BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040338
(385 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 196/453 (43%), Gaps = 94/453 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL--QLID---------DDYRVFCDIGPRYL 49
+ AC L + ++H+ + + +S +++ L+D D RVF ++G R +
Sbjct: 159 LSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNV 218
Query: 50 FTYNTMI-----NGGV---------------------------RCLCVGNIKMALHLHG- 76
++N++I NG C + IK+ +HG
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIR 127
+VK +D ++ + +DM+ KC + A F M ++ +
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+MF KM ER++VSWN +I+ T++G E L F L + +A A A
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG---CNGIESSIQIGKALVTMYAE 244
+ +L G H V LK G +G E I +G +L+ MY +
Sbjct: 399 LAELHLGMQAHVHV-------------------LKHGFKFQSGEEDDIFVGNSLIDMYVK 439
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL--------------EKPRFFFFFVS 290
G ++ L F M R+ +SW +I F+Q G EKP +
Sbjct: 440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITM-IG 498
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LS C H+G V +G+HYF++M + ++ CMVDLLG +G L EAK +I+EMP +
Sbjct: 499 VLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQ 558
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
P VIWG+LL AC H N L + V LL+++
Sbjct: 559 PDSVIWGSLLAACKVHRNITLGKYVAEKLLEVE 591
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 143/342 (41%), Gaps = 52/342 (15%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---FGIIRLL 129
++H V K F ++ I ID + KCG+++ F +M +++ W G+ +L
Sbjct: 41 YVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLG 100
Query: 130 IM------FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+ F+ MPERD +WN+M+S +H E LC F + GF L+ +A+ S
Sbjct: 101 FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLS 160
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A + + D+ G +HS + DV++GS L+DMY KC
Sbjct: 161 ACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKC-------------------- 200
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVS 290
G+ A F+ M RN++SW LI+ F Q G +E F S
Sbjct: 201 --GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLAS 258
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCM----VDLLGLSGLLGEAKKLIDEMPSK 346
++S C+ + G+ + K + + VD+ + EA+ + D MP +
Sbjct: 259 VISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR 318
Query: 347 ----PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
T +I G + A ++ RN++ + + G
Sbjct: 319 NVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAG 360
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 178/380 (46%), Gaps = 69/380 (18%)
Query: 23 TCLISS-IFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF 81
T ++S I +++++ +F + R ++N M+ G V+ ++MA L ++
Sbjct: 285 TAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQG---ERMEMAKELFDVMP-- 339
Query: 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV 141
+ S + I + +CG + A++ +F KMP+RD V
Sbjct: 340 --CRNVSTWNTMITGYAQCGKISEAKN----------------------LFDKMPKRDPV 375
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
SW MI+ ++ G FE L F+++ G L+ +++A S A V LE G LH R+
Sbjct: 376 SWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL 435
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
V FVG+ L+ MY KC GS ++A+ F+ M+ +
Sbjct: 436 VKGGYETGCFVGNALLLMYCKC----------------------GSIEEANDLFKEMAGK 473
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF 308
+++SW +I+ +S+ G E FF V++LS CSH+G V KG+ YF
Sbjct: 474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533
Query: 309 TAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
M + + ++ CMVDLLG +GLL +A L+ MP +P IWG LLGA H N
Sbjct: 534 YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGN 593
Query: 365 TKLAELVMRNLLQLDVKVFG 384
T+LAE + ++ + G
Sbjct: 594 TELAETAADKIFAMEPENSG 613
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 120/342 (35%), Gaps = 111/342 (32%)
Query: 54 TMING-GVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE----- 107
T +NG RC N A + H L + + I KS +KCG D E
Sbjct: 19 TSLNGLKRRC---NNAHGAANFHSLKR----ATQTQIQKSQTKPLLKCGDSDIKEWNVAI 71
Query: 108 SAFLR------------------------MLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143
S+++R M++ L +F + R L F +MPERDLVSW
Sbjct: 72 SSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKL--FDEMPERDLVSW 129
Query: 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203
N MI R N G + L+
Sbjct: 130 NVMIKGYVR---------------NRNLGKARELF------------------------E 150
Query: 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263
+ P DV C N +++ YA+ G A F+ M +N
Sbjct: 151 IMPERDV------------CSWN----------TMLSGYAQNGCVDDARSVFDRMPEKND 188
Query: 264 ISWMVLISAFSQAGVLE------KPRFFFFFVS---LLSGCSHSGPVTKGKHYFTAMAKF 314
+SW L+SA+ Q +E K R + VS LL G + + + +F +M
Sbjct: 189 VSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM-NV 247
Query: 315 TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ ++ SG + EA++L DE P + W A++
Sbjct: 248 RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV-FTWTAMV 288
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 125/320 (39%), Gaps = 44/320 (13%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA--KSSIDM 96
++F ++ R L ++N MI G VR +G + + F + + + + +
Sbjct: 116 KLFDEMPERDLVSWNVMIKGYVRNRNLGKAR---------ELFEIMPERDVCSWNTMLSG 166
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
+ + G VD A S +F +MPE++ VSWN ++S ++
Sbjct: 167 YAQNGCVDDARS----------------------VFDRMPEKNDVSWNALLSAYVQNSKM 204
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR-VVHMEPSLDVFVGSG 215
E F N + L + V ++ ++ R VV + + SG
Sbjct: 205 EEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSG 264
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
ID + + A+V+ Y + ++A F+ M RN +SW +++ + Q
Sbjct: 265 KIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQ 324
Query: 276 AGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDL 326
+E + F + ++++G + G +++ K+ F M K + M+
Sbjct: 325 GERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSW-AAMIAG 383
Query: 327 LGLSGLLGEAKKLIDEMPSK 346
SG EA +L +M +
Sbjct: 384 YSQSGHSFEALRLFVQMERE 403
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
LKCG +S I+ ++ Y G +A F+ M R + +S+ +IS + + G E
Sbjct: 57 LKCG----DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFE 112
Query: 281 KPRFFFFFVS---------LLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSG 331
R F + ++ G + + K + F M + C + M+ +G
Sbjct: 113 LARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERD-VCSWNTMLSGYAQNG 171
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
+ +A+ + D MP K V W ALL A N+K+ E M
Sbjct: 172 CVDDARSVFDRMPEKND-VSWNALLSAYVQ--NSKMEEACM 209
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 185/439 (42%), Gaps = 103/439 (23%)
Query: 18 AQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVR---------------- 61
A+++ C S + + +D +++F + R F++NT+I G
Sbjct: 59 AEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEM 118
Query: 62 -------------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA 102
C G I+ +HGL K+ F DE + + + M+V CG
Sbjct: 119 MSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGF 178
Query: 103 VDYAESAFL--------------RMLNPSLFCWKF---GIIRL------LIMFQKMPERD 139
+ A F R + + W G +RL ++F KM +R
Sbjct: 179 MKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRS 238
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
+VSWNTMIS + +GF + + F E+ + + + A + + LE G LH
Sbjct: 239 VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL 298
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+D +GS LIDMY KCG IE +I + FE +
Sbjct: 299 YAEDSGIRIDDVLGSALIDMYSKCGI--IEKAIHV--------------------FERLP 336
Query: 260 RRNMISWMVLISAFS----------------QAGVLEKPRFFFFFVSLLSGCSHSGPVTK 303
R N+I+W +I+ F+ QAGV +++LL+ CSH G V +
Sbjct: 337 RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD---VAYINLLTACSHGGLVEE 393
Query: 304 GKHYFTAMAKFT----YTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G+ YF+ M ++ CMVDLLG SGLL EA++ I MP KP VIW ALLGAC
Sbjct: 394 GRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGAC 453
Query: 360 CSHYNTKLAELVMRNLLQL 378
N ++ + V L+ +
Sbjct: 454 RMQGNVEMGKRVANILMDM 472
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 167/364 (45%), Gaps = 45/364 (12%)
Query: 39 RVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHV 98
R+ C P +T+ +++ C + + +H + K + +D S I+ +
Sbjct: 105 RMLCSSAPHNAYTFPSLLKA---CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYA 161
Query: 99 KCGAVDYAESAFLRMLNPSLFCW--------KFGIIRL-LIMFQKMPERDLVSWNTMISI 149
G A F R+ P W K G + + L +F+KM E++ +SW TMIS
Sbjct: 162 VTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISG 221
Query: 150 LTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ E L F E+ N ++ A A SA A + LE G +HS + +D
Sbjct: 222 YVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMD 281
Query: 210 VFVGSGLIDMYLKCG---------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260
+G LIDMY KCG N + S+Q AL++ YA G ++A F M +
Sbjct: 282 SVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQK 341
Query: 261 RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-- 318
+ KP F ++L+ CS++G V +GK F +M + Y
Sbjct: 342 MGI-----------------KPNVITF-TAVLTACSYTGLVEEGKLIFYSMER-DYNLKP 382
Query: 319 ---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNL 375
++ C+VDLLG +GLL EAK+ I EMP KP VIWGALL AC H N +L E + L
Sbjct: 383 TIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEIL 442
Query: 376 LQLD 379
+ +D
Sbjct: 443 IAID 446
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 175/382 (45%), Gaps = 62/382 (16%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D+ +F ++ R + T+ TM+ G + V + +K + V E S
Sbjct: 188 VDEAREIFDEMSERSVITWTTMVTGYGQNNRVDD----------ARKIFDVMPEKTEVSW 237
Query: 94 IDM---HVKCGAVDYAESAFLRM-LNPSLFC--------WKFGIIRLLIMFQKMPERDLV 141
M +V+ G ++ AE F M + P + C K I + +F M ER+
Sbjct: 238 TSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA 297
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
SW T+I I R+GF E L FI + G + + S AS+ L G +H+++
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
V + +DV+V S L+ MY+KCG LV K+ L F+ +
Sbjct: 358 VRCQFDVDVYVASVLMTMYIKCG------------ELV----------KSKLIFDRFPSK 395
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHY 307
++I W +IS ++ G+ E+ F FV+ LS CS++G V +G
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKI 455
Query: 308 FTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363
+ +M T ++ CMVD+LG +G EA ++ID M +P +WG+LLGAC +H
Sbjct: 456 YESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHS 515
Query: 364 NTKLAELVMRNLLQLDVKVFGS 385
+AE + L++++ + G+
Sbjct: 516 QLDVAEFCAKKLIEIEPENSGT 537
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/380 (20%), Positives = 141/380 (37%), Gaps = 83/380 (21%)
Query: 23 TCLISSIFLQLIDDDYRVFCDIGP-RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF 81
+++ F L+ D R D P R + ++N +++G ++ G I A + L+ +
Sbjct: 52 NSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKN---GEIDEARKVFDLMPER 108
Query: 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV 141
VS ++ K +V G VD AES +F KMPE++ V
Sbjct: 109 NVVSWTALVKG----YVHNGKVDVAES----------------------LFWKMPEKNKV 142
Query: 142 SWNTMISILTRHGFGFETLCTFIELW--NHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
SW M+ + G + C E+ +SM++ R +
Sbjct: 143 SWTVMLIGFLQDG-RIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVD----------EA 191
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
R + E S E S+ +VT Y + A F++M
Sbjct: 192 REIFDEMS---------------------ERSVITWTTMVTGYGQNNRVDDARKIFDVMP 230
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFFFFV---------SLLSGCSHSGPVTKGKHYFTA 310
+ +SW ++ + Q G +E F + +++SG G + K + F +
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDS 290
Query: 311 MAKFTYTCYFVCMVDLLGLSGLLGEAKK---LIDEMPSKPTCVIWGALLGACCS----HY 363
M K + ++ + +G EA L+ + +PT ++L C S H+
Sbjct: 291 M-KERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHH 349
Query: 364 NTKLAELVMRNLLQLDVKVF 383
++ ++R Q DV V+
Sbjct: 350 GKQVHAQLVR--CQFDVDVY 367
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 17/174 (9%)
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
P + R+ H+ + L D C+ SI ++V Y + A
Sbjct: 18 PTANVRITHLSRIGKIHEARKLFD-----SCDS--KSISSWNSMVAGYFANLMPRDARKL 70
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGK 305
F+ M RN+ISW L+S + + G +++ R F + +L+ G H+G V +
Sbjct: 71 FDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAE 130
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
F M + + V ++ L G + +A KL + +P K + G C
Sbjct: 131 SLFWKMPEKNKVSWTVMLIGFLQ-DGRIDDACKLYEMIPDKDNIARTSMIHGLC 183
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 162/349 (46%), Gaps = 54/349 (15%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + ++ A HG+ K ++ + + +DM+ KCG V + F + S+ W
Sbjct: 121 CAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSW 180
Query: 122 KF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-WNHGF 171
G+ R +F +MPER+ V+W M++ GF E L E+ + G
Sbjct: 181 TVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGH 240
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL-------DVFVGSGLIDMYLKCG 224
GL+ + + SA A +L G +H + E + DV VG+ L+DMY KCG
Sbjct: 241 GLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCG 300
Query: 225 CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG------- 277
I+SS+ + F LM +RN+++W L S + G
Sbjct: 301 --NIDSSMNV--------------------FRLMRKRNVVTWNALFSGLAMHGKGRMVID 338
Query: 278 -----VLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGL 329
+ E F ++LS CSHSG V +G F ++ + ++ CMVDLLG
Sbjct: 339 MFPQMIREVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRFYGLEPKVDHYACMVDLLGR 398
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+GL+ EA+ L+ EMP P V+ G+LLG+C H ++AE + R L+Q+
Sbjct: 399 AGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQM 447
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 36/272 (13%)
Query: 131 MFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
+F ++P E+D V W T++S +R+G ++ F+E+ + + F A +
Sbjct: 65 LFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKL 124
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG---------IESSIQIGKALV 239
DL + H V M V V + L+DMY KCG E S+ ++
Sbjct: 125 EDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVL 184
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFF 285
+ ++ F M RN ++W V+++ + AG VLE F
Sbjct: 185 DTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNF 244
Query: 286 FFFVSLLSGCSHSGPVTKGK--HYFT--------AMAKFTYTCYFVCMVDLLGLSGLLGE 335
S+LS C+ SG + G+ H + A + +VD+ G +
Sbjct: 245 VTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDS 304
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKL 367
+ + M K V W AL H ++
Sbjct: 305 SMNVFRLM-RKRNVVTWNALFSGLAMHGKGRM 335
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 135/279 (48%), Gaps = 41/279 (14%)
Query: 119 FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178
F K I + + +F MPE+D ++W MIS +G+ E LC F ++ +S +
Sbjct: 382 FSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTF 441
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
++ SA AS+ DL G +H RVV M D+ V + L+ MY KC
Sbjct: 442 SSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKC--------------- 486
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286
G+T A F +S N++S+ +IS +S G +K F
Sbjct: 487 -------GNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLI 340
F++LLS C H G V G YF +M K +Y ++ CMVDLLG SGLL +A LI
Sbjct: 540 VTFLALLSACVHVGYVDLGWKYFKSM-KSSYNIEPGPDHYACMVDLLGRSGLLDDASNLI 598
Query: 341 DEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MP KP +WG+LL A +H LAEL + L++L+
Sbjct: 599 STMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELE 637
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 123/332 (37%), Gaps = 49/332 (14%)
Query: 38 YRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVK-KFYFVSDESIAKSSIDM 96
Y +FCDI + +Y TMI G VR G A L+ KF D + +
Sbjct: 133 YELFCDIPEKNAVSYATMITGFVRA---GRFDEAEFLYAETPVKF---RDSVASNVLLSG 186
Query: 97 HVKCGAVDYAESAFLRMLNPSL---------FCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+++ G + A F M + +C I+ +F +M ER++++W MI
Sbjct: 187 YLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMI 246
Query: 148 SILTRHGFGFETLCTFIELWNHG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
+ GF + F+ + G ++S A F A G +H V M
Sbjct: 247 DGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPL 306
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISW 266
D+F +G +L++MY++ G +A F +M ++ +SW
Sbjct: 307 EFDLF----------------------LGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSW 344
Query: 267 MVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317
LI+ Q + + F + ++ G S G ++K F M +
Sbjct: 345 NSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
+ M+ +G EA +M K C
Sbjct: 405 TW-TAMISAFVSNGYYEEALCWFHKMLQKEVC 435
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCW---------KFGIIRLLIMFQKMPERDLV 141
S I H + G + AE+ F +M N S+ W + + +F +MP R
Sbjct: 54 NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113
Query: 142 SWNTMISILTRH----GFGFETLCTFIELWNHGFGLSSMLYATAFSA--RASVYDLEWGP 195
S+N MI+ + ++ G +E C E +++ YAT + RA +D
Sbjct: 114 SYNAMITAMIKNKCDLGKAYELFCDIPE-------KNAVSYATMITGFVRAGRFD----- 161
Query: 196 HLHSRVVHMEPSL---DVFVGSGLIDMYLKCGCNGIESSIQIGKA---------LVTMYA 243
+ ++ E + D + L+ YL+ G + G A +V Y
Sbjct: 162 --EAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYC 219
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
+ G A F+ M+ RN+I+W +I + +AG E
Sbjct: 220 KMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFE 256
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 44/164 (26%)
Query: 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI 130
L +HG V K V+D S+ S + M+ KCG + A
Sbjct: 457 GLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYK---------------------- 494
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG---FGLSSMLYATA------ 181
+F + E ++VS+NTMIS + +GFG + L F L + G G++ + +A
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554
Query: 182 -------FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218
F + S Y++E GP H +D+ SGL+D
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPD------HYACMVDLLGRSGLLD 592
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298
++ +A G+ Q+A+ F MS R+++SW+ +ISA+++ G + K F + + S++
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYN 116
Query: 299 GPVTK--------GKHY--FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+T GK Y F + + Y M+ +G EA+ L E P K
Sbjct: 117 AMITAMIKNKCDLGKAYELFCDIPEKNAVSY-ATMITGFVRAGRFDEAEFLYAETPVK 173
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 109/455 (23%), Positives = 192/455 (42%), Gaps = 92/455 (20%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQL-----------IDDDYRVFCDIGPRYL 49
+KA + SL + + +H + + + S +F+ +D +VF I + +
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++N+MING V+ C + N++ +
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI------- 130
+++ + ++A + +DM+ KCG+++ A+ F M W + I
Sbjct: 258 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 317
Query: 131 --MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW-NHGFGLSSMLYATAFSARAS 187
+ MP++D+V+WN +IS ++G E L F EL L+ + + SA A
Sbjct: 318 REVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQ 377
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
V LE G +HS Y+K +GI + + AL+ MY++ G
Sbjct: 378 VGALELGRWIHS--------------------YIKK--HGIRMNFHVTSALIHMYSKCGD 415
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSG 294
+K+ F + +R++ W +I + G + F+ F ++
Sbjct: 416 LEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCA 475
Query: 295 CSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CSH+G V + + F M ++ C+VD+LG SG L +A K I+ MP P+
Sbjct: 476 CSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS 535
Query: 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+WGALLGAC H N LAE+ LL+L+ + G+
Sbjct: 536 VWGALLGACKIHANLNLAEMACTRLLELEPRNDGA 570
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 105/272 (38%), Gaps = 50/272 (18%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS------A 184
+F ++P+ + +WNT+I ++ F+++ + S Y ++ A
Sbjct: 86 VFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVS-----ESQCYPNKYTFPFLIKA 140
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A V L G LH V DVFV + LI Y CG ++S+ ++
Sbjct: 141 AAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCG--DLDSACKV---------- 188
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
F + ++++SW +I+ F Q G +K F V +
Sbjct: 189 ----------FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGV 238
Query: 292 LSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPT 348
LS C+ + G+ + + + M+D+ G + +AK+L D M K
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 298
Query: 349 CVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
V W +L + + A V+ ++ Q D+
Sbjct: 299 -VTWTTMLDGYAISEDYEAAREVLNSMPQKDI 329
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 135/308 (43%), Gaps = 61/308 (19%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148
+ S +DM+ KC + AE ++F+ +P+R VSW +IS
Sbjct: 388 VGNSLVDMYAKCEMFEEAE----------------------LIFKSLPQRTTVSWTALIS 425
Query: 149 ILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208
+ G L F ++ +AT A AS L G LH+ ++
Sbjct: 426 GYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE 485
Query: 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV 268
+VF GSGL+DMY KCG I+ ++Q+ FE M RN +SW
Sbjct: 486 NVFSGSGLVDMYAKCG--SIKDAVQV--------------------FEEMPDRNAVSWNA 523
Query: 269 LISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKF- 314
LISA + G E F + +L+ CSH G V +G YF AM+
Sbjct: 524 LISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIY 583
Query: 315 ---TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
++ CM+DLLG +G EA+KL+DEMP +P ++W ++L AC H N LAE
Sbjct: 584 GITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERA 643
Query: 372 MRNLLQLD 379
L ++
Sbjct: 644 AEKLFSME 651
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 39/250 (15%)
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
++ ++F +MPE D VS+N +IS ++ +L F E+ GF + +AT S
Sbjct: 301 VLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSI 360
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ L+ G LH + + + VG+ L+DMY KC M+ E
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKC----------------EMFEE 404
Query: 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSL 291
A+L F+ + +R +SW LIS + Q G+ F F ++
Sbjct: 405 ------AELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATV 458
Query: 292 LSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPT 348
L + + GK H F + + +VD+ G + +A ++ +EMP +
Sbjct: 459 LKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDR-N 517
Query: 349 CVIWGALLGA 358
V W AL+ A
Sbjct: 518 AVSWNALISA 527
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 39/243 (16%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F+++PE+D V++NT+I+ + G E++ F+++ G S ++ A ++
Sbjct: 205 VLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLH 264
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
D G LH+ V S D VG+ ++D Y K + L T
Sbjct: 265 DFALGQQLHALSVTTGFSRDASVGNQILDFYSKHD-----------RVLETR-------- 305
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCS 296
+ F+ M + +S+ V+IS++SQA E FF F ++LS +
Sbjct: 306 ---MLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAA 362
Query: 297 HSGPVTKGKH-YFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ + G+ + A+ + V +VD+ + EA+ + +P + T V W
Sbjct: 363 NLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQR-TTVSWT 421
Query: 354 ALL 356
AL+
Sbjct: 422 ALI 424
>sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein At3g05340
OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2
Length = 658
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 168/382 (43%), Gaps = 66/382 (17%)
Query: 17 HAQLIS-TCLISSIFL-QLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKM--AL 72
H +I+ T +IS + +L +D R+F + R L N++ C G+ ++
Sbjct: 218 HRNVITLTAVISGLIENELHEDGLRLF-SLMRRGLVHPNSVTYLSALAACSGSQRIVEGQ 276
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
+H L+ K+ S+ I + +DM+ KCG+++ A W +F
Sbjct: 277 QIHALLWKYGIESELCIESALMDMYSKCGSIEDA--------------W--------TIF 314
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
+ E D VS ++ L ++G E + FI + G + + + + L
Sbjct: 315 ESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLG 374
Query: 193 WGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
G LHS V+ + S + FV +GLI+MY KCG +
Sbjct: 375 LGKQLHSLVIKRKFSGNTFVNNGLINMYSKCG----------------------DLTDSQ 412
Query: 253 LAFELMSRRNMISWMVLISAFSQAG-------------VLEKPRFFFFFVSLLSGCSHSG 299
F M +RN +SW +I+AF++ G LE F+SLL CSH G
Sbjct: 413 TVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVG 472
Query: 300 PVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
+ KG+ M + T ++ C++D+LG +GLL EAK ID +P KP C IW AL
Sbjct: 473 LIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQAL 532
Query: 356 LGACCSHYNTKLAELVMRNLLQ 377
LGAC H +T++ E L Q
Sbjct: 533 LGACSFHGDTEVGEYAAEQLFQ 554
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 16/127 (12%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RF 284
+G + I +G L+T Y + G + F+ MS RN+I+ +IS + + E R
Sbjct: 184 SGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRL 243
Query: 285 FFF------------FVSLLSGCSHSGPVTKGKHYFTAMAKF---TYTCYFVCMVDLLGL 329
F ++S L+ CS S + +G+ + K+ + C ++D+
Sbjct: 244 FSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSK 303
Query: 330 SGLLGEA 336
G + +A
Sbjct: 304 CGSIEDA 310
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 158/356 (44%), Gaps = 64/356 (17%)
Query: 50 FTYNTMINGGVRCLC-VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
FTY ++ V C V ++ +H + + + S I + +DM+ + G VDYA
Sbjct: 179 FTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYAS- 237
Query: 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+F MP R++VSW+ MI+ ++G FE L TF E+
Sbjct: 238 ---------------------YVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276
Query: 169 HGFGLS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
S S+ + A AS+ LE G +H ++
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILR----------------------R 314
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF 286
G++S + + ALVTMY G + F+ M R+++SW LIS++ G +K F
Sbjct: 315 GLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIF 374
Query: 287 -------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGL 329
FVS+L CSH G V +GK F M + ++ CMVDLLG
Sbjct: 375 EEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGR 434
Query: 330 SGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
+ L EA K++ +M ++P +WG+LLG+C H N +LAE R L L+ K G+
Sbjct: 435 ANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGN 490
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 127/335 (37%), Gaps = 61/335 (18%)
Query: 63 LCVGN---IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
LC G+ + AL +H + D +A I M+ G+VDYA
Sbjct: 85 LCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARK----------- 133
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
+F K +R + WN + LT G G E L + ++ G Y
Sbjct: 134 -----------VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYT 182
Query: 180 TAFSA----RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIG 235
A +V L G +H+ + S V++ + L+DMY + GC S + G
Sbjct: 183 YVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGG 242
Query: 236 ---------KALVTMYAEGGSTQKADLAFELMSRR------NMISWMVLISAFSQAGVLE 280
A++ YA+ G +A F M R N ++ + ++ A + LE
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302
Query: 281 KPRFFFFFV-------------SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLL 327
+ + ++ +L++ G + G+ F M + ++
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWN-SLISSY 361
Query: 328 GLSGLLGEAKKLIDEM---PSKPTCVIWGALLGAC 359
G+ G +A ++ +EM + PT V + ++LGAC
Sbjct: 362 GVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 161/348 (46%), Gaps = 67/348 (19%)
Query: 50 FTYNTMINGGV--RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
FT +++I R C G+ LHG K F S+ + + +D++ + G +D A+
Sbjct: 162 FTLSSVIKAAAAERRGCCGH-----QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQ 216
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167
++F + R+ VSWN +I+ R + L F +
Sbjct: 217 ----------------------LVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254
Query: 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
GF S YA+ F A +S LE G +H+ ++ L F G+ L+DMY
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY------- 307
Query: 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF- 286
A+ GS A F+ +++R+++SW L++A++Q G ++ ++F
Sbjct: 308 ---------------AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFE 352
Query: 287 ------------FFVSLLSGCSHSGPVTKGKHYFTAMAK---FTYTCYFVCMVDLLGLSG 331
F+S+L+ CSHSG + +G HY+ M K ++V +VDLLG +G
Sbjct: 353 EMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAG 412
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
L A + I+EMP +PT IW ALL AC H NT+L ++ +LD
Sbjct: 413 DLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELD 460
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 135/332 (40%), Gaps = 74/332 (22%)
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
YNT++ +C + +H + + F D + + ++M+ KCG+++ A
Sbjct: 63 YNTLLK---KCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARK--- 116
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG- 170
+F+KMP+RD V+W T+IS ++H + L F ++ G
Sbjct: 117 -------------------VFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGY 157
Query: 171 ----FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
F LSS++ A A R G LH V KC
Sbjct: 158 SPNEFTLSSVIKAAAAERRGCC-----GHQLHGFCV-------------------KC--- 190
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF 285
G +S++ +G AL+ +Y G A L F+ + RN +SW LI+ ++ EK F
Sbjct: 191 GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELF 250
Query: 286 ------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLS 330
F + SL CS +G + +GK M K ++D+ S
Sbjct: 251 QGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS 310
Query: 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
G + +A+K+ D + +K V W +LL A H
Sbjct: 311 GSIHDARKIFDRL-AKRDVVSWNSLLTAYAQH 341
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 125/454 (27%), Positives = 189/454 (41%), Gaps = 109/454 (24%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFL------------QLIDDDYRVFCDIGPRYLFT 51
C +++ L ++IHA LI T LIS ++ Y VF I + F
Sbjct: 35 CSTMREL---KQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFV 91
Query: 52 YNTMINGGVRC-------------LC---------------------VGNIKMALHLHGL 77
+NT+I G R LC +G + LHG+
Sbjct: 92 WNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGM 151
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFGII-RL 128
V K D I + + M+V CG + A FL M+ + W K G+I +
Sbjct: 152 VIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQA 211
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-----GFGLSSMLYATAFS 183
+F +MP+R+ VSWN+MIS R+G + L F E+ GF + S+L A A+
Sbjct: 212 QNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYL 271
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
+ E G +H +V L+ V + LIDMY KCGC IE + +
Sbjct: 272 GAS-----EQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGC--IEEGLNV--------- 315
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
FE ++ + W +I + G E+ F F+
Sbjct: 316 -----------FECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIG 364
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+L+ C+HSG V + +F M K Y ++ MV++LG +GLL EA+ LI MP
Sbjct: 365 VLTACAHSGEVHRADEFFRLM-KEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPV 423
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+ VIW +LL AC N ++A+ + L +LD
Sbjct: 424 EEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLD 457
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 113/353 (32%), Gaps = 128/353 (36%)
Query: 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVR------------------------------- 61
LID +F ++ R ++N+MI+G VR
Sbjct: 207 LIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLN 266
Query: 62 -CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
C +G + +H + + F + + + IDM+ KCG ++
Sbjct: 267 ACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEG-------------- 312
Query: 121 WKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
L +F+ P++ L WN+MI L +GF + F EL G
Sbjct: 313 --------LNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSG---------- 354
Query: 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240
+EP F+G ++T
Sbjct: 355 -----------------------LEPDSVSFIG------------------------VLT 367
Query: 241 MYAEGGSTQKADLAFELMSRRNMIS-----WMVLISAFSQAGVLEKPRFFF--------- 286
A G +AD F LM + MI + ++++ AG+LE+
Sbjct: 368 ACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDT 427
Query: 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAKF--TYTCYFVCMVDLLGLSGLLGEA 336
+ SLLS C G V K + K TC +V + + GL EA
Sbjct: 428 VIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEA 480
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/442 (25%), Positives = 191/442 (43%), Gaps = 111/442 (25%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQLID-----------DDYR-VF--------- 41
AC L++L + +++H+ I + L+ + L+D DD R VF
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVM 337
Query: 42 ------------CDIGPRYLFTYNTMINGG-------------VRCLCVGNIKMALHLHG 76
C++ + ++ MI G C + + ++ + G
Sbjct: 338 SWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLG 397
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K S+ S+A S I M VK ++ A+ AF + +
Sbjct: 398 QAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF----------------------ESLS 435
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFI-ELWNHGFGLSSMLYATAFSARASVYDLEWGP 195
E++LVS+NT + R+ FE + E+ G+S+ +A+ S A+V + G
Sbjct: 436 EKNLVSYNTFLDGTCRN-LNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGE 494
Query: 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255
+HS+VV + G+ + + AL++MY++ GS A F
Sbjct: 495 QIHSQVVKL----------------------GLSCNQPVCNALISMYSKCGSIDTASRVF 532
Query: 256 ELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVSLLSGCSHSGPV 301
M RN+ISW +I+ F++ G VLE KP + V++LS CSH G V
Sbjct: 533 NFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY-VAILSACSHVGLV 591
Query: 302 TKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
++G +F +M + ++ CMVDLL +GLL +A + I+ MP + ++W LG
Sbjct: 592 SEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLG 651
Query: 358 ACCSHYNTKLAELVMRNLLQLD 379
AC H NT+L +L R +L+LD
Sbjct: 652 ACRVHSNTELGKLAARKILELD 673
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 38/222 (17%)
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
L+K +F SD + S IDM VK E++F +F KM
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVK------GENSFENAYK---------------VFDKMS 230
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E ++V+W MI+ + GF E + F+++ GF ++ FSA A + +L G
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQ 290
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI------------ESSIQIGKALVTMYAE 244
LHS + D V L+DMY KC +G + S+ AL+T Y +
Sbjct: 291 LHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMK 348
Query: 245 GG--STQKADLAFELMSRRNM-ISWMVLISAFSQAGVLEKPR 283
+T+ +L E++++ ++ + SAF G L PR
Sbjct: 349 NCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPR 390
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 125/331 (37%), Gaps = 62/331 (18%)
Query: 44 IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103
I P T+++++ C+ + ++ +H + +F D + S I ++ K G
Sbjct: 57 IRPMDSVTFSSLLKS---CIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDS 113
Query: 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
AE F M +FG +RD+VSW+ M++ +G + + F
Sbjct: 114 AKAEDVFETMR-------RFG------------KRDVVSWSAMMACYGNNGRELDAIKVF 154
Query: 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223
+E G + Y A S FVG G + +
Sbjct: 155 VEFLELGLVPNDYCYTAVIRA---------------------CSNSDFVGVGRVTLGFLM 193
Query: 224 GCNGIESSIQIGKALVTMYAEG-GSTQKADLAFELMSRRNMISWMVLISAFSQAGV-LEK 281
ES + +G +L+ M+ +G S + A F+ MS N+++W ++I+ Q G E
Sbjct: 194 KTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREA 253
Query: 282 PRFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVD 325
RFF F S+ S C+ ++ GK + + C V M
Sbjct: 254 IRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYA 313
Query: 326 LLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G + + +K+ D M + + W AL+
Sbjct: 314 KCSADGSVDDCRKVFDRMEDH-SVMSWTALI 343
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 156/371 (42%), Gaps = 80/371 (21%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126
+++ +H K S + + I M+ CG V++A F M P+L W I
Sbjct: 121 SLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVIT 180
Query: 127 ----------------RLLI------------------------MFQKMPERDLVSWNTM 146
++L+ +F +MP RD VSW+TM
Sbjct: 181 ACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTM 240
Query: 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206
I + +G E+ F EL G + + SA + E+G LH V
Sbjct: 241 IVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGY 300
Query: 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE-LMSRRNMIS 265
S V V + LIDMY +CG + A L FE + +R ++S
Sbjct: 301 SWIVSVNNALIDMYSRCG----------------------NVPMARLVFEGMQEKRCIVS 338
Query: 266 WMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPVTKGKHYFTAMA 312
W +I+ + G E+ R F F+SLL CSH+G + +G+ YF+ M
Sbjct: 339 WTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMK 398
Query: 313 KFTYTC----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
+ + ++ CMVDL G SG L +A I +MP PT ++W LLGAC SH N +LA
Sbjct: 399 RVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELA 458
Query: 369 ELVMRNLLQLD 379
E V + L +LD
Sbjct: 459 EQVKQRLNELD 469
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 89/224 (39%), Gaps = 51/224 (22%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C G+ + LHG V+K + S+ + IDM+ +CG V A
Sbjct: 279 CSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMAR-------------- 324
Query: 122 KFGIIRLLIMFQKMPE-RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180
++F+ M E R +VSW +MI+ L HG G E + F E+ +G + + +
Sbjct: 325 --------LVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFIS 376
Query: 181 AFSARASVYDLEWGPHLHS---RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
A + +E G S RV H+EP ++ + GC
Sbjct: 377 LLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHY------------GC------------ 412
Query: 238 LVTMYAEGGSTQKA-DLAFELMSRRNMISWMVLISAFSQAGVLE 280
+V +Y G QKA D ++ I W L+ A S G +E
Sbjct: 413 MVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIE 456
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 50/231 (21%)
Query: 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSAR 185
RLL+ F PE D +NT++ + ++ F+E+ GF S +A A
Sbjct: 60 RLLLCF---PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAV 116
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ L G +H + + +G+ES + +G L+ MY
Sbjct: 117 ENFRSLRTGFQMHCQALK----------------------HGLESHLFVGTTLIGMYGGC 154
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK 305
G + A F+ M + N+++W +I+A C V +
Sbjct: 155 GCVEFARKVFDEMHQPNLVAWNAVITA----------------------CFRGNDVAGAR 192
Query: 306 HYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
F M +T + V + + +G L AK++ EMP + V W ++
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIK-AGELESAKRIFSEMPHRDD-VSWSTMI 241
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 144/335 (42%), Gaps = 65/335 (19%)
Query: 66 GNI---KMALHLHGL-VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
GN+ K+ +HG+ +++ + + + S IDM+VKC +D A
Sbjct: 221 GNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARK------------- 267
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+ +R++V W T+IS + E F ++ + A
Sbjct: 268 ---------LFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAI 318
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ +S+ L G +H ++ +D + IDMY +CG
Sbjct: 319 LVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCG----------------- 361
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------F 288
+ Q A F++M RN+ISW +I+AF G+ E+ F F
Sbjct: 362 -----NIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTF 416
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
VSLLS CSHSG V +G F +M + ++ CMVDLLG +G +GEAK ID MP
Sbjct: 417 VSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMP 476
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
KP WGALL AC H LA + LL ++
Sbjct: 477 VKPMASAWGALLSACRIHKEVDLAGEIAEKLLSME 511
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 115/299 (38%), Gaps = 77/299 (25%)
Query: 85 SDESIAKSSI-DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143
DE + SS+ + +++ +D+A S+F R+ P CWK R+ SW
Sbjct: 36 EDEVVLGSSLTNAYIQSNRLDFATSSFNRI--P---CWK---------------RNRHSW 75
Query: 144 NTMISILTRHGFGFETLCTFIE---LWN----HGFGLSSMLYATAFSARASVYDLEWGPH 196
NT++S G+ C + + L+N H G+ S A A + LE G
Sbjct: 76 NTILS-----GYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGIL 130
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+H + NG++ + +LV MYA+ G+ + A F+
Sbjct: 131 IHGLAMK----------------------NGLDKDDYVAPSLVEMYAQLGTMESAQKVFD 168
Query: 257 LMSRRNMISWMVLISAFSQAGVLEKPRFFFFF---------------VSLLSGCSH--SG 299
+ RN + W VL+ + + + P F F + L+ C + +G
Sbjct: 169 EIPVRNSVLWGVLMKGYLKYS--KDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAG 226
Query: 300 PVTKGKHYFTAMAKFTYTCYFV--CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
V K H + F ++ ++D+ LL A+KL E V+W L+
Sbjct: 227 KVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLF-ETSVDRNVVMWTTLI 284
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 22/125 (17%)
Query: 60 VRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF 119
V C +G+++ +HG + + D S IDM+ +CG + A +
Sbjct: 320 VSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMART----------- 368
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179
+F MPER+++SW++MI+ +G E L F ++ + +S+ +
Sbjct: 369 -----------VFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFV 417
Query: 180 TAFSA 184
+ SA
Sbjct: 418 SLLSA 422
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 153/340 (45%), Gaps = 64/340 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124
+ ++ +H V K F S+ + S +D++ +CG + A+
Sbjct: 226 IDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKH---------------- 269
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
F +M ++DL++WNT+IS L R E L F + GF + + + +A
Sbjct: 270 ------YFHEMEDKDLITWNTLISELERSDSS-EALLMFQRFESQGFVPNCYTFTSLVAA 322
Query: 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244
A++ L G LH R+ G ++++ AL+ MYA+
Sbjct: 323 CANIAALNCGQQLHGRIFR----------------------RGFNKNVELANALIDMYAK 360
Query: 245 GGSTQKADLAF-ELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
G+ + F E++ RRN++SW ++ + G + F F++
Sbjct: 361 CGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMA 420
Query: 291 LLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LS C H+G V KG YF M + C+VDLLG +G +GEA +L++ MP K
Sbjct: 421 VLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFK 480
Query: 347 PTCVIWGALLGACCSH-YNTKLAELVMRNLLQLDVKVFGS 385
P WGA+LGAC +H +N ++ L R +++L K+ G+
Sbjct: 481 PDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGT 520
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 40/243 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MP+RD+V+W MI+ + F E+ G + ++ + ++
Sbjct: 67 LFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKV 126
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L +G +H VV + G+E S+ + A++ MYA T +
Sbjct: 127 LAYGALVHGVVVKL----------------------GMEGSLYVDNAMMNMYATCSVTME 164
Query: 251 AD-LAFELMSRRNMISWMVLISAFSQAG------------VLEKPRFFFFFVSLLSGCSH 297
A L F + +N ++W LI+ F+ G +LE + +++ S
Sbjct: 165 AACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASA 224
Query: 298 S-GPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLLGEAKKLIDEMPSKPTCVIWG 353
S VT GK ++ K + M +L L G L EAK EM K + W
Sbjct: 225 SIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDK-DLITWN 283
Query: 354 ALL 356
L+
Sbjct: 284 TLI 286
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/257 (18%), Positives = 104/257 (40%), Gaps = 38/257 (14%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F+ + ++ V+W T+I+ T G G L + ++ ++ A A AS+
Sbjct: 168 LIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASID 227
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ G +H+ V+ ++ V + ++D+Y +C G
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRC----------------------GYLS 265
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF------------FFFVSLLSGCSH 297
+A F M +++I+W LIS ++ E F + F SL++ C++
Sbjct: 266 EAKHYFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACAN 325
Query: 298 SGPVTKGKHYFTAMAK--FTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ G+ + + F ++D+ G + +++++ E+ + V W +
Sbjct: 326 IAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTS 385
Query: 355 LLGACCSH-YNTKLAEL 370
++ SH Y + EL
Sbjct: 386 MMIGYGSHGYGAEAVEL 402
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 63/226 (27%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSI-FLQLIDDDY----------RVFCDIGPRYL 49
++A S+ S+ ++IHA +I S++ + I D Y F ++ + L
Sbjct: 220 VRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDL 279
Query: 50 FTYNTMINGGVR-------------------------------CLCVGNIKMALHLHGLV 78
T+NT+I+ R C + + LHG +
Sbjct: 280 ITWNTLISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRI 339
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ F + +A + IDM+ KCG + ++ F +++ R
Sbjct: 340 FRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVD---------------------RR 378
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184
+LVSW +M+ HG+G E + F ++ + G +++ SA
Sbjct: 379 NLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSA 424
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 170/373 (45%), Gaps = 61/373 (16%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
+D+ +F ++ R + T+ TMI G + V + +K + V E S
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNRVD----------VARKLFEVMPEKTEVSW 237
Query: 94 IDM---HVKCGAVDYAESAFLRM-LNPSLFCWK----FG----IIRLLIMFQKMPERDLV 141
M + G ++ AE F M + P + C FG I + +F M +RD
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNA 297
Query: 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201
+W MI R GF E L F ++ G S + S A++ L++G +H+ +
Sbjct: 298 TWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357
Query: 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261
V + DV+V S L+ MY+KCG LV KA L F+ S +
Sbjct: 358 VRCQFDDDVYVASVLMTMYVKCG------------ELV----------KAKLVFDRFSSK 395
Query: 262 NMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYF 308
++I W +IS ++ G+ E+ F +++L+ CS++G + +G F
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIF 455
Query: 309 TAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
+M +KF T ++ C VD+LG +G + +A +LI+ M KP +WGALLGAC +H
Sbjct: 456 ESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSR 515
Query: 365 TKLAELVMRNLLQ 377
LAE+ + L +
Sbjct: 516 LDLAEVAAKKLFE 528
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 57/251 (22%)
Query: 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL-------WNHGFGLSSML 177
I+ +F+ MPER++VSW M+ + G E F + W FG ++
Sbjct: 95 IVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFG--GLI 152
Query: 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKA 237
+YD M P DV + +I +
Sbjct: 153 DDGRIDKARKLYD-------------MMPVKDVVASTNMIGGLCR--------------- 184
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FF 288
G +A L F+ M RN+++W +I+ + Q ++ R F +
Sbjct: 185 -------EGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSW 237
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMA-KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
S+L G + SG + + +F M K C M+ G G + +A+++ D M +
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACN--AMIVGFGEVGEISKARRVFDLMEDRD 295
Query: 348 TCVIWGALLGA 358
W ++ A
Sbjct: 296 NAT-WRGMIKA 305
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 17/156 (10%)
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------F 287
++V+ Y G ++A F+ MS RN++SW L+S + + ++ + R F
Sbjct: 53 SIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVS 112
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMA---KFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+ +++ G G V + + F M + ++T F ++D G + +A+KL D MP
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLID----DGRIDKARKLYDMMP 168
Query: 345 SKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
K V ++G C A L+ + + +V
Sbjct: 169 VK-DVVASTNMIGGLCREGRVDEARLIFDEMRERNV 203
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/439 (23%), Positives = 183/439 (41%), Gaps = 104/439 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLIST-----CLISSIFLQL------IDDDYRVFCDIGPRYL 49
+K C L L + +IH+Q+I T + S+ + + +D + + + +
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 556
Query: 50 FTYNTMING--------------------GVR------------CLCVGNIKMALHLHGL 77
++ TMI G G+R C + +K +H
Sbjct: 557 VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 616
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
F SD + + ++ +CG + E ++L F++
Sbjct: 617 ACVSGFSSDLPFQNALVTLYSRCGKI---EESYL-------------------AFEQTEA 654
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
D ++WN ++S + G E L F+ + G ++ + +A A + +++ G +
Sbjct: 655 GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV 714
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ + G +S ++ AL++MYA+ GS A+ F
Sbjct: 715 HAVITK----------------------TGYDSETEVCNALISMYAKCGSISDAEKQFLE 752
Query: 258 MSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304
+S +N +SW +I+A+S+ G + F V +LS CSH G V KG
Sbjct: 753 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 812
Query: 305 KHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACC 360
YF +M +++ + ++VC+VD+L +GLL AK+ I EMP KP ++W LL AC
Sbjct: 813 IAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACV 872
Query: 361 SHYNTKLAELVMRNLLQLD 379
H N ++ E +LL+L+
Sbjct: 873 VHKNMEIGEFAAHHLLELE 891
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 154/364 (42%), Gaps = 70/364 (19%)
Query: 20 LISTCLISSIFLQLIDDDYRVFC-----DIGPRYLFTYNTMINGGVRCLCVGNIKMALHL 74
L + L++ L + + +R+F +I P +TY +++ C+ +G++++ +
Sbjct: 457 LWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ-YTYPSILK---TCIRLGDLELGEQI 512
Query: 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
H + K F + + IDM+ K G +D A W +LI F
Sbjct: 513 HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA--------------WD-----ILIRFAG 553
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
+D+VSW TMI+ T++ F + L TF ++ + G + A SA A + L+ G
Sbjct: 554 ---KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG 610
Query: 195 PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLA 254
+H++ +G S + ALVT+Y+ G +++ LA
Sbjct: 611 QQIHAQAC----------------------VSGFSSDLPFQNALVTLYSRCGKIEESYLA 648
Query: 255 FELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSHSGPV 301
FE + I+W L+S F Q+G E+ R F F F S + S + +
Sbjct: 649 FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 708
Query: 302 TKGKHYFTAMAKFTYTCYF-VC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
+GK + K Y VC ++ + G + +A+K E+ +K V W A++ A
Sbjct: 709 KQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE-VSWNAIINA 767
Query: 359 CCSH 362
H
Sbjct: 768 YSKH 771
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 154/391 (39%), Gaps = 67/391 (17%)
Query: 9 SLPIARKIHAQLI------STCLISSIF-LQLIDDD----YRVFCDIGPRYLFTYNTMIN 57
SL RK+H+Q++ + CL +F L D ++VF ++ R +FT+N MI
Sbjct: 100 SLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIK 159
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV--DYAESAFLRML- 114
+G + L + + + V+ S + + G+V D E R+L
Sbjct: 160 ELASRNLIGEV-FGLFVRMVSEN---VTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 215
Query: 115 ----------NPSLFCW-KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCT 162
NP + + + G + L +F + +D SW MIS L+++ E +
Sbjct: 216 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRL 275
Query: 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
F +++ G + +++ SA + LE G LH V+ + S D +V
Sbjct: 276 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV---------- 325
Query: 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282
CN ALV++Y G+ A+ F MS+R+ +++ LI+ SQ G EK
Sbjct: 326 --CN----------ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 373
Query: 283 RFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL 329
F SL+ CS G + +G+ K + LL L
Sbjct: 374 MELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 433
Query: 330 SGLLGEAKKLIDEM--PSKPTCVIWGALLGA 358
+ + +D V+W +L A
Sbjct: 434 YAKCADIETALDYFLETEVENVVLWNVMLVA 464
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 122/328 (37%), Gaps = 95/328 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL------------QLIDDDYRVFCDIGPRY 48
+ AC ++SL I ++H ++ S ++ LI ++ +F ++ R
Sbjct: 295 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH-IFSNMSQRD 353
Query: 49 LFTYNTMING--------------------------------GVRCLCVGNIKMALHLHG 76
TYNT+ING V C G + LH
Sbjct: 354 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
K F S+ I + ++++ KC ++ A FL ++ W +M
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN-------VM----- 461
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
LV++ + + R+ F E+ + + S+L + DLE G
Sbjct: 462 ---LVAYGLLDDL--RNSFRIFRQMQIEEIVPNQYTYPSILKTC-----IRLGDLELGEQ 511
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256
+HS+++ L+ +V S LIDMY K G K D A++
Sbjct: 512 IHSQIIKTNFQLNAYVCSVLIDMYAKLG-------------------------KLDTAWD 546
Query: 257 LMSR---RNMISWMVLISAFSQAGVLEK 281
++ R ++++SW +I+ ++Q +K
Sbjct: 547 ILIRFAGKDVVSWTTMIAGYTQYNFDDK 574
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/364 (20%), Positives = 140/364 (38%), Gaps = 70/364 (19%)
Query: 39 RVFCD-----IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS 93
R+FCD I P + ++++++ C + ++++ LHGLV K F SD + +
Sbjct: 274 RLFCDMYVLGIMPT-PYAFSSVLSA---CKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 329
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRH 153
+ ++ G + AE +F M +RD V++NT+I+ L++
Sbjct: 330 VSLYFHLGNLISAEH----------------------IFSNMSQRDAVTYNTLINGLSQC 367
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G+G + + F + G S A+ A ++ L G LH+ +
Sbjct: 368 GYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKL--------- 418
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA- 272
G S+ +I AL+ +YA+ + A F N++ W V++ A
Sbjct: 419 -------------GFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 465
Query: 273 ------------FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY- 319
F Q + E + + S+L C G + G+ + + K +
Sbjct: 466 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525
Query: 320 FVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
+VC ++D+ G L A ++ K V W ++ + A R +L
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDV-VSWTTMIAGYTQYNFDDKALTTFRQMLD 584
Query: 378 LDVK 381
++
Sbjct: 585 RGIR 588
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/263 (19%), Positives = 94/263 (35%), Gaps = 45/263 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA-RASVY 189
+F +MPER + +WN MI L E F+ + + + ++ A R
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
+ +H+R+++ G+ S + L+ +Y+ G
Sbjct: 202 AFDVVEQIHARILYQ----------------------GLRDSTVVCNPLIDLYSRNGFVD 239
Query: 250 KADLAFELMSRRNMISWMVLISAFSQA----------------GVLEKPRFFFFFVSLLS 293
A F+ + ++ SW+ +IS S+ G++ P + F S+LS
Sbjct: 240 LARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTP---YAFSSVLS 296
Query: 294 GCSHSGPVTKGKHYFTAMAKFTYTC-YFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
C + G+ + K ++ +VC +V L G L A+ + M +
Sbjct: 297 ACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT 356
Query: 351 IWGALLGACCSHYNTKLAELVMR 373
+ G Y K EL R
Sbjct: 357 YNTLINGLSQCGYGEKAMELFKR 379
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 156/360 (43%), Gaps = 67/360 (18%)
Query: 38 YRVFCDIGPRY-LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
Y+ D+G R FTY ++ + +G+ LH V K+ F +A + M
Sbjct: 97 YKKMRDLGVRPDEFTYPFVVKAISQ---LGDFSCGFALHAHVVKYGFGCLGIVATELVMM 153
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFG 156
++K G + AE +F+ M +DLV+WN +++ + G
Sbjct: 154 YMKFGELSSAE----------------------FLFESMQVKDLVAWNAFLAVCVQTGNS 191
Query: 157 FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216
L F ++ S + SA + LE G ++ R E ++ V +
Sbjct: 192 AIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENAR 251
Query: 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQA 276
+DM+LKCG +T+ A + FE M +RN++SW +I ++
Sbjct: 252 LDMHLKCG----------------------NTEAARVLFEEMKQRNVVSWSTMIVGYAMN 289
Query: 277 GVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFT------YT 317
G + F F+ +LS CSH+G V +GK YF+ M +
Sbjct: 290 GDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRK 349
Query: 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377
++ CMVDLLG SGLL EA + I +MP +P IWGALLGAC H + L + V L++
Sbjct: 350 EHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVE 409
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 107/307 (34%), Gaps = 67/307 (21%)
Query: 69 KMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128
K +H +V + F S+ ++ V G + YA F M P +F
Sbjct: 25 KQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFL-------- 76
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
WNT+ R+ FE+L + ++ + G Y A + +
Sbjct: 77 --------------WNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQL 122
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248
D G LH+ VV GC GI + LV MY + G
Sbjct: 123 GDFSCGFALHAHVVK-----------------YGFGCLGI-----VATELVMMYMKFGEL 160
Query: 249 QKADLAFELMSRRNMISWMVLISAFSQAG----VLEKPRFF------------FFFVSLL 292
A+ FE M +++++W ++ Q G LE +F F VS+L
Sbjct: 161 SSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALE---YFNKMCADAVQFDSFTVVSML 217
Query: 293 SGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
S C G + G+ + K C + +D+ G A+ L +EM +
Sbjct: 218 SACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQR-NV 276
Query: 350 VIWGALL 356
V W ++
Sbjct: 277 VSWSTMI 283
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 183/417 (43%), Gaps = 68/417 (16%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGP--RYLFTYNTMINGGV- 60
CGSL + A ++ + + + ++ +F +I + + +GP L +++M + G+
Sbjct: 46 CGSLSNSDYANRVFSHIQNPNVL--VFNAMI----KCYSLVGPPLESLSFFSSMKSRGIW 99
Query: 61 -----------RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
C + +++ +HG + + F I ++++ G + A+
Sbjct: 100 ADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKV 159
Query: 110 FLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160
F M ++ W + R L +F++M ER +VSWN+MIS L++ G E L
Sbjct: 160 FDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREAL 219
Query: 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220
F E+ + GF T AS+ L+ G +HS SGL +
Sbjct: 220 ELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAE----------SSGLFKDF 269
Query: 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE 280
I +G ALV Y + G + A F M RRN++SW LIS + G E
Sbjct: 270 -----------ITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGE 318
Query: 281 KPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFT-AMAKF---TYTCYFVC 322
F F+ +L+ CS++G V +G+ F M +F T ++
Sbjct: 319 FGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGA 378
Query: 323 MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
MVDL+ SG + EA K + MP +WG+LL AC SH + KLAE+ L++++
Sbjct: 379 MVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVAAMELVKIE 435
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 64/225 (28%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCL--ISSIFLQLID---------DDYRVFCDIGPRYL 49
+K+C SL L + +H +LI T + I + +++ D +VF ++ R +
Sbjct: 109 LKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNV 168
Query: 50 FTYNTMINGGVRCLC-VGNIKMALHLHGLVKKFYFVS----------------------- 85
+N MI G C G+++ LHL + + VS
Sbjct: 169 VVWNLMIRG----FCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCE 224
Query: 86 --------DESIAKSSIDMHVKCGAVD-------YAESA-----FLRMLNP--SLFCWKF 123
DE+ + + + G +D AES+ F+ + N +C
Sbjct: 225 MIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSG 284
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHG---FGFETLCTFIE 165
+ +F+KM R++VSWNT+IS +G FG + IE
Sbjct: 285 DLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIE 329
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 62/339 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G++ + LH L K +S +A + I+M+ KC +D A
Sbjct: 408 CATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKA--------------- 452
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +F +P ++++SW ++I+ L + FE L F+ +++ A
Sbjct: 453 -------LDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAA 504
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+A A + L G +H+ V+ LD F+ + L+DMY++CG + T
Sbjct: 505 LAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCG------------RMNTA 552
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG----VLE------KPRFF---FFF 288
+++ S +K ++ SW +L++ +S+ G V+E K R F
Sbjct: 553 WSQFNSQKK-----------DVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITF 601
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+SLL GCS S V +G YF+ M + T ++ C+VDLLG +G L EA K I +MP
Sbjct: 602 ISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPV 661
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384
P +WGALL AC H+ L EL +++ +LD K G
Sbjct: 662 TPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVG 700
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 43/254 (16%)
Query: 122 KFG-IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLYA 179
+FG ++ +F KM ER+L SWN ++ + G+ E +C + LW G +
Sbjct: 141 RFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFP 200
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
+ DL G +H VV G E I + AL+
Sbjct: 201 CVLRTCGGIPDLARGKEVHVHVVRY----------------------GYELDIDVVNALI 238
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
TMY + G + A L F+ M RR++ISW +IS + + G+ + FF
Sbjct: 239 TMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLM 298
Query: 288 -FVSLLSGCSHSGPVTKGK--HYFTAMAKFTYTCYFVC--MVDLLGLSGLLGEAKKLIDE 342
S++S C G G+ H + F VC + + +G EA+KL
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAYVITTGFAVDIS-VCNSLTQMYLNAGSWREAEKLFSR 357
Query: 343 MPSKPTCVIWGALL 356
M K V W ++
Sbjct: 358 MERKDI-VSWTTMI 370
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 77/272 (28%)
Query: 36 DDYRVFCDIGPRYLFTYNTMINGGV-------------RCLCVGNIKMALH--------- 73
D + VF + R LF++N ++ G R L VG +K ++
Sbjct: 147 DAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTC 206
Query: 74 -----------LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK 122
+H V ++ + D + + I M+VKCG V A
Sbjct: 207 GGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR--------------- 251
Query: 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
++F +MP RD++SWN MIS +G E L F + M +
Sbjct: 252 -------LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVI 304
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
SA + D G +H+ V+ ++D+ V CN +L MY
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISV------------CN----------SLTQMY 342
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
GS ++A+ F M R++++SW +IS +
Sbjct: 343 LNAGSWREAEKLFSRMERKDIVSWTTMISGYE 374
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 44/212 (20%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G+ ++ +H V F D S+ S M++ G+ AE
Sbjct: 307 CELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEK------------- 353
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F +M +D+VSW TMIS + + + T+ + + A
Sbjct: 354 ---------LFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAV 404
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
SA A++ DL+ G LH + V V + LI+MY KC C I KAL
Sbjct: 405 LSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKC--------IDKAL--- 453
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
D+ F + R+N+ISW +I+
Sbjct: 454 ----------DI-FHNIPRKNVISWTSIIAGL 474
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE----------- 280
+++G A + M+ G+ A F MS RN+ SW VL+ +++ G +
Sbjct: 129 VELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLW 188
Query: 281 ----KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGL---SGLL 333
KP + F +L C + +GK + ++ Y + L+ + G +
Sbjct: 189 VGGVKPD-VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDV 247
Query: 334 GEAKKLIDEMPSKPTCVIWGALL 356
A+ L D MP + + W A++
Sbjct: 248 KSARLLFDRMPRRDI-ISWNAMI 269
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 168/418 (40%), Gaps = 117/418 (27%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGV 60
+KACG++K L + R+ HAQ R FC +++ NTMI
Sbjct: 156 LKACGTMKDLNLGRQFHAQTFR---------------LRGFC-----FVYVGNTMI---- 191
Query: 61 RCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFC 120
DM+VKC ++D A F M +
Sbjct: 192 ----------------------------------DMYVKCESIDCARKVFDEMPERDVIS 217
Query: 121 W--------KFGIIRLLI-MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
W + G + +F+ +P +D+V+W M++ ++ E L F + G
Sbjct: 218 WTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 277
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHM------EPSLDVFVGSGLIDMYLKCGC 225
+ A SA A + ++ R V + PS V +GS LIDMY KCG
Sbjct: 278 RADEVTVAGYISACAQLGASKYA----DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCG- 332
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
+E ++ + F M+ +N+ ++ +I + G ++
Sbjct: 333 -NVEEAVNV--------------------FMSMNNKNVFTYSSMILGLATHGRAQEALHL 371
Query: 286 FF--------------FVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLL 327
F FV L CSHSG V +G+ F +M + ++ CMVDLL
Sbjct: 372 FHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLL 431
Query: 328 GLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
G +G L EA +LI M +P +WGALLGAC H N ++AE+ +L +L+ + G+
Sbjct: 432 GRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGN 489
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC--------- 225
S ++ A ++ DL G H++ + V+VG+ +IDMY+KC
Sbjct: 149 SFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFD 208
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
E + L+ YA G+ + A FE + ++M++W +++ F+Q ++ +
Sbjct: 209 EMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 268
Query: 286 F 286
F
Sbjct: 269 F 269
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 62/332 (18%)
Query: 65 VGNIKMALHLHGLVKKFYFVS-DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
V +++ +HGL + V D I S +DM+ KC D A+
Sbjct: 217 VEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQK--------------- 261
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
+F +MP R++V+W +I+ + + + F E+ + ++ S
Sbjct: 262 -------VFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A V L G +H ++ ++ G+ LID+Y+KCGC
Sbjct: 315 ACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGC------------------ 356
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVS 290
++A L FE + +N+ +W +I+ F+ G F+ F++
Sbjct: 357 ----LEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMA 412
Query: 291 LLSGCSHSGPVTKGKHYFTAM-AKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSK 346
+LS C+H G V +G+ F +M +F ++ CMVDL G GLL EAK LI+ MP +
Sbjct: 413 VLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPME 472
Query: 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
PT V+WGAL G+C H + +L + +++L
Sbjct: 473 PTNVVWGALFGSCLLHKDYELGKYAASRVIKL 504
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 114/307 (37%), Gaps = 62/307 (20%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132
H + KF SD + S I + G D+A +F
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASR----------------------LF 161
Query: 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192
++D+V+W MI R+G E + F+E+ G + M + A V D+
Sbjct: 162 DGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVR 221
Query: 193 WGPHLHSRVVHM-EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
+G +H + DVF+GS L+DMY KC C A
Sbjct: 222 FGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSC----------------------YDDA 259
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHS 298
F+ M RN+++W LI+ + Q+ +K F S+LS C+H
Sbjct: 260 QKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHV 319
Query: 299 GPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
G + +G+ M K + T ++DL G L EA + + + K W A+
Sbjct: 320 GALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK-NVYTWTAM 378
Query: 356 LGACCSH 362
+ +H
Sbjct: 379 INGFAAH 385
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/271 (18%), Positives = 102/271 (37%), Gaps = 71/271 (26%)
Query: 1 MKACGSLKSLPIARKIHAQLIST------CLISSIFLQLI------DDDYRVFCDIGPRY 48
+KA G ++ + R +H + T I S + + DD +VF ++ R
Sbjct: 211 LKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRN 270
Query: 49 LFTYNTMINGGVRCLC--------------------------------VGNIKMALHLHG 76
+ T+ +I G V+ C VG + +H
Sbjct: 271 VVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHC 330
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
+ K + + + ID++VKCG ++ A +++F+++
Sbjct: 331 YMIKNSIEINTTAGTTLIDLYVKCGCLEEA----------------------ILVFERLH 368
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
E+++ +W MI+ HG+ + F + + + + + SA A +E G
Sbjct: 369 EKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRR 428
Query: 197 LHSRV---VHMEPSLDVFVGSGLIDMYLKCG 224
L + +MEP D + + ++D++ + G
Sbjct: 429 LFLSMKGRFNMEPKADHY--ACMVDLFGRKG 457
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 168/380 (44%), Gaps = 69/380 (18%)
Query: 49 LFTYNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96
L +N M++ GVR C + NI HG V + F S ++I + IDM
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381
Query: 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLI----------MFQKMPERDLVSWNTM 146
++KC D A F RM N ++ W I+ + F+ MPE+++VSWNT+
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWN-SIVAGYVENGEVDAAWETFETMPEKNIVSWNTI 440
Query: 147 ISILTRHGFGFETLCTFIELWN----HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
IS L + E + F + + + G++ M A+A ++ +W
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKW--------- 491
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
+Y NGI+ +++G LV M++ G + A F ++ R+
Sbjct: 492 ----------------IYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRD 535
Query: 263 MISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFT 309
+ +W I A + AG E+ F FV L+ CSH G V +GK F
Sbjct: 536 VSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFY 595
Query: 310 AMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNT 365
+M K ++ CMVDLLG +GLL EA +LI++MP +P VIW +LL AC N
Sbjct: 596 SMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNV 655
Query: 366 KLAELVMRNLLQLDVKVFGS 385
++A + L + GS
Sbjct: 656 EMAAYAAEKIQVLAPERTGS 675
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/352 (18%), Positives = 125/352 (35%), Gaps = 75/352 (21%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+ AC ++ +IH ++ +F+Q +D +VF ++ R +
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNV 200
Query: 50 FTYNTMINGGVR---------------------------------CLCVGNIKMALHLHG 76
++ +MI G R C + +++ ++
Sbjct: 201 VSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYA 260
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136
++ ++ + + +DM++KC A+D A+ +F +
Sbjct: 261 FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKR----------------------LFDEYG 298
Query: 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPH 196
+L N M S R G E L F + + G + +A S+ + + ++ WG
Sbjct: 299 ASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKS 358
Query: 197 LHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI---------ESSIQIGKALVTMYAEGGS 247
H V+ + + LIDMY+KC ++ ++V Y E G
Sbjct: 359 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGE 418
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299
A FE M +N++SW +IS Q + E+ F + G + G
Sbjct: 419 VDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 22/145 (15%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
+N++I G E + F+ + N G + SA A G +H +V
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262
M + D+FV + L+ Y +CG E S +K F+ MS RN
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECG-------------------ELDSARK---VFDEMSERN 199
Query: 263 MISWMVLISAFSQAGVLEKPRFFFF 287
++SW +I +++ + FF
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFF 224
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 169/377 (44%), Gaps = 55/377 (14%)
Query: 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLC--VGNIKMALHLHGLVKKFYFVSDESIA 90
L+D+ +++F ++ + + MI + C GN++ ++ + + D +
Sbjct: 192 LVDEAFKLFEEMKDSNVMP-DEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLL 250
Query: 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLF-----------CWKFGIIRLLIMFQKMPERD 139
+ + M+ G +D A F +M +LF C + + ++F + ++D
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQ--VIFDQTEKKD 308
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
LV W TMIS + E L F E+ G + + SA A++ L+ +HS
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHS 368
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
+H+ NG+ES + I AL+ MYA+ G FE M
Sbjct: 369 -CIHV---------------------NGLESELSINNALINMYAKCGGLDATRDVFEKMP 406
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
RRN++SW +I+A S G F FV +L GCSHSG V +GK
Sbjct: 407 RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKK 466
Query: 307 YFTAMA-KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362
F +M ++ T ++ CMVDL G + LL EA ++I+ MP VIWG+L+ AC H
Sbjct: 467 IFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIH 526
Query: 363 YNTKLAELVMRNLLQLD 379
+L + + +L+L+
Sbjct: 527 GELELGKFAAKRILELE 543
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 134/325 (41%), Gaps = 66/325 (20%)
Query: 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131
+ LHG+ K + D + +DM+ CG ++YA + +
Sbjct: 131 MELHGVAFKIATLCDPFVETGFMDMYASCGRINYARN----------------------V 168
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F +M RD+V+WNTMI R G E F E+ + M+ SA ++
Sbjct: 169 FDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNM 228
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE---------SSIQIGKALVTMY 242
+ ++ ++ + +D + + L+ MY GC + ++ + A+V+ Y
Sbjct: 229 RYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGY 288
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLE-------KPRFFFFF 288
++ G A + F+ +++++ W +ISA+ ++ V E KP F
Sbjct: 289 SKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMF 348
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV-----------CMVDLLGLSGLLGEAK 337
S++S C++ G + K AK+ ++C V ++++ G L +
Sbjct: 349 -SVISACANLGILDK--------AKWVHSCIHVNGLESELSINNALINMYAKCGGLDATR 399
Query: 338 KLIDEMPSKPTCVIWGALLGACCSH 362
+ ++MP + V W +++ A H
Sbjct: 400 DVFEKMPRR-NVVSWSSMINALSMH 423
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 23/154 (14%)
Query: 129 LIMFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
L +F +P + + +N + L+R T+ + + + G L + A +
Sbjct: 64 LNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSK 123
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
V L G LH + D FV +G +DMY C G
Sbjct: 124 VSALFEGMELHGVAFKIATLCDPFVETGFMDMYASC----------------------GR 161
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
A F+ MS R++++W +I + + G++++
Sbjct: 162 INYARNVFDEMSHRDVVTWNTMIERYCRFGLVDE 195
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 149/330 (45%), Gaps = 62/330 (18%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
+K+ LHG + K F + +I + IDM+ KCG ++ A
Sbjct: 457 LKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYE------------------- 497
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F+++ +RD+VSWN+MI+ + + F ++ G + + A SA A+
Sbjct: 498 ---IFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACAN 554
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ +G +H ++ + DV+ S LIDMY KCG +++++ +
Sbjct: 555 LPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCG--NLKAAMNV------------- 599
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF--------------FVSLLS 293
F+ M +N++SW +I+A G L+ F F+ ++S
Sbjct: 600 -------FKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIIS 652
Query: 294 GCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
C H G V +G +F +M + ++ C+VDL G +G L EA + + MP P
Sbjct: 653 SCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDA 712
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WG LLGAC H N +LAE+ L+ LD
Sbjct: 713 GVWGTLLGACRLHKNVELAEVASSKLMDLD 742
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 126/322 (39%), Gaps = 57/322 (17%)
Query: 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127
I + + LHGLV + SI S + M+ KCG D A
Sbjct: 255 IDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASK------------------- 295
Query: 128 LLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187
+F+ M D V+WN MIS + G E+L F E+ + G ++ +++ + +
Sbjct: 296 ---LFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSK 352
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----------GCNGIESSIQIGK 236
+LE+ +H ++ SLD+F+ S LID Y KC CN ++ + +
Sbjct: 353 FENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVD--VVVFT 410
Query: 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLS--G 294
A+++ Y G + M W+V + L VS+L G
Sbjct: 411 AMISGYLHNGL---------YIDSLEMFRWLVKVKISPNEITL---------VSILPVIG 452
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ + + H F F C C ++D+ G + A ++ + + SK V W
Sbjct: 453 ILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERL-SKRDIVSWN 511
Query: 354 ALLGACCSHYNTKLAELVMRNL 375
+++ C N A + R +
Sbjct: 512 SMITRCAQSDNPSAAIDIFRQM 533
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 44/226 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C+ + N K L V +E +A S I +++ G +D F R+L
Sbjct: 148 CVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVL------- 200
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
++D V WN M++ + G + F + +++ +
Sbjct: 201 ---------------QKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCV 245
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
S AS ++ G LH VV + + + L+ MY KC
Sbjct: 246 LSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKC------------------ 287
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF 287
G A F +MSR + ++W +IS + Q+G++E+ FF+
Sbjct: 288 ----GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFY 329
Score = 31.6 bits (70), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 108/294 (36%), Gaps = 54/294 (18%)
Query: 131 MFQKMPER--DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188
MF ++ R + WN++IS R+G + L + ++ G + A ++
Sbjct: 92 MFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVAL 151
Query: 189 YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI---------QIGKALV 239
+ + L V + + FV S LI YL+ G + S + I ++
Sbjct: 152 KNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVML 211
Query: 240 TMYAEGGSTQKADLAFELMSRRNMIS--------------------------WMVLISAF 273
YA+ G+ F +M R + IS +V++S
Sbjct: 212 NGYAKCGALDSVIKGFSVM-RMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGV 270
Query: 274 SQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLL 333
G ++ SLLS S G F M++ T + CM+ SGL+
Sbjct: 271 DFEGSIKN--------SLLSMYSKCGRFDDASKLFRMMSR-ADTVTWNCMISGYVQSGLM 321
Query: 334 GEAKKLIDEMPSK---PTCVIWGALLGACCSHYNTKLAE----LVMRNLLQLDV 380
E+ EM S P + + +LL + N + + +MR+ + LD+
Sbjct: 322 EESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDI 375
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 185/447 (41%), Gaps = 108/447 (24%)
Query: 2 KACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYLF 50
KA SL+ ++IHA + I +F+ +L DD ++F +I R L
Sbjct: 116 KAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLE 175
Query: 51 TYNTMINGGVR--------------------------------CLCVGNIKMALHLHGLV 78
T+N I+ V C ++ + + LHGLV
Sbjct: 176 TWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLV 235
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
+ F +D S+ ID + KC + +E I+F +M +
Sbjct: 236 LRSGFDTDVSVCNGLIDFYGKCKQIRSSE----------------------IIFTEMGTK 273
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
+ VSW ++++ ++ + ++ S + ++ SA A + LE G +H
Sbjct: 274 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIH 333
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ V C +E +I +G ALV MY + G + ++ AF+ M
Sbjct: 334 AHAVK--------------------AC--VERTIFVGSALVDMYGKCGCIEDSEQAFDEM 371
Query: 259 SRRNMISWMVLISAFSQAGVLE---------KPR------FFFFFVSLLSGCSHSGPVTK 303
+N+++ LI ++ G ++ PR + FVSLLS CS +G V
Sbjct: 372 PEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVEN 431
Query: 304 GKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
G F +M + TY ++ C+VD+LG +G++ A + I +MP +PT +WGAL A
Sbjct: 432 GMKIFDSM-RSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNA 490
Query: 359 CCSHYNTKLAELVMRNLLQLDVKVFGS 385
C H +L L NL +LD K G+
Sbjct: 491 CRMHGKPQLGLLAAENLFKLDPKDSGN 517
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 46/265 (17%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++ + P R++VSW ++IS L ++G L F E+ G + + AF A AS+
Sbjct: 63 LVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLR 122
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
G +H+ V LDVFVG DMY K
Sbjct: 123 LPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLR----------------------D 160
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPR-----FFFF-----------FVSLLS 293
A F+ + RN+ +W IS G +PR F F F + L+
Sbjct: 161 DARKLFDEIPERNLETWNAFISNSVTDG---RPREAIEAFIEFRRIDGHPNSITFCAFLN 217
Query: 294 GCSHSGPVTKGKHYFTAMAKFTY-TCYFVC--MVDLLGLSGLLGEAKKLIDEMPSKPTCV 350
CS + G + + + T VC ++D G + ++ + EM +K V
Sbjct: 218 ACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTK-NAV 276
Query: 351 IWGALLGA-CCSHYNTKLAELVMRN 374
W +L+ A +H + K + L +R+
Sbjct: 277 SWCSLVAAYVQNHEDEKASVLYLRS 301
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 17/135 (12%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK--------------PR 283
L+ MY++ + A L L RN++SW LIS +Q G P
Sbjct: 48 LINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPN 107
Query: 284 FFFFFVSLLSGCSHSGPVT-KGKHYFTAMAKFTYTCYFVCMV-DLLGLSGLLGEAKKLID 341
F F + + S PVT K H + C D+ + L +A+KL D
Sbjct: 108 DFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFD 167
Query: 342 EMPSKPTCVIWGALL 356
E+P + W A +
Sbjct: 168 EIPER-NLETWNAFI 181
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+ AC + L + R IHA + C+ +IF+ I+D + F ++ + L
Sbjct: 317 LSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNL 376
Query: 50 FTYNTMINGGVRCLCVGNIKMALHL 74
T N++I G G + MAL L
Sbjct: 377 VTRNSLIGGYAH---QGQVDMALAL 398
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 62/335 (18%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + N+++ +HGL K + D ++A + + M+ KC A+
Sbjct: 353 CGLIENLELGRSVHGLSIKV-GIWDTNVANALVHMYAKCYQNRDAK-------------- 397
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F+ E+D+V+WN++IS +++G E L F + + + + A+
Sbjct: 398 --------YVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASL 449
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
FSA AS+ L G LH+ V + F+ S SS+ +G AL+
Sbjct: 450 FSACASLGSLAVGSSLHAYSVKLG-----FLAS---------------SSVHVGTALLDF 489
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL--------------EKPRFFFF 287
YA+ G Q A L F+ + +N I+W +I + + G +KP F
Sbjct: 490 YAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTF 549
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAK---FT-YTCYFVCMVDLLGLSGLLGEAKKLIDEM 343
S+LS C H+G V +GK YF++M K FT T ++ CMVD+L +G L +A +I++M
Sbjct: 550 -TSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKM 608
Query: 344 PSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
P +P +GA L C H L E+V++ +L L
Sbjct: 609 PIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDL 643
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 97/418 (23%), Positives = 155/418 (37%), Gaps = 106/418 (25%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDY----------RVFCDIGPRYLF 50
+KAC L+ L +KIH QL+ ++ L + D Y +VF DI R +
Sbjct: 149 LKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVV 208
Query: 51 TYNTMINGGVRC-LC---------------VGN-----------IKM-ALH----LHGLV 78
+ +MI G V+ LC +GN K+ ALH HG +
Sbjct: 209 CWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCL 268
Query: 79 KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138
K + S +DM+VKCG + A +F +
Sbjct: 269 VKSGIELSSCLVTSLLDMYVKCGDISNARR----------------------VFNEHSHV 306
Query: 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLH 198
DLV W MI T +G E L F ++ + + A+ S + +LE G +H
Sbjct: 307 DLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVH 366
Query: 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELM 258
+ + G+ D + ALV MYA+ + A FE+
Sbjct: 367 GLSIKV----------GIWD-------------TNVANALVHMYAKCYQNRDAKYVFEME 403
Query: 259 SRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGPVTKGK 305
S +++++W +IS FSQ G + + F F SL S C+ G + G
Sbjct: 404 SEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGS 463
Query: 306 --HYFTAMAKFTYTCYF---VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGA 358
H ++ F + ++D G A+ + D + K T + W A++G
Sbjct: 464 SLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNT-ITWSAMIGG 520
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 103/243 (42%), Gaps = 40/243 (16%)
Query: 130 IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189
++F ++PE D W M+ + E + + L HGF ++++ A A +
Sbjct: 97 LVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQ 156
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
DL+ G +H ++V + PS D V +GL+DMY KC G +
Sbjct: 157 DLDNGKKIHCQLVKV-PSFDNVVLTGLLDMYAKC----------------------GEIK 193
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
A F ++ RN++ W +I+ + + + E+ F + +L+ C+
Sbjct: 194 SAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACT 253
Query: 297 HSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
+ +GK + + K +C ++D+ G + A+++ +E S V+W
Sbjct: 254 KLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEH-SHVDLVMWT 312
Query: 354 ALL 356
A++
Sbjct: 313 AMI 315
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 141/332 (42%), Gaps = 60/332 (18%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C+ ++K +H V K + + S M+ KCG V A+
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK---------------- 277
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183
I+F KM +L+ WN MIS ++G+ E + F E+ N ++ +A S
Sbjct: 278 ------ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331
Query: 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243
A A V LE ++ V + DVF+ S LIDM+ KC
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC-------------------- 371
Query: 244 EGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVS 290
GS + A L F+ R+++ W +I + G + + F+
Sbjct: 372 --GSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429
Query: 291 LLSGCSHSGPVTKGKHYFTAMAKFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKP 347
LL C+HSG V +G +F MA ++ C++DLLG +G L +A ++I MP +P
Sbjct: 430 LLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQP 489
Query: 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
+WGALL AC H + +L E + L +D
Sbjct: 490 GVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/323 (19%), Positives = 124/323 (38%), Gaps = 62/323 (19%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT+ ++ C + +++M +H V + F +D + I ++ KC
Sbjct: 120 FTFPHLLKA---CSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCR-------- 168
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ G R + +PER +VSW ++S ++G E L F ++
Sbjct: 169 ------------RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM 216
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
+ + +A + DL+ G +H+ VV M G+E
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM----------------------GLE 254
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
+ +L TMYA+ G A + F+ M N+I W +IS +++ G + F
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFV--CMVDLLGLSGLL 333
S +S C+ G + + + + + + Y F+ ++D+ G +
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374
Query: 334 GEAKKLIDEMPSKPTCVIWGALL 356
A+ + D + V+W A++
Sbjct: 375 EGARLVFDRTLDR-DVVVWSAMI 396
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 104/264 (39%), Gaps = 31/264 (11%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +P + WN +I +R+ + L + + S + A + +
Sbjct: 75 VFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH 134
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC-----------GCNGIESSIQIGKALV 239
L+ G +H++V + DVFV +GLI +Y KC G E +I A+V
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194
Query: 240 TMYAEGGSTQKADLAFELMSRRNM-ISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCS-H 297
+ YA+ G +A F M + ++ W+ L+S + F L G S H
Sbjct: 195 SAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNA---------FTCLQDLKQGRSIH 245
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ V G + T Y C G + AK L D+M S P ++W A++
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKC--------GQVATAKILFDKMKS-PNLILWNAMIS 296
Query: 358 ACCSHYNTKLAELVMRNLLQLDVK 381
+ + A + ++ DV+
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVR 320
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 52 YNTMINGGVR------------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99
++ MIN VR C VG+++ A ++ V + + D I+ + IDM K
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370
Query: 100 CGAVDYAESAFLRMLNPSLFCWKFGII 126
CG+V+ A F R L+ + W I+
Sbjct: 371 CGSVEGARLVFDRTLDRDVVVWSAMIV 397
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 145/321 (45%), Gaps = 51/321 (15%)
Query: 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF---GIIR------LLIMFQKMPERD 139
+ + I M+ K G A F M + + W G +R MF KMPERD
Sbjct: 111 VGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERD 170
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
L+SW MI+ + G+ E L F E+ G + A +A ++ L +G +H
Sbjct: 171 LISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHR 230
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259
V+ + +V V + LID+Y +CGC +E + Q+ F M
Sbjct: 231 YVLSQDFKNNVRVSNSLIDLYCRCGC--VEFARQV--------------------FYNME 268
Query: 260 RRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKH 306
+R ++SW +I F+ G + +F F L+ CSH G V +G
Sbjct: 269 KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLR 328
Query: 307 YFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCS 361
YF M K Y ++ C+VDL +G L +A KL+ MP KP V+ G+LL AC +
Sbjct: 329 YFQIM-KCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSN 387
Query: 362 HYNT-KLAELVMRNLLQLDVK 381
H N LAE +M++L L+VK
Sbjct: 388 HGNNIVLAERLMKHLTDLNVK 408
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 64/231 (27%)
Query: 34 IDDDYRVFCDIGPRYLFTYNTMINGGVR-------------------------------- 61
+D+ ++F + R L ++ MING V+
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNA 215
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C +G + L +H V F ++ ++ S ID++ +CG V++A
Sbjct: 216 CTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQ------------- 262
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+F M +R +VSWN++I +G E+L F ++ GF ++ + A
Sbjct: 263 ---------VFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGA 313
Query: 182 FSARASVYDLEWG----------PHLHSRVVHMEPSLDVFVGSGLIDMYLK 222
+A + V +E G + R+ H +D++ +G ++ LK
Sbjct: 314 LTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALK 364
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 107/268 (39%), Gaps = 35/268 (13%)
Query: 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSR 200
VSW + I++LTR+G E F ++ G + + + S D G
Sbjct: 37 VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSG---CGDFTSGSEALGD 93
Query: 201 VVH---MEPSLD---VFVGSGLIDMYLKCGC--------NGIESSIQIG-KALVTMYAEG 245
++H + LD V VG+ +I MY K G + +E + ++ Y
Sbjct: 94 LLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRS 153
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLL 292
G A F+ M R++ISW +I+ F + G E+ +F ++ L
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213
Query: 293 SGCSHSGPVTKG--KHYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTC 349
+ C++ G ++ G H + F ++DL G + A+++ M K T
Sbjct: 214 NACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNM-EKRTV 272
Query: 350 VIWGALLGACCSHYNTKLAELVMRNLLQ 377
V W +++ ++ N + + R + +
Sbjct: 273 VSWNSVIVGFAANGNAHESLVYFRKMQE 300
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 150/329 (45%), Gaps = 63/329 (19%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LHG K S+ ++ S I M++KCG+V+ +F
Sbjct: 178 LHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRR----------------------LFD 215
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+MP + L++WN +IS +++G ++ L + ++ + G + S+ A
Sbjct: 216 EMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCA------- 268
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
HL ++ + E VG L++ NG ++ + A ++MYA G+ KA
Sbjct: 269 --HLGAKKIGHE------VGK-LVE------SNGFVPNVFVSNASISMYARCGNLAKARA 313
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300
F++M ++++SW +I + G+ E F FV +LS CSHSG
Sbjct: 314 VFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGL 373
Query: 301 VTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGAL 355
KG F AM K Y ++ C+VDLLG +G L EA + I+ MP +P +WGAL
Sbjct: 374 TDKGLELFRAM-KREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGAL 432
Query: 356 LGACCSHYNTKLAELVMRNLLQLDVKVFG 384
LGAC H N +AEL +++ + G
Sbjct: 433 LGACKIHKNVDMAELAFAKVIEFEPNNIG 461
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 128/350 (36%), Gaps = 101/350 (28%)
Query: 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP-------------SLF 119
LH V K ++ + + I M+ KCG V A F NP S +
Sbjct: 74 QLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEE--NPQSSQLSVCYNALISGY 131
Query: 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE-LWNHGFGLSSMLY 178
+ MF++M E T +S+ + G LCT E LW
Sbjct: 132 TANSKVTDAAYMFRRMKE-------TGVSVDSVTMLGLVPLCTVPEYLW----------- 173
Query: 179 ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238
G LH + V +V V + I MY+KCG S++ G+ L
Sbjct: 174 --------------LGRSLHGQCVKGGLDSEVAVLNSFITMYMKCG------SVEAGRRL 213
Query: 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ----------------AGVLEKP 282
F+ M + +I+W +IS +SQ +GV P
Sbjct: 214 ----------------FDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257
Query: 283 RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV-------CMVDLLGLSGLLGE 335
F VS+LS C+H G G + K + FV + + G L +
Sbjct: 258 ---FTLVSVLSSCAHLGAKKIGHE----VGKLVESNGFVPNVFVSNASISMYARCGNLAK 310
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
A+ + D MP K + V W A++G H ++ ++ ++++ ++ G+
Sbjct: 311 ARAVFDIMPVK-SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGA 359
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 79/228 (34%), Gaps = 33/228 (14%)
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
WN + L E++ + + G + + + AS+ G LH V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 203 HMEPSLDVFVGSGLIDMYLKCGC----------NGIESSIQIG-KALVTMYAEGGSTQKA 251
+ FV + LI MY KCG N S + + AL++ Y A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLE---KPRFFFFFVSLLSGCSHSGPVTKGKHYF 308
F R M V + + + G++ P + + SL C V G
Sbjct: 141 AYMF-----RRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQC-----VKGGLDSE 190
Query: 309 TAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
A+ T Y C G + ++L DEMP K + W A++
Sbjct: 191 VAVLNSFITMYMKC--------GSVEAGRRLFDEMPVK-GLITWNAVI 229
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 164/377 (43%), Gaps = 73/377 (19%)
Query: 28 SIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE 87
++F +++ D G FT+ T++ +R +G + +HGL+ K+ + S
Sbjct: 139 TVFAEMMRSD-------GKPNEFTFATVLTSCIRASGLG---LGKQIHGLIVKWNYDSHI 188
Query: 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
+ S +DM+ K G + A +F+ +PERD+VS +I
Sbjct: 189 FVGSSLLDMYAKAGQIKEARE----------------------IFECLPERDVVSCTAII 226
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ + G E L F L + G + + YA+ +A + + L+ G H V+ E
Sbjct: 227 AGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELP 286
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
+ + LIDMY KCG + A F+ M R ISW
Sbjct: 287 FYAVLQNSLIDMYSKCG----------------------NLSYARRLFDNMPERTAISWN 324
Query: 268 VLISAFSQAG----VLEKPRFF----------FFFVSLLSGCSHSGPVTKGKHYFTAMAK 313
++ +S+ G VLE R +++LSGCSH G + F M
Sbjct: 325 AMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVA 384
Query: 314 FTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLA 368
Y T ++ C+VD+LG +G + EA + I MPSKPT + G+LLGAC H + +
Sbjct: 385 GEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIG 444
Query: 369 ELVMRNLLQLDVKVFGS 385
E V R L++++ + G+
Sbjct: 445 ESVGRRLIEIEPENAGN 461
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 39/248 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+ +MPE+++VSW MIS ++ G E L F E+ + +AT ++
Sbjct: 109 VLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASG 168
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
L G +H +V +FVGS L+D MYA+ G ++
Sbjct: 169 LGLGKQIHGLIVKWNYDSHIFVGSSLLD----------------------MYAKAGQIKE 206
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSH 297
A FE + R+++S +I+ ++Q G+ E+ F + SLL+ S
Sbjct: 207 AREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSG 266
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
+ GK + + Y V ++D+ G L A++L D MP + T + W A
Sbjct: 267 LALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER-TAISWNA 325
Query: 355 LLGACCSH 362
+L H
Sbjct: 326 MLVGYSKH 333
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 23/142 (16%)
Query: 238 LVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLE--------------KPR 283
L+ Y + + A + M +N++SW +IS +SQ G KP
Sbjct: 93 LLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPN 152
Query: 284 FFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCY-FV--CMVDLLGLSGLLGEAKKLI 340
F F ++L+ C + + GK + K+ Y + FV ++D+ +G + EA+++
Sbjct: 153 -EFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIF 211
Query: 341 DEMPSKP----TCVIWG-ALLG 357
+ +P + T +I G A LG
Sbjct: 212 ECLPERDVVSCTAIIAGYAQLG 233
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/445 (24%), Positives = 182/445 (40%), Gaps = 108/445 (24%)
Query: 1 MKACGSLKSLPIARKIHA--QLISTCLISSIFLQLID---------DDYRVFCDIGPRYL 49
+KACG L +L +IH I ++ + L+D + +VF I R L
Sbjct: 114 LKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSL 173
Query: 50 FTYNTMINGGVR----------------------------------CLCVGNIKMALHLH 75
++N MI G V C G I +H
Sbjct: 174 ISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIH 233
Query: 76 GLVKK--FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
G + + F+ S +I S +D++VKCG + A AF
Sbjct: 234 GFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAF----------------------D 271
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
++ E+ ++SW+++I + G E + F L + S ++ A L
Sbjct: 272 QIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQ 331
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
G + + V + L+ V + ++DMYLKCG +A+
Sbjct: 332 GKQMQALAVKLPSGLETSVLNSVVDMYLKCGL----------------------VDEAEK 369
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-------------FVSLLSGCSHSGP 300
F M +++ISW V+I+ + + G+ +K F+ ++++LS CSHSG
Sbjct: 370 CFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGM 429
Query: 301 VTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ +G+ F+ + + ++ C+VDLLG +G L EAK LID MP KP IW LL
Sbjct: 430 IKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLL 489
Query: 357 GACCSHYNTKLAELVMRNLLQLDVK 381
C H + +L + V + LL++D K
Sbjct: 490 SLCRVHGDIELGKEVGKILLRIDAK 514
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 45/247 (18%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F MPER++VSW+ ++S +G +L F E+ G + ++T A +
Sbjct: 63 VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122
Query: 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250
LE G +H + + + V VG+ L+DMY KC G +
Sbjct: 123 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC----------------------GRINE 160
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAG----------------VLEKPRFFFFFVSLLSG 294
A+ F + R++ISW +I+ F AG + E+P F SLL
Sbjct: 161 AEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPD-EFTLTSLLKA 219
Query: 295 CSHSGPVTKGKHYFTAMAKFTYTCYFVC-----MVDLLGLSGLLGEAKKLIDEMPSKPTC 349
CS +G + GK + + + C +VDL G L A+K D++ K T
Sbjct: 220 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEK-TM 278
Query: 350 VIWGALL 356
+ W +L+
Sbjct: 279 ISWSSLI 285
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 100/238 (42%), Gaps = 63/238 (26%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT++T + C + ++ L +HG K F + S +DM+ KCG ++ AE
Sbjct: 108 FTFSTNLKA---CGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKV 164
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF------ 163
F R+++ R L+SWN MI+ G+G + L TF
Sbjct: 165 FRRIVD----------------------RSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 202
Query: 164 -IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME---PSLDVFVGSGLIDM 219
I+ F L+S+L A S+ +Y G +H +V PS GS L+D+
Sbjct: 203 NIKERPDEFTLTSLLKAC--SSTGMIYA---GKQIHGFLVRSGFHCPSSATITGS-LVDL 256
Query: 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
Y+KCG +++ A AF+ + + MISW LI ++Q G
Sbjct: 257 YVKCG---------------YLFS-------ARKAFDQIKEKTMISWSSLILGYAQEG 292
>sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g28640
OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1
Length = 504
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 166/370 (44%), Gaps = 71/370 (19%)
Query: 30 FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLH-GLVKKFYFVSDES 88
FL ++ ++ DI P YL T++ +I V CL + +H +VK F+SD
Sbjct: 101 FLLMVKEEEE---DIAPSYL-TFHFLI---VACLKACFFSVGKQIHCWVVKNGVFLSDS- 152
Query: 89 IAKSSIDMHVKCGAVD-YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
HV+ G + Y E L + +F ++P+ D+V W+ ++
Sbjct: 153 --------HVQTGVLRIYVEDKLL--------------LDARKVFDEIPQPDVVKWDVLM 190
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ R G G E L F E+ G TA +A A V L G +H
Sbjct: 191 NGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHE-------- 242
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
FV + IES + +G ALV MYA+ G + A F+ ++RRN+ SW
Sbjct: 243 ---FVKKK----------SWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWA 289
Query: 268 VLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFTAM-A 312
LI ++ G +K + +L+ C+H G + +G+ M A
Sbjct: 290 ALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEA 349
Query: 313 KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
++ T ++ C+VDL+ +G L +A LI++MP KP +WGALL C +H N +L E
Sbjct: 350 RYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGE 409
Query: 370 LVMRNLLQLD 379
L ++NLL L+
Sbjct: 410 LAVKNLLDLE 419
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 160/359 (44%), Gaps = 60/359 (16%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLV---KKFYFVSDESIAKSSIDMHVKCGAVDYA 106
FTY ++I C G +++ +H V + F F D S+ + ++ KCG D A
Sbjct: 287 FTYPSVIRA---CATAGLLQLGKQVHAYVLRREDFSFHFDNSL----VSLYYKCGKFDEA 339
Query: 107 ESAFLRMLNPSLFCWKF---------GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF 157
+ F +M L W I ++F++M E++++SW MIS L +GFG
Sbjct: 340 RAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGE 399
Query: 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217
E L F + GF ++ A + A + G H++++ +
Sbjct: 400 EGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKI------------- 446
Query: 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277
G +SS+ G AL+TMYA+ G ++A F M + +SW LI+A Q G
Sbjct: 447 ---------GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHG 497
Query: 278 -------VLE-------KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCY 319
V E +P +++L+ CSH+G V +G+ YF +M +
Sbjct: 498 HGAEAVDVYEEMLKKGIRPDRITL-LTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADH 556
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ ++DLL SG +A+ +I+ +P KPT IW ALL C H N +L + L L
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGL 615
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 111/267 (41%), Gaps = 27/267 (10%)
Query: 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199
LV++N MIS GF E L + + G L Y + A A+ L+ G +H+
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310
Query: 200 RVVHMEPSLDVFVGSGLIDMYLKCG----CNGIESSIQIG-----KALVTMYAEGGSTQK 250
V+ E + L+ +Y KCG I + AL++ Y G +
Sbjct: 311 YVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE 369
Query: 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFF------------FFFVSLLSGCSH 297
A L F+ M +N++SWM++IS ++ G E+ + F + F + C+
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAV 429
Query: 298 SGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
G G+ Y + K + ++ + G++ EA+++ MP + V W A
Sbjct: 430 LGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDS-VSWNA 488
Query: 355 LLGACCSHYNTKLAELVMRNLLQLDVK 381
L+ A H + A V +L+ ++
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIR 515
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 144/356 (40%), Gaps = 44/356 (12%)
Query: 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP---------S 117
++++A +HG + F F I ID++ K ++YA F + P S
Sbjct: 29 SLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88
Query: 118 LFCWKFGIIRLLIMFQKMP--ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175
+C I +F+K P RD V +N MI+ + + G+ + F ++ + GF +
Sbjct: 89 GYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDN 148
Query: 176 MLYATAFSARASVYDLEWG-PHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------- 227
+A+ + A V D E H+ + V + L+ +Y KC +
Sbjct: 149 FTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSAR 208
Query: 228 ------IESSIQIGKALVTMYAEGGSTQKADLAFELMSRR-NMISWMVLISAFSQAG--- 277
+E + ++T Y + G + E M ++++ +IS + G
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268
Query: 278 -VLEKPRFF---------FFFVSLLSGCSHSGPVTKGKH---YFTAMAKFTYTCYFVCMV 324
LE R F + S++ C+ +G + GK Y F++ + +V
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFH-FDNSLV 327
Query: 325 DLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380
L G EA+ + ++MP+K V W ALL S + A+L+ + + + ++
Sbjct: 328 SLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 151/344 (43%), Gaps = 48/344 (13%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C V + + +H V + + + ++ + CG +D A F M + W
Sbjct: 246 CSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISW 305
Query: 122 --------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172
+ G ++L F +MP RD +SW MI R G E+L F E+ + G
Sbjct: 306 TSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI 365
Query: 173 LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSI 232
+ +A A + LE G + + + N I++ +
Sbjct: 366 PDEFTMVSVLTACAHLGSLEIGEWIKTYIDK----------------------NKIKNDV 403
Query: 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF----- 287
+G AL+ MY + G ++KA F M +R+ +W ++ + G ++ FF
Sbjct: 404 VVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDM 463
Query: 288 --------FVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGE 335
++ +LS C+HSG V + + +F M ++ CMVD+LG +GL+ E
Sbjct: 464 SIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKE 523
Query: 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
A +++ +MP P ++WGALLGA H + +AEL + +L+L+
Sbjct: 524 AYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELE 567
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 127/312 (40%), Gaps = 56/312 (17%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH V KF S+ + + + M+ CG +D A F R
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRC------------------- 197
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+ D+ SWN MIS R E++ +E+ + +S+ SA + V D +
Sbjct: 198 ---KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDL 254
Query: 194 GPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL-----------VT 240
+H V EPSL + + L++ Y CG ++ +++I +++ V
Sbjct: 255 CKRVHEYVSECKTEPSLR--LENALVNAYAACG--EMDIAVRIFRSMKARDVISWTSIVK 310
Query: 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------------FF 287
Y E G+ + A F+ M R+ ISW ++I + +AG E F F
Sbjct: 311 GYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFT 370
Query: 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMP 344
VS+L+ C+H G + G+ T + K V ++D+ G +A+K+ +M
Sbjct: 371 MVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD 430
Query: 345 SKPTCVIWGALL 356
+ W A++
Sbjct: 431 QRDK-FTWTAMV 441
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 22/131 (16%)
Query: 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM 113
TM++ C +G++++ + + K +D + + IDM+ KCG + A+
Sbjct: 370 TMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQK----- 424
Query: 114 LNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173
+F M +RD +W M+ L +G G E + F ++ +
Sbjct: 425 -----------------VFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467
Query: 174 SSMLYATAFSA 184
+ Y SA
Sbjct: 468 DDITYLGVLSA 478
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA-RASVY 189
+F K+PE D+V WN MI ++ E + ++ + G S + + +
Sbjct: 90 LFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGG 149
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
L G LH VV G+ S++ + ALV MY+ G
Sbjct: 150 ALACGKKLHCHVVKF----------------------GLGSNLYVQNALVKMYSLCGLMD 187
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEK 281
A F+ + ++ SW ++IS +++ E+
Sbjct: 188 MARGVFDRRCKEDVFSWNLMISGYNRMKEYEE 219
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 144/336 (42%), Gaps = 50/336 (14%)
Query: 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125
G++ + +H + K S+ S+ S IDM+ KCG ++ AE R F + +
Sbjct: 496 GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR------FFQRANV 549
Query: 126 IRLLIMFQKMPERDL----VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
+ +KM + L VSWN++IS + F + G YAT
Sbjct: 550 SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATV 609
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
A++ G +H++V+ E DV++ S L+DMY KC
Sbjct: 610 LDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKC------------------ 651
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FF 288
G + L FE RR+ ++W +I ++ G E+ F F
Sbjct: 652 ----GDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 707
Query: 289 VSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMP 344
+S+L C+H G + KG YF M + ++ MVD+LG SG + A +LI EMP
Sbjct: 708 ISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 767
Query: 345 SKPTCVIWGALLGACCSHYNT-KLAELVMRNLLQLD 379
+ VIW LLG C H N ++AE LL+LD
Sbjct: 768 FEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLD 803
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 138/346 (39%), Gaps = 69/346 (19%)
Query: 62 CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW 121
C + + + + +HG+V + +D A + +DM+ K + ES
Sbjct: 190 CSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAK--GKRFVES------------- 234
Query: 122 KFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATA 181
L +FQ +PE++ VSW+ +I+ ++ L F E+ G+S +YA+
Sbjct: 235 -------LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASV 287
Query: 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241
+ A++ +L G LH+ + + + D V + +DMY KC
Sbjct: 288 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKC------------------ 329
Query: 242 YAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------FFVSLL 292
+ Q A + F+ N S+ +I+ +SQ K F F L
Sbjct: 330 ----DNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 385
Query: 293 SG----CSHSGPVTKGKHYFTAMAKFTYT---CYFVCMVDLLGLSGLLGEAKKLIDEMPS 345
SG C+ +++G + K + + C +D+ G L EA ++ DEM
Sbjct: 386 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 445
Query: 346 KPTCVIWGALLGACCSHYNTKLAELV------MRNLLQLDVKVFGS 385
+ V W A++ A N K E + +R+ ++ D FGS
Sbjct: 446 RDA-VSWNAIIAA--HEQNGKGYETLFLFVSMLRSRIEPDEFTFGS 488
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F MP RD+VSWN+M+S ++G +++ F+++ G +A + + D
Sbjct: 137 FNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDT 196
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
G +H VV + DV S L+DMY K GK V ++
Sbjct: 197 SLGMQIHGIVVRVGCDTDVVAASALLDMYAK------------GKRFV----------ES 234
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLEKP-RFFFFFVSLLSGCSHS 298
F+ + +N +SW +I+ Q +L +FF + +G S S
Sbjct: 235 LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQS 282
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTY T+++ C + + + +H V K SD I + +DM+ KCG D +S
Sbjct: 604 FTYATVLD---TCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCG--DLHDSR 658
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTF 163
+MF+K RD V+WN MI HG G E + F
Sbjct: 659 --------------------LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLF 692
>sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protein At3g28660
OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
Length = 504
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 166/370 (44%), Gaps = 71/370 (19%)
Query: 30 FLQLIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLH-GLVKKFYFVSDES 88
FL ++ ++ DI P YL T++ +I V CL + +H +VK F+SD
Sbjct: 101 FLLMVKEEEE---DITPSYL-TFHFLI---VACLKACFFSVGKQIHCWVVKNGVFLSDG- 152
Query: 89 IAKSSIDMHVKCGAVD-YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147
HV+ G + Y E L F ++ F ++P+ D+V W+ ++
Sbjct: 153 --------HVQTGVLRIYVEDKLL-----------FDARKV---FDEIPQPDVVKWDVLM 190
Query: 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207
+ R G G E L F E+ G TA +A A V L G +H
Sbjct: 191 NGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHE-------- 242
Query: 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWM 267
FV IES + +G ALV MYA+ G + A FE ++RRN+ SW
Sbjct: 243 ---FVKKK----------RWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWA 289
Query: 268 VLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFTAM-A 312
LI ++ G +K + +L+ C+H G + +G+ M A
Sbjct: 290 ALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEA 349
Query: 313 KFTYTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAE 369
++ T ++ C+VDL+ +G L +A LI++MP KP +WGALL C +H N +L E
Sbjct: 350 RYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGE 409
Query: 370 LVMRNLLQLD 379
L ++NLL L+
Sbjct: 410 LAVQNLLDLE 419
>sp|Q84MA3|PP345_ARATH Pentatricopeptide repeat-containing protein At4g32430,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2
SV=1
Length = 763
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 155/344 (45%), Gaps = 70/344 (20%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C IK L +HGL K FVS+ S+ S I ++ K A++ A+ AF
Sbjct: 384 CNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAF------------- 430
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI----ELWNHGFGLSSMLYA 179
+ + R+++SWN MIS ++GF E L F+ E + + S+L A
Sbjct: 431 ---------EDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTFGSVLNA 481
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
AF+ SV + G H+ ++ + G+ S + AL+
Sbjct: 482 IAFAEDISV---KQGQRCHAHLLKL----------------------GLNSCPVVSSALL 516
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF------------ 287
MYA+ G+ +++ F MS++N W +ISA+S G E F
Sbjct: 517 DMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLV 576
Query: 288 -FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLLGEAKKLID 341
F+S+L+ C+ G V KG F M + Y ++ CMVD+LG +G L EA++L+
Sbjct: 577 TFLSVLTACNRKGMVDKGYEIFNMMIE-VYNLEPSHEHYSCMVDMLGRAGRLKEAEELMS 635
Query: 342 EMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFGS 385
E+P P + ++LG+C H N K+ V +++ ++ GS
Sbjct: 636 EVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGS 679
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 52/232 (22%)
Query: 50 FTYNTMINGGVRCLCVGN--IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107
FTY+T ++ CVG+ + L L V K SD + S I M+ + G+ A
Sbjct: 175 FTYSTALS-----FCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGAR 229
Query: 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIEL 166
+F +M +D++SWN+++S L++ G FGFE + F ++
Sbjct: 230 R----------------------VFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDM 267
Query: 167 WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCN 226
G L + + + + DL+ +H GL C
Sbjct: 268 MREGVELDHVSFTSVITTCCHETDLKLARQIH----------------GL------CIKR 305
Query: 227 GIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGV 278
G ES +++G L++ Y++ G + F MS RN++SW +IS+ V
Sbjct: 306 GYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDDAV 357
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 55/220 (25%)
Query: 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKF 123
C G++K +HG F S ++ + + M+ K G D A
Sbjct: 88 CRGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNA----------------- 130
Query: 124 GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFE----TLCTFIELWNHGFGLSSMLYA 179
L +F+ + + D+VSWNT++S GF+ L + + + G + Y+
Sbjct: 131 -----LCIFENLVDPDVVSWNTILS-------GFDDNQIALNFVVRMKSAGVVFDAFTYS 178
Query: 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239
TA S G L S VV G+ES + +G + +
Sbjct: 179 TALSFCVGSEGFLLGLQLQSTVVK----------------------TGLESDLVVGNSFI 216
Query: 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL 279
TMY+ GS + A F+ MS ++MISW L+S SQ G
Sbjct: 217 TMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTF 256
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 51/321 (15%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKF-----GIIRLLIMFQ------KMPERDLVS 142
I M+ +CG V+ A + L F G I+L M Q + +RD+V+
Sbjct: 321 ISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVA 380
Query: 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202
W MI +HG E + F + G +S A S +S+ L G +H V
Sbjct: 381 WTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAV 440
Query: 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS-RR 261
SG I S+ + AL+TMYA+ G+ A AF+L+ R
Sbjct: 441 K----------SGEI------------YSVSVSNALITMYAKAGNITSASRAFDLIRCER 478
Query: 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYF 308
+ +SW +I A +Q G E+ F +V + S C+H+G V +G+ YF
Sbjct: 479 DTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYF 538
Query: 309 TAMAKFTYT----CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364
M ++ CMVDL G +GLL EA++ I++MP +P V WG+LL AC H N
Sbjct: 539 DMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKN 598
Query: 365 TKLAELVMRNLLQLDVKVFGS 385
L ++ LL L+ + G+
Sbjct: 599 IDLGKVAAERLLLLEPENSGA 619
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 58 GGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117
RC+ G +H + K + S++ S ++M+ KCG A+ F RM+
Sbjct: 157 AATRCMETGK-----KVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRD 211
Query: 118 LFCW--------KFGIIRL-LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168
+ W + G + L + F++M ERD+V+WN+MIS + G+ L F ++
Sbjct: 212 ISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLR 271
Query: 169 HG-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227
A+ SA A++ L G +HS +V + V + LI MY +CG G
Sbjct: 272 DSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCG--G 329
Query: 228 IESS-------------IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFS 274
+E++ I+ AL+ Y + G +A F + R++++W +I +
Sbjct: 330 VETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYE 389
Query: 275 QAG 277
Q G
Sbjct: 390 QHG 392
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 31/191 (16%)
Query: 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191
F ++P+RD VSW TMI G + + ++ G + ++ A+ +
Sbjct: 103 FDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCM 162
Query: 192 EWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251
E G +HS +V + G+ ++ + +L+ MYA+ G A
Sbjct: 163 ETGKKVHSFIVKL----------------------GLRGNVSVSNSLLNMYAKCGDPMMA 200
Query: 252 DLAFELMSRRNMISWMVLISAFSQAGVLE---------KPRFFFFFVSLLSGCSHSGPVT 302
F+ M R++ SW +I+ Q G ++ R + S++SG + G
Sbjct: 201 KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDL 260
Query: 303 KGKHYFTAMAK 313
+ F+ M +
Sbjct: 261 RALDIFSKMLR 271
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 125/269 (46%), Gaps = 46/269 (17%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190
+F +MPER LVSWN+MI L R G L F E+ F + SA A +
Sbjct: 208 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGS 266
Query: 191 LEWGPHLHS---RVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
L G H+ R ++ ++DV V + LI+MY KCG S
Sbjct: 267 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG----------------------S 304
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---------------FFVSLL 292
+ A+ F+ M +R++ SW +I F+ G E+ FF FV LL
Sbjct: 305 LRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLL 364
Query: 293 SGCSHSGPVTKGKHYFTAMAK----FTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348
C+H G V KG+ YF M + ++ C+VDL+ +G + EA ++ MP KP
Sbjct: 365 IACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPD 424
Query: 349 CVIWGALLGACCSH-YNTKLAELVMRNLL 376
VIW +LL ACC + +L+E + RN++
Sbjct: 425 AVIWRSLLDACCKKGASVELSEEIARNII 453
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 33/191 (17%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC + +++H Q++ +++ +D +VF ++ R L
Sbjct: 158 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 217
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGA------- 102
++N+MI+ VR G AL L +++ F D +S + G+
Sbjct: 218 VSWNSMIDALVR---FGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWA 273
Query: 103 ---------VDYAESAFLRMLNPSLFCWKFGIIRLL-IMFQKMPERDLVSWNTMISILTR 152
VD A ++ ++C K G +R+ +FQ M +RDL SWN MI
Sbjct: 274 HAFLLRKCDVDVAMDVLVKNSLIEMYC-KCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 332
Query: 153 HGFGFETLCTF 163
HG E + F
Sbjct: 333 HGRAEEAMNFF 343
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 34/131 (25%)
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
A ++ G +H ++V DV+V +GLI +Y CGC + +
Sbjct: 162 AYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKV------------- 208
Query: 246 GSTQKADLAFELMSRRNMISWMVLISAFSQAG--------VLEKPRFF----FFFVSLLS 293
F+ M R+++SW +I A + G E R F + S+LS
Sbjct: 209 ---------FDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLS 259
Query: 294 GCSHSGPVTKG 304
C+ G ++ G
Sbjct: 260 ACAGLGSLSLG 270
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 179/419 (42%), Gaps = 73/419 (17%)
Query: 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFT 51
AC L+ + + R +H+ L L + + + ++F +I R +
Sbjct: 141 ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS 200
Query: 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
+N+MI+G G K A+ L +++ F DE ++ + M C + +
Sbjct: 201 WNSMISGYSEA---GYAKDAMDLFRKMEEEGFEPDE---RTLVSMLGACSHLGDLRTG-- 252
Query: 112 RMLNPSLFCWKFGIIRLL------------------IMFQKMPERDLVSWNTMISILTRH 153
R+L K G+ L +F +M ++D V+W MI++ +++
Sbjct: 253 RLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQN 312
Query: 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213
G E F E+ G + +T SA SV LE G + + + +++V
Sbjct: 313 GKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVA 372
Query: 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273
+GL+DMY KCG +E ++++ FE M +N +W +I+A+
Sbjct: 373 TGLVDMYGKCG--RVEEALRV--------------------FEAMPVKNEATWNAMITAY 410
Query: 274 SQAGVLEKPRFFF----------FFVSLLSGCSHSGPVTKGKHYFTAMAKF----TYTCY 319
+ G ++ F F+ +LS C H+G V +G YF M+ +
Sbjct: 411 AHQGHAKEALLLFDRMSVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEH 470
Query: 320 FVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+ ++DLL +G+L EA + ++ P KP ++ A+LGAC + + E MR L+++
Sbjct: 471 YTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEM 529
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 132/338 (39%), Gaps = 64/338 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FTYN + + C + I + +H + K D I S I M+ KCG V YA
Sbjct: 133 FTYNFVF---IACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARK- 188
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+F ++ ERD VSWN+MIS + G+ + + F ++
Sbjct: 189 ---------------------LFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEE 227
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
GF + A + + DL G L + + L F+GS LI MY KC
Sbjct: 228 GFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKC------ 281
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-- 287
G A F M +++ ++W +I+ +SQ G + FF
Sbjct: 282 ----------------GDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM 325
Query: 288 -----------FVSLLSGCSHSGPVTKGKHYFTAMAKFT--YTCYFVC-MVDLLGLSGLL 333
++LS C G + GK T ++ + + Y +VD+ G G +
Sbjct: 326 EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 385
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELV 371
EA ++ + MP K W A++ A + K A L+
Sbjct: 386 EEALRVFEAMPVKNEAT-WNAMITAYAHQGHAKEALLL 422
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 95/243 (39%), Gaps = 40/243 (16%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFET-LCTFIELWNHGFGLSSMLYATAFSARASVY 189
+F E + S+N MI LT E L + + G Y F A A +
Sbjct: 87 LFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLE 146
Query: 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249
++ G +HS + + DV + LI MY KCG Q+G A
Sbjct: 147 EIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCG--------QVGYARKL--------- 189
Query: 250 KADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCS 296
F+ ++ R+ +SW +IS +S+AG + F VS+L CS
Sbjct: 190 -----FDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACS 244
Query: 297 HSGPVTKGK--HYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG 353
H G + G+ K + + ++ + G G L A+++ ++M K V W
Sbjct: 245 HLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDR-VAWT 303
Query: 354 ALL 356
A++
Sbjct: 304 AMI 306
>sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170
OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1
Length = 467
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 147/325 (45%), Gaps = 50/325 (15%)
Query: 77 LVKKFYFVSDESIAKSSIDMHVKCGAV--DYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134
++K + D ++ K + V+ G V ++ ES F+ +L+C +F +
Sbjct: 123 VIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFI-----TLYCKAGEFENARKVFDE 177
Query: 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194
PER L SWN +I L G E + F+++ G + ++ + DL
Sbjct: 178 NPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLA 237
Query: 195 PHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKAD 252
LH V+ E D+ + + LIDMY KCG + S I
Sbjct: 238 FQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASHI-------------------- 277
Query: 253 LAFELMSRRNMISWMVLISAFSQAG-VLEKPRFF------------FFFVSLLSGCSHSG 299
FE M +RN++SW +I ++ G LE F FV +LS C H G
Sbjct: 278 --FEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGG 335
Query: 300 PVTKGKHYFTAMAKFTYT-----CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGA 354
V +GK YF AM K + ++ C+VDLL G L EAKK+++EMP KP ++WG
Sbjct: 336 LVEEGKTYF-AMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGC 394
Query: 355 LLGACCSHYNTKLAELVMRNLLQLD 379
L+G C + ++AE V +++L+
Sbjct: 395 LMGGCEKFGDVEMAEWVAPYMVELE 419
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 24/133 (18%)
Query: 54 TMINGGVRCLCVGNIKMALHLHG--LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
TM++ C +G++ +A LH L K SD + S IDM+ KCG +D A
Sbjct: 220 TMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASH--- 276
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
+F++M +R++VSW++MI +G E L F ++ G
Sbjct: 277 -------------------IFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGV 317
Query: 172 GLSSMLYATAFSA 184
+ + + SA
Sbjct: 318 RPNKITFVGVLSA 330
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 157/361 (43%), Gaps = 49/361 (13%)
Query: 47 RYLFTYNTMINGGVRCLCVGNIKMALH--LHGLVKKFYFVSDESIAKSSIDMHVKCGAVD 104
R +N G+ CV + ++ L+ HG V F+S+ ++ S ID + KCG ++
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 105 YAESAFLRMLNPSLFCW--------KFGIIRLL-IMFQKMPERDLVSWNTMISILTRHGF 155
A+ F M + W K G + +F +MPE++ VSW +I+ R G
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGS 291
Query: 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215
G L F ++ G +++ A AS+ L G +H ++ + V S
Sbjct: 292 GNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISS 351
Query: 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275
LIDMY K G +E+S ++ + K D F W +ISA +Q
Sbjct: 352 LIDMYSKSG--SLEASERVFRIC---------DDKHDCVF----------WNTMISALAQ 390
Query: 276 AGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAK----FTYTC 318
G+ K V +L+ CSHSG V +G +F +M
Sbjct: 391 HGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQE 450
Query: 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
++ C++DLLG +G E + I+EMP +P IW A+LG C H N +L + L++L
Sbjct: 451 HYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKL 510
Query: 379 D 379
D
Sbjct: 511 D 511
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 127/306 (41%), Gaps = 40/306 (13%)
Query: 94 IDMHVKCGAVDYAESAFLRMLNPSLFCW--------KFG-IIRLLIMFQKMPERDLVSWN 144
I M++KCG A F +M +L+ W K G ++R ++F MPERD+VSWN
Sbjct: 89 IGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWN 148
Query: 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204
TM+ + G E L + E G + +A +A L+ H +V+
Sbjct: 149 TMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVA 208
Query: 205 EPSLDVFVGSGLIDMYLKCGCNGIESS-----------IQIGKALVTMYAEGGSTQKADL 253
+V + +ID Y KCG +ES+ I I L++ YA+ G + A+
Sbjct: 209 GFLSNVVLSCSIIDAYAKCG--QMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEK 266
Query: 254 AFELMSRRNMISWMVLISAFSQAG----VLE----------KPRFFFFFVSLLSGCSHSG 299
F M +N +SW LI+ + + G L+ KP F F S L +
Sbjct: 267 LFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPE-QFTFSSCLCASASIA 325
Query: 300 PVTKGKHYFTAMAKFTYTCYFV---CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
+ GK M + + ++D+ SG L ++++ K CV W ++
Sbjct: 326 SLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMI 385
Query: 357 GACCSH 362
A H
Sbjct: 386 SALAQH 391
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 32/252 (12%)
Query: 148 SILTRHGFGFE---TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGP--HLHSRVV 202
S L++H E + L G L L A+ L+ G H H ++
Sbjct: 16 SFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKIT 75
Query: 203 HMEPSLDVFVGSGLIDMYLKCG-----CNGIES----SIQIGKALVTMYAEGGSTQKADL 253
+ + + + LI MY+KCG C + ++ +V+ Y + G +A +
Sbjct: 76 GFKRP-NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARV 134
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFF-------------FFFVSLLSGC--SHS 298
F+ M R+++SW ++ ++Q G L + +F F F LL+ C S
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQ 194
Query: 299 GPVTKGKHYFTAMAKFTYTCYFVC-MVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357
+ + H +A F C ++D G + AK+ DEM K IW L+
Sbjct: 195 LQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIH-IWTTLIS 253
Query: 358 ACCSHYNTKLAE 369
+ + AE
Sbjct: 254 GYAKLGDMEAAE 265
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 170/406 (41%), Gaps = 82/406 (20%)
Query: 4 CGSLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIGPRYLFTYNTMINGGVR-- 61
CGSL++ AR++ ++ ++S + +ID V + + + M++ GV+
Sbjct: 284 CGSLET---ARQLFDGMLERNVVS--WNSMID--AYVQNENPKEAMLIFQKMLDEGVKPT 336
Query: 62 ----------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111
C +G+++ +H L + + S+ S I M+ KC VD A S
Sbjct: 337 DVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAAS--- 393
Query: 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171
MF K+ R LVSWN MI ++G + L F ++ +
Sbjct: 394 -------------------MFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTV 434
Query: 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231
+ Y + +A A + +H V+ +VFV + L+DMY KC
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKC-------- 486
Query: 232 IQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----- 286
G+ A L F++MS R++ +W +I + G + F
Sbjct: 487 --------------GAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQK 532
Query: 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTC-----YFVCMVDLLGLSGLL 333
F+S++S CSHSG V G F M K Y+ ++ MVDLLG +G L
Sbjct: 533 GTIKPNGVTFLSVISACSHSGLVEAGLKCFYMM-KENYSIELSMDHYGAMVDLLGRAGRL 591
Query: 334 GEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379
EA I +MP KP ++GA+LGAC H N AE L +L+
Sbjct: 592 NEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELN 637
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/433 (20%), Positives = 173/433 (39%), Gaps = 99/433 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFL-----------QLIDDDYRVFCDIGPRYL 49
+K CG L + ++IH L+ + +F + +++ +VF + R L
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDL 201
Query: 50 FTYNTMING------------GVRCLCVGNIKMAL--------------------HLHGL 77
++NT++ G V+ +C N+K + +HG
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGY 261
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
+ F S +I+ + +DM+ KCG+++ A +F M E
Sbjct: 262 AMRSGFDSLVNISTALVDMYAKCGSLETARQ----------------------LFDGMLE 299
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
R++VSWN+MI ++ E + F ++ + G + + A A A + DLE G +
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI 359
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI-GK----------ALVTMYAEGG 246
H V + +V V + LI MY C C ++++ + GK A++ +A+ G
Sbjct: 360 HKLSVELGLDRNVSVVNSLISMY--CKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNG 417
Query: 247 STQKADLAFELMSRR----NMISWMVLISAFSQAGVLEKPRFF-------------FFFV 289
A F M R + +++ +I+A ++ + ++ F
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTT 477
Query: 290 SLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS---K 346
+L+ + G + + F M++ T + M+D G G A +L +EM K
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWN-AMIDGYGTHGFGKAALELFEEMQKGTIK 536
Query: 347 PTCVIWGALLGAC 359
P V + +++ AC
Sbjct: 537 PNGVTFLSVISAC 549
Score = 38.5 bits (88), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFF 285
NG+ LV+++ GS +A FE + + + + ++ F++ L+K F
Sbjct: 63 NGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQF 122
Query: 286 FF-------------FVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGL 332
F F LL C + GK + K ++ +DL ++GL
Sbjct: 123 FVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFS------LDLFAMTGL 176
Query: 333 ---------LGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
+ EA+K+ D MP + V W ++ + ++A +++++ + ++K
Sbjct: 177 ENMYAKCRQVNEARKVFDRMPER-DLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK 233
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 161/350 (46%), Gaps = 66/350 (18%)
Query: 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109
FT ++++NG C G + LHGLV K F D ++ + ID++ KC +D A
Sbjct: 349 FTLSSILNGCAIGKCSG---LGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTA--- 402
Query: 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169
+ +F ++ ++ VSWNT+I G G + F E +
Sbjct: 403 -------------------VKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRN 443
Query: 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIE 229
++ + +++A A AS+ ++ G +H + + V V + LIDMY KCG
Sbjct: 444 QVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCG----- 498
Query: 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG-------VLE-- 280
I+ +++ F M ++ SW LIS +S G +L+
Sbjct: 499 -DIKFAQSV----------------FNEMETIDVASWNALISGYSTHGLGRQALRILDIM 541
Query: 281 -----KPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF--TYTC--YFVCMVDLLGLSG 331
KP F+ +LSGCS++G + +G+ F +M + C ++ CMV LLG SG
Sbjct: 542 KDRDCKPN-GLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSG 600
Query: 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381
L +A KLI+ +P +P+ +IW A+L A + N + A +L+++ K
Sbjct: 601 QLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPK 650
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 40/170 (23%)
Query: 131 MFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN-----HGFGLSSMLYATAFSAR 185
+F +MP+ D+V W+ MI+ ++GF E + FI + + F LSS+L A
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKC 363
Query: 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245
+ + G LH VV + LD++V + LID+Y KC
Sbjct: 364 SGL-----GEQLHGLVVKVGFDLDIYVSNALIDVYAKC---------------------- 396
Query: 246 GSTQKADLAFEL---MSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292
+K D A +L +S +N +SW +I + G E + F F L
Sbjct: 397 ---EKMDTAVKLFAELSSKNEVSWNTVIVGYENLG--EGGKAFSMFREAL 441
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 99/256 (38%), Gaps = 55/256 (21%)
Query: 129 LIMFQKMPERDLVSWNTMISILTRHGFGFET-LCTFIELWNHGFGLSSMLYATAFSARAS 187
L +F +MPER+ VS+ T+ G+ + + + L G L+ ++ + S
Sbjct: 104 LNLFDEMPERNNVSFVTLA-----QGYACQDPIGLYSRLHREGHELNPHVFTSFLKLFVS 158
Query: 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247
+ E P LHS +V + G +S+ +G AL+ Y+ GS
Sbjct: 159 LDKAEICPWLHSPIVKL----------------------GYDSNAFVGAALINAYSVCGS 196
Query: 248 TQKADLAFELMSRRNMISWMVLISAFSQAGVLEK--------------PRFFFFFVSLLS 293
A FE + ++++ W ++S + + G E P + F +L +
Sbjct: 197 VDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKA 256
Query: 294 GCSHSG-PVTKGKHYFTAMAKFTYTCYF------VCMVDLLGLSGLLGEAKKLIDEMPSK 346
KG H + TCY V ++ L G + +A K+ +EMP K
Sbjct: 257 SIGLGAFDFAKGVH-----GQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMP-K 310
Query: 347 PTCVIWGALLGACCSH 362
V W ++ C +
Sbjct: 311 NDVVPWSFMIARFCQN 326
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 61/299 (20%)
Query: 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133
LH + K + S+ + + I+ + CG+VD A + F + C
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVF-----EGILC------------- 209
Query: 134 KMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193
+D+V W ++S +G+ ++L + GF ++ + TA A + ++
Sbjct: 210 ----KDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDF 265
Query: 194 GPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253
+H +++ LD VG GL+ +Y + G A
Sbjct: 266 AKGVHGQILKTCYVLDPRVGVGLLQLYTQL----------------------GDMSDAFK 303
Query: 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFFF-----FV--------SLLSGCSHSGP 300
F M + +++ W +I+ F Q G + F FV S+L+GC+
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKC 363
Query: 301 VTKGK--HYFTAMAKFTYTCYFV-CMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALL 356
G+ H F Y ++D+ + A KL E+ SK V W ++
Sbjct: 364 SGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNE-VSWNTVI 421
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/453 (23%), Positives = 179/453 (39%), Gaps = 101/453 (22%)
Query: 1 MKACGSLKSLPIARKIHAQLI--STCLISSIFLQLIDDDY-----RVF-----CDIGPRY 48
M+A SLK + ARK+ ++ + +I+ + +++ + +VF C++ P +
Sbjct: 81 MRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDH 140
Query: 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAES 108
+T+ ++ C C G I + +HG K S + + M+ KCG + A
Sbjct: 141 -YTFPCVLKA---CSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196
Query: 109 AFLRMLNPSLFCWKF--------------------------------------------- 123
M + W
Sbjct: 197 VLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTT 256
Query: 124 -GIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182
++ + MF KM ++ LVSWN MI + ++ E + + + GF ++ +
Sbjct: 257 ENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVL 316
Query: 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242
A L G +H + + ++ + + LIDMY KCGC
Sbjct: 317 PACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGC----------------- 359
Query: 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------FFV 289
+KA FE M R+++SW +ISA+ +G F FV
Sbjct: 360 -----LEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFV 414
Query: 290 SLLSGCSHSGPVTKGKHYFTAMA---KFTYTC-YFVCMVDLLGLSGLLGEAKKLIDEMPS 345
+ L+ CSH+G + +G+ F M K T + CMVDLLG +G + EA + I +M
Sbjct: 415 TTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSM 474
Query: 346 KPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378
+P +WGALLGAC H +T + L L QL
Sbjct: 475 EPNERVWGALLGACRVHSDTDIGLLAADKLFQL 507
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVL-EKPRFF------- 285
+G L+ YA A F+ + RN+I V+I ++ G E + F
Sbjct: 76 LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135
Query: 286 -----FFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVC---MVDLLGLSGLLGEAK 337
+ F +L CS SG + G+ + K + +V + G G L EA+
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195
Query: 338 KLIDEMPSKPTCVIWGALL 356
++DEM S+ V W +L+
Sbjct: 196 LVLDEM-SRRDVVSWNSLV 213
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 116/427 (27%), Positives = 181/427 (42%), Gaps = 71/427 (16%)
Query: 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYL 49
+KAC SL + ++ H Q S IF+ ++D +VF +I R +
Sbjct: 83 IKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNI 142
Query: 50 FTYNTMING----GVRCLCVGNIK------------MALHLHGLVKKFYFVSDESIAKSS 93
++ +MI G G V K M L GLV S +
Sbjct: 143 VSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLT 202
Query: 94 IDMH---VKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150
+H +K G D S +L+ + G+ +F ++ ++D VS+N+++S+
Sbjct: 203 ESIHSFVIKRG-FDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261
Query: 151 TRHGFGFETLCTFIEL-WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209
+ G E F L N +++ +T A + L G +H +V+ M D
Sbjct: 262 AQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDD 321
Query: 210 VFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVL 269
V VG+ +IDMY C C +E+ A AF+ M +N+ SW +
Sbjct: 322 VIVGTSIIDMY--CKCGRVET--------------------ARKAFDRMKNKNVRSWTAM 359
Query: 270 ISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAM-AKFT 315
I+ + G K F FVS+L+ CSH+G +G +F AM +F
Sbjct: 360 IAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFG 419
Query: 316 YTC---YFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372
++ CMVDLLG +G L +A LI M KP +IW +LL AC H N +LAE+ +
Sbjct: 420 VEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISV 479
Query: 373 RNLLQLD 379
L +LD
Sbjct: 480 ARLFELD 486
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 23/151 (15%)
Query: 128 LLIMFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186
L +F + ++ D+ SWN++I+ L R G E L F + + + A A +
Sbjct: 28 LTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACS 87
Query: 187 SVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246
S++D+ G H + D+FV S LI MY C G
Sbjct: 88 SLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTC----------------------G 125
Query: 247 STQKADLAFELMSRRNMISWMVLISAFSQAG 277
+ A F+ + +RN++SW +I + G
Sbjct: 126 KLEDARKVFDEIPKRNIVSWTSMIRGYDLNG 156
>sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2
SV=1
Length = 701
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 106/446 (23%), Positives = 179/446 (40%), Gaps = 106/446 (23%)
Query: 1 MKACGSLKSLPIARKIHAQLISTC------LISSIFLQ-----LIDDDYRVFCDIGPRYL 49
++AC LKS+ ++++ ++S +++ I L +I D R+F +I R L
Sbjct: 130 VEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNL 189
Query: 50 FTYNTMINGGVR--------------------------------CLCVGNIKMALHLHGL 77
++Y ++I+G V +G+I + LH
Sbjct: 190 YSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVGKQLHVC 249
Query: 78 VKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE 137
K V + ++ IDM+ KCG ++ A AF + MPE
Sbjct: 250 ALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAF----------------------ECMPE 287
Query: 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHL 197
+ V+WN +I+ HG+ E LC ++ + G + + + LE
Sbjct: 288 KTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQA 347
Query: 198 HSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257
H+ ++ NG ES I ALV Y++ G A F+
Sbjct: 348 HASLIR----------------------NGFESEIVANTALVDFYSKWGRVDTARYVFDK 385
Query: 258 MSRRNMISWMVLISAFSQAG-------VLEK-------PRFFFFFVSLLSGCSHSGPVTK 303
+ R+N+ISW L+ ++ G + EK P F +++LS C++SG +
Sbjct: 386 LPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTF-LAVLSACAYSGLSEQ 444
Query: 304 GKHYFTAMAKF----TYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGAC 359
G F +M++ ++ CM++LLG GLL EA I P K T +W ALL AC
Sbjct: 445 GWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNAC 504
Query: 360 CSHYNTKLAELVMRNLLQLDVKVFGS 385
N +L +V L + + G+
Sbjct: 505 RMQENLELGRVVAEKLYGMGPEKLGN 530
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 122/328 (37%), Gaps = 64/328 (19%)
Query: 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110
TY+ ++ C+ + +I+ ++G + F ++ + + MHVKCG
Sbjct: 125 TYDALVEA---CIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGM-------- 173
Query: 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170
II +F ++PER+L S+ ++IS G E F +W
Sbjct: 174 --------------IIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEEL 219
Query: 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230
+ +A A A + + G LH + + + FV GLIDMY KC
Sbjct: 220 SDCETHTFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKC------- 272
Query: 231 SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP-------- 282
G + A AFE M + ++W +I+ ++ G E+
Sbjct: 273 ---------------GDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDMR 317
Query: 283 -------RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKF-TYTCYFVCMVDLLGLSGLLG 334
+F + +S +TK H F + +VD G +
Sbjct: 318 DSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVD 377
Query: 335 EAKKLIDEMPSKPTCVIWGALLGACCSH 362
A+ + D++P K + W AL+G +H
Sbjct: 378 TARYVFDKLPRK-NIISWNALMGGYANH 404
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,635,999
Number of Sequences: 539616
Number of extensions: 5391650
Number of successful extensions: 15348
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 12417
Number of HSP's gapped (non-prelim): 1095
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)