L++MY K G G + I
Sbjct: 104 KDLARGRAVHAGLLVSGIQPDDFLRVALLNMYAKLGSLGEATRI---------------- 147
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF----------------VSLL 292
F M N+++W V+I+AFSQ+ ++P F +S L
Sbjct: 148 ------FHSMPTDNVVAWNVMIAAFSQS---DQPSLALEFYWKMLAGGTRPDFCTLISTL 198
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
S S ++ G+ ++ Y + +VD+ G G L +A+ + D+MP++
Sbjct: 199 SAVSCLRRLSHGRAIHDSIQAHGYCSDVILDTALVDMYGKCGSLDDARMVFDKMPAR-DI 257
Query: 350 VIWGALLGACCSH 362
V W A++ A H
Sbjct: 258 VTWNAMIAAYSQH 270
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/398 (20%), Positives = 155/398 (38%), Gaps = 71/398 (17%)
Query: 4 CGSLKSL-----PIARK---IHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTM 55
CGS+K IARK + LIS + ++ + +D R+ + PR FTY +
Sbjct: 37 CGSMKEALAVFSTIARKNTYSYNILISAAARNGLYREALDAFERMKREGIPRDKFTYADV 96
Query: 56 INGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115
I C + ++ +H + D+ + + ++M+ K G++ A
Sbjct: 97 ITA---CCSLKDLARGRAVHAGLLVSGIQPDDFLRVALLNMYAKLGSLGEATR------- 146
Query: 116 PSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
+F MP ++V+WN MI+ ++ L + ++ G
Sbjct: 147 ---------------IFHSMPTDNVVAWNVMIAAFSQSDQPSLALEFYWKMLAGGTRPDF 191
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+ SA + + L G +H + DV + + L+DMY KCG
Sbjct: 192 CTLISTLSAVSCLRRLSHGRAIHDSIQAHGYCSDVILDTALVDMYGKCG----------- 240
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK---------PRFF- 285
S A + F+ M R++++W +I+A+SQ G +K P+ F
Sbjct: 241 -----------SLDDARMVFDKMPARDIVTWNAMIAAYSQHGQGDKAFELYAEMEPQGFK 289
Query: 286 ---FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKL 339
V+LL+ G +++GK + + V +V++ G L +AK
Sbjct: 290 PELVTLVNLLTASCCLGDLSRGKAIHSRIIDDKLELTLVAENAIVNMYAKCGSLAQAKLA 349
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
D M + W A++ + T+ + + ++++
Sbjct: 350 FDGMIHPRDVISWNAIIAGNAENGGTETSLQLAKDMVH 387
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 17/149 (11%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK-------------P 282
ALV MY + GS ++A F ++R+N S+ +LISA ++ G+ + P
Sbjct: 28 NALVQMYGKCGSMKEALAVFSTIARKNTYSYNILISAAARNGLYREALDAFERMKREGIP 87
Query: 283 RFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKL 339
R F + +++ C + +G+ H ++ + V ++++ G LGEA ++
Sbjct: 88 RDKFTYADVITACCSLKDLARGRAVHAGLLVSGIQPDDFLRVALLNMYAKLGSLGEATRI 147
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLA 368
MP+ V W ++ A LA
Sbjct: 148 FHSMPTD-NVVAWNVMIAAFSQSDQPSLA 175
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 167/378 (44%), Gaps = 55/378 (14%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D ++F + R + + TM+ G R G++ A L + + VS ++
Sbjct: 176 MDKARKLFDRMPERNVMAWTTMVAGIARS---GSVDEARALFDGMPERNVVSWNAM---- 228
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWN 144
I + + +D A F++M + W I R +F KMP R++++W
Sbjct: 229 ISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWT 288
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
TM++ + L F + G + + + A A +++ L G +H +
Sbjct: 289 TMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKT 348
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
D F+ S L+++Y KCG I++ + + F+L +++I
Sbjct: 349 SFQFDTFIESTLMNLYAKCG------EIRLARKV----------------FDLSKEKDVI 386
Query: 265 SWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAM 311
SW +I+A++ GV +E + +V LLS CSHSG V +G F M
Sbjct: 387 SWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYM 446
Query: 312 AKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
K ++ C++DL +G LG+AK+LI + +P+ +W ALLG C SH N +
Sbjct: 447 VKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESI 506
Query: 368 AELVMRNLLQLDVKVFGS 385
+L RNLL+ + G+
Sbjct: 507 GDLAARNLLEAEPNNAGT 524
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGC----------NGIESSIQIGKALVTMYAEGGSTQ 249
R+ P DV + L+ Y + G ++ AL++ YA G
Sbjct: 56 RLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVD 115
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS---------LLSGCSHSGP 300
+A+ F+ M RN++SW ++ A++ AG + F + LL+ SG
Sbjct: 116 EAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALVRSGN 175
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL-GAC 359
+ K + F M + + MV + SG + EA+ L D MP + V W A++ G
Sbjct: 176 MDKARKLFDRMPERNVMAW-TTMVAGIARSGSVDEARALFDGMPER-NVVSWNAMISGYA 233
Query: 360 CSHYNTKLAELVMR 373
+H + +L M+
Sbjct: 234 RNHRIDEAHDLFMK 247
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 39/225 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + P+RD+VSW +++ R G ML+ ARA ++D
Sbjct: 57 LFDRTPDRDVVSWTALVAAYARQG---------------------MLH----DARA-LFD 90
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
P VV L + +G +D E ++ ++ Y G +
Sbjct: 91 R---PDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRD 147
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPV 301
A F+ M R+ SW +L++A ++G ++K R F + ++++G + SG V
Sbjct: 148 AWTLFDGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSV 207
Query: 302 TKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+ + F M + + M+ + + EA L +MP++
Sbjct: 208 DEARALFDGMPERNVVSWN-AMISGYARNHRIDEAHDLFMKMPTR 251
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 12/171 (7%)
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y + +Q V A G A F+ R+++SW L++A+++ G+L
Sbjct: 23 YDSAAAVDVSGHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGML 82
Query: 280 EKPRFFF----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL 329
R F + +LLSG + +G V + + F M + + M++
Sbjct: 83 HDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNT-MLEAYTS 141
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
+G + +A L D MP + W LL A N A + + + +V
Sbjct: 142 AGRVRDAWTLFDGMPVRDAGS-WNILLAALVRSGNMDKARKLFDRMPERNV 191
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 153/365 (41%), Gaps = 84/365 (23%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW-----------K 122
+HG V + F S+ + + + H KCG + A F + W
Sbjct: 129 VHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGD 188
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHG---------------------------- 154
+ R L F +MP+RDLVSWN MI++ T+HG
Sbjct: 189 LSVARKL--FDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYV 246
Query: 155 ---FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211
E L F E+ G + + SA A + DLE G +H++++ M
Sbjct: 247 LRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEM------- 299
Query: 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271
N + S +G ALV MYA+ G+ KA F L+ ++++SW +IS
Sbjct: 300 --------------NKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVIS 345
Query: 272 AFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC 318
+ G E+ F FV +L+ CSH+G V +G YF M K Y
Sbjct: 346 GLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLM-KNKYKI 404
Query: 319 YFV-----CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
C+VD+LG +GLL EA I M +P ++W +LLGAC H + +LA+
Sbjct: 405 EPTIRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANE 464
Query: 374 NLLQL 378
LL++
Sbjct: 465 QLLRM 469
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 9/167 (5%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L MF ++P+ D WNT I ++ + + ++ + + A +
Sbjct: 61 LQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKL 120
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALV 239
+ + G +H RV+ + +V V + L+ + KCG + + + AL+
Sbjct: 121 FWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALI 180
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
YA+ G A F+ M +R+++SW V+I+ +++ G +E R F
Sbjct: 181 AGYAQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLF 227
>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
Length = 614
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 160/368 (43%), Gaps = 63/368 (17%)
Query: 35 DDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSI 94
DD Y++F ++ R + ++N MI+G GL + V E +A
Sbjct: 9 DDAYQMFEEMQYRDVVSWNAMISGFAHA-------------GLFGRAMDVFRELVA---- 51
Query: 95 DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI-MFQKMPERDLVSWNTMISILTRH 153
++C D A + PS+ + I LL +F +M L+SWN M+++ T +
Sbjct: 52 ---LQCPKPDAGTMASIL---PSMGKARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNN 105
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
E + F+ + G ++ AT + V L G +H + + +
Sbjct: 106 EMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLE 165
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+ L+DMY CGC ++A F+ M R+++SW +ISA+
Sbjct: 166 NALMDMYANCGC----------------------LKEARDVFDSMGTRDVVSWTSIISAY 203
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-- 318
+ G + F FV++L+ CSH+G + GKHYF +M +
Sbjct: 204 GRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPK 263
Query: 319 --YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
++ CMVDLLG +G + EA I MP KP +WGALLGAC H N + L +LL
Sbjct: 264 LEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLL 323
Query: 377 QLDVKVFG 384
+L K G
Sbjct: 324 RLAPKQTG 331
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 168/368 (45%), Gaps = 63/368 (17%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
+N+M++ G+ C + ++ LH LV + + + + IDM+ K
Sbjct: 225 FNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAK 284
Query: 100 CGAVDYAESAFL---RMLNPSL-------FCWKFGIIRLL-IMFQKMPERDLVSWNTMIS 148
CG + A F R P +C K G + + +F +M +RDLV++N++I+
Sbjct: 285 CGDIGRAWEVFDALGRGRRPQSWNAMIDGYC-KLGHVDVARYLFDQMEDRDLVTFNSLIT 343
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
G E L F+++ H + + +A AS+ L G LH+ + +
Sbjct: 344 GYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEV 403
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
D+++G+ L+DM Y + G ++A L F+ MS R++ +W
Sbjct: 404 DIYLGTALLDM----------------------YLKCGRVEEASLVFQAMSVRDVHTWSA 441
Query: 269 LISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKF- 314
+I+ + G+ + +FF ++++L+ CSHS + +G+ YF M
Sbjct: 442 MIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLH 501
Query: 315 ---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
++ CM+DLLG SGLL EA L+ MP +P VIW ++L AC H + LA
Sbjct: 502 NIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNA 561
Query: 372 MRNLLQLD 379
+LL+L+
Sbjct: 562 AEHLLKLE 569
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 32/249 (12%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIR-LLIMFQKMPERD 139
++ I M+V+ G A AF + W K G++ + + P R+
Sbjct: 142 VSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARN 201
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
++SW +IS +R G E + F + + G + SA A + DL +G LH
Sbjct: 202 VISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHK 261
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI----------QIGKALVTMYAEGGSTQ 249
V + + LIDMY KCG G + Q A++ Y + G
Sbjct: 262 LVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVD 321
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCS 296
A F+ M R+++++ LI+ + G L + F VSLL+ C+
Sbjct: 322 VARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACA 381
Query: 297 HSGPVTKGK 305
G + +G+
Sbjct: 382 SLGALPQGR 390
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 170/361 (47%), Gaps = 67/361 (18%)
Query: 38 YRVFCDIGPRY-----LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKS 92
++VF + R+ +N +I G C G++K A+ L + K VS ++
Sbjct: 234 FKVFDESPERFDSGSSALLWNVLIKG---CCKAGSMKKAVKLFKAMPKKENVSWSTL--- 287
Query: 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR 152
ID K G +D R + +F +MPE+++VSW TM+ +R
Sbjct: 288 -IDGFAKNGDMD----------------------RAMELFDQMPEKNVVSWTTMVDGFSR 324
Query: 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
+G + L F ++ G ++ +A SA A + LE G +H + L +
Sbjct: 325 NGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEAL 384
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV---- 268
G+ L+DMY KCG IES+ ++ G + QK+ + +M + W +
Sbjct: 385 GTALVDMYAKCG--NIESASEVF---------GETEQKSIRTWTVM----IWGWAIHGHS 429
Query: 269 --LISAFSQ---AGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----- 318
I+ F Q AG+ KP F++LL+ C HSG V G ++F +M + Y
Sbjct: 430 EQAIACFKQMMFAGI--KPD-EVVFLALLTACMHSGQVDIGLNFFDSM-RLDYCIEPSMK 485
Query: 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
++ +VD+LG SG L EA + I+ MP P VIWGAL AC +H TK+A+ + LL+L
Sbjct: 486 HYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKL 545
Query: 379 D 379
+
Sbjct: 546 E 546
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 103/290 (35%), Gaps = 65/290 (22%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F ++L ++N +I LT + F + F + G + Y + A +
Sbjct: 133 LAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGL 192
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK-------------------------- 222
+ E G +H ++ LD FV L+DMY+K
Sbjct: 193 FSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALL 252
Query: 223 --------CGCNGIESSIQIGKA-----------LVTMYAEGGSTQKADLAFELMSRRNM 263
C ++ ++++ KA L+ +A+ G +A F+ M +N+
Sbjct: 253 WNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNV 312
Query: 264 ISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLSGCSHSGPVTKG---KHY 307
+SW ++ FS+ G EK F VS LS C+ G + G Y
Sbjct: 313 VSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKY 372
Query: 308 FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP----TCVIWG 353
+VD+ G + A ++ E K T +IWG
Sbjct: 373 IKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWG 422
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 164/374 (43%), Gaps = 68/374 (18%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS----- 93
RVF + R + N MI+ AL HG V++ + D ++S
Sbjct: 66 RVFMGMPRRDVVANNAMIS-------------ALSKHGYVEEARNLFDNMTERNSCSWNS 112
Query: 94 -IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI-----IRLLIMFQKM-----PERDLVS 142
I + K G ++ A F + W I + L+ Q++ R+ V+
Sbjct: 113 MITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVT 172
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WNTMIS + G + F ++ + + + + SA A + L+ G +H +
Sbjct: 173 WNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIR 232
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+DV +G+ LIDMY KCG +E++I + F +SR+N
Sbjct: 233 TKRLKIDVVLGNALIDMYCKCG--ALEAAIDV--------------------FHGLSRKN 270
Query: 263 MISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFT 309
+ W +I G E+ F FV +LSGCSHSG ++ G+ YF+
Sbjct: 271 IFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFS 330
Query: 310 AMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
M ++ CMVDLLG +G L EA +LI MP KP ++ G+LL AC H +T
Sbjct: 331 EMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDT 390
Query: 366 KLAELVMRNLLQLD 379
KL E V + LL+LD
Sbjct: 391 KLGEQVTQQLLELD 404
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 94/259 (36%), Gaps = 68/259 (26%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G ++ H + K F D + +D + K G + A+ F+
Sbjct: 20 CAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFM---------- 69
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
MP RD+V+ N MIS L++HG+ E F + +S + +
Sbjct: 70 ------------GMPRRDVVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSM 113
Query: 182 FSARASVYDLEWGPHLHSRVV-HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+ + D+ +R++ P DV + +ID Y K K LV
Sbjct: 114 ITCYCKLGDIN-----SARLMFDCNPVKDVVSWNAIIDGYCK------------SKQLVA 156
Query: 241 MYAEGGSTQKADLAFELM-SRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
A F LM S RN ++W +ISA+ Q G F
Sbjct: 157 ----------AQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 206
Query: 287 FFVSLLSGCSHSGPVTKGK 305
VSLLS C+H G + G+
Sbjct: 207 TMVSLLSACAHLGALDMGE 225
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G E + + L+ YA+ G + A F M RR++++ +ISA S+ G +E+ R F
Sbjct: 40 GFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLF 99
Query: 287 FFVSLLSGCSHSGPVT-KGKHYFTAMAKFTYTCYFV-------CMVDLLGLSGLLGEAKK 338
++ + CS + +T K A+ + C V ++D S L A++
Sbjct: 100 DNMTERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQE 159
Query: 339 LIDEMPSKPTCVIWGALLGA--CCSHYNTKLA 368
L M S V W ++ A C + T ++
Sbjct: 160 LFLLMGSARNSVTWNTMISAYVQCGEFGTAIS 191
>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
Length = 838
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 155/336 (46%), Gaps = 62/336 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C+ N++ + +H L + F + +++ + +DM++KC
Sbjct: 455 CACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKC--------------------- 493
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
F + + +F +MP++D+++W + S +G E++ F + + G ++
Sbjct: 494 -FSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKI 552
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ + + L+ LH+ V+ NG E++ IG +L+ +
Sbjct: 553 LTTISELGILQQAVCLHAFVIK----------------------NGFENNQFIGASLIEV 590
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------- 287
YA+ S + A+ F+ M+ +++++W +I+A+ G E+ F+
Sbjct: 591 YAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVT 650
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
F+S+LS CSHSG + +G + F M + ++ MVDLLG G L A +I+ M
Sbjct: 651 FISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNM 710
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P + IWGALLGAC H N K+ E+ +NL LD
Sbjct: 711 PMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLD 746
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 103/233 (44%), Gaps = 44/233 (18%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T+++ C + N K+ +HG VK+ + +A S + ++ K G++ A +
Sbjct: 346 TLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASN----- 400
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F++M ++D++SW+TM++ +G + L F E+ +
Sbjct: 401 -----------------LFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKP 443
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ + + A A + +LE G +H V+ ++ V + L+DMY+KC
Sbjct: 444 NWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKC---------- 493
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
S +KA F M ++++I+W VL S ++ G++ + + F
Sbjct: 494 ------------FSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVF 534
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/337 (19%), Positives = 127/337 (37%), Gaps = 69/337 (20%)
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
G+R L +G + +HG +KK D + + ID++ KCG ++ A F+
Sbjct: 253 AGLRKLLLGKV-----IHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFM------ 301
Query: 118 LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGFGLSSM 176
+ P+ D+V W ++IS + G L F + + +
Sbjct: 302 ----------------EYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPV 345
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ SA A + + + G +H V G+++ + +
Sbjct: 346 TLVSVASACAQLSNFKLGRSVHGFVKR----------------------KGLDNKLCLAN 383
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE----------KP 282
+L+ +Y + GS + A F MS +++ISW +++ ++ G VL+ KP
Sbjct: 384 SLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKP 443
Query: 283 RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKL 339
+ VS+L C+ + +G + + T ++D+ +A L
Sbjct: 444 N-WVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDL 502
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
+ MP K + W L + + V RN+L
Sbjct: 503 FNRMPKK-DVIAWAVLFSGYADNGMVHESMWVFRNML 538
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 99/252 (39%), Gaps = 48/252 (19%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS------SMLYATAFSA 184
+FQ+ P R + WN ++ G ETL F ++ N+ +S + + A +
Sbjct: 193 LFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQM-NNVSSVSIEERPDNYSVSIALKS 251
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A + L G +H + + D+FVGS LID+Y KCG Q+ A V ++ E
Sbjct: 252 CAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCG--------QMNDA-VKVFME 302
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVS 290
+ +++ W +IS + Q+G E FF VS
Sbjct: 303 -------------YPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVS 349
Query: 291 LLSGCSHSGPVTKGK--HYFTAMAKFTYT-CYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+ S C+ G+ H F C ++ L G +G + A L EM K
Sbjct: 350 VASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDK- 408
Query: 348 TCVIWGALLGAC 359
+ W ++ AC
Sbjct: 409 DIISWSTMV-AC 419
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 148/336 (44%), Gaps = 63/336 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + LHG+V K + S I+M+ K G +D A
Sbjct: 251 CAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ------------- 297
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F++MP R LVSWN+M+ I +G+ + + F + G AT
Sbjct: 298 ---------LFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQ---ATM 345
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL-KCGCNGIESSIQIGKALVT 240
+ + D G S I Y+ +CG N + I I AL+
Sbjct: 346 VALLRACTDTGLGRQAES-----------------IHAYIHRCGFN---ADIIIATALLN 385
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFS-QAGVLEKPRFFFF------------ 287
+YA+ G ++ FE + R+ I+W +++ ++ A E + F
Sbjct: 386 LYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 445
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
F LLS CSHSG V +GK YF M++ ++ CMVDLLG SG L +A +LI M
Sbjct: 446 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 505
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P +P+ +WGALLGAC + N +L + V LL LD
Sbjct: 506 PMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 541
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 112/274 (40%), Gaps = 44/274 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F +MP RDLVSWN+++S L+ G+ L F + G + + + SA A +
Sbjct: 196 LFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMG 255
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L+ G LH VV + G+ ++ +L+ MY + G
Sbjct: 256 ALDEGKSLHGVVVKL----------------------GMSGKAKVVNSLINMYGKLGFLD 293
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF-------------VSLLSGCS 296
A FE M R+++SW ++ + G EK F V+LL C+
Sbjct: 294 AASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACT 353
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE---AKKLIDEMPSKPTCVIWG 353
+G + + + + + + LL L LG ++ + +E+ + T + W
Sbjct: 354 DTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDT-IAWT 412
Query: 354 ALLGA----CCSHYNTKLAELVMRNLLQLDVKVF 383
A+L C KL +L+++ +++D F
Sbjct: 413 AMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTF 446
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-------------- 279
IG LV+MY + G + A F+ M R+++SW L+S S G L
Sbjct: 176 IGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTES 235
Query: 280 -EKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGE 335
+P S++S C+ G + +GK + K + ++++ G G L
Sbjct: 236 GRQPNEVTLL-SVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDA 294
Query: 336 AKKLIDEMPSKPTCVIWGALL 356
A +L +EMP + + V W +++
Sbjct: 295 ASQLFEEMPVR-SLVSWNSMV 314
>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 822
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 157/349 (44%), Gaps = 64/349 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT ++++NG C G + LHGLV K F D ++ + ID++ KC +D A
Sbjct: 349 FTLSSILNGCAIGKCSG---LGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTA--- 402
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ +F ++ +++VSWNT+I G G + L F E +
Sbjct: 403 -------------------VKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRN 443
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
++ + +++A A AS+ +E G +H + + V V + LIDMY KC
Sbjct: 444 QVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKC------ 497
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF--- 285
G + A F M ++ SW LIS +S G+ + R F
Sbjct: 498 ----------------GDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIM 541
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAM--AKFTYTC--YFVCMVDLLGLSGL 332
F+ +LSGCS++G + +G+ F +M C ++ CMV L G SG
Sbjct: 542 KGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQ 601
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
L +A LI+ +P +P+ +IW A+L A + YN + A +L+++ K
Sbjct: 602 LDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPK 650
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 108/299 (36%), Gaps = 61/299 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH + K + S+ + + I+ + CG+VD A S F + C
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVF-----EGILC------------- 209
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+D+V W ++S +G ++L + GF ++ + TA A + +
Sbjct: 210 ----KDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHF 265
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
+H +++ LD VG GL+ +Y + G A
Sbjct: 266 AKSVHGQILKTCYELDPRVGVGLLQLYTQL----------------------GDMSDAFK 303
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-----FV--------SLLSGCSHSGP 300
F M + +++ W +I+ F Q G K F FV S+L+GC+
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKC 363
Query: 301 VTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G+ H F Y ++D+ + A KL E+ SK V W ++
Sbjct: 364 SGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSK-NVVSWNTVI 421
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 106/263 (40%), Gaps = 46/263 (17%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
L +F +MPER+ VS+ T LT+ + + + L G L+ ++ + S+
Sbjct: 104 LNLFDEMPERNNVSYVT----LTQGYACQDPVGLYSRLHREGHELNPHVFTSFLKLFVSL 159
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG---------KALV 239
E LHS +V + + FVG+ LI+ Y CG S+ G +V
Sbjct: 160 DKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIV 219
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299
+ Y E G + + +L+SR M +M P + F +L
Sbjct: 220 SCYVENGCFED---SLQLLSRMGMDGFM--------------PNNYTFDTAL------KA 256
Query: 300 PVTKGKHYF--TAMAKFTYTCYF------VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
+ G +F + + TCY V ++ L G + +A K+ +EMP K V
Sbjct: 257 SIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMP-KNDVVP 315
Query: 352 WGALLGACCSH-YNTKLAELVMR 373
W ++ C + + K ++ +R
Sbjct: 316 WSFMIARFCQNGFCNKAVDIFIR 338
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 162/356 (45%), Gaps = 64/356 (17%)
Query: 50 FTYNTMINGGVRCLC-VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
FTY ++ V C V ++ +H + + + + + + +DM+ + G V YA +
Sbjct: 171 FTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASA 230
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE--L 166
+F +MP +++VSW+ MI+ ++G +E L F E L
Sbjct: 231 ----------------------VFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMML 268
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
H +S+ + A A+ LE G +H+ ++
Sbjct: 269 NTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILR----------------------R 306
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G++S + + AL+TMYA G + L F+ M +++++ W LIS++ G K F
Sbjct: 307 GLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIF 366
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGL 329
F+S+L CSH+G V +GK F +M K ++ CMVDLLG
Sbjct: 367 EEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGR 426
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ L EA K+I+++ +P +WG+LLGAC H + +LAE + L +L+ G+
Sbjct: 427 ANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGN 482
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 118/437 (27%), Positives = 184/437 (42%), Gaps = 107/437 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-------LIDDDYR----VFCDIGPRYL 49
+KAC L +IHA LI + +S IF+Q ++D D +F I +
Sbjct: 70 LKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDV 129
Query: 50 FTYNTMING-----------------GVR------------CLCVGNIKMALHLHGLVKK 80
++ ++I+G VR C + +K+ +HGL +
Sbjct: 130 VSWTSIISGLSKLGFEKEALSKFLSMNVRPNSTTLVTALSACSSLRCLKLGKAIHGLRMR 189
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
+ + + +D +V+C + AE+ +F+KMP+RD+
Sbjct: 190 TLNEENVILENALLDFYVRCAYLRSAEN----------------------LFEKMPKRDV 227
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHS 199
VSW TMI + G E + F + + G + + SA +S+ L G +HS
Sbjct: 228 VSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHS 287
Query: 200 RV-VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ + +D VG+ LI+MY+KC G+ + A L F+ +
Sbjct: 288 YINSRHDVIIDGNVGNALINMYVKC----------------------GNMEMAILIFKAI 325
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTKG 304
++++SW +IS + G L K F F F+ LLS CSH G + +G
Sbjct: 326 EHKDIVSWSTIISGLAMNG-LGKQAFVLFSLMLVHGVSPDDITFLGLLSACSHGGLINQG 384
Query: 305 KHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
F AM K Y ++ CMVD+ G +GLL EA+ I EMP + +WGALL AC
Sbjct: 385 MMVFEAM-KDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHAC 443
Query: 360 CSHYNTKLAELVMRNLL 376
H N K E V LL
Sbjct: 444 QLHGNEKKYEKVREWLL 460
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 158/399 (39%), Gaps = 96/399 (24%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLC---------------------------------V 65
+VF +I R L ++N+MI G + C +
Sbjct: 172 KVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGEL 231
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G++++ + G V + + I + I M+ KCG + A
Sbjct: 232 GDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARR----------------- 274
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+F M RD+++WN +IS ++G E + F + + + SA
Sbjct: 275 -----IFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSAC 329
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A++ L+ G + D+FV + LIDMY KC
Sbjct: 330 ATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKC---------------------- 367
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------FFVS 290
GS A F+ M ++N SW +ISA + G ++ F FV
Sbjct: 368 GSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVG 427
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
LLS C H+G V +G F M+ ++ CMVDLL +G L EA LI++MP K
Sbjct: 428 LLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEK 487
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
P V GALLGAC S N + E V+R +L++D G+
Sbjct: 488 PDKVTLGALLGACRSKKNVDIGERVIRMILEVDPSNSGN 526
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 131/324 (40%), Gaps = 62/324 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + A H LV K SD S I M+ +CG V +A
Sbjct: 126 CANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARK------------- 172
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYAT 180
+F ++P RDLVSWN+MI+ + G E + F E+ GF M +
Sbjct: 173 ---------VFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVS 223
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A + DLE G + VV +L+ ++GS LI MY KCG G I
Sbjct: 224 VLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRI-------- 275
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
F+ M+ R++I+W +IS ++Q G+ ++ F
Sbjct: 276 --------------FDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKIT 321
Query: 288 FVSLLSGCSHSGPVTKGKH--YFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMP 344
++LS C+ G + GK + + F + + ++D+ G L A+++ EMP
Sbjct: 322 LTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMP 381
Query: 345 SKPTCVIWGALLGACCSHYNTKLA 368
K W A++ A SH K A
Sbjct: 382 QKNEAS-WNAMISALASHGKAKEA 404
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 130/269 (48%), Gaps = 40/269 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPERDL+SW MI+ + GF E L F E+ G + A +A ++
Sbjct: 105 LFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGA 164
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +G +H VV + +V V + LID+Y +CGC +E + Q+
Sbjct: 165 LSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGC--VEFARQV---------------- 206
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
F+ M +R ++SW +I F+ G + +F F L+ C+H
Sbjct: 207 ----FDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACNH 262
Query: 298 SGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G V +G YF +M + ++ C+VDL +G L +A K++ MP KP V+ G
Sbjct: 263 VGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIG 322
Query: 354 ALLGACCSH-YNTKLAELVMRNLLQLDVK 381
+LL AC + NT LAE VM++L L+VK
Sbjct: 323 SLLAACRTQGNNTVLAERVMKHLSDLNVK 351
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 77/298 (25%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVR-------------------------------- 61
+DD ++F ++ R L ++ MING V+
Sbjct: 99 VDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAA 158
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + L +H V F ++ ++ S ID++ +CG V++A
Sbjct: 159 CTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQ------------- 205
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM +R +VSWN++I +G E+L F ++ GF +++ + A
Sbjct: 206 ---------VFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGA 256
Query: 182 FSARASVYDLEWG----------PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES- 230
+A V +E G + R+ H +D++ +G ++ LK ++S
Sbjct: 257 LAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKV----VQSM 312
Query: 231 -----SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS---WMVLISAFSQAGVLE 280
+ IG L +G +T A+ + +S N+ S +++L + ++ G E
Sbjct: 313 PMKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSHSNYVILSNMYAADGKWE 370
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
+ + +G A++ MY++ G +KA L F+ M +N ++W +I + + G ++ F
Sbjct: 49 RAHVMVGTAILGMYSKRGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLF 106
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 159/361 (44%), Gaps = 52/361 (14%)
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
LF T+++ C +G ++ +HG S+ I + ID + KCG D + S
Sbjct: 145 LFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFS 204
Query: 109 AFLRMLNPSLFCWKFGII------RLLI---MFQKMPERDLVSWNTMISILTRHGFGFET 159
F RM + W + RL +F +M E++ VSW +I+ ++G G E
Sbjct: 205 IFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEA 264
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH---MEPSLDVFVGSGL 216
L F ++ G S+ +A+ SA A + + G +H ++ ++ ++F+ + L
Sbjct: 265 LHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNAL 324
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
IDMY KCG + A F+ M ++++SW LI+ F+Q
Sbjct: 325 IDMYCKCG----------------------QMRSATTLFKGMHEKDIVSWNSLITGFAQN 362
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----Y 319
G E+ F F+ LLS C H+G V++G +M K C +
Sbjct: 363 GHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDH 422
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV-IWGALLGACCSHYNTKLAELVMRNLLQL 378
+ M+DLLG + L EA LI P V +WGALLGAC H N LA L QL
Sbjct: 423 YAIMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQL 482
Query: 379 D 379
+
Sbjct: 483 E 483
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/372 (22%), Positives = 155/372 (41%), Gaps = 49/372 (13%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
Y+++I+ +C+ ++K+ LH K + +A ID + KC ++ A F
Sbjct: 17 YSSLIS---KCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFH 73
Query: 112 RMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+ + W I + +MP+ +LVS+N++IS L HGF E+L
Sbjct: 74 VLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNV 133
Query: 163 FIELWNHGFGLSSMLY-----ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
F + S++L+ + + AS+ E +H + + + ++ +G+ LI
Sbjct: 134 FKTMLKQ---CSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALI 190
Query: 218 DMYLKCGCNGI---------ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
D Y KCG I E + ++V YA+ + A F M +N +SW
Sbjct: 191 DAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTA 250
Query: 269 LISAFSQAGVLEK-------------PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315
LI+ F+Q G ++ P F F S+LS C+ + +GK + + T
Sbjct: 251 LIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRST 310
Query: 316 YTCYFV------CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
YF ++D+ G + A L M K V W +L+ + + + +
Sbjct: 311 CIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDI-VSWNSLITGFAQNGHGEESL 369
Query: 370 LVMRNLLQLDVK 381
V +++ D++
Sbjct: 370 AVFERMIEADIR 381
>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03380, mitochondrial; Flags: Precursor
gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 62/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + N+++ +HGL K + D ++A + + M+ KC A+
Sbjct: 353 CGLIENLELGRSVHGLSIKV-GIWDTNVANALVHMYAKCYQNRDAK-------------- 397
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+ E+D+V+WN++IS +++G E L F + + + + A+
Sbjct: 398 --------YVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASL 449
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
FSA AS+ L G LH+ V + F+ S SS+ +G AL+
Sbjct: 450 FSACASLGSLAVGSSLHAYSVKLG-----FLAS---------------SSVHVGTALLDF 489
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL--------------EKPRFFFF 287
YA+ G Q A L F+ + +N I+W +I + + G +KP F
Sbjct: 490 YAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTF 549
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAK---FT-YTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
S+LS C H+G V +GK YF++M K FT T ++ CMVD+L +G L +A +I++M
Sbjct: 550 -TSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKM 608
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P +P +GA L C H L E+V++ +L L
Sbjct: 609 PIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDL 643
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 103/243 (42%), Gaps = 40/243 (16%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F ++PE D W M+ + E + + L HGF ++++ A A +
Sbjct: 97 LVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQ 156
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
DL+ G +H ++V + PS D V +GL+DMY KC G +
Sbjct: 157 DLDNGKKIHCQLVKV-PSFDNVVLTGLLDMYAKC----------------------GEIK 193
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
A F ++ RN++ W +I+ + + + E+ F + +L+ C+
Sbjct: 194 SAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACT 253
Query: 297 HSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ +GK + + K +C ++D+ G + A+++ +E S V+W
Sbjct: 254 KLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEH-SHVDLVMWT 312
Query: 354 ALL 356
A++
Sbjct: 313 AMI 315
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 73/223 (32%), Gaps = 57/223 (25%)
Query: 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNT 145
D + +DM+ KCG + A +F + R++V W +
Sbjct: 175 DNVVLTGLLDMYAKCGEIKSAHK----------------------VFNDITLRNVVCWTS 212
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
MI+ ++ E L F + + + Y T A + L G H +V
Sbjct: 213 MIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSG 272
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
L + + L+DMY+KC G A F S +++
Sbjct: 273 IELSSCLVTSLLDMYVKC----------------------GDISNARRVFNEHSHVDLVM 310
Query: 266 WMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
W +I ++ G + + F S+LSGC
Sbjct: 311 WTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC 353
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 118/437 (27%), Positives = 183/437 (41%), Gaps = 107/437 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-------LIDDDYR----VFCDIGPRYL 49
+KAC L +IHA LI + +S IF+Q ++D D +F I +
Sbjct: 25 LKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDV 84
Query: 50 FTYNTMING-----------------GVR------------CLCVGNIKMALHLHGLVKK 80
++ ++I+G VR C + +K+ +HGL +
Sbjct: 85 VSWTSIISGLSKLGFEKEALSKFLSMNVRPNSTTLVTALSTCSSLRCLKLGKAIHGLRMR 144
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
+ + + +D +V+C + AE+ +F+KMP+RD+
Sbjct: 145 TLNEENVILENALLDFYVRCAYLRSAEN----------------------LFEKMPKRDV 182
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHS 199
VSW TMI + G E + F + + G + + SA +S+ L G +HS
Sbjct: 183 VSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHS 242
Query: 200 RV-VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ + +D VG+ LI+MY+KC G+ + A L F+
Sbjct: 243 YINSRHDVIIDGNVGNALINMYVKC----------------------GNMEMAILIFKAT 280
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVTKG 304
++++SW +IS + G L K F F F+ LLS CSH G + +G
Sbjct: 281 EHKDIVSWSTIISGLAMNG-LGKQAFVLFSLMLVHGISPDDVTFLGLLSACSHGGLINQG 339
Query: 305 KHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
F AM K Y ++ CMVD+ G +GLL EA+ I EMP + +WGALL AC
Sbjct: 340 MMVFEAM-KDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHAC 398
Query: 360 CSHYNTKLAELVMRNLL 376
H N K E V LL
Sbjct: 399 QLHGNEKKYEKVREWLL 415
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 187/448 (41%), Gaps = 97/448 (21%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIF-----------LQLIDDDYRVFCDIGPRYLFTY 52
C + + + R+I+ Q++ S +F L LI D R F ++ R +
Sbjct: 148 CSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMC 207
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVS---------DESIAKSSIDMH------ 97
NTMI G +RC G I+ + L +K+ +S + + ++DM
Sbjct: 208 NTMITGLMRC---GMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLA 264
Query: 98 -------------VKCGAV----------------DYAESAFLRMLNPSLFCWKFGIIRL 128
CG++ D+ ++ F+ ++ I
Sbjct: 265 GFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSA 324
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F++MP+++++SW M+ ++GF E + F E+ +G + S+ A++
Sbjct: 325 ETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANL 384
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
LE G H R + SGLI S I + AL+T+Y + GST
Sbjct: 385 ASLEEGAQFHCRALV----------SGLI------------SFITVSNALITLYGKCGST 422
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
+ + F M+ R+ +SW L++ ++Q G + F F+ +LS C
Sbjct: 423 ENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSAC 482
Query: 296 SHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
S +G V KG YF +M K + C++DLLG +G L EA+ I+ MP P V
Sbjct: 483 SRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVG 542
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLD 379
W LL +C H + ++ + +L+ L+
Sbjct: 543 WATLLSSCRVHGDMEIGKWAADSLIALE 570
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 142/334 (42%), Gaps = 53/334 (15%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T++TM+ + C + + ++G + KF F SD + +DM+ K G + A+ F
Sbjct: 140 TFSTML---ILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYF 196
Query: 111 LRMLNPSLFCWKFGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETLC 161
M ++ I L+ +F + ERD +SW MI+ L ++G E L
Sbjct: 197 DEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALD 256
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F E+ GF + + + +A S+ L G +H+ V+ + +VFVGS L+DMY
Sbjct: 257 MFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYS 316
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
KC S + A+ F+ M ++N+ISW ++ + Q G E+
Sbjct: 317 KC----------------------RSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEE 354
Query: 282 PRFFFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV----CMV 324
FF + S++S C++ + +G F A + F+ ++
Sbjct: 355 AVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALI 413
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
L G G + +L EM + V W ALL
Sbjct: 414 TLYGKCGSTENSHRLFTEMNIRDE-VSWTALLAG 446
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 141/341 (41%), Gaps = 41/341 (12%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C N A LH L+ K + ++ + I + K G + YA F + P+LF W
Sbjct: 15 CCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSW 74
Query: 122 --------KFGII-RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF-IELWNHGF 171
K G++ ++ +F MP RD VSWN IS +G + + + + L +
Sbjct: 75 NTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAM 134
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC------ 225
L+ + ++T + ++ G ++ +++ DVFVGS L+DMY K G
Sbjct: 135 NLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKR 194
Query: 226 ---NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
E ++ + ++T G +++ F + R+ ISW ++I+ Q G LE+
Sbjct: 195 YFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNG-LERE 253
Query: 283 RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKL--- 339
F L+G AM +FT+ LL LGE K++
Sbjct: 254 ALDMFREMRLAG--------------FAMDQFTFGSVLTACGSLLA----LGEGKQIHAY 295
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
+ K + AL+ + K AE V + + Q +V
Sbjct: 296 VIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNV 336
>gi|255560477|ref|XP_002521253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539521|gb|EEF41109.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 484
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 151/344 (43%), Gaps = 63/344 (18%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TMIN C G + +HG + F+ + + +DM+ KCG ++ A+
Sbjct: 13 TMINLLPSCSQSGALSNGKCIHGYAIRKMFLPHLVLETALVDMYGKCGELELAKR----- 67
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F ++ E++LVSWNTMI+ ++G E L F LWN
Sbjct: 68 -----------------VFSQIDEKNLVSWNTMIAAYVQNGLNMEALELFNCLWNEPPKP 110
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
++ A+ A A + + +HS ++ +E S + + ++ MY KC
Sbjct: 111 DAVTIASILPAYAELASVSECKQIHSYIIKIELSSHTIISNAIVYMYAKC---------- 160
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
G + A F+ M +N++SW +I A+ G F
Sbjct: 161 ------------GDLKTARRIFDGMLCKNVVSWNTMIMAYGIHGFGTMSIQLFSEMRENG 208
Query: 287 ------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGE 335
FVSLLS CS +G V +G +F +M K Y +F CMVDLLG +G L
Sbjct: 209 IKPNESTFVSLLSSCSITGLVDEGWEFFNSM-KSDYNIDHGIEHFGCMVDLLGRTGNLDA 267
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A + I+E+P PT IWG+LL A + N LAEL +++ L+
Sbjct: 268 AMQFIEELPLVPTARIWGSLLTASRNKNNIALAELAAKHIFSLE 311
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 175/396 (44%), Gaps = 42/396 (10%)
Query: 16 IHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYL---FTYNTMINGGVRCLCVGNIKMAL 72
IH I C + + Q D +F ++ YL FT +I G C +G ++
Sbjct: 82 IHWNTIIKCYVEN---QFSHDGIVLFHELVHEYLPDNFTLPCVIKG---CARLGVVQEGK 135
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI-- 130
+HGL K F SD + S ++M+ KCG +D A F M++ + W I L+
Sbjct: 136 QIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSW 195
Query: 131 ------------------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+F +MP DLV+WN MI+ +G + + F + G
Sbjct: 196 NAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR 255
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
S + SA + + L G +HS + LD +G+ LI+MY KCGC IES++
Sbjct: 256 PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGC--IESAL 313
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
+ +A+ + L M+ + L + G+ KP F+ +L
Sbjct: 314 TVFRAIQKKKVGHWTAIIVGLGIHGMANHA----LALFLEMCKTGL--KPN-AIIFIGVL 366
Query: 293 SGCSHSGPVTKGKHYFTAMA---KFTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
+ C+H+G V G+ YF M K T ++ C+VD+L +G L EAK I+ MP P
Sbjct: 367 NACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPN 426
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
VIW +LLG +H + E + ++++ + G
Sbjct: 427 KVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIG 462
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++ R L+ WNT+I + F + + F EL H + + A +
Sbjct: 72 IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELV-HEYLPDNFTLPCVIKGCARLGV 130
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG--------------------CNGIES 230
++ G +H + + DVFV L++MY KCG + I+
Sbjct: 131 VQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG 190
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFFFFFV 289
++ A++ Y + G A F M ++++W ++I+ + G ++ + FF +
Sbjct: 191 NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMML 250
Query: 290 SLLSGCSHSGPVT 302
L S SH+ V+
Sbjct: 251 KLGSRPSHATLVS 263
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 103/409 (25%), Positives = 175/409 (42%), Gaps = 58/409 (14%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRC 62
AC +P+ ++ L+ S ID ++F + R + + TM+ G R
Sbjct: 148 ACTLFNGMPVRDAGSWNILLAALVRS---GNIDKARKLFDRMPERNVMAWTTMVAGIARS 204
Query: 63 LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
G++ A L + + VS ++ I + + +D A F++M + W
Sbjct: 205 ---GSVNEARALFDGMPERNVVSWNAM----ISGYARNHMIDEAHDLFMKMPTRDIASWN 257
Query: 123 FGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
I R +F KMP R++V+W TM++ + L F + G
Sbjct: 258 IMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRP 317
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ + + A A +++ L G +H + D F+ S L+++Y KCG I
Sbjct: 318 NQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCG------EII 371
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------- 285
+ + + F L +++ISW +I+A++ GV LE +
Sbjct: 372 LARKV----------------FNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENG 415
Query: 286 -----FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEA 336
+V LLS CSHSG V +G F M K ++ C++DL +G LG+A
Sbjct: 416 YKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDA 475
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
K+LI + +P+ +W ALLG C SH N + +L RNLL+ + G+
Sbjct: 476 KRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGT 524
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 28/197 (14%)
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGI-------------ESSIQIGKALVTMYAEGG 246
R+ P DV + L+ Y C G+ ++ AL++ YA G
Sbjct: 56 RLFDRTPDRDVVSWTALVAAY---ACQGMLHDARALFDRPDARRNVVTWTALLSGYARAG 112
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS---------LLSGCSH 297
+A+ F M RN++SW ++ A++ +G + F + LL+
Sbjct: 113 RVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVR 172
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL- 356
SG + K + F M + + MV + SG + EA+ L D MP + V W A++
Sbjct: 173 SGNIDKARKLFDRMPERNVMAW-TTMVAGIARSGSVNEARALFDGMPER-NVVSWNAMIS 230
Query: 357 GACCSHYNTKLAELVMR 373
G +H + +L M+
Sbjct: 231 GYARNHMIDEAHDLFMK 247
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/259 (19%), Positives = 102/259 (39%), Gaps = 40/259 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + P+RD+VSW +++ + ML+ ARA ++D
Sbjct: 57 LFDRTPDRDVVSWTALVA---------------------AYACQGMLH----DARA-LFD 90
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
P VV L + +G +D E ++ ++ Y G
Sbjct: 91 R---PDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGD 147
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPV 301
A F M R+ SW +L++A ++G ++K R F + ++++G + SG V
Sbjct: 148 ACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSV 207
Query: 302 TKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+ + F M + + M+ + ++ EA L +MP++ W ++
Sbjct: 208 NEARALFDGMPERNVVSWN-AMISGYARNHMIDEAHDLFMKMPTRDIAS-WNIMITGFIQ 265
Query: 362 HYNTKLAELVMRNLLQLDV 380
+ N + A+ + + + +V
Sbjct: 266 NKNLERAQELFDKMPRRNV 284
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 12/171 (7%)
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y + + +Q V A G A F+ R+++SW L++A++ G+L
Sbjct: 23 YDSAAAVDVSNHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGML 82
Query: 280 EKPRFFF----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL 329
R F + +LLSG + +G V + + F M + + M++
Sbjct: 83 HDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNT-MLEAYTS 141
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
SG +G+A L + MP + W LL A N A + + + +V
Sbjct: 142 SGRVGDACTLFNGMPVRDAGS-WNILLAALVRSGNIDKARKLFDRMPERNV 191
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 106/443 (23%), Positives = 179/443 (40%), Gaps = 95/443 (21%)
Query: 10 LPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYLFTYNTMI-- 56
LP RKIHA++++ S + + LI+ + VF + R + ++N MI
Sbjct: 223 LPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGC 282
Query: 57 ---NGGVR---------------------------CLCVGNIKMALHLHGLVKKFYFVSD 86
NG C V + +H + + S+
Sbjct: 283 YVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSE 342
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI------------IRLLIMFQK 134
++A + ++M+ KCG+++ A F M N W I + +F +
Sbjct: 343 VAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLEW 193
+ RD + WN MI+ ++G + F E+ G ++ + A AS+ L
Sbjct: 403 LGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
LH+++ E +ES++ + L+ MYA GS ++A+
Sbjct: 463 VKALHAQISESE----------------------LESNVVVTNTLINMYARCGSLEEAER 500
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F + ++SW +++AFSQ G + F + S+L C+H G
Sbjct: 501 LFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGS 560
Query: 301 VTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ +G YFT MA+ +F MVDLLG SG L +AK+L++ MP +P V W L
Sbjct: 561 LEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFL 620
Query: 357 GACCSHYNTKLAELVMRNLLQLD 379
AC H +L E + +LD
Sbjct: 621 TACRIHGKLELGEAAAERVYELD 643
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 61/311 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G++ LH ++ F D + + I M+ KC ++ A S F M W
Sbjct: 17 CSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM------DW 70
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ +R++VSWN MI+ ++G E L + + G G + + +
Sbjct: 71 R--------------QRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSV 116
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A +S L G +H+RV + +G++S + ALVTM
Sbjct: 117 LGACSS---LAQGREIHNRVFY----------------------SGLDSFQSLANALVTM 151
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFV 289
YA GS A F+ + R+ SW +I A SQ+G F ++
Sbjct: 152 YARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYI 211
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLG---EAKKLIDEMPSK 346
+++SG S + +G+ + + V L+ + G G EA+++ D+M K
Sbjct: 212 NVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMK-K 270
Query: 347 PTCVIWGALLG 357
V W ++G
Sbjct: 271 RDMVSWNVMIG 281
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 136/277 (49%), Gaps = 41/277 (14%)
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
R +F +MPE+++VSW TMI+ +++G + L F + G + + +A A
Sbjct: 257 RARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACT 316
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ L+ G +H+ YL NG + + IG ALV MYA+ G
Sbjct: 317 KIGALQVGERIHN--------------------YL--SSNGFQLNRGIGTALVDMYAKCG 354
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
+ + A F +++++W V+I ++ G ++ F F+++L+
Sbjct: 355 NIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILT 414
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
CSHSG V +G ++F +M + Y+ ++ +VDLLG +G L EA I MP P
Sbjct: 415 ACSHSGNVDQGLNFFESM-RLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPD 473
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
VIWGAL AC +H N ++AEL LLQL+ K GS
Sbjct: 474 FVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGS 510
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI-----ESSIQIGKA--- 237
A++ D+ G LH V+ + D FV L+DMY+K G G + S Q KA
Sbjct: 149 AALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESI 208
Query: 238 -----LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----- 287
L+ + G KA FE M RN SW LI+ F + G L++ R F
Sbjct: 209 LLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEK 268
Query: 288 ----FVSLLSGCSHSGPVTKGKHYFTAM 311
+ ++++G S +G K F M
Sbjct: 269 NVVSWTTMINGFSQNGDHEKALSMFWRM 296
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 150/335 (44%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + +H V + +D SI + ++ +CG A S+F
Sbjct: 456 CAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSF----------- 504
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ + ++ ++WN +IS + G E L F+++ G + + ++
Sbjct: 505 -----------EAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSS 553
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ D++ G +H+RV+ G S +I AL+++
Sbjct: 554 ISASANLADIKQGKQIHARVIK----------------------TGYTSETEISNALISL 591
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFF 288
Y + GS + A + F M++RN +SW +I+ SQ G LE F F
Sbjct: 592 YGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTF 651
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
V +L+ CSH G V +G YF +M+ ++ C+VD+LG +G L AK+ ++EMP
Sbjct: 652 VGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMP 711
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++W LL AC H N ++ E ++LL+L+
Sbjct: 712 IPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELE 746
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 147/337 (43%), Gaps = 65/337 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY M+ C G I + +H L K F SD ++ IDM+ K G +D A+
Sbjct: 346 FTYPCMLR---TCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQ-- 400
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
R+L M + E+D+VSW +MI+ +H F E L TF E+
Sbjct: 401 -----------------RILDMIE---EKDVVSWTSMIAGYVQHEFCKEALETFKEMQAC 440
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G ++ A+A SA A + + G +H+RV S DV + +GL+ +Y +CG
Sbjct: 441 GIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGI---- 496
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF--- 285
+++A +FE + + I+W LIS F+Q+G+ E+ + F
Sbjct: 497 ------------------SKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKM 538
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLL 333
F FVS +S ++ + +GK + K YT ++ L G G +
Sbjct: 539 DQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSI 598
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370
+AK EM +K V W ++ CCS + L L
Sbjct: 599 EDAKMDFFEM-TKRNEVSWNTII-TCCSQHGRGLEAL 633
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 128/305 (41%), Gaps = 61/305 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H V K F S+ + + I ++++C + A+ F ML +C
Sbjct: 165 IHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDML----YC------------- 207
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
D V++NT+IS + G G L F E+ G S+ A+ +A ++V DL
Sbjct: 208 -----DSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRK 262
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G LHS ++ SLD + L+D+Y+K G IE ++QI
Sbjct: 263 GKQLHSYLLKAGMSLDYIMEGSLLDLYVKSG--DIEEALQI------------------- 301
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGP 300
F+ R N++ W +++ A+ Q L K F+ + +L C+H+G
Sbjct: 302 -FDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGE 360
Query: 301 VTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ G+ H T F Y ++D+ G L +A++++D M + V W +++
Sbjct: 361 IGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILD-MIEEKDVVSWTSMIA 419
Query: 358 ACCSH 362
H
Sbjct: 420 GYVQH 424
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
L+ K + R +F+++ RD VSW ++S ++G G E + + E+ G +
Sbjct: 85 DLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPY 144
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ ++ SA + G +H +V + FVG+ LI +YL+C
Sbjct: 145 VLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRC------------- 191
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
S + AD F M + +++ LIS +Q G ++ F
Sbjct: 192 ---------RSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSP 242
Query: 287 ---FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLI 340
SLL+ CS G + KGK + + K + ++ ++DL SG + EA ++
Sbjct: 243 DSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIF 302
Query: 341 DEMPSKPTCVIWGALLGA 358
D + V+W +L A
Sbjct: 303 DS-GDRTNVVLWNLMLVA 319
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 60/321 (18%), Positives = 106/321 (33%), Gaps = 93/321 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--------------QLIDDDYRVFCDIGP 46
+ AC + + R IH Q+ S F+ +L D RVFCD+
Sbjct: 150 LSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLAD---RVFCDMLY 206
Query: 47 RYLFTYNTMINGGVRC--------------------------------LCVGNIKMALHL 74
T+NT+I+G +C VG+++ L
Sbjct: 207 CDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQL 266
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H + K D + S +D++VK G ++ A L +F
Sbjct: 267 HSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEA----------------------LQIFDS 304
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
++V WN M+ + ++ F + G + Y ++ G
Sbjct: 305 GDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG 364
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+HS + D++V LIDMY K G KA
Sbjct: 365 EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGW----------------------LDKAQRI 402
Query: 255 FELMSRRNMISWMVLISAFSQ 275
+++ ++++SW +I+ + Q
Sbjct: 403 LDMIEEKDVVSWTSMIAGYVQ 423
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 151/341 (44%), Gaps = 76/341 (22%)
Query: 69 KMALHLHGLV-KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
K + +HG + ++ + + D I + +DM+ K G +D A
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK------------------- 474
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETL--------CTFIELWNHGFGLSSMLYA 179
+F+ +P +D++SWNT+I+ ++G E + C I + N G +
Sbjct: 475 ---VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEI-IPNQG------TWV 524
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ A A V L+ G +H RV+ LDVFV + LID+Y KCG ++ A+
Sbjct: 525 SILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCG--------RLVDAMS 576
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
Y + + + ++W +IS G EK F
Sbjct: 577 LFYQ--------------VPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 622
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEM 343
FVSLLS CSHSG V +GK F M ++ ++ CMVDLLG +G L A I +M
Sbjct: 623 TFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDM 682
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
P +P IWGALLGAC H N +L + L ++D K G
Sbjct: 683 PLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVG 723
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 42/250 (16%)
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
GI R L F MP RD+ SWN MIS L ++G + L E+ G ++ + +
Sbjct: 267 GIARSL--FDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 324
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
+ D+ +H V+ D+FV + AL+ MYA
Sbjct: 325 VCPQLGDISTAMLIHLYVIKHGLEFDLFVSN----------------------ALINMYA 362
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQA-------GVLEKPRFFFFFVSLLSGCS 296
+ G+ + A AF+ M +++SW +I+A+ Q G K + F LL+ S
Sbjct: 363 KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS 422
Query: 297 HSGPVTKGK--------HYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSK 346
+ V + + H F + + +VD+ GLL A K+ + +P K
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK 482
Query: 347 PTCVIWGALL 356
+ W L+
Sbjct: 483 -DVISWNTLI 491
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 53/249 (21%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML------YATAFSAR 185
F ++P++D+ +WN+MIS +G E + F +L L S + + A
Sbjct: 174 FDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL-----LVSEIRPDFYTFPPVLKAC 228
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
++ D G +H + +VFV + LI MY + G GI S+
Sbjct: 229 GTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSL------------- 272
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRF------FFFFVSLL 292
F+ M R+M SW +IS Q G VL++ R F VS+L
Sbjct: 273 ---------FDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSIL 323
Query: 293 SGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
C G ++ H + + + ++++ G L +A+K +M
Sbjct: 324 PVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM-FITDV 382
Query: 350 VIWGALLGA 358
V W +++ A
Sbjct: 383 VSWNSIIAA 391
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 162/359 (45%), Gaps = 57/359 (15%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA-KSSIDMHVKCGAVDY 105
R + ++N MI+G V+ +G+ +M V + I+ + I+ + G +D
Sbjct: 64 RDVVSWNAMIDGYVKRGEMGHTRMVFD--------RMVCRDVISWNTIINGYAIVGKIDE 115
Query: 106 AESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
A+ F M +L W + +F +MP RD+VSWN+M++ + G
Sbjct: 116 AKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKP 175
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L F ++ G + + SA A + L+ G HLH+ + ++ VG+ L
Sbjct: 176 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTAL 235
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+DMY KCG + + + F M +++++W +I+ +
Sbjct: 236 VDMYAKCGKISLATQV----------------------FNAMESKDVLAWNTIIAGMAIH 273
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
G +++ + F FV++LS CSH+G V +G+ M+ +
Sbjct: 274 GHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 333
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ C++DLL +GLL EA +LI MP +P GALLG C H N +L E+V + L+ L
Sbjct: 334 YDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINL 392
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 104/274 (37%), Gaps = 61/274 (22%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFET-------LCTFIELWNHGFGLSSMLYATAFS 183
+F +RD+VSWN MI + G T +C + WN T +
Sbjct: 57 LFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWN-----------TIIN 105
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A V ++ L + P ++ + ++ ++KC
Sbjct: 106 GYAIVGKIDEAKRLFDEM----PERNLVSWNSMLSGFVKC-------------------- 141
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
G+ ++A F M R+++SW +++ ++Q G + F VS
Sbjct: 142 --GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVS 199
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKP 347
LLS C+H G + KG H T + + +VD+ G + A ++ + M SK
Sbjct: 200 LLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESK- 258
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ W ++ H + K A+ + + + + V+
Sbjct: 259 DVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVE 292
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 13/154 (8%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+G E I +L+ +YA G A F L S R+++SW +I + + G + R
Sbjct: 29 SGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMV 88
Query: 286 F---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEA 336
F + ++++G + G + + K F M + + M+ G + EA
Sbjct: 89 FDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWN-SMLSGFVKCGNVEEA 147
Query: 337 KKLIDEMPSKPTCVIWGALLG--ACCSHYNTKLA 368
L EMP + V W ++L A C N LA
Sbjct: 148 FGLFSEMPCR-DVVSWNSMLACYAQCGKPNEALA 180
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 141/329 (42%), Gaps = 63/329 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H K SD + S ID +VK G +D +F
Sbjct: 190 VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRR----------------------VFD 227
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+M RDLV WN++I+ + G G + F+ + + GF + + A + LE
Sbjct: 228 EMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEA 287
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H+ V+ + D+ + + L+DMY KCG S + AD
Sbjct: 288 GRQVHAHVLKYD--RDLILHNALLDMYCKCG----------------------SLEDADA 323
Query: 254 AFELMSRRNMISWMVLISAFSQAG-VLEKPRFFFFF------------VSLLSGCSHSGP 300
F M +R++ISW ++S +Q G +E R F V +L CSH+G
Sbjct: 324 LFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGL 383
Query: 301 VTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V G HYF +M + + CMVDLLG +G L EA + I M +P VIW LL
Sbjct: 384 VEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLL 443
Query: 357 GACCSHYNTKLAELVMRNLLQLDVKVFGS 385
GAC H N LA R +L+L+ G+
Sbjct: 444 GACRMHKNASLAAYAAREILKLEPDDQGA 472
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 27/158 (17%)
Query: 122 KFGIIR-LLIMFQKMPERDLVSWNTMISIL-TRHGFGFETLCTFIELWNHGFGLSSMLYA 179
KFG++ L MF MP R++V+W T+++ L + G E L + + G ++ ++
Sbjct: 116 KFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFS 175
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ A + L +H+ V DVFV S LID Y+K G
Sbjct: 176 SVLGACTTPGMLT---AVHASTVKAGLDSDVFVRSSLIDAYVKLG--------------- 217
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+GG F+ M R+++ W +I+ F+Q+G
Sbjct: 218 --DLDGGRR-----VFDEMVTRDLVVWNSIIAGFAQSG 248
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 154/342 (45%), Gaps = 62/342 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + K +H V K F SD + + DM+ K G ++ A + F
Sbjct: 217 CGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF----------- 265
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
GI R++VS+ +I + L F+EL G + +++
Sbjct: 266 --GIDSEC--------RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSL 315
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A+ LE G LH++V+ + D FV S L+DMY KCG +E +IQ
Sbjct: 316 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGL--LEHAIQ-------- 365
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
AF+ + I+W L+S F Q G+ + FF F
Sbjct: 366 ------------AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITF 413
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
+SLL+GCSH+G V +G YF +M K TY ++ C++DLLG +G L EAK+ I+ M
Sbjct: 414 ISLLTGCSHAGLVEEGLDYFYSMDK-TYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 472
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
P +P W + LGAC H + ++ +L L++L+ K G+
Sbjct: 473 PFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 514
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 135/330 (40%), Gaps = 65/330 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F +++ I C +G+I+M +H L KF S+ + + DM+ KCGA+
Sbjct: 107 FAFSSAIRA---CASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAM------ 157
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F ++ F++MP +D VSW MI ++ G E L F ++ +
Sbjct: 158 -------------FDACKV---FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDE 201
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + + A ++ ++G +HS VV + D+FVG+ L DMY K
Sbjct: 202 EVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSK------- 254
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSR-RNMISWMVLISAFSQAGVLEKPRFFFF- 287
G + A F + S RN++S+ LI + + +EK F
Sbjct: 255 ---------------AGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVE 299
Query: 288 ------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVC--MVDLLGLSGL 332
F SL+ C++ + +G + K + FV +VD+ G GL
Sbjct: 300 LRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGL 359
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
L A + DE+ PT + W +L+ H
Sbjct: 360 LEHAIQAFDEI-GDPTEIAWNSLVSVFGQH 388
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 44/193 (22%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
++M+ KCG +D+A L +F MP+R+LVSW MIS L+++
Sbjct: 47 VNMYSKCGELDHA----------------------LKLFDTMPQRNLVSWTAMISGLSQN 84
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
E + TF + G + +++A A AS+ +E G +H + ++FVG
Sbjct: 85 SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
S L DMY KCG M+ A FE M ++ +SW +I +
Sbjct: 145 SNLEDMYSKCG---------------AMF-------DACKVFEEMPCKDEVSWTAMIDGY 182
Query: 274 SQAGVLEKPRFFF 286
S+ G E+ F
Sbjct: 183 SKIGEFEEALLAF 195
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 66/220 (30%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFL-QLIDDDYRVFCDIGP-----------RYLF 50
ACG+LK+ R +H+ ++ S IF+ + D Y D+ R +
Sbjct: 216 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 275
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
+Y +I+G V C ++ LH V
Sbjct: 276 SYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 335
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
K F D ++ +DM+ KCG +++A AF + +P+
Sbjct: 336 MKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPT--------------------- 374
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
++WN+++S+ +HG G + + F + + G +++ +
Sbjct: 375 -EIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITF 413
>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 148/334 (44%), Gaps = 60/334 (17%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
CV ++ + HG++ K F + + ID++ KC
Sbjct: 255 CVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAG--------------------- 293
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRH-GFGFETLCTFIELWNHGFGLSSMLYATAF 182
G++ +F+++ DLV WNTMIS +++ + + F E+ ++GF +
Sbjct: 294 GMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVT 353
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA +++ G +H+ + + + + + ALV MY
Sbjct: 354 SACSNLSSPSVGKQVHALAIKSDIPYN---------------------RVSVNNALVAMY 392
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFV 289
++ G+ A F+ M NM+S +I+ ++Q GV +E R F F+
Sbjct: 393 SKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFI 452
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
++LS C H+G V +G+ YF M + ++ CM+DLLG +G L EA+++I+ MP
Sbjct: 453 AVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPF 512
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P + W LLGAC H N +LA LQL+
Sbjct: 513 NPGSIEWATLLGACRKHGNVELAVKAANEFLQLE 546
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 42/236 (17%)
Query: 131 MFQKMPE---RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F++M E RD VSWN MI +H G E + F E+ G + A+ +A
Sbjct: 196 VFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTC 255
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
V DL G H ++ + VGSGLID+Y KC G
Sbjct: 256 VKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKC---------------------AGG 294
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLS 293
+ FE ++ +++ W +IS FSQ L + + F FV + S
Sbjct: 295 MVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTS 354
Query: 294 GCSH--SGPVTKGKHYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPS 345
CS+ S V K H + Y V +V + G + +A+++ D MP
Sbjct: 355 ACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPE 410
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 96/244 (39%), Gaps = 43/244 (17%)
Query: 46 PRYLFTYNTMINGGV--RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
P L T+ ++ + R L G AL+ L+ ++S+ ++ KCG++
Sbjct: 6 PLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTL-----LYSKCGSL 60
Query: 104 DYAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHG 154
A+++F P++F + K +I L +F ++P+ D+VS+NT+I+ G
Sbjct: 61 HNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRG 120
Query: 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGS 214
L F E+ FGL + A D+ LH VV
Sbjct: 121 ECRPALRLFAEVRELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVV------------ 166
Query: 215 GLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLIS 271
CG + S + A++ Y+ G +A F M R+ +SW +I
Sbjct: 167 -------VCGYDCYAS---VNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIV 216
Query: 272 AFSQ 275
A Q
Sbjct: 217 ACGQ 220
>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
Length = 691
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 100/420 (23%), Positives = 172/420 (40%), Gaps = 106/420 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID--------DDYRVFCDIGPRY-L 49
+KAC + + R+IH +I S F+ L+D DD R D PR L
Sbjct: 310 LKACAGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDL 369
Query: 50 FTYNTMINGGVRCLCVGNIKMALH----------------------------------LH 75
+N +I+G G + H +H
Sbjct: 370 ILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVH 429
Query: 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM 135
L +K +SD + ID + KCG +DYA + +F++
Sbjct: 430 ALAEKIGLLSDSHVVNGLIDSYWKCGRLDYA----------------------IKVFEES 467
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
D++S +M++ L++ G + + F+++ G S + ++ +A AS+ E G
Sbjct: 468 CSDDIISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQGK 527
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+H+ ++ + + DVF G+ L+ Y KC GS + AD+AF
Sbjct: 528 QVHAHLIKRQFTSDVFAGNALVYTYAKC----------------------GSIEDADMAF 565
Query: 256 ELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVT 302
+ + ++SW +I +Q G ++ F S+LS C+H+G V
Sbjct: 566 SGLPEKGVVSWSAMIGGLAQHGHGKRALELFHRMLDEGVAPNNITLTSVLSACNHAGLVD 625
Query: 303 KGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
K YF +M + ++ CM+D+LG +G L +A +L++ MP + +WGALLGA
Sbjct: 626 DAKKYFESMKEAFGIDRTEEHYACMIDILGRAGKLKDAMELVNNMPFQANAAVWGALLGA 685
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 128/340 (37%), Gaps = 70/340 (20%)
Query: 46 PR-YLFTYNTMINGGVRC---------LCVGNIKMALHLHGLVKKFYFVSDESIAKSSID 95
PR L+ + +M GV C C +++ +H L + D + + +
Sbjct: 84 PRDALWAFRSMRGRGVPCNEYALPIVLKCAPDVRFGAQVHALAVATRLIQDVFVTNALVA 143
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF 155
M+ G VD A+ F + ER+ VSWN MIS ++
Sbjct: 144 MYGGFGMVDEAKRIF---------------------DEPGGERNAVSWNGMISAYVKNDR 182
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
+ + F E+ G + ++ +A D E G +H VV DVF +
Sbjct: 183 CRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTANA 242
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
L+DMY K G + A + FE + +++SW LI+
Sbjct: 243 LVDMYSKL----------------------GDIEMAAVVFEKIPAADVVSWNALIAGCVT 280
Query: 276 AG----VLE-----KP----RFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF 320
G LE KP F S+L C+ +G G+ H F A +
Sbjct: 281 HGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADADSDEFV 340
Query: 321 -VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
V +VD+ G L +A+K+ D MP + ++W AL+ C
Sbjct: 341 AVGLVDMYAKDGFLDDARKVFDFMPRR-DLILWNALISGC 379
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 126/323 (39%), Gaps = 101/323 (31%)
Query: 7 LKSLPIAR---KIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIG-PRYLFT 51
LK P R ++HA ++T LI +F+ ++D+ R+F + G R +
Sbjct: 110 LKCAPDVRFGAQVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVS 169
Query: 52 YNTMINGGV---RCL----------------------CVGNI-------KMALHLHGLVK 79
+N MI+ V RC CV N + +HG+V
Sbjct: 170 WNGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVV 229
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
+ + D A + +DM+ K G ++ A ++F+K+P D
Sbjct: 230 RTGYDKDVFTANALVDMYSKLGDIEMAA----------------------VVFEKIPAAD 267
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSSMLYATAFSARASVYDLEWG 194
+VSWN +I+ HG L +++ G F LSS+L A A A ++L G
Sbjct: 268 VVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKAC---AGAGAFNL--G 322
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H ++ + D FV GL+D MYA+ G A
Sbjct: 323 RQIHGFMIKADADSDEFVAVGLVD----------------------MYAKDGFLDDARKV 360
Query: 255 FELMSRRNMISWMVLISAFSQAG 277
F+ M RR++I W LIS S G
Sbjct: 361 FDFMPRRDLILWNALISGCSHDG 383
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 130/346 (37%), Gaps = 67/346 (19%)
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
+FT ++++ C G + +HG + K SDE +A +DM+ K G +D A
Sbjct: 303 VFTLSSVLKA---CAGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARK 359
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+F MP RDL+ WN +IS + G E L F +
Sbjct: 360 ----------------------VFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRK 397
Query: 169 HGFGL--SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
G L + A + AS+ + +H+ + D V +GLID Y KCG
Sbjct: 398 EGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSYWKCG-- 455
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF 285
++ +I++ FE ++IS +++A SQ E + F
Sbjct: 456 RLDYAIKV--------------------FEESCSDDIISSTSMMTALSQCDHGEDAIKLF 495
Query: 286 ------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLS 330
F SLL+ C+ +GK + K +T +V
Sbjct: 496 VQMLRKGLEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYTYAKC 555
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA-ELVMRNL 375
G + +A +P K V W A++G H + K A EL R L
Sbjct: 556 GSIEDADMAFSGLPEKGV-VSWSAMIGGLAQHGHGKRALELFHRML 600
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 150/340 (44%), Gaps = 67/340 (19%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C+G IK +HG + +SD + + ID++ +CG +DYA
Sbjct: 377 CLGKIK---EIHGYTIRG-GLSDPVLQNTIIDVYGECGIIDYA----------------- 415
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+R+ F+ + +D+VSW +MIS +G + L F + G + + S
Sbjct: 416 --VRI---FESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILS 470
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A S+ L+ G +H ++ L+ + + L+DMY +CG
Sbjct: 471 AVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCG------------------- 511
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVS 290
S + A F RN+I W +ISA+ G E F F++
Sbjct: 512 ---SVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLA 568
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
LL CSHSG V +GK + M K Y ++ C+VDLLG L EA +++ M +
Sbjct: 569 LLYACSHSGLVNEGKSFLEIM-KCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQN 627
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+PT +W ALLGAC H N ++ E+ LL+LD+ G+
Sbjct: 628 EPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGN 667
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 33/263 (12%)
Query: 36 DDYRVFCDIGPRYLFTYNTMINGGV-RCLCVGNIKMALHLHGLVKKFYFVSDESIAKS-S 93
D +F + R +FT+N M+ G V +G ++M + L F + + K+
Sbjct: 10 DAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACG 69
Query: 94 IDMHVKCGA------VDYAESAFLRMLNP--SLFCWKFGIIRLLIMFQKMPER-DLVSWN 144
I + CGA + Y +F+ ++N +L+ I +F +M R D+VSWN
Sbjct: 70 IVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWN 129
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
++IS + +G E LC F E+ G ++ +A A A ++ G +H+ ++
Sbjct: 130 SIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKS 189
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
LDV+V + ALV MY G +A + F + ++++
Sbjct: 190 GRVLDVYVAN----------------------ALVAMYVRFGKMPEAAVIFGNLEGKDIV 227
Query: 265 SWMVLISAFSQAGVLEKPRFFFF 287
+W +++ F Q G+ + FF+
Sbjct: 228 TWNSMLTGFIQNGLYSEALEFFY 250
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 44/208 (21%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
IK+ + +H + K V D +A + + M+V+ G + A
Sbjct: 176 IKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAA-------------------- 215
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
++F + +D+V+WN+M++ ++G E L F +L N + + A
Sbjct: 216 --VIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGR 273
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ L G +H+ + NG +S+I +G L+ MYA+
Sbjct: 274 LGYLLNGKEIHAYAIK----------------------NGFDSNILVGNTLIDMYAKCCC 311
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQ 275
AF+LM+ +++ISW + ++Q
Sbjct: 312 MSYGGRAFDLMAHKDLISWTTAAAGYAQ 339
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 36/198 (18%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F KM ER + +WN M+ +G L + E+ + G S + A V
Sbjct: 13 MIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVE 72
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
DL G +H + +K GC +S + + +LV +YA+
Sbjct: 73 DLFCGAEIHG-------------------LAIKYGC---DSFVFVVNSLVALYAKCNDIN 110
Query: 250 KADLAFELMSRRN-MISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
A F+ M RN ++SW +ISA+S G+ + F F + L C
Sbjct: 111 GARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQAC 170
Query: 296 SHSGPVTKGKHYFTAMAK 313
S + G A+ K
Sbjct: 171 EDSSFIKLGMQIHAAILK 188
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 141/332 (42%), Gaps = 60/332 (18%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C+ ++K +H V K + + S M+ KCG V A+
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK---------------- 277
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
I+F KM +L+ WN MIS ++G+ E + F E+ N ++ +A S
Sbjct: 278 ------ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A V LE ++ V + DVF+ S LIDM+ KC
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC-------------------- 371
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
GS + A L F+ R+++ W +I + G + + F+
Sbjct: 372 --GSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LL C+HSG V +G +F MA ++ C++DLLG +G L +A ++I MP +P
Sbjct: 430 LLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQP 489
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WGALL AC H + +L E + L +D
Sbjct: 490 GVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/323 (19%), Positives = 124/323 (38%), Gaps = 62/323 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ ++ C + +++M +H V + F +D + I ++ KC
Sbjct: 120 FTFPHLLKA---CSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCR-------- 168
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ G R + +PER +VSW ++S ++G E L F ++
Sbjct: 169 ------------RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM 216
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + +A + DL+ G +H+ VV M G+E
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM----------------------GLE 254
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
+ +L TMYA+ G A + F+ M N+I W +IS +++ G + F
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLL 333
S +S C+ G + + + + + + Y F+ ++D+ G +
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374
Query: 334 GEAKKLIDEMPSKPTCVIWGALL 356
A+ + D + V+W A++
Sbjct: 375 EGARLVFDRTLDR-DVVVWSAMI 396
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 104/264 (39%), Gaps = 31/264 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +P + WN +I +R+ + L + + S + A + +
Sbjct: 75 VFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH 134
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----------GCNGIESSIQIGKALV 239
L+ G +H++V + DVFV +GLI +Y KC G E +I A+V
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194
Query: 240 TMYAEGGSTQKADLAFELMSRRNM-ISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCS-H 297
+ YA+ G +A F M + ++ W+ L+S + F L G S H
Sbjct: 195 SAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNA---------FTCLQDLKQGRSIH 245
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ V G + T Y C G + AK L D+M S P ++W A++
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKC--------GQVATAKILFDKMKS-PNLILWNAMIS 296
Query: 358 ACCSHYNTKLAELVMRNLLQLDVK 381
+ + A + ++ DV+
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVR 320
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
++ MIN VR C VG+++ A ++ V + + D I+ + IDM K
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGII 126
CG+V+ A F R L+ + W I+
Sbjct: 371 CGSVEGARLVFDRTLDRDVVVWSAMIV 397
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 163/390 (41%), Gaps = 89/390 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD----------------- 104
C + + + ++H ++ K F SD I + I M+ KCG V+
Sbjct: 914 CGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVM 973
Query: 105 ------YAESAFLRM------------LNPSLFCWKFGIIRL-------------LIMFQ 133
YA+ F+ + P++ W I +M
Sbjct: 974 NAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTA 1033
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
E D+VSW ++IS ++ E F E+ + GF SS+ ++ A +V +L
Sbjct: 1034 NGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRH 1093
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H + + G+E + + ALV MYA+ G +A +
Sbjct: 1094 GKEIHGYAMVI----------------------GVEKDVYVRSALVDMYAKCGYISEAKI 1131
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F +M RN ++W LI ++ G + F F ++L+ CSH+G
Sbjct: 1132 LFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGM 1191
Query: 301 VTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
V G+ F M + Y ++ CMVDLLG +G L EA LI MP +P +WGAL
Sbjct: 1192 VELGESLFXKMQE-KYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGAL 1250
Query: 356 LGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
LGAC +H N +LAE+ +L +L+ + GS
Sbjct: 1251 LGACRNHGNIELAEVAAEHLFELEPESPGS 1280
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/439 (23%), Positives = 173/439 (39%), Gaps = 103/439 (23%)
Query: 1 MKACGSLKSLPIARKIHA-----QLISTCLISSIFLQL------IDDDYRVFCDIGPRYL 49
+ CG++ ++ +++HA Q +S + + L L +++ VF + R +
Sbjct: 221 LAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNI 280
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++ ING G+ C CV + H
Sbjct: 281 ISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQ 340
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V K S + + IDM+ G +D AE F +M +
Sbjct: 341 VIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAA-------------------- 380
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
VSWN +I+ + + + F + + Y+ F A +S L +
Sbjct: 381 -SNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQI 439
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
HSR++ ++ V S LI+ Y +CG +E+++Q+ F
Sbjct: 440 HSRLIKSNVESNLHVASSLIEAYTQCG--SLENAVQV--------------------FTQ 477
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+S +++SW +I A+SQ G K F F+++LS CSHSG V +G
Sbjct: 478 ISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEG 537
Query: 305 KHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+ +F +M + + CMVD+LG +G L A I ++ KPT IW LL AC
Sbjct: 538 QEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACR 597
Query: 361 SHYNTKLAELVMRNLLQLD 379
+ N ++AE V +L L+
Sbjct: 598 YNSNLQMAEYVAEKILDLE 616
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 130/313 (41%), Gaps = 62/313 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G +++ H V K SDE + S IDM+ KCG VD A
Sbjct: 123 CGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA--------------- 167
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ ++ KM D + N +IS R+GF + F+++ N G + Y+T
Sbjct: 168 -------VRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTM 220
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ ++ ++ G LH+ VV M+ + VG+ L+ +Y KCG
Sbjct: 221 LAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGM---------------- 264
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK--------------PRFFFF 287
++A++ FE + +RN+ISW I+ F Q G +K P F F
Sbjct: 265 ------MEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTF 318
Query: 288 FVSLLSGCSHSGPVTKGKHYFT-AMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMP 344
+ +L+ C G+ + T + K + FV ++D+ G + EA+K +M
Sbjct: 319 SI-VLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMG 377
Query: 345 SKPTCVIWGALLG 357
+ V W AL+
Sbjct: 378 RAASNVSWNALIA 390
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 119/290 (41%), Gaps = 58/290 (20%)
Query: 15 KIHAQLISTCLISSIFLQ-LID--DDYRVFCDIGPRYLF-----TYNTMIN--GGVRCLC 64
+I + I T L ++ +Q LI+ + YRV+ +I F TY I+ R L
Sbjct: 761 RITDRYIPTPLAAAAAMQSLINRANVYRVYRNISTHRTFQSSSDTYAKAIDMYARDRALY 820
Query: 65 VGNIKMALHLH----GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
G ALH H GL + YF A + + +CG + A
Sbjct: 821 RGR---ALHAHLVIIGLARLTYF------AAKLMSFYTECGQLSNARK------------ 859
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+F K+P ++ W + R GF E L F E+ G + + +
Sbjct: 860 ----------LFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPS 909
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-----CNG----IESS 231
A + D G ++H+ ++ D ++ S LI MY KCG C ++
Sbjct: 910 ILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKD 969
Query: 232 IQIGKALVTMYAEGGSTQKA-DLAFELMS---RRNMISWMVLISAFSQAG 277
+ + A+V+ YA+ G +A BL ++ + N++SW LI+ FSQ G
Sbjct: 970 LVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVG 1019
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 154/339 (45%), Gaps = 55/339 (16%)
Query: 68 IKMALHLHGLVKKF---YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+ A +H L+ K VSD ++ S I + + G V A F M + ++ W
Sbjct: 73 VAEAEQIHALLVKSGVPRTVSDVQVSTSLIRAYARLGRVCDARKVFDGMPDRTVVTWNVL 132
Query: 125 IIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
+ L+ +F +MP+R++VSWNT+I+ TR+G+ E + F+E+ +GL+
Sbjct: 133 LDALVRDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEM-TVAYGLAP 191
Query: 176 MLYATAFSARASVYD---LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
AT ++V D L G H V+ E SLD +G LI MY +CG G S
Sbjct: 192 D-EATMVGFVSAVRDIGLLGIGKSAHGYVLRREFSLDGALGVALISMYTRCGSMGAAHSC 250
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
F ++ +N+ W LI+ F+ G EK F
Sbjct: 251 ----------------------FLSVTTKNVEHWTSLIAGFAAHGQPEKALRLFAEMRRV 288
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEA 336
FV++L+ C+H G V++G YF M ++ C+VDLLG +G L EA
Sbjct: 289 GIEPNGVTFVAVLNACNHGGLVSEGFKYFDLMRSMGIRPMIQHYGCLVDLLGRAGFLKEA 348
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
L +P P VIW +LL AC SH + ++AEL L
Sbjct: 349 FNLASNLPEDPGFVIWSSLLAACHSHGDVEMAELTASKL 387
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 144/322 (44%), Gaps = 58/322 (18%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPER 138
S+ + I ++ +CG + A F +M L W I +F++MP R
Sbjct: 314 SVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVR 373
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
L++W MIS L ++GFG E L F ++ G YA A ++ + + L+ G LH
Sbjct: 374 SLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLH 433
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
S+++ + + VG+ LI MY +CG + AD F M
Sbjct: 434 SQIIQLGHDSSLSVGNALITMYSRCGL----------------------VEAADTVFLTM 471
Query: 259 SRRNMISWMVLISAFSQAG-------VLEK-------PRFFFFFVSLLSGCSHSGPVTKG 304
+ +SW +I+A +Q G + EK P F+++LS CSH+G V +G
Sbjct: 472 PYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPD-RITFLTILSACSHAGLVKEG 530
Query: 305 KHYFTAMAKFTYTCYFVC--------MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+HYF M CY + ++DLL +G+ EAK + + MP +P IW ALL
Sbjct: 531 RHYFDTMR----VCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALL 586
Query: 357 GACCSHYNTKLAELVMRNLLQL 378
C H N +L LL+L
Sbjct: 587 AGCWIHGNMELGIQAADRLLEL 608
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 141/356 (39%), Gaps = 74/356 (20%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKF--------GIIRL---LIMFQKMPERDLVS 142
ID + K + YA F ++ P + G I+L L M RD VS
Sbjct: 38 IDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVS 97
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
+N MI+ + G L F+++ GF +++ A + + D E H + +
Sbjct: 98 YNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEE----THCQQL 153
Query: 203 HME---------PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
H E PS V + L+ Y+ C + + +S + A ++ E ++ +
Sbjct: 154 HCEVFKWGALSVPS----VLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEP 209
Query: 254 AF-----------ELMSRRNM---------ISWMVLISAFSQAGVLEKP-----RFF--- 285
A+ +L++ R + ++W +IS + G E+ R
Sbjct: 210 AWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLG 269
Query: 286 -----FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-----CMVDLLGLSGLL 333
+ + S++S S++G G+ H + + +FV ++ L G L
Sbjct: 270 IQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKL 329
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCS-----HYNTKLAELVMRNLLQLDVKVFG 384
EA+++ D+MP K V W A+L C + N+ E+ +R+LL V + G
Sbjct: 330 VEARRVFDKMPVK-DLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISG 384
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++ LH + + S S+ + I M+ +CG V+ A++ FL
Sbjct: 420 CSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFL---------- 469
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
MP D VSWN MI+ L +HG G + + + ++ + + T
Sbjct: 470 ------------TMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTI 517
Query: 182 FSARASVYDLEWGPHLHS--RVVH-MEPSLDVFVGSGLIDMYLKCG 224
SA + ++ G H RV + + P D + S LID+ + G
Sbjct: 518 LSACSHAGLVKEGRHYFDTMRVCYGITPEEDHY--SRLIDLLCRAG 561
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 31/192 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+ + M + V+WN MIS GF E + + G L Y + SA ++
Sbjct: 230 LLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGL 289
Query: 191 LEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
G +H+ V+ ++PS FV + + AL+T+Y G
Sbjct: 290 FNIGRQVHAYVLRTVVQPS-GHFV-------------------LSVNNALITLYTRCGKL 329
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKP---------RFFFFFVSLLSGCSHSG 299
+A F+ M ++++SW ++S A +E+ R + ++SG + +G
Sbjct: 330 VEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNG 389
Query: 300 PVTKGKHYFTAM 311
+G F M
Sbjct: 390 FGEEGLKLFNQM 401
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 150/343 (43%), Gaps = 47/343 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +H K ++ ++ S IDM+ KC YA+ F + + CW
Sbjct: 389 CATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCW 448
Query: 122 KFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I + +F KMP R+ VSWNTMIS + + L F + G
Sbjct: 449 NSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHI 508
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ ++ A A++ LE G +H+ +V + GIE +I
Sbjct: 509 PGEITLSSVLLACANLCSLEMGRMVHAEIVKL----------------------GIEDNI 546
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+G AL MYA+ G + F M +N I+W ++ ++ G E+ F
Sbjct: 547 FMGTALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIEN 606
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEA 336
F+++L CSH G V + HYF M + ++ CMVD+L +G L EA
Sbjct: 607 GIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEA 666
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++L+ ++ S+ W +LL AC ++ N ++ E + L +L+
Sbjct: 667 EELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELE 709
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 160/385 (41%), Gaps = 52/385 (13%)
Query: 16 IHAQLISTCLISS-IFLQLIDDDYRVF-----CDIGPRYLFTYNTMINGGVRCLCVGNIK 69
+H+ T +IS + +L D + VF C + P + T+I C+ G
Sbjct: 208 LHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVV----TLICVIKACVGAGEFD 263
Query: 70 MALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF----- 123
+A+ + GL VK F + S I ++++ G A F M + W
Sbjct: 264 LAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVY 323
Query: 124 -------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
G R+L MP R+ VSW T+I+ + G E L + ++ G +
Sbjct: 324 ADLGDLDGARRVL---DAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNIS 380
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-C-------NGI 228
+++ SA A++ DL G +H+ + M S ++FV S LIDMY KC C N +
Sbjct: 381 CFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSL 440
Query: 229 -ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
E + +L++ Y+ G +A+ F M RN +SW +IS +++ +F+
Sbjct: 441 PEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFY 500
Query: 288 -------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSG 331
S+L C++ + G+ + K + D+ SG
Sbjct: 501 AMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSG 560
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALL 356
L ++++ +MP K + W A++
Sbjct: 561 DLDSSRRVFYQMPEKNN-ITWTAMV 584
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 102/249 (40%), Gaps = 40/249 (16%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV---KCGAVDYAESAFLRMLNPSLFCWK 122
G + + L LH + +D S+A + + + + G D A + S F +
Sbjct: 94 GCLPLVLSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYD 153
Query: 123 F---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH---- 169
F I +F MPE+ +VS+ TM+ L + G ++ +EL+
Sbjct: 154 FMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRG----SVRDAVELYERCPLH 209
Query: 170 ----------GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
GF + + L+ AF+ + P+ VV + + VG+G D+
Sbjct: 210 SVAFFTAMISGF-VRNELHKDAFTVFRKMLTCSVRPN----VVTLICVIKACVGAGEFDL 264
Query: 220 Y-----LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
L CN E SI++ +L+T+Y G A F+ M R+++SW L+ ++
Sbjct: 265 AMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYA 324
Query: 275 QAGVLEKPR 283
G L+ R
Sbjct: 325 DLGDLDGAR 333
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 141/321 (43%), Gaps = 60/321 (18%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
HG+ K E +A + I+M+ +CG V A +MF +
Sbjct: 161 HGVAVKAGAAEHEYVAPTLINMYAECGDVRAAR----------------------VMFDR 198
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
M +VS+N MI+ R E L F E+ G +S+ + SA A + LE G
Sbjct: 199 MDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG 258
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H + M ++S +++ AL+ MYA+ GS + A
Sbjct: 259 RWIHDYIRKMR----------------------LDSLVKVNTALIDMYAKCGSLEDAIGV 296
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
F+ M R+ +W V++ A++ G + F F+ +L CSHSG V
Sbjct: 297 FQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMV 356
Query: 302 TKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
++G YF +M ++ ++ C+ DLL SG L A K IDE+P KPT ++W LL A
Sbjct: 357 SEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSA 416
Query: 359 CCSHYNTKLAELVMRNLLQLD 379
C H + + + V +L+LD
Sbjct: 417 CAGHGDVDMGKRVFERILELD 437
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 22/121 (18%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T T+I+ C +G +++ +H ++K S + + IDM+ KCG+++ A
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA---- 293
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+ +FQ M RD +W+ M+ HG+G E + F E+ G
Sbjct: 294 ------------------IGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQG 335
Query: 171 F 171
Sbjct: 336 M 336
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 127/275 (46%), Gaps = 42/275 (15%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+ +F MP++D VSW+TMIS ++ L F + G + + SA ++
Sbjct: 352 MTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNL 411
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
LE G +H V + + + +G+ LIDMY+KCG +E+++ +
Sbjct: 412 SALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGY--LEAAMDV-------------- 455
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSG 294
F +M + W +I + G++ K F F +LS
Sbjct: 456 ------FNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSA 509
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
C H+G V +G+H+F M + Y ++ CMVDLLG +G + EA+ LI+ MP P
Sbjct: 510 CRHAGLVEEGRHFFKLM-QHKYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIESMPMSPDV 568
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
WGALLGAC H ++ E V R L+ LD + G
Sbjct: 569 PAWGALLGACWKHGENEVGERVGRKLVNLDPRHDG 603
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 118/323 (36%), Gaps = 50/323 (15%)
Query: 97 HVKCGAVDYAESAFLRMLNP---------SLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+V G VD A F RM SLF + + +F + RD+ +W MI
Sbjct: 179 YVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMI 238
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
S R+ E L F + + + L + +A A + G H V+
Sbjct: 239 SCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLC 298
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQI-----------GKALVTMYAEGGSTQKADLAFE 256
+ + + LI MY C C + ++ ++ +++ Y + G + A F
Sbjct: 299 SLLNIQNVLIHMY-SC-CLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFS 356
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303
M ++ +SW +IS Q F VS++S C++ + K
Sbjct: 357 AMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEK 416
Query: 304 GK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
GK H + K T ++D+ G L A + + M K GA C
Sbjct: 417 GKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEK----------GAPC 466
Query: 361 SHYNTKLAELVMRNLLQLDVKVF 383
+N + L M L+ +++F
Sbjct: 467 --WNAVIVGLAMNGLVTKSLEIF 487
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 162/367 (44%), Gaps = 55/367 (14%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
R+F + R + ++N+MI G L VG + A L + VS +I +D +V
Sbjct: 2 RLFKVMDERDVVSWNSMIRG---LLKVGELSEACKLFDEMPMKDAVSWNTI----LDGYV 54
Query: 99 KCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLLIM-FQKMPERDLVSWNTMISI 149
K G ++ A F M ++ W K G + + M F +MP ++LVSW ++S
Sbjct: 55 KAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSG 114
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
G + + +F ++ G + ++ A L G +H+ + +
Sbjct: 115 YAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIR---- 170
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
KC S+ + ALV MYA+ G +A F MS+++++SW +
Sbjct: 171 -----------YKC-------SVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCM 212
Query: 270 ISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK--- 313
+ + G EK F V++L C H+G V +G YF M +
Sbjct: 213 LQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYG 272
Query: 314 -FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
+ ++ CMVDLLG G L EA +L+ MP +P VIWG LLGAC H LAE V+
Sbjct: 273 IVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVL 332
Query: 373 RNLLQLD 379
L +L+
Sbjct: 333 DCLFKLE 339
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 148/336 (44%), Gaps = 63/336 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + LHG+V K + S I+M+ K G +D A
Sbjct: 174 CADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ------------- 220
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F++MP R LVSWN+M+ I +G+ + + F + G AT
Sbjct: 221 ---------LFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQ---ATM 268
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL-KCGCNGIESSIQIGKALVT 240
+ + D G S I Y+ +CG N + I I AL+
Sbjct: 269 VALLRACTDTGLGRQAES-----------------IHAYIHRCGFN---ADIIIATALLN 308
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFS-QAGVLEKPRFFFF------------ 287
+YA+ G ++ FE + R+ I+W +++ ++ A E + F
Sbjct: 309 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 368
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYT----CYFVCMVDLLGLSGLLGEAKKLIDEM 343
F LLS CSHSG V +GK YF M++ ++ CMVDLLG SG L +A +LI M
Sbjct: 369 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 428
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P +P+ +WGALLGAC + N +L + V LL LD
Sbjct: 429 PMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 464
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 44/274 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F +MP +DLVSWN+++S L+ G+ L F + G + + + SA A +
Sbjct: 119 LFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMG 178
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L+ G LH VV + G+ ++ +L+ MY + G
Sbjct: 179 ALDEGKSLHGVVVKL----------------------GMSGKAKVVNSLINMYGKLGFLD 216
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF-------------VSLLSGCS 296
A FE M R+++SW ++ + G EK F V+LL C+
Sbjct: 217 AASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACT 276
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE---AKKLIDEMPSKPTCVIWG 353
+G + + + + + + LL L LG ++ + +E+ + + W
Sbjct: 277 DTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR-IAWT 335
Query: 354 ALLGA----CCSHYNTKLAELVMRNLLQLDVKVF 383
A+L C KL +L+++ +++D F
Sbjct: 336 AMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTF 369
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-------------- 279
IG LV+MY + G + A F+ M ++++SW L+S S G L
Sbjct: 99 IGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTES 158
Query: 280 -EKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGE 335
+P +S++S C+ G + +GK + K + ++++ G G L
Sbjct: 159 GRQPN-EVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDA 217
Query: 336 AKKLIDEMPSKPTCVIWGALL 356
A +L +EMP + + V W +++
Sbjct: 218 ASQLFEEMPVR-SLVSWNSMV 237
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 167/371 (45%), Gaps = 65/371 (17%)
Query: 36 DDYRVFCDIG-PRYLFTYNTMINGGVRCLC-VGNIKMALHLHGLVKKFYFVSDESIAKSS 93
D YR IG P FTY ++ V V + +HG + + F I +
Sbjct: 165 DLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTL 224
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+DM+ + G V LN S +F +MP +++VSW+ MI+ +++
Sbjct: 225 LDMYARFGCV----------LNASR------------VFDQMPVKNVVSWSAMIACYSKN 262
Query: 154 GFGFETLCTFIE--LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211
G E L F + L N +S+ + A A++ LE G +H ++
Sbjct: 263 GKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILR-------- 314
Query: 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271
G++S + + ALVT+YA G+ + FE M +R+++SW LIS
Sbjct: 315 --------------RGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLIS 360
Query: 272 AFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----F 314
++ G K F FVS+L CSH+G V +GK F +M + F
Sbjct: 361 SYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIF 420
Query: 315 TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374
++ CMVDLLG + L EA K+ID+M +P +WG+LLG+C H N +LAE
Sbjct: 421 PSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSR 480
Query: 375 LLQLDVKVFGS 385
L +L+ G+
Sbjct: 481 LFELEPTNAGN 491
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 26/151 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA----RA 186
+F K +R + WN + LT G+G E L + + G Y A A
Sbjct: 135 VFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEA 194
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
V L G +H ++ +G E + I L+ MYA G
Sbjct: 195 FVSLLLNGREIHGHILR----------------------HGFEGHVHIMTTLLDMYARFG 232
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAG 277
A F+ M +N++SW +I+ +S+ G
Sbjct: 233 CVLNASRVFDQMPVKNVVSWSAMIACYSKNG 263
>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
Length = 665
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 152/351 (43%), Gaps = 52/351 (14%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD-----YAESAFLRMLNPSLF 119
VG + + LHG K +D + + IDM+ KCG + ES+ + + + +
Sbjct: 170 VGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNAL 229
Query: 120 CWKFG----IIRLLIMFQKMPER----DLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+ L +F++ +R ++VSW ++++ ++G E + F E+ G
Sbjct: 230 IAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGT 289
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+S+ A A+V L G H + DV+V S L+DMY KC
Sbjct: 290 EPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKC-------- 341
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF---- 287
G + A + F+ M RN++SW +I ++ G + F
Sbjct: 342 --------------GRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLK 387
Query: 288 ---------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLG 334
F LL+ C+ +G +G+HYF M ++ CMV LLG +G L
Sbjct: 388 CKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLD 447
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
EA LI +MP +P IWG+LLG+C H N LAE+ L L+ + G+
Sbjct: 448 EAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGN 498
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 133/348 (38%), Gaps = 71/348 (20%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP--SLFCWKF-- 123
+ +A LH + + D +A S + +++ G A + F M P ++ W
Sbjct: 33 LPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALV 92
Query: 124 ----------GIIRLLIMFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
G RLL ++ E ++++WN ++S L R G + + + HG
Sbjct: 93 AAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATM--HGE 150
Query: 172 GL---SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---- 224
GL + + A SA V + G LH V D V + LIDMY KCG
Sbjct: 151 GLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAE 210
Query: 225 ---------------CN----GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
CN G+ + Q+ +AL + D EL N++S
Sbjct: 211 VVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLF------KEFVDRGVEL----NVVS 260
Query: 266 WMVLISAFSQAGV-LEKPRFFFFFVS------------LLSGCSHSGPVTKGK--HYFTA 310
W +++ Q G LE FF + +L ++ + G+ H F
Sbjct: 261 WTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFAL 320
Query: 311 MAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
F + Y +VD+ G + +A+ + D M S+ V W A++G
Sbjct: 321 RKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSR-NVVSWNAMIG 367
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 187/447 (41%), Gaps = 106/447 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLI------SSIFLQL------IDDDYRVFCDIGPRY 48
+KA ++ + ++IHA+ I T ++ S+ ++L I D +VF + R
Sbjct: 117 LKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRD 176
Query: 49 LFTYNTMINGGVR--------------------------------CLCVGNIKMALHLHG 76
L ++ T+I + C +G++ + +H
Sbjct: 177 LVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHS 236
Query: 77 LVKKFY-FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM 135
++ + +D + + +DM++KC ++ A +F +M
Sbjct: 237 YIRHYIDMKADVFVGNALLDMYLKCDDLNSAYK----------------------VFDEM 274
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
P +++V+WN MIS L G E L TF + + G + ++ A++ LE G
Sbjct: 275 PVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGK 334
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+H+ + D FVG+ L+DMY KC GS +A F
Sbjct: 335 WVHAYMRRNHILADKFVGNALLDMYAKC----------------------GSIDEAFRVF 372
Query: 256 ELMSRRNMISWMVLI-------------SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVT 302
E M RR++ S+ +I FS+ + F+ LL CSH G V
Sbjct: 373 ESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVA 432
Query: 303 KGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+GK YF M+ ++ CM+DLLG +GL+ EA+++I +M +P GALLGA
Sbjct: 433 EGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGA 492
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H N + E VM+ L +LD G+
Sbjct: 493 CRIHGNVDIGESVMQKLTELDPDEEGT 519
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 49/235 (20%)
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
N +I ++R+ + E+ G A A + + G +H+R +
Sbjct: 79 NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSI- 137
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
K G G ++ + L+ +Y+ GS F+ R++
Sbjct: 138 ------------------KTGMVGF--NVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDL 177
Query: 264 ISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKG------ 304
+SW LI AF++AG+ + F V +LS CS+ G + G
Sbjct: 178 VSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSY 237
Query: 305 -KHYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+HY A FV ++D+ L A K+ DEMP K V W A++
Sbjct: 238 IRHYIDMKADV-----FVGNALLDMYLKCDDLNSAYKVFDEMPVK-NVVTWNAMI 286
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 156/353 (44%), Gaps = 54/353 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA------ESAFLRMLN 115
C +G I + +H V K F +D I + +DM+ KC D A A+ +L
Sbjct: 315 CSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILL 374
Query: 116 PSLF-----CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
S+ C + R + F MP + L+SWN+MI +++ E L F E+ G
Sbjct: 375 NSMITVYSNCGRIDDARQI--FDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLG 432
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ A SA AS+ LE G + +R + D + + L+D Y KCG
Sbjct: 433 LRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGL----- 487
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPR 283
++ G+ L F+ M + + + W ++ ++ G V ++ R
Sbjct: 488 -VEHGRKL----------------FDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMR 530
Query: 284 FF------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGL 332
FV +LS C H G V +G+ +F AM K Y ++ CMVDL +GL
Sbjct: 531 SVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAM-KLDYHINPGIEHYSCMVDLYARAGL 589
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
L +A LI++MP K +W ++L C +H N L + V + ++ LD + G+
Sbjct: 590 LEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGA 642
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 132/332 (39%), Gaps = 41/332 (12%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF-- 119
C +G + +H + D + S ++++ KCG +D A M P F
Sbjct: 183 CTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSL 242
Query: 120 ---------CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
C + R + + +V WN+MIS + E L F + G
Sbjct: 243 SALISGYASCGRMNDARRIFCLKS--NACVVLWNSMISGYVANNEALEALELFNNMRRKG 300
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----GC 225
+A+ SA +++ ++ G +H+ V + + D+ + S L+DMY KC C
Sbjct: 301 VQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDAC 360
Query: 226 NGIESSIQ-----IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ-AGVL 279
+ S +Q + +++T+Y+ G A F+ M +++ISW +I FSQ A +
Sbjct: 361 K-LFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPI 419
Query: 280 EKPRFF------------FFFVSLLSGCSHSGPVTKGKHYF---TAMAKFTYTCYFVCMV 324
E F F ++S C+ + G+ F T + +V
Sbjct: 420 EALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLV 479
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
D GL+ +KL D M K V W ++L
Sbjct: 480 DFYCKCGLVEHGRKLFDRM-MKSDEVPWNSML 510
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 128/334 (38%), Gaps = 72/334 (21%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII---------RLLIMFQKMPER 138
SI + M+ +C ++ A+ F M + F W I + L +F MP +
Sbjct: 43 SIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK 102
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIEL-WNHGFGLSSMLY------------------- 178
D SWN +IS + G F E+ W +G +SM++
Sbjct: 103 DAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLS 162
Query: 179 --------------ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
AT A ++ L+ G +H+R+V E D +GS L+++Y KCG
Sbjct: 163 LNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCG 222
Query: 225 CNGIESSIQIGK-----------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
I+S+ + AL++ YA G A F L S ++ W +IS +
Sbjct: 223 --DIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGY 280
Query: 274 -SQAGVLEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF 320
+ LE F F S+LS CS G + +G + K +T
Sbjct: 281 VANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDI 340
Query: 321 V---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
+ +VD+ +A KL ++ + T ++
Sbjct: 341 IIDSALVDMYSKCRRPDDACKLFSDLQAYDTILL 374
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 64/227 (28%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMING--------------------GVR------------ 61
IDD ++F + + L ++N+MI G G+R
Sbjct: 387 IDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISA 446
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++++ + D+ I+ S +D + KCG V++ F RM+
Sbjct: 447 CASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMM------- 499
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ D V WN+M+ +G G E L F ++ + G + + +
Sbjct: 500 ---------------KSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGV 544
Query: 182 FSA----------RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
SA R Y ++ H++ + H +D++ +GL++
Sbjct: 545 LSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLE 591
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
++ G L ++LK G + S + IG L+ MY+ S ++A FE M +RN SW +
Sbjct: 22 IYRGRLLHILFLKSGV--LHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTM 79
Query: 270 ISAFSQAGVLEKP---------RFFFFFVSLLSGCSHSGPVTKGKHYFTAM 311
I + ++G K + F + ++SG + G + + F M
Sbjct: 80 IEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEM 130
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 141/321 (43%), Gaps = 60/321 (18%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
HG+ K E +A + I+M+ +CG V A +MF +
Sbjct: 161 HGVAVKAGAAEHEYVAPTLINMYAECGDVRAAR----------------------VMFDR 198
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
M +VS+N MI+ R E L F E+ G +S+ + SA A + LE G
Sbjct: 199 MDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG 258
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H + M ++S +++ AL+ MYA+ GS + A
Sbjct: 259 RWIHDYIRKMR----------------------LDSLVKVNTALIDMYAKCGSLEDAIGV 296
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
F+ M R+ +W V++ A++ G + F F+ +L CSHSG V
Sbjct: 297 FQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMV 356
Query: 302 TKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
++G YF +M ++ ++ C+ DLL SG L A K IDE+P KPT ++W LL A
Sbjct: 357 SEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSA 416
Query: 359 CCSHYNTKLAELVMRNLLQLD 379
C H + + + V +L+LD
Sbjct: 417 CAGHGDVDMGKRVFERILELD 437
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 22/121 (18%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T T+I+ C +G +++ +H ++K S + + IDM+ KCG+++ A
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA---- 293
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+ +FQ M RD +W+ M+ HG+G E + F E+ G
Sbjct: 294 ------------------IGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQG 335
Query: 171 F 171
Sbjct: 336 M 336
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 169/377 (44%), Gaps = 55/377 (14%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
I++ ++F +I + + ++N MI+G GN K AL L + K DES +
Sbjct: 170 IENAQKLFDEIPVKDVVSWNAMISGYAE---TGNYKEALELFKDMMKTNVRPDESTMVTV 226
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI--------------MFQKMPERD 139
+ + G+++ L ++ F I+ LI +F+ + +D
Sbjct: 227 VSACAQSGSIELGRQVHL-WIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKD 285
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
++SWNT+I T E L F E+ G + + + A A + ++ G +H
Sbjct: 286 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIH- 344
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+Y+ G+ ++ + +L+ MYA+ G + A F+ M
Sbjct: 345 -------------------VYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSML 385
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
R++ SW +I F+ G F FV LLS CSHSG + G+H
Sbjct: 386 TRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRH 445
Query: 307 YFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
F +M++ + T ++ CM+DLLG GL EAK++I MP +P VIW +LL AC H
Sbjct: 446 IFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMH 505
Query: 363 YNTKLAELVMRNLLQLD 379
N +L E +NL++++
Sbjct: 506 NNVELGESYAQNLIKIE 522
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 50/311 (16%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KF 123
+HG V K + D + S I M+V+ G ++ A F + + + + +
Sbjct: 109 QIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRG 168
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
I +F ++P +D+VSWN MIS G E L F ++ T S
Sbjct: 169 YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVS 228
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A +E G R VH+ ID + G S+++I AL+ +Y+
Sbjct: 229 ACAQSGSIELG-----RQVHL-----------WIDDH------GFGSNLKIVNALIDLYS 266
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
+ G + A FE +S +++ISW LI ++ + ++ F +S
Sbjct: 267 KCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLS 326
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK-----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+L C+H G + G+ + K + ++D+ G + AK++ D M +
Sbjct: 327 ILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLT 386
Query: 346 KPTCVIWGALL 356
+ + W A++
Sbjct: 387 R-SLSSWNAMI 396
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 116/281 (41%), Gaps = 30/281 (10%)
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
G+ + +F+ + E +L+ WNTM L ++ + + G + +
Sbjct: 37 GLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLK 96
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK------- 236
+ A G +H V+ + LD++V + LI MY++ G +E + ++
Sbjct: 97 SCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNG--RLEDARKVFDQSSHRDV 154
Query: 237 ----ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
AL+ YA G + A F+ + ++++SW +IS +++ G ++ F
Sbjct: 155 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 214
Query: 287 -------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEA 336
V+++S C+ SG + G+ H + F V ++DL G + A
Sbjct: 215 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETA 274
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
L + + K + W L+G K A L+ + +L+
Sbjct: 275 CGLFEGLSYKDV-ISWNTLIGGYTHMNLYKEALLLFQEMLR 314
>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
Length = 734
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 148/335 (44%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + M +H + K S+ S+ +D +VKCG ++ A +F R+ P
Sbjct: 299 CCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEP----- 353
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ VSW+ +IS ++ G + + F L + G L+S +Y +
Sbjct: 354 -----------------NDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSV 396
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
F A A+ +L G H + G+ S + A+VTM
Sbjct: 397 FQACAAQANLNMGSQAHGDAIK----------------------RGLVSYLYGESAMVTM 434
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
Y++ G A AFE + + ++W +IS ++ G + FF F
Sbjct: 435 YSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTF 494
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+++L+ CSHSG V + K Y +M++ ++ CM+D +GLL EA +LI+ MP
Sbjct: 495 IAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMP 554
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+P + W +LLG C +H + KL ++ NL +LD
Sbjct: 555 FEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLD 589
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/439 (20%), Positives = 162/439 (36%), Gaps = 104/439 (23%)
Query: 2 KACGSLKSLPIARKIHAQL----------ISTCLI-------SSIFLQLIDDDY------ 38
+ACG L+SL R IH +L I CL+ S I +Q + D+
Sbjct: 95 EACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSXIDVQKVFDEMLMKNLV 154
Query: 39 ------RVFCDIGP--RYLFTYNTMINGGVR------------CLCVGNIKMALHLHGLV 78
+ G + + ++ M G+R CL +++ +H V
Sbjct: 155 SWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHV 214
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ ++ ++ + +M+V+CG ++ A+ ++F M +
Sbjct: 215 IRAQLNANITVETAICNMYVRCGWLEGAK----------------------LVFDGMDAQ 252
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+ V+W ++ T+ L F + G L +++ + D + G +H
Sbjct: 253 NAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIH 312
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
S +V + +V VG+ L+D Y+KCG IES+ + +F +
Sbjct: 313 SHIVKLGXESEVSVGTPLVDFYVKCG--DIESAYR--------------------SFGRI 350
Query: 259 SRRNMISWMVLISAFSQAGVLEK-PRFF------------FFFVSLLSGCSHSGPVTKGK 305
S N +SW LIS FSQ+G LE + F F + S+ C+ + G
Sbjct: 351 SEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGS 410
Query: 306 HYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
K Y MV + G L A++ + + +P V W A++ H
Sbjct: 411 QAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESI-DEPDAVAWTAIISGYAYH 469
Query: 363 YNTKLAELVMRNLLQLDVK 381
N A R + V+
Sbjct: 470 GNAAEALGFFRRMQSYGVR 488
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 150/343 (43%), Gaps = 47/343 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +H K ++ ++ S IDM+ KC YA+ F + + CW
Sbjct: 389 CATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCW 448
Query: 122 KFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I + +F KMP R+ VSWNTMIS + + L F + G
Sbjct: 449 NSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHI 508
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ ++ A A++ LE G +H+ +V + GIE +I
Sbjct: 509 PGEITLSSVLLACANLCSLEMGRMVHAEIVKL----------------------GIEDNI 546
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+G AL MYA+ G + F M +N I+W ++ ++ G E+ F
Sbjct: 547 FMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIEN 606
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEA 336
F+++L CSH G V + HYF M + ++ CMVD+L +G L EA
Sbjct: 607 GIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEA 666
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++L+ ++ S+ W +LL AC ++ N ++ E + L +L+
Sbjct: 667 EELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELE 709
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 161/385 (41%), Gaps = 52/385 (13%)
Query: 16 IHAQLISTCLISS-IFLQLIDDDYRVF-----CDIGPRYLFTYNTMINGGVRCLCVGNIK 69
+H+ T +IS + +L D + VF C + P + T+I C+ G
Sbjct: 208 LHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVV----TLICVIKACVGAGEFD 263
Query: 70 MALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK------ 122
+A+ + GL VK F + S I ++++ G A F M + W
Sbjct: 264 LAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVY 323
Query: 123 ------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
+G R+L MP R+ VSW T+I+ + G E L + ++ G +
Sbjct: 324 ADLGDLYGARRVL---DAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNIS 380
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-C-------NGI 228
+++ SA A++ DL G +H+ + M S ++FV S LIDMY KC C N +
Sbjct: 381 CFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSL 440
Query: 229 -ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
E + +L++ Y+ G +A+ F M RN +SW +IS +++ +F+
Sbjct: 441 PEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFY 500
Query: 288 -------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSG 331
S+L C++ + G+ + K + D+ SG
Sbjct: 501 AMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSG 560
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALL 356
L ++++ +MP K + W A++
Sbjct: 561 DLDSSRRVFYQMPEKNN-ITWTAMV 584
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 44/251 (17%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV-------------KCGAVDYAES-AFL 111
G + + L LH + +D S+A + + + C A D A S +
Sbjct: 94 GCLPLVLSLHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFRDCVAADAASSFTYD 153
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-- 169
M++ + R L F MPE+ +VS+ TM+ L + G ++ +EL+
Sbjct: 154 FMVSEHVKAGDIASARRL--FYGMPEKSVVSYTTMVDALMKRG----SVRDAVELYERCP 207
Query: 170 ------------GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
GF + + L+ AF + P+ VV + + VG+G
Sbjct: 208 LHSVAFFTAMISGF-VRNELHKDAFPVFRKMLTCSVRPN----VVTLICVIKACVGAGEF 262
Query: 218 DMY-----LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
D+ L CN E SI++ +L+T+Y G A F+ M R+++SW L+
Sbjct: 263 DLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDV 322
Query: 273 FSQAGVLEKPR 283
++ G L R
Sbjct: 323 YADLGDLYGAR 333
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 148/336 (44%), Gaps = 63/336 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + LHG+V K + S I+M+ K G +D A
Sbjct: 231 CADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ------------- 277
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F++MP R LVSWN+M+ I +G+ + + F + G AT
Sbjct: 278 ---------LFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQ---ATM 325
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL-KCGCNGIESSIQIGKALVT 240
+ + D G S I Y+ +CG N + I I AL+
Sbjct: 326 VALLRACTDTGLGRQAES-----------------IHAYIHRCGFN---ADIIIATALLN 365
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFS-QAGVLEKPRFFFF------------ 287
+YA+ G ++ FE + R+ I+W +++ ++ A E + F
Sbjct: 366 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 425
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYT----CYFVCMVDLLGLSGLLGEAKKLIDEM 343
F LLS CSHSG V +GK YF M++ ++ CMVDLLG SG L +A +LI M
Sbjct: 426 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 485
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P +P+ +WGALLGAC + N +L + V LL LD
Sbjct: 486 PMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 521
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 44/274 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVY 189
+F +MP +DLVSWN+++S L+ G+ L F + G + + + SA A +
Sbjct: 176 LFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMG 235
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L+ G LH VV + G+ ++ +L+ MY + G
Sbjct: 236 ALDEGKSLHGVVVKL----------------------GMSGKAKVVNSLINMYGKLGFLD 273
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF-------------VSLLSGCS 296
A FE M R+++SW ++ + G EK F V+LL C+
Sbjct: 274 AASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACT 333
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE---AKKLIDEMPSKPTCVIWG 353
+G + + + + + + LL L LG ++ + +E+ + + W
Sbjct: 334 DTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR-IAWT 392
Query: 354 ALLGA----CCSHYNTKLAELVMRNLLQLDVKVF 383
A+L C KL +L+++ +++D F
Sbjct: 393 AMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTF 426
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-------------- 279
IG LV+MY + G + A F+ M ++++SW L+S S G L
Sbjct: 156 IGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTES 215
Query: 280 -EKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGE 335
+P +S++S C+ G + +GK + K + ++++ G G L
Sbjct: 216 GRQPN-EVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDA 274
Query: 336 AKKLIDEMPSKPTCVIWGALL 356
A +L +EMP + + V W +++
Sbjct: 275 ASQLFEEMPVR-SLVSWNSMV 294
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 147/333 (44%), Gaps = 51/333 (15%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII 126
HGLV + S ++ + I M+ C V A F + W K G +
Sbjct: 289 HGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHV 348
Query: 127 R-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+ + +F MP +D VSW+T+IS ++ + L F + G + + SA
Sbjct: 349 KDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISAC 408
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
++ LE G +H + + + + +G+ LI+MY+KCGC +E++++
Sbjct: 409 TNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGC--LEAALE------------ 454
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSL 291
AF +M + W +I + G++ K F F +
Sbjct: 455 --------AFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEITFTGV 506
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
LS C H+G V +G+H+F M + Y ++ CMVDLLG +G + EA+ +I MP
Sbjct: 507 LSACRHAGLVDEGRHFFKLM-QHRYQIVPNIRHYGCMVDLLGRAGYVKEAEDMIQSMPMS 565
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P WGALLGAC H ++ E V R L+ D
Sbjct: 566 PDVPAWGALLGACWKHGEYEVGERVGRKLVNRD 598
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/391 (20%), Positives = 141/391 (36%), Gaps = 68/391 (17%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRY-LF 50
AC S K + R++HA +S +++L+ + D RVF D GP +
Sbjct: 112 ACASRKDVIEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRVF-DAGPVWDAV 170
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
++NT++ V G++ A+ + + K + + S + + + G VD A
Sbjct: 171 SWNTILAAYVH---AGDVDQAVEVFAQMPK----RNATAVSSMVSLFGRRGMVDEARR-- 221
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+F RD+ +W MIS R+ E L F +
Sbjct: 222 --------------------VFDAAECRDIFTWTAMISCFERNDMFAEALHVFSCMRRER 261
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-GCNGIE 229
+ + L + SA A ++ G H V+ V V + LI MY C
Sbjct: 262 WHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAAR 321
Query: 230 SSIQIGK--------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
G+ +++ Y + G + A F M ++ +SW +IS Q
Sbjct: 322 RLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSD 381
Query: 282 PRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLG 328
F VS++S C++ + KGK + + Y V L+
Sbjct: 382 ALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLIN 441
Query: 329 L---SGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ G L A + + M K T W A++
Sbjct: 442 MYMKCGCLEAALEAFNIMEEKGT-PCWNAVI 471
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/441 (23%), Positives = 184/441 (41%), Gaps = 104/441 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLIST-----CLISSIFLQL------IDDDYRVFCDIGPRYL 49
++ C SL+++ + +IH Q++ T +SS+ + + +D ++F + + +
Sbjct: 480 LRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV 539
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++ MI G + C + + +H
Sbjct: 540 VSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQ 599
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ D S+ + + ++ +CG V A AF K+
Sbjct: 600 ACVSGYSDDLSVGNALVSLYARCGKVRDAYFAF----------------------DKIFS 637
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D +SWN++IS + G E L F ++ G ++S + A SA A+V +++ G +
Sbjct: 638 KDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQI 697
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ G +S ++ L+T+YA+ G+ A+ F
Sbjct: 698 HAMIIK----------------------TGHDSETEVSNVLITLYAKCGNIDDAERQFFE 735
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
M +N ISW +++ +SQ G K F FV +LS CSH G V +G
Sbjct: 736 MPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEG 795
Query: 305 KHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
YF +M + ++ C+VDLLG SGLL A++ ++EMP +P ++ LL AC
Sbjct: 796 IKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACI 855
Query: 361 SHYNTKLAELVMRNLLQLDVK 381
H N + E +LL+L+ K
Sbjct: 856 VHKNIDIGEFAASHLLELEPK 876
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 158/382 (41%), Gaps = 70/382 (18%)
Query: 20 LISTCLISSIFLQLIDDDYRVFCD-----IGPRYLFTYNTMINGGVRCLCVGNIKMALHL 74
L + L++ L +++ +++F I P FTY +++ C + + + +
Sbjct: 440 LWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQ-FTYPSILR---TCSSLRAVDLGEQI 495
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H V K F + ++ IDM+ K G +D+A L +F++
Sbjct: 496 HTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHA----------------------LKIFRR 533
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+ E+D+VSW MI+ +H E L F E+ + G ++ +A+A SA A + L G
Sbjct: 534 LKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQG 593
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H++ S D+ VG+ L+ +Y +C G + A A
Sbjct: 594 QQIHAQACVSGYSDDLSVGNALVSLYARC----------------------GKVRDAYFA 631
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS---GPVTK-------- 303
F+ + ++ ISW LIS F+Q+G E+ F +S +S GP
Sbjct: 632 FDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANV 691
Query: 304 --GKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
GK + K + T ++ L G + +A++ EMP K + W A+L
Sbjct: 692 KLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNE-ISWNAMLTG 750
Query: 359 CCSHYNTKLAELVMRNLLQLDV 380
H + A + ++ QL V
Sbjct: 751 YSQHGHGFKALSLFEDMKQLGV 772
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + +RD VSW M+S L++ G E + F ++ G + ++++ SA V
Sbjct: 227 VFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEF 286
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ G LH V+ SL+ +V CN ALVT+Y+ G+
Sbjct: 287 YKVGEQLHGLVLKQGFSLETYV------------CN----------ALVTLYSRLGNFIP 324
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A+ F M +R+ +S+ LIS SQ G +K F SLLS CS
Sbjct: 325 AEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSS 384
Query: 298 SGPVTKGKHYFTAMAK 313
G + GK + + K
Sbjct: 385 VGALLVGKQFHSYAIK 400
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 123/324 (37%), Gaps = 63/324 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V K+ LHGLV K F + + + + ++ + G AE F ML
Sbjct: 281 CTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAML------- 333
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+RD VS+N++IS L++ G+ + L F ++ + A+
Sbjct: 334 ---------------QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASL 378
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA +SV L G HS + S D+ + L+D+Y+KC S I+
Sbjct: 379 LSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKC------SDIKTAHEF--- 429
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------------FFF 288
F N++ W V++ A+ L E + F F +
Sbjct: 430 -------------FLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTY 476
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK--FTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPS 345
S+L CS V G+ T + K F + Y ++D+ G L A K+ +
Sbjct: 477 PSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKE 536
Query: 346 KPTCVIWGALLGACCSHYNTKLAE 369
K V W A++ H K AE
Sbjct: 537 KDV-VSWTAMIAGYAQH--EKFAE 557
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 74/363 (20%), Positives = 119/363 (32%), Gaps = 100/363 (27%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY +++G CL G LHG + K F ++ + + +D+++ G +D A
Sbjct: 70 TYLWLLDG---CLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGA---- 122
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+ +F +MP R L WN ++ L F +
Sbjct: 123 ------------------VTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEK 164
Query: 171 FGLSSMLYATAFSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
YA +H+R + +FV + LID+Y K NG
Sbjct: 165 VKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFK---NGFL 221
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+S A F+ + +R+ +SW+ ++S SQ+G E+ F
Sbjct: 222 NS-------------------AKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQM 262
Query: 287 ----------FFVSLLSGC-----------------------------------SHSGPV 301
F S+LS C S G
Sbjct: 263 HTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNF 322
Query: 302 TKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEM---PSKPTCVIWGALLGA 358
+ F AM + Y ++ L G +A +L +M KP CV +LL A
Sbjct: 323 IPAEQVFNAMLQRDEVSY-NSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSA 381
Query: 359 CCS 361
C S
Sbjct: 382 CSS 384
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 141/321 (43%), Gaps = 60/321 (18%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
HG+ K E +A + I+M+ +CG V A +MF +
Sbjct: 161 HGVAVKAGAAEHEYVAPTLINMYAECGDVRAAR----------------------VMFDR 198
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
M +VS+N MI+ R E L F E+ G +S+ + SA A + LE G
Sbjct: 199 MDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG 258
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H + M ++S +++ AL+ MYA+ GS + A
Sbjct: 259 RWIHDYIRKMR----------------------LDSLVKVNTALIDMYAKCGSLEDAIGV 296
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
F+ M R+ +W V++ A++ G + F F+ +L CSHSG V
Sbjct: 297 FQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMV 356
Query: 302 TKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
++G YF +M ++ ++ C+ DLL SG L A K IDE+P KPT ++W LL A
Sbjct: 357 SEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSA 416
Query: 359 CCSHYNTKLAELVMRNLLQLD 379
C H + + + V +L+LD
Sbjct: 417 CAGHGDVDMGKRVFERILELD 437
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 22/121 (18%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T T+I+ C +G +++ +H ++K S + + IDM+ KCG+++ A
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA---- 293
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+ +FQ M RD +W+ M+ HG+G E + F E+ G
Sbjct: 294 ------------------IGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQG 335
Query: 171 F 171
Sbjct: 336 M 336
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 193/419 (46%), Gaps = 66/419 (15%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLIS--SIFLQLIDDDYRV-----FCDI-----GPRY 48
+K C ++K L +AR++H+ ++ S ++ L+D + DI G +
Sbjct: 313 IKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQN 372
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE---------SIAKSSIDMHVK 99
+ ++ MING C+ G++ +A L +++ ++ S+A +H +
Sbjct: 373 VVSWTAMING---CIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQ 429
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
+Y ++ + + + L +F+ + ++D+VSW+ M++ + G
Sbjct: 430 VIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGA 489
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
FI++ HG + ++ A AS P+ V +G +
Sbjct: 490 TNIFIKMTMHGLKPNEFTISSVIDACAS------------------PTAGVDLGRQFHAI 531
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
+K C+ ++ + ALV+MYA GS + A FE + R+++SW ++S ++Q G
Sbjct: 532 SIKHRCH---DALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYS 588
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTC-YFVC 322
+K F F+S++ GC+H+G V +G+ YF +MA+ T T ++ C
Sbjct: 589 QKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYAC 648
Query: 323 MVDLLGLSGLLGEAKKLIDEM--PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MVDL +G L EA LI+ M P+ P ++W LLGAC H N +L +L LL L+
Sbjct: 649 MVDLYSRAGKLDEAMSLIEGMSFPAGP--MVWRTLLGACKVHKNVELGKLAAEKLLSLE 705
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 107/254 (42%), Gaps = 38/254 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ MP+R++V+W ++++ + G + + F + G +S+ +A+ S AS
Sbjct: 161 VFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGM 220
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
++ G +H++ V VFV + L++MY KCG ++
Sbjct: 221 VDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGL----------------------VEE 258
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFFF------------FFVSLLSGCSH 297
A + F M R+M+SW L++ G LE + F + +++ C++
Sbjct: 259 ARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCAN 318
Query: 298 SGPVTKGKHYFTAMAKFTYTCY---FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ + +++ K + Y ++D +G LG A + M V W A
Sbjct: 319 IKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTA 378
Query: 355 LLGACCSHYNTKLA 368
++ C + + LA
Sbjct: 379 MINGCIQNGDVPLA 392
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 145/321 (45%), Gaps = 51/321 (15%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---GIIR------LLIMFQKMPERD 139
+ + I M+ K G A F M + + W G +R MF KMPERD
Sbjct: 111 VGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERD 170
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
L+SW MI+ + G+ E L F E+ G + A +A ++ L +G +H
Sbjct: 171 LISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHR 230
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
V+ + +V V + LID+Y +CGC +E + Q+ F M
Sbjct: 231 YVLSQDFKNNVRVSNSLIDLYCRCGC--VEFARQV--------------------FYNME 268
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
+R ++SW +I F+ G + +F F L+ CSH G V +G
Sbjct: 269 KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLR 328
Query: 307 YFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
YF M K Y ++ C+VDL +G L +A KL+ MP KP V+ G+LL AC +
Sbjct: 329 YFQIM-KCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSN 387
Query: 362 HYNT-KLAELVMRNLLQLDVK 381
H N LAE +M++L L+VK
Sbjct: 388 HGNNIVLAERLMKHLTDLNVK 408
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 64/231 (27%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVR-------------------------------- 61
+D+ ++F + R L ++ MING V+
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNA 215
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + L +H V F ++ ++ S ID++ +CG V++A
Sbjct: 216 CTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQ------------- 262
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F M +R +VSWN++I +G E+L F ++ GF ++ + A
Sbjct: 263 ---------VFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGA 313
Query: 182 FSARASVYDLEWG----------PHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
+A + V +E G + R+ H +D++ +G ++ LK
Sbjct: 314 LTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALK 364
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 107/268 (39%), Gaps = 35/268 (13%)
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSW + I++LTR+G E F ++ G + + + S D G
Sbjct: 37 VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSG---CGDFTSGSEALGD 93
Query: 201 VVH---MEPSLD---VFVGSGLIDMYLKCGC--------NGIESSIQIG-KALVTMYAEG 245
++H + LD V VG+ +I MY K G + +E + ++ Y
Sbjct: 94 LLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRS 153
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
G A F+ M R++ISW +I+ F + G E+ +F ++ L
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213
Query: 293 SGCSHSGPVTKG--KHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
+ C++ G ++ G H + F ++DL G + A+++ M K T
Sbjct: 214 NACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNM-EKRTV 272
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQ 377
V W +++ ++ N + + R + +
Sbjct: 273 VSWNSVIVGFAANGNAHESLVYFRKMQE 300
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 181/423 (42%), Gaps = 68/423 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+KA S P+ R +H+ ++ I ++ LID D +VF ++ R
Sbjct: 161 IKALSSSGLTPL-RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDT 219
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++N+ + VR G + A + + VS ++ +D + K G ++ A
Sbjct: 220 VSWNSAMAAMVR---QGEVASARRMFDEMPDKDTVSWNTV----LDGYTKAGKMEDAFEL 272
Query: 110 FLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M ++ W K G I + ++F KMP ++LV+W M+S ++G E
Sbjct: 273 FQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAG 332
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F ++ L + +A A L G +H V + V + +IDM+
Sbjct: 333 RLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMF 392
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL-MSRRNMISWMVLISAFSQAGVL 279
KCGC +AD F+ ++ ++ +SW +I F+ G
Sbjct: 393 CKCGC----------------------VNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHG 430
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVC 322
+K FF +++LS C+H G V +G+ +F+ M + ++ C
Sbjct: 431 DKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGC 490
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
M+DLLG GL+ EA LI MP P VIWG+LL AC H N + AE+ + L +L
Sbjct: 491 MIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSN 550
Query: 383 FGS 385
G+
Sbjct: 551 AGN 553
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/438 (25%), Positives = 189/438 (43%), Gaps = 70/438 (15%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-----------LQLIDDDYRVFCDIGPRYL 49
+K G + + K+HA ++ T L + L L++ +VF ++ R
Sbjct: 115 LKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDA 174
Query: 50 FTYNTMINGGVRC---------------------------------LCVGNIKMALHLHG 76
++N MI+G VRC + N+++ +H
Sbjct: 175 VSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHD 234
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI------ 130
+ ++ + + +DM+ KCG V A F M ++ CW + +I
Sbjct: 235 YIASELDLT-TIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQ 293
Query: 131 ---MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F++ P RD+V W MI+ + ET+ F E+ G + T + A
Sbjct: 294 ARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQ 353
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
LE G +H+ + +D VG+ LI+MY KCGC IE S +I L E +
Sbjct: 354 SGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGC--IEKSFEIFNGL----KEKDT 407
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHY 307
T + L + L A G+ KP FV++LS CSH+G V +G+
Sbjct: 408 TSWTSIICGLAMNGKPSEALELFKAMQTCGL--KPD-DITFVAVLSACSHAGLVEEGRKL 464
Query: 308 FTAMAKFTYT----CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI---WGALLGACC 360
F +M+ + ++ C +DLLG +GLL EA++L+ ++P++ +I +GALL AC
Sbjct: 465 FHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACR 524
Query: 361 SHYNTKLAELVMRNLLQL 378
++ N + E + L ++
Sbjct: 525 TYGNIDMGERLATALAKV 542
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 116/280 (41%), Gaps = 51/280 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+TY ++ G C+G ++ +H V K D + S +DM+ + G V+
Sbjct: 109 YTYPYVLKG---IGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVE----G 161
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F ++ F++MP+RD VSWN MIS R E + + +W
Sbjct: 162 FTQV------------------FEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTE 203
Query: 170 -GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
+ + SA A + +LE G +H + E L +G+ L+DMY KCG +
Sbjct: 204 SNEKPNEATVVSTLSACAVLRNLELGKEIHDYIAS-ELDLTTIMGNALLDMYCKCGHVSV 262
Query: 229 ESSI---------QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
I ++VT Y G +A FE R+++ W +I+ + Q
Sbjct: 263 AREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRF 322
Query: 280 E--------------KPRFFFFFVSLLSGCSHSGPVTKGK 305
E KP F V+LL+GC+ SG + +GK
Sbjct: 323 EETIALFGEMQIRGVKPD-KFIVVTLLTGCAQSGALEQGK 361
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/439 (23%), Positives = 176/439 (40%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL-----ISSIFLQL------IDDDYRVFCDIGPRYL 49
+K C L L + +IH+Q+I T + S+ + + +D + + + +
Sbjct: 480 LKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 539
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++ TMI G G+R C + +K +H
Sbjct: 540 VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 599
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
F SD + + ++ KCG + E A+L F++
Sbjct: 600 ACVSGFSSDLPFQNALVTLYSKCGNI---EEAYL-------------------AFEQTEA 637
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D ++WN ++S + G E L F + G ++ + +A A + +++ G +
Sbjct: 638 GDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQV 697
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ + G +S ++ A+++MYA+ GS A F
Sbjct: 698 HAVITK----------------------TGYDSETEVCNAIISMYAKCGSISDAKKQFLE 735
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+S +N +SW +I+A+S+ G + F V +LS CSH G V KG
Sbjct: 736 LSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 795
Query: 305 KHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
YF +M ++VC+VD+L +GLL AK I EMP +P ++W LL AC
Sbjct: 796 IEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACV 855
Query: 361 SHYNTKLAELVMRNLLQLD 379
H N ++ E +LL+L+
Sbjct: 856 VHKNMEIGEFAAHHLLELE 874
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 151/354 (42%), Gaps = 73/354 (20%)
Query: 33 LIDD---DYRVFC-----DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFV 84
L+DD +R+F +I P +TY +++ C+ +G++++ +H + K F
Sbjct: 450 LLDDLRNSFRIFRQMQIEEIVPNQ-YTYPSILK---TCIRLGDLELGEQIHSQIIKTSFQ 505
Query: 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144
+ + IDM+ K G +D A W +LI F +D+VSW
Sbjct: 506 LNAYVCSVLIDMYAKLGKLDTA--------------WD-----ILIRFAG---KDVVSWT 543
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
TMI+ T++ F + L TF ++ + G + A SA A + L+ G +H++
Sbjct: 544 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC-- 601
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
+G S + ALVT+Y++ G+ ++A LAFE + I
Sbjct: 602 --------------------VSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNI 641
Query: 265 SWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAM 311
+W L+S F Q+G E+ R F F F S + S + + +GK +
Sbjct: 642 AWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVI 701
Query: 312 AKFTYTCYF-VC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
K Y VC ++ + G + +AKK E+ K V W A++ A H
Sbjct: 702 TKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNE-VSWNAMINAYSKH 754
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 137/347 (39%), Gaps = 67/347 (19%)
Query: 9 SLPIARKIHAQLI------STCLISSI-----FLQLIDDDYRVFCDIGPRYLFTYNTMIN 57
SL RK+H+Q++ + CL + F +D +VF ++ R +FT+N MI
Sbjct: 83 SLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIK 142
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV--DYAESAFLRML- 114
G + L G + +E ++ + G+V D E R++
Sbjct: 143 ELASRSLSGKV---FCLFGRMVNENVTPNEGTFSGVLEA-CRGGSVAFDVVEQIHARIIY 198
Query: 115 ----------NP--SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
NP L+ + R +F + +D SW MIS L+++ E +
Sbjct: 199 QGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRL 258
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F +++ G + +++ SA + LE G LH V+ + S D +V
Sbjct: 259 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV---------- 308
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
CN ALV++Y GS A+ F MS+R+ +++ LI+ SQ G EK
Sbjct: 309 --CN----------ALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 356
Query: 283 RFFF-------------FFVSLLSGCSHSGPVTKGK--HYFTAMAKF 314
F SL+ CS G + G+ H +T F
Sbjct: 357 MELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGF 403
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/328 (19%), Positives = 123/328 (37%), Gaps = 95/328 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL------------QLIDDDYRVFCDIGPRY 48
+ AC ++SL I ++H ++ S ++ LI ++ +F ++ R
Sbjct: 278 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEH-IFSNMSQRD 336
Query: 49 LFTYNTMING--------------------------------GVRCLCVGNIKMALHLHG 76
TYNT+ING V C G + LH
Sbjct: 337 AVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHA 396
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K F S++ I + ++++ KC ++ A + FL ++ W +M
Sbjct: 397 YTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWN-------VM----- 444
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
LV++ + + R+ F F ++ + Y + + DLE G
Sbjct: 445 ---LVAYGLLDDL--RNSFRI-----FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 494
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+HS+++ L+ +V S LIDMY K G K D A++
Sbjct: 495 IHSQIIKTSFQLNAYVCSVLIDMYAKLG-------------------------KLDTAWD 529
Query: 257 LMSR---RNMISWMVLISAFSQAGVLEK 281
++ R ++++SW +I+ ++Q +K
Sbjct: 530 ILIRFAGKDVVSWTTMIAGYTQYNFDDK 557
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/364 (20%), Positives = 142/364 (39%), Gaps = 70/364 (19%)
Query: 39 RVFCD-----IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
R+FCD I P + ++++++ C + ++++ LHGLV K F SD + +
Sbjct: 257 RLFCDMYVLGIMPT-PYAFSSVLSA---CKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 312
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+ ++ G++ AE +F M +RD V++NT+I+ L++
Sbjct: 313 VSLYFHLGSLISAEH----------------------IFSNMSQRDAVTYNTLINGLSQC 350
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G+G + + F + G S A+ A +S L G LH+ +
Sbjct: 351 GYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKL--------- 401
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA- 272
G S+ +I AL+ +YA+ + A F N++ W V++ A
Sbjct: 402 -------------GFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAY 448
Query: 273 ------------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY- 319
F Q + E + + S+L C G + G+ + + K ++
Sbjct: 449 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA 508
Query: 320 FVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+VC ++D+ G L A ++ K V W ++ + A R +L
Sbjct: 509 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDV-VSWTTMIAGYTQYNFDDKALTTFRQMLD 567
Query: 378 LDVK 381
++
Sbjct: 568 RGIR 571
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 81/397 (20%), Positives = 144/397 (36%), Gaps = 68/397 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+K L++L R+ IS + Q D C I P + T ++ G
Sbjct: 20 LKTRTVLRTLCQIRRASFTAISVSISEDESFQENGIDSVENCGIRPNHQ-TLKWLLEG-- 76
Query: 61 RCLCV-GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
CL G++ LH + K F ++ +++ +D ++ G +D A
Sbjct: 77 -CLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA------------- 122
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
L +F +MPER + +WN MI L + C F + N + ++
Sbjct: 123 ---------LKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFS 173
Query: 180 TAFSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
A R + +H+R+++ G+ S + L
Sbjct: 174 GVLEACRGGSVAFDVVEQIHARIIYQ----------------------GLGKSTIVCNPL 211
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------ 285
+ +Y+ G +A F+ + ++ SW+ +IS S+ +E R F
Sbjct: 212 IDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTP 271
Query: 286 FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-YFVC--MVDLLGLSGLLGEAKKLIDE 342
+ F S+LS C + G+ + K ++ +VC +V L G L A+ +
Sbjct: 272 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSN 331
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
M + + G Y K EL R +QLD
Sbjct: 332 MSQRDAVTYNTLINGLSQCGYGEKAMELFKR--MQLD 366
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 182/439 (41%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC L + IH+ + T +F++ + D ++VF D+ + +
Sbjct: 111 LKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNV 170
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++ MI G G+R C +G+++ +
Sbjct: 171 VSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRC 230
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+++ + +A S +DM+ KCG+++ A +F M E
Sbjct: 231 MRECGLSRNVFVATSLVDMYTKCGSMEEAR----------------------FVFDGMVE 268
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D+V W+ MI +G E + F E+ A S+ AS+ LE G
Sbjct: 269 KDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWA 328
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
+ + E + +G+ LID Y KC GS ++A +++
Sbjct: 329 KGLMNYEEFLSNPVLGTSLIDFYAKC----------------------GSMEEALGVYKM 366
Query: 258 MSRRNMISWMVLISA-------------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKG 304
M ++ + + +IS F Q G P FV LL GC+H+G V G
Sbjct: 367 MKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDG 426
Query: 305 KHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+HYF +M+ F+ T ++ CMVDLL +G L EA LI MP K ++WG+LLG C
Sbjct: 427 RHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCR 486
Query: 361 SHYNTKLAELVMRNLLQLD 379
H T+LAE V++ L++L+
Sbjct: 487 LHRETQLAEHVLKQLIELE 505
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 144/336 (42%), Gaps = 50/336 (14%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G++ + +H + K S+ S+ S IDM+ KCG ++ AE R F + +
Sbjct: 454 GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR------FFQRTNV 507
Query: 126 IRLLIMFQKMPERDL----VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ +KM + L VSWN++IS + F + G YAT
Sbjct: 508 SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATV 567
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A++ G +H++V+ E DV++ S L+DMY KC
Sbjct: 568 LDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKC------------------ 609
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G + L FE RR+ ++W +I ++ G E+ F F
Sbjct: 610 ----GDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 665
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+S+L C+H G + KG YF M + ++ MVD+LG SG + A +LI EMP
Sbjct: 666 ISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 725
Query: 345 SKPTCVIWGALLGACCSHYNT-KLAELVMRNLLQLD 379
+ VIW LLG C H N ++AE LL+LD
Sbjct: 726 FEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLD 761
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 139/346 (40%), Gaps = 69/346 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C+ + + + +HG+V + +D A + +DM+ K + ES
Sbjct: 148 CSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAK--GKRFVES------------- 192
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +FQ +PE++ VSW+ +I+ ++ L F E+ G+S +YA+
Sbjct: 193 -------LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASV 245
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ A++ +L G LH+ + + + D V + +DMY KC
Sbjct: 246 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKC------------------ 287
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLL 292
+ Q A + F+ N S+ +I+ +SQ K F F L
Sbjct: 288 ----DNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 343
Query: 293 SG----CSHSGPVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
SG C+ +++G + K + + C +D+ G L EA ++ DEM
Sbjct: 344 SGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 403
Query: 346 KPTCVIWGALLGACCSHYNTKLAELV------MRNLLQLDVKVFGS 385
+ V W A++ A N K E + +R+ ++ D FGS
Sbjct: 404 RDA-VSWNAIIAA--HEQNGKGYETLFLFVSMLRSRIEPDEFTFGS 446
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 23/176 (13%)
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+++ F MP RD+VSWN+M+S ++G +++ F+++ G +A
Sbjct: 87 NMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILK 146
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
+ + D G +H VV + DV S L+DMY K GK V
Sbjct: 147 VCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAK------------GKRFV---- 190
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFFFFFVSLLSGCSHS 298
++ F+ + +N +SW +I+ Q +L +FF + +G S S
Sbjct: 191 ------ESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQS 240
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 163/390 (41%), Gaps = 89/390 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD----------------- 104
C + + + ++H ++ K F SD I + I M+ KCG V+
Sbjct: 138 CGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVM 197
Query: 105 ------YAESAFLRM------------LNPSLFCWKFGIIRL-------------LIMFQ 133
YA+ F+ + P++ W I +M
Sbjct: 198 NAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTA 257
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
E D+VSW ++IS ++ E F E+ + GF SS+ ++ A +V +L
Sbjct: 258 NGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRH 317
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H + + G+E + + ALV MYA+ G +A +
Sbjct: 318 GKEIHGYAMVI----------------------GVEKDVYVRSALVDMYAKCGYISEAKI 355
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F +M RN ++W LI ++ G + F F ++L+ CSH+G
Sbjct: 356 LFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGM 415
Query: 301 VTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
V G+ F M + Y ++ CMVDLLG +G L EA LI MP +P +WGAL
Sbjct: 416 VELGESLFRKMQE-KYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGAL 474
Query: 356 LGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
LGAC +H N +LAE+ +L +L+ + GS
Sbjct: 475 LGACRNHGNIELAEVAAEHLFELEPESPGS 504
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 103/264 (39%), Gaps = 55/264 (20%)
Query: 38 YRVFCDIGPRYLF-----TYNTMIN--GGVRCLCVGNIKMALHLH----GLVKKFYFVSD 86
YRV+ +I F TY I+ R L G ALH H GL + YF
Sbjct: 11 YRVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGR---ALHAHLVIIGLARLTYF--- 64
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTM 146
A + + +CG + A +F K+P ++ W +
Sbjct: 65 ---AAKLMSFYTECGQLSNARK----------------------LFDKIPNTNIRRWIVL 99
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
R GF E L F E+ G + + + A + D G ++H+ ++
Sbjct: 100 TGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSF 159
Query: 207 SLDVFVGSGLIDMYLKCG-----CNG----IESSIQIGKALVTMYAEGGSTQKADLAFEL 257
D ++ S LI MY KCG C ++ + + A+V+ YA+ G +A +
Sbjct: 160 ESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQK 219
Query: 258 MS----RRNMISWMVLISAFSQAG 277
M + N++SW LI+ FSQ G
Sbjct: 220 MQQAGVKPNVVSWNTLIAGFSQVG 243
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 152/336 (45%), Gaps = 60/336 (17%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G +++ H K + S+A + I M+ +CG D A F G
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIF-------------G 479
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+++ +D+V+W+ +IS + G + L + ++ G +S + S+
Sbjct: 480 MVKT---------KDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISS 530
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ LE G +HS V + D+ + + L+DMY+KCG GI +
Sbjct: 531 CANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKM------------ 578
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSL 291
F+ M R++++W V+IS + G ++ + F F+++
Sbjct: 579 ----------FDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAI 628
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
LS C H+G V KG+ FT M +++ ++ CMVDLLG SG L EA+ ++ MP +P
Sbjct: 629 LSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPD 688
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWG LLGAC H N ++ V + D + G
Sbjct: 689 GGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDG 724
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 44/226 (19%)
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
TM +G C +G + + LHG K S+ S M+ KC + + A
Sbjct: 216 RTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDAR----- 270
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I+F ++PE+DLVSW ++I R G + + F+ + G
Sbjct: 271 -----------------ILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQ 313
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
++ + + + + G H+ +V V +G+ LI MY KC I +++
Sbjct: 314 PDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATV 373
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
F ++ +R+ SW ++ A+ +AG+
Sbjct: 374 ----------------------FRMLHQRDTDSWSSMVVAYCKAGL 397
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 56/268 (20%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDE---SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
+G + + +H +F + + ++A S + M+ +CG+V A
Sbjct: 120 LGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDA--------------- 164
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+RL F +MPERD+V+W +IS +G E L + + + A
Sbjct: 165 ----VRL---FDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRM---------VRSAGD 208
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
AR + +E G L + V E S VG+ L +K G S + +L +M
Sbjct: 209 GGARPNSRTMESG--LEACGVLGELS----VGTCLHGFGVKAGVGHCPSVVS---SLFSM 259
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS----------- 290
Y + ST+ A + F + ++++SW LI A+ +AG EK F +
Sbjct: 260 YTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVI 319
Query: 291 --LLSGCSHSGPVTKGKHYFTAMAKFTY 316
LL+G + V GK + A+ + +
Sbjct: 320 SCLLAGLGNDAKVRGGKTFHAAIVRRNF 347
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 155/334 (46%), Gaps = 49/334 (14%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF------- 123
ALH H K + ++D + + IDM+ KCG +DYA F +M +L W
Sbjct: 111 ALHTHAF-KHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMK 169
Query: 124 --GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ L +F K+P +++VSW +I + E L F E+ G +
Sbjct: 170 NGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAI 229
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ L G +H V+ E +V V + LIDMY +CGC IE + Q+
Sbjct: 230 ISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGC--IELARQV------- 280
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
F+ MS+RN++SW +I F+ G+ +K FF +
Sbjct: 281 -------------FDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSY 327
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMP 344
S L+ CSH+G + +G F + + ++ C+VDL +G L EA +I +MP
Sbjct: 328 TSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMP 387
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P V+ G+LL AC + + +LAE VM+ ++L
Sbjct: 388 MMPNEVVLGSLLAACRTQGDVELAEKVMKYQVEL 421
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + L +H LV K F + + S IDM+ +CG ++ A
Sbjct: 233 CANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQ------------- 279
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F M +R+LVSWN++I +G + L F + G + + Y +A
Sbjct: 280 ---------VFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSA 330
Query: 182 FSA 184
+A
Sbjct: 331 LTA 333
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 155/349 (44%), Gaps = 56/349 (16%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT +T++ C +IK + +HG K F +D + S IDM+ C +DY+
Sbjct: 488 FTLSTVLPIFAEC---ADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYS--- 541
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ +F + D V WN+M++ ++G E L F +
Sbjct: 542 -------------------MKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQA 582
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---- 225
G + +++ A ++ L G LH+ ++ + ++F+ S LIDMY KCG
Sbjct: 583 GVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIA 642
Query: 226 ----NGIESSIQIG-KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
NGI+S + A++ YA G T +A + FE M N+
Sbjct: 643 RRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNV----------------- 685
Query: 281 KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEA 336
KP F +++L+ CSH+G V G YF +M+ + + D LG +G L EA
Sbjct: 686 KPNHITF-LAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEA 744
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
I EM KPT +W LL AC H NT LAE V + + +L+ K GS
Sbjct: 745 YNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGS 793
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 35/252 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M ERD VSWNT+I H E L E+W GF + +T A D
Sbjct: 443 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 502
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-----------GKALV 239
++ G +H + DVFVGS LIDMY C ++ S+++ +++
Sbjct: 503 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMY--ANCTQMDYSMKVFDSFSDCDAVLWNSML 560
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299
YA+ GS ++A F R M+ QAGV P F SL+ +
Sbjct: 561 AGYAQNGSVEEALGIF-----RRML----------QAGVRPVP---VTFSSLIPAFGNLS 602
Query: 300 PVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ GK H + A+F + ++D+ G + A+++ + + S P V W A++
Sbjct: 603 LLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQS-PDIVSWTAMI 661
Query: 357 GACCSHYNTKLA 368
H T A
Sbjct: 662 MGYALHGPTTEA 673
>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Glycine max]
Length = 815
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 147/339 (43%), Gaps = 64/339 (18%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
R F + T+++ L N++M +H +S+ + S +DM+ KC
Sbjct: 339 RRQFPFATLLSIAANSL---NLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCD----- 390
Query: 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
KFG + F + + V W +IS + G + L F+E+
Sbjct: 391 ---------------KFGEANRI--FADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEM 433
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
G S YA+ A A++ L G LHSR++ +VF GS L+DMY KCG
Sbjct: 434 HRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCG-- 491
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
I+ ++Q+ F+ M RN +SW LISA++Q G F
Sbjct: 492 SIKEALQM--------------------FQEMPVRNSVSWNALISAYAQNGDGGHALRSF 531
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGL 329
F+S+L CSH G V +G YF +M + ++ MVD+L
Sbjct: 532 EQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCR 591
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
SG EA+KL+ MP +P ++W ++L +C H N +LA
Sbjct: 592 SGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELA 630
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 139/333 (41%), Gaps = 65/333 (19%)
Query: 43 DIGPR-YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG 101
D+G R FT+ ++ G++ + +I+ +H V K FV + +A + +D + K
Sbjct: 233 DLGFRPSEFTFAAVLTAGIQ---MDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHD 289
Query: 102 AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
I+ +F +MPE D +S+N +I+ +G E+L
Sbjct: 290 R----------------------IVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLE 327
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F EL F +AT S A+ +LE G +HS+ + + +V VG+ L+DMY
Sbjct: 328 LFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYA 387
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
KC G +A+ F ++ ++ + W LIS + Q G+ E
Sbjct: 388 KCDKFG----------------------EANRIFADLAHQSSVPWTALISGYVQKGLHED 425
Query: 282 PRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVD 325
F + S+L C++ +T GK + + + + +VD
Sbjct: 426 GLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVD 485
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+ G + EA ++ EMP + + V W AL+ A
Sbjct: 486 MYAKCGSIKEALQMFQEMPVRNS-VSWNALISA 517
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 39/242 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ M E+D V++N +++ ++ GF + + F ++ + GF S +A +A + D
Sbjct: 196 LFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDD 255
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+E+G +HS VV +VFV + L+D Y K I + L
Sbjct: 256 IEFGQQVHSFVVKCNFVWNVFVANALLDFYSK------HDRIVEARKL------------ 297
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEK-------------PRFFFFFVSLLSGCSH 297
F M + IS+ VLI+ + G +E+ R F F +LLS ++
Sbjct: 298 ----FYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAAN 353
Query: 298 SGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
S + G+ + A+ + V +VD+ GEA ++ ++ + + V W A
Sbjct: 354 SLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSS-VPWTA 412
Query: 355 LL 356
L+
Sbjct: 413 LI 414
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 110/268 (41%), Gaps = 71/268 (26%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYLFT 51
A SL +L + R+IH+Q I T IS + + L+D + R+F D+ +
Sbjct: 351 AANSL-NLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVP 409
Query: 52 YNTMINGGVR--------------------------------CLCVGNIKMALHLHGLVK 79
+ +I+G V+ C + ++ + LH +
Sbjct: 410 WTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRII 469
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
+ +S+ + +DM+ KCG++ A L MFQ+MP R+
Sbjct: 470 RSGCLSNVFSGSALVDMYAKCGSIKEA----------------------LQMFQEMPVRN 507
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH- 198
VSWN +IS ++G G L +F ++ + G +S+ + + A + +E G
Sbjct: 508 SVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFN 567
Query: 199 --SRVVHMEPSLDVFVGSGLIDMYLKCG 224
++V +EP + + + ++DM + G
Sbjct: 568 SMTQVYKLEPRREHY--ASMVDMLCRSG 593
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 49/255 (19%), Positives = 96/255 (37%), Gaps = 41/255 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M +R +V+W +I +H E F ++ HG + AT S
Sbjct: 95 LFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFES 154
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ +H VV + + V + L+D Y K G+ +
Sbjct: 155 VNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHL------------------ 196
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
F+ M+ ++ +++ L++ +S+ G FF F ++L+
Sbjct: 197 ----FKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQ 252
Query: 298 SGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ G+ H F F + + ++D + EA+KL EMP + + +
Sbjct: 253 MDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNV 311
Query: 355 LLGACCSHYNTKLAE 369
L+ CC+ +N ++ E
Sbjct: 312 LI-TCCA-WNGRVEE 324
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 141/332 (42%), Gaps = 60/332 (18%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C+ ++K +H V K + + S M+ KCG V A+
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK---------------- 277
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
I+F KM +L+ WN MIS ++G+ E + F E+ N ++ +A S
Sbjct: 278 ------ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A V LE ++ V + DVF+ S LIDM+ KC
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC-------------------- 371
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
GS + A L F+ R+++ W +I + G + + F+
Sbjct: 372 --GSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LL C+HSG V +G +F MA ++ C++DLLG +G L +A ++I MP +P
Sbjct: 430 LLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQP 489
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WGALL AC H + +L E + L +D
Sbjct: 490 GVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 100/253 (39%), Gaps = 39/253 (15%)
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
C + G R + +PER +VSW ++S ++G E L F + +
Sbjct: 167 CRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALV 226
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ +A + DL+ G +H+ VV M G+E + +L
Sbjct: 227 SVLNAFTCLQDLKQGRSIHASVVKM----------------------GLEIEPDLLISLN 264
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
TMYA+ G A + F+ M N+I W +IS +++ G + F
Sbjct: 265 TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTI 324
Query: 288 -FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLLGEAKKLIDEM 343
S +S C+ G + + + + + + Y F+ ++D+ G + A+ + D
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384
Query: 344 PSKPTCVIWGALL 356
+ V+W A++
Sbjct: 385 LDR-DVVVWSAMI 396
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 104/264 (39%), Gaps = 31/264 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +P + WN +I +R+ + L + + S + A + +
Sbjct: 75 VFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH 134
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----------GCNGIESSIQIGKALV 239
L+ G +H++V + DVFV +GLI +Y KC G E +I A+V
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194
Query: 240 TMYAEGGSTQKADLAFELMSRRNM-ISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCS-H 297
+ YA+ G +A F M + ++ W+ L+S + F L G S H
Sbjct: 195 SAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNA---------FTCLQDLKQGRSIH 245
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ V G + T Y C G + AK L D+M S P ++W A++
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKC--------GQVATAKILFDKMKS-PNLILWNAMIS 296
Query: 358 ACCSHYNTKLAELVMRNLLQLDVK 381
+ + A + ++ DV+
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVR 320
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
++ MIN VR C VG+++ A ++ V + + D I+ + IDM K
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGII 126
CG+V+ A F R L+ + W I+
Sbjct: 371 CGSVEGARLVFDRTLDRDVVVWSAMIV 397
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 152/336 (45%), Gaps = 60/336 (17%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G +++ H K + S+A + I M+ +CG D A F G
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIF-------------G 479
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+++ +D+V+W+ +IS + G + L + ++ G +S + S+
Sbjct: 480 MVKT---------KDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISS 530
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ LE G +HS V + D+ + + L+DMY+KCG GI +
Sbjct: 531 CANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKM------------ 578
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSL 291
F+ M R++++W V+IS + G ++ + F F+++
Sbjct: 579 ----------FDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAI 628
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
LS C H+G V KG+ FT M +++ ++ CMVDLLG SG L EA+ ++ MP +P
Sbjct: 629 LSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPD 688
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWG LLGAC H N ++ V + D + G
Sbjct: 689 GGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDG 724
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM +G C +G + + LHG K S+ S M+ KC + + A
Sbjct: 217 TMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDAR------ 270
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
I+F ++PE+DLVSW ++I R G + + F+ + G
Sbjct: 271 ----------------ILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
++ + + + + G H+ +V V +G+ LI MY KC I +++
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATV- 373
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
F ++ +R+ SW ++ A+ +AG+
Sbjct: 374 ---------------------FRMLHQRDTDSWSSMVVAYCKAGL 397
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 56/268 (20%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDE---SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
+G + + +H +F + + ++A S + M+ +CG+V A
Sbjct: 120 LGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDA--------------- 164
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+RL F +MPERD+V+W +IS +G E L + + + A
Sbjct: 165 ----VRL---FDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRM---------VRSAGD 208
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
AR + +E G L + V E S VG+ L +K G S + +L +M
Sbjct: 209 GGARPNSRTMESG--LEACGVLGELS----VGTCLHGFGVKAGVGHCPSVVS---SLFSM 259
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS----------- 290
Y + ST+ A + F + ++++SW LI A+ +AG EK F +
Sbjct: 260 YTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVI 319
Query: 291 --LLSGCSHSGPVTKGKHYFTAMAKFTY 316
LL+G + V GK + A+ + +
Sbjct: 320 SCLLAGLGNDAKVRGGKTFHAAIVRRNF 347
>gi|297794367|ref|XP_002865068.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
lyrata]
gi|297310903|gb|EFH41327.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
lyrata]
Length = 659
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 183/414 (44%), Gaps = 80/414 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLI------STCLISSIFLQLID-----DDYRVFCDIGPRYL 49
+KAC L+ + ++IH +I S C+++S+ + D +F + R +
Sbjct: 195 LKACARLRQVKYGKEIHTHVIVRGSDASLCVVNSLINMYTECGEMHDGVHLFESMSERDV 254
Query: 50 FTYNTMING----GVRCLCVGN-IKMALHLHGLVKKFYFVSDE-SIAKSSIDMHVKCGAV 103
F++ T+I+ G V +K+ + ++ + D S++ S + M+ CG +
Sbjct: 255 FSWTTLIDAYSQMGQEEKAVATFLKIEIFRRTSQWTYFCLGDSLSVSNSMMKMYSTCGKL 314
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
D A ++FQ M RD+++W+T+I ++ G G E F
Sbjct: 315 DSAS----------------------VLFQGMRRRDIITWSTIIGGYSQAGLGEEVFMCF 352
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
+ G + A+ S ++ LE G +H+ + +YL
Sbjct: 353 SWMRQAGPKPTDPALASLLSVSGTMAVLEQGRQVHA-----------------LALYL-- 393
Query: 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
G+E + I AL+ MY++ GS ++A FE +++S +I+ +++ G ++
Sbjct: 394 ---GLEQNSTIRSALINMYSKCGSIEEASKIFEETDTDDIVSLTAMINGYAEHGNTKEAI 450
Query: 284 FFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVD 325
F F+S+L+ CSHSG + G YF M Y ++ CMVD
Sbjct: 451 DLFEKSLKVGLRPDTVTFISVLTACSHSGQLDLGFRYFNLMQD-EYNIRPVKEHYGCMVD 509
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LL +G L +A+K+I+EMP K V+W LL AC + +T+ +L+LD
Sbjct: 510 LLCRAGRLSDAEKMINEMPWKKDDVVWTTLLNACKAKGDTERGRRAAERILELD 563
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS-MLYATAFSARASVY 189
+F +M R+ V+W ++S + G E L F E+ + GLS +ATA A A +
Sbjct: 144 IFTEMQFRNTVTWTAIVSGMVEAGRHKEGLTYFSEM-SRSKGLSDDFAFATALKACARLR 202
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+++G +H+ V+ + V + LI+MY +CG + G L
Sbjct: 203 QVKYGKEIHTHVIVRGSDASLCVVNSLINMYTECG------EMHDGVHL----------- 245
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSH 297
FE MS R++ SW LI A+SQ G EK F + + S
Sbjct: 246 -----FESMSERDVFSWTTLIDAYSQMGQEEKAVATFLKIEIFRRTSQ 288
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGFGLSSMLYATAFSARASVY 189
+F +MP RD+VSW +I+ FE L F L ++ + + + A A
Sbjct: 42 LFDQMPHRDIVSWTAIINGYVTAANSFEALNLFSALLFDPAVSPDTSVLSVALKACGQSS 101
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
++ +G LH+ VFVG+ L++MY++ G I+ +I
Sbjct: 102 NIGYGESLHAYAFKTSLLTSVFVGTNLLNMYMRTG--KIDKGCRI--------------- 144
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCS 296
F M RN ++W ++S +AG ++ +F +S G S
Sbjct: 145 -----FTEMQFRNTVTWTAIVSGMVEAGRHKEGLTYFSEMSRSKGLS 186
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 196/447 (43%), Gaps = 89/447 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLIST---------CLISSIFLQL--IDDDYRVFCDIGPRYL 49
++A G++K RK+HA + T C + ++ L D RVF ++ R+L
Sbjct: 53 LRAIGTMKLSVEGRKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFL 112
Query: 50 FTYNTMINGGVRC--------LCV------------------------GNIKMALHLHGL 77
+N M+ +RC L V G++ + +H
Sbjct: 113 VLWNMMMRCYIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSY 172
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK-----FGIIRLL--- 129
+ + S +A + +DM+ K G ++ A F +M ++ W +GI L
Sbjct: 173 MDGVFGFS-LPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKA 231
Query: 130 -IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+ F + ++DL+ W +MI+ +HG E L F ++ T + A++
Sbjct: 232 RVFFYQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANI 291
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-----GK------A 237
L+ G +H +D +G+ LI+MY KCG ++ S+QI GK A
Sbjct: 292 GALDQGEWIHQYAESRNMKIDAVLGTALIEMYSKCG--HVDKSLQIFGRMQGKDAAAWTA 349
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSH 297
++ A G KA FE M R S G+ F+ +LS C H
Sbjct: 350 IICGLATNGQASKALELFEEMQR----------SKTKPDGIT--------FIGVLSACCH 391
Query: 298 SGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMP-SKPTCVIW 352
G V +G+ YF AM + + ++ C+V+LLG +GLL EA+KLI +MP + T ++
Sbjct: 392 GGLVDEGQRYFQAMKEVYHIEPRIEHYSCLVNLLGHAGLLYEAEKLITDMPVNNDTMPLF 451
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
GALL AC ++ N +++E + + + + D
Sbjct: 452 GALLTACKANGNVEMSEWLTKRIAKED 478
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 152/336 (45%), Gaps = 60/336 (17%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G +++ H K + S+A + I M+ +CG D A F G
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIF-------------G 479
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+++ +D+V+W+ +IS + G + L + ++ G +S + S+
Sbjct: 480 MVKT---------KDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISS 530
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ LE G +HS V + D+ + + L+DMY+KCG GI +
Sbjct: 531 CANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKM------------ 578
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSL 291
F+ M R++++W V+IS + G ++ + F F+++
Sbjct: 579 ----------FDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAI 628
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
LS C H+G V KG+ FT M +++ ++ CMVDLLG SG L EA+ ++ MP +P
Sbjct: 629 LSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPD 688
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
IWG LLGAC H N ++ V + D + G
Sbjct: 689 GGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDG 724
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM +G C +G + + LHG K S+ S M+ KC + + A
Sbjct: 217 TMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDAR------ 270
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
I+F ++PE+DLVSW ++I R G + + F+ + G
Sbjct: 271 ----------------ILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
++ + + + + G H+ +V V +G+ LI MY KC I +++
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATV- 373
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
F ++ +R+ SW ++ A+ +AG+
Sbjct: 374 ---------------------FRMLHQRDTDSWSSMVVAYCKAGL 397
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 56/268 (20%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDE---SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
+G + + +H +F + + ++A S + M+ +CG+V A
Sbjct: 120 LGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDA--------------- 164
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+RL F +MPERD+V+W +IS +G E L + + + A
Sbjct: 165 ----VRL---FDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRM---------VRSAGD 208
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
AR + +E G L + V E S VG+ L +K G S + +L +M
Sbjct: 209 GGARPNSRTMESG--LEACGVLGELS----VGTCLHGFGVKAGVGHCPSVVS---SLFSM 259
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS----------- 290
Y + ST+ A + F + ++++SW LI A+ +AG EK F +
Sbjct: 260 YTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVI 319
Query: 291 --LLSGCSHSGPVTKGKHYFTAMAKFTY 316
LL+G + V GK + A+ + +
Sbjct: 320 SCLLAGLGNDAKVRGGKTFHAAIVRRNF 347
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 168/376 (44%), Gaps = 69/376 (18%)
Query: 53 NTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKC 100
N M++ G+R C + NI HG V + F S ++I + IDM++KC
Sbjct: 325 NLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKC 384
Query: 101 GAVDYAESAFLRMLNPSLFCWKFGIIRLLI----------MFQKMPERDLVSWNTMISIL 150
D A F RM N ++ W I+ I F MPE+++VSWNT+IS L
Sbjct: 385 HRQDTAFRIFDRMSNKTVVTWN-SIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISAL 443
Query: 151 TRHGFGFETLCTFIELWNHG----FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
+ E + F + + G++ M A+A ++ +W ++ +
Sbjct: 444 VQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKW---IYYYIEKNRI 500
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
LDV +G+ L+DM+ +CG ES++ I F ++ R++ +W
Sbjct: 501 QLDVRLGTTLVDMFSRCG--DPESAMSI--------------------FNSLTNRDVSAW 538
Query: 267 MVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK 313
I A + AG +E+ F F+ L+ C H G V +GK F +M K
Sbjct: 539 TAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEK 598
Query: 314 F----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
++ CMVDLLG +GLL EA +LI +MP++P VIW +LL AC N ++A
Sbjct: 599 LHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAA 658
Query: 370 LVMRNLLQLDVKVFGS 385
+ L + GS
Sbjct: 659 FAAEKIQVLAPERTGS 674
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 36/219 (16%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
+ +HGL+ K + D + S + + +CG +D A
Sbjct: 152 GIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARK---------------------- 189
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGFGLSSMLYATAFSARASVY 189
+F +M ER++VSW +MI R F + + F + + +S+ SA A +
Sbjct: 190 VFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLE 249
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALVT 240
DLE G ++ + ++ + S L+DMY+KC I S++ + A+ +
Sbjct: 250 DLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMAS 309
Query: 241 MYAEGGSTQKADLAFELMS----RRNMISWMVLISAFSQ 275
Y G T++A LM R + IS + IS+ SQ
Sbjct: 310 NYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQ 348
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 97/264 (36%), Gaps = 51/264 (19%)
Query: 79 KKFYFVSDESIAKSS------IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
K + F+ D I + +DM++KC A+D A+ +F
Sbjct: 256 KVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKR----------------------LF 293
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+ +L N M S R G E L + + G + +A S+ + + ++
Sbjct: 294 DEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNIL 353
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALVTMYA 243
WG H V+ + + LIDMY+KC ++ ++V Y
Sbjct: 354 WGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYI 413
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF--------------V 289
E G A F M +N++SW +ISA Q + E+ F + +
Sbjct: 414 ENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMM 473
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAK 313
S+ S C H G + K + + K
Sbjct: 474 SIASACGHLGALDLAKWIYYYIEK 497
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 22/145 (15%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
+N++I G E + FI + N G + S A D G +H ++
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
M+ + D+FV + L+ Y +C G A F+ MS RN
Sbjct: 161 KMDYAKDLFVQNSLVHFYAEC----------------------GELDCARKVFDEMSERN 198
Query: 263 MISWMVLISAFSQAGVLEKPRFFFF 287
++SW +I +++ + FF
Sbjct: 199 VVSWTSMICGYARREFAKDAVDLFF 223
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 157/352 (44%), Gaps = 51/352 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + LHGLV + F + + +++++ CG + + AF M + W
Sbjct: 99 CAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSW 158
Query: 122 KFGIIRLL---------IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I ++F++MP R++VSW+ MI TR E + F + G
Sbjct: 159 NVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGIS 218
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
S + A ++V + G LH C G+ +
Sbjct: 219 PSEITVLAVVPALSNVGKILIGEALHG----------------------YCEKEGLVWDV 256
Query: 233 QIGKALVTMYAEGGSTQKADLAF-ELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
++G +L+ +YA+ GS Q + F E++ RRN++SW +IS F+ G+ K F
Sbjct: 257 RVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRR 316
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLL 333
F+S+L CSH G V +G +F +M + Y +F C++D+LG +G L
Sbjct: 317 AGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMI-YEYNINPDVKHFGCIIDMLGRAGRL 375
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
EA+++I + P + +W LLG C + ++ E M+ +L L+ + G
Sbjct: 376 REAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGD 427
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 160/353 (45%), Gaps = 50/353 (14%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TMI C +G+ MA ++ ++ + D + + +D + G + AE F M
Sbjct: 655 TMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNM 714
Query: 114 -------LNPSLFCWKFG--IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
+N + + G I+ +F ++P++DL+SW++MIS ++ + L F
Sbjct: 715 KVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFR 774
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
++ +++ A+ S+ A + L+ G +H V D + + LIDMY+KCG
Sbjct: 775 QMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCG 834
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF 284
S ++A F+ M ++ +SW +I + G EK
Sbjct: 835 ----------------------SAKEALQVFKEMKEKDTLSWNSIIIGLANNG-FEKESL 871
Query: 285 FFF--------------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDL 326
F F+ +L C+++ V +G +F +M + ++ C+VDL
Sbjct: 872 NLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDL 931
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LG +G L +A + I EMP P V+W LLG+C +H + +AE+V + L +L+
Sbjct: 932 LGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELE 984
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 125/320 (39%), Gaps = 48/320 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + +H + K +SD ++ S I ++ CG + YA S
Sbjct: 562 CARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARS------------- 608
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +M +D+VSWN++I ++ + L F + N G +
Sbjct: 609 ---------VFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKV 659
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSI 232
SA + D ++ + +DV++G+ L+D + + G N +I
Sbjct: 660 VSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNI 719
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
A++ YA+G A F+ + ++++ISW +IS +SQA F
Sbjct: 720 VTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRA 779
Query: 287 -------FFVSLLSGCSHSGPVTKGK---HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEA 336
S++S C+H G + GK Y T ++D+ G EA
Sbjct: 780 KVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEA 839
Query: 337 KKLIDEMPSKPTCVIWGALL 356
++ EM K T + W +++
Sbjct: 840 LQVFKEMKEKDT-LSWNSII 858
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 39/271 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
MF++M +++L+SWN MI+I + E + F+++ G ++ A+ A +
Sbjct: 262 MFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSA 321
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G LH + ++ + + L+DMY KCGC ++
Sbjct: 322 LFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGC----------------------LEE 359
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A F+ M R+++SW ++SA+ ++G F FVS+LS CSH
Sbjct: 360 ARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSH 419
Query: 298 SGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G + +G+HYF M + +F CMVDL G +G + EA I +MP +P +WG
Sbjct: 420 TGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWG 479
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALL AC H + + L QL K G
Sbjct: 480 ALLSACRVHSKMDIGLVAADLLFQLAPKQSG 510
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 103/290 (35%), Gaps = 63/290 (21%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + E+++V +N MI + E L F + + F + A + + +
Sbjct: 93 IFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC-----------------------NG 227
L G +H +V + ++F+G+ L+ MY KCGC G
Sbjct: 153 LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAG 212
Query: 228 IESSIQIGKAL-----------------------VTMYAEGGSTQKADLAFELMSRRNMI 264
S Q AL V Y + Q FE M+++N+I
Sbjct: 213 YAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLI 272
Query: 265 SWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAM 311
SW V+I+ + + + F SLL C + G+ +
Sbjct: 273 SWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYI 332
Query: 312 AKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
K + ++D+ G L EA+ + D+M + V W +++ A
Sbjct: 333 EKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDV-VSWTSMMSA 381
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 32/156 (20%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
LH ++K + + + +DM+ KCG ++ A +F
Sbjct: 327 RLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARD----------------------VF 364
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
KM RD+VSW +M+S R G G++ + F ++ + G S+ + + SA + L+
Sbjct: 365 DKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLD 424
Query: 193 WGPH----------LHSRVVHMEPSLDVFVGSGLID 218
G H + R+ H +D+F +G ++
Sbjct: 425 QGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVE 460
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 54/333 (16%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGIIRLLI-MFQ 133
F SD + + IDM+VKCG++ A F M + W + G +R +F
Sbjct: 141 FSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFD 200
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+P +D+V+W M++ ++ + L F L + G + + SA A + ++
Sbjct: 201 GLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKY 260
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
+ D+ SG G+ ++ +G AL+ MY++ G+ ++A
Sbjct: 261 ANWIR----------DIAESSGF----------GVGDNVLVGSALIDMYSKCGNVEEAYD 300
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGP 300
F+ M RN+ S+ +I F+ G F+ FV +L+ CSH+G
Sbjct: 301 VFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGL 360
Query: 301 VTKGKHYFTAMAKFTYTCY--------FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
V +G+ F +M K CY + CM DLL +G L +A +L++ MP + +W
Sbjct: 361 VDQGQQLFASMEK----CYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVW 416
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
GALLGA H N +AE+ + L +L+ G+
Sbjct: 417 GALLGASHVHGNPDVAEIASKRLFELEPDNIGN 449
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/406 (26%), Positives = 170/406 (41%), Gaps = 82/406 (20%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVR-- 61
CGSLK+ AR + ++ ++S + +ID V + + + M++ GV+
Sbjct: 284 CGSLKT---ARLLFDGMLERNVVS--WNSMID--AYVQNENPKEAMVIFQKMLDEGVKPT 336
Query: 62 ----------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
C +G+++ +H L + + S+ S I M+ KC VD A S
Sbjct: 337 DVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAAS--- 393
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
MF K+ R +VSWN MI ++G E L F ++
Sbjct: 394 -------------------MFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTV 434
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ Y + +A A + +H V+ +VFV + L+DMY KC
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKC-------- 486
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
G+ A L F++MS R++ +W +I + G+ + F
Sbjct: 487 --------------GAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQK 532
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLL 333
F+S++S CSHSG V G F M K Y+ ++ MVDLLG +G L
Sbjct: 533 GTIRPNGVTFLSVISACSHSGLVEAGLKCFHMM-KENYSIEPSMDHYGAMVDLLGRAGRL 591
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA I +MP KP ++GA+LGAC H N AE V L +L+
Sbjct: 592 NEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELN 637
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/433 (21%), Positives = 174/433 (40%), Gaps = 99/433 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+K CG L + ++IH L+ + +F + + + +VF + R L
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDL 201
Query: 50 FTYNTMING------------GVRCLCVGN--------------------IKMALHLHGL 77
++NT++ G V +C N I++ +HG
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGY 261
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ F S +IA + +DM+ KCG++ A ++F M E
Sbjct: 262 AMRAGFDSLVNIATALVDMYAKCGSLKTAR----------------------LLFDGMLE 299
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R++VSWN+MI ++ E + F ++ + G + + A A A + DLE G +
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI 359
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-GK----------ALVTMYAEGG 246
H V +E +V V + LI MY C C ++++ + GK A++ +A+ G
Sbjct: 360 HKLSVELELDRNVSVVNSLISMY--CKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNG 417
Query: 247 STQKADLAFELMSRR----NMISWMVLISAFSQAGVLEKPRFF-------------FFFV 289
+A F M R + +++ +I+A ++ + ++ F
Sbjct: 418 RPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTT 477
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS---K 346
+L+ + G + + F M++ T + M+D G G+ A +L +EM +
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWN-AMIDGYGTHGIGKAALELFEEMQKGTIR 536
Query: 347 PTCVIWGALLGAC 359
P V + +++ AC
Sbjct: 537 PNGVTFLSVISAC 549
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 30/173 (17%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
NG+ LV+++ GS +A FE + ++ + + ++ F++ L+K F
Sbjct: 63 NGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKF 122
Query: 286 FF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGL 332
F F LL C + GK + K ++ +DL ++GL
Sbjct: 123 FVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFS------LDLFAMTGL 176
Query: 333 ---------LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376
+ EA+K+ D MP + V W ++ + ++A L M NL+
Sbjct: 177 ENMYAKCRQVHEARKVFDRMPER-DLVSWNTIVAGYSQNGMARMA-LEMVNLM 227
>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
Length = 1084
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 145/323 (44%), Gaps = 61/323 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ L +H V + D SI + ++++ +CG + A S+F
Sbjct: 456 CAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSF----------- 504
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+++ +D ++WN ++S + G E L F+ + G + + +A
Sbjct: 505 -----------EEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ +++ G +H+RV+ S + VG+ LI +Y KC
Sbjct: 554 LSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKC------------------ 595
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFFFFFVSLLSGCSHSGP 300
GS + A + F MS RN +SW +I++ SQ G LE FF
Sbjct: 596 ----GSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFF------------DQM 639
Query: 301 VTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+G YF +M+ ++ C++D+ G +G L AKK ++EMP ++W LL
Sbjct: 640 KKEGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLL 699
Query: 357 GACCSHYNTKLAELVMRNLLQLD 379
AC H N ++ EL ++LL+L+
Sbjct: 700 SACKVHKNIEVGELAAKHLLELE 722
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 153/361 (42%), Gaps = 72/361 (19%)
Query: 25 LISSIFLQLID--DDYRVFCD-----IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGL 77
LI F Q+ D + +FC I P FTY ++ C C G I + +H L
Sbjct: 315 LILVAFGQINDLAKSFELFCQMQTAGIRPNQ-FTYPCILR---TCTCTGEIDLGEQIHSL 370
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K F SD ++ IDM+ K G ++ A R+L M + E
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKAR-------------------RVLEMLK---E 408
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+D+VSW +MI+ +H + + L F E+ G ++ A+A S A + + G +
Sbjct: 409 KDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQI 468
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+RV S DV + + L+++Y +C G ++A +FE
Sbjct: 469 HARVYVSGYSGDVSIWNALVNLYARC----------------------GRIREAFSSFEE 506
Query: 258 MSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKG 304
+ ++ I+W L+S F+Q+G+ E+ + F F FVS LS ++ + +G
Sbjct: 507 IEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQG 566
Query: 305 KHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K + K + T ++ L G G +AK EM S+ V W ++ +C
Sbjct: 567 KQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM-SERNEVSWNTIITSCSQ 625
Query: 362 H 362
H
Sbjct: 626 H 626
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 61/311 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H K F S+ + + I ++++CG+ AE +F
Sbjct: 165 VHAQGYKQGFCSETFVGNALITLYLRCGSFRLAER----------------------VFY 202
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
MP RD V++NT+IS + G L F E+ + G + ++ +A AS+ DL+
Sbjct: 203 DMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQK 262
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G LHS + S D + L+D+Y+KCG +E+++ I
Sbjct: 263 GTQLHSYLFKAGMSSDYIMEGSLLDLYVKCG--DVETALVI------------------- 301
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGP 300
F L +R N++ W +++ AF Q L K F F + +L C+ +G
Sbjct: 302 -FNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGE 360
Query: 301 VTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ G+ H + F Y ++D+ G L +A++++ EM + V W +++
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIA 419
Query: 358 ACCSHYNTKLA 368
H K A
Sbjct: 420 GYVQHEYCKDA 430
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 37/243 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+++ RD VSW M+S ++G G E L + ++ G + + ++ S+
Sbjct: 99 VFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAEL 158
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H++ + FVG+ LI +YL+C GS +
Sbjct: 159 FAQGRSVHAQGYKQGFCSETFVGNALITLYLRC----------------------GSFRL 196
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A+ F M R+ +++ LIS +Q E F SLL+ C+
Sbjct: 197 AERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACAS 256
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKK--LIDEMPSKPTCVIWGAL 355
G + KG + + K + ++ LL L G+ + +I + ++ V+W +
Sbjct: 257 LGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLI 316
Query: 356 LGA 358
L A
Sbjct: 317 LVA 319
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 97/269 (36%), Gaps = 76/269 (28%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCL--------------------CV------------G 66
RVF D+ R T+NT+I+G +C CV G
Sbjct: 199 RVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLG 258
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+++ LH + K SD + S +D++VKCG V+ A
Sbjct: 259 DLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETA-------------------- 298
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
L++F ++V WN ++ + ++ F ++ G + Y
Sbjct: 299 --LVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCT 356
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+++ G +HS V D++V LIDMY K G
Sbjct: 357 CTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW--------------------- 395
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQ 275
+KA E++ ++++SW +I+ + Q
Sbjct: 396 -LEKARRVLEMLKEKDVVSWTSMIAGYVQ 423
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+++ K G+ +G L+ +Y++ G A FE +S R+ +SW+ ++S ++Q G
Sbjct: 63 EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 278 VLEKPRFF-------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFV-- 321
+ E+ + + S+LS C+ + +G+ K + + FV
Sbjct: 123 LGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGN 182
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG-ACCSH 362
++ L G A+++ +MP + T + G A C+H
Sbjct: 183 ALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAH 224
>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 153/335 (45%), Gaps = 62/335 (18%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C+ ++ L HG + K F + + ID++ KCG
Sbjct: 252 CLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGG--------------------- 290
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIELWNHGFGLSSMLYATAF 182
G+ +F+++ E DLV WNTM+S +++ F + L F ++ G+ + +
Sbjct: 291 GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVI 350
Query: 183 SARASVYDLEWGPHLHSRVVHME-PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA +++ G +HS + + PS + V + LI MY KC
Sbjct: 351 SACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKC------------------ 392
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFFFF------------F 288
G+ Q A F+ M+ N +S +I+ ++Q G+ +E F + F
Sbjct: 393 ----GNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITF 448
Query: 289 VSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMP 344
+S+LS C+H+G V +G +YF M KF ++ CM+DLLG +G L EA+ LI MP
Sbjct: 449 ISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P + W +LLGAC +H N +LA +LQL+
Sbjct: 509 FNPGSIGWASLLGACRTHGNIELAVKAANQVLQLE 543
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 118/313 (37%), Gaps = 62/313 (19%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C ++ + LH + F S S+ + + + K G +D A+ F M
Sbjct: 150 CCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGM---------G 200
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
GI RD VSWN+MI +H G + L F E+ G + A+ +
Sbjct: 201 GI------------RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A + DL G H +++ + VGSGLID+Y KC
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKC-------------------- 288
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQ---------------AGVLEKPRFFFFF 288
GG FE ++ +++ W ++S +SQ G+ +P F
Sbjct: 289 -GGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPN-DCSF 346
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV----CMVDLLGLSGLLGEAKKLIDEMP 344
V ++S CS+ ++GK + K + ++ + G L +A++L D M
Sbjct: 347 VCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA 406
Query: 345 SKPTCVIWGALLG 357
T + + G
Sbjct: 407 EHNTVSLNSMIAG 419
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 34/224 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ ++ LH L K + + I ++ KCG + +A AF + +P++F +
Sbjct: 18 CIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSF 77
Query: 122 KFGII------RLLI---MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I R LI +F ++PE DLVS+NT+IS G L F + G
Sbjct: 78 NAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLD 137
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + + A D+ LHS V +G +S +
Sbjct: 138 MDGFTLSAVIT--ACCDDVGLIGQLHSVAV----------------------SSGFDSYV 173
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSR-RNMISWMVLISAFSQ 275
+ AL+T Y + G A F M R+ +SW +I A+ Q
Sbjct: 174 SVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQ 217
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 150/329 (45%), Gaps = 63/329 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LHG K S+ ++ S I M++KCG+V+ +F
Sbjct: 178 LHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRR----------------------LFD 215
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+MP + L++WN +IS +++G ++ L + ++ + G + S+ A
Sbjct: 216 EMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCA------- 268
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
HL ++ + E VG L++ NG ++ + A ++MYA G+ KA
Sbjct: 269 --HLGAKKIGHE------VGK-LVE------SNGFVPNVFVSNASISMYARCGNLAKARA 313
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F++M ++++SW +I + G+ E F FV +LS CSHSG
Sbjct: 314 VFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGL 373
Query: 301 VTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
KG F AM K Y ++ C+VDLLG +G L EA + I+ MP +P +WGAL
Sbjct: 374 TDKGLELFRAM-KREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGAL 432
Query: 356 LGACCSHYNTKLAELVMRNLLQLDVKVFG 384
LGAC H N +AEL +++ + G
Sbjct: 433 LGACKIHKNVDMAELAFAKVIEFEPNNIG 461
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 128/350 (36%), Gaps = 101/350 (28%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP-------------SLF 119
LH V K ++ + + I M+ KCG V A F NP S +
Sbjct: 74 QLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEE--NPQSSQLSVCYNALISGY 131
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLY 178
+ MF++M E T +S+ + G LCT E LW
Sbjct: 132 TANSKVTDAAYMFRRMKE-------TGVSVDSVTMLGLVPLCTVPEYLW----------- 173
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
G LH + V +V V + I MY+KCG S++ G+ L
Sbjct: 174 --------------LGRSLHGQCVKGGLDSEVAVLNSFITMYMKCG------SVEAGRRL 213
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ----------------AGVLEKP 282
F+ M + +I+W +IS +SQ +GV P
Sbjct: 214 ----------------FDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257
Query: 283 RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV-------CMVDLLGLSGLLGE 335
F VS+LS C+H G G + K + FV + + G L +
Sbjct: 258 ---FTLVSVLSSCAHLGAKKIGHE----VGKLVESNGFVPNVFVSNASISMYARCGNLAK 310
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
A+ + D MP K + V W A++G H ++ ++ ++++ ++ G+
Sbjct: 311 ARAVFDIMPVK-SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGA 359
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 168/375 (44%), Gaps = 91/375 (24%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T+ +++ VRC + + +HG + K F D+ + + +DM+ + G V+ +++
Sbjct: 639 TFASVLPACVRCKVFSDKE---GIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKT-- 693
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS---ILTRHGFGFETL------- 160
+F +M +RD+VSWNTMI+ + R+ L
Sbjct: 694 --------------------IFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQ 733
Query: 161 -----CTFIELWNHG---FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
TF++ + G F +S+ T A++ L G +H+ V + ++DV V
Sbjct: 734 GEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAV 793
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
GS L+DMY KCGC + S + F+ M RN+I+W VLI A
Sbjct: 794 GSALVDMYAKCGCLNLASRV----------------------FDQMPIRNVITWNVLIMA 831
Query: 273 FSQAGVLEKPRFFF-------------------FFVSLLSGCSHSGPVTKGKHYFTAMAK 313
+ G E+ F ++++ + CSHSG V +G H F M K
Sbjct: 832 YGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTM-K 890
Query: 314 FTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV-IWGALLGACCSHYNTKL 367
++ ++ C+VDLLG SG + EA +LI+ MPS V W +LLGAC H + +
Sbjct: 891 ASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEF 950
Query: 368 AELVMRNLLQLDVKV 382
E+ ++L L+ V
Sbjct: 951 GEIAAKHLFVLEPNV 965
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 52/244 (21%)
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA--KSSIDMHVKCGAVDYAESAFLRMLN 115
V LC+G +H V KF S+A S ++M+ KCG + A
Sbjct: 341 AAVHDLCLGK-----QIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ------- 388
Query: 116 PSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
+F +P+RD VSWN+MI+ TLC F E W L
Sbjct: 389 ---------------VFDDIPDRDHVSWNSMIA----------TLCRF-EEWELSLHLFR 422
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
++ + + + + L H S V V +G + L+ G +
Sbjct: 423 LMLSE--NVDPTSFTLVSVAHACSHV-----RGGVRLGKQVHAYTLRNG----DLRTYTN 471
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGC 295
ALVTMYA G A F + ++++SW +IS+ SQ E+ + ++ ++ G
Sbjct: 472 NALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEA-LMYVYLMIVDGV 530
Query: 296 SHSG 299
G
Sbjct: 531 RPDG 534
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 20/275 (7%)
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
D E++F+ ++C + ++F + R + WN +++ R+ F + L F
Sbjct: 565 DLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLF 624
Query: 164 IELWNHG-FGLSSMLYATAFSA--RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
+E+ + F ++ +A+ A R V+ + G +H +V D +V + L+DMY
Sbjct: 625 VEMISESEFCPNATTFASVLPACVRCKVFSDKEG--IHGYIVKRGFGKDKYVQNALMDMY 682
Query: 221 LKCGCNGIESSI--QIGKALVTMYAE--------GGSTQKADLAFELMSRRNMISWMVLI 270
+ G I +I ++ K + + G +L E+ R+ +
Sbjct: 683 SRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFV 742
Query: 271 SAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLL 327
GV KP +++L GC+ + KGK H + K +VD+
Sbjct: 743 DYEDDGGVPFKPN-SVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMY 801
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G L A ++ D+MP + + W L+ A H
Sbjct: 802 AKCGCLNLASRVFDQMPIR-NVITWNVLIMAYGMH 835
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 84/421 (19%), Positives = 157/421 (37%), Gaps = 88/421 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLI-------STCLISSIFLQL------IDDDYRVFCDIGPR 47
+KA ++ L + ++IHA + S+ +++ + + + +VF DI R
Sbjct: 337 LKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDR 396
Query: 48 YLFTYNTMINGGVRCLC-VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
++N+MI LC +++LHL F + E++ +S + A +
Sbjct: 397 DHVSWNSMIA----TLCRFEEWELSLHL------FRLMLSENVDPTSFTLVSVAHACSHV 446
Query: 107 ESAFLRMLNPSLFCWKFGIIR------LLIMFQKMPE-------------RDLVSWNTMI 147
+ + G +R L+ M+ ++ +DLVSWNT+I
Sbjct: 447 RGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVI 506
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
S L+++ E L + G + A+ A + + L G +H +
Sbjct: 507 SSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALR---- 562
Query: 208 LDVFVGSGLIDMYLKCGCNG--IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
NG IE+S +G ALV MY +K L F+ + RR +
Sbjct: 563 ------------------NGDLIENSF-VGTALVDMYCNCKQPKKGRLVFDGVVRRTVAV 603
Query: 266 WMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGPVT--KGKHYFT 309
W L++ +++ ++ F F S+L C + +G H +
Sbjct: 604 WNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYI 663
Query: 310 AMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC--CSHYNTK 366
F Y ++D+ G + +K + M +K V W ++ C C Y+
Sbjct: 664 VKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRM-NKRDIVSWNTMITGCIVCGRYDDA 722
Query: 367 L 367
L
Sbjct: 723 L 723
>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
Length = 772
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 139/320 (43%), Gaps = 62/320 (19%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
++ +HGL K+ + + + I + KCG +D E F RM
Sbjct: 254 ELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRM--------------- 298
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
RD V+WN+MIS + + L + G L S +YAT SA ASV
Sbjct: 299 ------SERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASV 352
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
LE G +H+ V C +ES + +G ALV MY++ G
Sbjct: 353 ATLERGMEVHACSVR--------------------AC--LESDVVVGSALVDMYSKCGRL 390
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEK--------------PRFFFFFVSLLSG 294
A F M RN SW +IS +++ G E+ P FV +LS
Sbjct: 391 DYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSA 450
Query: 295 CSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CSH+G + +G +F +M+ +F CM DLLG +G L + + ID+MP KP +
Sbjct: 451 CSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVL 510
Query: 351 IWGALLGACCSHYNTKLAEL 370
IW +LGACC N + AEL
Sbjct: 511 IWRTVLGACC-RANGRKAEL 529
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 44/188 (23%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
I ++M+ KCG++ A +FC+ M E+D VSWN+MI+
Sbjct: 71 IGNGLVNMYAKCGSIADARR---------VFCF-------------MMEKDSVSWNSMIT 108
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
L ++G E + + + H S ++ S+ AS+ + G +H + +
Sbjct: 109 GLDQNGCFIEAVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKL---- 164
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
GI+ ++ + AL+T+YAE G + F M + +SW
Sbjct: 165 ------------------GIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNS 206
Query: 269 LISAFSQA 276
+I A + +
Sbjct: 207 IIGALASS 214
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
V ++ + +H + SD + + +DM+ KCG +DYA
Sbjct: 352 VATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYA------------------ 393
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
L F MP R+ SWN+MIS RHG G E L F +
Sbjct: 394 ----LRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANM 431
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 82/416 (19%), Positives = 148/416 (35%), Gaps = 109/416 (26%)
Query: 10 LPIARKIHAQLISTCLIS----------SIFLQL--IDDDYRVFCDIGPRYLFTYNTMIN 57
L R++H +I+T L+ +++ + I D RVFC + + ++N+MI
Sbjct: 49 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMIT 108
Query: 58 G---------------GVR-----------------CLCVGNIKMALHLHGLVKKFYFVS 85
G +R C + K+ +HG K
Sbjct: 109 GLDQNGCFIEAVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDL 168
Query: 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNT 145
+ S++ + + + YAE+ +L C K +F MPE D VSWN+
Sbjct: 169 NVSVSNALMTL--------YAETGYLNE------CRK--------IFSSMPEHDQVSWNS 206
Query: 146 MISILTRHGFGF-ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
+I L E + F+ G L+ + +++ SA +S+ E G +H +
Sbjct: 207 IIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKY 266
Query: 205 EPSLDVFVGSGLIDMYLKCG-CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS-RRN 262
+ + + LI Y KCG +G E F MS RR+
Sbjct: 267 NIADEATTENALIACYGKCGEMDGCEK-----------------------IFSRMSERRD 303
Query: 263 MISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLSGCSHSGPVTKGKHYFT 309
++W +IS + +L K F + ++LS + + +G
Sbjct: 304 DVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHA 363
Query: 310 AMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ V +VD+ G L A + + MP + + W +++ H
Sbjct: 364 CSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNS-YSWNSMISGYARH 418
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 144/328 (43%), Gaps = 65/328 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+HG K D S+ + I ++ KCG V+ A S +F
Sbjct: 251 IHGYGIKLGVDPDVSLTNALIALYGKCGNVETARS----------------------LFD 288
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
M ++LVSWN MI+ ++ G + F + + + SA AS+ L
Sbjct: 289 GMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNT 348
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H V G+E ++ I AL+ MYA+ G+ A
Sbjct: 349 GRWMHELVKR----------------------KGLEINVSITNALIDMYAKCGNIDLARE 386
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSG 299
FE + R+++SW +I A + G E KP F F ++ + C HSG
Sbjct: 387 VFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTF-AAVFTACRHSG 445
Query: 300 PVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
V +G+ +F +M + Y+ + CMVDLLG +G L EA + ID+MP +P +WGA
Sbjct: 446 LVEEGRKHFESMMR-DYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGA 504
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVKV 382
LLG+C H N +LAELV L LD +
Sbjct: 505 LLGSCRIHSNLELAELVAEKLFLLDPQT 532
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 22/135 (16%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F Y TM++ C +G + +H LVK+ + SI + IDM+ KCG +D A
Sbjct: 328 FDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLARE- 386
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F+++P R +VSW +MI HG G + L F + +
Sbjct: 387 ---------------------VFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDE 425
Query: 170 GFGLSSMLYATAFSA 184
G +S +A F+A
Sbjct: 426 GVKPNSFTFAAVFTA 440
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR--ASV 188
MF +MP+RD+ WNT+I G E L + + HG GL Y F R A +
Sbjct: 84 MFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNM--HGAGLFPDNYTFPFVVRSCAVL 141
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L G +H +V DVFV S +LV MY++ G T
Sbjct: 142 SALREGKEVHCNIVKHGFDSDVFVQS----------------------SLVAMYSQSGET 179
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQ 275
+L F M RN++SW +I+ + Q
Sbjct: 180 LGMELVFGEMVVRNIVSWTAVIAGYVQ 206
>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 790
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 160/359 (44%), Gaps = 60/359 (16%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLV---KKFYFVSDESIAKSSIDMHVKCGAVDYA 106
FTY ++I C +++ +H V + F F D S+ + ++ KCG + A
Sbjct: 287 FTYPSVIRA---CANARLLQLGKQVHAYVLRREDFSFHFDNSL----VTLYYKCGKFNEA 339
Query: 107 ESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
+ F +M L W I ++F++M E++++SW MIS L +GFG
Sbjct: 340 RAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGE 399
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E L F + GF ++ A + A + G H+++V +
Sbjct: 400 EGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKI------------- 446
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
G +SS+ G AL+TMYA+ G ++A F M + +SW LI+A Q G
Sbjct: 447 ---------GFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHG 497
Query: 278 -------VLE-------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCY 319
V E +P F +++L+ CSH+G V +G+ YF +M +
Sbjct: 498 HGVEAVDVYEEMLKKGIRPDRITF-LTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADH 556
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ ++DLL SG EA+ +I+ +P KPT IW ALL C H N +L + L L
Sbjct: 557 YARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGL 615
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/359 (21%), Positives = 145/359 (40%), Gaps = 50/359 (13%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP---------S 117
++++A +HG + F F I ID++ K +DYA F + P S
Sbjct: 29 SLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVS 88
Query: 118 LFCWKFGIIRLLIMFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
+C I +F++ P RD V +N MI+ + + G+ + F ++ + GF
Sbjct: 89 GYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDD 148
Query: 176 MLYATAFSARASVYDLEWG-PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------- 227
YA+ + A V D E H+ + V + L+ +Y +C +
Sbjct: 149 FTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSAR 208
Query: 228 ------IESSIQIGKALVTMYAEGGSTQKADLAFELM----SRRNMISWMVLISAFSQAG 277
E + ++T Y + G DL EL+ ++++ +IS + G
Sbjct: 209 KVFDDIPEKDERSWTTMMTGYVKNGCF---DLGKELLKGMDENMKLVAYNAMISGYVNCG 265
Query: 278 V----LEKPRFF---------FFFVSLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFV 321
+ LE R F + S++ C+++ + GK Y F++ +
Sbjct: 266 LYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFH-FDN 324
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
+V L G EA+ + ++MP+K V W ALL S + A+L+ + + + ++
Sbjct: 325 SLVTLYYKCGKFNEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 39/271 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
MF++M +++L+SWN MI+I + E + F+++ G ++ A+ A +
Sbjct: 262 MFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSA 321
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G LH + ++ + + L+DMY KCGC ++
Sbjct: 322 LFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGC----------------------LEE 359
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A F+ M R+++SW ++SA+ ++G F FVS+LS CSH
Sbjct: 360 ARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSH 419
Query: 298 SGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+G + +G+HYF M + +F CMVDL G +G + EA I +MP +P +WG
Sbjct: 420 TGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWG 479
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
ALL AC H + + L QL K G
Sbjct: 480 ALLSACRVHSKMDIGLVAADLLFQLAPKQSG 510
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 103/290 (35%), Gaps = 63/290 (21%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + E+++V +N MI + E L F + + F + A + + +
Sbjct: 93 IFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC-----------------------NG 227
L G +H +V + ++F+G+ L+ MY KCGC G
Sbjct: 153 LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAG 212
Query: 228 IESSIQIGKAL-----------------------VTMYAEGGSTQKADLAFELMSRRNMI 264
S Q AL V Y + Q FE M+++N+I
Sbjct: 213 YAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLI 272
Query: 265 SWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAM 311
SW V+I+ + + + F SLL C + G+ +
Sbjct: 273 SWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYI 332
Query: 312 AKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
K + ++D+ G L EA+ + D+M + V W +++ A
Sbjct: 333 EKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDV-VSWTSMMSA 381
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 32/156 (20%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
LH ++K + + + +DM+ KCG ++ A +F
Sbjct: 327 RLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARD----------------------VF 364
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
KM RD+VSW +M+S R G G++ + F ++ + G S+ + + SA + L+
Sbjct: 365 DKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLD 424
Query: 193 WGPH----------LHSRVVHMEPSLDVFVGSGLID 218
G H + R+ H +D+F +G ++
Sbjct: 425 QGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVE 460
>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 853
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 146/330 (44%), Gaps = 62/330 (18%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+K+ LHG + K F + +I + IDM+ KCG ++ A
Sbjct: 453 LKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYE------------------- 493
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F ++ +RD+VSWN+MI+ + + F ++ G + + A SA A+
Sbjct: 494 ---IFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACAN 550
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ +G +H ++ +LDV+ S LIDMY KCG +
Sbjct: 551 LPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCG----------------------N 588
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLS 293
+ A F+ M +N++SW +I+A+ G L+ F F+ ++S
Sbjct: 589 LKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIIS 648
Query: 294 GCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
C H G V +G +F +M + ++ C+VDL G +G L EA + + MP P
Sbjct: 649 LCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDA 708
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WG LLGA H N +LA++ L+ LD
Sbjct: 709 GVWGTLLGASRLHKNVELAKVASSRLMDLD 738
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 125/322 (38%), Gaps = 57/322 (17%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
I + + LHGLV + SI S + M+ KCG D A
Sbjct: 251 IDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDA--------------------- 289
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+ +F+ M D V+WN MIS + G E+L F E+ + G ++ +++ + +
Sbjct: 290 -IKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSK 348
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----------GCNGIESSIQIGK 236
+LE+ +H ++ SLD+F+ S LID Y KC CN ++ + +
Sbjct: 349 FENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVD--VVVFT 406
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCS 296
A+++ Y G A M W+V + L VS+L
Sbjct: 407 AMISGYLHNGLNIDA---------LEMFRWLVKVKISPNEITL---------VSILPVIG 448
Query: 297 HSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ G+ H F F C C ++D+ G + A ++ + SK V W
Sbjct: 449 GLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRL-SKRDIVSWN 507
Query: 354 ALLGACCSHYNTKLAELVMRNL 375
+++ C N A + R +
Sbjct: 508 SMITRCAQSDNPSAAIDIFRQM 529
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 44/226 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ + N K L V +E +A S I +++ G +D A F R+L
Sbjct: 144 CVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVL------- 196
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++D V WN M++ + G + F + +++ +
Sbjct: 197 ---------------QKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCV 241
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
S AS ++ G LH VV + + + L+ MY KCG + +I++
Sbjct: 242 LSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCG--RFDDAIKL------- 292
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
F +MSR + ++W +IS + Q+G++E+ FF+
Sbjct: 293 -------------FRMMSRADTVTWNCMISGYVQSGLMEESLIFFY 325
>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Brachypodium distachyon]
Length = 515
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 129/267 (48%), Gaps = 41/267 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP RD+V+W ++++ L R G L + ++ G + A A S+ A
Sbjct: 99 LFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTT 158
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H+ V + G+E + +G +LV+MYA+ GS ++
Sbjct: 159 LELGQSVHATAVRL----------------------GLEPFLSVGNSLVSMYAKTGSLRE 196
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSLLSGCS 296
A F+ R ++W LI ++Q G E +P + F + LL CS
Sbjct: 197 ARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTF-IGLLFACS 255
Query: 297 HSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H+G V G+ +F +M A T ++ CMVD+LG +G L EA +L+D+ K +W
Sbjct: 256 HAGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVW 315
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
ALLGAC +H N +LAE + +LD
Sbjct: 316 KALLGACRTHRNAELAERAAEMVWRLD 342
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 167/395 (42%), Gaps = 94/395 (23%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMI-----NGGVR--------------------------- 61
+D+ RVF +G R L + TMI NG R
Sbjct: 156 MDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQA 215
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ KM L +HG + + + D + S +DM+ K G ++ A F RML
Sbjct: 216 CTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLY------ 269
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++++SW+ +IS ++GF L +++ + G+ S+ +
Sbjct: 270 ----------------KNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSV 313
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + V L+ G +H +V D + +IDMY KCG
Sbjct: 314 LLACSQVGFLKLGKSVHGYIVR-RLHFDCVSSTAVIDMYSKCG----------------- 355
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
S A F+ +S R+ ISW +I+++ G E+ F F
Sbjct: 356 -----SLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATF 410
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
SLLS SHSG V KG+++F+ M ++ CMVDLL +G + EA++LI+ M
Sbjct: 411 ASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMI 470
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++P IW ALL C +H + E+ + +L+L+
Sbjct: 471 TEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELN 505
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 129/314 (41%), Gaps = 60/314 (19%)
Query: 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
+ D + + ++++ KCG +D A + +F KM RDLV
Sbjct: 136 YGDDVFVGAAVLNLYAKCGKMDEA----------------------MRVFDKMGRRDLVC 173
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W TMI+ L ++G E + + ++ ++ A ++ + G +H ++
Sbjct: 174 WTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMI 233
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+ +DV V + L+D MYA+ G + A F M +N
Sbjct: 234 RKDIIMDVIVQTSLVD----------------------MYAKNGHLELASCVFRRMLYKN 271
Query: 263 MISWMVLISAFSQAG--------VLEKPRFFF-----FFVSLLSGCSHSGPVTKGKH-YF 308
+ISW LIS F+Q G V++ F + VS+L CS G + GK +
Sbjct: 272 VISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHG 331
Query: 309 TAMAKFTYTCY-FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
+ + + C ++D+ G L A+ + D++ + + + W A++ + H + +
Sbjct: 332 YIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDS-ISWNAIIASYGIHGSGEE 390
Query: 368 AELVMRNLLQLDVK 381
A + + + +VK
Sbjct: 391 ALSLFLQMRETNVK 404
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 22/147 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F K P+ + +WN MI +R G FE L + + + G S Y A D
Sbjct: 61 VFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLD 120
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G + V DVFVG+ ++++Y KC G +
Sbjct: 121 LRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKC----------------------GKMDE 158
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG 277
A F+ M RR+++ W +I+ +Q G
Sbjct: 159 AMRVFDKMGRRDLVCWTTMITGLAQNG 185
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 157/349 (44%), Gaps = 59/349 (16%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM+ C ++++ +H + F S+ I + ID++ KCG V+ A
Sbjct: 200 TMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETA------- 252
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
C +F+ + +D+VSWNT+I T E L F E+ G
Sbjct: 253 ------CG---------LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 297
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ + + A A + ++ G +H V++ L D + ++
Sbjct: 298 NDVTIVSILPACAHLGAIDIGRWIH-----------VYIDKKLKD---------VTNAPS 337
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
+ +L+ MYA+ G + A F M +++ SW +I F+ G F
Sbjct: 338 LRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNG 397
Query: 287 ------FFVSLLSGCSHSGPVTKGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEA 336
FV LLS CSHSG + G+H F +M + + T ++ CM+DLLG SGL EA
Sbjct: 398 IEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEA 457
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
K++I MP +P VIW +LL AC H N +LAE RNL++++ + GS
Sbjct: 458 KEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGS 506
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 44/255 (17%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG 124
+HG V K + D + S I M+ + G ++ A F R + + + G
Sbjct: 87 QIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSG 146
Query: 125 IIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
IR MF ++P +D+VSWN MIS G E L F E+ T S
Sbjct: 147 NIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLS 206
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A +E G +HS ID + G S+++I AL+ +Y+
Sbjct: 207 ACAQSRSVELGRQVHS----------------WIDDH------GFGSNLKIVNALIDLYS 244
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
+ G + A FE +S ++++SW LI ++ + ++ F VS
Sbjct: 245 KCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVS 304
Query: 291 LLSGCSHSGPVTKGK 305
+L C+H G + G+
Sbjct: 305 ILPACAHLGAIDIGR 319
>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 153/335 (45%), Gaps = 62/335 (18%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C+ ++ L HG + K F + + ID++ KCG
Sbjct: 252 CLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGG--------------------- 290
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIELWNHGFGLSSMLYATAF 182
G+ +F+++ E DLV WNTM+S +++ F + L F ++ G+ + +
Sbjct: 291 GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVI 350
Query: 183 SARASVYDLEWGPHLHSRVVHME-PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA +++ G +HS + + PS + V + LI MY KC
Sbjct: 351 SACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKC------------------ 392
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFFFF------------F 288
G+ Q A F+ M+ N +S +I+ ++Q G+ +E F + F
Sbjct: 393 ----GNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITF 448
Query: 289 VSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMP 344
+S+LS C+H+G V +G +YF M KF ++ CM+DLLG +G L EA+ LI MP
Sbjct: 449 ISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P + W +LLGAC +H N +LA +LQL+
Sbjct: 509 FNPGSIGWASLLGACRTHGNIELAVKAANQVLQLE 543
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 41/239 (17%)
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD VSWN+MI +H G + L F E+ G + A+ +A + DL G
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF 262
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H +++ + VGSGLID+Y KC GG FE
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKC---------------------GGGMSDCRKVFEE 301
Query: 258 MSRRNMISWMVLISAFSQ---------------AGVLEKPRFFFFFVSLLSGCSHSGPVT 302
++ +++ W ++S +SQ G+ +P FV ++S CS+ +
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPN-DCSFVCVISACSNLSSPS 360
Query: 303 KGKHYFTAMAKFTYTCYFV----CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+GK + K + ++ + G L +A++L D M T + + G
Sbjct: 361 QGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAG 419
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 34/224 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ ++ LH L K + + I ++ KCG + +A AF + +P++F +
Sbjct: 18 CIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSF 77
Query: 122 KFGII------RLLI---MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I R LI +F ++PE DLVS+NT+IS G L F + G
Sbjct: 78 NAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLD 137
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + + A D+ LHS V +G +S +
Sbjct: 138 MDXFTLSAVIT--ACCDDVGLIGQLHSVAV----------------------SSGFDSYV 173
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSR-RNMISWMVLISAFSQ 275
+ AL+T Y + G A F M R+ +SW +I A+ Q
Sbjct: 174 SVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQ 217
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/407 (27%), Positives = 184/407 (45%), Gaps = 80/407 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LID---------DDYRVFCDIGPRYL 49
+ +CGSL ++ R++HA +I L S +++ LID + VF +
Sbjct: 346 LNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDA 405
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKK-------FYFVSDESIAKSSIDMH----- 97
+YN MI G R +G++ A+ + G ++ FVS ++ S D+
Sbjct: 406 ISYNAMIEGYAR---LGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQI 462
Query: 98 ----VKCG-AVD-YAESAFLRMLNPSLFCWKFGIIR-LLIMFQKMPERDLVSWNTMISIL 150
VK G ++D YA SA + + + KF ++ ++F M RD+V WN MI L
Sbjct: 463 HGLIVKSGTSLDLYAGSALIDVYS------KFSLVDDAKLVFSLMQNRDMVIWNAMIFGL 516
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
++ G E + F L G + + + +++ + G H++++ D
Sbjct: 517 AQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDP 576
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
+ + LIDMY KCG I+ G+ L FE +++I W +I
Sbjct: 577 HISNALIDMYAKCGF------IEEGR----------------LLFESTLGKDVICWNSMI 614
Query: 271 SAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY- 316
S ++Q G E+ F FVS+LS C+H+G V +G H+F +M K Y
Sbjct: 615 STYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHFNSM-KTKYA 673
Query: 317 ----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
T ++ +V+L G SG L AK+ I+ MP +P IW +LL AC
Sbjct: 674 VEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSAC 720
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 47/249 (18%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG------LSSMLYATAFSA 184
+F MP R+LVSW + IS+ +HG + L F + G + L A+A A
Sbjct: 87 LFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRA 146
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A +G +H + G+++++ +G ALV +YA+
Sbjct: 147 CAQSRAARFGEQVHGVAAKL----------------------GLDANVFVGTALVNLYAK 184
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVS 290
G A F+ + RN ++W +I+ +SQAG LE +P F S
Sbjct: 185 AGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPD-RFVLAS 243
Query: 291 LLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
S CS G V G+ Y A + ++DL L A++L D M ++
Sbjct: 244 AASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENR- 302
Query: 348 TCVIWGALL 356
V W ++
Sbjct: 303 NLVSWTTMI 311
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 124/315 (39%), Gaps = 69/315 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G ++ +HG + SD S+ + ID++ KC
Sbjct: 248 CSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCS-------------------- 287
Query: 122 KFGIIRLLI---MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
RLL+ +F M R+LVSW TMI+ ++ E + F +L G+
Sbjct: 288 -----RLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFAC 342
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
+ ++ S+ + G +H+ V+ + D +V + LIDMY KC
Sbjct: 343 TSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKC--------------- 387
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRF------F 285
+A FE ++ + IS+ +I +++ G + K R+
Sbjct: 388 -------EHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSL 440
Query: 286 FFFVSLLSGCSHSG---PVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLID 341
FVSLL G S S ++K H + + Y ++D+ L+ +AK +
Sbjct: 441 LTFVSLL-GVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFS 499
Query: 342 EMPSKPTCVIWGALL 356
M ++ VIW A++
Sbjct: 500 LMQNR-DMVIWNAMI 513
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 44/203 (21%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+HG+ K ++ + + ++++ K G +D A S +F
Sbjct: 158 QVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMS----------------------VF 195
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+P R+ V+W +I+ ++ G L F + G + A+A SA + + +E
Sbjct: 196 DALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVE 255
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H D V + LID+Y KC S + + + L
Sbjct: 256 GGRQIHGYAYRTAAESDASVVNALIDLYCKC------SRLLLARRL-------------- 295
Query: 253 LAFELMSRRNMISWMVLISAFSQ 275
F+ M RN++SW +I+ + Q
Sbjct: 296 --FDSMENRNLVSWTTMIAGYMQ 316
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 161/346 (46%), Gaps = 62/346 (17%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY T+++ C G+I++ +H V F S+ I + ID++ KCG V+ A
Sbjct: 198 TYVTVLSA---CAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETA---- 250
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
C +FQ + +D++SWNT+I T E L F E+ G
Sbjct: 251 ---------CG---------LFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 292
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ + + A A + ++ G R +H+ ID LK G+ +
Sbjct: 293 ETPNDVTMLSVLPACAHLGAIDIG-----RWIHV-----------YIDKRLK----GVTN 332
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---- 286
+ + +L+ MYA+ G + A F M +++ SW +I F+ G + F
Sbjct: 333 ASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMR 392
Query: 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMAK-FTYTC---YFVCMVDLLGLSGLL 333
FV LLS CSHSG + G+H F +M + + T ++ CM+DLLG SGL
Sbjct: 393 KIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLF 452
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA+++I+ M +P VIW +LL AC H N +LAE +NL++++
Sbjct: 453 KEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIE 498
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 105/255 (41%), Gaps = 44/255 (17%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG 124
+HG V K F D + S I M+V+ ++ A F R + + + G
Sbjct: 85 QIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRG 144
Query: 125 IIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
IR +F ++P +D+VSWN MIS G E L F E+ Y T S
Sbjct: 145 DIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLS 204
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A +E G +HS V +G +S+++I AL+ +Y+
Sbjct: 205 ACAHSGSIELGRQVHSWV----------------------DDHGFDSNLKIVNALIDLYS 242
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
+ G + A F+ +S +++ISW LI ++ + ++ F +S
Sbjct: 243 KCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLS 302
Query: 291 LLSGCSHSGPVTKGK 305
+L C+H G + G+
Sbjct: 303 VLPACAHLGAIDIGR 317
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 26/272 (9%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ + E + + WNTMI +L ++ + + G +S + + A
Sbjct: 20 VFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKT 79
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL---------KCGCNGIESSIQIGKALVTM 241
G +H +V+ + LD++V + LI MY+ K + AL+T
Sbjct: 80 FTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITG 139
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
YA G + A F+ + ++++SW +IS +++ G ++ F +
Sbjct: 140 YASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTY 199
Query: 289 VSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPS 345
V++LS C+HSG + G+ H + F V ++DL G + A L +
Sbjct: 200 VTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSY 259
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
K + W L+G K A L+ + +L+
Sbjct: 260 KDV-ISWNTLIGGYTHMNLYKEALLLFQEMLR 290
>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/452 (23%), Positives = 181/452 (40%), Gaps = 112/452 (24%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYLF 50
KACG + +H + T L++S+F+ L+D + RVF ++ R +
Sbjct: 131 KACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVV 190
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
++ +I G VR C G + +H
Sbjct: 191 SWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQA 250
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
K F +A + M+ KCG ++Y L +F+KM R
Sbjct: 251 MKKGFDVSSFVANTLATMYNKCGKLEYG----------------------LTLFEKMSMR 288
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
D+VSW T+I+ L + G + FI + + +A S A++ +EWG LH
Sbjct: 289 DVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLH 348
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ ++H+ G+ +S+ + +++TMYA+ G + + F M
Sbjct: 349 ALILHL----------------------GLAASLSVENSIMTMYAKCGQLTSSSVIFHEM 386
Query: 259 SRRNMISWMVLISAFSQAG------------VLEKPR-FFFFFVSLLSGCSHSGPVTKGK 305
+RR+++SW +I+ +SQ G +E P+ F S+LS C + + GK
Sbjct: 387 TRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGK 446
Query: 306 --HYFTAMAKFTYTC----------YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
H + +T ++ CM+DLL +G L +A+ +I+ MP V+W
Sbjct: 447 QLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWS 506
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
LL AC H + + +LQL+ G+
Sbjct: 507 TLLRACRVHGDVERGRRTAERILQLEPNCAGT 538
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 75/198 (37%), Gaps = 37/198 (18%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAFSARASVY 189
MF KM ++D +SW T+IS E L F + G + + + A A
Sbjct: 78 MFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNS 137
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D+ +G LH V VFVGS L+DM Y + G
Sbjct: 138 DVNYGELLHGYAVKTGLVNSVFVGSALLDM----------------------YTKNGKIF 175
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
+ F M RN++SW +I+ +AG ++ +F F L C+
Sbjct: 176 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 235
Query: 297 HSGPVTKGKH-YFTAMAK 313
SG + G+ + AM K
Sbjct: 236 DSGALNYGREIHAQAMKK 253
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/404 (24%), Positives = 164/404 (40%), Gaps = 96/404 (23%)
Query: 49 LFTYNTMINGGV------------RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
L + TM N G C GN+ + L +HG V K + I + M
Sbjct: 122 LLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSM 181
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKF--------------------------------- 123
+ KC +D A M + W
Sbjct: 182 YGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTM 241
Query: 124 -------------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
++ + MF K+ E+ L+SWN MI++ + E + ++++ HG
Sbjct: 242 GSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHG 301
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
++ ++ A + G +H V + ++ + + LIDMY KCGC
Sbjct: 302 VEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGC----- 356
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPR 283
++A F+ M R+++SW +ISA+ +G + +K R
Sbjct: 357 -----------------LKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMR 399
Query: 284 FFFF------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLG 334
F FVS+L+ CSH+G V +G++ F MA++ T ++ CMVDLLG +G +
Sbjct: 400 DSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKID 459
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
EA L +MP +P +WG+LL AC + + +A L +L QL
Sbjct: 460 EAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQL 503
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++ ++++V +N MI +G + L F + N GF + Y A + +
Sbjct: 93 IFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGN 152
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H VV + +++++G+GL+ MY KC
Sbjct: 153 LWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKW----------------------LDA 190
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG 277
A + M R+M+SW +++ ++Q G
Sbjct: 191 ARRVLDEMPGRDMVSWNSMVAGYAQNG 217
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 170/397 (42%), Gaps = 74/397 (18%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHL-------------HGLVKK 80
IDD Y++F ++ + ++ MING VR + + L+L +G ++
Sbjct: 280 IDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQS 339
Query: 81 FYF-----------VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII--- 126
V D S I + CG D A F M+ + W I
Sbjct: 340 GRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYA 399
Query: 127 ------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ L MF +M ER++VSWN++I+ ++G FE L FI + G
Sbjct: 400 QAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVC 459
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A A++ L G LH + D+FV + A++T
Sbjct: 460 CLRASANLAALNVGVQLHHLTIKTGFGNDLFVKN----------------------AILT 497
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
MYA+ G +A+ F + ++++SW LI+ ++ G ++ F
Sbjct: 498 MYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVT 557
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDE 342
F LLS C+H G V +G + F +M + TY+ ++ C+++LLG G L EA +++
Sbjct: 558 FTGLLSACNHGGFVDQGLNLFKSMTE-TYSIKPQSEHYACVINLLGRVGRLEEAVEIVQG 616
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
M + + IWGALL AC H+N +LA+ LL L+
Sbjct: 617 MKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALE 653
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 140/298 (46%), Gaps = 48/298 (16%)
Query: 32 QLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAK 91
+L + ++F ++ + + ++N++++G + N KM L L F + + ++
Sbjct: 154 RLFREAKKLFDEMLVKNVVSWNSILSGYTK-----NGKMQLGLQF----FEAMGERNVVS 204
Query: 92 SS--IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRLLIMFQKMPERDL 140
+ +D +V G +D A F ++ P++ W +G + +F +MP ++L
Sbjct: 205 WNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNL 264
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSWN MI R + F+E+ + +++A + Y + G L +R
Sbjct: 265 VSWNAMIGAYVRENQIDDAYKLFMEMPEKD--------SVSWTAMINGY-VRVGKLLQAR 315
Query: 201 -VVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIG-----KALVTMYAEGGSTQK 250
++++ P ++ + +I+ YL+ G N I S I + +++T YA G T +
Sbjct: 316 EILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDE 375
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEK---------PRFFFFFVSLLSGCSHSG 299
A F+ M ++M+SW +I+A++QAG ++K R + SL++G +G
Sbjct: 376 ALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNG 433
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 119/286 (41%), Gaps = 36/286 (12%)
Query: 99 KCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRLLIMFQKMPERDLVSWNTMISI 149
+ G ++ A + FL+M ++ + K G I +F MP+R+LVSWN+MI+
Sbjct: 27 RSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAG 86
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ E + L++ F + + + +LE L + + + D
Sbjct: 87 YLHN----ELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQ---D 139
Query: 210 VFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
+ LI Y K + ++ ++++ Y + G Q FE M
Sbjct: 140 TVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGE 199
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAM 311
RN++SW +++ + G L+ FF +V++LSG +H G +T+ ++ F M
Sbjct: 200 RNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEM 259
Query: 312 AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ M+ + +A KL EMP K + V W A++
Sbjct: 260 PTKNLVSWN-AMIGAYVRENQIDDAYKLFMEMPEKDS-VSWTAMIN 303
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV--------- 289
++ G ++A F M+ RN++++ +ISA+++ G + R F +
Sbjct: 22 ISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWN 81
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
S+++G H+ V F M K +++T C + G L +A++L + +P K
Sbjct: 82 SMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRI----GELEKARELFNLLPDK 137
Query: 347 PTCVIWGALLG 357
V AL+
Sbjct: 138 QDTVCRNALIA 148
>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
Length = 762
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 148/335 (44%), Gaps = 61/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + M +H + K S+ S+ +D +VKCG ++ A +F R+ P
Sbjct: 299 CCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEP----- 353
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ VSW+ +IS ++ G + + F L + G L+S +Y +
Sbjct: 354 -----------------NDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSV 396
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
F A A+ +L G H + G+ S + A+VTM
Sbjct: 397 FQACAAQANLNMGSQAHGDAIK----------------------RGLVSYLYGESAMVTM 434
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
Y++ G A AFE + + ++W +IS ++ G + FF F
Sbjct: 435 YSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTF 494
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+++L+ CSHSG V + K Y +M++ ++ CM+D +GLL EA +LI+ MP
Sbjct: 495 IAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMP 554
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+P + W +LLG C +H + KL ++ NL +LD
Sbjct: 555 FEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLD 589
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/439 (20%), Positives = 162/439 (36%), Gaps = 104/439 (23%)
Query: 2 KACGSLKSLPIARKIHAQL----------ISTCLI-------SSIFLQLIDDDY------ 38
+ACG L+SL R IH +L I CL+ S I +Q + D+
Sbjct: 95 EACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLV 154
Query: 39 ------RVFCDIGP--RYLFTYNTMINGGVR------------CLCVGNIKMALHLHGLV 78
+ G + + ++ M G+R CL +++ +H V
Sbjct: 155 SWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHV 214
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ ++ ++ + +M+V+CG ++ A+ ++F M +
Sbjct: 215 IRAQLNANITVETAICNMYVRCGWLEGAK----------------------LVFDGMDAQ 252
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+ V+W ++ T+ L F + G L +++ + D + G +H
Sbjct: 253 NAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIH 312
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
S +V + +V VG+ L+D Y+KCG IES+ + +F +
Sbjct: 313 SHIVKLGAESEVSVGTPLVDFYVKCG--DIESAYR--------------------SFGRI 350
Query: 259 SRRNMISWMVLISAFSQAGVLEK-PRFF------------FFFVSLLSGCSHSGPVTKGK 305
S N +SW LIS FSQ+G LE + F F + S+ C+ + G
Sbjct: 351 SEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGS 410
Query: 306 HYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
K Y MV + G L A++ + + +P V W A++ H
Sbjct: 411 QAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESI-DEPDAVAWTAIISGYAYH 469
Query: 363 YNTKLAELVMRNLLQLDVK 381
N A R + V+
Sbjct: 470 GNAAEALGFFRRMQSYGVR 488
>gi|242057853|ref|XP_002458072.1| hypothetical protein SORBIDRAFT_03g026480 [Sorghum bicolor]
gi|241930047|gb|EES03192.1| hypothetical protein SORBIDRAFT_03g026480 [Sorghum bicolor]
Length = 579
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 162/354 (45%), Gaps = 59/354 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDES----IAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
C+ V ++ M L LHGL+ F V + S + + +D H K GA+ AE F M +
Sbjct: 208 CVGVQSLAMLLQLHGLI--FKLVDEGSGHCFVWNALVDAHAKLGAMSDAEKVFDEMRHRD 265
Query: 118 LFCWKFG---------IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+ W I R L +F+ M ++D +WN +IS L + G + L FI+L
Sbjct: 266 ICSWNIMMDGYSRHKLIDRALDLFRSMRKKDASTWNIIISCLGENSLGEDALRLFIDLVR 325
Query: 169 ---HGFG----LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
H G L+ +Y T + + L +G +H+R + D F
Sbjct: 326 SECHSGGNAKVLNPSIYTTVLHTCSVLALLAFGRQVHARTIK-----DGFG--------- 371
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
S+ + +L++MY+ G+T + FE M+ R+++SW +I Q G+ +
Sbjct: 372 -------RSNTFVSNSLISMYSSCGATLDLEQVFEEMTVRDVVSWNSVIQGLGQNGLGRQ 424
Query: 282 -----PRFFFF-------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVD 325
R F+++L+ CSHSG V +G YF AMAK +++ ++D
Sbjct: 425 ALAAGERALELGMYNGNTFIAILTSCSHSGLVVEGLGYFDAMAKKHGVEPTLGHYISVID 484
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LLG +G L EA L+ +MP + W LL +C +H N+ + L ++ L L
Sbjct: 485 LLGRAGRLEEAYDLLRKMPFASNALAWRTLLHSCLAHKNSAMGTLAVQELRALQ 538
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 120/461 (26%), Positives = 187/461 (40%), Gaps = 113/461 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-------LQLIDDD-------------YRV 40
+++C S L I IH L+ T LIS +F L L DD Y +
Sbjct: 19 LQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGI 75
Query: 41 FCDIGPRYLFTYNTMINGGVRCLCVG---------------------NIKMAL------- 72
F I LF +N +I RC G NI
Sbjct: 76 FSQIQNPNLFVFNVLI----RCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTE 131
Query: 73 --------HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--- 121
H + +F F +D + S + M+ CG + A F +M + W
Sbjct: 132 MECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSM 191
Query: 122 -----KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN-HGFGLS 174
K G++ MF +MP R+L +W+ MI+ ++ FE EL G +
Sbjct: 192 VAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNC-FEKAIDLFELMKREGVVAN 250
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234
+ + S+ A + LE+G H VV ++++ +G+ L+DMY +CG IE +I++
Sbjct: 251 ETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCG--EIEKAIRV 308
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------- 286
FE + ++ +SW +I + G K +F
Sbjct: 309 --------------------FEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGF 348
Query: 287 -----FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAK 337
++LS CSH G V KG + M + ++ C+VD+LG +G L EA+
Sbjct: 349 SPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAE 408
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
I +MP KP I GALLGAC + NT++AE V L+++
Sbjct: 409 NFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEV 449
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 164/377 (43%), Gaps = 73/377 (19%)
Query: 28 SIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE 87
++F +++ D G FT+ T++ +R +G + +HGL+ K+ + S
Sbjct: 139 TVFAEMMRSD-------GKPNEFTFATVLTSCIRASGLG---LGKQIHGLIVKWNYDSHI 188
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+ S +DM+ K G + A +F+ +PERD+VS +I
Sbjct: 189 FVGSSLLDMYAKAGQIKEARE----------------------IFECLPERDVVSCTAII 226
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ + G E L F L + G + + YA+ +A + + L+ G H V+ E
Sbjct: 227 AGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELP 286
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
+ + LIDMY KCG + A F+ M R ISW
Sbjct: 287 FYAVLQNSLIDMYSKCG----------------------NLSYARRLFDNMPERTAISWN 324
Query: 268 VLISAFSQAG----VLEKPRFF----------FFFVSLLSGCSHSGPVTKGKHYFTAMAK 313
++ +S+ G VLE R +++LSGCSH G + F M
Sbjct: 325 AMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVA 384
Query: 314 FTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
Y T ++ C+VD+LG +G + EA + I MPSKPT + G+LLGAC H + +
Sbjct: 385 GEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIG 444
Query: 369 ELVMRNLLQLDVKVFGS 385
E V R L++++ + G+
Sbjct: 445 ESVGRRLIEIEPENAGN 461
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 39/248 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+ +MPE+++VSW MIS ++ G E L F E+ + +AT ++
Sbjct: 109 VLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASG 168
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H +V +FVGS L+D MYA+ G ++
Sbjct: 169 LGLGKQIHGLIVKWNYDSHIFVGSSLLD----------------------MYAKAGQIKE 206
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A FE + R+++S +I+ ++Q G+ E+ F + SLL+ S
Sbjct: 207 AREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSG 266
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ GK + + Y V ++D+ G L A++L D MP + T + W A
Sbjct: 267 LALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER-TAISWNA 325
Query: 355 LLGACCSH 362
+L H
Sbjct: 326 MLVGYSKH 333
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 23/142 (16%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPR 283
L+ Y + + A + M +N++SW +IS +SQ G KP
Sbjct: 93 LLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPN 152
Query: 284 FFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY-FV--CMVDLLGLSGLLGEAKKLI 340
F F ++L+ C + + GK + K+ Y + FV ++D+ +G + EA+++
Sbjct: 153 -EFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIF 211
Query: 341 DEMPSKP----TCVIWG-ALLG 357
+ +P + T +I G A LG
Sbjct: 212 ECLPERDVVSCTAIIAGYAQLG 233
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 122/269 (45%), Gaps = 40/269 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ RD++SWN+MI+ +HG F E+ N ++ +A+ S +
Sbjct: 488 VFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEA 547
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H R+ LDV +G+ LI+MY++C GS Q
Sbjct: 548 LELGKQIHGRITESGLQLDVNLGNALINMYIRC----------------------GSLQD 585
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCS 296
A F + R+++SW +I + G K F+ F S+LS C+
Sbjct: 586 ARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACN 645
Query: 297 HSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H+G V +G F++M ++ C+V LLG + EA+ LI++MP P +W
Sbjct: 646 HAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVW 705
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDVK 381
LLGAC H N LAE N L+L+ +
Sbjct: 706 ETLLGACRIHGNIALAEHAANNALKLNAR 734
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 97/448 (21%), Positives = 168/448 (37%), Gaps = 108/448 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+ AC S L +KIH+Q+I +Q + +VF I PR +
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDV 194
Query: 50 FTYNTMI--------------------NGGVRCLCVGNIKM------------ALHLHGL 77
+YNTM+ + G+ V I + +H L
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ SD + + + M V+CG VD A+ AF + + +
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF----------------------KGIAD 292
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+V +N +I+ L +HG E + + + G L+ Y + +A ++ LE G +
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
HS + S DV +G+ LI MY +C G KA F
Sbjct: 353 HSHISEDGHSSDVQIGNALISMYARC----------------------GDLPKARELFYT 390
Query: 258 MSRRNMISWMVLISAFS-QAGVLEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
M +R++ISW +I+ ++ + E R + F+ LLS C++S G
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG 450
Query: 305 K--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
K H + + ++++ G L EA+ + + ++ + W +++
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQ 509
Query: 362 H--YNT--KLAELVMRNLLQLDVKVFGS 385
H Y T KL + + L+ D F S
Sbjct: 510 HGSYETAYKLFQEMQNEELEPDNITFAS 537
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 26/222 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++MP RD++SWN++IS + GF + F E+ N GF + + Y + +A S +
Sbjct: 84 VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG---------KALVTM 241
LE G +HS+++ D V + L+ MY KCG + G ++ +
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203
Query: 242 YAEGGSTQKADLAFELMSRR----NMISWMVLISAFSQAGVLEKPRFFFFF--------- 288
YA+ ++ F MS + ++++ L+ AF+ +L++ +
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263
Query: 289 ----VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDL 326
+L++ C G V K F +A Y + L
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAAL 305
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/341 (20%), Positives = 127/341 (37%), Gaps = 64/341 (18%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
YR+ D TY +++N C ++ +H + + SD I + I M+
Sbjct: 319 YRMRSDGVALNRTTYLSILNA---CSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY 375
Query: 98 VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
+CG + A +F MP+RDL+SWN +I+ R
Sbjct: 376 ARCGDLPKARE----------------------LFYTMPKRDLISWNAIIAGYARREDRG 413
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E + + ++ + G + + SA A+ G +H ++
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR-------------- 459
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+GI+S+ + AL+ MY GS +A FE R++ISW +I+ +Q G
Sbjct: 460 --------SGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHG 511
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF---V 321
E F F S+LSGC + + GK + +
Sbjct: 512 SYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGN 571
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
++++ G L +A+ + + + + W A++G C
Sbjct: 572 ALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQ 611
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 37/159 (23%)
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +H+++V D+F+ + LI+MY+KC S
Sbjct: 43 LPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCR----------------------SVLD 80
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCS 296
A F+ M RR++ISW LIS ++Q G +K F F ++S+L+ C
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQG-FKKKAFQLFEEMQNAGFIPNKITYISILTACY 139
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE 335
+ GK + + K Y LL + G G+
Sbjct: 140 SPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD 178
>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
Length = 657
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/435 (24%), Positives = 178/435 (40%), Gaps = 104/435 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+ AC LKS+ +K+ +I++ L +L+ ++ D R+F ++ + +
Sbjct: 138 VSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNI 197
Query: 50 FTYNTMING------------------------GVRCLC--------VGNIKMALHLHGL 77
++NT+I G G R +G I LH
Sbjct: 198 LSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSC 257
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K D +A + IDM+ KCG+++ A+ +F +MPE
Sbjct: 258 SLKTGVGGDVFVACALIDMYSKCGSIEDAQ----------------------CVFDQMPE 295
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+ V WN++I+ HG+ E L + E+ + G + + ++ A + LE
Sbjct: 296 KTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQA 355
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ +V LD+ + L+D+Y K G + A F++
Sbjct: 356 HAGLVRHGFGLDIVANTALVDLYSKWG----------------------RIEDAKHVFDM 393
Query: 258 MSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
M +N+ISW LI+ + G +E F F+++LS CS+SG +G
Sbjct: 394 MPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRG 453
Query: 305 KHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
F +M++ ++ CM++LLG GLL EA LI + P KPT +W ALL AC
Sbjct: 454 WEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACR 513
Query: 361 SHYNTKLAELVMRNL 375
H N +L + L
Sbjct: 514 VHKNFELGKFAAEKL 528
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/328 (22%), Positives = 126/328 (38%), Gaps = 64/328 (19%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY+ +++ C+ + +I+ + + DE + + MHVKCG
Sbjct: 133 TYDALVSA---CIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGM-------- 181
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+I +F +MPE++++SWNT+I L G FE F+ +W
Sbjct: 182 --------------MIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDF 227
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
S ++ T A A + + G LHS + DVFV LIDMY KC
Sbjct: 228 SDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKC------- 280
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--- 287
GS + A F+ M + + W +I+ ++ G E+ ++
Sbjct: 281 ---------------GSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMR 325
Query: 288 ----------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLG 334
F ++ C+ + K + + + V +VDL G +
Sbjct: 326 DSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIE 385
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSH 362
+AK + D MP K + W AL+ +H
Sbjct: 386 DAKHVFDMMPHK-NVISWNALIAGYGNH 412
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 153/350 (43%), Gaps = 63/350 (18%)
Query: 54 TMINGGVRCLCVGNIKMALHLHG-LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
TM+ V C+ N+K+ +HG ++K + + I+++VKCG +D A
Sbjct: 209 TMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARK---- 264
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+F ++PE++ V WN++I + G E + E+
Sbjct: 265 ------------------LFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLK 306
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ SA A + G +H R + DVF+G+ LIDMY
Sbjct: 307 PDRFTVSGVLSACAQMGAFNLGNWVH-RFAEKKGIWDVFIGTALIDMY------------ 353
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
A+ G A F+ M+ RN+ +W ++S ++ G E F
Sbjct: 354 ----------AKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRES 403
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGE 335
F+++L C+HSG V GK YF M ++ ++ CMVDLLG +GLL E
Sbjct: 404 GARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQE 463
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
A++LI M +P V+WGALL AC H N ++ E ++++L+ GS
Sbjct: 464 ARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGS 513
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/415 (21%), Positives = 161/415 (38%), Gaps = 81/415 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLIDD-------DY--RVFCDIGPRYL 49
++ C +++ L ++IHA+ I + L + F+ ++I+ DY +VF
Sbjct: 13 IETCTNIQQL---KQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDG 69
Query: 50 FTYNTMING--GVRCLCVG-----NIKMALHLHGLVKKFYFV----SDESIAKSSIDMHV 98
F YN MI + CV ++ ++ G + FV + + + ++H
Sbjct: 70 FIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHG 129
Query: 99 KCGAVDYAESAFLR--MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ Y FL+ +LN + C + G + + F + +D+V WN +I+ R G
Sbjct: 130 VIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQV--FDEFDAKDVVFWNALITGYARQGMV 187
Query: 157 FETLCTFIELW-------NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
++ F E+ N G + ++ A S +L+ G +H
Sbjct: 188 LDSFGVFKEMVEVKEVRPNEG-TMMGLIVACIESK-----NLKLGRAIH----------- 230
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
G + DM L+ G +++ AL+ +Y + G A F+ + +N + W L
Sbjct: 231 ---GYMMKDMVLREG-------VKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSL 280
Query: 270 ISAFSQAGVLE--------------KPRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAK 313
I + Q G L KP F +LS C+ G G H F
Sbjct: 281 ICGYCQIGSLNEVIELLREMHLSNLKPD-RFTVSGVLSACAQMGAFNLGNWVHRFAEKKG 339
Query: 314 FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
++D+ G +G A+K+ D+M + W A+L SH + A
Sbjct: 340 IWDVFIGTALIDMYAKCGFIGAARKVFDQMNER-NVATWNAILSGYASHGQAESA 393
>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 156/353 (44%), Gaps = 54/353 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA------ESAFLRMLN 115
C +G I + +H V K F +D I + +DM+ KC D A A+ +L
Sbjct: 315 CSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILL 374
Query: 116 PSLF-----CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
S+ C + R + F MP + L+SWN+MI +++ E L F E+ G
Sbjct: 375 NSMITVYSNCGRIDDARQI--FDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLG 432
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ A SA AS+ LE G + +R + D + + L+D Y KCG
Sbjct: 433 LRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGL----- 487
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPR 283
++ G+ L F+ M + + + W ++ ++ G V ++ R
Sbjct: 488 -VEHGRKL----------------FDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMR 530
Query: 284 FF------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGL 332
FV +LS C H G V +G+ +F AM K Y ++ CMVDL +GL
Sbjct: 531 SVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAM-KLDYHINPGIEHYSCMVDLYARAGL 589
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
L +A LI++MP K +W ++L C +H N L + V + ++ LD + G+
Sbjct: 590 LEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGA 642
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 147/347 (42%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT +T+I C + +++ + L + F+S+ ++ +SID+ KC ++ +
Sbjct: 942 FTVSTVI---TVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDS--- 995
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ +F+++ + D V N MIS HGFG L F+
Sbjct: 996 -------------------VRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRE 1036
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + SA + + ++ G +HS VV +G+E
Sbjct: 1037 NLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVK----------------------SGLE 1074
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK-------- 281
S + + +LV MYA+ G A F + R++ISW +I + G + K
Sbjct: 1075 SDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKEL 1134
Query: 282 -----PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
P +L C+ G V +G F++M K ++ C+VD++ G
Sbjct: 1135 LIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGK 1194
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EA +++ MP +P+ +IWG+LL AC + + + E V +++L+
Sbjct: 1195 LKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELE 1241
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 132/332 (39%), Gaps = 41/332 (12%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF-- 119
C +G + +H + D + S ++++ KCG +D A M P F
Sbjct: 183 CTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSL 242
Query: 120 ---------CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
C + R + + +V WN+MIS + E L F + G
Sbjct: 243 SALISGYASCGRMNDARRIFCLKS--NXCVVLWNSMISGYVANNEALEALELFNNMRRKG 300
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----GC 225
+A+ SA +++ ++ G +H+ V + + D+ + S L+DMY KC C
Sbjct: 301 VQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDAC 360
Query: 226 NGIESSIQ-----IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ-AGVL 279
+ S +Q + +++T+Y+ G A F+ M +++ISW +I FSQ A +
Sbjct: 361 K-LFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPI 419
Query: 280 EKPRFF------------FFFVSLLSGCSHSGPVTKGKHYF---TAMAKFTYTCYFVCMV 324
E F F ++S C+ + G+ F T + +V
Sbjct: 420 EALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLV 479
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
D GL+ +KL D M K V W ++L
Sbjct: 480 DFYCKCGLVEHGRKLFDRM-MKSDEVPWNSML 510
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 147/400 (36%), Gaps = 111/400 (27%)
Query: 62 CLCVGNIKMALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C G+I LH L +K S SI + M+ +C ++ A+ F M + F
Sbjct: 16 CNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFS 75
Query: 121 WKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHG 170
W I + L +F MP +D SWN +IS + G F E+ W +G
Sbjct: 76 WNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNG 135
Query: 171 FGLSSMLY---------------------------------ATAFSARASVYDLEWGPHL 197
+SM++ AT A ++ L+ G +
Sbjct: 136 IAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQI 195
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK-----------ALVTMYAEGG 246
H+R+V E D +GS L+++Y KCG I+S+ + AL++ YA G
Sbjct: 196 HARIVVDEVEFDSVLGSSLVNLYGKCG--DIDSANHVLNLMKEPDAFSLSALISGYASCG 253
Query: 247 STQKADLAFELMSRRNMISWMVLISAF----------------SQAGVLEKPRFFFFFVS 290
A F L S ++ W +IS + + GV E + F S
Sbjct: 254 RMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQED---YSTFAS 310
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYT-----------CYFVC----------------- 322
+LS CS G + +G + K +T Y C
Sbjct: 311 VLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYD 370
Query: 323 ------MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
M+ + G + +A+++ D MPSK + + W +++
Sbjct: 371 TILLNSMITVYSNCGRIDDARQIFDTMPSK-SLISWNSMI 409
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 35/194 (18%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII-RLLIMFQKMPERDLVSWN 144
+D++ + G + + F +++ +L W +FG + R +F +MP+RD+VSWN
Sbjct: 752 LDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWN 811
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
TMIS G + F E+ G S Y+T S +S G +H+ ++
Sbjct: 812 TMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACR---GKQIHASMIR- 867
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIE-SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
NG++ S++ +G +L+ MY + G A F M ++
Sbjct: 868 ---------------------NGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDI 906
Query: 264 ISWMVLISAFSQAG 277
ISW LI + ++G
Sbjct: 907 ISWNSLIWSCGKSG 920
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 46/247 (18%)
Query: 33 LIDDDYRVFCDIGPRYL----FTYNTMINGGVRCLCVGNIKMALHLHG-LVKKFYFVSDE 87
L DD +R F ++ + FTY+T+++ V C G +H +++ +S+
Sbjct: 822 LFDDAFRFFSEMQKAGIRPSGFTYSTLLSF-VSSACRGK-----QIHASMIRNGVDLSNV 875
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+ S I M+ K G VDYA FG+ F M E D++SWN++I
Sbjct: 876 VVGNSLIGMYGKFGVVDYA----------------FGV------FITMEELDIISWNSLI 913
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ G+ L F+ + + G+ +T + +++ DLE G + + + +
Sbjct: 914 WSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFL 973
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGK-----------ALVTMYAEGGSTQKADLAFE 256
+ V S ID++ K CN +E S+++ + A+++ YA G + A F
Sbjct: 974 SNSIVSSASIDLFSK--CNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFV 1031
Query: 257 LMSRRNM 263
L R N+
Sbjct: 1032 LTLRENL 1038
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 64/227 (28%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMING--------------------GVR------------ 61
IDD ++F + + L ++N+MI G G+R
Sbjct: 387 IDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISA 446
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++++ + D+ I+ S +D + KCG V++ F RM+
Sbjct: 447 CASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMM------- 499
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ D V WN+M+ +G G E L F ++ + G + + +
Sbjct: 500 ---------------KSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGV 544
Query: 182 FSA----------RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
SA R Y ++ H++ + H +D++ +GL++
Sbjct: 545 LSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLE 591
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 152/333 (45%), Gaps = 52/333 (15%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR-----------MLNPSLFCWK 122
+HGLV K + ++ + I M+ C V A+ F M++ + C +
Sbjct: 311 VHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGE 370
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
R L F MP++D VSW+ MIS + ETL F E+ G + +
Sbjct: 371 IEKARAL--FDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVI 428
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA + L+ G +H+ + +++ +G+ LI+MY+K GC +E ++++ K L
Sbjct: 429 SACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGC--VEDALEVFKGL---- 482
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
+ + +W LI + G+++K F FV
Sbjct: 483 ----------------EEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFV 526
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
++L C H G V +G +F +M + ++ CMVDLLG +G+L EA++LI+ MP
Sbjct: 527 AVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPM 586
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P WGALLGAC + + + E + R L++L
Sbjct: 587 APDVSTWGALLGACKKYGDNETGERIGRKLVEL 619
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 31/240 (12%)
Query: 97 HVKCGAVDYAESAFLRMLNPS---------LFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+V G V+ A+ + RM + LF K + +F +M ++DLVSW+ +I
Sbjct: 202 YVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALI 261
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
S ++ E L F E+ +G + ++ + SA + + + G +H VV +
Sbjct: 262 SCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIE 321
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSI--------QIG-KALVTMYAEGGSTQKADLAFELM 258
V + + LI MY C + QI ++++ Y + G +KA F+ M
Sbjct: 322 TYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSM 381
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK 305
++ +SW +IS ++Q + F VS++S C+H + +GK
Sbjct: 382 PDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGK 441
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 158/359 (44%), Gaps = 58/359 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFC 120
C + + +HG + K F +D AK++ I ++ K G V AE F M +L
Sbjct: 285 CADLATLNSGQMIHGYMVKGGF-NDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVS 343
Query: 121 WKFGI------------IRLLIMFQKM---PE--RDLVSWNTMISILTRHGFGFETLCTF 163
W I + LL +KM PE ++++W+ +I G G E+L F
Sbjct: 344 WNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVF 403
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
++ +S+ A+ S A + L G +H V+ +V VG+GLI+MY KC
Sbjct: 404 RKMQLANVKANSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKC 463
Query: 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
GS + + FE + R+ ISW +I+ + G+ +
Sbjct: 464 ----------------------GSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDAL 501
Query: 284 FFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDL 326
F F++ LS CSH+G V +G F+ M + ++ CMVDL
Sbjct: 502 ATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACMVDL 561
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
LG +GL+ EA +I MP +P IW +LL +C H +T LAE + L+ K+ GS
Sbjct: 562 LGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAKISNLNSKITGS 620
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 35/230 (15%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK-- 122
+G M +LH V +F F + + I M+ K +D A F +M S+ W
Sbjct: 152 LGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTM 211
Query: 123 -------FGIIRLLIMFQKMP----ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+ + MF +M E + V+W +++S R G ET+ F ++ G
Sbjct: 212 VSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGV 271
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
G ++ + A S A + L G +H +V G
Sbjct: 272 GPTAEMLAVVLSVCADLATLNSGQMIHGYMVK----------------------GGFNDY 309
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
+ AL+T+Y +GG A+ F M +N++SW LIS+F+++GV +K
Sbjct: 310 LFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDK 359
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 74/267 (27%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN++I HG+ E L + ++ N+G + A +++ +LH VV
Sbjct: 107 WNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVV 166
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
G ++ + +G L+ MYA+ A F+ M ++
Sbjct: 167 QF----------------------GFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKS 204
Query: 263 MISWMVLISAF-----------------------------------SQAGVLEKPRFFF- 286
++SW ++S + ++ G LE+ F
Sbjct: 205 VVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFC 264
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSG 331
+LS C+ + G+ M K + Y ++ L G G
Sbjct: 265 KMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGG 324
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGA 358
+G+A+KL EM K V W AL+ +
Sbjct: 325 GVGDAEKLFHEMKVK-NLVSWNALISS 350
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 157/334 (47%), Gaps = 62/334 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++ + LH L K +S +A + I+M+ KC +D A
Sbjct: 408 CATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKA--------------- 452
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F +P ++++SW ++I+ L + FE L F ++ +++ A
Sbjct: 453 -------LDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQM-KMTLQPNAITLTAA 504
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A A + L G +H+ V+ LD F+ + L+DMY++CG + +
Sbjct: 505 LAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCG-------------RMNI 551
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE------KPRFF---FFF 288
++QK D++ SW +L++ +S+ G V+E K R F
Sbjct: 552 AWNQFNSQKKDVS----------SWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITF 601
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+SLL GC S V +G YF+ M ++ T ++ C+VDLLG +G L EA K I +MP
Sbjct: 602 ISLLCGCGKSQMVRQGLMYFSKMEEYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPV 661
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P +WGALL AC H+N L EL + + +LD
Sbjct: 662 TPDPAVWGALLNACRIHHNIDLGELSAQRIFELD 695
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 43/254 (16%)
Query: 122 KFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLYA 179
+FG ++ +F KM ER+L SWN ++ + G+ E +C + LW G +
Sbjct: 141 RFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFP 200
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ DL G +H VV G E I + AL+
Sbjct: 201 CVLRTCGGIPDLARGREVHVHVVRY----------------------GYELDIDVVNALI 238
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
TMY + G + A L F+ M RR++ISW +IS + + G+ + FF
Sbjct: 239 TMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLM 298
Query: 288 -FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC--MVDLLGLSGLLGEAKKLIDE 342
S++S C G G+ H + F VC + + +G EA+KL
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAYVITTGFAVDIS-VCNSLTQMYLYAGSWREAEKLFSR 357
Query: 343 MPSKPTCVIWGALL 356
M K V W ++
Sbjct: 358 MDCKDI-VSWTTMI 370
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 108/279 (38%), Gaps = 77/279 (27%)
Query: 36 DDYRVFCDIGPRYLFTYNTMINGGV-------------RCLCVGNIKMALH--------- 73
D + VF + R LF++N ++ G R L VG +K ++
Sbjct: 147 DAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTC 206
Query: 74 -----------LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
+H V ++ + D + + I M+VKCG V A
Sbjct: 207 GGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR--------------- 251
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
++F +MP RD++SWN MIS +G G E L F + M +
Sbjct: 252 -------LLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVI 304
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA + D G +H+ V+ ++D+ V + L MYL Y
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYL--------------------Y 344
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
A GS ++A+ F M ++++SW +IS + + EK
Sbjct: 345 A--GSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEK 381
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 44/212 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ ++ +H V F D S+ S M++ G+ AE
Sbjct: 307 CELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEK------------- 353
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +M +D+VSW TMIS + + + T+ + + A
Sbjct: 354 ---------LFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAV 404
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ DL+ G LH + V V + LI+MY KC C I KAL
Sbjct: 405 LSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKC--------IDKAL--- 453
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
D+ F + R+N+ISW +I+
Sbjct: 454 ----------DI-FHNIPRKNVISWTSIIAGL 474
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE---------- 280
S+++G A + M+ G+ A F MS RN+ SW VL+ +++ G +
Sbjct: 128 SVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRML 187
Query: 281 -----KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGL 332
KP + F +L C + +G+ + ++ Y + L+ + G
Sbjct: 188 WVGGVKPD-VYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGD 246
Query: 333 LGEAKKLIDEMPSKPTCVIWGALL 356
+ A+ L D MP + + W A++
Sbjct: 247 VKSARLLFDRMPRRDI-ISWNAMI 269
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 143/332 (43%), Gaps = 61/332 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+ ++ + +HG + + D + + DM+ KCG++ A
Sbjct: 235 IQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARH---------------- 278
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F K +RD+VSW MI + G E F +L G + ++ +A
Sbjct: 279 ------IFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNA 332
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A E G +H + + F S L+ MY KCG
Sbjct: 333 CADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCG-------------------- 372
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
+ + A F M R +++SW LIS ++Q G ++ FF FV +
Sbjct: 373 --NIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGV 430
Query: 292 LSGCSHSGPVTKGKHYFTAMAK---FTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LS C+H+G V KG YF ++ + T+T ++ C++DLL SG L EA+ +ID+MP +P
Sbjct: 431 LSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEP 490
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+W +LLG C H N KLA+ L +++
Sbjct: 491 DKFLWASLLGGCRIHGNLKLAKRAAEALFEIE 522
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 142/364 (39%), Gaps = 58/364 (15%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY+T++ CL + + + +H K FV I+ +DM++KC ++ A+ F
Sbjct: 91 TYSTLLQ---LCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLF 147
Query: 111 LRMLNPSLFCWKFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
M L W I +F +M ERD SW M S RH E L
Sbjct: 148 DEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALE 207
Query: 162 TFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F + H F + ++A +A A++ L G +H ++ + LD V S L DMY
Sbjct: 208 LFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMY 267
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
KCG G +A F+ R+++SW +I + + G E
Sbjct: 268 GKCGSIG----------------------EARHIFDKTVDRDVVSWTAMIDRYFKEGRRE 305
Query: 281 K--------------PRFFFFFVSLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCM 323
+ P F F +L+ C+ GK Y T + + +
Sbjct: 306 EGFALFSDLLKSGIWPN-EFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTL 364
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA----ELVMRNLLQLD 379
V + G + A+++ + MP +P V W +L+ + A EL++++ Q D
Sbjct: 365 VHMYTKCGNIKNARRVFNGMP-RPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPD 423
Query: 380 VKVF 383
F
Sbjct: 424 HITF 427
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 157/335 (46%), Gaps = 53/335 (15%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGI 125
+H V + F S+ ++++++ C + A F M +P + W K G
Sbjct: 128 VHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGD 187
Query: 126 IRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF--GLSSMLYATAF 182
+ + +F +M ER +VSWN M+S L ++ + L F E+ GF +S++
Sbjct: 188 LETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPV 247
Query: 183 SARASVYDL-EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
AR D+ EW +H + F ++ +I +G +LV
Sbjct: 248 CARLGAVDIGEW--------IHSYANSKGF----------------LQDTINVGNSLVDF 283
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
Y + G+ Q A F M+ +N++SW +IS + G E F F
Sbjct: 284 YCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGFEPNDSTF 343
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMP 344
V +L+ C+H G V +G+ F +M+ KF + ++ C+VDLLG G + EA+ LI MP
Sbjct: 344 VGVLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVDLLGRCGHVREARDLITSMP 403
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
KPT +WGALL AC ++ + ++AE + L++L+
Sbjct: 404 LKPTAALWGALLSACRTYGDREIAENAAKELVRLE 438
>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15130
gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 110/445 (24%), Positives = 182/445 (40%), Gaps = 108/445 (24%)
Query: 1 MKACGSLKSLPIARKIHA--QLISTCLISSIFLQLID---------DDYRVFCDIGPRYL 49
+KACG L +L +IH I ++ + L+D + +VF I R L
Sbjct: 114 LKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSL 173
Query: 50 FTYNTMINGGVR----------------------------------CLCVGNIKMALHLH 75
++N MI G V C G I +H
Sbjct: 174 ISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIH 233
Query: 76 GLVKK--FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
G + + F+ S +I S +D++VKCG + A AF
Sbjct: 234 GFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAF----------------------D 271
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
++ E+ ++SW+++I + G E + F L + S ++ A L
Sbjct: 272 QIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQ 331
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G + + V + L+ V + ++DMYLKCG +A+
Sbjct: 332 GKQMQALAVKLPSGLETSVLNSVVDMYLKCGL----------------------VDEAEK 369
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGP 300
F M +++ISW V+I+ + + G+ +K F+ ++++LS CSHSG
Sbjct: 370 CFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGM 429
Query: 301 VTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ +G+ F+ + + ++ C+VDLLG +G L EAK LID MP KP IW LL
Sbjct: 430 IKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLL 489
Query: 357 GACCSHYNTKLAELVMRNLLQLDVK 381
C H + +L + V + LL++D K
Sbjct: 490 SLCRVHGDIELGKEVGKILLRIDAK 514
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 45/247 (18%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MPER++VSW+ ++S +G +L F E+ G + ++T A +
Sbjct: 63 VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H + + + V VG+ L+DMY KC G +
Sbjct: 123 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC----------------------GRINE 160
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG----------------VLEKPRFFFFFVSLLSG 294
A+ F + R++ISW +I+ F AG + E+P F SLL
Sbjct: 161 AEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPD-EFTLTSLLKA 219
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCYFVC-----MVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CS +G + GK + + + C +VDL G L A+K D++ K T
Sbjct: 220 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEK-TM 278
Query: 350 VIWGALL 356
+ W +L+
Sbjct: 279 ISWSSLI 285
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 100/238 (42%), Gaps = 63/238 (26%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT++T + C + ++ L +HG K F + S +DM+ KCG ++ AE
Sbjct: 108 FTFSTNLKA---CGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKV 164
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF------ 163
F R+++ R L+SWN MI+ G+G + L TF
Sbjct: 165 FRRIVD----------------------RSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 202
Query: 164 -IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME---PSLDVFVGSGLIDM 219
I+ F L+S+L A S+ +Y G +H +V PS GS L+D+
Sbjct: 203 NIKERPDEFTLTSLLKAC--SSTGMIYA---GKQIHGFLVRSGFHCPSSATITGS-LVDL 256
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
Y+KCG +++ A AF+ + + MISW LI ++Q G
Sbjct: 257 YVKCG---------------YLFS-------ARKAFDQIKEKTMISWSSLILGYAQEG 292
>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
Length = 704
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/433 (24%), Positives = 177/433 (40%), Gaps = 104/433 (24%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFT 51
AC LKS+ +K+ +I++ L +L+ ++ D R+F ++ + + +
Sbjct: 140 ACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILS 199
Query: 52 YNTMING------------------------GVRCLC--------VGNIKMALHLHGLVK 79
+NT+I G G R +G I LH
Sbjct: 200 WNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSL 259
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
K D +A + IDM+ KCG+++ A+ +F +MPE+
Sbjct: 260 KTGVGGDVFVACALIDMYSKCGSIEDAQC----------------------VFDQMPEKT 297
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
V WN++I+ HG+ E L + E+ + G + + ++ A + LE H+
Sbjct: 298 TVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHA 357
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+V LD+ + L+D+Y K G + A F++M
Sbjct: 358 GLVRHGFGLDIVANTALVDLYSKWG----------------------RIEDAKHVFDMMP 395
Query: 260 RRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKH 306
+N+ISW LI+ + G +E F F+++LS CS+SG +G
Sbjct: 396 HKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWE 455
Query: 307 YFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
F +M++ ++ CM++LLG GLL EA LI + P KPT +W ALL AC H
Sbjct: 456 IFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVH 515
Query: 363 YNTKLAELVMRNL 375
N +L + L
Sbjct: 516 KNFELGKFAAEKL 528
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/328 (22%), Positives = 126/328 (38%), Gaps = 64/328 (19%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY+ +++ C+ + +I+ + + DE + + MHVKCG
Sbjct: 133 TYDALVSA---CIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGM-------- 181
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+I +F +MPE++++SWNT+I L G FE F+ +W
Sbjct: 182 --------------MIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXF 227
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
S ++ T A A + + G LHS + DVFV LIDMY KC
Sbjct: 228 SDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKC------- 280
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--- 287
GS + A F+ M + + W +I+ ++ G E+ ++
Sbjct: 281 ---------------GSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMR 325
Query: 288 ----------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLG 334
F ++ C+ + K + + + V +VDL G +
Sbjct: 326 DSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIE 385
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSH 362
+AK + D MP K + W AL+ +H
Sbjct: 386 DAKHVFDMMPHK-NVISWNALIAGYGNH 412
>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
Length = 608
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 146/344 (42%), Gaps = 53/344 (15%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
++++ LH + +D + S IDM+ KCG A F + + W I
Sbjct: 118 SLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALIS 177
Query: 127 ---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSM 176
L +FQ MP L +W +IS + G + F+E+ + +
Sbjct: 178 GYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAF 237
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ AT A + L G LH V+ + G SS+ +G
Sbjct: 238 VLATVIGGAADLAALVLGRQLHGFVMRL----------------------GFLSSMIVGN 275
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KP 282
ALV MY++ A FE ++ R++ISW ++ +Q G E KP
Sbjct: 276 ALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKP 335
Query: 283 RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAK 337
F V L+ CSH+G V KG+ F +M K Y ++ C +DLL SG L EA+
Sbjct: 336 NEVTF-VGLIYACSHAGLVQKGRQLFDSM-KREYGMKPGVQHYTCYLDLLSRSGYLSEAE 393
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
KLI MP +P WGALL AC H +T++ V NLL+L K
Sbjct: 394 KLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPK 437
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIE--LWNHGFGLSSMLYATAFSARASVY 189
F P RDL ++ +++ ++ H E + + L + + A+ SA +
Sbjct: 59 FDDAPRRDLHLYSALLAAVS-HSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLR 117
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN----------GIESSIQIGKALV 239
L G LH+ S D V S LIDMY KCG G+++S+ + AL+
Sbjct: 118 SLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSV-VWTALI 176
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
+ YA G T +A F+ M + +W LIS F +AG
Sbjct: 177 SGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAG 214
>gi|334185681|ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g28640
gi|9294278|dbj|BAB02180.1| unnamed protein product [Arabidopsis thaliana]
gi|332643948|gb|AEE77469.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 166/370 (44%), Gaps = 71/370 (19%)
Query: 30 FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLH-GLVKKFYFVSDES 88
FL ++ ++ DI P YL T++ +I V CL + +H +VK F+SD
Sbjct: 101 FLLMVKEEEE---DIAPSYL-TFHFLI---VACLKACFFSVGKQIHCWVVKNGVFLSDS- 152
Query: 89 IAKSSIDMHVKCGAVD-YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
HV+ G + Y E L + +F ++P+ D+V W+ ++
Sbjct: 153 --------HVQTGVLRIYVEDKLL--------------LDARKVFDEIPQPDVVKWDVLM 190
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ R G G E L F E+ G TA +A A V L G +H
Sbjct: 191 NGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHE-------- 242
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
FV + IES + +G ALV MYA+ G + A F+ ++RRN+ SW
Sbjct: 243 ---FVKKK----------SWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWA 289
Query: 268 VLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFTAM-A 312
LI ++ G +K + +L+ C+H G + +G+ M A
Sbjct: 290 ALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEA 349
Query: 313 KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
++ T ++ C+VDL+ +G L +A LI++MP KP +WGALL C +H N +L E
Sbjct: 350 RYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGE 409
Query: 370 LVMRNLLQLD 379
L ++NLL L+
Sbjct: 410 LAVKNLLDLE 419
>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
[Vitis vinifera]
gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 148/332 (44%), Gaps = 61/332 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G+ M + +HG + K + I S +DM++KCG+++ AF
Sbjct: 262 LGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAF-------------- 307
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
++M ERD+ +WN M + G L E+ G ++ ATA +A
Sbjct: 308 --------EEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNKFTLATALTA 359
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ LE G H + + +DV V + L+DMY KCG +G AL
Sbjct: 360 CANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCG--------SMGDALKV---- 407
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRF------FFFFVSL 291
F + R+++SW +I F+Q G + E+ R + F+ +
Sbjct: 408 ----------FGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICV 457
Query: 292 LSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
L CS G + +G YF +M + ++ CMVD+LG +G + EA++LI MP +
Sbjct: 458 LYACSQGGLINEGWEYFLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMPFQA 517
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ ++W LLGAC H + + L + L LD
Sbjct: 518 SVLVWQTLLGACRVHGDVETGLLAAKQALSLD 549
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 176/402 (43%), Gaps = 96/402 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LIDDDYRVFCDIGPRYLFTYNTMING 58
+KAC + K+LP +++H Q+I + + + LI +++T + I
Sbjct: 94 LKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLI-------------HMYTSSGSI-- 138
Query: 59 GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPS 117
V CV F + ++AK+S I ++ G VD A +
Sbjct: 139 -VEAECVLR--------------EFSEENTLAKNSMISGYLSKGHVDKARA--------- 174
Query: 118 LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSM 176
MF +M +D+ SW+ +I+ T++G E L F ++ +H S
Sbjct: 175 -------------MFDQMKAKDVASWSAIITGCTKNGMHTEALALFEDMMVSHTLPNESA 221
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
L + SA A + L G +H+ + + G + SI++
Sbjct: 222 L-VSLLSACAHLGALHQGRWIHAYIDRI----------------------GADMSIRLST 258
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------- 286
AL+ MYA+ G Q F M RR++++W +IS F+ G +K F
Sbjct: 259 ALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYP 318
Query: 287 ---FFVSLLSGCSHSGPVTKGKHYFTAM----AKFTYTCYFVCMVDLLGLSGLLGEAKKL 339
FV++LS CSH+G V +GK YF M ++ CMVDLLG +G L EA++
Sbjct: 319 NGVIFVAILSACSHAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEF 378
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
I MP KP VIWG++L AC +H + R+L++L+ +
Sbjct: 379 IISMPEKPNSVIWGSMLSACRTHNDLNRGSWAFRHLIELEPR 420
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 184/447 (41%), Gaps = 108/447 (24%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYLF 50
KA SL+ ++IHA + I +F+ +L DD ++F +I R L
Sbjct: 116 KAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLE 175
Query: 51 TYNTMINGGV----------------RCLCVGN----------------IKMALHLHGLV 78
T+N I+ V R N + + + +HGLV
Sbjct: 176 TWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLV 235
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ F +D S+ ID + KC + +E I+F +M +
Sbjct: 236 FRSGFDTDVSVYNGLIDFYGKCKQIRSSE----------------------IIFAEMGMK 273
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+ VSW ++++ ++ + ++ S + ++ SA A + LE G +H
Sbjct: 274 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIH 333
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ V ++FVGS L+D MY + G + ++ AF+ M
Sbjct: 334 AHAVKACVERNIFVGSALVD----------------------MYGKCGCIEDSEQAFDEM 371
Query: 259 SRRNMISWMVLISAFSQAGVLE---------KPR------FFFFFVSLLSGCSHSGPVTK 303
+N+++ LI ++ G ++ PR + FVSLLS CS +G V
Sbjct: 372 PEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVEN 431
Query: 304 GKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F +M K TY ++ C+VD+LG +G++ +A + I +MP KPT +WGAL A
Sbjct: 432 GMKIFDSM-KSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNA 490
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H L L NL +LD K G+
Sbjct: 491 CRMHGKPHLGILAAENLFKLDPKDSGN 517
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%)
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
P R++VSW +++S L ++G L F E+ G + + F A AS+ G
Sbjct: 69 PARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGK 128
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLK 222
+H+ V LDVFVG DMY K
Sbjct: 129 QIHALAVKCGRILDVFVGCSAFDMYCK 155
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 157/365 (43%), Gaps = 54/365 (14%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT ++++ C + +KM +H + + I + I + K G+V+ A
Sbjct: 481 FTVTSVLSA---CANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRI 537
Query: 110 FLRMLNPSLFCWKF-----GIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFE 158
+ + L F G ++L +F M RD+++W MI ++G E
Sbjct: 538 MDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDE 597
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
+ F + G +S A SA AS+ L++G +H + + SL
Sbjct: 598 AMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIR---SLQ--------- 645
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAG 277
E S+ + A++T+YA GS A F+ + R+ I+W +I A +Q G
Sbjct: 646 ----------EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHG 695
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYF 320
+ E+ F +V +LS C+H+G V KGK Y+ M ++
Sbjct: 696 LGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHY 755
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
CMVDL +GLL EA + I MP P V+WG+LL AC N LAEL LL +D
Sbjct: 756 ACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDP 815
Query: 381 KVFGS 385
G+
Sbjct: 816 HNSGA 820
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 125/278 (44%), Gaps = 27/278 (9%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F +MP+RD VSW MI L R G ++ + TF+++ + GF S S+ A++
Sbjct: 302 VVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAME 361
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIG-----KALVT 240
G +H VV + S V V + ++ MY KCG + +Q+ +V+
Sbjct: 362 ACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVS 421
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF-------------F 286
+Y G + A FE M R+++SW +I+ ++Q G+ +FF F
Sbjct: 422 LYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAF 481
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEM 343
S+LS C++ + GK + + + C M L+ SG + A++++D+
Sbjct: 482 TVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQA 541
Query: 344 PSKPTCVI-WGALLGACCSHYNTKLAELVMRNLLQLDV 380
VI + ALL +TK A + + DV
Sbjct: 542 VVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDV 579
>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic [Vitis vinifera]
Length = 704
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/433 (24%), Positives = 177/433 (40%), Gaps = 104/433 (24%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFT 51
AC LKS+ +K+ +I++ L +L+ ++ D R+F ++ + + +
Sbjct: 140 ACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILS 199
Query: 52 YNTMING------------------------GVRCLC--------VGNIKMALHLHGLVK 79
+NT+I G G R +G I LH
Sbjct: 200 WNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSL 259
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
K D +A + IDM+ KCG+++ A+ +F +MPE+
Sbjct: 260 KTGVGGDVFVACALIDMYSKCGSIEDAQ----------------------CVFDQMPEKT 297
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
V WN++I+ HG+ E L + E+ + G + + ++ A + LE H+
Sbjct: 298 TVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHA 357
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+V LD+ + L+D+Y K G + A F++M
Sbjct: 358 GLVRHGFGLDIVANTALVDLYSKWG----------------------RIEDAKHVFDMMP 395
Query: 260 RRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKH 306
+N+ISW LI+ + G +E F F+++LS CS+SG +G
Sbjct: 396 HKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWE 455
Query: 307 YFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
F +M++ ++ CM++LLG GLL EA LI + P KPT +W ALL AC H
Sbjct: 456 IFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVH 515
Query: 363 YNTKLAELVMRNL 375
N +L + L
Sbjct: 516 KNFELGKFAAEKL 528
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/328 (22%), Positives = 126/328 (38%), Gaps = 64/328 (19%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY+ +++ C+ + +I+ + + DE + + MHVKCG
Sbjct: 133 TYDALVSA---CIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGM-------- 181
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+I +F +MPE++++SWNT+I L G FE F+ +W
Sbjct: 182 --------------MIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDF 227
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
S ++ T A A + + G LHS + DVFV LIDMY KC
Sbjct: 228 SDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKC------- 280
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--- 287
GS + A F+ M + + W +I+ ++ G E+ ++
Sbjct: 281 ---------------GSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMR 325
Query: 288 ----------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLG 334
F ++ C+ + K + + + V +VDL G +
Sbjct: 326 DSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIE 385
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSH 362
+AK + D MP K + W AL+ +H
Sbjct: 386 DAKHVFDMMPHK-NVISWNALIAGYGNH 412
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 170/397 (42%), Gaps = 74/397 (18%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHL-------------HGLVKK 80
IDD Y++F ++ + ++ MING VR + + L+L +G ++
Sbjct: 280 IDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQS 339
Query: 81 FYF-----------VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII--- 126
V D S I + CG D A F M+ + W I
Sbjct: 340 GRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYA 399
Query: 127 ------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
+ L MF +M ER++VSWN++I+ ++G FE L FI + G
Sbjct: 400 QAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVC 459
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A A++ L G LH + D+FV + A++T
Sbjct: 460 CLRASANLAALNVGVQLHHLTIKTGFGNDLFVKN----------------------AILT 497
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
MYA+ G +A+ F + ++++SW LI+ ++ G ++ F
Sbjct: 498 MYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVT 557
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDE 342
F LLS C+H G V +G + F +M + TY+ ++ C+++LLG G L EA +++
Sbjct: 558 FTGLLSACNHGGFVDQGLNLFKSMTE-TYSIKPQSEHYACVINLLGRVGRLEEAVEIVQG 616
Query: 343 MPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
M + + IWGALL AC H+N +LA+ LL L+
Sbjct: 617 MKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALE 653
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 140/298 (46%), Gaps = 48/298 (16%)
Query: 32 QLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAK 91
+L + ++F ++ + + ++N++++G + N KM L L F + + ++
Sbjct: 154 RLFREAKKLFDEMLVKNVVSWNSILSGYTK-----NGKMQLGLQF----FEAMGERNVVS 204
Query: 92 SS--IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRLLIMFQKMPERDL 140
+ +D +V G +D A F ++ P++ W +G + +F +MP ++L
Sbjct: 205 WNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNL 264
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSWN MI R + F+E+ + +++A + Y + G L +R
Sbjct: 265 VSWNAMIGAYVRENQIDDAYKLFMEMPEKD--------SVSWTAMINGY-VRVGKLLQAR 315
Query: 201 -VVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIG-----KALVTMYAEGGSTQK 250
++++ P ++ + +I+ YL+ G N I S I + +++T YA G T +
Sbjct: 316 EILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDE 375
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEK---------PRFFFFFVSLLSGCSHSG 299
A F+ M ++M+SW +I+A++QAG ++K R + SL++G +G
Sbjct: 376 ALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNG 433
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 119/286 (41%), Gaps = 36/286 (12%)
Query: 99 KCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRLLIMFQKMPERDLVSWNTMISI 149
+ G ++ A + FL+M ++ + K G I +F MP+R+LVSWN+MI+
Sbjct: 27 RSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAG 86
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ E + L++ F + + + +LE L + + + D
Sbjct: 87 YLHN----ELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQ---D 139
Query: 210 VFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
+ LI Y K + ++ ++++ Y + G Q FE M
Sbjct: 140 TVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGE 199
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAM 311
RN++SW +++ + G L+ FF +V++LSG +H G +T+ ++ F M
Sbjct: 200 RNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEM 259
Query: 312 AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ M+ + +A KL EMP K + V W A++
Sbjct: 260 PTKNLVSWN-AMIGAYVRENQIDDAYKLFMEMPEKDS-VSWTAMIN 303
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV--------- 289
++ G ++A F M+ RN++++ +ISA+++ G + R F +
Sbjct: 22 ISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWN 81
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
S+++G H+ V F M K +++T C + G L +A++L + +P K
Sbjct: 82 SMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRI----GELEKARELFNLLPDK 137
Query: 347 PTCVIWGALLG 357
V AL+
Sbjct: 138 QDTVCRNALIA 148
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 162/365 (44%), Gaps = 53/365 (14%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106
R+ F + G+ C +G +H + KF S+ ++ + IDM+ KC ++ A
Sbjct: 119 RFTFPFVIKSCSGLVCYNLGK-----QVHAHLCKFGPKSNITMENALIDMYTKCASLLDA 173
Query: 107 ESAFLRMLNPSLFCWK--------FGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGF 157
F M+ W G +R +F MP R +VSW MIS TR G
Sbjct: 174 HKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYA 233
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
+ L F ++ G + + A A + LE G +H
Sbjct: 234 DALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIH------------------- 274
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
MY C NG+ I AL+ MY++ G +A F+ MS+ ++ISW +I + G
Sbjct: 275 -MY--CDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHG 331
Query: 278 VLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYF 320
+ F F+ LLS C+H+G +G YF +M+K + ++
Sbjct: 332 KAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHY 391
Query: 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
C+VD+LG +G L +A +I++MP KP IWG+LL +C +H N +A + M +L +L+
Sbjct: 392 GCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEP 451
Query: 381 KVFGS 385
G+
Sbjct: 452 DDTGN 456
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 131/272 (48%), Gaps = 40/272 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F KMPE+ +V+WN+MIS ++GFG E + F + + G S + + SA A V
Sbjct: 175 VFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGA 234
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ G +H + L+V +G+ L++MY +C G+ K
Sbjct: 235 IGLGFWVHEYIARNCFDLNVVLGTALMNMYSRC----------------------GNVSK 272
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG------------VLEKPR-FFFFFVSLLSGCSH 297
A F+ M +N+++W +IS + G + PR FV++LS C+H
Sbjct: 273 AREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAH 332
Query: 298 SGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLI-DEMPSKPTCVIW 352
+G V +G+ FT M + + VCMVD+LG +G L EA + I + P +P +W
Sbjct: 333 AGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVW 392
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
A+LGAC H N L V +LL ++ + G
Sbjct: 393 TAMLGACKMHKNFDLGVEVAEHLLSIEPENPG 424
>gi|218192640|gb|EEC75067.1| hypothetical protein OsI_11193 [Oryza sativa Indica Group]
Length = 619
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 164/368 (44%), Gaps = 61/368 (16%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97
+ FC P Y TY ++ +C NI + +H + K +S++ I ++
Sbjct: 148 FTAFC---PDYR-TYVLLLKACAKC---SNIYAIMEIHSQLVKLGLLSNQRIVTHLFKLY 200
Query: 98 VKCGAVDYAESAFLRMLNPS-------------LFCWKFGIIRLLIMFQKMPERDLVSWN 144
+ G V A F ML S L C + I + +F++MP +DLVSWN
Sbjct: 201 IDHGRVMEACKLFWLMLEWSAEPFYGNLMLMGFLKCGQ--IDKAYQIFKRMPVKDLVSWN 258
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
+MI+ R+ + + F +L N G +++ SA A +G +H + +
Sbjct: 259 SMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSFSSVLSACAQAGARCYGMWVHQLMAEL 318
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
++ + S L+DMY KCG I+ +I I F+ + R ++
Sbjct: 319 GLEMNHILSSSLVDMYAKCG--RIDVAIGI--------------------FKTIKRNHVS 356
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
W +I + G+ FF FV+LL+ CSHSG V + + YF AM
Sbjct: 357 VWNTMIGGLAAHGLGSDAVMFFREMESEGLVPDGVTFVALLTACSHSGMVEEARQYFEAM 416
Query: 312 A-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
K++ T ++ MVD L +GLL EA L+ M KP VIW ALL ACC + TKL
Sbjct: 417 TTKYSITPRIEHYGAMVDTLSRAGLLDEAYDLVKTMNVKPDAVIWRALLSACCRYRQTKL 476
Query: 368 AELVMRNL 375
E+ ++ +
Sbjct: 477 GEITVKEI 484
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 66/228 (28%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVG---NIKMALHLHGLVKK-FYFVS---- 85
ID Y++F + + L ++N+MI G R C+ NI L GLV F F S
Sbjct: 239 IDKAYQIFKRMPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSFSSVLSA 298
Query: 86 ------------------------DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
+ ++ S +DM+ KCG +D A
Sbjct: 299 CAQAGARCYGMWVHQLMAELGLEMNHILSSSLVDMYAKCGRIDVA--------------- 343
Query: 122 KFGIIRLLIMFQKMPERDLVS-WNTMISILTRHGFGFETLCTFIELWNHGF---GLSSML 177
GI + + +R+ VS WNTMI L HG G + + F E+ + G G++ +
Sbjct: 344 -IGIFKTI-------KRNHVSVWNTMIGGLAAHGLGSDAVMFFREMESEGLVPDGVTFVA 395
Query: 178 YATAFS-------ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
TA S AR + + R+ H +D +GL+D
Sbjct: 396 LLTACSHSGMVEEARQYFEAMTTKYSITPRIEHYGAMVDTLSRAGLLD 443
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 144/329 (43%), Gaps = 61/329 (18%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+++ +HG + + DE + + +D++ KCG++D A
Sbjct: 236 LRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARG------------------- 276
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F +M +RD+VSW TMI G E F +L G + +A +A A
Sbjct: 277 ---IFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACAD 333
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
G +H ++H F S L+ MY KCG +
Sbjct: 334 HAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCG----------------------N 371
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294
T+ A F M + +++SW LI ++Q G ++ FF +V +LS
Sbjct: 372 TRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSA 431
Query: 295 CSHSGPVTKGKHYFTAMAK---FTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C+H+G V KG YF ++ + +T ++ C++DLL SG EA+ +ID MP KP
Sbjct: 432 CTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKF 491
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLD 379
+W +LLG C H N +LA+ + L +++
Sbjct: 492 LWASLLGGCRIHGNLELAKRAAKALYEIE 520
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 133/331 (40%), Gaps = 52/331 (15%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
Y+T+I VR +++ +H K FV I+ +DM+ KCG++ A+ F
Sbjct: 90 YSTLIAACVRHRA---LELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFD 146
Query: 112 RMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
M + L W I+ + +F +MP+RD SWN IS H E L
Sbjct: 147 EMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALEL 206
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYD-LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F + H S+ ++ A ++ L G +H ++ E +LD V S L+D+Y
Sbjct: 207 FRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYG 266
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
KC GS +A F+ M R+++SW +I + G E+
Sbjct: 267 KC----------------------GSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREE 304
Query: 282 PRFFF-------------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV-CMVD 325
F F +L+ C+ GK H + A + + + +V
Sbjct: 305 GFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVH 364
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ G A+++ +EM +P V W +L+
Sbjct: 365 MYSKCGNTRVARRVFNEM-HQPDLVSWTSLI 394
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 150/353 (42%), Gaps = 51/353 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C ++K+ +H + + ++ + I M+ K GAV+ A PSL
Sbjct: 288 CANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVI 347
Query: 122 KF-----------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
F I +F + RD+V+W MI ++G + L F + G
Sbjct: 348 AFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREG 407
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
++ A S +S+ L+ G LH+ + +E S
Sbjct: 408 PKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEV----------------------S 445
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFE-LMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
S+ +G AL+TMY+ GS + A F + S R+ ++W +I + +Q G+ + F
Sbjct: 446 SVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKM 505
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
+V +LS C+H G V +GK YF M + ++ CM+DLLG +GL
Sbjct: 506 LRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGL 565
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
L EA I MP +P V WG+LL +C H LA++ LL +D G+
Sbjct: 566 LEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGA 618
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/367 (20%), Positives = 148/367 (40%), Gaps = 41/367 (11%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T N C + + +H V K +A S ++M+ KCG A+ F RM
Sbjct: 147 TFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRM 206
Query: 114 LNPSLFCWKFGIIR---------LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF- 163
W I L +F +M + D+VSWN++I+ G+ L TF
Sbjct: 207 RLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFS 266
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
L + + SA A+ L+ G +H+ +V + + VG+ LI MY K
Sbjct: 267 FMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKS 326
Query: 224 GCNGIESSIQIGK-------------ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
G +E + +I + +L+ Y + G A F+ + R++++W +I
Sbjct: 327 G--AVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMI 384
Query: 271 SAFSQAGVL------------EKPR-FFFFFVSLLSGCSHSGPVTKGKHYFTA---MAKF 314
++Q G++ E P+ + ++LS S + GK + +
Sbjct: 385 VGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEV 444
Query: 315 TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374
+ ++ + SG + +A+K+ + + S + W +++ + H A +
Sbjct: 445 SSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEK 504
Query: 375 LLQLDVK 381
+L++++K
Sbjct: 505 MLRINLK 511
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 32/245 (13%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWN 144
++++VK G+ A F M + F W + +F ++P+ D VSW
Sbjct: 55 LNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWT 114
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
TMI G + F+ + + G + + ++ A+ L+ G +HS VV +
Sbjct: 115 TMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKL 174
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSI---------QIGKALVTMYAEGGSTQKADLAF 255
S V V + L++MY KCG + + + +++M+ + A F
Sbjct: 175 GQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALF 234
Query: 256 ELMSRRNMISWMVLISAFSQAG----VLEKPRFF----------FFFVSLLSGCSHSGPV 301
+ M+ +++SW +I+ + G LE F F S+LS C++ +
Sbjct: 235 DQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESL 294
Query: 302 TKGKH 306
GK
Sbjct: 295 KLGKQ 299
Score = 37.7 bits (86), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/187 (19%), Positives = 79/187 (42%), Gaps = 27/187 (14%)
Query: 197 LHSRVV-HMEPSLDVFVGSGLIDMYLKCGCNG------IESSIQIG---KALVTMYAEGG 246
+H+R++ H L VF+ + L+++Y+K G + E ++ +++ +A+ G
Sbjct: 34 IHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAG 93
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLS 293
+ A F+ + + + +SW +I ++ G+ + F F ++L+
Sbjct: 94 NLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLA 153
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE---AKKLIDEMPSKPTCV 350
C+ + + GK + + K + LL + G+ AK + D M K T
Sbjct: 154 SCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTST 213
Query: 351 IWGALLG 357
W ++
Sbjct: 214 -WNTMIS 219
>gi|125597302|gb|EAZ37082.1| hypothetical protein OsJ_21424 [Oryza sativa Japonica Group]
Length = 671
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 142/335 (42%), Gaps = 63/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +++ +H K +F D + + + ++ KCG + +E
Sbjct: 319 CSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSE-------------- 364
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
I+F + +D +SW +++ ++ E L F E+ G S +
Sbjct: 365 --------IVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSV 416
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A ++ L G +HSRVV + G++ + ALVTM
Sbjct: 417 LRACSATSSLSCGWQIHSRVVKL----------------------GVDDDTSVENALVTM 454
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFF 288
YA+ G Q A F M R +ISW LI++FSQ G + + F + F
Sbjct: 455 YAKCGVVQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTF 514
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
V LLS CS G V +G YF M K Y ++ CMVDL +G +A K ID M
Sbjct: 515 VGLLSSCSRMGLVAEGCEYFKQM-KTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAM 573
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P +P ++W ALL +C H N L + + +L++
Sbjct: 574 PCQPDQLVWEALLASCRVHGNLDLGRMAAKKILEI 608
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 125/325 (38%), Gaps = 66/325 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT ++ G C + +H K DES+A + +DM+ KCG V + A
Sbjct: 106 FTVAALVAG---CARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRA 162
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIELWN 168
F+ P+R ++SW +MI+ L HG G+ T I L+
Sbjct: 163 FVL----------------------TPQRSVLSWTSMIACLVNHGDSGYRD--TAIVLFK 198
Query: 169 HGFGLSSMLYATAFSARASVYD----LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
L FS V+D L G +H +V M +D +G+ L+ MY +CG
Sbjct: 199 KMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCG 258
Query: 225 CNGIESSIQIG----------KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
G++ ++ +L+T YA G +A F M +M
Sbjct: 259 --GMDEITRLACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHM--------PID 308
Query: 275 QAGVLEKPRFFFFFVSLLSGCSHSGP--VTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSG 331
Q+ + SLL CS G V K H + F T +V + G G
Sbjct: 309 QSAI----------TSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCG 358
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALL 356
+ ++ + + + +K T + W ALL
Sbjct: 359 DIASSEIVFNTLENKDT-ISWTALL 382
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 24/149 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG--LSSMLYATAFSARASV 188
+F +MP R++VSW+ +I+ +R G + L F + G +S A + A
Sbjct: 59 VFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARA 118
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
D G +H+ V + D V L+DMY KCG GS+
Sbjct: 119 KDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCG-------------------RVGSS 159
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG 277
+ AF L +R+++SW +I+ G
Sbjct: 160 WR---AFVLTPQRSVLSWTSMIACLVNHG 185
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 36/188 (19%)
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
H H R VH G+ + K GC +S + L+ Y G A F
Sbjct: 18 HSHPRAVH---------GAAV-----KLGC---LASTYLCNNLLLSYQARGHLADARGVF 60
Query: 256 ELMSRRNMISWMVLISAFSQAGVL--------------EKPRFFFFFV-SLLSGCSHSGP 300
+ M RRN++SW VLI+A S+ GVL E+ R F V +L++GC+ +
Sbjct: 61 DEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKD 120
Query: 301 VTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
G+ + K +VD+ G +G + + P + + + W +++
Sbjct: 121 AVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQR-SVLSWTSMIA 179
Query: 358 ACCSHYNT 365
+H ++
Sbjct: 180 CLVNHGDS 187
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 168/403 (41%), Gaps = 86/403 (21%)
Query: 15 KIHAQLISTCLI----SSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVG---- 66
+IHA ++ T ++ SS + +I Y ++ LF Y M+ G+ C
Sbjct: 212 QIHAHVLRTNMLENHPSSFYWNIIIRSYTRL-EVPRIALFVYIAMLQAGILPDCYTLPIV 270
Query: 67 --------NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL 118
+ L LH + + F D+ I ++ K G ++ A
Sbjct: 271 FKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECA------------ 318
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
+F++ R L SWN +I+ L++ G E + FI+L G
Sbjct: 319 ----------CKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTI 368
Query: 179 ATAFSARASVYDLEWGPHLHSRV--VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ SA S+ +LE +H V V + ++ + + LIDMY KCG
Sbjct: 369 VSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCG------------ 416
Query: 237 ALVTMYAEGGSTQKADLA---FELMSRRNMISWMVLISAFSQAGVLEK------------ 281
+ DLA F M RN+ SW LI ++ G +++
Sbjct: 417 -------------RMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAG 463
Query: 282 -PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEA 336
P FV +LS C H G + +GKHYF M ++ CMVDLL +GLL EA
Sbjct: 464 VPPNQVTFVGVLSACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEA 523
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+++I+EMP K +IWG L+G C H N ++ E ++L +L+
Sbjct: 524 RRMIEEMPMKANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELE 566
>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 510
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 186/422 (44%), Gaps = 81/422 (19%)
Query: 8 KSLPIARKIHAQLISTCLISSIFL--QLIDD-----------DYRVFCDIGPRYLFTYNT 54
K++ ++ HAQ+I F+ +LID +VF D+ R +F +N
Sbjct: 31 KTIDRIKQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNN 90
Query: 55 MINGGVRCLCVGNIKMALHLHGLVK---------KFYFV-----SDESIAKSSIDMH--- 97
+I G +G ALH++ ++ + FV ++ K I +H
Sbjct: 91 VIKGYAN---MGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRI-IHGNV 146
Query: 98 VKCG-AVD-YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF 155
VKCG D + +AF+ C + R + F +M ERD+VSWN+M+S +G+
Sbjct: 147 VKCGLEFDLFVGNAFVAFYAK---CKEIEASRKV--FDEMLERDIVSWNSMMSGYIANGY 201
Query: 156 GFETLCTFIE-LWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
E + F + L + G G + T A A D+ G +H +V LD VG
Sbjct: 202 VDEAVMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVG 261
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
GLI +Y CG I++ KA+ F+ + RN+I W +I +
Sbjct: 262 CGLITLYSNCG------YIRMAKAV----------------FDQIPDRNVIVWSAIIRCY 299
Query: 274 SQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT--- 317
G ++ F F+SLLS CSH+G +G H F M +
Sbjct: 300 GMHGFAQEALSMFRQLVELGLHLDGIVFLSLLSACSHAGMHEEGWHLFQTMETYGVVKGE 359
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
++ CMVDLLG +G L +A +LI MP +P ++GALLGA H N +LAEL L
Sbjct: 360 AHYACMVDLLGRAGNLEKAMELIQSMPIQPGKNVYGALLGASRIHKNIELAELAAEKLFV 419
Query: 378 LD 379
LD
Sbjct: 420 LD 421
>gi|302796767|ref|XP_002980145.1| hypothetical protein SELMODRAFT_112044 [Selaginella moellendorffii]
gi|300152372|gb|EFJ19015.1| hypothetical protein SELMODRAFT_112044 [Selaginella moellendorffii]
Length = 434
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 142/314 (45%), Gaps = 58/314 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C GN+ H F +DES+ S ++M+ KCG+V+ A
Sbjct: 124 CSWQGNLGTGRLFHRRAIASGFHTDESLKNSLVNMYSKCGSVEEARQ------------- 170
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F + R +S + MI+ L ++GF E L + E+ G ++M + +
Sbjct: 171 ---------VFDSIAPRTAISCSVMITTLAQNGFYREALELYREMQEEGLESNNMTFLSL 221
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A++ L G +H+ ++ + D+ + + L+ MY KC G++ + ++
Sbjct: 222 LEASANLTALGQGRRIHASIIDYGLARDLLIQTALMYMYGKCA--GLDEAREV------- 272
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
FE M R+N+++W +I+A+SQ G E+ F +
Sbjct: 273 -------------FESMERKNVVAWTSIIAAYSQHGHCEESLELFRRMALDGVMPNEVTY 319
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
+LLS CSH+G V + F M T ++ CMVD LG +G L EA+ L++ MP +P
Sbjct: 320 GTLLSTCSHAGLVDEAYDNFVEMKNPRLT-HYRCMVDALGRAGKLDEAEDLLNNMPFEPD 378
Query: 349 CVIWGALLGACCSH 362
V W LGAC +H
Sbjct: 379 SVAWVLFLGACKTH 392
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 103/248 (41%), Gaps = 36/248 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP R++VSWN MI +HG G + + F L G ++ + F A
Sbjct: 67 VFDAMPARNIVSWNAMIEAYAQHGRGADAIAVFRLLELEGTFQANKI---TFLALIEACS 123
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
W +L G+G + + + +G + + +LV MY++ GS ++
Sbjct: 124 CSWQGNL---------------GTGRL-FHRRAIASGFHTDESLKNSLVNMYSKCGSVEE 167
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A F+ ++ R IS V+I+ +Q G + + F+SLL ++
Sbjct: 168 ARQVFDSIAPRTAISCSVMITTLAQNGFYREALELYREMQEEGLESNNMTFLSLLEASAN 227
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGL---LGEAKKLIDEMPSKPTCVIWGA 354
+ +G+ ++ + + L+ + G L EA+++ + M K V W +
Sbjct: 228 LTALGQGRRIHASIIDYGLARDLLIQTALMYMYGKCAGLDEAREVFESMERK-NVVAWTS 286
Query: 355 LLGACCSH 362
++ A H
Sbjct: 287 IIAAYSQH 294
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG---- 277
K G++ + + A+V+ YA G+ A F+ M RN++SW +I A++Q G
Sbjct: 35 KITAAGMDRDVLVATAVVSAYARCGAIASAREVFDAMPARNIVSWNAMIEAYAQHGRGAD 94
Query: 278 ------VLEKPRFF----FFFVSLLSGCSHS--GPVTKGK--HYFTAMAKF-TYTCYFVC 322
+LE F F++L+ CS S G + G+ H + F T
Sbjct: 95 AIAVFRLLELEGTFQANKITFLALIEACSCSWQGNLGTGRLFHRRAIASGFHTDESLKNS 154
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSK 346
+V++ G + EA+++ D + +
Sbjct: 155 LVNMYSKCGSVEEARQVFDSIAPR 178
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 153/342 (44%), Gaps = 62/342 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + K +H V K F SD + + DM+ K G ++ A + F
Sbjct: 152 CGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF----------- 200
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
GI R++VS+ +I + L F+EL G + +++
Sbjct: 201 --GIDSEC--------RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSL 250
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A+ LE G LH++V+ + D FV S L+DMY KCG +E +IQ
Sbjct: 251 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGL--LEQAIQ-------- 300
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
AF+ + I+W L+S F Q G+ + F F
Sbjct: 301 ------------AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF 348
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
+SLL+GCSH+G V +G YF +M K TY ++ C++DLLG +G L EAK+ I+ M
Sbjct: 349 ISLLTGCSHAGLVEEGLDYFYSMDK-TYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 407
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
P +P W + LGAC H + ++ +L L++L+ K G+
Sbjct: 408 PFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 449
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 143/349 (40%), Gaps = 65/349 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F +++ I C +G+I+M +H L KF S+ + + DM+ KCGA+
Sbjct: 42 FAFSSAIRA---CASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAM------ 92
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F ++ F++MP +D VSW MI ++ G E L F ++ +
Sbjct: 93 -------------FDACKV---FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDE 136
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + + A ++ ++G +HS VV + D+FVG+ L DMY K
Sbjct: 137 EVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSK------- 189
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSR-RNMISWMVLISAFSQAGVLEKPRFFFF- 287
G + A F + S RN++S+ LI + + +EK F
Sbjct: 190 ---------------AGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVE 234
Query: 288 ------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVC--MVDLLGLSGL 332
F SL+ C++ + +G + K + FV +VD+ G GL
Sbjct: 235 LRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGL 294
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
L +A + DE+ PT + W +L+ H K A + ++ VK
Sbjct: 295 LEQAIQAFDEI-GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVK 342
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MP+R+LVSW MIS L+++ E + TF + G + +++A A AS+ +E G
Sbjct: 1 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H + ++FVGS L DMY KCG M+ A
Sbjct: 61 KQMHCLALKFGIGSELFVGSNLEDMYSKCG---------------AMF-------DACKV 98
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
FE M ++ +SW +I +S+ G E+ F
Sbjct: 99 FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAF 130
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 66/220 (30%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFL-QLIDDDYRVFCDIGP-----------RYLF 50
ACG+LK+ R +H+ ++ S IF+ + D Y D+ R +
Sbjct: 151 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 210
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
+Y +I+G V C ++ LH V
Sbjct: 211 SYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 270
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
K F D ++ +DM+ KCG ++ A AF + +P+
Sbjct: 271 MKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPT--------------------- 309
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
++WN+++S+ +HG G + + F + + G +++ +
Sbjct: 310 -EIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF 348
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 158/377 (41%), Gaps = 70/377 (18%)
Query: 36 DDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYF--------VSDE 87
D +R CD G R T+++ C+ VG + H KF D
Sbjct: 486 DVFRQMCDCGSRPNVV--TLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDL 543
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+ IDM+ KC + + A F ++P +RD+V+W MI
Sbjct: 544 KVINGLIDMYAKCQSTEVARKMF-DSVSPK-------------------DRDVVTWTVMI 583
Query: 148 SILTRHGFGFETLCTFIELW--NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
+HG L F ++ + + + A A A + L +G +H+ V
Sbjct: 584 GGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYV---- 639
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
L F GS ++ + L+ MY++ G A + F+ M +RN +S
Sbjct: 640 --LRNFYGSVML---------------FVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVS 682
Query: 266 WMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMA 312
W L++ + G E R F F+ +L CSHSG V G ++F M+
Sbjct: 683 WTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMS 742
Query: 313 KF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
K ++ CMVDL G +G LGEA KLI+EMP +PT V+W ALL AC H N +L
Sbjct: 743 KDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELG 802
Query: 369 ELVMRNLLQLDVKVFGS 385
E LL+L+ GS
Sbjct: 803 EFAANRLLELESGNDGS 819
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 134/319 (42%), Gaps = 51/319 (15%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII------ 126
+HG + V D + + +DM+ KCG ++ A F RM + W +
Sbjct: 385 QVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAG 444
Query: 127 RL---LIMFQKMPER----DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
RL L +F++M E D+V+W +I+ + G G E L F ++ + G + +
Sbjct: 445 RLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLV 504
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ SA SV L G H + +LD G + +++ L+
Sbjct: 505 SLLSACVSVGALLHGKETHCYAIKFILNLD--------------GPDPGADDLKVINGLI 550
Query: 240 TMYAEGGSTQKADLAFELMS--RRNMISWMVLISAFSQAGVLE----------------K 281
MYA+ ST+ A F+ +S R++++W V+I ++Q G K
Sbjct: 551 DMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIK 610
Query: 282 PRFFFFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAK 337
P F +L++ C+ + G+ H + + FV C++D+ SG + A+
Sbjct: 611 PNDFTLSCALVA-CARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQ 669
Query: 338 KLIDEMPSKPTCVIWGALL 356
+ D MP + V W +L+
Sbjct: 670 IVFDNMPQR-NAVSWTSLM 687
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 133/348 (38%), Gaps = 60/348 (17%)
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H V + F S+ + + + M+ KCGA+ +A + F + + +
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGI---------------- 325
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGFGLSSMLYATAFSARASVYDLEW 193
+DLVSWN+++S L F ++ H + A AS+
Sbjct: 326 ---QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLR 382
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIG-----KALVTMYAE 244
G +H + DVFVG+ ++DMY KCG N + ++ A+VT Y++
Sbjct: 383 GRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQ 442
Query: 245 GGSTQKADLAFELMSRRNM----ISWMVLISAFSQAG----VLE----------KPRFFF 286
G + A FE M+ N+ ++W +I+ ++Q G L+ +P
Sbjct: 443 AGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPN-VV 501
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----------YFVCMVDLLGLSGLLGE 335
VSLLS C G + GK KF ++D+
Sbjct: 502 TLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEV 561
Query: 336 AKKLIDEM-PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
A+K+ D + P V W ++G H + A + + ++D +
Sbjct: 562 ARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSI 609
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 57/310 (18%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
SI ID++ CG ++ A+ F ML+ + M +R +VSWN+MI
Sbjct: 143 SIRIGIIDLYTSCGRMEDAKKVFDEMLD-----------------RDMRDRSVVSWNSMI 185
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ L + G E L F E+W+HGF T A + ++ G +HS
Sbjct: 186 AGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLL 245
Query: 208 LD-VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
D + VG+ L+D Y KCG +E++ ++ F M ++N++SW
Sbjct: 246 RDFISVGNSLVDFYCKCGI--LETAWRV--------------------FNEMPQKNVVSW 283
Query: 267 MVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMA- 312
+IS + G E F FV +LS C+H+G V +G++ FT+M
Sbjct: 284 NAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTV 343
Query: 313 --KFTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
K +F CMVDLL +G + EA+ L+ MP +P V+WG+LL A + + K AE
Sbjct: 344 DHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTIGDVKHAE 403
Query: 370 LVMRNLLQLD 379
++ L++L+
Sbjct: 404 CAVKELIELE 413
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 157/351 (44%), Gaps = 61/351 (17%)
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
+TM++ C +I++ +H + F S+ I + ID+++KCG V+ A
Sbjct: 221 STMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA------ 274
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
C +F+ + +D++SWNT+I T E L F E+ G
Sbjct: 275 -------CG---------LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 318
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + + A A + +E G +H +Y+ G+ ++
Sbjct: 319 PNDVTMLSILPACAHLGAIEIGRWIH--------------------VYINKRLKGVANAS 358
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+L+ MYA+ G + A F+ + R++ SW +I F+ G F
Sbjct: 359 SHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKN 418
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLG 334
FV LLS CSHSG + G+H F +M K Y ++ CM+DLLG SGL
Sbjct: 419 EIEPDDITFVGLLSACSHSGMLDLGRHIFRSM-KEDYKITPKLEHYGCMIDLLGHSGLFK 477
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
EA+++I+ M +P VIW +LL AC H N +L E +NL++++ K GS
Sbjct: 478 EAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGS 528
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 124/311 (39%), Gaps = 50/311 (16%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KF 123
+HG V K + D + S I M+V+ G ++ A F + + + + K
Sbjct: 109 QIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKG 168
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
I MF ++P +D+VSWN MIS G E L F E+ + S
Sbjct: 169 YIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVS 228
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A +E G +HS + ++ + + LID+Y+KC
Sbjct: 229 ACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC-------------------- 268
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
G + A FE +S +++ISW LI ++ + ++ F +S
Sbjct: 269 --GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLS 326
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK-----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+L C+H G + G+ + K + + ++D+ G + A+++ D + +
Sbjct: 327 ILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILN 386
Query: 346 KPTCVIWGALL 356
+ + W A++
Sbjct: 387 R-SLSSWNAMI 396
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 113/280 (40%), Gaps = 28/280 (10%)
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
G+ + +F+ + E +L+ WNTM L ++ + + G + +
Sbjct: 37 GLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLK 96
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI--------- 234
+ A G +H V+ + LD++V + LI MY++ G +E + ++
Sbjct: 97 SCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNG--RLEDARKVFDQSSHRDV 154
Query: 235 --GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
AL+T YA G A F+ + ++++SW +IS +++ G ++ F
Sbjct: 155 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 214
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKL 339
VS++S C+ S + G+ + + + + L+ L GE +
Sbjct: 215 NVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 274
Query: 340 --IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+ E S + W L+G K A L+ + +L+
Sbjct: 275 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 314
>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
Length = 1134
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 157/351 (44%), Gaps = 66/351 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKK--FYFVSDESIAKSSIDMHVKCGAVDYAE 107
FT +++ C G I +HG + + F+ S +I S +D++VKCG + A
Sbjct: 574 FTLTSLLKA---CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSAR 630
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
AF ++ E+ ++SW+++I + G E + F L
Sbjct: 631 KAF----------------------DQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQ 668
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ S + ++ A L+ G + + VV + L+ V + L+DMYLKCG
Sbjct: 669 ELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGL-- 726
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
+A+ F M +++ISW V+I+ + + G+ +K F
Sbjct: 727 --------------------VDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFN 766
Query: 288 -------------FVSLLSGCSHSGPVTKGKHYFTAMAKFT----YTCYFVCMVDLLGLS 330
++++LS CSHSG + +G+ F+ + + ++ C+VDLLG +
Sbjct: 767 KMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRA 826
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
G L EAK L+D MP KP IW LL C H + +L + V + LL++D K
Sbjct: 827 GRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGK 877
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 45/247 (18%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MPER++VSW ++S +G +L F E+ G + ++T A +
Sbjct: 426 VFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNA 485
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H + + + V VG+ L+DMY KC G +
Sbjct: 486 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC----------------------GRINE 523
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG----------------VLEKPRFFFFFVSLLSG 294
A+ F M R++ISW +I+ + AG + E+P F SLL
Sbjct: 524 AEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPD-EFTLTSLLKA 582
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCYFVC-----MVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CS +G + GK + + + C +VDL G L A+K D++ K T
Sbjct: 583 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEK-TM 641
Query: 350 VIWGALL 356
+ W +L+
Sbjct: 642 ISWSSLI 648
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 138/358 (38%), Gaps = 80/358 (22%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT++T + C + ++ L +HG K F + S +DM+ KCG ++ AE
Sbjct: 471 FTFSTNLKA---CGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKV 527
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF------ 163
F W G R L+SWN MI+ G+G L TF
Sbjct: 528 FR---------WMVG-------------RSLISWNAMIAGYVHAGYGSRALATFGMMQEA 565
Query: 164 -IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME---PSLDVFVGSGLIDM 219
I+ F L+S+L A S+ +Y G +H +V PS GS L+D+
Sbjct: 566 KIKERPDEFTLTSLLKAC--SSTGMIYA---GKQIHGFLVRSGFHCPSSATITGS-LVDL 619
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
Y+KCG +++ A AF+ + + MISW LI ++Q G
Sbjct: 620 YVKCG---------------NLFS-------ARKAFDQIKEKTMISWSSLILGYAQEGDF 657
Query: 280 EKPRFFFFFVSLLSGCSHS-------------GPVTKGKHYFTAMAKFT---YTCYFVCM 323
+ F + LS S + +GK + K T +
Sbjct: 658 VEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSL 717
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
VD+ GL+ EA+K EM K + W ++ H K A + +L+ +++
Sbjct: 718 VDMYLKCGLVDEAEKCFAEMQLKDV-ISWTVMITGYGKHGLGKKAVSIFNKMLRHNIE 774
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 159/360 (44%), Gaps = 63/360 (17%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMAL--HLHGLVKKFYFVSDESIAKSSIDM 96
+FC + + N V C + + L +H V K S+ ++ + +D+
Sbjct: 292 ELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDV 351
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ KCG ++ + + +F E++ V+WNT+I + G G
Sbjct: 352 YAKCGEIENS----------------------VKLFTGSTEKNEVAWNTIIVGYVQLGDG 389
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
+ L F + + + Y++ A AS+ LE G +HS + + D V + L
Sbjct: 390 EKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSL 449
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
IDMY KCG A L F+ M +++ +SW LI +S
Sbjct: 450 IDMYAKCG----------------------RIDDARLTFDKMDKQDEVSWNALICGYSIH 487
Query: 277 GV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF--TYTC--Y 319
G+ +E F FV +LS CS++G + KG+ +F +M + C +
Sbjct: 488 GLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEH 547
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ CMV LLG SG EA KLI E+P +P+ ++W ALLGAC H N L ++ + +L+++
Sbjct: 548 YTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEME 607
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 136/340 (40%), Gaps = 63/340 (18%)
Query: 35 DDDYRVFCDIGPRYLFTYNTMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D +FC + N I+ ++ C + K+ +HG K + D + +
Sbjct: 187 EDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIAL 246
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
++++ K G + A+ F++MP+ DL+ W+ MIS +
Sbjct: 247 LELYTKSGEIAEAQQ----------------------FFEEMPKDDLIPWSLMISRYAQS 284
Query: 154 GFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
E L F + + ++ +A+ A AS+ L G +HS V+ + +VFV
Sbjct: 285 DKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFV 344
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
+ L+D+Y KCG IE+S+++ GST+K N ++W +I
Sbjct: 345 SNALMDVYAKCG--EIENSVKLFT---------GSTEK-----------NEVAWNTIIVG 382
Query: 273 FSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY 319
+ Q G EK F + S+L + + G+ + K Y
Sbjct: 383 YVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKD 442
Query: 320 FVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V ++D+ G + +A+ D+M K V W AL+
Sbjct: 443 SVVANSLIDMYAKCGRIDDARLTFDKM-DKQDEVSWNALI 481
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 80/205 (39%), Gaps = 44/205 (21%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131
L +H V K +D + + ID + CG VD A +
Sbjct: 124 LSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQ----------------------V 161
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F + +D+VSW M++ + ++L F ++ G+ ++ + A + +
Sbjct: 162 FDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAF 221
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
+ G +H + + D++VG L+++Y K G +A
Sbjct: 222 KVGKSVHGCALKVCYDRDLYVGIALLELYTK----------------------SGEIAEA 259
Query: 252 DLAFELMSRRNMISWMVLISAFSQA 276
FE M + ++I W ++IS ++Q+
Sbjct: 260 QQFFEEMPKDDLIPWSLMISRYAQS 284
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+T+++++ C + ++ LH L K + + + I+M+ C VD A
Sbjct: 136 YTFSSLLKA---CARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARR- 191
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F K+ E +V++N +I+ R+ E L F EL
Sbjct: 192 ---------------------VFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQES 230
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G + + A S+ A + L+ G +H V NG +
Sbjct: 231 GLKPTDVTMLVALSSCALLGALDLGRWIHEYVKK----------------------NGFD 268
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----------VL 279
+++ AL+ MYA+ GS A F+ M RR+ +W +I A++ G +
Sbjct: 269 QYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREM 328
Query: 280 EKPRF---FFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGL 332
+K + F+ +L CSH+G V +G YF +M ++ CM+DLLG +G
Sbjct: 329 KKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGR 388
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L EA K IDE+P KPT ++W LL +C SH N ++A+LV++ + +LD
Sbjct: 389 LEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELD 435
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 110/258 (42%), Gaps = 21/258 (8%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
MF K+P+ D+V +NTM R + ++ G +++ A A +
Sbjct: 91 MFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKA 150
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS----IQIGKALVTMYAEGG 246
LE G LH V + +++V LI+MY CN ++++ +IG+ V Y
Sbjct: 151 LEEGKQLHCLAVKLGVGDNMYVCPTLINMYT--ACNDVDAARRVFDKIGEPCVVAYNAII 208
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK- 305
++ + SR N + L ++G+ KP V+ LS C+ G + G+
Sbjct: 209 TSCARN------SRPN--EALALFRELQESGL--KPTDVTMLVA-LSSCALLGALDLGRW 257
Query: 306 -HYFTAMAKF-TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
H + F Y ++D+ G L +A + +MP + T W A++ A +H
Sbjct: 258 IHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQA-WSAMIVAYATHG 316
Query: 364 NTKLAELVMRNLLQLDVK 381
+ A ++R + + V+
Sbjct: 317 HGSQAISMLREMKKAKVQ 334
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 165/360 (45%), Gaps = 57/360 (15%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA-KSSIDMHVKCGAVDY 105
R + ++N MI+G V+ + +G+ +M V + I+ + I+ + G +D
Sbjct: 259 RDVVSWNAMIDGYVKHVEMGHARMVFD--------RMVCRDVISWNTMINGYAIVGKIDE 310
Query: 106 AESAFLRMLNPSLFCWK---FGIIR------LLIMFQKMPERDLVSWNTMISILTRHGFG 156
A+ F M +L W G ++ +F +MP RD+VSWN+M++ + G
Sbjct: 311 AKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKP 370
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L F ++ G + + SA A + L+ G HLH+ + ++ VG+ L
Sbjct: 371 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTAL 430
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+DMY KCG I + Q+ F M +++++W +I+ +
Sbjct: 431 VDMYAKCG--KISLATQV--------------------FNAMESKDVLAWNTIIAGMAIH 468
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
G +++ + F FV++LS CSH+G V +G+ M+ +
Sbjct: 469 GNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 528
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ C++DLL +G L EA +LI MP +P GALLG C H N +L E+V + L+ L
Sbjct: 529 YGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 588
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+G E I +L+ +YA G A F L S R+++SW +I + + + R
Sbjct: 224 SGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMV 283
Query: 286 F---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEA 336
F + ++++G + G + + K F M + + + + G + +A
Sbjct: 284 FDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKC-GNVEDA 342
Query: 337 KKLIDEMPSKPTCVIWGALLG--ACCSHYNTKLA 368
L EMP + V W ++L A C N LA
Sbjct: 343 FGLFSEMPCR-DVVSWNSMLACYAQCGKPNEALA 375
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 178/409 (43%), Gaps = 60/409 (14%)
Query: 10 LPIARKIHAQLISTCLISSIFL-----QLIDDDYRVFCDIGPR-YLFTYNTMINGGVRCL 63
LP H +L+S +++S+ L Q D + + P YL + + +R
Sbjct: 35 LPRGGHRHPRLVSALILASLRLVPHPQQTSDHAAALLRRVHPSVYLRAAARLPSHLLRRS 94
Query: 64 CVGNIKMALHLHGLV-KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
+G LH L+ + + SD ++ S + ++ C V A S F M + W
Sbjct: 95 LLGP-----QLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWN 149
Query: 123 FGIIRLLI---------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
I + +F MPER++VSW T+I + E + F + G
Sbjct: 150 VMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEP 209
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ + SA + ++ G +H VV ++ + + +IDMY+KCGC IE +++
Sbjct: 210 DGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGC--IEKAVE 267
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------- 285
+ FE M +++++W LI+ F+ G+ L+ F
Sbjct: 268 V--------------------FEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMEREN 307
Query: 286 -----FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEA 336
F+++LS CSH G G+ YF M ++ CMVDLLG +G L EA
Sbjct: 308 MAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEA 367
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ L+ +MP K IWGALL A +H + L E + +L++L+ G+
Sbjct: 368 QDLVKDMPLKANAAIWGALLAASRTHGDADLGEEALVHLIELEPSNSGN 416
>gi|302793933|ref|XP_002978731.1| hypothetical protein SELMODRAFT_109195 [Selaginella moellendorffii]
gi|300153540|gb|EFJ20178.1| hypothetical protein SELMODRAFT_109195 [Selaginella moellendorffii]
Length = 348
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 148/334 (44%), Gaps = 61/334 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+++ LH + + F S ++ + +++H K G+++ AE
Sbjct: 40 CSGLGDLRQGKGLHARILELGFDSHITVKNTLLNLHGKLGSLEDAEK------------- 86
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F E+++ SWN MI+ TRHG G + T + G + +
Sbjct: 87 ---------VFHSREEKNVASWNAMIAAYTRHGHGSKAAQTLELMDFEGTKPDEVTLSGI 137
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
F A + DL G LH R+ E DV V + LI+MY +C
Sbjct: 138 FDACGDMGDLASGRKLHIRIRGGELEQDVTVANSLINMYSRCW----------------- 180
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFF 288
S +A+L F M++R++ISW LI+A + G E F F F
Sbjct: 181 -----SVVEAELVFHRMTKRDLISWNSLIAANAMHGHPAEALDLFRELSLEGFAADNFTF 235
Query: 289 VSLLSGCSHSGPVTKGKHYFTAM----AKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
S L CSH G + + F +M ++ C++DLLG G LGEA++LI +MP
Sbjct: 236 TSTLFACSHGGFLKESLEVFASMVGDYQAVPSPQHYGCVLDLLGRMGKLGEAEELIGDMP 295
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+P V W +LLGAC +H + A + +L++L
Sbjct: 296 LEPDSVAWMSLLGACSTHSDATKASGLADSLVEL 329
>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 790
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 160/359 (44%), Gaps = 60/359 (16%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLV---KKFYFVSDESIAKSSIDMHVKCGAVDYA 106
FTY ++I C G +++ +H V + F F D S+ + ++ KCG D A
Sbjct: 287 FTYPSVIRA---CATAGLLQLGKQVHAYVLRREDFSFHFDNSL----VSLYYKCGKFDEA 339
Query: 107 ESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
+ F +M L W I ++F++M E++++SW MIS L +GFG
Sbjct: 340 RAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGE 399
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E L F + GF ++ A + A + G H++++ +
Sbjct: 400 EGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKI------------- 446
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
G +SS+ G AL+TMYA+ G ++A F M + +SW LI+A Q G
Sbjct: 447 ---------GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHG 497
Query: 278 -------VLE-------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCY 319
V E +P +++L+ CSH+G V +G+ YF +M +
Sbjct: 498 HGAEAVDVYEEMLKKGIRPDRITL-LTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADH 556
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ ++DLL SG +A+ +I+ +P KPT IW ALL C H N +L + L L
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGL 615
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 111/267 (41%), Gaps = 27/267 (10%)
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
LV++N MIS GF E L + + G L Y + A A+ L+ G +H+
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIG-----KALVTMYAEGGSTQK 250
V+ E + L+ +Y KCG I + AL++ Y G +
Sbjct: 311 YVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE 369
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSH 297
A L F+ M +N++SWM++IS ++ G E+ + F + F + C+
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAV 429
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G G+ Y + K + ++ + G++ EA+++ MP + V W A
Sbjct: 430 LGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDS-VSWNA 488
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVK 381
L+ A H + A V +L+ ++
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIR 515
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 144/356 (40%), Gaps = 44/356 (12%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP---------S 117
++++A +HG + F F I ID++ K ++YA F + P S
Sbjct: 29 SLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88
Query: 118 LFCWKFGIIRLLIMFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
+C I +F+K P RD V +N MI+ + + G+ + F ++ + GF +
Sbjct: 89 GYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDN 148
Query: 176 MLYATAFSARASVYDLEWG-PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------- 227
+A+ + A V D E H+ + V + L+ +Y KC +
Sbjct: 149 FTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSAR 208
Query: 228 ------IESSIQIGKALVTMYAEGGSTQKADLAFELMSRR-NMISWMVLISAFSQAG--- 277
+E + ++T Y + G + E M ++++ +IS + G
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268
Query: 278 -VLEKPRFF---------FFFVSLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCMV 324
LE R F + S++ C+ +G + GK Y F++ + +V
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFH-FDNSLV 327
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
L G EA+ + ++MP+K V W ALL S + A+L+ + + + ++
Sbjct: 328 SLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 151/344 (43%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V + + +H V + + + ++ + CG +D A F M + W
Sbjct: 246 CSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISW 305
Query: 122 --------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+ G ++L F +MP RD +SW MI R G E+L F E+ + G
Sbjct: 306 TSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI 365
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ +A A + LE G + + + N I++ +
Sbjct: 366 PDEFTMVSVLTACAHLGSLEIGEWIKTYIDK----------------------NKIKNDV 403
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----- 287
+G AL+ MY + G ++KA F M +R+ +W ++ + G ++ FF
Sbjct: 404 VVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDM 463
Query: 288 --------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
++ +LS C+HSG V + + +F M ++ CMVD+LG +GL+ E
Sbjct: 464 SIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKE 523
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A +++ +MP P ++WGALLGA H + +AEL + +L+L+
Sbjct: 524 AYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELE 567
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 127/312 (40%), Gaps = 56/312 (17%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH V KF S+ + + + M+ CG +D A F R
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRC------------------- 197
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+ D+ SWN MIS R E++ +E+ + +S+ SA + V D +
Sbjct: 198 ---KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDL 254
Query: 194 GPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL-----------VT 240
+H V EPSL + + L++ Y CG ++ +++I +++ V
Sbjct: 255 CKRVHEYVSECKTEPSLR--LENALVNAYAACG--EMDIAVRIFRSMKARDVISWTSIVK 310
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------------FF 287
Y E G+ + A F+ M R+ ISW ++I + +AG E F F
Sbjct: 311 GYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFT 370
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMP 344
VS+L+ C+H G + G+ T + K V ++D+ G +A+K+ +M
Sbjct: 371 MVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD 430
Query: 345 SKPTCVIWGALL 356
+ W A++
Sbjct: 431 QRDK-FTWTAMV 441
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA-RASVY 189
+F K+PE D+V WN MI ++ E + ++ + G S + + +
Sbjct: 90 LFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGG 149
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G LH VV G+ S++ + ALV MY+ G
Sbjct: 150 ALACGKKLHCHVVKF----------------------GLGSNLYVQNALVKMYSLCGLMD 187
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
A F+ + ++ SW ++IS +++ E+
Sbjct: 188 MARGVFDRRCKEDVFSWNLMISGYNRMKEYEE 219
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 157/366 (42%), Gaps = 55/366 (15%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA----KSSIDMHVKCGAVDY 105
FT+ ++I+ C G ++ +H K +A + I + KCG VD
Sbjct: 290 FTFTSVIS---VCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDI 346
Query: 106 AESAFLRMLNPSLFCWKF---GIIRLLIM------FQKMPERDLVSWNTMISILTRHGFG 156
A+ F +M L W G + + M F +MPE++++SW MIS L + GF
Sbjct: 347 AQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFA 406
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L F + GF +A A + + + L+ G LH++VV
Sbjct: 407 EEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRY------------ 454
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
G ESS+ G AL+TMYA G A F M + ISW +I+A Q
Sbjct: 455 ----------GYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQH 504
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
G + F F++++S CSH+G V +G+ YF +M +
Sbjct: 505 GQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEH 564
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ ++DLL +G EAK++++ MP +P IW ALL C H N L L +L
Sbjct: 565 YARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELK 624
Query: 380 VKVFGS 385
+ G+
Sbjct: 625 PQHDGT 630
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 102/292 (34%), Gaps = 61/292 (20%)
Query: 131 MFQKMPERDL-------------------------------VSWNTMISILTRHGFGFET 159
+F +MP RD V+WN MIS G E
Sbjct: 214 LFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEA 273
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS----RVVHMEPSLDVFVGSG 215
F ++ L + + S A+ G +H+ V + P + + V +
Sbjct: 274 FEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNA 333
Query: 216 LIDMYLKCGCNGI---------ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
LI Y KCG I E + +++ Y +A F M +N++SW
Sbjct: 334 LITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSW 393
Query: 267 MVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAK 313
+++IS +Q G E+ +FF + F + CS G + G+ + +
Sbjct: 394 IIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVR 453
Query: 314 FTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ Y ++ + G++ A L MP + W A++ A H
Sbjct: 454 YGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-VDAISWNAMIAALGQH 504
>gi|224121748|ref|XP_002330643.1| predicted protein [Populus trichocarpa]
gi|222872247|gb|EEF09378.1| predicted protein [Populus trichocarpa]
Length = 777
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 145/334 (43%), Gaps = 70/334 (20%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
K++ +H L+ K+ D +I + + + K G ++ E F RM
Sbjct: 476 KLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRM--------------- 520
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-W---NHGFGLSSMLYATAFSA 184
RD VSWN+MIS + + LC ++L W G L +AT SA
Sbjct: 521 ------SERRDEVSWNSMISGYIHN----DLLCKAMDLVWLMMQRGQRLDCFTFATVLSA 570
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A+V LE G +H+ + C +ES + IG ALV MY++
Sbjct: 571 CATVATLERGMEVHACAIR--------------------AC--LESDVVIGSALVDMYSK 608
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSL 291
G A F LM RN+ SW +IS +++ G + R F FV +
Sbjct: 609 CGRIDYASRFFNLMPMRNLYSWNSMISGYARHGYGDNALRLFTRMKLSGQLPDHITFVGV 668
Query: 292 LSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LS CSH G V +G YF +M + ++ CMVDLLG +G L + I++MP KP
Sbjct: 669 LSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIDNFINKMPIKP 728
Query: 348 TCVIWGALLGACC--SHYNTKLAELVMRNLLQLD 379
+IW +LGACC + T+L L +D
Sbjct: 729 NILIWRTVLGACCRGNGRKTELGRRAAEMLFNMD 762
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 44/191 (23%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
++ I+M+ KCG +D+A S F M+ ++D VSWN+MI
Sbjct: 292 AVGNGLINMYAKCGDIDHARSVFGLMV----------------------DKDSVSWNSMI 329
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ L ++ + + ++ + G S+ +A S+ AS+ + G H + +
Sbjct: 330 TGLDQNKCFEDAVKSYNSMRKTGLMPSNFTLISALSSCASLGCILLGQQTHGEGIKL--- 386
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
G++ + + L+ +YAE G + F M R+ +SW
Sbjct: 387 -------------------GLDMDVSVSNTLLALYAETGHLAECQKVFSWMLERDQVSWN 427
Query: 268 VLISAFSQAGV 278
+I A + +G
Sbjct: 428 TVIGALADSGA 438
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 121/327 (37%), Gaps = 63/327 (19%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
T+I+ C +G I + HG K D S++ + + + YAE+ L
Sbjct: 359 TLISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLAL--------YAETGHLAE 410
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF-ETLCTFIELWNHGFG 172
C K +F M ERD VSWNT+I L G E + F+E+ G+
Sbjct: 411 ------CQK--------VFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWS 456
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + + + +S+ + +H+ ++ D N IE+
Sbjct: 457 PNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDD----------------NAIEN-- 498
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMS-RRNMISWMVLISAFSQAGVLEKPRFF------ 285
AL+ Y + G + + F MS RR+ +SW +IS + +L K
Sbjct: 499 ----ALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNDLLCKAMDLVWLMMQ 554
Query: 286 -------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGE 335
F F ++LS C+ + +G + V +VD+ G +
Sbjct: 555 RGQRLDCFTFATVLSACATVATLERGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDY 614
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSH 362
A + + MP + W +++ H
Sbjct: 615 ASRFFNLMPMR-NLYSWNSMISGYARH 640
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 92/244 (37%), Gaps = 35/244 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++M R+ VS N ++ L R G E + F E H ++ Y SA A
Sbjct: 208 IFEQMTARNAVSMNGLMVGLVRQKCGEEAVEVFKET-RHLVDINVDSYVILLSACAEFAL 266
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G R VH ++ G N ++ + +G L+ MYA+ G
Sbjct: 267 LDEGRR-KGREVH--------------GYAIRTGLN--DAKVAVGNGLINMYAKCGDIDH 309
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-------------RFFFFFVSLLSGCSH 297
A F LM ++ +SW +I+ Q E F +S LS C+
Sbjct: 310 ARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFTLISALSSCAS 369
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGA 354
G + G+ K LL L +G L E +K+ M + V W
Sbjct: 370 LGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETGHLAECQKVFSWMLERDQ-VSWNT 428
Query: 355 LLGA 358
++GA
Sbjct: 429 VIGA 432
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 103/255 (40%), Gaps = 57/255 (22%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVK-CGAVDYAESAFLRMLNPSLFCWKFGII 126
+++ + +HGL+ K + +D S+ I M+ K G +DYA S
Sbjct: 59 LQLGMQIHGLILKSPYANDASLCNVLISMYGKYLGYIDYARS------------------ 100
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFG---FETLCTFIELWNHGFGLSSMLYATAFS 183
+F ++ R+ + WN+++S+ ++ G FE L + +++ + G L Y
Sbjct: 101 ----VFDEIEIRNSIYWNSIVSVYSQRGDAASCFE-LFSSMQMADSGLSLKPNEYTFGSL 155
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A+ ++ G L ++ L SGL+ +++ +G AL ++
Sbjct: 156 ITAACSSVDSGLSLLGQI------LARIKKSGLL------------ANLYVGSALAGGFS 197
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVSL 291
GS A FE M+ RN +S L+ + E+ F +V L
Sbjct: 198 RLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEVFKETRHLVDINVDSYVIL 257
Query: 292 LSGCSHSGPVTKGKH 306
LS C+ + +G+
Sbjct: 258 LSACAEFALLDEGRR 272
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 23/145 (15%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASVYDLE 192
MP+R+ V+W +IS T++G + E+ GF + + +A A + + L+
Sbjct: 1 MPDRNGVTWACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLCGLQ 60
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H ++ + D + + LI MY GK L G A
Sbjct: 61 LGMQIHGLILKSPYANDASLCNVLISMY--------------GKYL-------GYIDYAR 99
Query: 253 LAFELMSRRNMISWMVLISAFSQAG 277
F+ + RN I W ++S +SQ G
Sbjct: 100 SVFDEIEIRNSIYWNSIVSVYSQRG 124
>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
Length = 781
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 146/334 (43%), Gaps = 70/334 (20%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
K++ +H L+ K+ D +I + + + K G ++ E F RM
Sbjct: 323 KLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRM--------------- 367
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-W---NHGFGLSSMLYATAFSA 184
RD VSWN+MIS + E LC ++L W G L +AT SA
Sbjct: 368 ------SERRDEVSWNSMISGYIHN----ELLCKAMDLVWLMMQRGQRLDCFTFATVLSA 417
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A+V LE G +H+ + C +ES + IG ALV MY++
Sbjct: 418 CATVATLECGMEVHACAIR--------------------AC--LESDVVIGSALVDMYSK 455
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSL 291
G A F LM RN+ SW +IS +++ G + R F FV +
Sbjct: 456 CGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGV 515
Query: 292 LSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LS CSH G V +G YF +M + ++ CMVDLLG +G L + + I++MP KP
Sbjct: 516 LSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKP 575
Query: 348 TCVIWGALLGACC--SHYNTKLAELVMRNLLQLD 379
+IW +LGACC + T+L L +D
Sbjct: 576 NILIWRTVLGACCRGNGRKTELGRRAAEMLFNMD 609
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 37/244 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP+R+ V+W +IS T++G + E+ GF + + +A RA
Sbjct: 57 LFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAI--RACQES 114
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+ W R VH + +GL D + + +G L+ MYA+ G
Sbjct: 115 MLW--RRKGRQVH-----GYAIRTGLND-----------AKVAVGNGLINMYAKCGDIDH 156
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-------------RFFFFFVSLLSGCSH 297
A F LM ++ +SW +I+ Q E F +S LS C+
Sbjct: 157 ARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCAS 216
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWGA 354
G + G+ K LL L + L E +K+ M + V W
Sbjct: 217 LGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQ-VSWNT 275
Query: 355 LLGA 358
++GA
Sbjct: 276 VIGA 279
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 44/209 (21%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
++ I+M+ KCG +D+A S F G+ M ++D VSWN+MI
Sbjct: 139 AVGNGLINMYAKCGDIDHARSVF-------------GL---------MVDKDSVSWNSMI 176
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ L ++ + + ++ + G S+ +A S+ AS+ + G H + +
Sbjct: 177 TGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKL--- 233
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
G++ + + L+ +YAE + F M R+ +SW
Sbjct: 234 -------------------GLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWN 274
Query: 268 VLISAFSQAGVLEKPRFFFFFVSLLSGCS 296
+I A + +G F + +G S
Sbjct: 275 TVIGALADSGASVSEAIEVFLEMMRAGWS 303
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 94/250 (37%), Gaps = 41/250 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGF-ETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
+F M ERD VSWNT+I L G E + F+E+ G+ + + + + +S+
Sbjct: 261 VFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLS 320
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ +H+ ++ D N IE+ AL+ Y + G +
Sbjct: 321 TSKLSHQIHALILKYNVKDD----------------NAIEN------ALLACYGKSGEME 358
Query: 250 KADLAFELMS-RRNMISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLSGC 295
+ F MS RR+ +SW +IS + +L K F F ++LS C
Sbjct: 359 NCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSAC 418
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
+ + G + V +VD+ G + A + + MP + W
Sbjct: 419 ATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVR-NLYSW 477
Query: 353 GALLGACCSH 362
+++ H
Sbjct: 478 NSMISGYARH 487
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 175/396 (44%), Gaps = 55/396 (13%)
Query: 20 LISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVK 79
+IS + S + ++ + R+ + P FT+ ++++ C G +HG +
Sbjct: 265 MISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSA---CANAGFFAHGKSVHGQIT 321
Query: 80 KFY--FVSDESIAKSS--IDMHVKCGAVDYAESAFLRMLNPSLFCWKF---GII------ 126
+ FV + ++ ++ + ++ KCG + A F M + + W G +
Sbjct: 322 RLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLD 381
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
+ + +F++MP ++ +SW M+S GF + L F + YA A SA
Sbjct: 382 KAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACG 441
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
+ L+ G LH +V + G E S G AL+TMYA G
Sbjct: 442 ELGSLKHGKQLHGHLVQL----------------------GFEGSNSAGNALITMYARCG 479
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLS 293
+ ++A+L F +M + +SW +ISA Q G + F F+++L+
Sbjct: 480 AVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539
Query: 294 GCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
C+HSG V +G YF +M + ++ ++DLLG +G +GEA+ LI MP +PT
Sbjct: 540 ACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTP 599
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
IW A+L C + + +L L ++ + G+
Sbjct: 600 SIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGT 635
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 123/322 (38%), Gaps = 42/322 (13%)
Query: 88 SIAKSSIDMHVKCGAVDYAESA---FLRMLNPSLFCWK---FGIIR------LLIMFQKM 135
S++ + + +++KC A++ A M + W G +R +F+++
Sbjct: 195 SVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEV 254
Query: 136 PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
+ V WN MIS G E F + L + + SA A+ G
Sbjct: 255 DVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGK 314
Query: 196 HLHSRVVHMEPSL----DVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMY 242
+H ++ ++P+ + V + L+ +Y KCG N + +++ Y
Sbjct: 315 SVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGY 374
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFV 289
E KA FE M +N +SWMV++S + G E + F + +
Sbjct: 375 VESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYA 434
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+S C G + GK + + + ++ + G + EA + MP+
Sbjct: 435 GAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNI 494
Query: 347 PTCVIWGALLGACCSHYNTKLA 368
+ V W A++ A H + + A
Sbjct: 495 DS-VSWNAMISALGQHGHGREA 515
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 144/336 (42%), Gaps = 50/336 (14%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G++ + +H + K S+ S+ S IDM+ KCG ++ AE R F + +
Sbjct: 496 GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR------FFQRANV 549
Query: 126 IRLLIMFQKMPERDL----VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ +KM + L VSWN++IS + F + G YAT
Sbjct: 550 SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATV 609
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A++ G +H++V+ E DV++ S L+DMY KC
Sbjct: 610 LDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKC------------------ 651
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G + L FE RR+ ++W +I ++ G E+ F F
Sbjct: 652 ----GDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 707
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+S+L C+H G + KG YF M + ++ MVD+LG SG + A +LI EMP
Sbjct: 708 ISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 767
Query: 345 SKPTCVIWGALLGACCSHYNT-KLAELVMRNLLQLD 379
+ VIW LLG C H N ++AE LL+LD
Sbjct: 768 FEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLD 803
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 138/346 (39%), Gaps = 69/346 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + + +HG+V + +D A + +DM+ K + ES
Sbjct: 190 CSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAK--GKRFVES------------- 234
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +FQ +PE++ VSW+ +I+ ++ L F E+ G+S +YA+
Sbjct: 235 -------LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASV 287
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ A++ +L G LH+ + + + D V + +DMY KC
Sbjct: 288 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKC------------------ 329
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLL 292
+ Q A + F+ N S+ +I+ +SQ K F F L
Sbjct: 330 ----DNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 385
Query: 293 SG----CSHSGPVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
SG C+ +++G + K + + C +D+ G L EA ++ DEM
Sbjct: 386 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 445
Query: 346 KPTCVIWGALLGACCSHYNTKLAELV------MRNLLQLDVKVFGS 385
+ V W A++ A N K E + +R+ ++ D FGS
Sbjct: 446 RDA-VSWNAIIAA--HEQNGKGYETLFLFVSMLRSRIEPDEFTFGS 488
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F MP RD+VSWN+M+S ++G +++ F+++ G +A + + D
Sbjct: 137 FNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDT 196
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
G +H VV + DV S L+DMY K GK V ++
Sbjct: 197 SLGMQIHGIVVRVGCDTDVVAASALLDMYAK------------GKRFV----------ES 234
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFFFFFVSLLSGCSHS 298
F+ + +N +SW +I+ Q +L +FF + +G S S
Sbjct: 235 LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQS 282
>gi|297605857|ref|NP_001057684.2| Os06g0493800 [Oryza sativa Japonica Group]
gi|255677066|dbj|BAF19598.2| Os06g0493800 [Oryza sativa Japonica Group]
Length = 721
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 142/335 (42%), Gaps = 63/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +++ +H K +F D + + + ++ KCG + +E
Sbjct: 319 CSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSE-------------- 364
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
I+F + +D +SW +++ ++ E L F E+ G S +
Sbjct: 365 --------IVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSV 416
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A ++ L G +HSRVV + G++ + ALVTM
Sbjct: 417 LRACSATSSLSCGWQIHSRVVKL----------------------GVDDDTSVENALVTM 454
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFF 288
YA+ G Q A F M R +ISW LI++FSQ G + + F + F
Sbjct: 455 YAKCGVVQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTF 514
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
V LLS CS G V +G YF M K Y ++ CMVDL +G +A K ID M
Sbjct: 515 VGLLSSCSRMGLVAEGCEYFKQM-KTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAM 573
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P +P ++W ALL +C H N L + + +L++
Sbjct: 574 PCQPDQLVWEALLASCRVHGNLDLGRMAAKKILEI 608
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 125/325 (38%), Gaps = 66/325 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT ++ G C + +H K DES+A + +DM+ KCG V + A
Sbjct: 106 FTVAALVAG---CARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRA 162
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIELWN 168
F+ P+R ++SW +MI+ L HG G+ T I L+
Sbjct: 163 FVL----------------------TPQRSVLSWTSMIACLVNHGDSGYRD--TAIVLFK 198
Query: 169 HGFGLSSMLYATAFSARASVYD----LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
L FS V+D L G +H +V M +D +G+ L+ MY +CG
Sbjct: 199 KMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCG 258
Query: 225 CNGIESSIQIG----------KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
G++ ++ +L+T YA G +A F M +M
Sbjct: 259 --GMDEITRLACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHM--------PID 308
Query: 275 QAGVLEKPRFFFFFVSLLSGCSHSGP--VTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSG 331
Q+ + SLL CS G V K H + F T +V + G G
Sbjct: 309 QSAI----------TSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCG 358
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALL 356
+ ++ + + + +K T + W ALL
Sbjct: 359 DIASSEIVFNTLENKDT-ISWTALL 382
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 24/149 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG--LSSMLYATAFSARASV 188
+F +MP R++VSW+ +I+ +R G + L F + G +S A + A
Sbjct: 59 VFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARA 118
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
D G +H+ V + D V L+DMY KCG GS+
Sbjct: 119 KDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCG-------------------RVGSS 159
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG 277
+ AF L +R+++SW +I+ G
Sbjct: 160 WR---AFVLTPQRSVLSWTSMIACLVNHG 185
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 36/188 (19%)
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
H H R VH G+ + K GC +S + L+ Y G A F
Sbjct: 18 HSHPRAVH---------GAAV-----KLGC---LASTYLCNNLLLSYQARGHLADARGVF 60
Query: 256 ELMSRRNMISWMVLISAFSQAGVL--------------EKPRFFFFFV-SLLSGCSHSGP 300
+ M RRN++SW VLI+A S+ GVL E+ R F V +L++GC+ +
Sbjct: 61 DEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKD 120
Query: 301 VTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
G+ + K +VD+ G +G + + P + + + W +++
Sbjct: 121 AVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQR-SVLSWTSMIA 179
Query: 358 ACCSHYNT 365
+H ++
Sbjct: 180 CLVNHGDS 187
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 151/344 (43%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V + + +H V + + + ++ + CG +D A F M + W
Sbjct: 246 CSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISW 305
Query: 122 --------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+ G ++L F +MP RD +SW MI R G E+L F E+ + G
Sbjct: 306 TSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI 365
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ +A A + LE G + + + N I++ +
Sbjct: 366 PDEFTMVSVLTACAHLGSLEIGEWIKTYIDK----------------------NKIKNDV 403
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----- 287
+G AL+ MY + G ++KA F M +R+ +W ++ + G ++ FF
Sbjct: 404 VVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDM 463
Query: 288 --------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
++ +LS C+HSG V + + +F M ++ CMVD+LG +GL+ E
Sbjct: 464 SIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKE 523
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A +++ +MP P ++WGALLGA H + +AEL + +L+L+
Sbjct: 524 AYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELE 567
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 127/312 (40%), Gaps = 56/312 (17%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH V KF S+ + + + M+ CG +D A F R
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRC------------------- 197
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+ D+ SWN MIS R E++ +E+ + +S+ SA + V D +
Sbjct: 198 ---KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDL 254
Query: 194 GPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL-----------VT 240
+H V EPSL + + L++ Y CG ++ +++I +++ V
Sbjct: 255 CKRVHEYVSECKTEPSLR--LENALVNAYAACG--EMDIAVRIFRSMKARDVISWTSIVK 310
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------------FF 287
Y E G+ + A F+ M R+ ISW ++I + +AG E F F
Sbjct: 311 GYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFT 370
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMP 344
VS+L+ C+H G + G+ T + K V ++D+ G +A+K+ +M
Sbjct: 371 MVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD 430
Query: 345 SKPTCVIWGALL 356
+ W A++
Sbjct: 431 QRDK-FTWTAMV 441
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA-RASVY 189
+F K+PE D+V WN MI ++ E + ++ + G S + + +
Sbjct: 90 LFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGG 149
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G LH VV G+ S++ + ALV MY+ G
Sbjct: 150 ALACGKKLHCHVVKF----------------------GLGSNLYVQNALVKMYSLCGLMD 187
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
A F+ + ++ SW ++IS +++ E+
Sbjct: 188 MARGVFDRRCKEDVFSWNLMISGYNRMKEYEE 219
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 184/447 (41%), Gaps = 92/447 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC + SL +++HA + T L S +++ + D R+F + R L
Sbjct: 81 LKACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDL 140
Query: 50 FTYNTMIN---------------------GGVR---------CLCVGNIKMALHLHGLVK 79
++NT++ GG C +G + +HG V
Sbjct: 141 ASWNTLLGAYNDNAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVI 200
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRML-------NPSLFCW--KFGIIRLLI 130
K S++ + + ++ KCG +D A+S F+ M + LF G I L
Sbjct: 201 KVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLAR 260
Query: 131 -MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
+F +M +DLVSWN+MI + + + F ++ N + +A AS+
Sbjct: 261 GIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLA 320
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
DL+ G H ++ P D+FVG+ LIDMY KCG + +A+VT Y
Sbjct: 321 DLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGS--------LEEAMVTFYK------ 366
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
M R++ +W I + G +K F FVS+L CS
Sbjct: 367 --------MDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVLMACS 418
Query: 297 HSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SG V +G F M + Y + C++D+L +GLL +A++ I MP K +
Sbjct: 419 RSGLVKEGCLLFKRMVE-AYQIQPKIEHLGCLLDILSRAGLLHQAEEFIKLMPPKEKIIA 477
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQL 378
LL AC +H L E + L +L
Sbjct: 478 NKTLLSACMNHLEYDLGEKIANGLTEL 504
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 125/339 (36%), Gaps = 54/339 (15%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
+TY M+ C +G++ +H V K SD + + + ++ G V A
Sbjct: 75 YTYPAMLKA---CWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARR- 130
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F MP RDL SWNT++ + E L F +
Sbjct: 131 ---------------------LFDGMPHRDLASWNTLLGAYNDNAV--EVLVLFKRMMYE 167
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G G + FSA + E+G +H V+ + + + + L+ +Y KCG
Sbjct: 168 GIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAA 227
Query: 230 SSIQIGKA----------LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
S+ + A L Y + GS A F+ MS ++++SW +I A+ +A
Sbjct: 228 QSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHP 287
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCM 323
+K F VS+L+ C+ + G+ H F + +
Sbjct: 288 KKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTAL 347
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+D+ G L EA +M S+ W + +H
Sbjct: 348 IDMYAKCGSLEEAMVTFYKMDSR-DVFTWTTAIEGLANH 385
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 175/383 (45%), Gaps = 55/383 (14%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
I++ ++F +I + + ++N MI+G GN K AL L + K DES +
Sbjct: 173 IENAQKMFDEIPVKDVVSWNAMISGYAE---TGNYKEALELFKDMMKTNVRPDESTMVTV 229
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI--------------MFQKMPERD 139
+ + G+++ ++ F I+ LI +F+ +P +D
Sbjct: 230 VSACAQSGSIELGRQVH-SWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKD 288
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
++SWNT+I T E L F E+ G + + + A A + ++ G
Sbjct: 289 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG----- 343
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
R +H+ ID LK G+ ++ + +L+ MYA+ G + A F +
Sbjct: 344 RWIHV-----------YIDKRLK----GVANASSLRTSLIDMYAKCGDIEAAHQVFNSIL 388
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
+++ SW +I F+ G + F FV LLS CSHSG + G+H
Sbjct: 389 HKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRH 448
Query: 307 YFTAMAK-FTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
F +M + + T ++ CM+DLLG SGL EA+++I+ M +P VIW +LL AC H
Sbjct: 449 IFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMH 508
Query: 363 YNTKLAELVMRNLLQLDVKVFGS 385
N +L E +NL++++ + GS
Sbjct: 509 GNVELGESFAQNLIKIEPENPGS 531
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 44/259 (16%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW------- 121
K +HG V K D + S I M+V+ G ++ A F + + +
Sbjct: 108 KEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGY 167
Query: 122 --KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
+ I MF ++P +D+VSWN MIS G E L F ++
Sbjct: 168 ASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 227
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
T SA A +E G +HS ID + G S+++I AL+
Sbjct: 228 TVVSACAQSGSIELGRQVHS----------------WIDDH------GFGSNLKIVNALI 265
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------- 286
+Y++ G + A FE + +++ISW LI ++ + ++ F
Sbjct: 266 DLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 325
Query: 287 FFVSLLSGCSHSGPVTKGK 305
+S+L C+H G + G+
Sbjct: 326 TMLSILPACAHLGAIDIGR 344
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 131/270 (48%), Gaps = 42/270 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F KMP+RDL+SW MI+ + GF E L F E+ G + +A +A ++
Sbjct: 147 VFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAACTNLGA 206
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +G +H V+ + +V V + LID+Y +CGC +E + Q+
Sbjct: 207 LSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGC--VEFARQV---------------- 248
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
F+ M +R ++SW +I F+ G + +F F L+ CSH
Sbjct: 249 ----FDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSH 304
Query: 298 SGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
G V +G YF M K Y ++ C+VDL +G L +A +++ MP KP V+
Sbjct: 305 VGLVEEGFQYFQ-MMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVI 363
Query: 353 GALLGACCSHYN-TKLAELVMRNLLQLDVK 381
G+LL AC +H N T LAE +M+ + LDVK
Sbjct: 364 GSLLAACRNHGNHTILAERLMKYITDLDVK 393
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
Y +I+ C +G + L +H V F ++ ++ S ID++ +CG V++A
Sbjct: 191 YVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQ--- 247
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+F KM +R +VSWN++I +G E+L F ++ GF
Sbjct: 248 -------------------VFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGF 288
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVH---MEPSLDVFVGSGLIDMYLKCG 224
+ + A +A + V +E G + H + P ++ + L+D+Y + G
Sbjct: 289 TPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHY--GCLVDLYSRAG 342
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSW + I++L+R G E + F ++ G + + + SA +
Sbjct: 21 IVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNF----------- 69
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
PS +G L K G S + +G A++ MY++ G +KA L F+ +
Sbjct: 70 ------PSGSEGLGYLLHGYACKLGLE--RSHVMVGTAILGMYSKSGHLRKARLVFDYIE 121
Query: 260 RRNMISWMVLISAFSQAGVLEK 281
+N ++W +I + + G ++
Sbjct: 122 DKNSVTWNTMIDGYMRNGQVDN 143
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 153/342 (44%), Gaps = 62/342 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + K +H V K F SD + + DM+ K G ++ A + F
Sbjct: 217 CGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF----------- 265
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
GI R++VS+ +I + L F+EL G + +++
Sbjct: 266 --GIDSEC--------RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSL 315
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A A+ LE G LH++V+ + D FV S L+DMY KCG +E +IQ
Sbjct: 316 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGL--LEQAIQ-------- 365
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
AF+ + I+W L+S F Q G+ + F F
Sbjct: 366 ------------AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF 413
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
+SLL+GCSH+G V +G YF +M K TY ++ C++DLLG +G L EAK+ I+ M
Sbjct: 414 ISLLTGCSHAGLVEEGLDYFYSMDK-TYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 472
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
P +P W + LGAC H + ++ +L L++L+ K G+
Sbjct: 473 PFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 514
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 143/349 (40%), Gaps = 65/349 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
F +++ I C +G+I+M +H L KF S+ + + DM+ KCGA+
Sbjct: 107 FAFSSAIRA---CASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAM------ 157
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
F ++ F++MP +D VSW MI ++ G E L F ++ +
Sbjct: 158 -------------FDACKV---FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDE 201
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + + A ++ ++G +HS VV + D+FVG+ L DMY K
Sbjct: 202 EVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSK------- 254
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSR-RNMISWMVLISAFSQAGVLEKPRFFFF- 287
G + A F + S RN++S+ LI + + +EK F
Sbjct: 255 ---------------AGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVE 299
Query: 288 ------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVC--MVDLLGLSGL 332
F SL+ C++ + +G + K + FV +VD+ G GL
Sbjct: 300 LRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGL 359
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
L +A + DE+ PT + W +L+ H K A + ++ VK
Sbjct: 360 LEQAIQAFDEI-GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVK 407
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 44/193 (22%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
++M+ KCG +D+A L +F MP+R+LVSW MIS L+++
Sbjct: 47 VNMYSKCGELDHA----------------------LKLFDTMPQRNLVSWTAMISGLSQN 84
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
E + TF + G + +++A A AS+ +E G +H + ++FVG
Sbjct: 85 SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
S L DMY KCG M+ A FE M ++ +SW +I +
Sbjct: 145 SNLEDMYSKCG---------------AMF-------DACKVFEEMPCKDEVSWTAMIDGY 182
Query: 274 SQAGVLEKPRFFF 286
S+ G E+ F
Sbjct: 183 SKIGEFEEALLAF 195
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 66/220 (30%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFL-QLIDDDYRVFCDIGP-----------RYLF 50
ACG+LK+ R +H+ ++ S IF+ + D Y D+ R +
Sbjct: 216 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 275
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
+Y +I+G V C ++ LH V
Sbjct: 276 SYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 335
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
K F D ++ +DM+ KCG ++ A AF + +P+
Sbjct: 336 MKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPT--------------------- 374
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
++WN+++S+ +HG G + + F + + G +++ +
Sbjct: 375 -EIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF 413
>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g26782, mitochondrial-like [Glycine max]
Length = 555
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 133/276 (48%), Gaps = 46/276 (16%)
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG-FGLSSMLYAT 180
KFG + + +F M E D WN++I+ ++G E F ++ G F ++++
Sbjct: 135 KFGEMGVAKVFDGMNESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDX 194
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
S L+ G +H +V+ M+ VFVG+ ++D+Y KC
Sbjct: 195 GLSGA-----LQLGKCIHHQVIKMDLEDSVFVGTSIVDIYCKCE---------------- 233
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
+ A AF+ M +N+ SW +++ + G ++ F+
Sbjct: 234 ------RVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKMIRSGVKPNYIT 287
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEM 343
FVS+L+ CSH+G + +G H+F M +F +++CMVDLLG +G L LI EM
Sbjct: 288 FVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYLCMVDLLGRAGYL-XCYGLIKEM 346
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+KP +IWG+LLGAC H N +L E+ R L +LD
Sbjct: 347 NAKPDFIIWGSLLGACRIHKNVELGEISARKLFELD 382
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 191/442 (43%), Gaps = 102/442 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--------LIDDDY---RVFCDIGPRYL 49
+K+C + R+ H+ + T L I++Q + D+ +VF D+ R +
Sbjct: 116 LKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDV 175
Query: 50 FTYNTMINGGVR-----------------------------CLCVGNIKMALHLHGLVKK 80
++ +I+G V+ C +G + + +HGLV K
Sbjct: 176 VSWTGLISGYVKTGLFNEAISLFLRMNVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFK 235
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
+ + + + +DM++KC +V A MF +MPE+D+
Sbjct: 236 CLYGEELVVCNAVLDMYMKCDSVTDARK----------------------MFDEMPEKDI 273
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
+SW +MI L + E+L F ++ GF ++ + SA AS+ L+ G +H
Sbjct: 274 ISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEY 333
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGC--------NGIES-SIQIGKALVTMYAEGGSTQKA 251
+ DV +G+ L+DMY KCGC NG+ S +I+ A + A G ++A
Sbjct: 334 IDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEA 393
Query: 252 DLAFELM----SRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHY 307
FE + +R N ++ F+++ + C H+G V +G+ Y
Sbjct: 394 LKQFEDLVESGTRPNEVT----------------------FLAVFTACCHNGLVDEGRKY 431
Query: 308 FTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
F M Y ++ CMVDLL +GL+GEA +LI MP P I GALL + ++
Sbjct: 432 FNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTY 491
Query: 363 YNTKLAELVMRNLLQLDVKVFG 384
N + ++++L ++ + G
Sbjct: 492 GNVGFTQEMLKSLPNVEFQDSG 513
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 151/340 (44%), Gaps = 64/340 (18%)
Query: 65 VGNIKMALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
+G I+ + G ++K +F+ D +I + + M+ K G VD A + +F W
Sbjct: 361 LGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARA---------VFNW-- 409
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM--LYATA 181
+P +D++SWNT+IS ++GF E + + + G +S+ + +
Sbjct: 410 -----------LPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSV 458
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A + L G LH R++ LDVFVG+ L DMY KCG ++ AL
Sbjct: 459 LPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCG--------RLDDALSLF 510
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
Y + R N + W LI+ G EK F F
Sbjct: 511 YQ--------------IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITF 556
Query: 289 VSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMP 344
V+LLS CSHSG V +G+ F M + T ++ CMVDL G +G L A I MP
Sbjct: 557 VTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMP 616
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+P IWGALL AC H N L ++ +L +++ + G
Sbjct: 617 LQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVG 656
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 48/208 (23%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
N+ +H L KF F+ D +A S I ++ + GAV +
Sbjct: 165 NVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAV----------------------V 202
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
I+F +MP RD+ SWN MIS + G E L L + + S+ + SA
Sbjct: 203 NARILFDEMPTRDMGSWNAMISGYCQSGNAKEALT----LSDGLRAMDSVTVVSLLSACT 258
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
D G +HS + +G+ES + + L+ +YAE G
Sbjct: 259 EAGDFNRGVTIHSYSIK----------------------HGLESELFVSNKLIDLYAEFG 296
Query: 247 STQKADLAFELMSRRNMISWMVLISAFS 274
S + F+ M R++ISW +I A+
Sbjct: 297 SLKDCQKVFDRMYVRDLISWNSIIKAYE 324
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 102/255 (40%), Gaps = 39/255 (15%)
Query: 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL-CTFIELWNHGFGLSS 175
+L+C+ + F + RD+ +WN MIS R G+ E + C + + + G
Sbjct: 94 NLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDY 153
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+ + A +V D G +H + DV+V + LI +Y + G
Sbjct: 154 RTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYG----------- 199
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF---------F 286
+ A + F+ M R+M SW +IS + Q+G ++
Sbjct: 200 -----------AVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSV 248
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-YFVC--MVDLLGLSGLLGEAKKLIDEM 343
VSLLS C+ +G +G + K FV ++DL G L + +K+ D M
Sbjct: 249 TVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRM 308
Query: 344 PSKPTCVIWGALLGA 358
+ + W +++ A
Sbjct: 309 YVR-DLISWNSIIKA 322
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 27/166 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G ++ + LHG + K D + S DM+ KCG +D A
Sbjct: 462 CSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDA--------------- 506
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F ++P + V WNT+I+ HG G + + F E+ + G + + T
Sbjct: 507 -------LSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 559
Query: 182 FSA---RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
SA V + EW + + PSL + ++D+Y + G
Sbjct: 560 LSACSHSGLVDEGEWCFEMMQTDYGITPSLKHY--GCMVDLYGRAG 603
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRF 284
N I++ + I LV +Y G+ A F+ + R++ +W ++IS + +AG E R
Sbjct: 81 NAIQN-VCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRC 139
Query: 285 FFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL-- 329
F F+ S+L C + VT G KF + L+ L
Sbjct: 140 FSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKFGFMWDVYVAASLIHLYC 196
Query: 330 -SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
G + A+ L DEMP++ W A++ C N K A + L +D
Sbjct: 197 RYGAVVNARILFDEMPTRDMGS-WNAMISGYCQSGNAKEALTLSDGLRAMD 246
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 144/336 (42%), Gaps = 50/336 (14%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G++ + +H + K S+ S+ S IDM+ KCG ++ AE R F + +
Sbjct: 454 GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR------FFQRANV 507
Query: 126 IRLLIMFQKMPERDL----VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ +KM + L VSWN++IS + F + G YAT
Sbjct: 508 SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATV 567
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A++ G +H++V+ E DV++ S L+DMY KC
Sbjct: 568 LDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKC------------------ 609
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G + L FE RR+ ++W +I ++ G E+ F F
Sbjct: 610 ----GDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 665
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+S+L C+H G + KG YF M + ++ MVD+LG SG + A +LI EMP
Sbjct: 666 ISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 725
Query: 345 SKPTCVIWGALLGACCSHYNT-KLAELVMRNLLQLD 379
+ VIW LLG C H N ++AE LL+LD
Sbjct: 726 FEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLD 761
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 138/346 (39%), Gaps = 69/346 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + + +HG+V + +D A + +DM+ K + ES
Sbjct: 148 CSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAK--GKRFVES------------- 192
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +FQ +PE++ VSW+ +I+ ++ L F E+ G+S +YA+
Sbjct: 193 -------LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASV 245
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ A++ +L G LH+ + + + D V + +DMY KC
Sbjct: 246 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKC------------------ 287
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLL 292
+ Q A + F+ N S+ +I+ +SQ K F F L
Sbjct: 288 ----DNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 343
Query: 293 SG----CSHSGPVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
SG C+ +++G + K + + C +D+ G L EA ++ DEM
Sbjct: 344 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 403
Query: 346 KPTCVIWGALLGACCSHYNTKLAELV------MRNLLQLDVKVFGS 385
+ V W A++ A N K E + +R+ ++ D FGS
Sbjct: 404 RDA-VSWNAIIAA--HEQNGKGYETLFLFVSMLRSRIEPDEFTFGS 446
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F MP RD+VSWN+M+S ++G +++ F+++ G +A + + D
Sbjct: 95 FNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDT 154
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
G +H VV + DV S L+DMY K GK V ++
Sbjct: 155 SLGMQIHGIVVRVGCDTDVVAASALLDMYAK------------GKRFV----------ES 192
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFFFFFVSLLSGCSHS 298
F+ + +N +SW +I+ Q +L +FF + +G S S
Sbjct: 193 LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQS 240
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 154/349 (44%), Gaps = 72/349 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T++ C +G +K +H V F + + S +DM+ KCG+V ++
Sbjct: 323 FTFGTVLTA---CGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQR- 378
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F +MP ++ VSW+ ++ ++G + I+++
Sbjct: 379 ---------------------IFDRMPIKNSVSWSALLGGYCQNG----DFKSVIQIFRK 413
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + T A + + G +H + + DV V S L+D+Y KCGC
Sbjct: 414 MEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGC---- 469
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------- 280
+ A F+ M RN+I+W +I F+Q G E
Sbjct: 470 ------------------IEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQM 511
Query: 281 -----KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLS 330
KP + F + +L CSH G V +G+ YF +M K Y ++ CMVDLLG +
Sbjct: 512 VKEGIKPDYISF-IGILFACSHRGLVDEGREYFISMTK-DYGIKVGIEHYSCMVDLLGRA 569
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
GLL EA+ LI+ + +W ALLGAC + N ++AE + + +++L+
Sbjct: 570 GLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELE 618
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 140/346 (40%), Gaps = 63/346 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT + +I C +G++K+ HG+V F S+ IA + IDMH + A+D A
Sbjct: 221 FTLSAVIKA---CSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQL 277
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-N 168
F +L P C W ++IS LTR+ F E L F + +
Sbjct: 278 FDELLEPDAIC----------------------WTSIISALTRNDFFDEALRFFYSMQRD 315
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
HG + T +A ++ L+ G +H++V+ +V V S L+DMY KCG G
Sbjct: 316 HGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGE 375
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----------V 278
I F+ M +N +SW L+ + Q G
Sbjct: 376 SQRI----------------------FDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRK 413
Query: 279 LEKPRFFFFFVSLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCMVDLLGLSGLLGE 335
+EK + F ++L C+ V +GK + + +VDL G +
Sbjct: 414 MEKVDLYCFG-TILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEY 472
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
A+ + D+MP + + W +++G + + A + +++ +K
Sbjct: 473 AQTIFDQMPVR-NLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIK 517
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 118/272 (43%), Gaps = 40/272 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + +D++SW +MIS R G +L F ++ +G ++ + A + + D
Sbjct: 176 VFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGD 235
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G H V+ G +S+ I AL+ M+ +
Sbjct: 236 LKLGRIFHGVVLG----------------------RGFDSNYVIASALIDMHGRNCALDD 273
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF-------------FFFVSLLSGCS 296
A F+ + + I W +ISA ++ ++ RFF F F ++L+ C
Sbjct: 274 ARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG 333
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ G + +GK + + V +VD+ G G +GE++++ D MP K + V W
Sbjct: 334 NLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNS-VSWS 392
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
ALLG C + + K + R + ++D+ FG+
Sbjct: 393 ALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGT 424
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+LYA+ V G +H+ V+ D FVG+ L+ +Y K G + E
Sbjct: 119 VLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPE------ 172
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF--------- 285
T+K F+ + +++ISW +IS + + G + F
Sbjct: 173 ------------TRK---VFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVE 217
Query: 286 ---FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKL 339
F +++ CS G + G+ + + + +V ++D+ G + L +A++L
Sbjct: 218 PNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQL 277
Query: 340 IDEMPSKPTCVIWGALLGA 358
DE+ +P + W +++ A
Sbjct: 278 FDEL-LEPDAICWTSIISA 295
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 156/335 (46%), Gaps = 38/335 (11%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI- 130
LHLH + F FV+D + + I M+VK G +D A F M + + W I+
Sbjct: 131 LHLHAFL--FGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARS 188
Query: 131 --------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
+F +P +D+V+W +M++ +++ + L F ++ G + A
Sbjct: 189 GDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAI 248
Query: 183 SARASV----YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
SA A + Y +W + + +VFVGS LIDMY KCG +E + + K +
Sbjct: 249 SACAQLGVSGY-ADWIREI-AESSRFGSGSNVFVGSALIDMYSKCG--NVEEAYNVFKGM 304
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298
M S+ A +R S + L + G+ KP FV L + CSH+
Sbjct: 305 KEMNVFSYSSMIVGFAVHGRAR----SAIKLFYEMLENGI--KPN-HVTFVGLFTACSHA 357
Query: 299 GPVTKGKHYFTAMAKFTYTCY--------FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
G V +G+ F AM + CY + CM DLLG +G L +A +L+ MP +P
Sbjct: 358 GMVEQGQQLFGAMKE----CYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGG 413
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+WGALLGA H N +AE+ R+L +L+ G+
Sbjct: 414 VWGALLGASHIHGNPDVAEIASRSLFELEPDNLGN 448
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 172/407 (42%), Gaps = 68/407 (16%)
Query: 14 RKIHAQLISTCL--ISSIFLQLIDD---------DYRVFCDIGPRYLFTYNTMINGGVRC 62
+KIHA +I T +S+ QL+++ +VF ++ +F +NT+ G VR
Sbjct: 28 KKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRN 87
Query: 63 LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
++ L+ ++ DE + + G + S +L C
Sbjct: 88 QLPFE---SVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLG 144
Query: 123 FGIIRLLIMFQKMPE-------------RDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
L++M+ K E +DLV+WN I++ + G L F ++
Sbjct: 145 IVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCAD 204
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
S + SA + L+ G ++ R E ++ V + +DM+LKCG
Sbjct: 205 AVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCG----- 259
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
ST+ A + F+ M +RN++SW +I ++ G + F
Sbjct: 260 -----------------STEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMM 302
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAKFT------YTCYFVCMVDLLGLS 330
F+ +LS CSH+G V +GK YF+ M + ++ CMVDLLG S
Sbjct: 303 QNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRS 362
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
GLL EA + I +M +P IWGALLGAC H + L + V L++
Sbjct: 363 GLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVE 409
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/370 (27%), Positives = 148/370 (40%), Gaps = 79/370 (21%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCG------------------------------- 101
+HG V K + D + + I+MH KCG
Sbjct: 118 QVHGAVVKLGYFKDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKG 177
Query: 102 AVDYAESAFLRMLNPSLFCW--------KFGII-RLLIMFQKMPERDLVSWNTMISILTR 152
+D A F + L CW K+G + + + + PE+D+VSWNT+I+ T
Sbjct: 178 ELDIARQLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTA 237
Query: 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
G E L E+ G + S A++ L G +HS + P +
Sbjct: 238 KGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCI---- 293
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
SI G ALV+MYA+ G Q A F M R++ +W +I
Sbjct: 294 ------------------SILPGNALVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIGG 335
Query: 273 FSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----T 315
+ G E+ FF F+ +L CSH+G V G+ YF+ M
Sbjct: 336 LAFHGQAEQSVQFFNKMLDEGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEP 395
Query: 316 YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ C+VD+LG SGLL EA ++ M +P VIW LLGAC H + L +L L
Sbjct: 396 NARHYSCIVDMLGRSGLLDEAFAIVSSMRCEPAVVIWRTLLGACRIHGDVALGKLARERL 455
Query: 376 LQLDVKVFGS 385
L+++ G
Sbjct: 456 LKMNEDASGD 465
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 42/187 (22%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAE 244
G +H VV + D FV + LI+M+ KCG E + A++ +A
Sbjct: 116 GYQVHGAVVKLGYFKDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAA 175
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKG 304
G A F+ ++++ W V+++A+++ G +EK R G P
Sbjct: 176 KGELDIARQLFDECQHKDLVCWNVMVAAYAKYGEMEKAR----------GLLDRAPEKDV 225
Query: 305 KHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDE------MPSKPTCVIWGALLGA 358
+ T + +T GLL EA +++DE MP + T V +LL +
Sbjct: 226 VSWNTIITGYT-------------AKGLLKEALEVLDEMRCVGLMPDEATIV---SLL-S 268
Query: 359 CCSHYNT 365
CC++ +
Sbjct: 269 CCANLGS 275
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 162/377 (42%), Gaps = 73/377 (19%)
Query: 28 SIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE 87
S+F +++ D G FT+ T++ C+ + + +HGL+ K+ + S
Sbjct: 138 SVFAEMMRSD-------GKPNEFTFATVLTS---CIRASGLALGKQIHGLIVKWNYDSHI 187
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+ S +DM+ K G ++ A +F+ +PERD+VS +I
Sbjct: 188 FVGSSLLDMYAKAGQIEEARE----------------------IFECLPERDVVSCTAII 225
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ + G E L F L + G + + YA+ +A + + L+ G H V+ E
Sbjct: 226 AGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELP 285
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
+ + LIDMY KCG + A F+ M R ISW
Sbjct: 286 FYAVLQNSLIDMYSKCG----------------------NLSYAQRLFDNMPERTAISWN 323
Query: 268 VLISAFSQAG----VLEKPRFF----------FFFVSLLSGCSHSGPVTKGKHYFTAMAK 313
++ +S+ G VLE R +++LSGCSH G + M
Sbjct: 324 AMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVA 383
Query: 314 FTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
Y T ++ C+VD+LG +G + EA + I MPSKPT + G+LLGAC H + +
Sbjct: 384 GEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIG 443
Query: 369 ELVMRNLLQLDVKVFGS 385
E V L++++ + G+
Sbjct: 444 EYVGHRLIEIEPENAGN 460
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 39/248 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+ +MPE+++VSW MIS ++ G E L F E+ + +AT ++
Sbjct: 108 VLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASG 167
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H +V +FVGS L+D MYA+ G ++
Sbjct: 168 LALGKQIHGLIVKWNYDSHIFVGSSLLD----------------------MYAKAGQIEE 205
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A FE + R+++S +I+ ++Q G+ E+ F + SLL+ S
Sbjct: 206 AREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSG 265
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ GK + + Y V ++D+ G L A++L D MP + T + W A
Sbjct: 266 LALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPER-TAISWNA 324
Query: 355 LLGACCSH 362
+L H
Sbjct: 325 MLVGYSKH 332
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 101/259 (38%), Gaps = 52/259 (20%)
Query: 123 FGIIRLLIM-FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYAT 180
F ++RL+ F P L ++ IS L +G E L + L GF L
Sbjct: 2 FNLMRLIHRSFSSSPNSVLQTFRP-ISQLCSNGRLQEALLEMVMLGPEIGFHCYDALLNA 60
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
RA L G +H+ ++ ++ + L+ Y KC C
Sbjct: 61 CLDKRA----LREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC--------------- 101
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFF 286
+ A + M +N++SW +IS +SQ G KP F
Sbjct: 102 -------LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPN-EF 153
Query: 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY-FV--CMVDLLGLSGLLGEAKKLIDEM 343
F ++L+ C + + GK + K+ Y + FV ++D+ +G + EA+++ + +
Sbjct: 154 TFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECL 213
Query: 344 PSKP----TCVIWG-ALLG 357
P + T +I G A LG
Sbjct: 214 PERDVVSCTAIIAGYAQLG 232
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 154/349 (44%), Gaps = 72/349 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ T++ C +G +K +H V F + + S +DM+ KCG+V ++
Sbjct: 264 FTFGTVLTA---CGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQR- 319
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F +MP ++ VSW+ ++ ++G + I+++
Sbjct: 320 ---------------------IFDRMPIKNSVSWSALLGGYCQNG----DFKSVIQIFRK 354
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + T A + + G +H + + DV V S L+D+Y KCGC
Sbjct: 355 MEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGC---- 410
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------- 280
+ A F+ M RN+I+W +I F+Q G E
Sbjct: 411 ------------------IEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQM 452
Query: 281 -----KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLS 330
KP + F + +L CSH G V +G+ YF +M K Y ++ CMVDLLG +
Sbjct: 453 VKEGIKPDYISF-IGILFACSHRGLVDEGREYFISMTK-DYGIKVGIEHYSCMVDLLGRA 510
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
GLL EA+ LI+ + +W ALLGAC + N ++AE + + +++L+
Sbjct: 511 GLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELE 559
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 140/346 (40%), Gaps = 63/346 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT + +I C +G++K+ HG+V F S+ IA + IDMH + A+D A
Sbjct: 162 FTLSAVIKA---CSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQL 218
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-N 168
F +L P C W ++IS LTR+ F E L F + +
Sbjct: 219 FDELLEPDAIC----------------------WTSIISALTRNDFFDEALRFFYSMQRD 256
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
HG + T +A ++ L+ G +H++V+ +V V S L+DMY KCG G
Sbjct: 257 HGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGE 316
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----------V 278
I F+ M +N +SW L+ + Q G
Sbjct: 317 SQRI----------------------FDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRK 354
Query: 279 LEKPRFFFFFVSLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCMVDLLGLSGLLGE 335
+EK + F ++L C+ V +GK + + +VDL G +
Sbjct: 355 MEKVD-LYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEY 413
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
A+ + D+MP + + W +++G + + A + +++ +K
Sbjct: 414 AQTIFDQMPVR-NLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIK 458
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 118/272 (43%), Gaps = 40/272 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + +D++SW +MIS R G +L F ++ +G ++ + A + + D
Sbjct: 117 VFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGD 176
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G H V+ G +S+ I AL+ M+ +
Sbjct: 177 LKLGRIFHGVVLG----------------------RGFDSNYVIASALIDMHGRNCALDD 214
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF-------------FFFVSLLSGCS 296
A F+ + + I W +ISA ++ ++ RFF F F ++L+ C
Sbjct: 215 ARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG 274
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ G + +GK + + V +VD+ G G +GE++++ D MP K + V W
Sbjct: 275 NLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNS-VSWS 333
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
ALLG C + + K + R + ++D+ FG+
Sbjct: 334 ALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGT 365
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+LYA+ V G +H+ V+ D FVG+ L+ +Y K G + E
Sbjct: 60 VLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPE------ 113
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF--------- 285
T+K F+ + +++ISW +IS + + G + F
Sbjct: 114 ------------TRK---VFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVE 158
Query: 286 ---FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKL 339
F +++ CS G + G+ + + + +V ++D+ G + L +A++L
Sbjct: 159 PNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQL 218
Query: 340 IDEMPSKPTCVIWGALLGA 358
DE+ +P + W +++ A
Sbjct: 219 FDELL-EPDAICWTSIISA 236
>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 637
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 158/340 (46%), Gaps = 47/340 (13%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK--- 122
G+ K+ +H V KF FV + + + ++++VK G V A F + S+ W
Sbjct: 137 GDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFL 196
Query: 123 FGIIRL------LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGFGLSS 175
G+++ ++F +MPER+ V+W MI +GF E E+ + GF LS
Sbjct: 197 EGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSF 256
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+ + SA + D+ G +H V +M G++ + +G
Sbjct: 257 VTLCSVLSACSQSGDVCVGRWVHCYAVK--------------EM-------GLDFGVMVG 295
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------------VLEKPR 283
+LV MYA+ G A F M +RN+++W ++ + G V E
Sbjct: 296 TSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEEVKP 355
Query: 284 FFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKL 339
F++LLS CSHSG V KG YF + ++ CMV LLG +G L EA+ +
Sbjct: 356 DGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIM 415
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ M P V+ G+L+G+C +H +L E +MR+LL++D
Sbjct: 416 VKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMD 455
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 111/269 (41%), Gaps = 36/269 (13%)
Query: 131 MFQKMPE--RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS--ARA 186
+F ++P+ +D V + +I RH FE+L FI++ L ++ A + AR
Sbjct: 79 LFDEIPQSHKDSVDYTALI----RHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARL 134
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM----- 241
D + G +H VV V + L+++Y+K G G + G + ++
Sbjct: 135 GGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSC 194
Query: 242 YAEG----GSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLEKPRF------ 284
+ EG S + + F+ M RN ++W V+I + G +L++ F
Sbjct: 195 FLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRL 254
Query: 285 -FFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV----CMVDLLGLSGLLGEAKKL 339
F S+LS CS SG V G+ K + V +VD+ G + A +
Sbjct: 255 SFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSV 314
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLA 368
M K V W A+LG H K+A
Sbjct: 315 FRSM-LKRNVVAWNAMLGGLAMHGMGKIA 342
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 164/379 (43%), Gaps = 58/379 (15%)
Query: 20 LISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYN-TMINGGVRCLCVGNIKMALHLHGLV 78
+I+ C+ S+ +++ ++F + +F TM++ V C G +++ LH +
Sbjct: 269 MIAGCIRSN----RLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYI 324
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ F ++A + +DM+ KC + A + +F R
Sbjct: 325 LRNGFSVSLALATALVDMYGKCSDIRNARA----------------------LFDSTQNR 362
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
D++ W M+S + + F ++ G + + + S A L+ G +H
Sbjct: 363 DVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVH 422
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQ 249
S + +D + + L+DMY KCG I I + A++T +A G +
Sbjct: 423 SYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGE 482
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFT 309
+A F M R+ + KP F + LL CSH+G VT+GK F
Sbjct: 483 EALDIFAEMERQGV-----------------KPNDITF-IGLLHACSHAGLVTEGKKLFE 524
Query: 310 AMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
M ++ CMVDLLG +GLL EA ++I MP KP ++WGAL+ AC H N
Sbjct: 525 KMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNP 584
Query: 366 KLAELVMRNLLQLDVKVFG 384
+L EL LL+++ + G
Sbjct: 585 QLGELAATQLLEIEPENCG 603
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 129/320 (40%), Gaps = 73/320 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V ++ +HG V K D + + + M+ +C V+YA
Sbjct: 104 CGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYAR-------------- 149
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRH---GFGFETL--CTFIELWNHGFGLSSM 176
++F KM ERD+VSW+TMI L+R+ E + F+++ + SM
Sbjct: 150 --------LVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSM 201
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPS--LDVFVGSGLIDMYLKCGCNGIESSIQI 234
+ A +A ++ G +H+ V+ + + V + L+DMY KCG G+ +
Sbjct: 202 VNLFADTA-----NMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQL-- 254
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------- 287
F ++++ ++SW +I+ ++ LE+ F
Sbjct: 255 --------------------FNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENI 294
Query: 288 ------FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKK 338
+SL+ C +G + GK H + F+ + +VD+ G + A+
Sbjct: 295 FPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARA 354
Query: 339 LIDEMPSKPTCVIWGALLGA 358
L D ++ +IW A+L A
Sbjct: 355 LFDSTQNRDV-MIWTAMLSA 373
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 153/368 (41%), Gaps = 65/368 (17%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLC--VGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
VF ++G R F + M + C +G++++ + G V + + I + I M
Sbjct: 209 EVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISM 268
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ KCG ++ A +F M RD+++WN +IS ++G
Sbjct: 269 YAKCGELESARR----------------------IFDGMAARDVITWNAVISGYAQNGMA 306
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E + F + + + SA A++ L+ G + D+FV + L
Sbjct: 307 DEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATAL 366
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
IDMY A+ GS A F+ M ++N SW +ISA +
Sbjct: 367 IDMY----------------------AKSGSLDNAQRVFKDMPQKNEASWNAMISALAAH 404
Query: 277 GVLEKPRFFF---------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYT 317
G ++ F FV LLS C H+G V +G F M+
Sbjct: 405 GKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKI 464
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
++ CMVDLL +G L EA LI +MP KP V GALLGAC S N + E VMR +L+
Sbjct: 465 EHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILE 524
Query: 378 LDVKVFGS 385
+D G+
Sbjct: 525 VDPSNSGN 532
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 135/324 (41%), Gaps = 62/324 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ A H L+ K SD A S I + +CG V A
Sbjct: 132 CANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARK------------- 178
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYAT 180
+F ++P RD VSWN+MI+ + G E + F E+ GF M +
Sbjct: 179 ---------VFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVS 229
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
A + DLE G + VV +L+ ++GS LI MY KCG +ES+ +I
Sbjct: 230 LLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCG--ELESARRI------ 281
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------- 287
F+ M+ R++I+W +IS ++Q G+ ++ F
Sbjct: 282 --------------FDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKIT 327
Query: 288 FVSLLSGCSHSGPVTKGKH--YFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMP 344
++LS C+ G + GK + + F + + ++D+ SG L A+++ +MP
Sbjct: 328 LTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMP 387
Query: 345 SKPTCVIWGALLGACCSHYNTKLA 368
K W A++ A +H K A
Sbjct: 388 QKNEAS-WNAMISALAAHGKAKEA 410
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 154/337 (45%), Gaps = 52/337 (15%)
Query: 74 LHGLVKKFYFVSDESIAKSSI-DMHVKCGAVDYAESAFLRMLNPSLFCWKF---GIIR-- 127
LHG K + + ++I M+ K G V A F M + + W G +R
Sbjct: 70 LHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSG 129
Query: 128 ----LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+ +F KMPE DL+SW M++ + GF E L F E+ G + A +
Sbjct: 130 QVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALN 189
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A ++ L G +H V+ + +V V + LID+Y +CGC +E + ++
Sbjct: 190 ACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGC--VEFAREV--------- 238
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
F+ M +R ++SW +I F+ G + +F F
Sbjct: 239 -----------FDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTG 287
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
L+ CSH G V +G +F +M K Y ++ C+VDL +G L +A K++ MP
Sbjct: 288 ALTACSHVGLVDEGLRFFQSM-KRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPM 346
Query: 346 KPTCVIWGALLGACCSH-YNTKLAELVMRNLLQLDVK 381
KP V+ G+LL AC +H NT LAE +M++L L+VK
Sbjct: 347 KPNEVVIGSLLAACRNHGNNTVLAERLMKHLSDLNVK 383
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 27/166 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + L +H V F ++ ++ S ID++ +CG V++A
Sbjct: 191 CTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARE------------- 237
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F KM +R +VSWN++I +G E+L F ++ GF +++ + A
Sbjct: 238 ---------VFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGA 288
Query: 182 FSARASVYDLEWGPHLHS---RVVHMEPSLDVFVGSGLIDMYLKCG 224
+A + V ++ G R ++ P ++ + L+D+Y + G
Sbjct: 289 LTACSHVGLVDEGLRFFQSMKRDYNISPRIEHY--GCLVDLYSRAG 332
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSW + I++LTR E F ++ G + + + S
Sbjct: 11 IVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDF----------- 59
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
PS +G L K G + + + +G A++ MY++ G +KA L F+ M
Sbjct: 60 ------PSGSETLGDLLHGYACKLGLD--RNHVMVGTAILGMYSKRGRVKKARLVFDYMD 111
Query: 260 RRNMISWMVLISAFSQAG 277
+N ++W +I + ++G
Sbjct: 112 DKNSVTWNTMIDGYMRSG 129
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 154/358 (43%), Gaps = 69/358 (19%)
Query: 41 FCDIGPRYLFTYNTMINGGVRCL--CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
C I P +T+ ++N + L C G LH + K + + I ++
Sbjct: 60 LCGISPNS-YTFGFVLNACCKLLRLCEGQ-----ELHSQIVKAGLDFETPLLNGLIKLYA 113
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFE 158
CG +DYA +MF +MPE D SW+TM+S +++G E
Sbjct: 114 ACGCMDYA----------------------CVMFDEMPEPDSASWSTMVSGYSQNGQAVE 151
Query: 159 TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
TL E+ + A+ + L+ G +HS ID
Sbjct: 152 TLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHS----------------YID 195
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
G++ + +G ALV MY++ GS A F+ M+ R++ +W ++I+ ++ G
Sbjct: 196 K------EGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGH 249
Query: 279 LEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFV 321
EK F F S+LS SHSG V KG F M ++ T ++
Sbjct: 250 DEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYG 309
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
CMVDL +G++G A K I MP +P V+W LLGAC +H L E + R +L+LD
Sbjct: 310 CMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLD 367
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 171/434 (39%), Gaps = 95/434 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC + L + +++H Q+ S +F+Q ++ VF + R +
Sbjct: 176 LKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNI 235
Query: 50 FTYNTMING-GVRCLC-------------------------------VGNIKMALHLHGL 77
++ +MI+G G L V +++ +HG
Sbjct: 236 VSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGC 295
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V K + + S M+ KCG V A S F +M P
Sbjct: 296 VVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIP--------------------- 334
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+++ WN MIS ++G+ E + F E+ + S+ +A A A V L+ +
Sbjct: 335 -NVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWM 393
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEGGST 248
+ E DVFV + LIDM+ KCG ++ + + A++ Y G
Sbjct: 394 GDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRG 453
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYF 308
Q A + L A QAGV FV LL+ C+HSG V +G F
Sbjct: 454 QDA---------------IDLFYAMKQAGVCPND---VTFVGLLTACNHSGLVEEGWELF 495
Query: 309 TAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
+M + ++ C+VDLLG SG L EA I MP +P +WGALLGAC + +
Sbjct: 496 HSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHV 555
Query: 366 KLAELVMRNLLQLD 379
L E L LD
Sbjct: 556 TLGEYAAEQLFSLD 569
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 125/316 (39%), Gaps = 44/316 (13%)
Query: 86 DESIAKSSID-MHVKCGAVDYAESAFL--RMLNPSLFCWKFGIIRLLIMFQKMPERDLVS 142
D S+ K ++ +H + ES FL + +N S + G R + F + PE +
Sbjct: 79 DHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKV--FDEFPEPSVFL 136
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN +I + H F + + + + G A + V LE G +H ++
Sbjct: 137 WNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIF 196
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+ DVFV +GL+ +Y KC G ++A + FE + RN
Sbjct: 197 RLGFESDVFVQNGLVALYAKC----------------------GRVEQARIVFEGLDDRN 234
Query: 263 MISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYFT 309
++SW +IS + Q G+ +E R F VS+L + + +GK
Sbjct: 235 IVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHG 294
Query: 310 AMAKFTYTCYFVCMVDLLGLSGLLGE---AKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
+ K ++ L + G+ A+ D+M P ++W A++ + T
Sbjct: 295 CVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQM-EIPNVMMWNAMISGYAKNGYTN 353
Query: 367 LAELVMRNLLQLDVKV 382
A + + ++ +++
Sbjct: 354 EAVGLFQEMISKNIRT 369
>gi|302803175|ref|XP_002983341.1| hypothetical protein SELMODRAFT_117959 [Selaginella moellendorffii]
gi|300149026|gb|EFJ15683.1| hypothetical protein SELMODRAFT_117959 [Selaginella moellendorffii]
Length = 421
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 167/403 (41%), Gaps = 74/403 (18%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFLQL-------IDDDYRVFCDIGPRYLFTYNTMI 56
CGSL P AR++ +L + ++S + L + +F + R T T +
Sbjct: 36 CGSL---PDARRLFDRLPARSIVSWNAMMLGYAENKEAESALELFSLMEKRCQPTSRTFV 92
Query: 57 NGGVRCLCVGNIKMALHLHGLVKKFY-FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115
C + + L G V K Y F D +A S +DM+ KCG+
Sbjct: 93 AALKACAVLAEAEEGRELEGKVAKIYGFQWDLFVANSLVDMYAKCGS------------- 139
Query: 116 PSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
++ +F M D+VSWN++IS + G L F+ + G S
Sbjct: 140 ---------MVDSRRVFDGMRRHDVVSWNSLISGYADNDQGEAALELFVPMELEGCAHDS 190
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+ + A V L+ G LH ++ + DV + + L+D Y KC
Sbjct: 191 RTFLASLKACGCVGALDIGRTLHGKIRDLGLDGDVVIATSLVDFYGKC------------ 238
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE------------KPR 283
GS A+ F + +++++W L++ +S+ G E +PR
Sbjct: 239 ----------GSMVDAEQVFSSIVTKDIVAWNALLTGYSRQGDTEALFQAFDRMMTSRPR 288
Query: 284 FF---FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEA 336
F+ LL+ CSHSG V +GK YF AM ++ C+VD+LG S L EA
Sbjct: 289 VRPDGVTFLCLLTACSHSGLVDQGKRYFEAMKSIHGLDPGMEHYHCLVDILGRSNRLEEA 348
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++ EMP V W +L AC N ++A++ LL+LD
Sbjct: 349 VAMVKEMPVVANTVSWTTVLSACQKWKNVEVAKVAFDALLELD 391
>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 701
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 178/448 (39%), Gaps = 110/448 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTC------LISSIFLQ-----LIDDDYRVFCDIGPRYL 49
++AC LKS+ ++++ +IS +++ I L +I D R+F ++ R L
Sbjct: 130 VEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLMHVKCGMIIDARRLFDEMPERNL 189
Query: 50 FTYNTMINGGVRCLCVGNIKMAL-----------------------------------HL 74
F+YN++I+G V GN + A L
Sbjct: 190 FSYNSIISGFVN---FGNYEEAFELFKLMWEELSDCETHTFAVMLRASAGLWSVYVGKQL 246
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H K V + ++ IDM+ KCG ++ A AF +
Sbjct: 247 HVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAF----------------------ES 284
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
MPE+ V+WN +++ HG+ E LC E+ + G + + + LE
Sbjct: 285 MPEKTTVAWNNIVAGYALHGYSEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELT 344
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
H+ ++ +G ES I ALV Y++ G A
Sbjct: 345 KQAHASLIR----------------------SGFESEIVANTALVDFYSKWGRVDTARYV 382
Query: 255 FELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGPV 301
F+ + R+N+ISW L+ ++ G + R F F+++LS C++SG
Sbjct: 383 FDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKVAPNHVTFLAVLSACAYSGLS 442
Query: 302 TKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+G F +M++ ++ CM++LLG GLL EA I P K T +W ALL
Sbjct: 443 EQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLN 502
Query: 358 ACCSHYNTKLAELVMRNLLQLDVKVFGS 385
AC N +L +V L + + G+
Sbjct: 503 ACRMQGNLELGRVVAEKLYGMGPEKLGN 530
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 125/328 (38%), Gaps = 64/328 (19%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY+ ++ C+ + +I+ ++G + F ++ + + MHVKCG
Sbjct: 125 TYDALVEA---CIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLMHVKCGM-------- 173
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
II +F +MPER+L S+N++IS G E F +W
Sbjct: 174 --------------IIDARRLFDEMPERNLFSYNSIISGFVNFGNYEEAFELFKLMWEEL 219
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ +A A A ++ + G LH + + + FV GLIDMY KC
Sbjct: 220 SDCETHTFAVMLRASAGLWSVYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKC------- 272
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-------- 282
G + A AFE M + ++W +++ ++ G E+
Sbjct: 273 ---------------GDIEDARCAFESMPEKTTVAWNNIVAGYALHGYSEEALCLLYEMR 317
Query: 283 -------RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFVCMVDLLGLSGLLG 334
+F + +S +TK H + F + +VD G +
Sbjct: 318 DSGVSMDQFTLSIMIRISTRLAKLELTKQAHASLIRSGFESEIVANTALVDFYSKWGRVD 377
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSH 362
A+ + D++P K + W AL+G +H
Sbjct: 378 TARYVFDKLPRK-NIISWNALMGGYANH 404
>gi|255578286|ref|XP_002530010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530489|gb|EEF32372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 487
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 150/335 (44%), Gaps = 49/335 (14%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C VGN++M HG V K F + + + ++++VKC + A+ F M + W
Sbjct: 140 CARVGNLEMGRQAHGCVVKMGFGINVKVCNAVMNVYVKCRLMGEAKGVFSEMGERDIVSW 199
Query: 122 KF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGF 171
G+ ++F +MPER+ V W MIS GF E E+
Sbjct: 200 TALLEGVVNWEGVENGKVVFDQMPERNEVGWTIMISGYVGSGFCKEGFLLLSEMVLGLRL 259
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVV-HMEPSLDVFVGSGLIDMYLKCGCNGIES 230
L+ + + SA A D+ G +H + M +D+ VG+ LIDMY KC
Sbjct: 260 ELNYVTLCSILSACAQSGDVVMGRWVHVYALKKMGREIDMMVGTALIDMYAKC------- 312
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------------V 278
G + A F+ + RRN+++W ++ + G +
Sbjct: 313 ---------------GRIKMAYEVFKYLPRRNVVAWNAILGGLAMHGKGRIVLVIFPKMI 357
Query: 279 LEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLG 334
E F+++LS CSHSG V +G YF + +++ T ++ C+VDLLG +G L
Sbjct: 358 QETKPDDLTFIAVLSACSHSGLVDQGCQYFHILESEYGITPKIEHYACVVDLLGRAGRLE 417
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
EA+ LI +MP P + G+LLG+C H +L +
Sbjct: 418 EAEMLIKKMPMPPNEFVLGSLLGSCYVHGKLQLGK 452
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 117/277 (42%), Gaps = 31/277 (11%)
Query: 131 MFQKMPE--RDLVSWNTMISILTRH-GFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F ++P +D W +++S L +H F E+ G L + + FS A
Sbjct: 83 LFDQIPNSHKDTADWTSLLSCLAKHTSTPRNAFSLFEEMRKRGVILDDVAFVCVFSLCAR 142
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI--QIGK-------AL 238
V +LE G H VV M ++V V + ++++Y+KC G + ++G+ AL
Sbjct: 143 VGNLEMGRQAHGCVVKMGFGINVKVCNAVMNVYVKCRLMGEAKGVFSEMGERDIVSWTAL 202
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-----------RFFFF 287
+ + + F+ M RN + W ++IS + +G ++ R
Sbjct: 203 LEGVVNWEGVENGKVVFDQMPERNEVGWTIMISGYVGSGFCKEGFLLLSEMVLGLRLELN 262
Query: 288 FV---SLLSGCSHSGPVTKGK----HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLI 340
+V S+LS C+ SG V G+ + M + ++D+ G + A ++
Sbjct: 263 YVTLCSILSACAQSGDVVMGRWVHVYALKKMGREIDMMVGTALIDMYAKCGRIKMAYEVF 322
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+P + V W A+LG H ++ ++ ++Q
Sbjct: 323 KYLPRR-NVVAWNAILGGLAMHGKGRIVLVIFPKMIQ 358
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/445 (24%), Positives = 183/445 (41%), Gaps = 118/445 (26%)
Query: 1 MKACGSLKSLPIARKIHAQL----------ISTCLISSIFLQL--IDDDYRVFCDIGPRY 48
+ ACG +++ R ++ Q+ I LIS ++ + + D F + RY
Sbjct: 229 LSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALIS-MYTKCGCLSDALEAFQAMPARY 287
Query: 49 LFTYNTMINGGVR--------------------------------CLCVGNIKMALHLHG 76
++NT+I+G V+ C +G ++ +H+H
Sbjct: 288 TKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHS 347
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
+K D + S I+M+ KCG + AE +FQ M
Sbjct: 348 YIKDNGICCDNILTNSLINMYAKCGDMAAAER----------------------VFQTMT 385
Query: 137 ERDLVSWNTMI-SILTRHGFG-----FETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
++D+VSW M+ + H F FE + E+ H L S+L SA + +
Sbjct: 386 KKDVVSWTVMVCGYVKGHQFTMAFNLFEEM-KIAEVVAHEMALVSLL-----SACSQLGA 439
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G +HS + M + D+ + S L+DMY KCGC S I
Sbjct: 440 LDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEI------------------ 481
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGV-------------LEKPR-FFFFFVSLLSGCS 296
F M + +SW +I + G L+ P+ ++L C+
Sbjct: 482 ----FRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACA 537
Query: 297 HSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
H G V +G YF M+ T ++ C+VDLLG +G+L EA I +MP +P VIWG
Sbjct: 538 HVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWG 597
Query: 354 ALLGACCSHYNTKLAELVMRNLLQL 378
+LL AC H+ L +++ ++++ +
Sbjct: 598 SLLAACRVHHRMDLGKVIGQHIVNV 622
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 117/299 (39%), Gaps = 61/299 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H LV++ F SD + V G V+Y AF + S +F+
Sbjct: 143 IHALVRRIGFTSD---------VFVMSGLVNYY-GAFRSVEEASK------------VFE 180
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+M ERD+VSW +MIS + G + L E+ G + + + SA ++
Sbjct: 181 EMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDE 240
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G ++++V DV + + LI MY KCGC + AL
Sbjct: 241 GRWVYNQVGKFGIEADVDIRNALISMYTKCGC--------LSDALE-------------- 278
Query: 254 AFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGP 300
AF+ M R SW LI F Q E R F VS+LS C+ G
Sbjct: 279 AFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGE 338
Query: 301 VTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ KG H + + C + ++++ G + A+++ M +K V W ++
Sbjct: 339 LRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTM-TKKDVVSWTVMV 396
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 117/325 (36%), Gaps = 67/325 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGA---VDYAESAFLRMLNPSLFCWKFGIIRLLI 130
LHG + + + SD +A I + A + YA F M P+ F W
Sbjct: 36 LHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVW--------- 86
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
N MI + + L F E+ G + A SA A+
Sbjct: 87 -------------NCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAG 133
Query: 191 LEW---GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
L+W G +H+ V + + DVFV SG LV Y S
Sbjct: 134 LKWRSNGDAIHALVRRIGFTSDVFVMSG----------------------LVNYYGAFRS 171
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294
++A FE M R+++SW +ISA +Q G +K +SLLS
Sbjct: 172 VEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSA 231
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C + V +G+ + + KF ++ + G L +A + MP++ T
Sbjct: 232 CGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYT-KS 290
Query: 352 WGALLGACCSHYNTKLAELVMRNLL 376
W L+ ++ K A + +L
Sbjct: 291 WNTLIDGFVQNHEHKEALRIFEEML 315
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 176/376 (46%), Gaps = 62/376 (16%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+ D Y+VF ++ + +F + ++ V C ++ A L L + D +
Sbjct: 10 VADAYKVFAEMRDKNVFAWTAVVAAHVAC---HDMVSARRLFDLAPQ----CDVVLWNVI 62
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKF--------GIIRLLI-MFQKMPERDLVSWN 144
+ +++ G + A F RM + + W G + L + +F++MP R++ SWN
Sbjct: 63 VSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWN 122
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA-FSARASVYDLEWGPHLHSRVVH 203
+I R+G E L F + G + + A SA + + DLE G +H
Sbjct: 123 GLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVH----- 177
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
V+ S G + ++ +G AL+ MYA+ G +KA F+ + +++
Sbjct: 178 ------VYADS-----------IGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDI 220
Query: 264 ISWMVLISAFS----------------QAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHY 307
I+W +I++ + +AG E+P F V +LS C+H G V G +
Sbjct: 221 ITWNTIINSLAMHXHAADALSLFEGMKRAG--ERPDGVTF-VGILSACTHMGLVRNGFLH 277
Query: 308 FTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
F +M ++ CMVDLLG +GL+ +A ++ +MP +P VIW ALLGAC +
Sbjct: 278 FQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYK 337
Query: 364 NTKLAELVMRNLLQLD 379
N ++AEL ++ L++L+
Sbjct: 338 NVEMAELALQRLIELE 353
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 155/352 (44%), Gaps = 48/352 (13%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM+ + C +G+ + A + +K+ D + + IDM+ + + A+ F RM
Sbjct: 219 TMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRM 278
Query: 114 LNPSLFCW--------KFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164
++ W K G + +F MP+RD++SW +MI+ ++ + + F
Sbjct: 279 RERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQ 338
Query: 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
E+ + A+ SA A + L+ G +H + D++VG+ LIDMY C
Sbjct: 339 EMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMY--CK 396
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF 284
C +E ++++ F M ++ +SW +IS + G
Sbjct: 397 CGMVEKALEV--------------------FHRMKDKDSVSWTSVISGLAVNGFANSALD 436
Query: 285 FF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLL 327
F FV +L C+H+G V KG YF +M ++ C+VDLL
Sbjct: 437 LFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLL 496
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
SG + +A + I +MP P V+W LL AC H N LAE+ + LL+LD
Sbjct: 497 SRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELD 548
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 104/271 (38%), Gaps = 47/271 (17%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F ++ LV WN MI L++ E + + + + G +++ F A A V
Sbjct: 71 LVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVS 130
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D+ G +H + + +FV + LI MY CG Q+G A Q
Sbjct: 131 DIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCG--------QLGFA-----------Q 171
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
K F+ M R+++SW LI +SQ ++ F V ++ CS
Sbjct: 172 K---MFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACS 228
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFV-------CMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
H G + +M K+ ++D+ G L A+ + D M +
Sbjct: 229 HLGDW----EFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRER-NI 283
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
V W AL+ N A + N+ + DV
Sbjct: 284 VSWNALVMGHAKVGNLTAARKLFDNMPKRDV 314
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/445 (24%), Positives = 183/445 (41%), Gaps = 118/445 (26%)
Query: 1 MKACGSLKSLPIARKIHAQL----------ISTCLISSIFLQL--IDDDYRVFCDIGPRY 48
+ ACG +++ R ++ Q+ I LIS ++ + + D F + RY
Sbjct: 229 LSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALIS-MYTKCGCLSDALEAFQAMPARY 287
Query: 49 LFTYNTMINGGVR--------------------------------CLCVGNIKMALHLHG 76
++NT+I+G V+ C +G ++ +H+H
Sbjct: 288 TKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHS 347
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
+K D + S I+M+ KCG + AE +FQ M
Sbjct: 348 YIKDNGICCDNILTNSLINMYAKCGDMAAAER----------------------VFQTMT 385
Query: 137 ERDLVSWNTMI-SILTRHGFG-----FETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
++D+VSW M+ + H F FE + E+ H L S+L SA + +
Sbjct: 386 KKDVVSWTVMVCGYVKGHQFTMAFNLFEEM-KIAEVVAHEMALVSLL-----SACSQLGA 439
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L+ G +HS + M + D+ + S L+DMY KCGC S I
Sbjct: 440 LDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEI------------------ 481
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGV-------------LEKPR-FFFFFVSLLSGCS 296
F M + +SW +I + G L+ P+ ++L C+
Sbjct: 482 ----FRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACA 537
Query: 297 HSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
H G V +G YF M+ T ++ C+VDLLG +G+L EA I +MP +P VIWG
Sbjct: 538 HVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWG 597
Query: 354 ALLGACCSHYNTKLAELVMRNLLQL 378
+LL AC H+ L +++ ++++ +
Sbjct: 598 SLLAACRVHHRMDLGKVIGQHIVNV 622
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 117/299 (39%), Gaps = 61/299 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H LV++ F SD + V G V+Y AF + S +F+
Sbjct: 143 IHALVRRIGFTSD---------VFVMSGLVNYY-GAFRSVKEASK------------VFE 180
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+M ERD+VSW +MIS + G + L E+ G + + + SA ++
Sbjct: 181 EMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDE 240
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G ++++V DV + + LI MY KCGC + AL
Sbjct: 241 GRWVYNQVGKFGIEADVDIRNALISMYTKCGC--------LSDALE-------------- 278
Query: 254 AFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSGP 300
AF+ M R SW LI F Q E R F VS+LS C+ G
Sbjct: 279 AFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGE 338
Query: 301 VTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ KG H + + C + ++++ G + A+++ M +K V W ++
Sbjct: 339 LRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTM-TKKDVVSWTVMV 396
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 117/325 (36%), Gaps = 67/325 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGA---VDYAESAFLRMLNPSLFCWKFGIIRLLI 130
LHG + + + SD +A I + A + YA F M P+ F W
Sbjct: 36 LHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVW--------- 86
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
N MI + + L F E+ G + A SA A+
Sbjct: 87 -------------NCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAG 133
Query: 191 LEW---GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
L+W G +H+ V + + DVFV SG LV Y S
Sbjct: 134 LKWRSNGDAIHALVRRIGFTSDVFVMSG----------------------LVNYYGAFRS 171
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294
++A FE M R+++SW +ISA +Q G +K +SLLS
Sbjct: 172 VKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSA 231
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
C + V +G+ + + KF ++ + G L +A + MP++ T
Sbjct: 232 CGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYT-KS 290
Query: 352 WGALLGACCSHYNTKLAELVMRNLL 376
W L+ ++ K A + +L
Sbjct: 291 WNTLIDGFVQNHEHKEALRIFEEML 315
>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 497
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 151/321 (47%), Gaps = 43/321 (13%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF------- 123
ALH H K + ++D + + IDM+ KCG +DYA F +M +L W
Sbjct: 111 ALHTHAF-KHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMK 169
Query: 124 --GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ L +F K+P +++VSW +I + E L F E+ G +
Sbjct: 170 NGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAI 229
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ L G +H V+ E +V V + LIDMY +CGC IE + Q+
Sbjct: 230 ISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGC--IELARQV------- 280
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPV 301
F+ MS+RN++SW +I F+ G+ +K FF CSH+G +
Sbjct: 281 -------------FDGMSQRNLVSWNSIIVGFAVNGLADKALSFF-------PCSHAGLI 320
Query: 302 TKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+G F + + ++ C+VDL +G L EA +I +MP P V+ G+LL
Sbjct: 321 DEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLA 380
Query: 358 ACCSHYNTKLAELVMRNLLQL 378
AC + + +LAE VM+ ++L
Sbjct: 381 ACRTQGDVELAEKVMKYQVEL 401
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 22/102 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + L +H LV K F + + S IDM+ +CG ++ A
Sbjct: 233 CANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQ------------- 279
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
+F M +R+LVSWN++I +G + L F
Sbjct: 280 ---------VFDGMSQRNLVSWNSIIVGFAVNGLADKALSFF 312
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/445 (23%), Positives = 181/445 (40%), Gaps = 104/445 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+KAC + + R+IH +I S ++ +DD +VF + R L
Sbjct: 217 LKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDL 276
Query: 50 FTYNTMING---------------GVRCLCVGNIKMAL-----------------HLHGL 77
+N +I+G G+R +G + L +H L
Sbjct: 277 ILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHAL 336
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+K F+ D + ID + KC + A IR+ F++
Sbjct: 337 AEKIGFIFDAHVVNGLIDSYWKCSCLSDA-------------------IRV---FEECSS 374
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D+++ +MI+ L++ G + F+E+ G + ++ +A AS+ E G +
Sbjct: 375 GDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQV 434
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ + D F G+ L+ Y KCG S + A+LAF
Sbjct: 435 HAHLIKRQFMSDAFAGNALVYTYAKCG----------------------SIEDAELAFSS 472
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+ R ++SW +I +Q G ++ F S+L C+H+G V +
Sbjct: 473 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA 532
Query: 305 KHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
K YF +M + ++ CM+DLLG +G L +A +L++ MP + +WGALLGA
Sbjct: 533 KRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASR 592
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
H + +L +L L L+ + G+
Sbjct: 593 VHKDPELGKLAAEKLFILEPEKSGT 617
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 136/333 (40%), Gaps = 101/333 (30%)
Query: 7 LKSLPIAR---KIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIG-PRYLFT 51
LK +P A+ ++HA ++T S +F+ +DD RVF + G R +
Sbjct: 17 LKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVS 76
Query: 52 YNTMING---------------------------GVRCL---CVG--NIKMALHLHGLVK 79
+N +++ G C+ C G NI +H +V
Sbjct: 77 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 136
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
+ + D A + +DM+VK G VD A ++F+KMP+ D
Sbjct: 137 RMGYEKDVFTANALVDMYVKMGRVDIAS----------------------VIFEKMPDSD 174
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSSMLYATAFSARASVYDLEWG 194
+VSWN +IS +G + +++ + G F LSS+L A A A +DL G
Sbjct: 175 VVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC---AGAGAFDL--G 229
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H ++ D ++G GL+DMY K + ++ ++++
Sbjct: 230 RQIHGFMIKANADSDDYIGVGLVDMYAK--NHFLDDAMKV-------------------- 267
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
F+ MS R++I W LIS S G ++ F+
Sbjct: 268 FDWMSHRDLILWNALISGCSHGGRHDEAFSIFY 300
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 121/315 (38%), Gaps = 66/315 (20%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
CV + ++ +H + F SD +A + + M+ G +D A F
Sbjct: 19 CVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF------------- 65
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+ ER+ VSWN ++S ++ + + F E+ G + ++ +
Sbjct: 66 --------DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A +++ G +H+ VV M DVF + L+DMY+K G I S I
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVI----------- 166
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISA----------------FSQAGVLEKPRFFFF 287
FE M +++SW LIS +G++ F
Sbjct: 167 -----------FEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPN---VFM 212
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMP 344
S+L C+ +G G+ H F A Y V +VD+ + L +A K+ D M
Sbjct: 213 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM- 271
Query: 345 SKPTCVIWGALLGAC 359
S ++W AL+ C
Sbjct: 272 SHRDLILWNALISGC 286
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 126/270 (46%), Gaps = 48/270 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER LVSWN+MI L R G L F E+ F + SA A +
Sbjct: 265 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGS 323
Query: 191 LEWGPHLHS---RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
L G H+ R ++ ++DV V + LI+MY KCG S
Sbjct: 324 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG----------------------S 361
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------FFVSLL 292
+ A+ F+ M +R++ SW +I F+ G E+ FF FV LL
Sbjct: 362 LRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLL 421
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
C+H G V KG+ YF M + Y ++ C+VDL+ +G + EA ++ MP KP
Sbjct: 422 IACNHRGFVNKGRQYFDMMVR-DYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKP 480
Query: 348 TCVIWGALLGACCSH-YNTKLAELVMRNLL 376
VIW +LL ACC + +L+E + RN++
Sbjct: 481 DAVIWRSLLDACCKKGASVELSEEIARNII 510
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 33/191 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC + +++H Q++ +++ +D +VF ++ R L
Sbjct: 215 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 274
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA------- 102
++N+MI+ VR G AL L +++ F D +S + G+
Sbjct: 275 VSWNSMIDALVR---FGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWA 330
Query: 103 ---------VDYAESAFLRMLNPSLFCWKFGIIRLL-IMFQKMPERDLVSWNTMISILTR 152
VD A ++ ++C K G +R+ +FQ M +RDL SWN MI
Sbjct: 331 HAFLLRKCDVDVAMDVLVKNSLIEMYC-KCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 389
Query: 153 HGFGFETLCTF 163
HG E + F
Sbjct: 390 HGRAEEAMNFF 400
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 168/403 (41%), Gaps = 86/403 (21%)
Query: 15 KIHAQLISTCLI----SSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVG---- 66
+IHA ++ T ++ SS + +I Y ++ LF Y M+ G+ C
Sbjct: 207 QIHAHVLRTNMLENHPSSFYWNIIIRSYTRL-EVPRIALFVYIDMLRAGILPDCYTLPIV 265
Query: 67 --------NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL 118
+ L LH + + F D+ I ++ K G ++ A
Sbjct: 266 FKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECA------------ 313
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
+F++ R L SWN +I+ L++ G E + FI+L G
Sbjct: 314 ----------CKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTI 363
Query: 179 ATAFSARASVYDLEWGPHLHSRV--VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ SA S+ +LE +H V V + ++ + + LIDMY KCG
Sbjct: 364 VSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCG------------ 411
Query: 237 ALVTMYAEGGSTQKADLA---FELMSRRNMISWMVLISAFSQAGVLEK------------ 281
+ DLA F M RN+ SW LI ++ G +++
Sbjct: 412 -------------RMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAG 458
Query: 282 -PRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEA 336
P FV +LS C H G + +GKHYF M ++ CMVDLL +GLL EA
Sbjct: 459 VPPNQVTFVGVLSACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEA 518
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+++I+EMP K +IWG L+G C H N ++ E ++L +L+
Sbjct: 519 RRMIEEMPMKANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELE 561
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 114/441 (25%), Positives = 189/441 (42%), Gaps = 71/441 (16%)
Query: 7 LKSLPIARKI-------HAQ--LISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMIN 57
L+ LP +R++ HA L +T L + D F + R FTY+ +I
Sbjct: 397 LRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMPRRDSFTYSFLI- 455
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
+ L + +H V K V D + + ID + K G A F M
Sbjct: 456 ---KALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERD 512
Query: 118 LFCWKFGIIRLL---------IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+ W + ++ +F +MPE+D VSWNT++ T+ G E F EL+
Sbjct: 513 VVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAG---EVEAAF-ELFQ 568
Query: 169 HGFGLSSMLYATAFSARASVYDLEW---------GPHLHSRVVHM-EPSLDVFVGSGLID 218
+ + ++T S DLE G +L + + M E S+++ V + ++
Sbjct: 569 RMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAA-VVS 627
Query: 219 MYLKCGCNG----------------IESSIQIGKALVTMYAEGGSTQKADLAFELMS-RR 261
+ C +G + S + AL+ M+ + G +AD F+ + ++
Sbjct: 628 ILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK 687
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF 308
+ +SW +I F+ G +K F +++LS C+H G V +G+ YF
Sbjct: 688 DSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYF 747
Query: 309 TAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
+ M + ++ CM+DLLG GL+ EA LI MP +P VIWG+LL AC H N
Sbjct: 748 SNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKN 807
Query: 365 TKLAELVMRNLLQLDVKVFGS 385
+ AE+ + L +L G+
Sbjct: 808 VEYAEIAVNELSKLQPSNAGN 828
>gi|297818474|ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322958|gb|EFH53379.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 399
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 126/267 (47%), Gaps = 39/267 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F ++P+ D+V W+ +++ R G G E L F E+ G TA +A A V
Sbjct: 69 VFDEIPKPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVRGVEPDEFSVTTALTACAQVGA 128
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H V IES + +G ALV MYA+ G +
Sbjct: 129 LAQGKWIHEFVKKK---------------------RWIESDVFVGTALVDMYAKCGCIEM 167
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCS 296
A FE +SRRN+ SW LI ++ G +K + +L+ C+
Sbjct: 168 AVEVFEKLSRRNVFSWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACA 227
Query: 297 HSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H G + +G+ M A++ T ++ C+VDL+ +G L +A LI++MP KP +W
Sbjct: 228 HGGFLQEGRAMLGNMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVW 287
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
GALL C +H N +L EL ++NLL L+
Sbjct: 288 GALLNGCRTHKNVELGELAVKNLLDLE 314
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 40 VFCDIGPRYLFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFV-SD 86
V C +G L + M+ GV C VG + +H VKK ++ SD
Sbjct: 89 VRCGLGSEGLEVFREMLVRGVEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESD 148
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
+ + +DM+ KCG ++ A F ++ ++F W
Sbjct: 149 VFVGTALVDMYAKCGCIEMAVEVFEKLSRRNVFSW 183
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/439 (25%), Positives = 184/439 (41%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLI-----STCLISSIFLQL------IDDDYRVFCDIGPRYL 49
+K C K L + HAQ++ + L S+I + + +D +VF ++ R L
Sbjct: 71 LKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSL 130
Query: 50 FTYNTMI-----NG-------------------------GVRCLCVGNIKMA--LHLHGL 77
++NTMI NG V C C ++ LH
Sbjct: 131 VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAF 190
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K + +A + +D++ KCG + A + +F+ MP+
Sbjct: 191 AIKAAMDLNVFVATALLDVYAKCGLMKDA----------------------VCVFESMPD 228
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R +V+W++M + ++ + L F + W G L ++ A A + + G +
Sbjct: 229 RSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQM 288
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
++ + ++FV S LIDMY KCG GIE S ++ F
Sbjct: 289 NALLSKSGFCSNIFVASSLIDMYAKCG--GIEESYKV--------------------FRD 326
Query: 258 MSRRNMISWMVLISAFSQ-AGVLEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
+ +RN++ W +IS S+ A LE F FVS+LS C H G V KG
Sbjct: 327 VEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKG 386
Query: 305 KHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+ YF M K + ++ CMVD L +G + EA LI ++P + +WG+LL +C
Sbjct: 387 QKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCR 446
Query: 361 SHYNTKLAELVMRNLLQLD 379
+H N +LAE+ + L ++
Sbjct: 447 THGNLELAEVAAKKLFDIE 465
>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Brachypodium distachyon]
Length = 652
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 148/319 (46%), Gaps = 39/319 (12%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII---RLLIM------FQKMPERD 139
+ S I ++ CG V A F M+ + CW ++ R M F + P +D
Sbjct: 183 VENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVKD 242
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+V+W M++ ++ + L F + G G+ + A SA A + ++ +
Sbjct: 243 MVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQE 302
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGC--------NGI-ESSIQIGKALVTMYAEGGSTQK 250
++V VGSGL+DMY KCG +G+ E ++ ++V A G ++
Sbjct: 303 IAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRARE 362
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTA 310
A F+ M RR ++ P F+ +L+ CSH+G VT G++YF
Sbjct: 363 AIALFKDMVRRADVA----------------PN-HVTFIGVLTACSHAGMVTDGRYYFAQ 405
Query: 311 MAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366
M ++ CMVDLLG +GL+ EA L+ M +P +WGALLGAC H T+
Sbjct: 406 MKDKYGILPSADHYTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTE 465
Query: 367 LAELVMRNLLQLDVKVFGS 385
+A++ +L +L+ + G+
Sbjct: 466 VAKVAAEHLFKLEPEGIGN 484
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 133/281 (47%), Gaps = 50/281 (17%)
Query: 122 KFGIIRLL-IMFQKMPERDLVSWNTMISILT---RHGFGFETLCTFIE--LWNHGFGLSS 175
KFG + L +FQ+M ++LV+WN+MI+ R G + T IE + + LSS
Sbjct: 241 KFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSS 300
Query: 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
+L + ++ L G +H V S D + LI MY KCG ++S+ ++
Sbjct: 301 VLLGCS-----NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCG--DLDSAWKL- 352
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------- 286
F M R+++ISW +IS ++Q G K F
Sbjct: 353 -------------------FLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMK 393
Query: 287 ----FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKK 338
FV+++ C+H+G V G YF +M K ++ C++DLLG +G L EA
Sbjct: 394 PDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVS 453
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
LI EMP KP I+G LLGAC H N LAE RNLL LD
Sbjct: 454 LIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLD 494
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 64/292 (21%)
Query: 100 CGAVDYAESAFLRMLNPS-------LFCW--KFGIIRLLIMFQKMPERDLVSWNTMISIL 150
G V A F ++ P L C+ +G+ L F KMP +D+ SWNT+IS
Sbjct: 118 AGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGF 177
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH--MEPSL 208
++G F L FS + W + V H +E +
Sbjct: 178 AQNG-----------QMQKAFDL--------FSVMPEKNGVSWSAMISGYVEHGDLEAAE 218
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
+++ G+ S+ + A++T Y + G + A+ F+ M+ +N+++W
Sbjct: 219 ELYKNVGM-------------KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNS 265
Query: 269 LISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH--SGPVTKGKHYF---TA 310
+I+ + + E F S+L GCS+ + P+ + H +
Sbjct: 266 MIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSP 325
Query: 311 MAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
++K T C ++ + G L A KL EMP K + W A++ H
Sbjct: 326 LSKDTTAC--TSLISMYCKCGDLDSAWKLFLEMPRK-DVISWNAMISGYAQH 374
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 34/132 (25%)
Query: 49 LFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
L + TMI VR C + + + +H LV K D + S I M
Sbjct: 280 LKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISM 339
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ KCG +D A WK +F +MP +D++SWN MIS +HG G
Sbjct: 340 YCKCGDLDSA--------------WK--------LFLEMPRKDVISWNAMISGYAQHGAG 377
Query: 157 FETLCTFIELWN 168
+ L F ++ N
Sbjct: 378 RKALHLFDKMRN 389
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/445 (23%), Positives = 181/445 (40%), Gaps = 104/445 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+KAC + + R+IH +I S ++ +DD +VF + R L
Sbjct: 310 LKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDL 369
Query: 50 FTYNTMING---------------GVRCLCVGNIKMAL-----------------HLHGL 77
+N +I+G G+R +G + L +H L
Sbjct: 370 ILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHAL 429
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+K F+ D + ID + KC + A IR+ F++
Sbjct: 430 AEKIGFIFDAHVVNGLIDSYWKCSCLSDA-------------------IRV---FEECSS 467
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D+++ +MI+ L++ G + F+E+ G + ++ +A AS+ E G +
Sbjct: 468 GDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQV 527
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ + D F G+ L+ Y KCG S + A+LAF
Sbjct: 528 HAHLIKRQFMSDAFAGNALVYTYAKCG----------------------SIEDAELAFSS 565
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+ R ++SW +I +Q G ++ F S+L C+H+G V +
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA 625
Query: 305 KHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
K YF +M + ++ CM+DLLG +G L +A +L++ MP + +WGALLGA
Sbjct: 626 KRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASR 685
Query: 361 SHYNTKLAELVMRNLLQLDVKVFGS 385
H + +L +L L L+ + G+
Sbjct: 686 VHKDPELGKLAAEKLFILEPEKSGT 710
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 136/333 (40%), Gaps = 101/333 (30%)
Query: 7 LKSLPIAR---KIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIG-PRYLFT 51
LK +P A+ ++HA ++T S +F+ +DD RVF + G R +
Sbjct: 110 LKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVS 169
Query: 52 YNTMING---------------------------GVRCL---CVG--NIKMALHLHGLVK 79
+N +++ G C+ C G NI +H +V
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 229
Query: 80 KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139
+ + D A + +DM+VK G VD A ++F+KMP+ D
Sbjct: 230 RMGYEKDVFTANALVDMYVKMGRVDIAS----------------------VIFEKMPDSD 267
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHG-----FGLSSMLYATAFSARASVYDLEWG 194
+VSWN +IS +G + +++ + G F LSS+L A A A +DL G
Sbjct: 268 VVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC---AGAGAFDL--G 322
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H ++ D ++G GL+DMY K + ++ ++++
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAK--NHFLDDAMKV-------------------- 360
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
F+ MS R++I W LIS S G ++ F+
Sbjct: 361 FDWMSHRDLILWNALISGCSHGGRHDEAFSIFY 393
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 121/315 (38%), Gaps = 66/315 (20%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
CV + ++ +H + F SD +A + + M+ G +D A F
Sbjct: 112 CVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF------------- 158
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+ ER+ VSWN ++S ++ + + F E+ G + ++ +
Sbjct: 159 --------DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 210
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A +++ G +H+ VV M DVF + L+DMY+K G I S I
Sbjct: 211 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVI----------- 259
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISA----------------FSQAGVLEKPRFFFF 287
FE M +++SW LIS +G++ F
Sbjct: 260 -----------FEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPN---VFM 305
Query: 288 FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMP 344
S+L C+ +G G+ H F A Y V +VD+ + L +A K+ D M
Sbjct: 306 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM- 364
Query: 345 SKPTCVIWGALLGAC 359
S ++W AL+ C
Sbjct: 365 SHRDLILWNALISGC 379
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 148/347 (42%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C + +++ L +H V K SD +A + +DM+ KCG +D A+
Sbjct: 453 FTYGSVLKA---CAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQK- 508
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ ++ + +VSWN ++S + + E F E+ +
Sbjct: 509 ---------------------LHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDM 547
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G +AT A++ +E G +H +++ E D ++ S L+DMY KCG
Sbjct: 548 GLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCG----- 602
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF--- 285
+ L FE + +R+ +SW +I ++ G+ +E R F
Sbjct: 603 -----------------DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERM 645
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
FV++L CSH G G YF M +F CMVD+LG S
Sbjct: 646 QKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKG 705
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA K I+ MP + VIW LL C + ++AEL N+L LD
Sbjct: 706 PQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLD 752
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 57/247 (23%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L K F D + + +D++ KC A ++ ++F
Sbjct: 372 QVHCLAIKSGFDVDICVNNAVLDLYGKCKA----------------------LMEAYLIF 409
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
Q M ++D VSWN +I+ L ++G +T+ F E+ G Y + A A++ LE
Sbjct: 410 QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE 469
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
+G +H +V+ D FV S ++DMY KCG +A
Sbjct: 470 YGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI----------------------IDEAQ 507
Query: 253 LAFELMSRRNMISWMVLISAFS-QAGVLEKPRFF------------FFFVSLLSGCSHSG 299
+ + + ++SW ++S FS E +FF F F ++L C++
Sbjct: 508 KLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLA 567
Query: 300 PVTKGKH 306
+ GK
Sbjct: 568 TIELGKQ 574
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 22/161 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + + +H L K D + +DM+ KC ++D A C+
Sbjct: 159 CSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDA------------LCF 206
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+G MPER+ VSW I+ ++ L FIE+ G G+S YA+A
Sbjct: 207 FYG----------MPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASA 256
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F + A++ L G LH+ + + S D VG+ ++D+Y K
Sbjct: 257 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP+ D+VSWN ++S + G E++ F+E+ G +A + +++ +
Sbjct: 105 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 164
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
L G +H+ V +DV GS L+DMY KC
Sbjct: 165 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC 197
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/439 (25%), Positives = 184/439 (41%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLI-----STCLISSIFLQL------IDDDYRVFCDIGPRYL 49
+K C K L + HAQ++ + L S+I + + +D +VF ++ R L
Sbjct: 71 LKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSL 130
Query: 50 FTYNTMI-----NG-------------------------GVRCLCVGNIKMA--LHLHGL 77
++NTMI NG V C C ++ LH
Sbjct: 131 VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAF 190
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K + +A + +D++ KCG + A + +F+ MP+
Sbjct: 191 AIKAAMDLNVFVATALLDVYAKCGLMKDA----------------------VCVFESMPD 228
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R +V+W++M + ++ + L F + W G L ++ A A + + G +
Sbjct: 229 RSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQV 288
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
++ + ++FV S LIDMY KCG GIE S ++ F
Sbjct: 289 NALLSKSGFCSNIFVASSLIDMYAKCG--GIEESYKV--------------------FRD 326
Query: 258 MSRRNMISWMVLISAFSQ-AGVLEKPRFF------------FFFVSLLSGCSHSGPVTKG 304
+ +RN++ W +IS S+ A LE F FVS+LS C H G V KG
Sbjct: 327 VEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKG 386
Query: 305 KHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+ YF M K + ++ CMVD L +G + EA LI ++P + +WG+LL +C
Sbjct: 387 QKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCR 446
Query: 361 SHYNTKLAELVMRNLLQLD 379
+H N +LAE+ + L ++
Sbjct: 447 THGNLELAEVAAKKLFDIE 465
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 136/334 (40%), Gaps = 61/334 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C+ ++ +H + K + + + IDM+ KC ++ A+ AF R+
Sbjct: 526 CSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRL-------- 577
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
RDL +W +I+ + G + L F ++ G + A
Sbjct: 578 --------------SVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
S +S+ LE G LHS V D+FVGS L+DMY KCGC
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGC---------------- 667
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
++A+ FE + RR+ I+W +I ++Q G K F F
Sbjct: 668 ------MEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTF 721
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+LS CSH G V +GK +F +M + + CMVD+LG G E + I +M
Sbjct: 722 TGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQ 781
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+IW +LGA H N L E L +L
Sbjct: 782 LSQNALIWETVLGASKMHNNLVLGEKAANKLFEL 815
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 142/331 (42%), Gaps = 64/331 (19%)
Query: 42 CDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG 101
C + L Y++M+ C ++ +A +HGL+ K D + S ++++ KC
Sbjct: 105 CWSSKKKLKYYSSMLR---ECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCR 161
Query: 102 AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
YA ++ KMP+RD+VSW +I L GF +++
Sbjct: 162 YSAYAR----------------------LVLAKMPDRDVVSWTALIQGLVAEGFANDSIY 199
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F E+ N G + AT A + L+ G +H++ + LD+FVGS L+D+Y
Sbjct: 200 LFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYA 259
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLE 280
KCG + S + IG M +N ++W VL++ ++Q G V
Sbjct: 260 KCGEIELASKMFIG----------------------MPEQNDVTWNVLLNGYAQRGDVTG 297
Query: 281 KPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVC-MVD 325
+ F F ++L GC++S + +G+ + + K Y + C +VD
Sbjct: 298 VLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVD 357
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ GL +A + + KP V+W AL+
Sbjct: 358 MYSKCGLAIDAIGVFKTI-KKPDIVVWSALI 387
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 131/308 (42%), Gaps = 61/308 (19%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
GN++ +H V K+ F +D +++ + + M++K G V
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTK---------------- 471
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+++ M +RDL+SWN +S L G L F + GF + + + +
Sbjct: 472 ------LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGS 525
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ ++D+ +G +H+ ++ + + FV + LIDMY KC MY E
Sbjct: 526 CSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKC-----------------MYLE 568
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSL 291
AD+AF +S R++ +W V+I+ ++Q EK +F F
Sbjct: 569 -----DADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
LSGCS + G+ + + K + FV +VD+ G + EA+ L + + + T
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT 683
Query: 349 CVIWGALL 356
+ W ++
Sbjct: 684 -IAWNTII 690
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 105/261 (40%), Gaps = 62/261 (23%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT T++ G C N+K +H L+ K + +E I +DM+ KCG
Sbjct: 315 FTLTTVLKG---CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLA------ 365
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
I + +F+ + + D+V W+ +I+ L + G E++ F L
Sbjct: 366 ----------------IDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRL 408
Query: 170 GFGLSSM-LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
G L + + SA + +L++G +H+ V DV V + L+ MY+K GC
Sbjct: 409 GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGC--- 465
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF- 287
+ G L +E M R++ISW +S G+ ++P F+
Sbjct: 466 ---VHDGTKL----------------YESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYH 506
Query: 288 ------------FVSLLSGCS 296
F+S+L CS
Sbjct: 507 MLEEGFIPNMYTFISILGSCS 527
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/430 (18%), Positives = 158/430 (36%), Gaps = 108/430 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL--ISSIFLQLIDDDYR---------VFCDIGPRYL 49
++ C S +SL +A+ IH ++ + S +++ L++ + V + R +
Sbjct: 119 LRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDV 178
Query: 50 FTYNTMING-------------------------------GVRC--LCVGNIKMALHLHG 76
++ +I G G++ LC+ + + +H
Sbjct: 179 VSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMA-LDLGKQMHA 237
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K + D + + +D++ KCG ++ A MF MP
Sbjct: 238 QAFKLGLLLDLFVGSALVDLYAKCGEIELASK----------------------MFIGMP 275
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E++ V+WN +++ + G L F + + T A+ +L+ G
Sbjct: 276 EQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQV 335
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+HS ++ + F+G GL+DMY KCG + + A G F+
Sbjct: 336 IHSLIIKCGYEGNEFIGCGLVDMYSKCG--------------LAIDAIG--------VFK 373
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV-------------SLLSGCSHSGPVTK 303
+ + +++ W LI+ Q G E+ F + SLLS +++G +
Sbjct: 374 TIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQY 433
Query: 304 GKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC- 359
G+ + K+ + +V + +G + + KL + M + + W A L
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDL-ISWNAYLSGLH 492
Query: 360 -CSHYNTKLA 368
C Y+ L
Sbjct: 493 DCGMYDRPLT 502
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 130/279 (46%), Gaps = 39/279 (13%)
Query: 118 LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
L+C I +F +MPER+ V+WN +I+ T + + + F + G S
Sbjct: 133 LYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERT 192
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
SA + + G +H + H L+VFVG+ LIDM
Sbjct: 193 VVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDM------------------ 234
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
YA+ G+ + + FE + +N+ +W VLIS ++ G + F
Sbjct: 235 ----YAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPD 290
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLI 340
F+ +L C H G VT+G+ F +M + ++ CMVDLLG +GLL EA +LI
Sbjct: 291 EVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELI 350
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
M +P +IW ALL AC H NTKL E +++ L++L+
Sbjct: 351 QSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELE 389
>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
Length = 1161
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 110/445 (24%), Positives = 182/445 (40%), Gaps = 108/445 (24%)
Query: 1 MKACGSLKSLPIARKIHA--QLISTCLISSIFLQLID---------DDYRVFCDIGPRYL 49
+KACG L +L +IH I ++ + L+D + +VF I R L
Sbjct: 485 LKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSL 544
Query: 50 FTYNTMINGGVR----------------------------------CLCVGNIKMALHLH 75
++N MI G V C G I +H
Sbjct: 545 ISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIH 604
Query: 76 GLVKK--FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
G + + F+ S +I S +D++VKCG + A AF
Sbjct: 605 GFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAF----------------------D 642
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
++ E+ ++SW+++I + G E + F L + S ++ A L
Sbjct: 643 QIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQ 702
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G + + V + L+ V + ++DMYLKCG +A+
Sbjct: 703 GKQMQALAVKLPSGLETSVLNSVVDMYLKCGL----------------------VDEAEK 740
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGP 300
F M +++ISW V+I+ + + G+ +K F+ ++++LS CSHSG
Sbjct: 741 CFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGM 800
Query: 301 VTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ +G+ F+ + + ++ C+VDLLG +G L EAK LID MP KP IW LL
Sbjct: 801 IKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLL 860
Query: 357 GACCSHYNTKLAELVMRNLLQLDVK 381
C H + +L + V + LL++D K
Sbjct: 861 SLCRVHGDIELGKEVGKILLRIDAK 885
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 45/247 (18%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MPER++VSW+ ++S +G +L F E+ G + ++T A +
Sbjct: 434 VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 493
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H + + + V VG+ L+DMY KC G +
Sbjct: 494 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC----------------------GRINE 531
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG----------------VLEKPRFFFFFVSLLSG 294
A+ F + R++ISW +I+ F AG + E+P F SLL
Sbjct: 532 AEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPD-EFTLTSLLKA 590
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCYFVC-----MVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CS +G + GK + + + C +VDL G L A+K D++ K T
Sbjct: 591 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEK-TM 649
Query: 350 VIWGALL 356
+ W +L+
Sbjct: 650 ISWSSLI 656
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 100/238 (42%), Gaps = 63/238 (26%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT++T + C + ++ L +HG K F + S +DM+ KCG ++ AE
Sbjct: 479 FTFSTNLKA---CGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKV 535
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF------ 163
F R+++ R L+SWN MI+ G+G + L TF
Sbjct: 536 FRRIVD----------------------RSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 573
Query: 164 -IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME---PSLDVFVGSGLIDM 219
I+ F L+S+L A S+ +Y G +H +V PS GS L+D+
Sbjct: 574 NIKERPDEFTLTSLLKAC--SSTGMIYA---GKQIHGFLVRSGFHCPSSATITGS-LVDL 627
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
Y+KCG +++ A AF+ + + MISW LI ++Q G
Sbjct: 628 YVKCG---------------YLFS-------ARKAFDQIKEKTMISWSSLILGYAQEG 663
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 148/347 (42%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C + +++ L +H V K SD +A + +DM+ KCG +D A+
Sbjct: 453 FTYGSVLKA---CAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQK- 508
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ ++ + +VSWN ++S + + E F E+ +
Sbjct: 509 ---------------------LHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDM 547
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G +AT A++ +E G +H +++ E D ++ S L+DMY KCG
Sbjct: 548 GLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCG----- 602
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF--- 285
+ L FE + +R+ +SW +I ++ G+ +E R F
Sbjct: 603 -----------------DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERM 645
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
FV++L CSH G G YF M +F CMVD+LG S
Sbjct: 646 QKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKG 705
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA K I+ MP + VIW LL C + ++AEL N+L LD
Sbjct: 706 PQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLD 752
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 57/247 (23%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L K F D + + +D++ KC A ++ ++F
Sbjct: 372 QVHCLAIKSGFDVDICVNNAVLDLYGKCKA----------------------LMEAYLIF 409
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
Q M ++D VSWN +I+ L ++G +T+ F E+ G Y + A A++ LE
Sbjct: 410 QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE 469
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
+G +H +V+ D FV S ++DMY KCG +A
Sbjct: 470 YGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI----------------------IDEAQ 507
Query: 253 LAFELMSRRNMISWMVLISAFS-QAGVLEKPRFF------------FFFVSLLSGCSHSG 299
+ + + ++SW ++S FS E +FF F F ++L C++
Sbjct: 508 KLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLA 567
Query: 300 PVTKGKH 306
+ GK
Sbjct: 568 TIELGKQ 574
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 22/161 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + + +H L K D + +DM+ KC ++D A C+
Sbjct: 159 CSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDA------------LCF 206
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+G MPER+ VSW I+ ++ L FIE+ G G+S YA+A
Sbjct: 207 FYG----------MPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASA 256
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F + A++ L G LH+ + + S D VG+ ++D+Y K
Sbjct: 257 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP+ D+VSWN ++S + G E++ F+E+ G +A + +++ +
Sbjct: 105 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 164
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
L G +H+ V +DV GS L+DMY KC
Sbjct: 165 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC 197
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 123/272 (45%), Gaps = 39/272 (14%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ M ERDLV+WN+MI+ +G E L F E+ G + SA A +
Sbjct: 175 VFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGA 234
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H ++ + S + V + L+D+Y KCG + ++
Sbjct: 235 LELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCG----------------------AIRE 272
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH 297
A F MS RN +SW LI + G E+ F FV +L CSH
Sbjct: 273 AQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSH 332
Query: 298 SGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + +G YF M + ++ CMVDLL +GL+ +A + I MP +P VIW
Sbjct: 333 CGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWR 392
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
LLGAC H + L E+ +LL L+ K G
Sbjct: 393 TLLGACTIHGHLGLGEIARSHLLNLEPKHSGD 424
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 20/166 (12%)
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
SL+V G + + ++ NG ES + + +L+ +YA G T+ A FELM R++++W
Sbjct: 131 SLNVREGEAIHSVTIR---NGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAW 187
Query: 267 MVLISAFSQAGVLEKPRFF-------------FFFVSLLSGCSHSGPVTKGK--HYFTAM 311
+I+ F+ G + F VSLLS + G + G+ H +
Sbjct: 188 NSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK 247
Query: 312 AKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ + ++DL G + EA+++ EM S+ V W +L+
Sbjct: 248 VGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEM-SERNAVSWTSLI 292
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 125/269 (46%), Gaps = 46/269 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER LVSWN+MI L R G L F E+ F + SA A +
Sbjct: 185 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGS 243
Query: 191 LEWGPHLHS---RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
L G H+ R ++ ++DV V + LI+MY KCG S
Sbjct: 244 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG----------------------S 281
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------FFVSLL 292
+ A+ F+ M +R++ SW +I F+ G E+ FF FV LL
Sbjct: 282 LRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLL 341
Query: 293 SGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
C+H G V KG+ YF M + ++ C+VDL+ +G + EA ++ MP KP
Sbjct: 342 IACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPD 401
Query: 349 CVIWGALLGACCSH-YNTKLAELVMRNLL 376
VIW +LL ACC + +L+E + RN++
Sbjct: 402 AVIWRSLLDACCKKGASVELSEEIARNII 430
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 33/191 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC + +++H Q++ +++ +D +VF ++ R L
Sbjct: 135 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 194
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA------- 102
++N+MI+ VR G AL L +++ F D +S + G+
Sbjct: 195 VSWNSMIDALVR---FGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWA 250
Query: 103 ---------VDYAESAFLRMLNPSLFCWKFGIIRLL-IMFQKMPERDLVSWNTMISILTR 152
VD A ++ ++C K G +R+ +FQ M +RDL SWN MI
Sbjct: 251 HAFLLRKCDVDVAMDVLVKNSLIEMYC-KCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 309
Query: 153 HGFGFETLCTF 163
HG E + F
Sbjct: 310 HGRAEEAMNFF 320
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 141/329 (42%), Gaps = 63/329 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH K SD + S ID ++K G +D +F
Sbjct: 201 LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRR----------------------VFD 238
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+M RDLV WN++I+ + G G + F+ + + GF + + A + LE
Sbjct: 239 EMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEA 298
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H+ V+ E D+ + + L+DMY KCG S + A+
Sbjct: 299 GRQVHAHVLKYE--RDLILHNALLDMYCKCG----------------------SLEDAEA 334
Query: 254 AFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSGP 300
F M +R++ISW +IS +Q G E R F V +L CSH+G
Sbjct: 335 LFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGL 394
Query: 301 VTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V G +YF +M K + CMVDLLG +G L EA + I +M +P VIW LL
Sbjct: 395 VEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLL 454
Query: 357 GACCSHYNTKLAELVMRNLLQLDVKVFGS 385
GAC H + LA R +L+L+ G+
Sbjct: 455 GACRMHKSGNLAAYAAREILKLEPDDQGA 483
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 107/264 (40%), Gaps = 44/264 (16%)
Query: 122 KFGIIR-LLIMFQKMPERDLVSWNTMISILTR-HGFGFETLCTFIELWNHGFGLSSMLYA 179
KFG++ L +F +MPER++V+W T+++ L G E L + +W G ++ ++
Sbjct: 127 KFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFS 186
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ A + L LH+ V + DVFV S LID Y+K G
Sbjct: 187 SVLGACGTPGVLA---ALHASTVKVGLDSDVFVRSSLIDAYMKLG--------------- 228
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
+GG F+ M R+++ W +I+ F+Q+G F
Sbjct: 229 --DLDGGRR-----VFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQG 281
Query: 288 -FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPS 345
S+L C+ + G+ + K+ ++D+ G L +A+ L MP
Sbjct: 282 TLTSVLRACTGMVMLEAGRQVHAHVLKYERDLILHNALLDMYCKCGSLEDAEALFHRMPQ 341
Query: 346 KPTCVIWGALLGACCSHYNTKLAE 369
+ + W ++ N K AE
Sbjct: 342 R-DVISWSTMISGLAQ--NGKSAE 362
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 18/163 (11%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA-GVLEKP-RF 284
G I + +LV+MYA+ G A F+ M RN+++W +++A + A G E+ RF
Sbjct: 110 GAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRF 169
Query: 285 F------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSG 331
+ F S+L C G V H T + ++D G
Sbjct: 170 LVAMWRDGVAPNAYTFSSVLGACGTPG-VLAALHASTVKVGLDSDVFVRSSLIDAYMKLG 228
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALL-GACCSHYNTKLAELVMR 373
L +++ DEM ++ V+W +++ G S EL MR
Sbjct: 229 DLDGGRRVFDEMVTR-DLVVWNSIIAGFAQSGDGVGAIELFMR 270
>gi|22331393|ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g28660
gi|9294280|dbj|BAB02182.1| unnamed protein product [Arabidopsis thaliana]
gi|20259531|gb|AAM13885.1| unknown protein [Arabidopsis thaliana]
gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis thaliana]
gi|332643950|gb|AEE77471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 166/370 (44%), Gaps = 71/370 (19%)
Query: 30 FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLH-GLVKKFYFVSDES 88
FL ++ ++ DI P YL T++ +I V CL + +H +VK F+SD
Sbjct: 101 FLLMVKEEEE---DITPSYL-TFHFLI---VACLKACFFSVGKQIHCWVVKNGVFLSDG- 152
Query: 89 IAKSSIDMHVKCGAVD-YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
HV+ G + Y E L F ++ F ++P+ D+V W+ ++
Sbjct: 153 --------HVQTGVLRIYVEDKLL-----------FDARKV---FDEIPQPDVVKWDVLM 190
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ R G G E L F E+ G TA +A A V L G +H
Sbjct: 191 NGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHE-------- 242
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
FV IES + +G ALV MYA+ G + A FE ++RRN+ SW
Sbjct: 243 ---FVKKK----------RWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWA 289
Query: 268 VLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFTAM-A 312
LI ++ G +K + +L+ C+H G + +G+ M A
Sbjct: 290 ALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEA 349
Query: 313 KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
++ T ++ C+VDL+ +G L +A LI++MP KP +WGALL C +H N +L E
Sbjct: 350 RYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGE 409
Query: 370 LVMRNLLQLD 379
L ++NLL L+
Sbjct: 410 LAVQNLLDLE 419
>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 147/330 (44%), Gaps = 61/330 (18%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
N K + +H LV K F+ D S+ I + +C ++D ++
Sbjct: 187 NNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKR----------------- 229
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+F ++ + +LV NTMI+ R G+ + L + +W+ + S ++ A
Sbjct: 230 -----VFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKAC 284
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+++ D++ G +HS V+ D FV S +ID+Y KCG G
Sbjct: 285 SAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIG------------------ 326
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
+A+ AF S ++ +W ++ ++ G ++ F ++ +L
Sbjct: 327 ----QAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVL 382
Query: 293 SGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
S C H G V + +HY +M + + ++ CM+DLLG GLL +AKK ID MP +P
Sbjct: 383 SSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPD 442
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQL 378
IW LL AC H + +L + R LL++
Sbjct: 443 VHIWQILLSACNIHGHVELGRVAARKLLEI 472
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 33/133 (24%)
Query: 23 TCLISSI-FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVR-------------------- 61
+CLI++ +D+ RVF +I L NTMI VR
Sbjct: 212 SCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRK 271
Query: 62 ------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
C + ++++ +H LV K F D + S ID++ KCG++ AE A
Sbjct: 272 VDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKA 331
Query: 110 FLRMLNPSLFCWK 122
F SL W
Sbjct: 332 FRSSSMNSLAAWN 344
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 91/235 (38%), Gaps = 50/235 (21%)
Query: 43 DIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
D+ L +MI GGV+ L G + L K + S++ + + M+ KCG
Sbjct: 69 DVNEYTLINVLSMI-GGVKFLNAGK-----QIQALCHKTGYFQVVSVSNALVSMYGKCGQ 122
Query: 103 VDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
+ A F M+ RD VSWN++IS + +GF + L
Sbjct: 123 ICDACRVFYNMII----------------------RDSVSWNSLISACSENGFVNQALEV 160
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F ++ + A+ A ++ + + +HS VV DV + S LI Y +
Sbjct: 161 FYQMRELSLQPTIHTLASILEAVSNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGR 220
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
CN ++ S ++ F + + N++ +I+ F +AG
Sbjct: 221 --CNSMDESKRV--------------------FAEIDKVNLVHLNTMITTFVRAG 253
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 130/279 (46%), Gaps = 39/279 (13%)
Query: 118 LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
L+C I +F +MPER+ V+WN +I+ T + + + F + G S
Sbjct: 133 LYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERT 192
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
SA + + G +H + H L+VFVG+ LIDM
Sbjct: 193 VVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDM------------------ 234
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----------- 286
YA+ G+ + + FE + +N+ +W VLIS ++ G + F
Sbjct: 235 ----YAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPD 290
Query: 287 --FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLI 340
F+ +L C H G VT+G+ F +M + ++ CMVDLLG +GLL EA +LI
Sbjct: 291 EVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELI 350
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
M +P +IW ALL AC H NTKL E +++ L++L+
Sbjct: 351 QSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELE 389
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 136/334 (40%), Gaps = 61/334 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C+ ++ +H + K + + + IDM+ KC ++ A+ AF R+
Sbjct: 526 CSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRL-------- 577
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
RDL +W +I+ + G + L F ++ G + A
Sbjct: 578 --------------SVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
S +S+ LE G LHS V D+FVGS L+DMY KCGC
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGC---------------- 667
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
++A+ FE + RR+ I+W +I ++Q G K F F
Sbjct: 668 ------MEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTF 721
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+LS CSH G V +GK +F +M + + CMVD+LG G E + I +M
Sbjct: 722 TGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQ 781
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+IW +LGA H N L E L +L
Sbjct: 782 LSQNALIWETVLGASKMHNNLVLGEKAANKLFEL 815
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 142/331 (42%), Gaps = 64/331 (19%)
Query: 42 CDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG 101
C + L Y++M+ C ++ +A +HGL+ K D + S ++++ KC
Sbjct: 105 CWSSKKKLKYYSSMLR---ECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCR 161
Query: 102 AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161
YA ++ KMP+RD+VSW +I L GF +++
Sbjct: 162 YSAYAR----------------------LVLAKMPDRDVVSWTALIQGLVAEGFANDSIY 199
Query: 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221
F E+ N G + AT A + L+ G +H++ + LD+FVGS L+D+Y
Sbjct: 200 LFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYA 259
Query: 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLE 280
KCG + S + IG M +N ++W VL++ ++Q G V
Sbjct: 260 KCGEIELASKMFIG----------------------MPEQNDVTWNVLLNGYAQRGDVTG 297
Query: 281 KPRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVC-MVD 325
+ F F ++L GC++S + +G+ + + K Y + C +VD
Sbjct: 298 VLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVD 357
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ GL +A + + KP V+W AL+
Sbjct: 358 MYSKCGLAIDAIGVFKTI-KKPDIVVWSALI 387
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 131/308 (42%), Gaps = 61/308 (19%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
GN++ +H V K+ F +D +++ + + M++K G V
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTK---------------- 471
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+++ M +RDL+SWN +S L G L F + GF + + + +
Sbjct: 472 ------LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGS 525
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+ ++D+ +G +H+ ++ + + FV + LIDMY KC MY E
Sbjct: 526 CSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKC-----------------MYLE 568
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSL 291
AD+AF +S R++ +W V+I+ ++Q EK +F F
Sbjct: 569 -----DADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTC-YFV--CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
LSGCS + G+ + + K + FV +VD+ G + EA+ L + + + T
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT 683
Query: 349 CVIWGALL 356
+ W ++
Sbjct: 684 -IAWNTII 690
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 105/261 (40%), Gaps = 62/261 (23%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT T++ G C N+K +H L+ K + +E I +DM+ KCG
Sbjct: 315 FTLTTVLKG---CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLA------ 365
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
I + +F+ + + D+V W+ +I+ L + G E++ F L
Sbjct: 366 ----------------IDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRL 408
Query: 170 GFGLSSM-LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
G L + + SA + +L++G +H+ V DV V + L+ MY+K GC
Sbjct: 409 GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGC--- 465
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF- 287
+ G L +E M R++ISW +S G+ ++P F+
Sbjct: 466 ---VHDGTKL----------------YESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYH 506
Query: 288 ------------FVSLLSGCS 296
F+S+L CS
Sbjct: 507 MLEEGFIPNMYTFISILGSCS 527
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/430 (18%), Positives = 158/430 (36%), Gaps = 108/430 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL--ISSIFLQLIDDDYR---------VFCDIGPRYL 49
++ C S +SL +A+ IH ++ + S +++ L++ + V + R +
Sbjct: 119 LRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDV 178
Query: 50 FTYNTMING-------------------------------GVRC--LCVGNIKMALHLHG 76
++ +I G G++ LC+ + + +H
Sbjct: 179 VSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMA-LDLGKQMHA 237
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K + D + + +D++ KCG ++ A MF MP
Sbjct: 238 QAFKLGLLLDLFVGSALVDLYAKCGEIELASK----------------------MFIGMP 275
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E++ V+WN +++ + G L F + + T A+ +L+ G
Sbjct: 276 EQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQV 335
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+HS ++ + F+G GL+DMY KCG + + A G F+
Sbjct: 336 IHSLIIKCGYEGNEFIGCGLVDMYSKCG--------------LAIDAIG--------VFK 373
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV-------------SLLSGCSHSGPVTK 303
+ + +++ W LI+ Q G E+ F + SLLS +++G +
Sbjct: 374 TIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQY 433
Query: 304 GKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC- 359
G+ + K+ + +V + +G + + KL + M + + W A L
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDL-ISWNAYLSGLH 492
Query: 360 -CSHYNTKLA 368
C Y+ L
Sbjct: 493 DCGMYDRPLT 502
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 154/323 (47%), Gaps = 58/323 (17%)
Query: 94 IDMHVKCGAVDYAESAF-------LRMLNP-----SLFCWKFGIIRLLIMFQKMPERDLV 141
+DMH KCG ++ A F R P S + + +F KMP+RD V
Sbjct: 238 LDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTV 297
Query: 142 SWNTMISILTRHGFGFETLCTFIELWN--HGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
SWN+MI+ T++G F+ + F E+ + + + FSA + +L G S
Sbjct: 298 SWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVS 357
Query: 200 --RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
+V H++ S+ V+ + LI+MY +C GS Q A L F+
Sbjct: 358 ILKVNHIQISISVY--NSLINMYSRC----------------------GSMQDAVLIFQE 393
Query: 258 MSRRNMISWMVLISAFSQAGV---------------LEKPRFFFFFVSLLSGCSHSGPVT 302
M+ R+++S+ LIS F++ G +E R ++++L+ CSH+G +
Sbjct: 394 MATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDR--ITYIAILTACSHAGLLD 451
Query: 303 KGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+G+ F ++ KF ++ CM+D+LG +G L EA KLI MP +P I+G+LL A H
Sbjct: 452 EGQRLFESI-KFPDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIH 510
Query: 363 YNTKLAELVMRNLLQLDVKVFGS 385
+L EL L +++ G+
Sbjct: 511 KQVELGELAAAKLFKVEPHNSGN 533
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 150/369 (40%), Gaps = 84/369 (22%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM-- 96
++F ++ R + +N MI+G +C GN + A L F+ + D+ I+++ I
Sbjct: 83 KLFDEMPDRTVADWNVMISGYWKC---GNEEEASTL------FHVMGDQEISRNVITWTT 133
Query: 97 ----HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR 152
H K G + A + F KMPER +VSWN M+S +
Sbjct: 134 MITGHAKKGNLKTAR----------------------MYFDKMPERSVVSWNAMLSGYAQ 171
Query: 153 HGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVH-------M 204
G ET+ F ++ + G +AT S+ +S+ D P L +V
Sbjct: 172 GGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGD----PCLSESIVRKLDDKVGF 227
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSI--QIG----------KALVTMYAEGGSTQKAD 252
P + FV + L+DM+ KCG I Q+G A+++ YA G A
Sbjct: 228 RP--NYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAK 285
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------FFVSLLSGCSH 297
F+ M +R+ +SW +I+ ++Q G K F VS+ S C H
Sbjct: 286 HLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGH 345
Query: 298 SGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + G ++ ++ K + + ++++ G + +A + EM ++ V +
Sbjct: 346 LGELGLG-NWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATR-DLVSYN 403
Query: 354 ALLGACCSH 362
L+ H
Sbjct: 404 TLISGFAEH 412
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 21/174 (12%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+G + + ++ +YA+ G + A F+ M R + W V+IS + + G E+
Sbjct: 56 SGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTL 115
Query: 286 FF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGL 332
F + ++++G + G + + YF M + + + M+ G
Sbjct: 116 FHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWN-AMLSGYAQGGA 174
Query: 333 LGEAKKLIDEMPS----KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
E +L ++M S +P W ++ +C S + L+E ++R +LD KV
Sbjct: 175 PEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVR---KLDDKV 225
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 26/137 (18%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
S+ S I+M+ +CG++ A +++FQ+M RDLVS+NT+I
Sbjct: 369 SVYNSLINMYSRCGSMQDA----------------------VLIFQEMATRDLVSYNTLI 406
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
S HG G E++ ++ G + Y +A + L+ G L + P
Sbjct: 407 SGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKF--PD 464
Query: 208 LDVFVGSGLIDMYLKCG 224
+D + + +IDM + G
Sbjct: 465 VDHY--ACMIDMLGRAG 479
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 148/347 (42%), Gaps = 64/347 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C + +++ L +H V K SD +A + +DM+ KCG +D A+
Sbjct: 495 FTYGSVLKA---CAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQK- 550
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ ++ + +VSWN ++S + + E F E+ +
Sbjct: 551 ---------------------LHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDM 589
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
G +AT A++ +E G +H +++ E D ++ S L+DMY KCG
Sbjct: 590 GLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCG----- 644
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF--- 285
+ L FE + +R+ +SW +I ++ G+ +E R F
Sbjct: 645 -----------------DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERM 687
Query: 286 ---------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGL 332
FV++L CSH G G YF M +F CMVD+LG S
Sbjct: 688 QKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKG 747
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA K I+ MP + VIW LL C + ++AEL N+L LD
Sbjct: 748 PQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLD 794
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 57/247 (23%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L K F D + + +D++ KC A ++ ++F
Sbjct: 414 QVHCLAIKSGFDVDICVNNAVLDLYGKCKA----------------------LMEAYLIF 451
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
Q M ++D VSWN +I+ L ++G +T+ F E+ G Y + A A++ LE
Sbjct: 452 QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE 511
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
+G +H +V+ D FV S ++DMY KCG +A
Sbjct: 512 YGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI----------------------IDEAQ 549
Query: 253 LAFELMSRRNMISWMVLISAFS-QAGVLEKPRFF------------FFFVSLLSGCSHSG 299
+ + + ++SW ++S FS E +FF F F ++L C++
Sbjct: 550 KLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLA 609
Query: 300 PVTKGKH 306
+ GK
Sbjct: 610 TIELGKQ 616
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + + +H L K D + +DM+ KC ++D A
Sbjct: 201 CSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDA--------------- 245
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L F MPER+ VSW I+ ++ L FIE+ G G+S YA+A
Sbjct: 246 -------LCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASA 298
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F + A++ L G LH+ + + S D VG+ ++D+Y K
Sbjct: 299 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK 339
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MP+ D+VSWN ++S + G E++ F+E+ G +A + +++ +
Sbjct: 147 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 206
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
L G +H+ V +DV GS L+DMY KC
Sbjct: 207 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC 239
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 145/322 (45%), Gaps = 42/322 (13%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRML-NPS-------LFCWKF-- 123
LHG K D +A + + M+ + G A + F ML +P L C+
Sbjct: 408 LHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMG 467
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+ +F +P +D V WN MI T+HG E L F + G + S
Sbjct: 468 ALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLS 527
Query: 184 ARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDMYLKCGC--------NGI-ESSIQ 233
A A + +E G LHS V + L V VG+ LIDMY KCG +GI + I
Sbjct: 528 AVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIV 587
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLS 293
+ A++ YA G ++KA L + SR + W I+ F+ LL+
Sbjct: 588 VWNAMINGYAMHGDSRKA-LEMFVQSREQGL-WPTDIT----------------FIGLLN 629
Query: 294 GCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CSHSG V +G+ +F +M + ++ CMVDLLG +GL+ EA L+ M P
Sbjct: 630 ACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDA 689
Query: 350 VIWGALLGACCSHYNTKLAELV 371
V+W +LL AC H N L + +
Sbjct: 690 VMWVSLLAACRLHKNMSLGQQI 711
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 31/226 (13%)
Query: 173 LSSMLYATAFSARASV---YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI- 228
L+ L TA + AS+ L G LH + + D +V + L+ MY + G
Sbjct: 381 LAQGLLPTAHTLSASLPACRGLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAA 440
Query: 229 ---------ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
+ + A++T YA+ G+ A F+ + ++ + W +I ++Q G
Sbjct: 441 RALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRP 500
Query: 280 -EKPRFF------------FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFV--C 322
E R F V +LS + G V GK H + ++ V
Sbjct: 501 NEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTA 560
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
++D+ G LG+A + + K V+W A++ H +++ A
Sbjct: 561 LIDMYCKCGSLGDAVDVFHGIGDK-DIVVWNAMINGYAMHGDSRKA 605
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 185/417 (44%), Gaps = 64/417 (15%)
Query: 1 MKACGSLKSLPIARKIHAQLI-----------STCLISSIFLQLIDDDYRVFCDI-GPRY 48
+K C ++K + A+++H Q+I + +++ IDD +++FC + G +
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKK---------FYFVSDESIAKSSIDMHVK 99
+ ++ +I+G V+ G A++L +++ + + + A S +H
Sbjct: 361 VVSWTAIISGYVQN---GRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHAL 417
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
+Y S + + +F+ + E+D+V+W+ M+S + G
Sbjct: 418 VVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGA 477
Query: 160 LCTFIELWNHGFGLSSMLYATAFSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
+ F++L G + +++ +A A +E G HS +
Sbjct: 478 VKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIK--------------- 522
Query: 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
+G +++ + ALVTMYA+ G+ + A+ F+ R+++SW +IS ++Q G
Sbjct: 523 -------SGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGC 575
Query: 279 LEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFV 321
+K F F+ ++S C+H+G V +G+ YF M K + ++
Sbjct: 576 GKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYS 635
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
CMVDL +G+L +A LI++MP IW LL AC H N +L EL L+ L
Sbjct: 636 CMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISL 692
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 87/429 (20%), Positives = 162/429 (37%), Gaps = 112/429 (26%)
Query: 15 KIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFTYNTMING----- 58
++H +I + L S+IF+ ++ D VF + R ++N+MI G
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG 273
Query: 59 ---------------GVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAK 91
GV+ C + + A LH V K D +I
Sbjct: 274 LDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKT 333
Query: 92 SSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILT 151
+ + + KC +D AF LFC G+ +++VSW +IS
Sbjct: 334 ALMVAYSKCSEID---DAF------KLFCMMHGV------------QNVVSWTAIISGYV 372
Query: 152 RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211
++G + F ++ G + Y+T +A A+V +H+ VV
Sbjct: 373 QNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----SQIHALVVK-------- 420
Query: 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271
E+S +G AL Y++ G +A FEL+ +++++W ++S
Sbjct: 421 --------------TNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLS 466
Query: 272 AFSQAGVLEKP-RFF------------FFFVSLLSGCSH-SGPVTKGKHYFTAMAKFTYT 317
++Q G +E + F F F S+L+ C+ + V +GK + + K ++
Sbjct: 467 GYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFS 526
Query: 318 ---CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH----YNTKLAEL 370
C +V + G + A ++ + V W +++ H + K+ E
Sbjct: 527 NALCVSSALVTMYAKRGNIESANEVFKRQVDR-DLVSWNSMISGYAQHGCGKKSLKIFEE 585
Query: 371 VMRNLLQLD 379
+ L+LD
Sbjct: 586 MRSKNLELD 594
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 39/244 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F + P++ L N ++ +R+ E L F+ L G + ++D
Sbjct: 48 LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFD 107
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G +H + + DV VG+ L+DMY+K S +
Sbjct: 108 RIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKT----------------------ESVED 145
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSH 297
+ F+ M +N++SW L++ + Q G+ E+ + F F F ++L G +
Sbjct: 146 GERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAA 205
Query: 298 SGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G V KG T + K + FV MV++ S ++ +AK + D M ++ V W +
Sbjct: 206 DGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNS 264
Query: 355 LLGA 358
++
Sbjct: 265 MIAG 268
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/317 (19%), Positives = 128/317 (40%), Gaps = 62/317 (19%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+K CG L + +++H Q I + + + + ++D RVF ++ + +
Sbjct: 99 LKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNV 158
Query: 50 FTYNTMING-GVRCLCVGNIKM--ALHLHGLVKKFY--------FVSDESIAKSSIDMH- 97
++ +++ G L +K+ + L G+ + +D ++ K + +H
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKG-VQVHT 217
Query: 98 --VKCG--AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+K G + + ++ + M + SL + +F M R+ VSWN+MI+ +
Sbjct: 218 MVIKSGLDSTIFVGNSMVNMYSKSLM-----VSDAKAVFDSMENRNAVSWNSMIAGFVTN 272
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E F + G L+ ++AT A++ ++ + LH +V+ D+ +
Sbjct: 273 GLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK 332
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM----SRRNMISWMVL 269
+ L+ Y KC + D AF+L +N++SW +
Sbjct: 333 TALMVAYSKCS-------------------------EIDDAFKLFCMMHGVQNVVSWTAI 367
Query: 270 ISAFSQAGVLEKPRFFF 286
IS + Q G ++ F
Sbjct: 368 ISGYVQNGRTDRAMNLF 384
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 45/233 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C C+ + + +H K FV D S+ S +DM++K +V+ E
Sbjct: 102 CGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGER------------- 148
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +M +++VSW ++++ ++G + L F ++ G + +A
Sbjct: 149 ---------VFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAV 199
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A+ +E G +H+ V+ +FVG+ +++MY K+L+
Sbjct: 200 LGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMY--------------SKSLM-- 243
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSG 294
A F+ M RN +SW +I+ F G L+ F F+ L G
Sbjct: 244 ------VSDAKAVFDSMENRNAVSWNSMIAGFVTNG-LDLEAFELFYRMRLEG 289
>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
Length = 547
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 173/427 (40%), Gaps = 98/427 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+KACG L RK+H ++ L S ++ LID RVF + + L
Sbjct: 136 LKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDL 195
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
N M++G HGL ++ A++ E
Sbjct: 196 VALNAMVSGYAH-------------HGLAEE---------------------ALNLVEEM 221
Query: 110 FLRMLNPSLFCW--------KFGIIRLLI-MFQKMP----ERDLVSWNTMISILTRHGFG 156
+ + P+L W + G ++ +F++M E D+VSW ++IS ++
Sbjct: 222 QVLGIKPNLVTWNTLVTGFSQIGEEEMVRELFKEMEANGIEPDVVSWTSVISGFVQNFRN 281
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E TF + N GF +S ++ A ASV + G +H + +
Sbjct: 282 EEAFDTFRRMLNAGFHPTSATISSLLPACASVGNGRCGKEIHGHSLAL------------ 329
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
G+E + + ALV MYA+ G +A + F MS RN +W +I ++
Sbjct: 330 ----------GVEKDVYVRTALVDMYAKCGYFYEAKILFWRMSERNSATWNSMIFGYANH 379
Query: 277 GVL--------------EKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTC 318
G EK F ++L+ C+H+G V G+ F M
Sbjct: 380 GYCNEAIELFHQMKDDDEKKLDHLTFTAILTACAHAGLVDLGRSLFQLMQSKYGIVPRVE 439
Query: 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
++ CMVD+ G +G L EA LI MP KP +WGALLGAC H +LAE ++L +L
Sbjct: 440 HYACMVDVFGRAGKLAEAYDLIKTMPVKPDLYVWGALLGACRKHGEIELAEEAAKHLSEL 499
Query: 379 DVKVFGS 385
+ G+
Sbjct: 500 EPGSVGN 506
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 17/172 (9%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
I+F K+P + W +I +R G+ E L F EL G S + + A +
Sbjct: 84 ILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLS 143
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-----GK------AL 238
+ G LH+ ++ D +V S LIDMY K G +E + ++ GK A+
Sbjct: 144 EKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSG--EVEKARRVFESMAGKDLVALNAM 201
Query: 239 VTMYAEGGSTQKADLAFELMS----RRNMISWMVLISAFSQAGVLEKPRFFF 286
V+ YA G ++A E M + N+++W L++ FSQ G E R F
Sbjct: 202 VSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEEMVRELF 253
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 38/193 (19%)
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
GF SS Y DL +G LH+R++ +G
Sbjct: 23 GFCSSSDGYIELIETCGRNRDLNFGRSLHARLI----------------------IDGSA 60
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--- 286
+ YA G + A + F+ + R N W+VLI A+S+ G + F
Sbjct: 61 RLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCEL 120
Query: 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-YFVC--MVDLLGLSGLL 333
S+L C H T G+ T + K + +VC ++D+ SG +
Sbjct: 121 QRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEV 180
Query: 334 GEAKKLIDEMPSK 346
+A+++ + M K
Sbjct: 181 EKARRVFESMAGK 193
>gi|414881615|tpg|DAA58746.1| TPA: hypothetical protein ZEAMMB73_747934 [Zea mays]
Length = 536
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 160/350 (45%), Gaps = 54/350 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDES--IAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
C+ V + M L LHG++ K S + + +D H K GA+ AE F M +
Sbjct: 165 CVGVQSPAMLLQLHGVIFKLLDEGSRSCFVWNALVDAHAKLGALSDAEKVFHGMRQRDIC 224
Query: 120 CWKFG---------IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL---W 167
W + R L +F+ M E+D +WN +I L + G + L FI+L +
Sbjct: 225 SWNIMMDGYSRHKLVDRALDLFRSMREKDTSTWNIIICCLGENRLGEDALRLFIDLVRSY 284
Query: 168 NHGFG---LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
H G +++ +Y T + + L +G +H+R V D F
Sbjct: 285 GHCGGDAEVNASIYTTVLHICSVLALLAFGRQVHARAVK-----DGFG------------ 327
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK--- 281
S++ + +L++MY+ G+T + E M+ R+++SW I Q G+ +
Sbjct: 328 ----RSNVFVSNSLISMYSSCGATLDLEQVLEEMAVRDVVSWNSAIQGLGQNGLGRQALA 383
Query: 282 --PRFFFF-------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLG 328
R F+++L+ CSH+G V +G YF AMAK +++ ++DLLG
Sbjct: 384 AGERALELGMYNGNTFIAILTSCSHAGMVVEGLSYFDAMAKKHGVEPTLDHYISVIDLLG 443
Query: 329 LSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+G L +A L+ +MP P V W LL +C +H NT + + ++ L+ L
Sbjct: 444 RAGRLQDAYDLLRKMPFAPDAVAWRTLLHSCLAHKNTAVGSIAVQELMAL 493
>gi|357139595|ref|XP_003571366.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Brachypodium distachyon]
Length = 674
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 148/355 (41%), Gaps = 69/355 (19%)
Query: 45 GPRYLFTYNTMINGGVRC-LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
GPR L VR +G+++ LH V K D+ + + +DM+ KCG +
Sbjct: 200 GPRVLVV-------AVRAATALGSVRAGQELHCCVAKMGACEDQYLPCALVDMYSKCGRL 252
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
D A +F MP R +V+WNTM++ + HG E + +
Sbjct: 253 DEARR----------------------VFDGMPWRSVVAWNTMLAAYSLHGCAEEAVDLY 290
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
++ G ++T + + LE +H+ ++ +D+ + L+D+Y K
Sbjct: 291 HDMCECGVVFDQFTFSTMLGVFSRLGLLEHAKQIHASLIQSGLHMDIVGNTALVDLYCKW 350
Query: 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
G + A FE M RN+ISW LI+ + G+
Sbjct: 351 G----------------------RMEDARHVFERMPSRNLISWNALIAGYGYHGMGAHAI 388
Query: 284 FFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT----CYFVCMVDL 326
F ++ +L+ C SG + KGK F MA+ T ++ C+++L
Sbjct: 389 EMFERLIAEGIAPNHVTYLGVLNACRFSGFIDKGKRIFQLMAQNPKTKPRAMHYACVIEL 448
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
G GLL EA +I + P PT +WGALL AC H N +LA L LL ++ +
Sbjct: 449 FGQQGLLDEAYSMIRKAPFTPTANMWGALLTACRIHKNIQLARLAAEQLLAMEPQ 503
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 111/288 (38%), Gaps = 42/288 (14%)
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTM 146
E+ + +++ H++ + + R+L L C R + F+ MP R V+W M
Sbjct: 114 EAGSAAAVLWHMESSGFQPDQYMWNRVLGMYLACGMLAEAREV--FEGMPARSRVTWGVM 171
Query: 147 ISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
+ L L F ELW G G + A A ++ + G LH V M
Sbjct: 172 MGGLVDGRQPRGALALFGELWGEMGVGAGPRVLVVAVRAATALGSVRAGQELHCCVAKMG 231
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
D ++ L+DMY KC G +A F+ M R++++
Sbjct: 232 ACEDQYLPCALVDMYSKC----------------------GRLDEARRVFDGMPWRSVVA 269
Query: 266 WMVLISAFSQAGVLEKPRFF-------------FFFVSLLSGCSHSGPVTKGKHYFTAMA 312
W +++A+S G E+ F F ++L S G + K ++
Sbjct: 270 WNTMLAAYSLHGCAEEAVDLYHDMCECGVVFDQFTFSTMLGVFSRLGLLEHAKQIHASLI 329
Query: 313 KFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ V +VDL G + +A+ + + MPS+ + W AL+
Sbjct: 330 QSGLHMDIVGNTALVDLYCKWGRMEDARHVFERMPSR-NLISWNALIA 376
>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 102/410 (24%), Positives = 180/410 (43%), Gaps = 59/410 (14%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRC 62
AC +P+ ++ L+ S +D+ R+F + R + ++ TMI+G R
Sbjct: 152 ACALFDGMPVRDAGSWNILLAALVRS---GTMDEARRLFERMPERNVMSWTTMISGLARS 208
Query: 63 LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
G+ A L + + VS ++ I + + +D A F+ M + W
Sbjct: 209 ---GSADEARALFDGMPERNVVSWNAM----ISGYARNLRIDEALDLFMNMPERDVASWN 261
Query: 123 FGII---------RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
I + +F +MP+R++VSW TM++ + L F + G
Sbjct: 262 IMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRP 321
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ + + A A +++ L G +H + D F+ S L+ +Y KCG I+
Sbjct: 322 NQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCG------EIR 375
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV----------LEKPR 283
+ + + F+L +++ISW +I+A++ G +++ R
Sbjct: 376 LARKV----------------FDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENR 419
Query: 284 F---FFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEA 336
+ +V LLS CSHSG V +G F MAK ++ C++DL +G L +A
Sbjct: 420 YKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDA 479
Query: 337 KKLIDEMPSKPTC-VIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
K+LI+ + KPT +W ALLG C +H N + +L RNLL+ + G+
Sbjct: 480 KRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDNAGT 529
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 111/265 (41%), Gaps = 29/265 (10%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA-FSARASVY 189
+F + P+RD+VSW M++ R G E L + +++ TA S A
Sbjct: 61 LFDRTPDRDVVSWTAMVAAYARQGQLHEASA----LLHRPDARRNVVTWTALLSGYARAR 116
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG---------KALVT 240
++ L R+ P +V + +++ Y G G ++ G L+
Sbjct: 117 RVDEARALFDRM----PERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLA 172
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSL 291
G+ +A FE M RN++SW +IS +++G ++ R F + ++
Sbjct: 173 ALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPERNVVSWNAM 232
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
+SG + + + + F M + + + + + + L +A++L DEMP K V
Sbjct: 233 ISGYARNLRIDEALDLFMNMPERDVASWNIMITGFI-QNKDLKKAQELFDEMP-KRNVVS 290
Query: 352 WGALLGACCSHYNTKLAELVMRNLL 376
W ++ C +++A V +L
Sbjct: 291 WTTMMNGCLQGNESEMALQVFNGML 315
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 21/200 (10%)
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGC----------NGIESSIQIGKALVTMYAEGGSTQ 249
R+ P DV + ++ Y + G ++ AL++ YA
Sbjct: 60 RLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHRPDARRNVVTWTALLSGYARARRVD 119
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS---------LLSGCSHSGP 300
+A F+ M RN++SW ++ A++ AG + F + LL+ SG
Sbjct: 120 EARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGT 179
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+ + + F M + + M+ L SG EA+ L D MP + V W A++
Sbjct: 180 MDEARRLFERMPERNVMSW-TTMISGLARSGSADEARALFDGMPER-NVVSWNAMISGYA 237
Query: 361 SHYNTKLAELVMRNLLQLDV 380
+ A + N+ + DV
Sbjct: 238 RNLRIDEALDLFMNMPERDV 257
>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
Length = 1096
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 144/342 (42%), Gaps = 61/342 (17%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ LH + + + +++ + I+M+ KCG++D A F+
Sbjct: 635 CSSLKDLTRGRQLHARIL-LENIHEANLSNAVINMYGKCGSLDEAMDEFV---------- 683
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
KMPERD++SWNTMI+ +HG G + L F ++ G+ Y A
Sbjct: 684 ------------KMPERDVISWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGA 731
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A SV L G +HS V P L+ G + ALVTM
Sbjct: 732 IDACGSVPSLALGKTIHSIVATAAPCLEQDPG--------------------VATALVTM 771
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
YA GS A F RN+++W LI+A +Q G + F F
Sbjct: 772 YARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTF 831
Query: 289 VSLLSGCSHSGPVTK-GKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
+L++ CS G V G+ F A+ + ++ CMV++LG +G L EA+ LI M
Sbjct: 832 STLVAACSRRGVVKDGGRRIFDALGRVYPVSASAEHYGCMVEVLGRAGKLEEAEGLIQGM 891
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
P K + IW ALL AC + + QLD F +
Sbjct: 892 PRKASGAIWMALLAACNRRGDLERGIRAANRAQQLDPGSFAA 933
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 88/404 (21%), Positives = 159/404 (39%), Gaps = 74/404 (18%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
M +C + LP A +IHA ++++ S + LQ+ +D + +F ++ R +
Sbjct: 435 MDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSV 494
Query: 50 FTYNTMINGGV-------------RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
+N+M++ R L G + ++ VS+ ++ ++
Sbjct: 495 VAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQSVSEARRYAATFEL 554
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ A + A SA+ R + F I+ + + V+WN MIS L +HG
Sbjct: 555 ELDIAARNAAVSAYARCGSLKEAKAAFDAIQW--------KNNAVTWNAMISGLAQHGES 606
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
+ L F ++ G +S+ Y + A +S+ DL G LH+R++ +E + + + +
Sbjct: 607 KQALECFWKMELEGVRANSVTYLASLEACSSLKDLTRGRQLHARIL-LENIHEANLSNAV 665
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
I+MY KC GS +A F M R++ISW +I+ ++Q
Sbjct: 666 INMYGKC----------------------GSLDEAMDEFVKMPERDVISWNTMIATYAQH 703
Query: 277 GVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGK--HYFTAMAK---FTYTC 318
G + FF ++ + C + GK H A A
Sbjct: 704 GSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPG 763
Query: 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+V + G L +AK + S+ V W L+ AC H
Sbjct: 764 VATALVTMYARCGSLHDAKSVFWRSHSR-NLVTWSNLIAACAQH 806
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 20/177 (11%)
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
L GC G+ +Q L+ MYA+ G Q A FEL+ N+ SW LI+A+++ G L
Sbjct: 53 LSSGC-GVNRYLQ--NHLIFMYAKCGCLQDAVEVFELLPCPNVFSWTALITAYAKEGHLR 109
Query: 281 KPRFF-------------FFFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVCMVD 325
+ F F F ++L+ CS +G + +GK H +A +V+
Sbjct: 110 EVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCVVLAGMETQVVGNAIVN 169
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
L G G + EAK + + +P + V W AL+ A + + K A V + L+ LD V
Sbjct: 170 LYGKCGRVHEAKAVFERLPER-NLVSWNALIAANAQNGHCKDAMQVFQ-LMDLDGSV 224
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 40/230 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F+ +P ++ SW +I+ + G E L F ++ G + +++T +A +S
Sbjct: 83 VFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGA 142
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H VV G+E+ + +G A+V +Y + G +
Sbjct: 143 LNEGKAIHDCVV----------------------LAGMETQV-VGNAIVNLYGKCGRVHE 179
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCS 296
A FE + RN++SW LI+A +Q G + F FVS++ CS
Sbjct: 180 AKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACS 239
Query: 297 HSGPVTKGKHYFTAMAKFTYTCY-FV--CMVDLLGLSGLLGEAKKLIDEM 343
+ + +GK + + + Y FV +V++ G G + A+ + ++M
Sbjct: 240 NLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKM 289
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 67/292 (22%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS---WNT 145
+ S ++M+ KCG+VD+A ++F+KM RD++S W
Sbjct: 265 VGNSLVNMYGKCGSVDHAR----------------------LVFEKMRLRDVLSVYSWTV 302
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
+I+ +G E F ++ G + + + T A ++ E + +RV H+
Sbjct: 303 IIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQCE---KIFARVKHL- 358
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE-LMSRRNMI 264
G+E +G A V+ +A+ G A FE L S RN++
Sbjct: 359 ---------------------GLELDTTLGTAFVSTFAKLGDLAAARDVFENLGSSRNVV 397
Query: 265 SWMVLISAFSQAGVLEKPRFFFF-----------FVSLLSGCSHSGPVTKGKHYFTAMAK 313
SW V+I A++Q G + + F + F++++ C + + + M
Sbjct: 398 SWTVMIWAYAQQGFI-RAAFDLYKRMDCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVA 456
Query: 314 FTYTCYF---VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+ VC+V + G G + A + + + + + V W ++L A S+
Sbjct: 457 SGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKER-SVVAWNSMLSAFASN 507
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+G ES + + LVTMY + GS A FE + R++++W ++SAF+ G E+
Sbjct: 457 SGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFASNGCYERSLKL 516
Query: 286 F-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGL 332
+ ++++L C V++ + Y V G
Sbjct: 517 YERMLLEGTKPDKITYLAVLDACQ---SVSEARRYAATFELELDIAARNAAVSAYARCGS 573
Query: 333 LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
L EAK D + K V W A++ H +K A
Sbjct: 574 LKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQA 609
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/440 (24%), Positives = 182/440 (41%), Gaps = 105/440 (23%)
Query: 1 MKACGSLKSLPIARKIHA----QLISTCLISSIFLQL------IDDDYRVFCDIGPRYLF 50
+ ACG LK L + R++H +++ ++S+ + + +D+ VF ++ R +
Sbjct: 230 LPACGYLKELEVGRRVHGLVEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVV 289
Query: 51 TYNTMING--------------------GVR------------CLCVGNIKMALHLHGLV 78
++ +MING G+R C + N+K LHG V
Sbjct: 290 SWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWV 349
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
K S+ ++ S IDM+ KC + + S F R +
Sbjct: 350 MKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRT----------------------SRK 387
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
V WN ++S + E + F ++ G +++ + A + DL+ +++
Sbjct: 388 KTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNIN 447
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
S ++ +G S+IQ+ +L+ +Y++ GS + A F +
Sbjct: 448 SYLMR----------------------SGFVSNIQVATSLIDIYSKCGSLESAHKIFNTI 485
Query: 259 --SRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303
+++ W ++I+ + G E F F S+L CSH+G V
Sbjct: 486 PVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDD 545
Query: 304 GKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G + F M K T ++ CMVDLLG +G + EA LI MP P +WGALLGAC
Sbjct: 546 GLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLGAC 605
Query: 360 CSHYNTKLAELVMRNLLQLD 379
H N +L E+ R L +L+
Sbjct: 606 VMHENVELGEVAARWLFELE 625
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/442 (20%), Positives = 162/442 (36%), Gaps = 107/442 (24%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+KAC L + R +H + + S +F+ +++ +VF + + +
Sbjct: 129 IKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSV 188
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++NTMING GV C + +++ +HGL
Sbjct: 189 VSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGL 248
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
V++ + + ++ + +DM+ KCG++D A ++F M E
Sbjct: 249 VEE-KVLGKKIVSNALVDMYAKCGSMDEAR----------------------LVFDNMVE 285
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+VSW +MI+ +G L F + G +S+ A A AS+ +L+ G L
Sbjct: 286 RDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCL 345
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H V+ +V V + LIDMY KC C G+ S+ F
Sbjct: 346 HGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSV----------------------FTR 383
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG-----------------P 300
SR+ + W L+S L F L+ G + P
Sbjct: 384 TSRKKTVPWNALLSGCVH-NKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQP 442
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV-IWGALLGAC 359
V Y + ++D+ G L A K+ + +P + +W ++
Sbjct: 443 VNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGY 502
Query: 360 CSHYNTKLAELVMRNLLQLDVK 381
H + + A + + ++Q VK
Sbjct: 503 GMHGHGETAVSLFKQMVQSGVK 524
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 39/244 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLYATAFSARASVY 189
+F ++ +R + +N MI + G FE + F+E L + + Y A + +
Sbjct: 77 LFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELL 136
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+E+G LH + + +FV + L+ MY+ C G +
Sbjct: 137 LVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNC----------------------GEVE 174
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
+A F+ M ++++SW +I+ + + G F VS+L C
Sbjct: 175 EARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACG 234
Query: 297 HSGPVTKGKHYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ + G+ + + V +VD+ G + EA+ + D M + V W +
Sbjct: 235 YLKELEVGRRVHGLVEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDV-VSWTS 293
Query: 355 LLGA 358
++
Sbjct: 294 MING 297
>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g32430, mitochondrial; Flags: Precursor
gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 155/344 (45%), Gaps = 70/344 (20%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C IK L +HGL K FVS+ S+ S I ++ K A++ A+ AF
Sbjct: 384 CNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAF------------- 430
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI----ELWNHGFGLSSMLYA 179
+ + R+++SWN MIS ++GF E L F+ E + + S+L A
Sbjct: 431 ---------EDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTFGSVLNA 481
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
AF+ SV + G H+ ++ + G+ S + AL+
Sbjct: 482 IAFAEDISV---KQGQRCHAHLLKL----------------------GLNSCPVVSSALL 516
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
MYA+ G+ +++ F MS++N W +ISA+S G E F
Sbjct: 517 DMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLV 576
Query: 288 -FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLID 341
F+S+L+ C+ G V KG F M + Y ++ CMVD+LG +G L EA++L+
Sbjct: 577 TFLSVLTACNRKGMVDKGYEIFNMMIE-VYNLEPSHEHYSCMVDMLGRAGRLKEAEELMS 635
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
E+P P + ++LG+C H N K+ V +++ ++ GS
Sbjct: 636 EVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGS 679
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 52/232 (22%)
Query: 50 FTYNTMINGGVRCLCVGN--IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
FTY+T ++ CVG+ + L L V K SD + S I M+ + G+ A
Sbjct: 175 FTYSTALS-----FCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGAR 229
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIEL 166
+F +M +D++SWN+++S L++ G FGFE + F ++
Sbjct: 230 R----------------------VFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDM 267
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
G L + + + + DL+ +H GL C
Sbjct: 268 MREGVELDHVSFTSVITTCCHETDLKLARQIH----------------GL------CIKR 305
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
G ES +++G L++ Y++ G + F MS RN++SW +IS+ V
Sbjct: 306 GYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDDAV 357
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 55/220 (25%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C G++K +HG F S ++ + + M+ K G D A
Sbjct: 88 CRGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNA----------------- 130
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFE----TLCTFIELWNHGFGLSSMLYA 179
L +F+ + + D+VSWNT++S GF+ L + + + G + Y+
Sbjct: 131 -----LCIFENLVDPDVVSWNTILS-------GFDDNQIALNFVVRMKSAGVVFDAFTYS 178
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
TA S G L S VV G+ES + +G + +
Sbjct: 179 TALSFCVGSEGFLLGLQLQSTVVK----------------------TGLESDLVVGNSFI 216
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
TMY+ GS + A F+ MS ++MISW L+S SQ G
Sbjct: 217 TMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTF 256
>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
Length = 688
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 155/344 (45%), Gaps = 70/344 (20%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C IK L +HGL K FVS+ S+ S I ++ K A++ A+ AF
Sbjct: 309 CNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAF------------- 355
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI----ELWNHGFGLSSMLYA 179
+ + R+++SWN MIS ++GF E L F+ E + + S+L A
Sbjct: 356 ---------EDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTFGSVLNA 406
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
AF+ SV + G H+ ++ + G+ S + AL+
Sbjct: 407 IAFAEDISV---KQGQRCHAHLLKL----------------------GLNSCPVVSSALL 441
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
MYA+ G+ +++ F MS++N W +ISA+S G E F
Sbjct: 442 DMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLV 501
Query: 288 -FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLID 341
F+S+L+ C+ G V KG F M + Y ++ CMVD+LG +G L EA++L+
Sbjct: 502 TFLSVLTACNRKGMVDKGYEIFNMMIE-VYNLEPSHEHYSCMVDMLGRAGRLKEAEELMS 560
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
E+P P + ++LG+C H N K+ V +++ ++ GS
Sbjct: 561 EVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGS 604
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 52/232 (22%)
Query: 50 FTYNTMINGGVRCLCVGN--IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
FTY+T ++ CVG+ + L L V K SD + S I M+ + G+ A
Sbjct: 100 FTYSTALS-----FCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGAR 154
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIEL 166
+F +M +D++SWN+++S L++ G FGFE + F ++
Sbjct: 155 R----------------------VFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDM 192
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
G L + + + + DL+ +H GL C
Sbjct: 193 MREGVELDHVSFTSVITTCCHETDLKLARQIH----------------GL------CIKR 230
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
G ES +++G L++ Y++ G + F MS RN++SW +IS+ V
Sbjct: 231 GYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDDAV 282
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 55/220 (25%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C G++K +HG F S ++ + + M+ K G D A
Sbjct: 13 CRGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNA----------------- 55
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFE----TLCTFIELWNHGFGLSSMLYA 179
L +F+ + + D+VSWNT++S GF+ L + + + G + Y+
Sbjct: 56 -----LCIFENLVDPDVVSWNTILS-------GFDDNQIALNFVVRMKSAGVVFDAFTYS 103
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
TA S G L S VV G+ES + +G + +
Sbjct: 104 TALSFCVGSEGFLLGLQLQSTVVK----------------------TGLESDLVVGNSFI 141
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
TMY+ GS + A F+ MS ++MISW L+S SQ G
Sbjct: 142 TMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTF 181
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 146/320 (45%), Gaps = 42/320 (13%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---GIIRLLIM------FQKMPERD 139
+ + I M+V V A F N ++ W G RL M F +MPE+D
Sbjct: 139 VTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKD 198
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSW TMIS + G+ E L F + G + A++ +A A++ L+ G +H
Sbjct: 199 VVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHV 258
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCG-----------CNGIESSIQIGKALVTMYAEGGST 248
+ ++ + +GLIDMY KCG ++ + A++ +A G +
Sbjct: 259 YIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKS 318
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYF 308
++A FE M I S V FV+LL+ CSH V +G++YF
Sbjct: 319 KEAIEVFEQMK----------IEKVSPNKVT--------FVALLNACSHGNRVEEGRYYF 360
Query: 309 TAMAKFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
+MA ++ C+VDLLG +G L EA+++I M P IWGALL AC H +
Sbjct: 361 ESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKD 420
Query: 365 TKLAELVMRNLLQLDVKVFG 384
++ E V + + +LD G
Sbjct: 421 AEMGERVGKIVKELDPNHLG 440
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G+E+++ + AL+ MY A F+ R+M SW +++S +++ G +++ R F
Sbjct: 132 GLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLF 191
Query: 287 ---------FFVSLLSGCSHSG 299
+ +++SGC G
Sbjct: 192 DEMPEKDVVSWTTMISGCLQVG 213
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 51/321 (15%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKF-----GIIRLLIMFQ------KMPERDLVS 142
I M+ +CG V+ A + L F G I+L M Q + +RD+V+
Sbjct: 321 ISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVA 380
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W MI +HG E + F + G +S A S +S+ L G +H V
Sbjct: 381 WTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAV 440
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS-RR 261
SG I S+ + AL+TMYA+ G+ A AF+L+ R
Sbjct: 441 K----------SGEI------------YSVSVSNALITMYAKAGNITSASRAFDLIRCER 478
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF 308
+ +SW +I A +Q G E+ F +V + S C+H+G V +G+ YF
Sbjct: 479 DTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYF 538
Query: 309 TAMAKFTYT----CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
M ++ CMVDL G +GLL EA++ I++MP +P V WG+LL AC H N
Sbjct: 539 DMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKN 598
Query: 365 TKLAELVMRNLLQLDVKVFGS 385
L ++ LL L+ + G+
Sbjct: 599 IDLGKVAAERLLLLEPENSGA 619
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
RC+ G +H + K + S++ S ++M+ KCG A+ F RM+
Sbjct: 157 AATRCMETGK-----KVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRD 211
Query: 118 LFCW--------KFGIIRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+ W + G + L + F++M ERD+V+WN+MIS + G+ L F ++
Sbjct: 212 ISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLR 271
Query: 169 HG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
A+ SA A++ L G +HS +V + V + LI MY +CG G
Sbjct: 272 DSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCG--G 329
Query: 228 IESS-------------IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
+E++ I+ AL+ Y + G +A F + R++++W +I +
Sbjct: 330 VETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYE 389
Query: 275 QAG 277
Q G
Sbjct: 390 QHG 392
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 31/191 (16%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F ++P+RD VSW TMI G + + ++ G + ++ A+ +
Sbjct: 103 FDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCM 162
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
E G +HS +V + G+ ++ + +L+ MYA+ G A
Sbjct: 163 ETGKKVHSFIVKL----------------------GLRGNVSVSNSLLNMYAKCGDPMMA 200
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLE---------KPRFFFFFVSLLSGCSHSGPVT 302
F+ M R++ SW +I+ Q G ++ R + S++SG + G
Sbjct: 201 KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDL 260
Query: 303 KGKHYFTAMAK 313
+ F+ M +
Sbjct: 261 RALDIFSKMLR 271
>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 107/430 (24%), Positives = 184/430 (42%), Gaps = 73/430 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-QLIDDDYRVFCDIGP----------RYL 49
+ AC L++L + ++IH + +S+ F+ + D YR D+G + +
Sbjct: 53 LPACARLQNLNLGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNV 112
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSI-----DMHVKCGAVD 104
+YNTMI G GN++ A L + V ++I+ +S+ D +KC +
Sbjct: 113 VSYNTMIVGYCEN---GNVEKAKEL---FDQMELVGKDTISWNSMISGYADNLLKCEDLK 166
Query: 105 YAESAFLRMLNPSLFCWKFGII---------RLLIMFQKMP----ERDLVSWNTMISILT 151
A+ AF + W I + + QKM E ++ +WN +IS
Sbjct: 167 AAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHV 226
Query: 152 RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211
+G L F E+ A A + + G +H+ + LDV
Sbjct: 227 ENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVH 286
Query: 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLIS 271
+G+ L+D MYA+ GS + A + +S N++S +++
Sbjct: 287 IGAALVD----------------------MYAKCGSIKHAMQVYNRISNPNLVSQNAMLT 324
Query: 272 AFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC 318
A++ G ++ F F+S+LS C H+G V G +F M + T
Sbjct: 325 AYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTP 384
Query: 319 ---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ C+VDLL +G L EA +L+ ++P KP V+WGALLG C N +L E+ +L
Sbjct: 385 SLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESL 444
Query: 376 LQLDVKVFGS 385
++L+ G+
Sbjct: 445 IELEPNNTGN 454
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+LVSW+ +I ++G+ E L + GF ++ A+ A A + +L G +H
Sbjct: 10 NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG---------KALVTMYAEGGSTQ 249
V + FV +GL+D+Y +C G I G ++ Y E G+ +
Sbjct: 70 GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129
Query: 250 KADLAFELMS--RRNMISWMVLISAFSQ 275
KA F+ M ++ ISW +IS ++
Sbjct: 130 KAKELFDQMELVGKDTISWNSMISGYAD 157
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/429 (24%), Positives = 184/429 (42%), Gaps = 70/429 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIF-----------LQLIDDDYRVFCDIGPRYL 49
+K G + + KIHA ++ T L + L L++ +VF ++ R
Sbjct: 115 LKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDA 174
Query: 50 FTYNTMINGGVRC---------------------------------LCVGNIKMALHLHG 76
++N MI+G VRC + N+++ +H
Sbjct: 175 VSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHD 234
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI------ 130
+ ++ + + +DM+ KCG V A F M+ ++ CW + +I
Sbjct: 235 YIANELDLT-PIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQ 293
Query: 131 ---MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F++ P RD+V W MI+ + + + F E+ G + T + A
Sbjct: 294 ARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQ 353
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ LE G +H+ + +D V + LI+MY KCGC IE S++I L M +
Sbjct: 354 LGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGC--IEKSLEIFNGLKDM----DT 407
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHY 307
T + L + L A G+ KP FV++LS C H+G V +G+
Sbjct: 408 TSWTSIICGLAMNGKTSEALELFEAMQTCGL--KPD-DITFVAVLSACGHAGLVEEGRKL 464
Query: 308 FTAMAKFTYT----CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI---WGALLGACC 360
F +M+ + ++ C +DLLG +GLL EA++L+ ++P + +I +GALL AC
Sbjct: 465 FHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACR 524
Query: 361 SHYNTKLAE 369
++ N + E
Sbjct: 525 TYGNIDMGE 533
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 100/311 (32%), Gaps = 94/311 (30%)
Query: 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGF 155
M G +YA F + +PSLF + N MI + G
Sbjct: 51 MDSSLGDFNYANRIFNHIHHPSLFIY----------------------NLMIKAFVKRGS 88
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
+ F +L G + Y + ++ G +H+ VV D +V +
Sbjct: 89 LRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNS 148
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
L+DMY + G +E Q+ FE M R+ +SW ++IS + +
Sbjct: 149 LMDMYAELGL--VEGFTQV--------------------FEEMPERDAVSWNIMISGYVR 186
Query: 276 AGVLEKPRFFF--------------FFVSLLSGCS------------------------- 296
E+ + VS LS C+
Sbjct: 187 CKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIM 246
Query: 297 ---------HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
G V+ + F AM C+ MV + G L +A+ L + PS+
Sbjct: 247 GNALLDMYCKCGCVSVAREIFDAMIVKNVNCW-TSMVTGYVICGQLDQARYLFERSPSRD 305
Query: 348 TCVIWGALLGA 358
V+W A++
Sbjct: 306 V-VLWTAMING 315
>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
Length = 640
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 146/332 (43%), Gaps = 58/332 (17%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L + ++ S+A + + + GA FG +F
Sbjct: 177 QVHALAARVGLATETSVANCLMSTYARGGA--------------------FGAALARRVF 216
Query: 133 QKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWN-HGFGLSSMLYATAFSARASVY 189
+MP RDLVSWN ++S ++G + L + + + G G+ A V
Sbjct: 217 DEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEP-------DAVTIVG 269
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L HL +R V + ++ Y++ G +++Q+ AL+ +A GS
Sbjct: 270 VLSSAAHLGARGVGFD-----------VEHYVRQRIPGFHTNVQLCNALINFHARCGSLP 318
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
+A F+ M R++++SW LI+ G + F V+L S CS
Sbjct: 319 RAQQLFDEMPRKSIVSWTALITGHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACS 378
Query: 297 HSGPVTKGKHYFTAMA---KFTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H+G +G+ YF+AM K T ++ CMVDLLG +G L EA++LI MP +W
Sbjct: 379 HAGLYDEGRRYFSAMESVYKLRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGAVW 438
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
GALLGAC H N + E +++L+ K G
Sbjct: 439 GALLGACKIHKNVDVGEEAFTRVIELEPKNVG 470
>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
Length = 752
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 149/343 (43%), Gaps = 47/343 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +H K F S ++ S IDM+ KC A+ F + + CW
Sbjct: 394 CATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCW 453
Query: 122 KFGI---------IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
I + +F+KMP R+ SWNTMIS + + L F + G
Sbjct: 454 NSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQI 513
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ ++ A A++ LE G +H+ +V + GIE +I
Sbjct: 514 PGEITLSSVLLACANLCSLEMGKMVHAEIVKL----------------------GIEDNI 551
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+G AL MYA+ G + F M +N I+W ++ ++ G E+ F
Sbjct: 552 FMGTALSDMYAKSGDLDSSRRMFYQMPEKNNITWTAMVQGLAENGFAEESILLFENMIAN 611
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEA 336
F+++L CSH G V + HYF M ++ CMVD+L +G L EA
Sbjct: 612 RIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKDKHYTCMVDVLARAGRLPEA 671
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++L+ ++PSK W +LL AC ++ N ++ E + L +L+
Sbjct: 672 EELLMKVPSKLDTSSWSSLLSACNTYRNKEIGERAAKKLHELE 714
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 153/373 (41%), Gaps = 61/373 (16%)
Query: 32 QLIDDDYRVF-----CDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF-YFVS 85
+L D + VF C + P + T+I C+ G +A+ + GL K+ F
Sbjct: 230 ELHKDAFPVFRKMLRCSVRPNVV----TLICVIKACVGAGEFDLAMGVVGLAIKWNLFEK 285
Query: 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF------------GIIRLLIMFQ 133
+ S I ++++ G A F M + W G R+L
Sbjct: 286 SIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVL---D 342
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
MPER+ VSW+T+I+ + G E L + ++ G + +++ SA A+++DL
Sbjct: 343 AMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACATLHDLRG 402
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG-CNGI--------ESSIQIGKALVTMYAE 244
G +H+ + M S +FV S LIDMY KC C E + +L++ Y+
Sbjct: 403 GTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLISGYSW 462
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF---FFFFVSLLSGCSHSGPV 301
G +A+ F+ M RN SW +IS ++ E RF +F ++L+ G +
Sbjct: 463 NGKMVEAEELFKKMPARNAASWNTMISGYA-----ENRRFGDALNYFCAMLASGQIPGEI 517
Query: 302 T---------------KGKHYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLIDEM 343
T GK + K + D+ SG L ++++ +M
Sbjct: 518 TLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQM 577
Query: 344 PSKPTCVIWGALL 356
P K + W A++
Sbjct: 578 PEKNN-ITWTAMV 589
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETL----------CTFIELWNHGFGLSSMLYAT 180
+F MPE+ +VS+ TM+ L + G + + F GF + + L+
Sbjct: 176 LFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVAFFTAMIAGF-VRNELHKD 234
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY-----LKCGCNGIESSIQIG 235
AF + P+ VV + + VG+G D+ L N E SI++
Sbjct: 235 AFPVFRKMLRCSVRPN----VVTLICVIKACVGAGEFDLAMGVVGLAIKWNLFEKSIEVH 290
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPR 283
+L+T+Y G A F+ M R+++SW L+ +++ G LE R
Sbjct: 291 NSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGAR 338
>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 934
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 152/331 (45%), Gaps = 71/331 (21%)
Query: 70 MALHLHGLVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
M +H H +V F E+ +SS I M+ +CG LN S +
Sbjct: 481 MPIHAHIVVAGFEL---ETFVQSSLITMYAQCGD-----------LNTSNY--------- 517
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F + ++ +WN ++S +G G E L I++ N G L ++ A + ++
Sbjct: 518 --IFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNL 575
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L+ G LHS ++ + +V + +DMY KCG
Sbjct: 576 TLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCG------------------------ 611
Query: 249 QKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLL 292
+ D F ++ + R+ SW +LISA ++ G ++ R F FVSLL
Sbjct: 612 -EIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLL 670
Query: 293 SGCSHSGPVTKGKHYFTAMA-KF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
S CSH G V +G YF++M+ KF T + VC++DLLG +G L EA+ I++MP PT
Sbjct: 671 SACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPT 730
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++W +LL AC H N +LA L +LD
Sbjct: 731 DLVWRSLLAACKIHGNLELARKAADRLFELD 761
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 38/242 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F M ERD +SWN++I+ +G ++L F ++ + + S +
Sbjct: 217 VFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQN 276
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L WG LH VV +G+ES++ + +L++MY++ G ++
Sbjct: 277 LRWGRGLHGMVVK----------------------SGLESNVCVCNSLLSMYSQAGKSED 314
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG----VLE---------KPRFFFFFVSLLSGCSH 297
A+ F M R++ISW ++++ G LE K + F + LS C +
Sbjct: 315 AEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSAC-Y 373
Query: 298 SGPVTKGKHYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ K H F + + +V + G G + A+++ MP + V W AL+
Sbjct: 374 NLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDE-VTWNALI 432
Query: 357 GA 358
G
Sbjct: 433 GG 434
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 122 KFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
KFG I +F KMPER+ SWN ++S R G+ + + F + HG SS + A+
Sbjct: 4 KFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAAS 63
Query: 181 AFSA-RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+A S E +H+ V+ + DVFVG+ +L+
Sbjct: 64 LVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGT----------------------SLL 101
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
Y G + D+ F+ + N++SW L+ ++ G +++
Sbjct: 102 HFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKE 143
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 23/148 (15%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL-EW 193
MP+RD V+WN +I + + F L G ++ + SA S DL +
Sbjct: 420 MPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDH 479
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H+ +V L+ FV S LI MY +C G ++
Sbjct: 480 GMPIHAHIVVAGFELETFVQSSLITMYAQC----------------------GDLNTSNY 517
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEK 281
F++++ +N +W ++SA + G E+
Sbjct: 518 IFDVLANKNSSTWNAILSANAHYGPGEE 545
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
MY++ GS + A F+ M RN SW L+S F + G +K FF
Sbjct: 1 MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60
Query: 288 FVSLLSGCSHSGPVTKGKHYFTA-MAKFTYTCYFVCMVDLL---GLSGLLGEAKKLIDEM 343
SL++ C SG +T+G A + K C LL G G + E + E+
Sbjct: 61 AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120
Query: 344 PSKPTCVIWGALL 356
+P V W +L+
Sbjct: 121 -EEPNIVSWTSLM 132
>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
Length = 893
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 158/341 (46%), Gaps = 73/341 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +++ +HG + + + + ++M+ KCGA+ A
Sbjct: 559 CSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARR------------- 605
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE-----LWNHGFGLSSM 176
+F +P++D S ++++S ++G+ + L F E LW F +SS+
Sbjct: 606 ---------VFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSV 656
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ A A + L+ G LH+ V M G+ + + +G
Sbjct: 657 IGAVAI-----LNSLDIGTQLHACVTKM----------------------GLNAEVSVGS 689
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFFFF-------- 287
+LVTMY++ GS + FE + + ++ISW +I +++Q G E + +
Sbjct: 690 SLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKP 749
Query: 288 ----FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKK 338
FV +LS CSH+G V +G + +MAK Y ++ CMVDLLG SG L EA++
Sbjct: 750 DSVTFVGVLSACSHNGMVEEGYSHLNSMAK-EYGIEPGYYHYACMVDLLGRSGRLKEAER 808
Query: 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
I+ MP +P ++WG LL AC H + +L L + +++L+
Sbjct: 809 FINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELE 849
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 44/222 (19%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+ ++ + +H + K +D S+ S M+ KCG+++ + +
Sbjct: 461 IDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYT---------------- 504
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F++MP++D VSW +MI+ + H + + F E+ M A +A
Sbjct: 505 ------VFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTA 558
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
++++ LE G +H + +V VG L++MY KCG A+V
Sbjct: 559 CSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCG------------AIVL---- 602
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
A F+++ +++ S L+S ++Q G +E F
Sbjct: 603 ------ARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLF 638
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/366 (20%), Positives = 145/366 (39%), Gaps = 73/366 (19%)
Query: 35 DDDYRVFCDI-----GPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESI 89
+D +R FC + P FTY ++++ C +G+ ++ L K F S+ +
Sbjct: 129 EDSWRNFCKMRFSGFDPNQ-FTYGSVLSA---CTALGSPLYGELVYSLALKNGFFSNGYV 184
Query: 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISI 149
ID+ K + + A L +FQ + ++V WN +IS
Sbjct: 185 RAGMIDLFAKLCSFEDA----------------------LRVFQDVLCENVVCWNAIISG 222
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
++ + L F ++ F +S +++ +A A++ +LE+G + V+ D
Sbjct: 223 AVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGED 282
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
VFVG+ +ID+Y KC +A F M RN++SW +
Sbjct: 283 VFVGTAIIDLYAKC----------------------RDMDQAVKEFLRMPIRNVVSWTTI 320
Query: 270 ISAFSQAGVLEKPRFFFFF---------------VSLLSGCSHSGPVTKGKHYFTAMAKF 314
IS F Q + F FF S+L+ C+ + + + + K
Sbjct: 321 ISGFVQKD--DSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKT 378
Query: 315 TY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
+ + ++++ G++ ++++ EM S +W ++ A +T A +
Sbjct: 379 GFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVEL 438
Query: 372 MRNLLQ 377
+ +LQ
Sbjct: 439 FQRMLQ 444
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 110/295 (37%), Gaps = 62/295 (21%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
IK A+ LH + K F D +++ + I+M+ K G VD +E F M +
Sbjct: 365 IKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMEST----------- 413
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
++L W MIS + G + F + G ++ S
Sbjct: 414 ----------KNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSI--- 460
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ L G +H ++ + D+ VGS L MY KC GS
Sbjct: 461 IDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKC----------------------GS 498
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294
+++ FE M ++ +SW +I+ FS+ E+ F + L+
Sbjct: 499 LEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTA 558
Query: 295 CSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSK 346
CS + KGK H + A+ +V++ G + A+++ D +P K
Sbjct: 559 CSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQK 613
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLR----MLNPSL--FCWKFGIIRLLIMFQK 134
F+F SD + + + K + ++A L+ M N + +C ++ L +F K
Sbjct: 47 FHFFSDYTKSGRCTLRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDK 106
Query: 135 MPERDLVSWNTMISILTRHGFGFE-TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
P +++SWN +IS ++ F FE + F ++ GF + Y + SA ++ +
Sbjct: 107 TPHPNVISWNILISGCNQN-FSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLY 165
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
G ++S + + +V +G+ID++ K
Sbjct: 166 GELVYSLALKNGFFSNGYVRAGMIDLFAK 194
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 112/425 (26%), Positives = 174/425 (40%), Gaps = 102/425 (24%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVR- 61
A G+L+ L IA K+ L + + IDD Y +F + R T++ M+ G +
Sbjct: 28 ANGTLQDLVIANKL--------LYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79
Query: 62 -------------------------------CLCVGNIKMALHLHGLVKKFYFVSDESIA 90
C ++++ +H +V K +SD +
Sbjct: 80 GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150
S +DM+ KC V+ A+ F RML+ +DLV+W MI
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLS----------------------KDLVTWTVMIGAY 177
Query: 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210
+E+L F + G + T +A A + + + +V SLDV
Sbjct: 178 ADCN-AYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDV 236
Query: 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLI 270
+G+ +IDM YA+ GS + A F+ M +N+ISW +I
Sbjct: 237 ILGTAMIDM----------------------YAKCGSVESAREVFDRMKEKNVISWSAMI 274
Query: 271 SAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAM----AK 313
+A+ G + F FVSLL CSH+G + +G +F +M A
Sbjct: 275 AAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAV 334
Query: 314 FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
++ CMVDLLG +G L EA +LI+ M + +W ALLGAC H +LAE
Sbjct: 335 RPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAAN 394
Query: 374 NLLQL 378
+LL+L
Sbjct: 395 SLLEL 399
>gi|76556518|emb|CAJ32535.1| pentatricopeptide repeat-containing protein [Hordeum vulgare subsp.
vulgare]
Length = 652
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 131/274 (47%), Gaps = 41/274 (14%)
Query: 131 MFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F +MP RDLVSW ++S + G + L + + HG ++ S+ +
Sbjct: 228 VFDEMPLATRDLVSWTAVLSAHAQGGLAVDALELYRRMRGHGVEPDALTLVGVLSSCS-- 285
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
HL +R V ++ +D Y++ G +++Q+ AL+ +A GS
Sbjct: 286 -------HLAARSVGLD-----------VDRYVRQRLPGFRANVQLCSALINFHARCGSL 327
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGC 295
+A F+ M R++++SW LI+ + G + FF V+LLS C
Sbjct: 328 PQAQQLFDEMPRKSIVSWTALITGYGMHGHGDIAINFFQRMVSQGIRPDNVSMVALLSAC 387
Query: 296 SHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
SH+G +G YF AM + TY ++ CMVDLLG +G L EA++LI MP
Sbjct: 388 SHAGKYEEGCKYFFAM-ESTYKLRPTLEHYACMVDLLGRAGRLEEARELISSMPMPADGS 446
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+WGALLGAC H N + E ++++ L+ G
Sbjct: 447 VWGALLGACKIHKNVEAGEEAFKHVIMLEPSNVG 480
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 160/340 (47%), Gaps = 58/340 (17%)
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF-------LRMLNP-----SLFCWKFG 124
L K F + + + +DMH KCG ++ A F R P S +
Sbjct: 278 LDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGD 337
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN--HGFGLSSMLYATAF 182
+ +F KMP+RD VSWN+MI+ T++G F+ + F E+ + + + F
Sbjct: 338 LPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVF 397
Query: 183 SARASVYDLEWGPHLHS--RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
SA + +L G S +V H++ S+ V+ + LI+MY +C
Sbjct: 398 SACGHLGELGLGNWAVSILKVNHIQISISVY--NSLINMYSRC----------------- 438
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV---------------LEKPRFF 285
GS Q A L F+ M+ R+++S+ LIS F++ G +E R
Sbjct: 439 -----GSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDR-- 491
Query: 286 FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
++++L+ CSH+G + +G+ F ++ KF ++ CM+D+LG +G L EA KLI MP
Sbjct: 492 ITYIAILTACSHAGLLDEGQRLFESI-KFPDVDHYACMIDMLGRAGRLEEAMKLIQSMPM 550
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+P I+G+LL A H +L EL L +++ G+
Sbjct: 551 EPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGN 590
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 150/369 (40%), Gaps = 84/369 (22%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM-- 96
++F ++ R + +N MI+G +C GN + A L F+ + D+ I+++ I
Sbjct: 140 KLFDEMPDRTVADWNVMISGYWKC---GNEEEASTL------FHVMGDQEISRNVITWTT 190
Query: 97 ----HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR 152
H K G + A + F KMPER +VSWN M+S +
Sbjct: 191 MITGHAKKGNLKTAR----------------------MYFDKMPERSVVSWNAMLSGYAQ 228
Query: 153 HGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVH-------M 204
G ET+ F ++ + G +AT S+ +S+ D P L +V
Sbjct: 229 GGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGD----PCLSESIVRKLDDKVGF 284
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSI--QIG----------KALVTMYAEGGSTQKAD 252
P + FV + L+DM+ KCG I Q+G A+++ YA G A
Sbjct: 285 RP--NYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAK 342
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------FFVSLLSGCSH 297
F+ M +R+ +SW +I+ ++Q G K F VS+ S C H
Sbjct: 343 HLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGH 402
Query: 298 SGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + G ++ ++ K + + ++++ G + +A + EM ++ V +
Sbjct: 403 LGELGLG-NWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATR-DLVSYN 460
Query: 354 ALLGACCSH 362
L+ H
Sbjct: 461 TLISGFAEH 469
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 21/174 (12%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+G + + ++ +YA+ G + A F+ M R + W V+IS + + G E+
Sbjct: 113 SGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTL 172
Query: 286 FF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGL 332
F + ++++G + G + + YF M + + + M+ G
Sbjct: 173 FHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWN-AMLSGYAQGGA 231
Query: 333 LGEAKKLIDEMPS----KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
E +L ++M S +P W ++ +C S + L+E ++R +LD KV
Sbjct: 232 PEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVR---KLDDKV 282
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 150/340 (44%), Gaps = 49/340 (14%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI-- 130
LH ++ + SD ++ S I + CG V A S F + + +FCW I +
Sbjct: 90 QLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYVKSG 149
Query: 131 -------MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAF 182
+F MP R++VSW T+I + E + F + G + +
Sbjct: 150 NLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALLSVL 209
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA + ++ G +H VV + + + +IDMY+K GC
Sbjct: 210 SACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGC----------------- 252
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFV 289
+KA FE M ++++++W +I+ F+ G+ LE F F+
Sbjct: 253 -----VRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFL 307
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
++LS CSH G G+ YF M ++ CMVDLLG +G L EA+ L+ +MP
Sbjct: 308 AILSACSHVGLTDLGRWYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPF 367
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
K IWGALL A +H + +L + + +L++L+ G+
Sbjct: 368 KANAAIWGALLAAARTHGDAELGKQALLHLIELEPHNSGN 407
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 144/333 (43%), Gaps = 63/333 (18%)
Query: 70 MALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129
M +H V K D + + +DM+ KCG +D A+
Sbjct: 119 MGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQ--------------------- 157
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
+F +MP++DLV+ MI+ G E+ F ++ GF + T +A A +
Sbjct: 158 -LFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLG 216
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ +H V SLDV +G+ +IDMY KCG I+SS +I
Sbjct: 217 AMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCG--SIDSSREI--------------- 259
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCS 296
F+ M ++N+ISW +I A+ G + F F+SLL CS
Sbjct: 260 -----FDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACS 314
Query: 297 HSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
H+G V G F+ M+ +Y ++ CMVDLLG +G L +A +LI+ M + I
Sbjct: 315 HAGLVDDGLQLFSLMS-VSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGI 373
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
W A LGAC H LAE + LL L + G
Sbjct: 374 WCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPG 406
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 108/255 (42%), Gaps = 39/255 (15%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F KM ERD VSW+ MI ++G TF EL G + A
Sbjct: 56 LLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTM 115
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G +HS V+ LD FV S L+DMY KCG I+++ Q+
Sbjct: 116 GLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGM--IDNAKQL--------------- 158
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
F+ M ++++++ V+I+ +++ G + F V++++ C+
Sbjct: 159 -----FDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACA 213
Query: 297 HSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + K + H + +++ M+D+ G + ++++ D M K + W
Sbjct: 214 KLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQK-NVISWS 272
Query: 354 ALLGACCSHYNTKLA 368
A++GA H + A
Sbjct: 273 AMIGAYGYHGQGREA 287
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 156/343 (45%), Gaps = 52/343 (15%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN---PSLFCWKF 123
++ M + +HG V K VSD+ ++ + IDM+ KC F +M + S + F
Sbjct: 265 DLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIF 324
Query: 124 GIIR------LLIMFQKMPER----DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
G+ R L +F+++ ++ ++VSW +MI+ +++G E L F E+ G
Sbjct: 325 GLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKP 384
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+S+ A ++ L G H + S DV+VGS LID
Sbjct: 385 NSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALID--------------- 429
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
MYA+ G Q + + F+ + +N++ W +I+ ++ G ++ F
Sbjct: 430 -------MYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSG 482
Query: 287 ------FFVSLLSGCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEA 336
F +LS CS SG +G +YF +M+ K+ ++ CMV LL +G L +A
Sbjct: 483 QKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQA 542
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+I MP P +WGALL +C H N L E+ L +L+
Sbjct: 543 YAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELE 585
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 91/391 (23%), Positives = 154/391 (39%), Gaps = 48/391 (12%)
Query: 40 VFCDIGPRYLFTYNTMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
F + R L N ++ V+ C + +K A +HG+ F SD + S + M++
Sbjct: 101 TFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYI 160
Query: 99 KCGAVDYAESAFLRMLNPSLFCW--------KFGII-RLLIMFQKMPER----DLVSWNT 145
KC + A F RM P + W + G + +F +M + +L+SWN
Sbjct: 161 KCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNG 220
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
MI+ G E + F+++ GF ++ A + DL G +H V+
Sbjct: 221 MIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG 280
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSI-------QIG--KALVTMYAEGGSTQKADLAFE 256
D V S LIDMY KC C S + +G A + + G + + F
Sbjct: 281 LVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFR 340
Query: 257 LMSRR----NMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSG 299
+ + N++SW +I+ SQ G +E F LL C +
Sbjct: 341 QLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIA 400
Query: 300 PVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ GK H F+ + Y ++D+ G + ++ D +P+K V W A++
Sbjct: 401 ALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK-NLVCWNAVI 459
Query: 357 GACCSHYNTKLA----ELVMRNLLQLDVKVF 383
H K A +L+ R+ + D+ F
Sbjct: 460 AGYAMHGKAKEAMEIFDLMQRSGQKPDIISF 490
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 17/172 (9%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+PE ++ S++T+I ++ L TF ++ G + + +A A A + L+
Sbjct: 74 VPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPA 133
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI-----------ESSIQIGKALVTMYA 243
+H D FV S L+ MY+K CN I E + ALV YA
Sbjct: 134 RQVHGIASVSGFDSDSFVQSSLVHMYIK--CNQIRDAHRVFDRMFEPDVVSWSALVAAYA 191
Query: 244 EGGSTQKADLAFELMS----RRNMISWMVLISAFSQAGVLEKPRFFFFFVSL 291
G +A F M + N+ISW +I+ F+ +G+ + F + L
Sbjct: 192 RQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHL 243
>gi|302784506|ref|XP_002974025.1| hypothetical protein SELMODRAFT_34488 [Selaginella moellendorffii]
gi|300158357|gb|EFJ24980.1| hypothetical protein SELMODRAFT_34488 [Selaginella moellendorffii]
Length = 294
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 139/326 (42%), Gaps = 61/326 (18%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
+H + K F D +A S I M+ CG VD A + +F
Sbjct: 4 VHAHIVKHGFDRDILVANSIIQMYGSCGCVDDARA------------------ESRALFD 45
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSSMLYATAFSARASVYDLE 192
M +R VSWN MIS + FE L NH G + A A + L+
Sbjct: 46 SMVDRSSVSWNAMISAYAQSA-QFEAALHLFRLMNHDGCRPDRSTFVNALGACCELTALQ 104
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
+G +H+++ +G+E + AL+ ++ + G+ + A
Sbjct: 105 FGRMIHAQIAE----------------------SGLERECMVATALINLHGKCGNLEGAR 142
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------FFVSLLSGCSH 297
F+LM R +ISW +I+A+SQ G + R FF FVSLL+ CSH
Sbjct: 143 AVFDLMEERTIISWTAMITAYSQNGQIVLARQFFDRMPHWCGIEVDASSTFVSLLAACSH 202
Query: 298 SGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + +G F +M F +F+C+VDLLG +G L A +L+ MP + V W
Sbjct: 203 GGMLREGVELFRSMVGDFGVEPVLEHFLCLVDLLGRAGQLDRALELVTSMPYQADAVAWV 262
Query: 354 ALLGACCSHYNTKLAELVMRNLLQLD 379
+LL AC H + L +LL++D
Sbjct: 263 SLLSACSVHADKARGALATSSLLEID 288
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 35/181 (19%)
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G +H+ +V D+ V + +I MY CGC ++ + +AL
Sbjct: 1 GRRVHAHIVKHGFDRDILVANSIIQMYGSCGC--VDDARAESRAL--------------- 43
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F+ M R+ +SW +ISA++Q+ E F FV+ L C
Sbjct: 44 -FDSMVDRSSVSWNAMISAYAQSAQFEAALHLFRLMNHDGCRPDRSTFVNALGACCELTA 102
Query: 301 VTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ G+ H A + C +++L G G L A+ + D M + T + W A++
Sbjct: 103 LQFGRMIHAQIAESGLERECMVATALINLHGKCGNLEGARAVFDLMEER-TIISWTAMIT 161
Query: 358 A 358
A
Sbjct: 162 A 162
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 143/314 (45%), Gaps = 48/314 (15%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII---------RLLIMFQKMPERDLVSWN 144
I +V+CG ++ A F RM N + W I + + +F++M R+ VSWN
Sbjct: 366 ISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWN 425
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
++IS ++ + L F+ + YA+ A A++ L G LH+ +V
Sbjct: 426 SVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRS 485
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI 264
D F G+ LI Y KCG I + QI F+ M ++++
Sbjct: 486 GHINDSFAGNALISTYAKCG--RILEAKQI--------------------FDEMVYKDIV 523
Query: 265 SWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM 311
SW LI ++ G + F FV +LS CSH+G + +G +F +M
Sbjct: 524 SWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSM 583
Query: 312 AKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
K ++ CMVDLLG +G L EA +L+ M +P +WGALLGAC H N +L
Sbjct: 584 TKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHMHKNHEL 643
Query: 368 AELVMRNLLQLDVK 381
A+L L +L+ +
Sbjct: 644 AQLAAERLSELEPR 657
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 134/339 (39%), Gaps = 66/339 (19%)
Query: 98 VKCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRLLIMFQKMPERDLVSWNTMIS 148
V+ G ++ A S F ++ +P++ W + G I +F +MPER++V+WN M+
Sbjct: 215 VRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLD 274
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
H E C +L++ +S+ + T S A L+ L ++ +
Sbjct: 275 GYV-HLSPIEEAC---KLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAA 330
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIG-----KALVTMYAEGGSTQKADLAFELMSRRNM 263
+ G + + I +++ +++ Y + G ++A L F+ M ++M
Sbjct: 331 KTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDM 390
Query: 264 ISWMVLISAFSQAGVLEKP---------RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF 314
+SW +I+ ++Q G + K R + S++SG + H+F M +
Sbjct: 391 VSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRG 450
Query: 315 T----YTCYFVCMV---------------DLLGLSGLLG-------------------EA 336
T ++ Y C+ +LL SG + EA
Sbjct: 451 TNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEA 510
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
K++ DEM K V W AL+ S+ A V R +
Sbjct: 511 KQIFDEMVYK-DIVSWNALIDGYASNGQGTEAIAVFREM 548
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 23/242 (9%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL------WNHGFGLSSMLYATAFSA 184
+ ++MP DLVSWN+ ++ LT+ G + F E+ WN L+ + +A
Sbjct: 165 LLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWN--LMLAGFVRTGDLNA 222
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
+S + P++ S V L+ + +G I E ++ ++ Y
Sbjct: 223 ASSFFAKIESPNVISWVT----LLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVH 278
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS---------LLSGC 295
++A F+ M +N ISW +IS ++AG L++ + +S L+ G
Sbjct: 279 LSPIEEACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGY 338
Query: 296 SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
+ F M C+ M+ G+L EA L MP+K V W +
Sbjct: 339 LQRNMADDARRIFDGMEVHDTVCWNT-MISGYVQCGILEEAMLLFQRMPNK-DMVSWNTM 396
Query: 356 LG 357
+
Sbjct: 397 IA 398
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------F 287
A+++ A G +A F+ M RN +SW +I+A S G + R F F
Sbjct: 53 NAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVRDEF 112
Query: 288 FVSLLSGC-SHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+++ C + G + + M T + M+ +G +A KL+ EMP+
Sbjct: 113 SWTVMVSCYARGGDLELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPA- 171
Query: 347 PTCVIWGALLG 357
P V W + L
Sbjct: 172 PDLVSWNSALA 182
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 125/269 (46%), Gaps = 46/269 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER LVSWN+MI L R G L F E+ F + SA A +
Sbjct: 208 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGS 266
Query: 191 LEWGPHLHS---RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
L G H+ R ++ ++DV V + LI+MY KCG S
Sbjct: 267 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG----------------------S 304
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------FFVSLL 292
+ A+ F+ M +R++ SW +I F+ G E+ FF FV LL
Sbjct: 305 LRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLL 364
Query: 293 SGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
C+H G V KG+ YF M + ++ C+VDL+ +G + EA ++ MP KP
Sbjct: 365 IACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPD 424
Query: 349 CVIWGALLGACCSH-YNTKLAELVMRNLL 376
VIW +LL ACC + +L+E + RN++
Sbjct: 425 AVIWRSLLDACCKKGASVELSEEIARNII 453
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 33/191 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC + +++H Q++ +++ +D +VF ++ R L
Sbjct: 158 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 217
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA------- 102
++N+MI+ VR G AL L +++ F D +S + G+
Sbjct: 218 VSWNSMIDALVR---FGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWA 273
Query: 103 ---------VDYAESAFLRMLNPSLFCWKFGIIRLL-IMFQKMPERDLVSWNTMISILTR 152
VD A ++ ++C K G +R+ +FQ M +RDL SWN MI
Sbjct: 274 HAFLLRKCDVDVAMDVLVKNSLIEMYC-KCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 332
Query: 153 HGFGFETLCTF 163
HG E + F
Sbjct: 333 HGRAEEAMNFF 343
>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 840
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 152/334 (45%), Gaps = 73/334 (21%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY +++ C N+K+ +H L K F + ++++ + +DM+ K G + A
Sbjct: 338 FTYPSVLKSLASC---KNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCA--- 391
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
L +F K+ ++D++SW ++++ +GF + L F ++
Sbjct: 392 -------------------LDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTA 432
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
L + A FSA A + +E+G +H+ + + + LI MY KCGC +E
Sbjct: 433 RVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGC--LE 490
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFV 289
+I++ F+ M RN+ISW +I ++Q G++E
Sbjct: 491 DAIRV--------------------FDSMETRNVISWTAIIVGYAQNGLVE--------- 521
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
G+ YF +M K + ++ CM+DLLG +G + EA+ L++ M
Sbjct: 522 -------------TGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDV 568
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+P IW +LL AC H N +L E +NL++L+
Sbjct: 569 EPDATIWKSLLSACRVHGNLELGERAGKNLIKLE 602
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 128/309 (41%), Gaps = 47/309 (15%)
Query: 99 KCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISI 149
K G VD A F +M + W ++ +F + P ++ ++W++++S
Sbjct: 49 KNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSG 108
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
++G E L F ++W+ G S + A +++ L G +H + ++ +
Sbjct: 109 YCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEAN 168
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
+FV +GL+DMY KC C L Y L F L R+N + W +
Sbjct: 169 IFVATGLVDMYSKCKC-----------LLEAEY----------LFFSLPDRKNYVQWTAM 207
Query: 270 ISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSGPVTKGK--HYFTAMAKF 314
++ ++Q G L+ + F F F S+L+ C+ G+ H + F
Sbjct: 208 LTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGF 267
Query: 315 TYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373
Y +VD+ G L A+ ++D M V W +++ C +H + A ++
Sbjct: 268 GPNVYVQSALVDMYAKCGDLASARMILDTMEIDDV-VCWNSMIVGCVTHGYMEEALVLFH 326
Query: 374 NLLQLDVKV 382
+ D+++
Sbjct: 327 KMHNRDIRI 335
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/416 (19%), Positives = 145/416 (34%), Gaps = 105/416 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ--LIDDDYRVFCDIGPRYLF-------- 50
++AC +L L + IH I L ++IF+ L+D + C + YLF
Sbjct: 141 LRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKN 200
Query: 51 ----------------------TYNTMINGGVR------------CLCVGNIKMALHLHG 76
+ M N G+ C + +HG
Sbjct: 201 YVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHG 260
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
+ F + + + +DM+ KCG + A RM+ M
Sbjct: 261 CIIWSGFGPNVYVQSALVDMYAKCGDL-----ASARMI-----------------LDTME 298
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
D+V WN+MI HG+ E L F ++ N + Y + + AS +L+ G
Sbjct: 299 IDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGES 358
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+HS + G ++ + ALV MYA+ G+ A F
Sbjct: 359 VHSLTIK----------------------TGFDACKTVSNALVDMYAKQGNLSCALDVFN 396
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVS-LLSGCSHSGPVTK 303
+ +++ISW L++ + G EK F F V+ + S C+ +
Sbjct: 397 KILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEF 456
Query: 304 GKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G+ K + ++ + G L +A ++ D M ++ + W A++
Sbjct: 457 GRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETR-NVISWTAII 511
>gi|302786722|ref|XP_002975132.1| hypothetical protein SELMODRAFT_102729 [Selaginella moellendorffii]
gi|300157291|gb|EFJ23917.1| hypothetical protein SELMODRAFT_102729 [Selaginella moellendorffii]
Length = 404
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 152/334 (45%), Gaps = 50/334 (14%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS-LFCWKFGIIRLL--- 129
+H V + + + S+ + IDM+ KCG+++ A F M + L I+ +
Sbjct: 32 IHTQVVESGYSGELSVGNALIDMYSKCGSLEDARKTFAGMDEKNGLVSIGNAIVHMYGKC 91
Query: 130 -------IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
MF KM ERD VSW TMI++ HG+ E L F + +
Sbjct: 92 GNVADARKMFDKMRERDTVSWTTMIAVYAEHGYDREALQIFKVMLLESVAPDKVTLINVL 151
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
A ++V L G R+V+ + FV SG ++ L +G A+ M+
Sbjct: 152 DACSNVSGLAQG-----RLVYKQ-----FVESGAHELDL-----------VLGNAVARMF 190
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
GS ++A FE ++ R+++SW LI+A++Q G E+ F FV
Sbjct: 191 GSCGSLREAREIFESLAARDVVSWNCLITAYAQHGSFEESLRLFRRMLEECVKPDEVTFV 250
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP- 344
+LS CSH G V G +F +M + ++ CMVDLLG +G L EA++L+ +P
Sbjct: 251 GVLSACSHGGLVADGCQFFVSMVQDYQIPAEEIHYGCMVDLLGRAGRLAEAEELLSRLPC 310
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ V+W +LL +C H + + + LL +
Sbjct: 311 AAANDVMWTSLLSSCKLHSDLDRGKRAAKKLLAM 344
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 37/246 (15%)
Query: 169 HGFGLS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC- 225
HG GL+ + + SA + LE G +H++VV S ++ VG+ LIDMY KCG
Sbjct: 2 HGEGLAPNKVTFLAILSAVSGARGLEEGRKIHTQVVESGYSGELSVGNALIDMYSKCGSL 61
Query: 226 -------------NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
NG+ + IG A+V MY + G+ A F+ M R+ +SW +I+
Sbjct: 62 EDARKTFAGMDEKNGL---VSIGNAIVHMYGKCGNVADARKMFDKMRERDTVSWTTMIAV 118
Query: 273 FSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG----KHYFTAMAKFT 315
+++ G + F +++L CS+ + +G K + + A
Sbjct: 119 YAEHGYDREALQIFKVMLLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESGAHEL 178
Query: 316 YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
+ + G G L EA+++ + + ++ V W L+ A H + + + + R +
Sbjct: 179 DLVLGNAVARMFGSCGSLREAREIFESLAARDV-VSWNCLITAYAQHGSFEESLRLFRRM 237
Query: 376 LQLDVK 381
L+ VK
Sbjct: 238 LEECVK 243
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 148/339 (43%), Gaps = 63/339 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G+++ +LH +K D + S I+M+ KCG + AE
Sbjct: 337 LGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAE----------------- 379
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT-FIELWNHGFGLSSMLYATAFS 183
I+F+ M RD+VSW M+ + G F T F ++ S M + S
Sbjct: 380 -----IIFENMARRDIVSWTAMVCGYVK-GLQFRTAFNLFDDMKVRDVMASEMALVSLLS 433
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A + + L+ G +HS + D+++ S L+DMY KCGC I+++ +I
Sbjct: 434 ACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGC--IDAAAEI--------- 482
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV-------------LEKPRFFFFFVS 290
F M + ++W +I + G L P+ +
Sbjct: 483 -----------FSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLK 531
Query: 291 L-LSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+ L C+H G V +G HYF M ++ C+VDLLG +GLL EA I +MP +
Sbjct: 532 VVLCACTHVGMVDEGLHYFNLMLTLGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQ 591
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
P VIWG+LL AC H+ +L +++ ++++ L G+
Sbjct: 592 PNPVIWGSLLAACRVHHRMELGKIIGQHIIDLAPNDVGA 630
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 163/408 (39%), Gaps = 89/408 (21%)
Query: 5 GSLKSLPIARKIHAQL-----ISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGG 59
G+ KS+ ARK+ ++ +S L+ S F Q C L + + M + G
Sbjct: 168 GASKSVEDARKVFEEMHERDVVSWTLMISAFAQ---------CGQWDNVLRSLDEMQSEG 218
Query: 60 VR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
+ C V + L ++ V ++ +D I + I M+VKCG + A
Sbjct: 219 TKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDA- 277
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
WK F+ MP R+ SWNT+I ++G E L F E+
Sbjct: 278 -------------WK--------TFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEML 316
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ G + + S A + DL+ G +LH+ + E D+ + + LI+MY KC
Sbjct: 317 SDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKC---- 372
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
G A++ FE M+RR+++SW ++ + + G+ + F F
Sbjct: 373 ------------------GDMAAAEIIFENMARRDIVSWTAMVCGYVK-GLQFRTAFNLF 413
Query: 288 --------------FVSLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCMVDLLGLS 330
VSLLS CS G + KG+ Y + T +VD+
Sbjct: 414 DDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKC 473
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
G + A ++ M K T + W A++G S K A + LL+L
Sbjct: 474 GCIDAAAEIFSRMRHKQT-LAWNAMIGGLASQGQGKEAVALFEQLLKL 520
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 47/240 (19%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +M + + WN MI + L F + G +S Y A A++S
Sbjct: 75 VFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSG--VSPDNYTMAAVAQSSAAF 132
Query: 191 LEW-----GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
W G +H+ V + + D+FV SGLI+ Y G S++ + +
Sbjct: 133 ASWKGRATGDAVHALVQRIGFASDLFVMSGLINFY------GASKSVEDARKV------- 179
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPRFFFFFVSL 291
FE M R+++SW ++ISAF+Q G + KP +SL
Sbjct: 180 ---------FEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPN-KITIISL 229
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPT 348
LS C V KG + + ++ L+G+ G + +A K MP + T
Sbjct: 230 LSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNT 289
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 146/346 (42%), Gaps = 62/346 (17%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
T TM+ + C +G+++ +H L+ K S+ S+ S I M+ KC VD A S F
Sbjct: 346 TRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIF 405
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
+ E+ V+WN MI ++G E L F + + G
Sbjct: 406 NNL-----------------------EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQG 442
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
L +A A +H V +VFV + L+DMY KC
Sbjct: 443 IKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKC------- 495
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---- 286
G+ + A F++M R++I+W +I + GV ++ F
Sbjct: 496 ---------------GAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQ 540
Query: 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLL 333
F+S++S CSHSG V +G F +M + Y ++ MVDLLG +G L
Sbjct: 541 KGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQL 600
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+A I EMP KP + GA+LGAC H N +L E + L +LD
Sbjct: 601 DDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLD 646
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/433 (20%), Positives = 171/433 (39%), Gaps = 100/433 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
++ CG L R+IH +I+ S++F+ + ID+ Y++F + + L
Sbjct: 152 LQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDL 211
Query: 50 FTYNTMINGGVRCLCVGNIKMALHL----------------------------------- 74
++ T++ G + G+ K AL L
Sbjct: 212 VSWTTLVAGYAQN---GHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSI 268
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
HG + F S ++ + +DM+ KCG+ A ++F+
Sbjct: 269 HGYAFRSGFESLVNVTNALLDMYFKCGSARIAR----------------------LVFKG 306
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
M + +VSWNTMI ++G E TF+++ + G + + A A++ DLE G
Sbjct: 307 MRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG 366
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCG--------CNGIESSIQIGKALVTMYAEGG 246
+H + ++ +V V + LI MY KC N +E + A++ YA+ G
Sbjct: 367 WFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNVTWNAMILGYAQNG 426
Query: 247 STQKADLAFELMSRRNM----ISWMVLISAFSQAGVLEKPRFF-------------FFFV 289
++A F +M + + + + +I+A + V + ++ F
Sbjct: 427 CVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVST 486
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS---K 346
+L+ + G + + F M + + + M+D G G+ E L +EM K
Sbjct: 487 ALVDMYAKCGAIKTARKLFDMMQE-RHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVK 545
Query: 347 PTCVIWGALLGAC 359
P + + +++ AC
Sbjct: 546 PNDITFLSVISAC 558
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 39/255 (15%)
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
SW +MI+ + G E + F ++ G + + +A A + L+ G +H
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 253
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
+V + + LIDMY+KCGC +E + ++ FE M R
Sbjct: 254 NRHGFKRNVRISNTLIDMYVKCGC--LEEACKV--------------------FEEMEER 291
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF 308
++SW +I + G E+ F F+ LL CSH G +++G+ +F
Sbjct: 292 TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFF 351
Query: 309 TAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
+M + ++ CMVDLL +GLL EA + I MP KP V+WGALLGAC H N
Sbjct: 352 ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKN 411
Query: 365 TKLAELVMRNLLQLD 379
++AE +++LL+LD
Sbjct: 412 VEMAEEAIKHLLELD 426
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 22/105 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + + + +H + F + I+ + IDM+VKCG ++ A
Sbjct: 237 CADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEA--------------- 281
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166
+F++M ER +VSW+ MI L HG E L F ++
Sbjct: 282 -------CKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDM 319
>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
Length = 702
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 152/342 (44%), Gaps = 78/342 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + ++H ++ K F SD I + I M+ KCG V+ A
Sbjct: 380 CGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKA--------------- 424
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +P ++VSWNT+I+ F ++ + GF SS+ ++
Sbjct: 425 -------CRVFDWIP--NVVSWNTLIA-------------GFSQMLDQGFCPSSVTISSL 462
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A +V +L G +H + + G+E + + ALV M
Sbjct: 463 LPACTNVANLRHGKEIHGYAMVI----------------------GVEKDVYVRSALVDM 500
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
YA+ G +A + F +M RN ++W LI ++ G + F F
Sbjct: 501 YAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTF 560
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
++L+ CSH+G V G+ F M + Y ++ CMVDLLG +G L EA LI M
Sbjct: 561 TAVLNACSHAGMVELGESLFRKMQE-KYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAM 619
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
P +P +WGALLGAC +H N +LAE+ +L +L+ + GS
Sbjct: 620 PVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGS 661
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 44/216 (20%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G +++ H V K SDE + S IDM+ KCG VD A
Sbjct: 127 GCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA------------------- 167
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+ ++ KM D + N +IS R+GF + F+++ N G + Y+T +
Sbjct: 168 ---VRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVC 224
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
++ ++ G LH+ VV M+ + VG+ L+ +Y KC
Sbjct: 225 GTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKC---------------------- 262
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
G ++A++ FE + +RN+ISW I+ F Q G +K
Sbjct: 263 GMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKK 298
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 98/434 (22%), Positives = 172/434 (39%), Gaps = 94/434 (21%)
Query: 4 CGSLKSLPIARKIHAQLIS------TCLISS-----IFLQLIDDDYRVFCDIG-----PR 47
CG + S A +++ ++ S CLIS+ F+Q ++VF IG P
Sbjct: 161 CGEVDS---AVRVYDKMTSLDAATCNCLISAYARNGFFVQA----FQVFMQIGNMGTRPN 213
Query: 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
+ +TY+TM+ C + I+ LH V K ++S+ ++ + + ++ KCG ++ AE
Sbjct: 214 H-YTYSTML---AVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAE 269
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
I+F+ + +R+++SW I+ +HG + L F +
Sbjct: 270 ----------------------IVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMR 307
Query: 168 NHGFGLSSMLYATAFSA---------RASVYDLEW-GPHLHS------------RVVHME 205
G + ++ ++ + W G HL S + +
Sbjct: 308 ESGIEPNEFTFSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLR 367
Query: 206 PSL--------------DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
P+ D G + + LK N ES I AL+ MY++ G +KA
Sbjct: 368 PNQFVLPSILKACGHLSDRRTGENMHTVILK---NSFESDAYIISALIYMYSKCGHVEKA 424
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK--HYFT 309
F+ + N++SW LI+ FSQ SLL C++ + GK H +
Sbjct: 425 CRVFDWIP--NVVSWNTLIAGFSQMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYA 482
Query: 310 AMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ Y +VD+ G + EAK L MP + T V W +L+ +H A
Sbjct: 483 MVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNT-VTWNSLIFGYANHGYCNEA 541
Query: 369 ELVMRNLLQLDVKV 382
+ + + D K+
Sbjct: 542 IELFNQMEESDTKL 555
>gi|302822511|ref|XP_002992913.1| hypothetical protein SELMODRAFT_136241 [Selaginella moellendorffii]
gi|300139258|gb|EFJ06002.1| hypothetical protein SELMODRAFT_136241 [Selaginella moellendorffii]
Length = 510
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 175/430 (40%), Gaps = 91/430 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
++ CG L +L + +HA + S L FL +D+ F +I + +
Sbjct: 62 LQECGRLNALAAGKLVHAHIRSMRLEHDRFLGNLVVDMYGRCGRLDEAAAAFQEIHEKNV 121
Query: 50 FTYNTMINGGV---RCLCVGNIKMALHLHGL-VKKFYFVS-------------------- 85
F++N I + + + + LHG+ + F++
Sbjct: 122 FSWNIWIGANAMNGQSMAALELLKKMELHGIKATRVTFLNALSACAAPELLAQARSIVEK 181
Query: 86 --------DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI------------ 125
D +A + + + +CGA+ A F M ++ W I
Sbjct: 182 ITAAGMDRDVLVATAVVSAYARCGAMASAREVFDAMPARNIVSWNAMIEAYAQHGRGADA 241
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
I +F + R +S + MI+ L ++GF E L + E+ G ++M + + A
Sbjct: 242 IAARQVFDSIAPRTAISCSVMITTLAQNGFYREALELYREMQEEGLESNNMTFLSLLEAS 301
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A + L G +H+ ++ + D+ + + L+ MY KC
Sbjct: 302 AHLTALGQGRRIHASIIDYGLARDLLIQTALVYMYGKCA--------------------- 340
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
S +A FE M R+N+++W +I+A+SQ G E+ F + +LL
Sbjct: 341 -SLDEAREVFESMERKNVVAWTSIIAAYSQHGHCEESLELFRRMALDGVMPNEVTYGTLL 399
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
S CSH+G V + F M T ++ CMVD LG +G L EA+ L++ MP +P V W
Sbjct: 400 STCSHAGLVDEAYDNFVEMKNPRLT-HYRCMVDALGRAGKLDEAEDLLNNMPFEPDSVAW 458
Query: 353 GALLGACCSH 362
LGAC +H
Sbjct: 459 VLFLGACKTH 468
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 149/344 (43%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC- 120
C GN+ +H VK + D + + I+M+ CGA+D A + + + L
Sbjct: 232 CGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVS 291
Query: 121 -------WKFGIIR-LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
K G+++ +F +M ERDLV W+ MIS E L F E+
Sbjct: 292 TAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSV 351
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + SA + V L +H+ V +G ++
Sbjct: 352 PDQITMLSVISACSHVGALAQANWIHTYVDR----------------------SGFGRAL 389
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+ AL+ MYA+ G+ KA FE M R+N+ISW +I+AF+ G + F
Sbjct: 390 SVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEV 449
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
F+ +L C H+G V +G+ F++M ++ CMVDL + L +
Sbjct: 450 NIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRK 509
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A +LI+ MP P +IWG+L+ AC H +L E + LL+L+
Sbjct: 510 AIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELE 553
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 147/345 (42%), Gaps = 48/345 (13%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
V L +HGL K FV D I I M+ C R+++ L
Sbjct: 134 VSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCR----------RIMDARL------ 177
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+F KM D V+WN +I ++G + L F ++ + S++ T SA
Sbjct: 178 ------LFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSA 231
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------NGIESS-IQIG 235
+L +G +H V ++D + + LI+MY CG +G+ S + +
Sbjct: 232 CGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVS 291
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--------- 286
A+++ YA+ G + A F+ M R+++ W +IS ++++ ++ F
Sbjct: 292 TAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSV 351
Query: 287 ----FFVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKL 339
+S++S CSH G + + H + + F ++D+ G L +A+++
Sbjct: 352 PDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREV 411
Query: 340 IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+ MP K + W +++ A H N A + R + +++++ G
Sbjct: 412 FENMPRK-NVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNG 455
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 150/339 (44%), Gaps = 66/339 (19%)
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
GGV L G +H + + + + + + +DM+ KC ++ AE+
Sbjct: 285 GGVMALQEGK-----QVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAET--------- 330
Query: 118 LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
+F+KM +++VSW M+ ++G+ E + F ++ N+G
Sbjct: 331 -------------VFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFT 377
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
+ S+ A++ LE G H R + SGLI S I + A
Sbjct: 378 LGSVISSCANLASLEEGAQFHCRAL----------VSGLI------------SFITVSNA 415
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF----------- 285
LVT+Y + GS + + F MS + +SW L+S ++Q G E R F
Sbjct: 416 LVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPD 475
Query: 286 -FFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLI 340
F+ +LS CS +G V KG F +M K ++ CM+DL +G L EA+K I
Sbjct: 476 KVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFI 535
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
++MP P + W +LL +C H N ++ + +LL+L+
Sbjct: 536 NKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLE 574
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 135/317 (42%), Gaps = 50/317 (15%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G + + L +HG V KF F S + +DM+ K G V A AF M ++ + I
Sbjct: 156 GCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLI 215
Query: 126 IRLL---------IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
L+ +F M E+D +SW MI+ T++G E + F E+ +
Sbjct: 216 AGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQY 275
Query: 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGK 236
+ + +A V L+ G +H+ ++ + ++FVGS L+DMY KC
Sbjct: 276 TFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKC------------- 322
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF---------- 285
S + A+ F M+ +N++SW ++ + Q G E+ + F
Sbjct: 323 ---------KSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEP 373
Query: 286 --FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV----CMVDLLGLSGLLGEAKKL 339
F S++S C++ + +G F A + F+ +V L G G + ++ +L
Sbjct: 374 DDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRL 432
Query: 340 IDEMPSKPTCVIWGALL 356
EM S V W AL+
Sbjct: 433 FSEM-SYVDEVSWTALV 448
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 122/299 (40%), Gaps = 38/299 (12%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWN 144
+ + K + YA F +M +L+ W + + +F MP RD+VSWN
Sbjct: 51 VSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWN 110
Query: 145 TMISILTRHGFGFETLCTF-IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
++IS GF +++ + + L+N F L+ + +T + + G +H VV
Sbjct: 111 SLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVK 170
Query: 204 MEPSLDVFVGSGLIDMYLKCGC---------NGIESSIQIGKALVTMYAEGGSTQKADLA 254
VFVGS L+DMY K G E ++ + L+ + +
Sbjct: 171 FGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQL 230
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLSGCSHSGP 300
F M ++ ISW +I+ F+Q G L++ F F S+L+ C
Sbjct: 231 FYDMQEKDSISWTAMIAGFTQNG-LDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMA 289
Query: 301 VTKGKHYFTAMAKFTYT-CYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ +GK + + Y FV +VD+ + A+ + +M K V W A+L
Sbjct: 290 LQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCK-NVVSWTAML 347
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 179/419 (42%), Gaps = 73/419 (17%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFT 51
AC L+ + + R +H+ L L + + + ++F +I R +
Sbjct: 141 ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS 200
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
+N+MI+G G K A+ L +++ F DE ++ + M C + +
Sbjct: 201 WNSMISGYSEA---GYAKDAMDLFRKMEEEGFEPDE---RTLVSMLGACSHLGDLRTG-- 252
Query: 112 RMLNPSLFCWKFGIIRLL------------------IMFQKMPERDLVSWNTMISILTRH 153
R+L K G+ L +F +M ++D V+W MI++ +++
Sbjct: 253 RLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQN 312
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E F E+ G + +T SA SV LE G + + + +++V
Sbjct: 313 GKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVA 372
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+GL+DMY KCG +E ++++ FE M +N +W +I+A+
Sbjct: 373 TGLVDMYGKCG--RVEEALRV--------------------FEAMPVKNEATWNAMITAY 410
Query: 274 SQAGVLEKPRFFF----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
+ G ++ F F+ +LS C H+G V +G YF M+ +
Sbjct: 411 AHQGHAKEALLLFDRMSVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEH 470
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ ++DLL +G+L EA + ++ P KP ++ A+LGAC + + E MR L+++
Sbjct: 471 YTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEM 529
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 132/338 (39%), Gaps = 64/338 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTYN + + C + I + +H + K D I S I M+ KCG V YA
Sbjct: 133 FTYNFVF---IACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARK- 188
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F ++ ERD VSWN+MIS + G+ + + F ++
Sbjct: 189 ---------------------LFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEE 227
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
GF + A + + DL G L + + L F+GS LI MY KC
Sbjct: 228 GFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKC------ 281
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
G A F M +++ ++W +I+ +SQ G + FF
Sbjct: 282 ----------------GDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM 325
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAKFT--YTCYFVC-MVDLLGLSGLL 333
++LS C G + GK T ++ + + Y +VD+ G G +
Sbjct: 326 EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 385
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
EA ++ + MP K W A++ A + K A L+
Sbjct: 386 EEALRVFEAMPVKNEAT-WNAMITAYAHQGHAKEALLL 422
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 95/243 (39%), Gaps = 40/243 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFET-LCTFIELWNHGFGLSSMLYATAFSARASVY 189
+F E + S+N MI LT E L + + G Y F A A +
Sbjct: 87 LFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLE 146
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
++ G +HS + + DV + LI MY KCG Q+G A
Sbjct: 147 EIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCG--------QVGYARKL--------- 189
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
F+ ++ R+ +SW +IS +S+AG + F VS+L CS
Sbjct: 190 -----FDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACS 244
Query: 297 HSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
H G + G+ K + + ++ + G G L A+++ ++M K V W
Sbjct: 245 HLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDR-VAWT 303
Query: 354 ALL 356
A++
Sbjct: 304 AMI 306
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 148/344 (43%), Gaps = 42/344 (12%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSS--IDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
N++M +H V + + ++ +DM+ KCG + A F + ++ W
Sbjct: 238 TANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWT 297
Query: 123 F---GIIR------LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
G IR +F RD++ W M+S + + F ++ G
Sbjct: 298 AMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRP 357
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG--------- 224
+ + + S A L+ G +HS + +D + + L+DMY KCG
Sbjct: 358 TKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLF 417
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRF 284
I I + A++T +A G ++A F M R+ + KP
Sbjct: 418 IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGV-----------------KPND 460
Query: 285 FFFFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLI 340
F + LL CSH+G VT+GK F M ++ CMVDLLG +GLL EA ++I
Sbjct: 461 ITF-IGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMI 519
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
MP KP ++WGAL+ AC H N +L EL LL+++ + G
Sbjct: 520 KSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCG 563
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 151/367 (41%), Gaps = 70/367 (19%)
Query: 28 SIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE 87
+++ QL D+ V + P L C V ++ +HG V K D
Sbjct: 110 NVYAQLRKMDFEVDNFMAPSVLKA----------CGQVSWTQLGKEIHGFVLKKGLDRDV 159
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+ + + M+ +C V+YA ++F KM ERD+VSW+TMI
Sbjct: 160 FVGNALMLMYGECACVEYAR----------------------LVFDKMMERDVVSWSTMI 197
Query: 148 SILTRH---GFGFETL--CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
L+R+ E + F+++ + SM+ A +A ++ G +H+ V+
Sbjct: 198 RSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTA-----NMRMGKAMHAYVI 252
Query: 203 HMEPS--LDVFVGSGLIDMYLKCGCNGIESSIQIG---KALVTMYA------EGGSTQKA 251
+ + V + L+DMY KCG G+ + G K +V+ A ++A
Sbjct: 253 RNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEA 312
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHS 298
F+ R+++ W ++SA++QA +++ F VSLLS C+ +
Sbjct: 313 RALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVA 372
Query: 299 GPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G + GK H + + C +VD+ G + A +L E S+ C +W A+
Sbjct: 373 GALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDIC-MWNAI 431
Query: 356 LGACCSH 362
+ H
Sbjct: 432 ITGFAMH 438
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 41/260 (15%)
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
WN +I+ T+ L + +L F + + + + A V + G +H V
Sbjct: 91 QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 150
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
+ DVFVG+ AL+ MY E + A L F+ M R
Sbjct: 151 LKKGLDRDVFVGN----------------------ALMLMYGECACVEYARLVFDKMMER 188
Query: 262 NMISWMVLISAFSQAG----VLEKPRFFFF---------FVSLLSGCSHSGPVTKGKHYF 308
+++SW +I + S+ LE R F VS+++ + + + GK
Sbjct: 189 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 248
Query: 309 TAMAKFTYTCYF-----VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
+ + + + ++D+ G LG A++L + + K T V W A++ C
Sbjct: 249 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQK-TVVSWTAMIAGCIRSN 307
Query: 364 NTKLAELVMRNLLQLDVKVF 383
+ A + + DV ++
Sbjct: 308 RLEEARALFDSTQNRDVMIW 327
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 130/273 (47%), Gaps = 40/273 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F +M +DLV WN+M S + E L F+EL + +A ++
Sbjct: 510 LVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLA 569
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L+ G H +++ G+E + I AL+ MYA+ GS +
Sbjct: 570 SLQLGQEFHCQLLK----------------------RGLECNPYITNALLDMYAKCGSPE 607
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAG-------VLEK-------PRFFFFFVSLLSGC 295
A AF+ + R+++ W +IS+++ G +LEK P + F V +LS C
Sbjct: 608 DAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITF-VGVLSAC 666
Query: 296 SHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
SH+G V G F M +F T ++VCMV LLG +G L EA++LI++MP+KP ++W
Sbjct: 667 SHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVW 726
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+LL C N +LAE + D K GS
Sbjct: 727 RSLLSGCAKAGNVELAEYAAEMAILSDPKDSGS 759
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 54/265 (20%)
Query: 117 SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN------HG 170
+L+ G++ +F+KMPER+LV+W+TM+S HGF E+L F++ W +
Sbjct: 87 NLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNE 146
Query: 171 FGLSSMLYATA---FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
+ LSS + A + S R V+ L+ S +V DV+VG+ LID YLK
Sbjct: 147 YILSSFIQACSGLDGSGRWMVFQLQ------SFLVKSRFDRDVYVGTLLIDFYLK----- 195
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG--VLEKPRFF 285
G+ A L F+ + ++ ++W +IS + G + F+
Sbjct: 196 -----------------EGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFY 238
Query: 286 -----------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSG 331
+ ++LS CS + GK + ++ + ++D G
Sbjct: 239 QLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCG 298
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALL 356
+ A KL D MP+K + W LL
Sbjct: 299 RVRAAHKLFDGMPNK-NIISWTTLL 322
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 112/288 (38%), Gaps = 60/288 (20%)
Query: 70 MALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129
M L + K F D + ID ++K G +DYA
Sbjct: 166 MVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYAR---------------------- 203
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F +PE+ V+W TMIS + G + +L F +L + +T SA + +
Sbjct: 204 LVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILP 263
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
LE G +H+ ++ D + + LID Y+KC G +
Sbjct: 264 FLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKC----------------------GRVR 301
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEK--------PRF-----FFFFVSLLSGCS 296
A F+ M +N+ISW L+S + Q + ++ P+F F S+L+ C+
Sbjct: 302 AAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCA 361
Query: 297 --HSGPVTKGKHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLID 341
H+ H +T A Y ++D+ L EA+K+ D
Sbjct: 362 SLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFD 409
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 20/153 (13%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+G+E + L+ +Y+ G A FE M RN+++W ++SA + G E+
Sbjct: 73 SGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVV 132
Query: 286 FF-----------------FVSLLSGCSHSGP-VTKGKHYFTAMAKFTYTCYF-VCMVDL 326
F F+ SG SG + F ++F Y ++D
Sbjct: 133 FLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDF 192
Query: 327 LGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G + A+ + D +P K T V W ++ C
Sbjct: 193 YLKEGNIDYARLVFDALPEKST-VTWTTMISGC 224
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 117/437 (26%), Positives = 181/437 (41%), Gaps = 91/437 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC SL + ++ H Q S IF+ ++D +VF +I R +
Sbjct: 83 IKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNI 142
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
++ +MI G GN AL L K ++ A +D +
Sbjct: 143 VSWTSMIRG---YDLNGN---ALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRV 196
Query: 110 FLRMLNPSL--FCWKFGIIRLL----------------------IMFQKMPERDLVSWNT 145
+ L S+ F K G R + +F ++ ++D VS+N+
Sbjct: 197 AAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256
Query: 146 MISILTRHGFGFETLCTFIELWNHG------FGLSSMLYATAFSARASVYDLEWGPHLHS 199
++S+ + G E F L LS++L A + S L G +H
Sbjct: 257 IMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGA-----LRIGKCIHD 311
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+V+ M DV VG+ +IDMY C C +E+ A LAF+ M
Sbjct: 312 QVIRMGLEDDVIVGTSIIDMY--CKCGRVET--------------------ARLAFDRMK 349
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
+N+ SW +I+ + G K F FVS+L+ CSH+G G H
Sbjct: 350 NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWH 409
Query: 307 YFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
+F AM +F ++ CMVDLLG +G L +A LI +M +P +IW +LL AC H
Sbjct: 410 WFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIH 469
Query: 363 YNTKLAELVMRNLLQLD 379
N +LAE+ + L +LD
Sbjct: 470 KNVELAEISVARLFELD 486
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 23/151 (15%)
Query: 128 LLIMFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
L +F + ++ D+ SWN++I+ L R G E L F + + + A A +
Sbjct: 28 LTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACS 87
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
S+ D+ G H + VF G +S I + AL+ MY+ G
Sbjct: 88 SLLDIFSGKQTHQQAF-------VF---------------GYQSDIFVSSALIVMYSTCG 125
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAG 277
+ A F+ + +RN++SW +I + G
Sbjct: 126 KLEDARKVFDEIPKRNIVSWTSMIRGYDLNG 156
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 125/269 (46%), Gaps = 46/269 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER LVSWN+MI L R G L F E+ F + SA A +
Sbjct: 199 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGS 257
Query: 191 LEWGPHLHS---RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
L G H+ R ++ ++DV V + LI+MY KCG S
Sbjct: 258 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG----------------------S 295
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------FFVSLL 292
+ A+ F+ M +R++ SW +I F+ G E+ FF FV LL
Sbjct: 296 LRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLL 355
Query: 293 SGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
C+H G V KG+ YF M + ++ C+VDL+ +G + EA ++ MP KP
Sbjct: 356 IACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPD 415
Query: 349 CVIWGALLGACCSH-YNTKLAELVMRNLL 376
VIW +LL ACC + +L+E + RN++
Sbjct: 416 AVIWRSLLDACCKKGASVELSEEIARNII 444
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 33/191 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC + +++H Q++ +++ +D +VF ++ R L
Sbjct: 149 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 208
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA------- 102
++N+MI+ VR G AL L +++ F D +S + G+
Sbjct: 209 VSWNSMIDALVR---FGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWA 264
Query: 103 ---------VDYAESAFLRMLNPSLFCWKFGIIRLL-IMFQKMPERDLVSWNTMISILTR 152
VD A ++ ++C K G +R+ +FQ M +RDL SWN MI
Sbjct: 265 HAFLLRKCDVDVAMDVLVKNSLIEMYC-KCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 323
Query: 153 HGFGFETLCTF 163
HG E + F
Sbjct: 324 HGRAEEAMNFF 334
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 179/419 (42%), Gaps = 73/419 (17%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFT 51
AC L+ + + R +H+ L L + + + ++F +I R +
Sbjct: 137 ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS 196
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
+N+MI+G G K A+ L +++ F DE ++ + M C + +
Sbjct: 197 WNSMISGYSEA---GYAKDAMDLFRKMEEEGFEPDE---RTLVSMLGACSHLGDLRTG-- 248
Query: 112 RMLNPSLFCWKFGIIRLL------------------IMFQKMPERDLVSWNTMISILTRH 153
R+L K G+ L +F +M ++D V+W MI++ +++
Sbjct: 249 RLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQN 308
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E F E+ G + +T SA SV LE G + + + +++V
Sbjct: 309 GKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVA 368
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+GL+DMY KCG +E ++++ FE M +N +W +I+A+
Sbjct: 369 TGLVDMYGKCG--RVEEALRV--------------------FEAMPVKNEATWNAMITAY 406
Query: 274 SQAGVLEKPRFFF----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
+ G ++ F F+ +LS C H+G V +G YF M+ +
Sbjct: 407 AHQGHAKEALLLFDRMSVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEH 466
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ ++DLL +G+L EA + ++ P KP ++ A+LGAC + + E MR L+++
Sbjct: 467 YTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEM 525
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 132/338 (39%), Gaps = 64/338 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTYN + + C + I + +H + K D I S I M+ KCG V YA
Sbjct: 129 FTYNFVF---IACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARK- 184
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F ++ ERD VSWN+MIS + G+ + + F ++
Sbjct: 185 ---------------------LFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEE 223
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
GF + A + + DL G L + + L F+GS LI MY KC
Sbjct: 224 GFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKC------ 277
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
G A F M +++ ++W +I+ +SQ G + FF
Sbjct: 278 ----------------GDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM 321
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAKFT--YTCYFVC-MVDLLGLSGLL 333
++LS C G + GK T ++ + + Y +VD+ G G +
Sbjct: 322 EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 381
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
EA ++ + MP K W A++ A + K A L+
Sbjct: 382 EEALRVFEAMPVKNEAT-WNAMITAYAHQGHAKEALLL 418
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 95/243 (39%), Gaps = 40/243 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFET-LCTFIELWNHGFGLSSMLYATAFSARASVY 189
+F E + S+N MI LT E L + + G Y F A A +
Sbjct: 83 LFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLE 142
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
++ G +HS + + DV + LI MY KCG Q+G A
Sbjct: 143 EIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCG--------QVGYARKL--------- 185
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
F+ ++ R+ +SW +IS +S+AG + F VS+L CS
Sbjct: 186 -----FDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACS 240
Query: 297 HSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
H G + G+ K + + ++ + G G L A+++ ++M K V W
Sbjct: 241 HLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDR-VAWT 299
Query: 354 ALL 356
A++
Sbjct: 300 AMI 302
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 140/275 (50%), Gaps = 44/275 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTF--IELWNHGFGLSSMLYATAFSARASV 188
+F++MP+R+++SW +I+ + + + F ++L N +ML A AR
Sbjct: 170 LFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGA 229
Query: 189 YDL-EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+L EW H R+ GL+ ++I + AL+ MYA+ G
Sbjct: 230 LELGEWIRHYIDRL-------------GLL-----------TTNIPLNNALIDMYAKSGD 265
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGV----------LEKPRFF---FFFVSLLSG 294
+ A FE M+ + +I+W +I+ + G+ +E+ R F+++LS
Sbjct: 266 IKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSA 325
Query: 295 CSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CSH G V G+ YF M +++ ++ CM+DLLG +G L EA+ L+ +MP +P V
Sbjct: 326 CSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAV 385
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
IWG+LL AC +H + +L EL +++LL+L+ G+
Sbjct: 386 IWGSLLAACNTHGDPELGELALQHLLELEPDNSGN 420
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 33/223 (14%)
Query: 172 GLSSMLYATAFSARASVY--DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY--LKCGC-- 225
GL Y+ F+ +A ++ G LHS+ + D+ V + + MY GC
Sbjct: 73 GLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCIC 132
Query: 226 ------NGIESS---IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+G+ S + + A++ YA+ G A FE M +RN+ISW LI+ ++QA
Sbjct: 133 DARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQA 192
Query: 277 GVLEKPRFFFFFVSL-------------LSGCSHSGPVTKG---KHYFTAMAKFTYTCYF 320
F + L L+ C+ G + G +HY + T
Sbjct: 193 NRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPL 252
Query: 321 -VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
++D+ SG + A ++ + M K T + W ++ H
Sbjct: 253 NNALIDMYAKSGDIKSALQVFENMNHK-TIITWTTMIAGLALH 294
>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
Length = 1083
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 147/342 (42%), Gaps = 52/342 (15%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---- 122
N+K +HGLV K S+ I + + ++ + G + AE F M L W
Sbjct: 592 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMA 651
Query: 123 --------FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174
+++L +M + D V+WN +I + E + + + G +
Sbjct: 652 CYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIP-A 710
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234
+ + + +A A++ LE G LH V+ + G ES + +
Sbjct: 711 NYITMVSLAATANLAVLEEGQQLHGLVIKL----------------------GFESDLHV 748
Query: 235 GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------- 287
A + MY + G R+ +SW +LISAF++ G +K R F
Sbjct: 749 TNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGP 808
Query: 288 ------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAK 337
FVSLLS C+H G V +G Y+ +M + F + VC++DLLG SG L A+
Sbjct: 809 KPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAE 868
Query: 338 KLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
I EMP P + W +LL AC H N +LA +LL+LD
Sbjct: 869 GFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELD 910
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 116/339 (34%), Gaps = 100/339 (29%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+D H KCG ++ A +F M ERD+VSWN MI
Sbjct: 134 VDFHSKCGKMEDAS----------------------YLFGTMMERDVVSWNAMIGGYAVQ 171
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME-PSLDVFV 212
GF ++ C F + G + A A L +H + + S D+
Sbjct: 172 GFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVT 231
Query: 213 GSGLIDMYLKCGC--------NGI-----------------ESSIQIGKALVTMYAEGGS 247
G LI+ Y K G G+ E +G AL+ MYA+ G
Sbjct: 232 GL-LINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGE 290
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAG---------VLEKPRFF------------- 285
+ A AF+ M +N+ISW LIS +++ G V ++ R
Sbjct: 291 IEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYV 350
Query: 286 ------------------------FFFVSLLSGCSHSGPVTKGK---HYFTAMAKFTYTC 318
F SL++ CS SG + H F
Sbjct: 351 RVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDV 410
Query: 319 YF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
Y +V G GL+ A+KL +EMP V W +L+
Sbjct: 411 YVGTALVHFYGSIGLVYNAQKLFEEMPDH-NVVSWTSLM 448
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 34/202 (16%)
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG---IIRLLIMFQKMP 136
++ + IDM+ K G ++ A+ AF M ++ W K G + +F +M
Sbjct: 276 TMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMR 335
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA-RASVYDLEWGP 195
R+ SW+TM+S R G E + F ++W G + + A+ +A S Y + G
Sbjct: 336 HRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGF 395
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+H VV GI + +G ALV Y G A F
Sbjct: 396 QVHGFVVK----------------------TGILGDVYVGTALVHFYGSIGLVYNAQKLF 433
Query: 256 ELMSRRNMISWMVLISAFSQAG 277
E M N++SW L+ +S +G
Sbjct: 434 EEMPDHNVVSWTSLMVGYSDSG 455
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F++MP+ ++VSW +++ + G E L + + G + +AT S+ + D
Sbjct: 432 LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 491
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
G + ++ G E S+ + +L++M++ S ++
Sbjct: 492 QVLGYQVLGHIIQY----------------------GFEDSVSVANSLISMFSSFSSVEE 529
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298
A F+ M+ ++ISW +ISA++ G+ + F ++ L ++S
Sbjct: 530 ACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 577
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 107/266 (40%), Gaps = 40/266 (15%)
Query: 118 LFCWKFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176
+F K G +I +F MPER +VSW M+S +++G + F ++ + G +
Sbjct: 73 IFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHA 132
Query: 177 LYATAFSAR-ASVYDLEW--GPHLHSRVVHMEPSLDVFVGSGLID----MYLKCGCNGIE 229
L F ++ + D + G + VV + + G D M+ G+
Sbjct: 133 L--VDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLV 190
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV----LISAFSQAGVLEKP--- 282
+++ AEGG A+ ++++ S+ + LI+A+++ G L
Sbjct: 191 PDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDL 250
Query: 283 ------RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEA 336
+ F +L++G +H G T G ++D+ SG + +A
Sbjct: 251 RKGMLKKDLFSSTALITGYAHEGIYTMGN----------------ALIDMYAKSGEIEDA 294
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSH 362
K+ DEM K + W +L+ H
Sbjct: 295 KRAFDEMEEK-NVISWTSLISGYAKH 319
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 24/133 (18%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
NG S + + L+ Y + G A F+ M R+++SW ++S +SQ G EK
Sbjct: 59 NGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKA--- 115
Query: 286 FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
FV L S H G K H A+ F C G + +A L M
Sbjct: 116 --FV-LFSDMRHCG--VKANH---ALVDFHSKC------------GKMEDASYLFGTMME 155
Query: 346 KPTCVIWGALLGA 358
+ V W A++G
Sbjct: 156 RDV-VSWNAMIGG 167
>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 938
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 143/327 (43%), Gaps = 63/327 (19%)
Query: 70 MALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129
+ +H H +V F D+ + S I M+ KCG D S+++
Sbjct: 485 IPIHAHTVVTGFDL--DQHVQSSLITMYAKCG--DLHSSSYI------------------ 522
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
F ++ + WN +I+ R+GFG E L + + + G ++TA S A +
Sbjct: 523 --FDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLA 580
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
LE G LH + + LD F+ + +DMY KCG ++ AL + Q
Sbjct: 581 MLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCG--------ELDDALRIL------PQ 626
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCS 296
D R+ +SW LIS ++ G K + F FV LLS CS
Sbjct: 627 PTD--------RSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACS 678
Query: 297 HSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
H G V +G Y+ +M + VCM+DLLG SG L EA+ I EMP P ++W
Sbjct: 679 HGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVW 738
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLD 379
+LL +C + N L ++LL+LD
Sbjct: 739 RSLLASCRIYRNLDLGRKAAKHLLELD 765
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTF--IELWNHGFGLSSMLYATAFSARASV 188
+F +M ERD +SWN++IS ++ E+ F + L + +++ + S SV
Sbjct: 217 IFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTL--SILLSICGSV 274
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
L+WG +H GL Y G+ES+I + L+++Y++ G +
Sbjct: 275 DYLKWGKGVH----------------GLAVKY------GLESNICLCNTLLSVYSDAGRS 312
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGV-------------LEKPRFFFFFVSLLSGC 295
+ A+L F M R++ISW +++ + Q G ++K + F S L+ C
Sbjct: 313 KDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAAC 372
Query: 296 SHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
T GK H F + ++ G + EAKK+ MP K V W
Sbjct: 373 LDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMP-KLDKVTW 431
Query: 353 GALLGACCSHYNTKLAELV 371
AL+G + N +L E V
Sbjct: 432 NALIGGFAN--NAELNEAV 448
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
MF +MP+R++VSW +++ + +G E + T+ + + G + A S+ +
Sbjct: 116 MFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFL-- 173
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
+D+ +G L+ LK G+E+ + +L+ M+ G +
Sbjct: 174 -----------------MDIILGHQLLGHALKF---GLETKVSAANSLIFMFGGCGDINE 213
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
A F M+ R+ ISW +ISA +Q + E+ +F ++ L+
Sbjct: 214 ACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLV 255
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 26/159 (16%)
Query: 122 KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
KFG I ++F +M ER+ SWN M+S R G E + F ++ G S + A+
Sbjct: 4 KFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMIAS 63
Query: 181 AFSA--RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
+A ++S+ E G H + DVFVG+ +
Sbjct: 64 LVTACNKSSIMAKE-GFQFHGFAIKCGLIYDVFVGT----------------------SF 100
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
V YA G A F M RN++SW L+ ++S G
Sbjct: 101 VHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNG 139
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 18/133 (13%)
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FF 287
MY++ G A L F+ MS RN SW ++S + + G +E FF F
Sbjct: 1 MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60
Query: 288 FVSLLSGCSHSGPVTKGK---HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEM 343
SL++ C+ S + K H F Y + V G++ A+K+ +EM
Sbjct: 61 IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120
Query: 344 PSKPTCVIWGALL 356
P + V W +L+
Sbjct: 121 PDR-NVVSWTSLM 132
>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 784
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 152/348 (43%), Gaps = 60/348 (17%)
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
N++++ C VG I + +H K + + S+A S +DM+ K G V
Sbjct: 442 NSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTAT------ 495
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
W+ +F + +RD++SWNT+IS + G E + F ++
Sbjct: 496 --------WR--------IFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVY 539
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + SA A + L+ G +H Y+K NG ES+I
Sbjct: 540 PNKVTCIIVLSACAHLASLDEGEKIHQ--------------------YIKE--NGFESNI 577
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
I AL+ MYA+ G + + F R++I W V+IS + G +E F
Sbjct: 578 TIRTALIDMYAKCGELETSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEES 637
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEA 336
F+SLLS C+H+G V +G+H F M K+ ++ ++DLLG SG L A
Sbjct: 638 NIKPNAQTFLSLLSACNHTGHVLEGRHLFDRMQKYGIEPSLKHYASIIDLLGRSGSLEAA 697
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+ L+ MP P +WG+LL AC H ++ + R ++ D K G
Sbjct: 698 EALVLSMPITPDGTVWGSLLSACKIHNEFEVGVRLARYAIESDPKNDG 745
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 135/341 (39%), Gaps = 59/341 (17%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
Y T+ +G C+ + + LHGL K F+ E + + + M+ +CG+ + A F
Sbjct: 239 NYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCF 298
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
K+ ++DL+SW ++I++ ++ G E L F E+
Sbjct: 299 C----------------------KLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASE 336
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
++ + + + G H+R++ +L + L+ MY K G G +
Sbjct: 337 IIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTAN 396
Query: 231 SI--------QIGKALVTMYAEGGSTQKADLAF----ELMSRR-NMISWMVLISAFSQAG 277
I + ++ Y+ G +K ++F L+ R ++ S + +IS+ SQ G
Sbjct: 397 KIFHSFHKSSEDWSTMILGYSNMGQKEKC-ISFLREMLLLGREPDLNSLVSVISSCSQVG 455
Query: 278 VLEKPRFFFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMV 324
+ R + SL+ SG VT F + + ++
Sbjct: 456 AINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNT-LI 514
Query: 325 DLLGLSGLLGEAKKLIDEM------PSKPTCVIWGALLGAC 359
SG+L EA L D+M P+K TC+I +L AC
Sbjct: 515 SSYKQSGILAEAIILFDKMVKEKVYPNKVTCII---VLSAC 552
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 45/212 (21%)
Query: 71 ALHLHGLVKKF-YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129
+++HGL K FV + +I S I M+ KCG V+ A
Sbjct: 157 GMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESAS---------------------- 194
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
IMF ++ +D+V+W +I ++ L E+ G + + F A +
Sbjct: 195 IMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLD 254
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G LH + LK NG + +++MY+ GS +
Sbjct: 255 ALVEGKCLHG-------------------LALK---NGFLCFEVVKSTILSMYSRCGSPE 292
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
+A F + ++++ISW +I+ S+ G++ +
Sbjct: 293 EAYRCFCKLDQKDLISWTSIIAVHSKFGLMSE 324
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 157/369 (42%), Gaps = 62/369 (16%)
Query: 34 IDDDYRVFCDIGPRYLFTYN-TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKS 92
+++ R+F + +F + TM++ + C VG +++ LH + + F ++A +
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATA 272
Query: 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR 152
+DM+ KCG + A + +F M +D+++W MIS +
Sbjct: 273 LVDMYGKCGEIRSARA----------------------IFDSMKNKDVMTWTAMISAYAQ 310
Query: 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212
F+++ ++G + + + S A L+ G H+ + +DV +
Sbjct: 311 ANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVIL 370
Query: 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272
+ LIDM YA+ G A F R++ +W V+++
Sbjct: 371 KTALIDM----------------------YAKCGDISGAQRLFSEAIDRDICTWNVMMAG 408
Query: 273 FSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAK----FT 315
+ G EK F F+ L CSH+G V +GK F M
Sbjct: 409 YGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVP 468
Query: 316 YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ CMVDLLG +GLL EA K+I+ MP P IWGA+L AC H N+ + EL R L
Sbjct: 469 KVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAAREL 528
Query: 376 LQLDVKVFG 384
L L+ + G
Sbjct: 529 LALEPQNCG 537
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 132/326 (40%), Gaps = 40/326 (12%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + +M +HG K VSD + + + M+ +CG++ A F +M + W
Sbjct: 119 CSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSW 178
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
I + +F +R +VSW MI+ R E F+ + + + +
Sbjct: 179 STMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSL 238
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ V ++ G LH+ ++ + + + + L+DMY KCG I+ +A+
Sbjct: 239 IISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCG------EIRSARAI--- 289
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
F+ M +++++W +ISA++QA ++ F
Sbjct: 290 -------------FDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTM 336
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPS 345
VSLLS C+ +G + GK + + K + ++D+ G + A++L E
Sbjct: 337 VSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAID 396
Query: 346 KPTCVIWGALLGACCSH-YNTKLAEL 370
+ C W ++ H Y K +L
Sbjct: 397 RDICT-WNVMMAGYGMHGYGEKALKL 421
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 29/221 (13%)
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
L T+ + + S + + A + + G +H V DVFV + L+ M
Sbjct: 94 LNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQM 153
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA------FELMSRRNMISWMVLISAF 273
Y +CG S+ + L +E + + F S+R+++SW +I+ +
Sbjct: 154 YSECG------SLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGY 207
Query: 274 SQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTC 318
+ LE+ F +SL+ C G V GK H + F +
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267
Query: 319 YF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+VD+ G G + A+ + D M +K + W A++ A
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNK-DVMTWTAMISA 307
>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 754
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 152/348 (43%), Gaps = 60/348 (17%)
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
N++++ C VG I + +H K + + S+A S +DM+ K G V
Sbjct: 412 NSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTAT------ 465
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
W+ +F + +RD++SWNT+IS + G E + F ++
Sbjct: 466 --------WR--------IFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVY 509
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + SA A + L+ G +H Y+K NG ES+I
Sbjct: 510 PNKVTCIIVLSACAHLASLDEGEKIHQ--------------------YIKE--NGFESNI 547
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
I AL+ MYA+ G + + F R++I W V+IS + G +E F
Sbjct: 548 TIRTALIDMYAKCGELETSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEES 607
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEA 336
F+SLLS C+H+G V +G+H F M K+ ++ ++DLLG SG L A
Sbjct: 608 NIKPNAQTFLSLLSACNHTGHVLEGRHLFDRMQKYGIEPSLKHYASIIDLLGRSGSLEAA 667
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+ L+ MP P +WG+LL AC H ++ + R ++ D K G
Sbjct: 668 EALVLSMPITPDGTVWGSLLSACKIHNEFEVGVRLARYAIESDPKNDG 715
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 135/341 (39%), Gaps = 59/341 (17%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
Y T+ +G C+ + + LHGL K F+ E + + + M+ +CG+ + A F
Sbjct: 209 NYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCF 268
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
K+ ++DL+SW ++I++ ++ G E L F E+
Sbjct: 269 C----------------------KLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASE 306
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
++ + + + G H+R++ +L + L+ MY K G G +
Sbjct: 307 IIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTAN 366
Query: 231 SI--------QIGKALVTMYAEGGSTQKADLAF----ELMSRR-NMISWMVLISAFSQAG 277
I + ++ Y+ G +K ++F L+ R ++ S + +IS+ SQ G
Sbjct: 367 KIFHSFHKSSEDWSTMILGYSNMGQKEKC-ISFLREMLLLGREPDLNSLVSVISSCSQVG 425
Query: 278 VLEKPRFFFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMV 324
+ R + SL+ SG VT F + + ++
Sbjct: 426 AINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNT-LI 484
Query: 325 DLLGLSGLLGEAKKLIDEM------PSKPTCVIWGALLGAC 359
SG+L EA L D+M P+K TC+I +L AC
Sbjct: 485 SSYKQSGILAEAIILFDKMVKEKVYPNKVTCII---VLSAC 522
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 45/218 (20%)
Query: 71 ALHLHGLVKKF-YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129
+++HGL K FV + +I S I M+ KCG V+ A
Sbjct: 127 GMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESAS---------------------- 164
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
IMF ++ +D+V+W +I ++ L E+ G + + F A +
Sbjct: 165 IMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLD 224
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G LH + LK NG + +++MY+ GS +
Sbjct: 225 ALVEGKCLHG-------------------LALK---NGFLCFEVVKSTILSMYSRCGSPE 262
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
+A F + ++++ISW +I+ S+ G++ + F+
Sbjct: 263 EAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFW 300
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 152/333 (45%), Gaps = 65/333 (19%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131
+H H + + + + +A + ID + K G V YAE +
Sbjct: 377 MHAHAIRRGYGLHTH--VATTLIDCYAKLGIVSYAER----------------------V 412
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL--SSMLYATAFSARASVY 189
F MP+R+LVSW+ MI ++ + + F E+ L +S+ + A A V
Sbjct: 413 FTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVN 472
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G LH+ ++ L V V + L+ MY+KCGC ++ G+ +
Sbjct: 473 ALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGC------LETGRYIFNW-------- 518
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAG-------VLEK-------PRFFFFFVSLLSGC 295
+ RRN++SW LIS + G V E+ P F VS+L C
Sbjct: 519 -------IGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITF-VSVLGAC 570
Query: 296 SHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
SH G V +GK F +M ++ T ++ CMVDLLG +G L EA +LI M +P+ +W
Sbjct: 571 SHVGLVEQGKKLFESMVEYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVW 630
Query: 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
G+LLGAC H + + AE+ +L L+ + G+
Sbjct: 631 GSLLGACRIHGHVEYAEMACSHLFDLEPRNAGN 663
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 30/157 (19%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASV 188
+F + P +++ WN M+ L G E L ++ G + S YA A AS
Sbjct: 306 VFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASA 365
Query: 189 YDLEWGP---HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
L +H+ + L V + LID Y K G + YAE
Sbjct: 366 SHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLG--------------IVSYAE- 410
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
F M RN++SW +I +++ E+P
Sbjct: 411 -------RVFTSMPDRNLVSWSAMIGCYAKN---ERP 437
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 41/233 (17%)
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
GV L G + LH + L + F + S+ + + M++KCG ++
Sbjct: 469 AGVNALGQGKV---LHAYILRRGFDLLV--SVLNALMAMYMKCGCLETGR---------Y 514
Query: 118 LFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML 177
+F W I R R++VSWN++IS HGFG E+L F E+ G + +
Sbjct: 515 IFNW---IGR---------RRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIIT 562
Query: 178 YATAFSARASVYDLEWGPHL---------HSRVVHMEPSLDVFVGSGLIDMYLK-CGCNG 227
+ + A + V +E G L R H +D+ +G +D ++
Sbjct: 563 FVSVLGACSHVGLVEQGKKLFESMVEYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMR 622
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLA----FELMSRRNMISWMVLISAFSQA 276
I+ S Q+ +L+ G + A++A F+L RN ++++L +++A
Sbjct: 623 IQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEP-RNAGNYVLLADIYARA 674
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 157/351 (44%), Gaps = 61/351 (17%)
Query: 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112
+TM++ C +I++ +H + F S+ I + ID+++KCG V+ A
Sbjct: 236 STMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA------ 289
Query: 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
C +F+ + +D++SWNT+I T E L F E+ G
Sbjct: 290 -------CG---------LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ + + A A + +E G +H +Y+ G+ ++
Sbjct: 334 PNDVTMLSILPACAHLGAIEIGRWIH--------------------VYINKRLKGVANAS 373
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
+L+ MYA+ G + A F+ + R++ SW +I F+ G F
Sbjct: 374 SHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKN 433
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLG 334
FV LLS CSHSG + G+H F +M K Y ++ CM+DLLG SGL
Sbjct: 434 EIEPDDITFVGLLSACSHSGMLDLGRHIFRSM-KEDYKITPKLEHYGCMIDLLGHSGLFK 492
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
EA+++I+ M +P VIW +LL AC + N +L E +NL++++ K GS
Sbjct: 493 EAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGS 543
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 92/431 (21%), Positives = 161/431 (37%), Gaps = 109/431 (25%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFL--QLIDDDYRVFCDIGPRY------------- 48
C +L+SL R IHAQ+I T L ++ + +LI+ FC + P +
Sbjct: 12 CKTLQSL---RMIHAQMIKTGLHNTNYALSKLIE-----FCVLSPHFDGLPYAISVFETI 63
Query: 49 ----LFTYNTMINGGV--------------------------------RCLCVGNIKMAL 72
L +NTM G C +
Sbjct: 64 QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQ 123
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KF 123
+HG V K + D + S I M+V+ G ++ A F + + + + K
Sbjct: 124 QIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKG 183
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
I MF ++P +D+VSWN MIS G E L F E+ + S
Sbjct: 184 YIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVS 243
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A +E G +HS ID + G S+++I AL+ +Y
Sbjct: 244 ACAQSASIELGRQVHS----------------WIDDH------GFGSNLKIVNALIDLYI 281
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
+ G + A FE +S +++ISW LI ++ + ++ F +S
Sbjct: 282 KCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLS 341
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK-----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+L C+H G + G+ + K + + ++D+ G + A+++ D + +
Sbjct: 342 ILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILN 401
Query: 346 KPTCVIWGALL 356
+ + W A++
Sbjct: 402 R-SLSSWNAMI 411
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 113/280 (40%), Gaps = 28/280 (10%)
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
G+ + +F+ + E +L+ WNTM L ++ + + G + +
Sbjct: 52 GLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLK 111
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI--------- 234
+ A G +H V+ + LD++V + LI MY++ G +E + ++
Sbjct: 112 SCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNG--RLEDARKVFDQSSHRDV 169
Query: 235 --GKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------ 286
AL+T YA G A F+ + ++++SW +IS +++ G ++ F
Sbjct: 170 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 229
Query: 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKL 339
VS++S C+ S + G+ + + + + L+ L GE +
Sbjct: 230 NVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 289
Query: 340 --IDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+ E S + W L+G K A L+ + +L+
Sbjct: 290 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 329
>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 830
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 192/417 (46%), Gaps = 68/417 (16%)
Query: 4 CGSLKSLPIARKIHAQLISTCLIS--SIFLQLIDDDYRV-----FCDI-----GPRYLFT 51
C +LK L +AR++H+ ++ S ++ L+D + D+ G + + +
Sbjct: 268 CANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVS 327
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE-------SIAKSSI--DMHVKCGA 102
+ MI+G C+ G+I +A L +++ ++ +++++S +H +
Sbjct: 328 WTAMIDG---CIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHAQVIK 384
Query: 103 VDYAESAFLR---MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFET 159
+Y + + M++ S C L +F+ + ++D+VSW+ M++ + G
Sbjct: 385 TNYECTPTVGTALMVSYSKLC---STEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGA 441
Query: 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219
FI++ HG + ++A A AS P+ V +G +
Sbjct: 442 TNAFIKMTMHGLKPNEFTISSAIDACAS------------------PAAGVDLGRQFHAI 483
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
+K C+ ++ + ALV+MYA GS + A FE + R+++SW ++S ++Q G
Sbjct: 484 SIKHRCH---DALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYS 540
Query: 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTC-YFVC 322
+K F F+S++ GC+H+G V +G+ YF M + T T ++ C
Sbjct: 541 QKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYAC 600
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MVDL +G L E LI+ MP IW ALLGAC H N +L +L LL L+
Sbjct: 601 MVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLE 657
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 45/213 (21%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G + + H+H KF S + S ++M+ KCG V+ A
Sbjct: 171 GMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEAR------------------ 212
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
++F +M RD+VSWNT+++ L +G E L F + + L+ Y+T +
Sbjct: 213 ----VVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLC 268
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A++ L LHS V+ +G S + AL+ Y +
Sbjct: 269 ANLKHLGLARQLHSSVLK----------------------HGFHSYGNVMTALMDAYNKA 306
Query: 246 GSTQKADLAFELMS-RRNMISWMVLISAFSQAG 277
G KA F LMS +N++SW +I Q G
Sbjct: 307 GQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNG 339
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/311 (19%), Positives = 126/311 (40%), Gaps = 40/311 (12%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
L G++K V D + K + V+CG D+ + L W ++ +F+
Sbjct: 58 LLGIIKICGSVPDRVLGKQLHALCVRCGH-DHGDIRVGTSLVDMYMNW-HSVLDGRKVFE 115
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
M +R++V+W ++++ + G + + F + G + +++ S AS ++
Sbjct: 116 GMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDL 175
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G H+H++ + VFV + L++MY KCG ++A +
Sbjct: 176 GQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGL----------------------VEEARV 213
Query: 254 AFELMSRRNMISWMVLISAFSQAGV-LEKPRFFF------------FFVSLLSGCSHSGP 300
F M R+M+SW L++ G LE + F + ++++ C++
Sbjct: 214 VFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKH 273
Query: 301 VTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDE---MPSKPTCVIWGALLG 357
+ + +++ K + Y M L+ G+ K +D M V W A++
Sbjct: 274 LGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMID 333
Query: 358 ACCSHYNTKLA 368
C + + LA
Sbjct: 334 GCIQNGDIPLA 344
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 133/342 (38%), Gaps = 68/342 (19%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY+T+IN C + ++ +A LH V K F S ++ + +D + K G +D A F
Sbjct: 260 TYSTVIN---LCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVF 316
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
L M +++VSW MI ++G F + G
Sbjct: 317 LLMSG---------------------SQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDG 355
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ + Y+T + V + + P +H++V+ E
Sbjct: 356 VAPNDLTYSTILT----VSEASFPPQIHAQVIK----------------------TNYEC 389
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE---------- 280
+ +G AL+ Y++ ST++A F+++ +++++SW +++ ++QAG
Sbjct: 390 TPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMT 449
Query: 281 ----KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSGLL 333
KP F ++ + S + V G+ + K C +V + G +
Sbjct: 450 MHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSI 509
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
E + + E + + W ++L H ++ A V R +
Sbjct: 510 -ENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQM 550
>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 944
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 60/345 (17%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM+ C + ++ + LHG ++K F SD + + +DM+ KCG++ E
Sbjct: 503 TMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVE------ 556
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
RL ++ + + +D VSWN MI+ +G+ E + TF +
Sbjct: 557 -------------RLFLLTKHV--KDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRP 601
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+ + + T A + + L H+ ++ M G S
Sbjct: 602 NLVTFVTILPAVSYLSILREAMAFHTCIIRM----------------------GFLSCTL 639
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------ 287
IG +L+ MYA+ G + ++ F M ++ ISW ++SA++ G E F
Sbjct: 640 IGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESN 699
Query: 288 -------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC----YFVCMVDLLGLSGLLGEA 336
++S+LS C HSG + +G F +M + + ++ CMVDLLG +GL E
Sbjct: 700 VRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDEV 759
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
L+++M ++P +WGALL AC H N L E+ + +LL+L+ +
Sbjct: 760 LSLLNKMTTEPDARVWGALLAACKIHSNVTLGEVAVHHLLKLEPR 804
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 133/338 (39%), Gaps = 62/338 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + NI + +H K SD S+ + + M+++ YA
Sbjct: 410 CTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYA--------------- 454
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ +F +M +D+V WNT+I+ T++G L F L G S
Sbjct: 455 -------MTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGL 507
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
FSA A + DL+ G LH + D+ V L+DMY KC
Sbjct: 508 FSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKC------------------ 549
Query: 242 YAEGGSTQKADLAFELMSR-RNMISWMVLISAFSQAGV------------LEKPR-FFFF 287
GS + F L ++ +SW V+I+ + G LE R
Sbjct: 550 ----GSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVT 605
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLLGEAKKLIDEMP 344
FV++L S+ + + + T + + + +C + ++D+ G L ++K EM
Sbjct: 606 FVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEME 665
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382
+K T + W A+L A H +LA + + + +V+V
Sbjct: 666 NKDT-ISWNAMLSAYAMHGQGELAVALFSVMQESNVRV 702
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 117/306 (38%), Gaps = 62/306 (20%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
++ S IDM+ KCG V A+ F RM G+ RD VSW TM++
Sbjct: 235 VSNSLIDMYCKCGDVHSAQRVFDRM----------GV------------RDDVSWATMMA 272
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
++G FE L ++ ++ + A A + DLE G +++ + M
Sbjct: 273 GYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMS 332
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
D+ V + ++ MY KC G +KA F + R++++W
Sbjct: 333 DIVVATPIVCMYAKC----------------------GELKKARELFLSLEGRDLVAWSA 370
Query: 269 LISAFSQAGVLEKPRFFFFFVS-------------LLSGCSHSGPVTKGK--HYFTAMAK 313
+SA + G + F + L+SGC+ + GK H + A
Sbjct: 371 FLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKAD 430
Query: 314 FTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
V +V + L A L + M K V+W L+ + + LA L M
Sbjct: 431 MESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDI-VVWNTLINGFTKYGDPHLA-LEM 488
Query: 373 RNLLQL 378
N LQL
Sbjct: 489 FNRLQL 494
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 72/192 (37%), Gaps = 46/192 (23%)
Query: 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNT 145
D I S IDM K G +D A + +F KMP +D V WN
Sbjct: 133 DVYIGTSLIDMFCKMGCLDNARN----------------------VFDKMPVKDGVCWNA 170
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
MIS L++ E L F + GF + + A + + D+ +H VV
Sbjct: 171 MISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVV--R 228
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265
S+ V + LIDMY KC G A F+ M R+ +S
Sbjct: 229 RSICGVVSNSLIDMYCKC----------------------GDVHSAQRVFDRMGVRDDVS 266
Query: 266 WMVLISAFSQAG 277
W +++ + + G
Sbjct: 267 WATMMAGYVKNG 278
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 150/374 (40%), Gaps = 79/374 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + +H V K SD + + I MH CG + A + F W
Sbjct: 122 CTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAW 181
Query: 122 -----------KFGIIRLLI-----------------------------MFQKMPERDLV 141
G R L +F ++PERD+V
Sbjct: 182 SAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVV 241
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
SWN MIS R G L F ++ G + + SA A DL+ G LHS
Sbjct: 242 SWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHS-- 299
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
L DM+ + G + +G AL+ MYA+ GS + A F M +
Sbjct: 300 -------------SLSDMFSRNGF-----PVVLGNALIDMYAKCGSMKSAHEVFWSMRDK 341
Query: 262 NMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYF 308
++ +W ++ + G VLE F FV++L CSH G V KG+ +F
Sbjct: 342 DVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFF 401
Query: 309 TAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
M + Y ++ CMVD+LG +GLL EA + ID M +P VIW LL AC H
Sbjct: 402 NLM-QHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHG 460
Query: 364 NTKLAELVMRNLLQ 377
+LA+ R LL+
Sbjct: 461 EIELAKHANRQLLK 474
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 57/355 (16%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + +H V K+ S+ + S +D++ K G A+ F M+ + W
Sbjct: 137 CAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSW 196
Query: 122 KF--------GII-RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH--- 169
G++ + ++F M E++LVSW+TMIS R+ E IEL+
Sbjct: 197 NTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARN----EKYADAIELFRQMQH 252
Query: 170 --GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
G + + + SA A + L+ G +H + N
Sbjct: 253 EGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRR----------------------NK 290
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
IE + +G AL MYA+ G +A F M R++ISW ++I + G + FF
Sbjct: 291 IEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFA 350
Query: 288 -------------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLS 330
F+ LL+ C+H+G V KG YF M + ++ C+VDLL +
Sbjct: 351 EMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRA 410
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
G L +A+ LI+ MP +P ++WGALLG C + + + E V+ +L+LD GS
Sbjct: 411 GRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGS 465
>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 147/330 (44%), Gaps = 64/330 (19%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+HG V K ++D + + ++++ + G +DYA AF
Sbjct: 471 EIHGYVFK-RDLADIMLQNAIVNVYGEVGHIDYARRAF---------------------- 507
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+ + +D+VSW +MI+ +G E L F L S+ +A SA A++ L+
Sbjct: 508 ESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLK 567
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H ++ L+ + S L+DMY CG +E+S ++
Sbjct: 568 KGKEIHGFLIRKGFFLEGPIASSLVDMYACCGT--VENSRKM------------------ 607
Query: 253 LAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSG 299
F + +R++I W +I+A G K F F++LL CSHSG
Sbjct: 608 --FHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSG 665
Query: 300 PVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ +GK +F M K+ Y ++ CMVDLL S L EA + MP KP+ IW A
Sbjct: 666 LMVEGKRFFEIM-KYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCA 724
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
LLGAC H N +L EL + LLQ D + G
Sbjct: 725 LLGACHIHSNKELGELAAKELLQSDTENSG 754
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 124/310 (40%), Gaps = 61/310 (19%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+K+ + +HG V K +D +A + I M+ KCG ++ A F S+ C
Sbjct: 264 VKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVF-----ESMLC------- 311
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
RD VSWNT++S L ++ + L F ++ N G + +A
Sbjct: 312 ----------RDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGR 361
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+L G +H+ + NG++S++QIG LV MYA+
Sbjct: 362 SGNLLKGKEVHAYAIR----------------------NGLDSNMQIGNTLVDMYAKCCC 399
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSG 294
+ AFE M +++ISW +I+ ++Q LE F S+L
Sbjct: 400 VKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRA 459
Query: 295 CS--HSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIW 352
CS S + H + +V++ G G + A++ + + SK V W
Sbjct: 460 CSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDI-VSW 518
Query: 353 GALLGACCSH 362
+++ CC H
Sbjct: 519 TSMI-TCCVH 527
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 134/343 (39%), Gaps = 68/343 (19%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFLQLI---------DDDYRVFCDIGPRYLFTYNT 54
C + K+LP +++HA L+ + L + + +L+ D +VF ++ R +F++N
Sbjct: 56 CVAAKALPQGQQLHALLLKSHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNA 115
Query: 55 MINGGVRCLCVGNIKMALHLHGLVKKFYFVSD----ESIAKS---------SIDMH---V 98
++ V G A+ L+ ++ D S+ K+ ++H V
Sbjct: 116 LMGAFVSS---GKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAV 172
Query: 99 KCGAVDYAESAFLRMLNPSLF--CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
KCG Y E F+ +++ C G R+L M + D VSWN++IS G
Sbjct: 173 KCG---YGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNC 229
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
E L F + G ++ + A ++ G +H V+ DV+V + L
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANAL 289
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
I MY KC G + A FE M R+ +SW L+S Q
Sbjct: 290 IAMYAKC----------------------GRMEDAGRVFESMLCRDYVSWNTLLSGLVQN 327
Query: 277 GVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKH 306
+ +F ++L++ SG + KGK
Sbjct: 328 ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKE 370
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/313 (19%), Positives = 117/313 (37%), Gaps = 62/313 (19%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
GN+ +H + S+ I + +DM+ KC V Y AF
Sbjct: 363 GNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAF--------------- 407
Query: 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR 185
+ M E+DL+SW T+I+ ++ F E + F ++ G + M+ + A
Sbjct: 408 -------ECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRAC 460
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ + + +H V + L D+ L+ A+V +Y E
Sbjct: 461 SGLKSRNFIREIHGYVFKRD----------LADIMLQ-------------NAIVNVYGEV 497
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLL 292
G A AFE + ++++SW +I+ G+ + F+ +S L
Sbjct: 498 GHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISAL 557
Query: 293 SGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
S ++ + KGK + F +VD+ G + ++K+ + +
Sbjct: 558 SATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR-DL 616
Query: 350 VIWGALLGACCSH 362
++W +++ A H
Sbjct: 617 ILWTSMINANGMH 629
>gi|125555425|gb|EAZ01031.1| hypothetical protein OsI_23065 [Oryza sativa Indica Group]
Length = 671
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 141/335 (42%), Gaps = 63/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G +++ +H K +F D + + + ++ KCG + +E
Sbjct: 319 CSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSE-------------- 364
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
I+F + +D +SW +++ ++ E L F E+ G S +
Sbjct: 365 --------IVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSV 416
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A ++ L G +HSRVV + G++ + ALVTM
Sbjct: 417 LRACSATSSLSCGWQIHSRVVKL----------------------GVDDDTSVENALVTM 454
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFF 288
YA+ G Q A F R +ISW LI++FSQ G + + F + F
Sbjct: 455 YAKCGVVQVALKIFNSTRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTF 514
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEM 343
V LLS CS G V +G YF M K Y ++ CMVDL +G +A K ID M
Sbjct: 515 VGLLSSCSRMGLVAEGCEYFKQM-KTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAM 573
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P +P ++W ALL +C H N L + + +L++
Sbjct: 574 PCQPDQLVWEALLASCRVHGNLDLGRMAAKKILEI 608
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 125/325 (38%), Gaps = 66/325 (20%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT ++ G C + +H K DES+A + +DM+ KCG V + A
Sbjct: 106 FTVAALVAG---CARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRA 162
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIELWN 168
F+ P+R ++SW +MI+ L HG G+ T I L+
Sbjct: 163 FVL----------------------TPQRSVLSWTSMIACLVNHGDSGYRD--TAIVLFK 198
Query: 169 HGFGLSSMLYATAFSARASVYD----LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224
L FS V+D L G +H +V M +D +G+ L+ MY +CG
Sbjct: 199 KMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCG 258
Query: 225 CNGIESSIQIG----------KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
G++ ++ +L+T YA G +A F M +M
Sbjct: 259 --GMDEITRLACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHM--------PID 308
Query: 275 QAGVLEKPRFFFFFVSLLSGCSHSGP--VTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSG 331
Q+ + SLL CS G V K H + F T +V + G G
Sbjct: 309 QSAI----------TSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCG 358
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALL 356
+ ++ + + + +K T + W ALL
Sbjct: 359 DIASSEIVFNTLENKDT-ISWTALL 382
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG--LSSMLYATAFSARASV 188
+F +MP R++VSW+ +I +R G + L F + G +S A + A
Sbjct: 59 VFDEMPRRNVVSWSVLIVASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARA 118
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
D G +H+ V + D V L+DMY KCG GS+
Sbjct: 119 KDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCG-------------------RVGSS 159
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG 277
+ AF L +R+++SW +I+ G
Sbjct: 160 WR---AFVLTPQRSVLSWTSMIACLVNHG 185
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 36/188 (19%)
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
H H R VH G+ + K GC +S + L+ Y G A F
Sbjct: 18 HSHPRAVH---------GAAV-----KLGC---LASTYLCNNLLLSYQARGHLADARGVF 60
Query: 256 ELMSRRNMISWMVLISAFSQAGVL--------------EKPRFFFFFV-SLLSGCSHSGP 300
+ M RRN++SW VLI A S+ GVL E+ R F V +L++GC+ +
Sbjct: 61 DEMPRRNVVSWSVLIVASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKD 120
Query: 301 VTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
G+ + K +VD+ G +G + + P + + + W +++
Sbjct: 121 AVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQR-SVLSWTSMIA 179
Query: 358 ACCSHYNT 365
+H ++
Sbjct: 180 CLVNHGDS 187
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 148/339 (43%), Gaps = 69/339 (20%)
Query: 64 CVGNIKMAL--HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
CV +++ L LH + + + D S+A ID + KCG + AE F R+ N
Sbjct: 219 CVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGN------ 272
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+++VSW +M++ L ++ E C + + ++
Sbjct: 273 ---------------RKNVVSWCSMLAALVQN-HEEERACMVFLQARKEVEPTDFMISSV 316
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A + LE G +H+ V ++FVGS L+D M
Sbjct: 317 LSACAELGGLELGRSVHALAVKACVEDNIFVGSALVD----------------------M 354
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE----------------KPRFF 285
Y + GS + A+ F + RN+++W +I ++ G ++ +P +
Sbjct: 355 YGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYV 414
Query: 286 FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLI 340
+S+LS CS G V +G F +M + Y +F C+VDLLG SGL+ A + I
Sbjct: 415 TL-ISILSVCSRVGAVERGIQIFESM-RLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFI 472
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
M +PT +WGALLGAC H T+L ++ L +LD
Sbjct: 473 QNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELD 511
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 41/245 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLYATAFSARASVY 189
MF +MP+R+L +WN IS + + + F E L HG +S+ + +A +
Sbjct: 165 MFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHG-EPNSITFCAFLNACVDMV 223
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G LH+ +V DV V +GLID Y KC G
Sbjct: 224 RLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKC----------------------GDIV 261
Query: 250 KADLAFELM-SRRNMISWMVLISAFSQAGVLEKPRFFFF------------FVSLLSGCS 296
A++ F + +R+N++SW +++A Q E+ F S+LS C+
Sbjct: 262 SAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKEVEPTDFMISSVLSACA 321
Query: 297 HSGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
G + G+ + A+ FV +VD+ G G + A+++ E+P + V W
Sbjct: 322 ELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPER-NLVTWN 380
Query: 354 ALLGA 358
A++G
Sbjct: 381 AMIGG 385
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+ AC L L + R +HA + C+ +IF+ I++ +VF ++ R L
Sbjct: 317 LSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNL 376
Query: 50 FTYNTMINGGVRCLCVGNIKMALHL 74
T+N MI G G+I MAL L
Sbjct: 377 VTWNAMIGGYAH---QGDIDMALRL 398
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 48/250 (19%), Positives = 87/250 (34%), Gaps = 38/250 (15%)
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R +V+W ++IS + L F + + + F A A V G +
Sbjct: 71 RTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQI 130
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H + DVFVG DMY K G G ++ F+
Sbjct: 131 HGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNM----------------------FDE 168
Query: 258 MSRRNMISWMVLIS-------------AFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKG 304
M +RN+ +W IS AF + + F + L+ C + G
Sbjct: 169 MPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLG 228
Query: 305 KHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
+ + + Y ++D G G + A+ + + + ++ V W ++L A
Sbjct: 229 RQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQ 288
Query: 362 HYNTKLAELV 371
++ + A +V
Sbjct: 289 NHEEERACMV 298
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/441 (25%), Positives = 177/441 (40%), Gaps = 102/441 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KACG L + + HA ++ S +F+ D +VF + R +
Sbjct: 107 LKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNV 166
Query: 50 FTYNTMI-----NGGV--------RCLCVG---------NIKMALHLHGLVKKFYFV--- 84
++++M+ NG R L G N +H F V
Sbjct: 167 VSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVID 226
Query: 85 ----SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL 140
SD+S+ +++ M+ +CG +D A F +GI+ ++DL
Sbjct: 227 NGLDSDQSVQNAAMGMYARCGRIDVARRFF------------YGIL----------DKDL 264
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
V+W +MI + L F ++ G S+ + A +++ + +H
Sbjct: 265 VAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGV 324
Query: 201 VVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
+ + + + +ID+Y+KCG + + A F+ MS
Sbjct: 325 ITRSFFKNHIALDTAVIDLYVKCG----------------------NLEYARKCFDRMSA 362
Query: 261 RNMISWMVLISA-------------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHY 307
RN+ISW +IS F Q KP F V +LS CSH G + +G
Sbjct: 363 RNLISWSTMISGYGMHGHGREALCLFDQMKASIKPDHIAF-VMVLSACSHGGLIAEGWEC 421
Query: 308 FTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
F AM + T ++ CMVDLLG +G L EA+ I+ MP P +WGALLGAC H
Sbjct: 422 FKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHS 481
Query: 364 NTKLAELVMRNLLQLDVKVFG 384
N + AE R+L LD + G
Sbjct: 482 NLETAETAARHLFNLDAENPG 502
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 22/145 (15%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN +I + +L + + G ++ + A + D E G H+ VV
Sbjct: 68 WNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVV 127
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
DVFV + L+ MY + GC + S Q+ FE M RN
Sbjct: 128 VFGYESDVFVANSLMAMYGRFGC--FDFSRQV--------------------FERMPERN 165
Query: 263 MISWMVLISAFSQAGVLEKPRFFFF 287
++SW ++ A++ G E+ F+
Sbjct: 166 VVSWSSMVGAYAHNGRYEEGLLLFW 190
>gi|15223858|ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77170
gi|332197823|gb|AEE35944.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 147/325 (45%), Gaps = 50/325 (15%)
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAV--DYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
++K + D ++ K + V+ G V ++ ES F+ +L+C +F +
Sbjct: 123 VIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFI-----TLYCKAGEFENARKVFDE 177
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
PER L SWN +I L G E + F+++ G + ++ + DL
Sbjct: 178 NPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLA 237
Query: 195 PHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
LH V+ E D+ + + LIDMY KCG + S I
Sbjct: 238 FQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASHI-------------------- 277
Query: 253 LAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSG 299
FE M +RN++SW +I ++ G LE F FV +LS C H G
Sbjct: 278 --FEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGG 335
Query: 300 PVTKGKHYFTAMAKFTYT-----CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
V +GK YF AM K + ++ C+VDLL G L EAKK+++EMP KP ++WG
Sbjct: 336 LVEEGKTYF-AMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGC 394
Query: 355 LLGACCSHYNTKLAELVMRNLLQLD 379
L+G C + ++AE V +++L+
Sbjct: 395 LMGGCEKFGDVEMAEWVAPYMVELE 419
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 24/133 (18%)
Query: 54 TMINGGVRCLCVGNIKMALHLHG--LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
TM++ C +G++ +A LH L K SD + S IDM+ KCG +D A
Sbjct: 220 TMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASH--- 276
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+F++M +R++VSW++MI +G E L F ++ G
Sbjct: 277 -------------------IFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGV 317
Query: 172 GLSSMLYATAFSA 184
+ + + SA
Sbjct: 318 RPNKITFVGVLSA 330
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 165/386 (42%), Gaps = 74/386 (19%)
Query: 19 QLISTCLISSI----FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHL 74
Q++ L+S FL+L + + F + + +N M++G G +A +
Sbjct: 374 QMVQNALLSMYCKFGFLKLAE---KFFGRVNEQNFEAWNLMVSG------YGATHLARSI 424
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H + K + S+ S IDM+ K G + A F R+
Sbjct: 425 HCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRI--------------------- 463
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
RD+V+WNT+IS G E L + ++ +S + SA + + LE G
Sbjct: 464 --PRDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLASLEEG 521
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H+ + + ++ + + LIDMY KC G +K+
Sbjct: 522 EKVHNYINGGKFEFNLSIATALIDMYAKC----------------------GQLEKSREI 559
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPV 301
F M R++I+W V+IS + G FF F+++LS C+H+G V
Sbjct: 560 FNSMHERDVITWNVMISGYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLV 619
Query: 302 TKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+GK+ F M ++ ++ CMVDLLG SG L EA+ L+ MP P +WGALL +
Sbjct: 620 KEGKYLFGKMQDYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSS 679
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFG 384
C H ++ + ++ + DV+ G
Sbjct: 680 CKIHNEIEMGIRIAKHAIDSDVENDG 705
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 84/397 (21%), Positives = 155/397 (39%), Gaps = 93/397 (23%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
+ T+ G C +G + LHGLV K + + + M+ KCG + A +F
Sbjct: 237 NFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSF 296
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL---- 166
+LN +D++SW +MIS +R G+ E + F E+
Sbjct: 297 CEVLN----------------------KDIISWTSMISAYSRMGWATECIDMFWEMLVSG 334
Query: 167 -WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG- 224
+ G +S ML ++FS V++ H ++ +LD V + L+ MY K G
Sbjct: 335 IYPDGIVISCML--SSFSNSMRVFE---AKAFHGLIIRRHYTLDQMVQNALLSMYCKFGF 389
Query: 225 ------------------------------------C----NGIESSIQIGKALVTMYAE 244
C N ++ ++ + +L+ MY +
Sbjct: 390 LKLAEKFFGRVNEQNFEAWNLMVSGYGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGK 449
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAG------------VLE--KPRFFFFFVS 290
G+ A F + R++++W LIS+++ G VLE KP VS
Sbjct: 450 SGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPN-SATLVS 507
Query: 291 LLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKP 347
+LS CSH + +G+ H + KF + ++D+ G L +++++ + M +
Sbjct: 508 VLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERD 567
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
+ W ++ H + + A + + + K G
Sbjct: 568 V-ITWNVMISGYGMHGDARSAIEFFQQMEESSAKPNG 603
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 48/208 (23%)
Query: 74 LHGLVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+HGLV K S S SS + M+ KCG ++ A +G+ F
Sbjct: 155 IHGLVSKLGLFSGSSAVGSSFVYMYSKCGVLEEA----------------YGV------F 192
Query: 133 QKMPERDLVSWNTMISILTRHG---FGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++ RD+V+W ++ ++G G E LC + G + F A ++
Sbjct: 193 DEILFRDVVAWTALVIGCVQNGESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLG 252
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G LH VV V S L+ MY KCG + +
Sbjct: 253 ALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCG----------------------NPE 290
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAG 277
+A +F + +++ISW +ISA+S+ G
Sbjct: 291 EAHRSFCEVLNKDIISWTSMISAYSRMG 318
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 156/343 (45%), Gaps = 52/343 (15%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN---PSLFCWKF 123
++ M + +HG V K VSD+ ++ + IDM+ KC F +M + S + F
Sbjct: 265 DLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIF 324
Query: 124 GIIR------LLIMFQKMPER----DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
G+ R L +F+++ ++ ++VSW +MI+ +++G E L F E+ G
Sbjct: 325 GLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKP 384
Query: 174 SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQ 233
+S+ A ++ L G H + S DV+VGS LID
Sbjct: 385 NSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALID--------------- 429
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------- 286
MYA+ G Q + + F+ + +N++ W +I+ ++ G ++ F
Sbjct: 430 -------MYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSG 482
Query: 287 ------FFVSLLSGCSHSGPVTKGKHYFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEA 336
F +LS CS SG +G +YF +M+ K+ ++ CMV LL +G L +A
Sbjct: 483 QKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQA 542
Query: 337 KKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+I MP P +WGALL +C H N L E+ L +L+
Sbjct: 543 YAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELE 585
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/391 (23%), Positives = 154/391 (39%), Gaps = 48/391 (12%)
Query: 40 VFCDIGPRYLFTYNTMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
F + R L N ++ V+ C + +K A +HG+ F SD + S + M++
Sbjct: 101 TFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYI 160
Query: 99 KCGAVDYAESAFLRMLNPSLFCW--------KFGII-RLLIMFQKMPER----DLVSWNT 145
KC + A F RM P + W + G + +F +M + +L+SWN
Sbjct: 161 KCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNG 220
Query: 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205
MI+ G E + F+++ GF ++ A + DL G +H V+
Sbjct: 221 MIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG 280
Query: 206 PSLDVFVGSGLIDMYLKCGCNGIESSI-------QIG--KALVTMYAEGGSTQKADLAFE 256
D V S LIDMY KC C S + +G A + + G + + F
Sbjct: 281 LVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFR 340
Query: 257 LMSRR----NMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSG 299
+ + N++SW +I+ SQ G +E F LL C +
Sbjct: 341 QLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIA 400
Query: 300 PVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ GK H F+ + Y ++D+ G + ++ D +P+K V W A++
Sbjct: 401 ALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK-NLVCWNAVI 459
Query: 357 GACCSHYNTKLA----ELVMRNLLQLDVKVF 383
H K A +L+ R+ + D+ F
Sbjct: 460 AGYAMHGKAKEAMEIFDLMQRSGQKPDIISF 490
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 17/172 (9%)
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+PE ++ S++T+I ++ L TF ++ G + + +A A A + L+
Sbjct: 74 VPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPA 133
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI-----------ESSIQIGKALVTMYA 243
+H D FV S L+ MY+K CN I E + ALV YA
Sbjct: 134 RQVHGIASVSGFDSDSFVQSSLVHMYIK--CNQIRDAHRVFDRMFEPDVVSWSALVAAYA 191
Query: 244 EGGSTQKADLAFELMS----RRNMISWMVLISAFSQAGVLEKPRFFFFFVSL 291
G +A F M + N+ISW +I+ F+ +G+ + F + L
Sbjct: 192 RQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHL 243
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 147/330 (44%), Gaps = 48/330 (14%)
Query: 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI---------MF 132
+ SD ++ S + ++ CG V A S F M + W I + +F
Sbjct: 108 HVASDAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELF 167
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
MPER++VSW T+I + + + F + G + + +A + ++
Sbjct: 168 DAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVD 227
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G +H VV ++ + + +IDMY+KCGC IE ++++
Sbjct: 228 LGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGC--IEKAVEV------------------ 267
Query: 253 LAFELMSRRNMISWMVLISAFSQAGV-LEKPRFF------------FFFVSLLSGCSHSG 299
FE M +++++W LI+ F+ G+ L+ F F+++LS CSH G
Sbjct: 268 --FEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVG 325
Query: 300 PVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G+ YF M ++ CMVDLLG +G L EA+ L+ MP K IWGAL
Sbjct: 326 LTDLGRWYFNIMVSQYRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGAL 385
Query: 356 LGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
L A +H + L E + +L++L+ G+
Sbjct: 386 LAAARTHGDAGLGEQALLHLIELEPNNSGN 415
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/415 (25%), Positives = 165/415 (39%), Gaps = 94/415 (22%)
Query: 32 QLIDDDYRVFCDI-----GPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD 86
L DD VF D+ P + +TY ++ C C N+++ L LHG V K +
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDH-YTYPCVLKA---CSCSDNLRIGLQLHGAVFKVGLDLN 167
Query: 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF----------------------- 123
+ I ++ KCG + A M + + W
Sbjct: 168 LFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDG 227
Query: 124 -----------------------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
++ + MF + ++ LVSWN MIS+ ++ +++
Sbjct: 228 VRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSV 287
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
++++ ++ A+ A + L G +H V + ++ + + LIDMY
Sbjct: 288 DLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMY 347
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+CGC + A F+ M R++ SW LISA+ G
Sbjct: 348 ARCGC----------------------LEDAKRVFDRMKFRDVASWTSLISAYGMTGQGY 385
Query: 281 KPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMA---KFTYTC-YFVCM 323
F FV++LS CSHSG + +GK YF M K T +F C+
Sbjct: 386 NAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACL 445
Query: 324 VDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
VDLLG SG + EA +I +MP KP +WGALL +C + N + L LLQL
Sbjct: 446 VDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQL 500
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 104/290 (35%), Gaps = 63/290 (21%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +PER+++ +N MI + + L F ++ + GF Y A + +
Sbjct: 89 VFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDN 148
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC-----------------------NG 227
L G LH V + L++FVG+GLI +Y KCGC G
Sbjct: 149 LRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAG 208
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLA-----------------------FELMSRRNMI 264
++Q AL G QK D F + +++++
Sbjct: 209 YAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLV 268
Query: 265 SWMVLISAFS-------------QAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK--HYFT 309
SW V+IS + Q G E S+L C + G+ H +
Sbjct: 269 SWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYV 328
Query: 310 AMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
K ++D+ G L +AK++ D M + W +L+ A
Sbjct: 329 ERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVAS-WTSLISA 377
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 150/374 (40%), Gaps = 79/374 (21%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + +H V K SD + + I MH CG + A + F W
Sbjct: 92 CTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAW 151
Query: 122 -----------KFGIIRLLI-----------------------------MFQKMPERDLV 141
G R L +F ++PERD+V
Sbjct: 152 SAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVV 211
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
SWN MIS R G L F ++ G + + SA A DL+ G LHS
Sbjct: 212 SWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHS-- 269
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
L DM+ + G + +G AL+ MYA+ GS + A F M +
Sbjct: 270 -------------SLSDMFSRNGF-----PVVLGNALIDMYAKCGSMKSAHEVFWSMRDK 311
Query: 262 NMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSGPVTKGKHYF 308
++ +W ++ + G VLE F FV++L CSH G V KG+ +F
Sbjct: 312 DVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFF 371
Query: 309 TAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
M + Y ++ CMVD+LG +GLL EA + ID M +P VIW LL AC H
Sbjct: 372 NLM-QHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHG 430
Query: 364 NTKLAELVMRNLLQ 377
+LA+ R LL+
Sbjct: 431 EIELAKHANRQLLK 444
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/318 (19%), Positives = 119/318 (37%), Gaps = 65/318 (20%)
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
S +L S + I ++F ++P D +NT+I + + + +
Sbjct: 11 SELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRML 70
Query: 168 NHGFGL----SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
G G + + A ++ + G +H+ VV D FV + LI M+ C
Sbjct: 71 RRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASC 130
Query: 224 GCNGIESSIQIGKA----------------------------------------LVTMYA 243
G GI +++ G+A ++T YA
Sbjct: 131 GNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYA 190
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAG--------------VLEKPRFFFFFV 289
+ G A F+ + R+++SW V+IS + + G + EKP +
Sbjct: 191 KRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPD-IVTML 249
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAK-FTYTCYFV----CMVDLLGLSGLLGEAKKLIDEMP 344
SLLS C+ SG + G+ ++++ F+ + V ++D+ G + A ++ M
Sbjct: 250 SLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMR 309
Query: 345 SKPTCVIWGALLGACCSH 362
K W +++G H
Sbjct: 310 DKDVST-WNSIVGGLALH 326
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/439 (23%), Positives = 181/439 (41%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC +K+L ++HA ++ + S+ F++ I VF + R +
Sbjct: 128 LKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSI 187
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
+N+M++G + C + N+++ +
Sbjct: 188 VAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEY 247
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ + ++ S IDM+ KCG VD A +F +M +
Sbjct: 248 IVSKGLRRNNTLTTSLIDMYAKCGQVDTARK----------------------LFDEMDK 285
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
RD+V+W+ MIS + E L F E+ + + + + A + E G +
Sbjct: 286 RDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWV 345
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H + + L V +G+ LID Y KCG I+ S+++ F+
Sbjct: 346 HFYIKKKKMKLTVTLGTQLIDFYAKCGY--IDRSVEV--------------------FKE 383
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
MS +N+ +W LI + G + FF F+ +LS CSH+ V +G
Sbjct: 384 MSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQG 443
Query: 305 KHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
+H F +M + ++ CMVD+LG +G L EA + ID MP P V+W LL +C
Sbjct: 444 RHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCR 503
Query: 361 SHYNTKLAELVMRNLLQLD 379
+H N ++AE + ++ +L+
Sbjct: 504 AHKNIEMAEKSLEHITRLE 522
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 141/348 (40%), Gaps = 64/348 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+++++ C + ++ +H L+ K F S+E + + I M+ CG +
Sbjct: 122 FTFSSVLKA---CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQI------ 172
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
G+ R + F MPER +V+WN+M+S T++G E + F ++
Sbjct: 173 --------------GVARHV--FDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILEL 216
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + A + +LE G + +V + + + LIDMY KCG
Sbjct: 217 RIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCG----- 271
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
+ + L F+ M +R++++W +IS ++QA ++ F
Sbjct: 272 -QVDTARKL----------------FDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEM 314
Query: 288 -----------FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYF-VCMVDLLGLSGLL 333
VS+L C+ G GK H++ K T ++D G +
Sbjct: 315 QKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYI 374
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ ++ EM K W AL+ ++ K+A ++L+ DVK
Sbjct: 375 DRSVEVFKEMSFK-NVFTWTALIQGLANNGEGKMALEFFSSMLENDVK 421
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 179/388 (46%), Gaps = 59/388 (15%)
Query: 35 DDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS- 93
D+ R+F + + L ++N+M+ G R G +++ L F +++ + +
Sbjct: 44 DEARRLFDAMPAKDLVSWNSMLTGYTRN---GEMRLGLQF------FEEMAERDVVSWNL 94
Query: 94 -IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRLLIMFQKMPERDLVSW 143
+D V+ G ++ + F ++ NP+ W +FG I +F +MP R++V+W
Sbjct: 95 MVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAW 154
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
N MI+ ++ E + F+E+ +S+ + T + + L+ L +++ +
Sbjct: 155 NAMIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQMPY 210
Query: 204 M-EPSLDVF--------------VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
+P F VG L + +K +G + + + AL+TMYA+ GS
Sbjct: 211 RNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMK---SGYATDLFVSNALITMYAKCGSI 267
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGC 295
A+L F+ + +++SW LI+A++ G + F FV +LS C
Sbjct: 268 SSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSAC 327
Query: 296 SHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351
SH G + +G F M + ++ CMVDLLG +G L EA +L+ M I
Sbjct: 328 SHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGI 387
Query: 352 WGALLGACCSHYNTKLAELVMRNLLQLD 379
WGALLGAC H N +LA+ LL+ +
Sbjct: 388 WGALLGACRIHGNLELAKFAAEKLLEFE 415
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVS----- 290
A+V YA+ +A F+ M ++++SW +++ +++ G + FF ++
Sbjct: 31 NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVV 90
Query: 291 ----LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
++ G G + +F + T +V M+ G + EA++L D+MP +
Sbjct: 91 SWNLMVDGFVEVGDLNSSWEFFEKIPN-PNTVSWVTMLCGFARFGKIAEARRLFDQMPIR 149
Query: 347 PTCVIWGALLGA 358
V W A++ A
Sbjct: 150 -NVVAWNAMIAA 160
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 156/358 (43%), Gaps = 43/358 (12%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+G + M HG V + F D + S IDM+VK ++ A++ F M N ++F W
Sbjct: 383 LGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSL 442
Query: 125 I------------IRLLIMFQKMP-ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+ +RLL +K + DLV+WN MIS G G E L + + G
Sbjct: 443 VSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGL 502
Query: 172 GLSSMLYATAFSARASVYD----LEWGPHLHSRVVHMEPS-----LDVFVGSGLIDMYLK 222
+ + + S + + L++ + V + L L+ +
Sbjct: 503 TPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKE 562
Query: 223 CGC----NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
C NG + + AL+ MY++ S + A F + + + SW +I F+ G+
Sbjct: 563 IHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGL 622
Query: 279 LEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFV 321
++ F F +LLS C +SG + +G YF +M ++
Sbjct: 623 GKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYC 682
Query: 322 CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
CMVDLLG +G L EA LI MP KP IWGALLG+C H N K AE +NL +L+
Sbjct: 683 CMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLE 740
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 93/232 (40%), Gaps = 35/232 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + A +HG V +F SD S+ I M+ K G ++ A F M N + W
Sbjct: 244 CGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSW 303
Query: 122 KFGIIRLLIM---------FQKMP----ERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
I + F ++ + D+V+WN ++S HG+ E L +
Sbjct: 304 NSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG 363
Query: 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI 228
GF +S + A + + L G H V+ DV+VG+ LIDMY+K
Sbjct: 364 EGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVK------ 417
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
S A F+ M RN+ +W L+S +S G+ E
Sbjct: 418 ----------------NHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE 453
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G++S + + L++MY++ G + A F+ M RN SW +IS+++ G L F
Sbjct: 264 GLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLF 323
Query: 287 F 287
+
Sbjct: 324 Y 324
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 140/341 (41%), Gaps = 61/341 (17%)
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C+ K +H + + DE + + +H K G +D +
Sbjct: 100 ECIFKKEFKTGRRIHAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSH------------- 146
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
I+F + ++ L+SWN MI+ + G E L + E+ G +A+
Sbjct: 147 ---------ILFDDLSKKSLISWNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFAS 197
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
F A A++ LE G H ++ + +V V S L+DMY KC SS+ G +
Sbjct: 198 VFRACATLATLEKGKQAHCVMIKSQIKENVVVNSALMDMYFKC------SSLYDGHRV-- 249
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287
F RN+I+W LIS + Q G + + FF
Sbjct: 250 --------------FNKSLNRNVITWTALISGYGQHGRVAEVLVFFSKMKTEGFRPNYVT 295
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
F++++S CSH G V +G YF +M + ++ MVDLLG +G L EA + +
Sbjct: 296 FLAVISACSHGGLVNEGWEYFMSMTRDYGIQPRGQHYAAMVDLLGRAGRLHEAFEFVQNS 355
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
P VIWGALLGAC H N + + L+ + G
Sbjct: 356 PCGEHSVIWGALLGACRVHGNIDMLRFAAKKYFDLEPENAG 396
>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial-like, partial [Cucumis sativus]
Length = 719
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 156/348 (44%), Gaps = 45/348 (12%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII----- 126
+ +HGLV F D +A S I M+ +C ++D A F M+ + W I
Sbjct: 294 IQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQS 353
Query: 127 ----RLLIMFQKMPERDLVSWNTMISILTRHGFGFE-TLCTFIELWNHGFGLSSMLYATA 181
+ + +F+ MP++D+VSW T+I GF E + FI L+ ++ +
Sbjct: 354 GNLEKAVFLFENMPQKDVVSWTTLIC-----GFASEGRIDEFIGLFQMMPEKDAIAWTAV 408
Query: 182 FSARASVYDLEWGPH-----LHSRVVHMEPSLDVFVGSGLIDMYLKCGCN--------GI 228
S S+ + E H L S + +L + +G L G +
Sbjct: 409 ISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSM 468
Query: 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF- 287
E+ + I +LV+MY++ G+ A F + N++++ +I+ +Q G+ ++ F
Sbjct: 469 ENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTK 528
Query: 288 ------------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSG 331
F+ +LS C H G V +G+ YF M ++ CMVDLL +G
Sbjct: 529 MQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVDLLCRAG 588
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ EA L+ MP P +WGA+LGA +H +AEL +NL +L+
Sbjct: 589 MFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELE 636
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 117/268 (43%), Gaps = 27/268 (10%)
Query: 32 QLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAK 91
++D+ + +F + R +Y TMI G V G MA LH +K VS +
Sbjct: 131 NMVDEAFELFSSMPQRNSVSYATMITGFVHA---GMFDMAEKLHR--EKPVIVSSNVL-- 183
Query: 92 SSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRLLIMFQKMPERDLVS 142
I+ + K G V+ A F M + W + G I+ +F KMP+R++V+
Sbjct: 184 --INGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVT 241
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W MI + F + F+ + G +++ A S G +H V+
Sbjct: 242 WTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVL 301
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALVTMYAEGGSTQKADL 253
+ +D ++ + +I MY +C ++ I +L+T Y + G+ +KA
Sbjct: 302 SLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVF 361
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEK 281
FE M +++++SW LI F+ G +++
Sbjct: 362 LFENMPQKDVVSWTTLICGFASEGRIDE 389
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 41/197 (20%)
Query: 99 KCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLVSWNTMISI 149
+ G + AES F RM N + W I + +F K+P+ ++ S+N MI+
Sbjct: 67 RNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMITA 126
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
R E EL++ +S+ YAT +
Sbjct: 127 YHRRNMVDEAF----ELFSSMPQRNSVSYATMITG------------------------- 157
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
FV +G+ DM K + + I L+ Y++ G + A F+ M+ ++++SW +
Sbjct: 158 -FVHAGMFDMAEK--LHREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSM 214
Query: 270 ISAFSQAGVLEKPRFFF 286
IS + G + + R F
Sbjct: 215 ISGLCRVGKIVEARKLF 231
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL--------EKPRFFFF 287
A++T Y +A F M +RN +S+ +I+ F AG+ EKP
Sbjct: 121 NAMITAYHRRNMVDEAFELFSSMPQRNSVSYATMITGFVHAGMFDMAEKLHREKPVIVSS 180
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
V L++G S G V F MA+ + M+ L G + EA+KL D+MP +
Sbjct: 181 NV-LINGYSKVGRVEDAVRIFDGMAEKDVVSW-SSMISGLCRVGKIVEARKLFDKMPDR- 237
Query: 348 TCVIWGALL 356
V W ++
Sbjct: 238 NVVTWTLMI 246
>gi|357118743|ref|XP_003561109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Brachypodium distachyon]
Length = 535
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 150/333 (45%), Gaps = 81/333 (24%)
Query: 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNT 145
D ++ + + + +CG VD AE +F +M ER++VSW
Sbjct: 154 DTAVYNALLSAYARCGLVDAAEK----------------------LFGEMTERNVVSWTA 191
Query: 146 MISILTRHGFGFETLCTFIELWN-HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
M+S ++G + TF+E+W G + + ++ A A+V +E G +
Sbjct: 192 MVSGYAQNGRHEAAVETFLEMWEGAGVQPNELTVSSVLPACAAVGAMELGTKVEEYARGK 251
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE-LMSRRNM 263
+VFV + L++MY KCG S Q+A F+ + RR++
Sbjct: 252 GHLGNVFVTNALLEMYAKCG----------------------SIQRAWQVFQGIGHRRDL 289
Query: 264 ISWMVLISAFSQAGV-------LEKPRF---------FFF---------------FVSLL 292
SW +I AF+ G+ K R +FF FV ++
Sbjct: 290 CSWNTMIMAFAVHGLWMEALALFHKLRVRISCSNSLVYFFSIPTHMTGVKPDGITFVGVI 349
Query: 293 SGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
C+H G V +GK F +M A F+ ++ CMVDLLG +GLL EA +I MP++P
Sbjct: 350 LACTHGGLVDEGKLIFNSMEADFSINPRIEHYGCMVDLLGRAGLLKEAYSMIISMPAEPD 409
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
VIWGALLGAC H N +LAE + L+ L+ +
Sbjct: 410 AVIWGALLGACSFHGNIELAETAVDKLMYLEPQ 442
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.328 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,752,179,183
Number of Sequences: 23463169
Number of extensions: 228303809
Number of successful extensions: 633579
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5242
Number of HSP's successfully gapped in prelim test: 1097
Number of HSP's that attempted gapping in prelim test: 558459
Number of HSP's gapped (non-prelim): 30585
length of query: 385
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 241
effective length of database: 8,980,499,031
effective search space: 2164300266471
effective search space used: 2164300266471
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 78 (34.7 bits)