Query 040338
Match_columns 385
No_of_seqs 341 out of 1874
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 07:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.5E-58 1.2E-62 446.8 35.9 360 3-383 379-788 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 6.2E-57 1.3E-61 445.3 35.5 378 3-384 196-692 (857)
3 PLN03081 pentatricopeptide (PP 100.0 6.2E-57 1.3E-61 435.5 33.8 378 1-381 130-560 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.2E-56 2.5E-61 443.3 35.7 377 2-383 94-588 (857)
5 PLN03218 maturation of RBCL 1; 100.0 2.4E-54 5.3E-59 421.3 34.7 379 1-384 444-915 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 5.3E-53 1.2E-57 408.2 34.0 371 2-383 95-528 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2E-22 4.3E-27 202.6 34.9 371 4-381 441-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 3.1E-22 6.8E-27 201.1 35.8 365 5-376 476-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 9.9E-20 2.1E-24 165.6 29.0 281 65-383 48-352 (389)
10 PRK11788 tetratricopeptide rep 99.8 6.4E-18 1.4E-22 153.7 24.9 268 33-345 50-346 (389)
11 PRK15174 Vi polysaccharide exp 99.8 1.2E-16 2.6E-21 153.0 32.0 303 33-382 57-385 (656)
12 KOG4626 O-linked N-acetylgluco 99.8 9E-17 1.9E-21 142.5 24.1 306 49-383 116-490 (966)
13 PRK11447 cellulose synthase su 99.8 1.4E-15 3.1E-20 155.2 34.6 369 4-377 279-739 (1157)
14 KOG4422 Uncharacterized conser 99.8 3.6E-15 7.7E-20 127.0 28.6 350 5-380 126-592 (625)
15 TIGR00990 3a0801s09 mitochondr 99.7 3.5E-15 7.5E-20 143.2 29.9 342 33-380 142-573 (615)
16 KOG4422 Uncharacterized conser 99.7 7.9E-15 1.7E-19 124.9 25.4 303 49-380 116-464 (625)
17 PRK15174 Vi polysaccharide exp 99.7 1.6E-14 3.4E-19 138.6 29.9 296 4-346 52-381 (656)
18 PRK11447 cellulose synthase su 99.7 3.3E-14 7.2E-19 145.3 33.0 335 4-345 313-739 (1157)
19 KOG4626 O-linked N-acetylgluco 99.7 2.1E-15 4.5E-20 134.0 20.7 330 6-365 128-506 (966)
20 PRK10049 pgaA outer membrane p 99.7 6.2E-14 1.3E-18 137.2 31.8 353 4-384 25-462 (765)
21 TIGR00990 3a0801s09 mitochondr 99.7 2E-13 4.4E-18 131.1 30.2 297 65-382 140-541 (615)
22 PRK14574 hmsH outer membrane p 99.7 1.4E-12 3E-17 126.0 35.5 354 5-381 45-482 (822)
23 PRK10049 pgaA outer membrane p 99.6 8.8E-13 1.9E-17 129.2 30.2 322 33-383 30-427 (765)
24 PRK14574 hmsH outer membrane p 99.6 3E-12 6.4E-17 123.8 31.7 325 33-383 49-450 (822)
25 PRK09782 bacteriophage N4 rece 99.6 8.1E-12 1.7E-16 123.3 33.0 159 4-168 88-275 (987)
26 PRK10747 putative protoheme IX 99.5 1.7E-11 3.6E-16 111.1 29.0 289 51-379 84-391 (398)
27 PF13041 PPR_2: PPR repeat fam 99.5 4.6E-14 1E-18 86.9 6.2 50 138-187 1-50 (50)
28 PRK09782 bacteriophage N4 rece 99.5 1.1E-11 2.4E-16 122.3 25.9 291 65-382 389-710 (987)
29 TIGR00540 hemY_coli hemY prote 99.5 2.4E-10 5.2E-15 104.2 31.1 290 50-377 83-398 (409)
30 KOG4318 Bicoid mRNA stability 99.5 2.5E-11 5.5E-16 112.5 22.2 84 138-224 202-285 (1088)
31 PRK10747 putative protoheme IX 99.4 6.8E-11 1.5E-15 107.1 24.6 267 33-344 99-388 (398)
32 PF13429 TPR_15: Tetratricopep 99.4 2E-13 4.2E-18 118.2 7.5 248 65-377 21-276 (280)
33 PF13041 PPR_2: PPR repeat fam 99.4 4E-13 8.6E-18 82.7 5.9 50 47-99 1-50 (50)
34 KOG2002 TPR-containing nuclear 99.4 1.1E-10 2.4E-15 109.4 24.3 365 8-384 284-751 (1018)
35 COG3071 HemY Uncharacterized e 99.4 2.2E-09 4.9E-14 91.5 29.3 294 53-383 86-395 (400)
36 PF13429 TPR_15: Tetratricopep 99.4 4.4E-13 9.5E-18 116.0 7.3 227 92-383 13-248 (280)
37 COG2956 Predicted N-acetylgluc 99.4 9.4E-10 2E-14 91.2 24.5 287 49-380 36-349 (389)
38 KOG1126 DNA-binding cell divis 99.4 6.1E-11 1.3E-15 107.0 17.4 274 65-383 332-625 (638)
39 KOG2002 TPR-containing nuclear 99.3 1.6E-09 3.5E-14 101.8 26.4 81 299-379 626-710 (1018)
40 KOG2076 RNA polymerase III tra 99.3 2.9E-09 6.3E-14 99.4 26.8 339 33-377 154-554 (895)
41 TIGR00540 hemY_coli hemY prote 99.3 1.8E-09 3.8E-14 98.5 24.1 271 33-343 99-396 (409)
42 KOG1915 Cell cycle control pro 99.3 1.5E-08 3.3E-13 88.3 27.6 345 7-376 120-583 (677)
43 COG2956 Predicted N-acetylgluc 99.3 1.7E-08 3.7E-13 83.9 25.5 279 25-345 35-346 (389)
44 KOG1155 Anaphase-promoting com 99.2 9.4E-09 2E-13 89.3 22.7 294 84-377 161-494 (559)
45 KOG1174 Anaphase-promoting com 99.2 3.8E-08 8.2E-13 84.5 25.6 286 54-383 199-505 (564)
46 KOG2076 RNA polymerase III tra 99.2 2.5E-08 5.5E-13 93.3 26.4 289 65-377 152-511 (895)
47 KOG2003 TPR repeat-containing 99.2 3E-09 6.5E-14 92.1 18.9 48 65-114 289-336 (840)
48 KOG1126 DNA-binding cell divis 99.2 2.8E-10 6.1E-15 102.8 13.2 230 154-384 333-592 (638)
49 KOG1840 Kinesin light chain [C 99.2 5.4E-09 1.2E-13 95.1 21.3 218 141-376 200-477 (508)
50 KOG1155 Anaphase-promoting com 99.2 5E-09 1.1E-13 91.0 20.0 124 138-285 362-488 (559)
51 KOG1915 Cell cycle control pro 99.2 2.3E-07 4.9E-12 81.2 28.7 347 7-380 86-538 (677)
52 KOG2003 TPR repeat-containing 99.1 5.9E-08 1.3E-12 84.3 24.1 244 95-364 427-709 (840)
53 COG3071 HemY Uncharacterized e 99.1 1.7E-07 3.7E-12 80.2 26.4 265 33-344 99-388 (400)
54 TIGR02521 type_IV_pilW type IV 99.1 6.1E-09 1.3E-13 87.3 17.3 199 140-379 31-233 (234)
55 TIGR02521 type_IV_pilW type IV 99.1 1.9E-08 4.1E-13 84.3 19.7 189 49-283 31-223 (234)
56 PRK12370 invasion protein regu 99.1 3.2E-08 7E-13 93.8 22.6 115 68-204 320-435 (553)
57 KOG4318 Bicoid mRNA stability 99.1 2.6E-09 5.7E-14 99.5 14.5 248 73-364 11-286 (1088)
58 KOG1840 Kinesin light chain [C 99.1 6.1E-08 1.3E-12 88.3 22.3 246 52-344 202-477 (508)
59 KOG2376 Signal recognition par 99.1 5E-07 1.1E-11 81.1 27.2 195 3-206 21-255 (652)
60 PRK12370 invasion protein regu 99.1 1.7E-08 3.7E-13 95.6 19.1 245 86-379 255-536 (553)
61 KOG0495 HAT repeat protein [RN 99.0 2.7E-06 5.9E-11 77.5 30.9 297 65-381 419-751 (913)
62 KOG0495 HAT repeat protein [RN 99.0 2E-06 4.3E-11 78.4 30.0 291 65-381 563-883 (913)
63 KOG1129 TPR repeat-containing 99.0 8.3E-09 1.8E-13 85.8 13.9 210 91-345 227-457 (478)
64 KOG0547 Translocase of outer m 98.9 2.9E-07 6.4E-12 80.8 20.2 192 185-377 336-565 (606)
65 PF12854 PPR_1: PPR repeat 98.9 1.2E-09 2.7E-14 60.3 3.8 34 81-114 1-34 (34)
66 PF12569 NARP1: NMDA receptor- 98.9 1.6E-06 3.4E-11 80.1 25.1 272 65-377 17-333 (517)
67 KOG2047 mRNA splicing factor [ 98.9 6.7E-06 1.4E-10 74.9 26.9 340 33-382 117-582 (835)
68 PRK11189 lipoprotein NlpI; Pro 98.8 1.1E-06 2.4E-11 76.4 21.1 228 65-354 39-275 (296)
69 PF12569 NARP1: NMDA receptor- 98.8 3.4E-06 7.3E-11 78.0 25.1 227 33-286 19-285 (517)
70 KOG1173 Anaphase-promoting com 98.8 5.6E-06 1.2E-10 74.3 24.6 254 86-382 243-522 (611)
71 KOG1129 TPR repeat-containing 98.8 8.9E-08 1.9E-12 79.8 11.9 214 144-382 227-462 (478)
72 KOG2376 Signal recognition par 98.8 9.9E-06 2.1E-10 73.1 24.9 115 54-169 14-139 (652)
73 KOG0547 Translocase of outer m 98.8 6.4E-07 1.4E-11 78.7 16.0 138 244-381 338-494 (606)
74 PRK11189 lipoprotein NlpI; Pro 98.8 2.4E-06 5.1E-11 74.4 19.9 194 141-382 65-269 (296)
75 PF12854 PPR_1: PPR repeat 98.7 2.1E-08 4.6E-13 55.4 3.3 31 137-167 4-34 (34)
76 KOG3616 Selective LIM binding 98.7 3.3E-06 7.1E-11 78.0 19.0 129 239-373 739-874 (1636)
77 KOG2047 mRNA splicing factor [ 98.7 9.3E-05 2E-09 67.7 27.3 95 287-381 389-509 (835)
78 cd05804 StaR_like StaR_like; a 98.7 3.2E-05 6.9E-10 69.5 24.9 256 65-379 56-337 (355)
79 KOG1156 N-terminal acetyltrans 98.6 3.6E-05 7.9E-10 70.3 24.1 182 65-268 54-257 (700)
80 COG3063 PilF Tfp pilus assembl 98.6 5.4E-06 1.2E-10 66.1 16.3 181 178-381 38-239 (250)
81 PF04733 Coatomer_E: Coatomer 98.6 1E-06 2.2E-11 75.8 13.2 132 232-381 131-268 (290)
82 KOG4340 Uncharacterized conser 98.6 1.4E-05 3E-10 66.3 18.8 300 33-341 25-370 (459)
83 KOG1173 Anaphase-promoting com 98.6 1.5E-05 3.2E-10 71.7 20.2 183 141-361 347-534 (611)
84 KOG3785 Uncharacterized conser 98.6 4E-05 8.8E-10 65.1 21.2 94 290-383 398-495 (557)
85 KOG0985 Vesicle coat protein c 98.5 0.00041 8.8E-09 66.9 28.5 113 262-374 1103-1245(1666)
86 KOG4162 Predicted calmodulin-b 98.5 0.00014 3.1E-09 67.8 25.1 236 148-383 486-788 (799)
87 KOG3616 Selective LIM binding 98.5 1.6E-05 3.6E-10 73.6 18.9 183 182-372 739-931 (1636)
88 TIGR00756 PPR pentatricopeptid 98.5 2.4E-07 5.2E-12 51.9 4.3 35 141-175 1-35 (35)
89 KOG0985 Vesicle coat protein c 98.5 0.00021 4.6E-09 68.8 25.1 229 96-344 1057-1306(1666)
90 KOG4162 Predicted calmodulin-b 98.5 0.00062 1.4E-08 63.8 27.6 302 82-383 318-754 (799)
91 KOG3617 WD40 and TPR repeat-co 98.5 5E-05 1.1E-09 71.3 20.4 303 33-374 743-1105(1416)
92 PF13812 PPR_3: Pentatricopept 98.4 3.8E-07 8.1E-12 50.7 4.2 33 141-173 2-34 (34)
93 PF04733 Coatomer_E: Coatomer 98.4 1E-06 2.2E-11 75.8 8.5 208 148-382 9-234 (290)
94 COG3063 PilF Tfp pilus assembl 98.4 0.00012 2.6E-09 58.7 19.0 164 52-261 38-202 (250)
95 KOG0624 dsRNA-activated protei 98.4 0.00026 5.6E-09 60.1 22.0 309 33-382 53-374 (504)
96 cd05804 StaR_like StaR_like; a 98.4 0.00019 4E-09 64.6 22.5 150 33-204 58-215 (355)
97 TIGR03302 OM_YfiO outer membra 98.4 1.3E-05 2.8E-10 67.5 14.0 150 231-380 32-234 (235)
98 KOG1128 Uncharacterized conser 98.3 2.1E-05 4.5E-10 72.9 14.3 203 85-345 396-615 (777)
99 KOG3617 WD40 and TPR repeat-co 98.3 0.00014 3.1E-09 68.4 19.6 306 33-367 815-1189(1416)
100 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.3E-11 48.6 4.4 35 50-87 1-35 (35)
101 TIGR03302 OM_YfiO outer membra 98.3 5.3E-05 1.1E-09 63.7 15.2 188 138-346 31-232 (235)
102 PRK04841 transcriptional regul 98.3 0.00084 1.8E-08 68.4 26.6 282 65-379 422-761 (903)
103 KOG3785 Uncharacterized conser 98.3 0.00013 2.7E-09 62.2 16.8 293 33-352 166-497 (557)
104 KOG1070 rRNA processing protei 98.3 0.00024 5.2E-09 70.6 20.8 225 84-370 1455-1692(1710)
105 KOG1125 TPR repeat-containing 98.2 0.00011 2.4E-09 66.4 17.0 231 97-370 295-563 (579)
106 KOG0548 Molecular co-chaperone 98.2 0.00026 5.7E-09 63.5 18.7 147 235-381 227-424 (539)
107 PRK15359 type III secretion sy 98.2 5.4E-05 1.2E-09 58.1 12.9 84 65-168 37-120 (144)
108 PF06239 ECSIT: Evolutionarily 98.2 2.6E-05 5.6E-10 62.1 10.5 120 35-191 31-154 (228)
109 KOG1156 N-terminal acetyltrans 98.2 0.0038 8.3E-08 57.6 25.5 202 7-216 20-258 (700)
110 PF01535 PPR: PPR repeat; Int 98.2 2.4E-06 5.2E-11 46.2 3.4 31 141-171 1-31 (31)
111 PF13812 PPR_3: Pentatricopept 98.2 4.6E-06 1E-10 46.2 4.4 33 50-85 2-34 (34)
112 KOG1174 Anaphase-promoting com 98.1 0.00024 5.1E-09 61.8 15.9 148 33-202 247-395 (564)
113 PRK10370 formate-dependent nit 98.1 0.00016 3.5E-09 58.7 14.5 114 33-169 54-173 (198)
114 PRK04841 transcriptional regul 98.1 0.0051 1.1E-07 62.7 28.5 214 148-378 460-720 (903)
115 KOG1070 rRNA processing protei 98.1 0.00049 1.1E-08 68.5 19.3 187 177-382 1460-1667(1710)
116 PLN02789 farnesyltranstransfer 98.1 0.0027 5.8E-08 55.6 22.3 221 65-344 50-300 (320)
117 PLN02789 farnesyltranstransfer 98.1 0.0028 6.1E-08 55.5 22.0 225 97-379 47-303 (320)
118 PRK14720 transcript cleavage f 98.1 0.00053 1.2E-08 67.1 19.0 213 137-360 28-268 (906)
119 COG4783 Putative Zn-dependent 98.1 0.0025 5.4E-08 57.0 21.2 195 33-260 252-453 (484)
120 PRK14720 transcript cleavage f 98.0 0.00061 1.3E-08 66.7 19.0 234 47-328 29-268 (906)
121 PRK15359 type III secretion sy 98.0 8.1E-05 1.8E-09 57.1 10.8 109 73-205 14-122 (144)
122 PF09976 TPR_21: Tetratricopep 98.0 0.00031 6.6E-09 54.1 13.5 124 234-375 14-144 (145)
123 TIGR02552 LcrH_SycD type III s 98.0 0.00021 4.5E-09 54.2 12.5 92 65-178 30-121 (135)
124 PF01535 PPR: PPR repeat; Int 98.0 8.5E-06 1.8E-10 44.0 3.5 31 350-380 1-31 (31)
125 PRK10370 formate-dependent nit 98.0 0.0002 4.4E-09 58.2 12.8 121 65-207 52-176 (198)
126 PF08579 RPM2: Mitochondrial r 98.0 6.2E-05 1.3E-09 53.1 8.3 80 143-222 28-116 (120)
127 KOG0548 Molecular co-chaperone 98.0 0.004 8.8E-08 56.2 21.6 352 5-382 13-459 (539)
128 KOG3081 Vesicle coat complex C 98.0 0.00068 1.5E-08 55.7 15.4 114 270-383 115-241 (299)
129 COG5010 TadD Flp pilus assembl 98.0 0.00085 1.8E-08 55.0 16.0 152 65-261 79-231 (257)
130 PRK15179 Vi polysaccharide bio 98.0 0.001 2.3E-08 64.2 19.3 132 48-204 85-217 (694)
131 COG4783 Putative Zn-dependent 98.0 0.002 4.4E-08 57.5 19.1 149 228-376 270-435 (484)
132 KOG0624 dsRNA-activated protei 98.0 0.0054 1.2E-07 52.4 20.6 259 90-382 41-340 (504)
133 KOG1128 Uncharacterized conser 97.9 0.00033 7.2E-09 65.2 14.5 151 233-383 425-587 (777)
134 PF10037 MRP-S27: Mitochondria 97.9 9.7E-05 2.1E-09 66.2 10.9 126 82-223 61-186 (429)
135 KOG4340 Uncharacterized conser 97.9 0.00076 1.6E-08 56.3 15.1 93 90-203 13-106 (459)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0007 1.5E-08 60.6 15.8 125 89-259 171-295 (395)
137 TIGR02795 tol_pal_ybgF tol-pal 97.9 9.7E-05 2.1E-09 54.6 8.8 96 288-383 5-110 (119)
138 KOG2053 Mitochondrial inherita 97.9 0.025 5.5E-07 54.4 29.9 112 6-122 21-149 (932)
139 TIGR02552 LcrH_SycD type III s 97.9 0.00011 2.4E-09 55.8 9.0 94 290-383 22-119 (135)
140 PRK15179 Vi polysaccharide bio 97.8 0.0023 4.9E-08 61.9 18.1 134 83-260 82-216 (694)
141 KOG1125 TPR repeat-containing 97.8 0.0007 1.5E-08 61.4 13.1 196 185-381 295-530 (579)
142 COG5010 TadD Flp pilus assembl 97.8 0.0025 5.5E-08 52.3 15.1 153 91-286 70-225 (257)
143 cd00189 TPR Tetratricopeptide 97.8 0.0002 4.3E-09 50.0 8.1 93 288-380 3-99 (100)
144 PF10037 MRP-S27: Mitochondria 97.8 0.00037 8E-09 62.6 11.3 120 48-188 65-186 (429)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00061 1.3E-08 60.9 12.3 118 234-373 171-292 (395)
146 PF14938 SNAP: Soluble NSF att 97.7 0.00073 1.6E-08 58.4 12.2 205 143-378 38-266 (282)
147 PF08579 RPM2: Mitochondrial r 97.7 0.00031 6.8E-09 49.7 7.6 81 90-187 28-116 (120)
148 KOG1127 TPR repeat-containing 97.7 0.011 2.5E-07 57.4 20.2 147 50-203 493-658 (1238)
149 KOG3060 Uncharacterized conser 97.6 0.023 5.1E-07 46.6 18.7 186 33-263 27-222 (289)
150 KOG1914 mRNA cleavage and poly 97.6 0.046 9.9E-07 49.8 21.7 113 232-345 366-500 (656)
151 PF09976 TPR_21: Tetratricopep 97.6 0.0026 5.6E-08 48.9 12.3 123 142-285 14-140 (145)
152 cd00189 TPR Tetratricopeptide 97.6 0.00052 1.1E-08 47.7 7.8 97 89-205 2-98 (100)
153 KOG1127 TPR repeat-containing 97.5 0.02 4.3E-07 55.8 19.7 170 66-259 472-657 (1238)
154 PF12895 Apc3: Anaphase-promot 97.5 0.00018 3.9E-09 49.5 4.9 81 65-165 2-83 (84)
155 KOG3081 Vesicle coat complex C 97.5 0.015 3.2E-07 48.1 16.1 50 154-204 187-236 (299)
156 PF06239 ECSIT: Evolutionarily 97.5 0.00075 1.6E-08 54.0 8.4 88 137-224 44-152 (228)
157 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0016 3.5E-08 47.9 9.8 103 88-206 3-107 (119)
158 PF13432 TPR_16: Tetratricopep 97.4 0.00025 5.5E-09 45.9 4.3 60 323-382 3-64 (65)
159 KOG2041 WD40 repeat protein [G 97.4 0.0083 1.8E-07 56.0 15.0 244 33-345 678-951 (1189)
160 PF14938 SNAP: Soluble NSF att 97.4 0.0031 6.8E-08 54.5 12.1 114 266-381 97-228 (282)
161 KOG1914 mRNA cleavage and poly 97.4 0.032 7E-07 50.8 18.2 175 68-283 347-530 (656)
162 PF05843 Suf: Suppressor of fo 97.4 0.0026 5.7E-08 54.8 11.3 131 233-381 2-139 (280)
163 PF04840 Vps16_C: Vps16, C-ter 97.4 0.083 1.8E-06 46.3 20.6 98 265-372 179-285 (319)
164 PLN03088 SGT1, suppressor of 97.4 0.0012 2.6E-08 59.0 9.1 91 293-383 10-104 (356)
165 PF12895 Apc3: Anaphase-promot 97.3 0.00065 1.4E-08 46.7 5.9 77 298-374 2-83 (84)
166 KOG3060 Uncharacterized conser 97.3 0.019 4.1E-07 47.1 14.7 173 7-207 25-223 (289)
167 KOG2053 Mitochondrial inherita 97.3 0.063 1.4E-06 51.9 19.8 102 99-224 21-124 (932)
168 PLN03088 SGT1, suppressor of 97.3 0.0049 1.1E-07 55.2 12.3 98 65-184 15-112 (356)
169 PRK02603 photosystem I assembl 97.2 0.0082 1.8E-07 47.7 11.7 125 139-279 34-167 (172)
170 PF14559 TPR_19: Tetratricopep 97.2 0.0009 2E-08 43.7 4.8 59 297-355 3-64 (68)
171 PRK10803 tol-pal system protei 97.1 0.0035 7.5E-08 53.2 9.2 97 287-383 145-251 (263)
172 PRK10866 outer membrane biogen 97.1 0.051 1.1E-06 45.8 15.5 185 145-344 37-239 (243)
173 CHL00033 ycf3 photosystem I as 97.1 0.02 4.4E-07 45.2 12.6 124 140-279 35-167 (168)
174 PF03704 BTAD: Bacterial trans 97.1 0.0058 1.3E-07 47.0 9.2 109 50-177 4-138 (146)
175 PRK02603 photosystem I assembl 97.0 0.0059 1.3E-07 48.5 9.1 96 287-382 37-153 (172)
176 PF13281 DUF4071: Domain of un 97.0 0.22 4.8E-06 44.2 19.7 211 69-316 120-336 (374)
177 KOG0553 TPR repeat-containing 97.0 0.0024 5.1E-08 53.6 6.7 88 296-383 92-183 (304)
178 PF13281 DUF4071: Domain of un 97.0 0.15 3.4E-06 45.2 18.1 187 46-263 135-336 (374)
179 CHL00033 ycf3 photosystem I as 97.0 0.016 3.5E-07 45.8 11.0 95 50-166 36-139 (168)
180 PRK10866 outer membrane biogen 96.9 0.17 3.7E-06 42.6 17.5 176 180-376 37-239 (243)
181 PRK15363 pathogenicity island 96.9 0.0067 1.5E-07 46.3 8.0 82 262-343 34-129 (157)
182 KOG1538 Uncharacterized conser 96.9 0.023 5.1E-07 52.7 12.6 211 143-381 601-849 (1081)
183 PRK15363 pathogenicity island 96.9 0.058 1.3E-06 41.3 12.8 85 65-169 48-132 (157)
184 PF12688 TPR_5: Tetratrico pep 96.9 0.033 7.2E-07 40.9 11.1 110 146-275 7-118 (120)
185 PRK10153 DNA-binding transcrip 96.9 0.023 5.1E-07 53.3 12.8 142 228-383 333-487 (517)
186 PF13432 TPR_16: Tetratricopep 96.8 0.0041 8.9E-08 40.1 5.6 56 94-168 4-59 (65)
187 PF05843 Suf: Suppressor of fo 96.8 0.0099 2.1E-07 51.3 9.2 131 33-183 16-148 (280)
188 KOG1130 Predicted G-alpha GTPa 96.8 0.0028 6.1E-08 55.4 5.5 236 142-377 17-343 (639)
189 PF13414 TPR_11: TPR repeat; P 96.8 0.0022 4.8E-08 42.0 3.9 63 318-380 4-69 (69)
190 PF14559 TPR_19: Tetratricopep 96.7 0.0062 1.3E-07 39.7 5.9 52 65-117 4-55 (68)
191 KOG3941 Intermediate in Toll s 96.7 0.012 2.6E-07 49.0 8.3 117 33-167 49-186 (406)
192 PRK10153 DNA-binding transcrip 96.6 0.091 2E-06 49.4 14.9 141 46-207 334-485 (517)
193 PF13371 TPR_9: Tetratricopept 96.6 0.0047 1E-07 40.9 4.8 59 325-383 3-63 (73)
194 PF12921 ATP13: Mitochondrial 96.5 0.04 8.6E-07 40.9 9.6 94 86-184 1-97 (126)
195 KOG1538 Uncharacterized conser 96.5 0.45 9.8E-06 44.7 17.9 95 251-345 735-845 (1081)
196 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.58 1.2E-05 42.1 22.2 86 287-373 399-490 (660)
197 PF12921 ATP13: Mitochondrial 96.5 0.055 1.2E-06 40.2 9.9 86 139-224 1-102 (126)
198 KOG0553 TPR repeat-containing 96.3 0.032 7E-07 47.0 8.9 96 65-182 94-189 (304)
199 PF13414 TPR_11: TPR repeat; P 96.3 0.0076 1.6E-07 39.4 4.4 64 86-168 2-66 (69)
200 PF12688 TPR_5: Tetratrico pep 96.3 0.043 9.3E-07 40.3 8.6 85 292-376 8-102 (120)
201 KOG2041 WD40 repeat protein [G 96.3 0.17 3.6E-06 47.8 13.9 67 137-205 689-764 (1189)
202 PF13525 YfiO: Outer membrane 96.3 0.45 9.7E-06 38.9 15.4 82 287-369 112-198 (203)
203 PF13424 TPR_12: Tetratricopep 96.2 0.0051 1.1E-07 41.4 3.2 60 318-377 6-74 (78)
204 PF04840 Vps16_C: Vps16, C-ter 96.2 0.78 1.7E-05 40.3 20.1 85 287-375 179-263 (319)
205 KOG3941 Intermediate in Toll s 96.2 0.046 1E-06 45.7 8.9 88 137-224 64-172 (406)
206 PF13424 TPR_12: Tetratricopep 96.1 0.019 4.2E-07 38.5 5.7 57 287-343 7-72 (78)
207 COG4700 Uncharacterized protei 96.1 0.4 8.7E-06 37.7 12.9 109 262-370 88-214 (251)
208 COG5107 RNA14 Pre-mRNA 3'-end 96.0 0.42 9E-06 42.9 14.4 133 87-260 397-530 (660)
209 PF13371 TPR_9: Tetratricopept 96.0 0.035 7.6E-07 36.6 6.4 56 95-169 3-58 (73)
210 PF13525 YfiO: Outer membrane 96.0 0.08 1.7E-06 43.3 9.7 177 146-338 11-199 (203)
211 PF03704 BTAD: Bacterial trans 96.0 0.025 5.5E-07 43.4 6.3 71 142-213 64-139 (146)
212 PF13170 DUF4003: Protein of u 95.9 0.18 3.8E-06 43.8 11.8 131 66-213 76-220 (297)
213 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.1 2.2E-06 47.1 10.1 114 138-261 73-195 (453)
214 PRK10803 tol-pal system protei 95.8 0.17 3.7E-06 43.0 11.1 100 51-169 145-246 (263)
215 KOG1130 Predicted G-alpha GTPa 95.8 0.094 2E-06 46.3 9.4 257 64-344 29-342 (639)
216 PF09205 DUF1955: Domain of un 95.6 0.6 1.3E-05 34.5 11.5 138 65-207 15-152 (161)
217 PF09205 DUF1955: Domain of un 95.6 0.19 4.1E-06 37.0 8.8 133 245-382 15-153 (161)
218 smart00299 CLH Clathrin heavy 95.6 0.66 1.4E-05 35.2 12.8 86 90-201 10-95 (140)
219 smart00299 CLH Clathrin heavy 95.5 0.77 1.7E-05 34.8 13.7 129 49-221 7-136 (140)
220 KOG2280 Vacuolar assembly/sort 95.5 2.6 5.6E-05 40.6 25.8 101 265-374 686-795 (829)
221 COG4235 Cytochrome c biogenesi 95.3 0.2 4.4E-06 42.5 9.6 111 229-358 153-269 (287)
222 KOG2796 Uncharacterized conser 95.2 1.1 2.3E-05 37.5 13.1 123 65-206 190-317 (366)
223 PF14669 Asp_Glu_race_2: Putat 95.1 0.9 2E-05 35.9 11.7 92 251-342 95-206 (233)
224 COG4235 Cytochrome c biogenesi 95.1 0.23 5E-06 42.1 9.2 119 262-383 134-261 (287)
225 PF10300 DUF3808: Protein of u 94.7 0.88 1.9E-05 42.5 13.2 166 160-345 177-375 (468)
226 PF07079 DUF1347: Protein of u 94.7 3.2 6.9E-05 37.7 23.6 238 5-259 17-325 (549)
227 PF04053 Coatomer_WDAD: Coatom 94.7 0.32 7E-06 44.8 10.0 156 148-345 269-430 (443)
228 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.29 6.3E-06 44.3 9.4 66 85-169 73-141 (453)
229 PF13428 TPR_14: Tetratricopep 94.7 0.055 1.2E-06 31.6 3.4 32 351-382 3-34 (44)
230 PF04053 Coatomer_WDAD: Coatom 94.6 0.26 5.6E-06 45.4 9.2 130 65-206 274-404 (443)
231 KOG1920 IkappaB kinase complex 94.4 1.5 3.3E-05 44.3 14.2 109 261-374 933-1051(1265)
232 PF10300 DUF3808: Protein of u 94.3 0.76 1.7E-05 42.9 11.8 153 33-203 203-375 (468)
233 KOG1585 Protein required for f 94.3 2.3 5E-05 35.2 12.8 197 141-372 32-250 (308)
234 PF04184 ST7: ST7 protein; In 94.2 3.3 7.1E-05 38.1 14.8 92 292-383 266-380 (539)
235 COG4105 ComL DNA uptake lipopr 94.2 2.9 6.2E-05 35.0 15.9 82 141-223 36-119 (254)
236 PRK15331 chaperone protein Sic 94.2 0.26 5.5E-06 38.1 6.9 79 270-348 44-136 (165)
237 PF13176 TPR_7: Tetratricopept 94.2 0.074 1.6E-06 29.5 3.1 28 351-378 1-28 (36)
238 COG1729 Uncharacterized protei 94.2 0.32 7E-06 40.7 8.0 87 297-383 153-249 (262)
239 KOG2796 Uncharacterized conser 94.2 0.63 1.4E-05 38.8 9.4 129 92-261 182-315 (366)
240 COG4700 Uncharacterized protei 94.1 2.4 5.2E-05 33.6 14.8 103 47-169 87-189 (251)
241 PF08631 SPO22: Meiosis protei 93.9 3.8 8.1E-05 35.4 15.5 176 186-383 4-191 (278)
242 KOG1920 IkappaB kinase complex 93.9 3 6.5E-05 42.4 15.0 76 237-312 970-1053(1265)
243 PF00637 Clathrin: Region in C 93.8 0.022 4.7E-07 43.6 0.6 54 146-199 13-66 (143)
244 COG2976 Uncharacterized protei 93.8 2.9 6.2E-05 33.4 12.1 91 292-382 96-192 (207)
245 PF09613 HrpB1_HrpK: Bacterial 93.7 1.6 3.4E-05 33.7 10.3 69 293-361 18-89 (160)
246 COG1729 Uncharacterized protei 93.6 1.5 3.2E-05 36.9 10.9 99 51-169 144-244 (262)
247 PF00637 Clathrin: Region in C 93.6 0.06 1.3E-06 41.1 2.6 46 180-225 12-57 (143)
248 PF04097 Nic96: Nup93/Nic96; 93.5 4.5 9.7E-05 39.3 15.6 89 287-375 416-531 (613)
249 COG3629 DnrI DNA-binding trans 93.5 0.73 1.6E-05 39.3 9.0 78 88-184 154-236 (280)
250 PRK15331 chaperone protein Sic 93.4 1.3 2.7E-05 34.4 9.4 84 65-168 50-133 (165)
251 PF00515 TPR_1: Tetratricopept 93.1 0.15 3.2E-06 27.6 3.1 32 350-381 2-33 (34)
252 KOG0543 FKBP-type peptidyl-pro 93.0 0.61 1.3E-05 41.4 8.1 91 287-377 259-354 (397)
253 KOG2114 Vacuolar assembly/sort 93.0 7.9 0.00017 38.0 15.7 175 89-316 336-521 (933)
254 PF13929 mRNA_stabil: mRNA sta 93.0 4.8 0.0001 34.4 12.9 115 33-165 143-263 (292)
255 KOG0550 Molecular chaperone (D 92.8 7 0.00015 35.1 17.0 162 140-316 168-352 (486)
256 PF07719 TPR_2: Tetratricopept 92.8 0.23 5E-06 26.7 3.6 32 351-382 3-34 (34)
257 PF13512 TPR_18: Tetratricopep 92.4 0.91 2E-05 34.2 7.3 87 296-382 21-132 (142)
258 KOG4555 TPR repeat-containing 92.4 1.2 2.6E-05 32.9 7.6 77 240-316 51-146 (175)
259 COG3898 Uncharacterized membra 92.3 7.9 0.00017 34.6 22.9 109 7-117 97-218 (531)
260 PF08631 SPO22: Meiosis protei 92.3 6.8 0.00015 33.8 21.6 152 3-175 2-192 (278)
261 KOG2063 Vacuolar assembly/sort 92.3 4.4 9.6E-05 40.5 13.6 129 89-224 506-640 (877)
262 KOG2066 Vacuolar assembly/sort 92.0 13 0.00028 36.3 19.1 146 94-261 363-534 (846)
263 PF13428 TPR_14: Tetratricopep 91.6 0.37 8.1E-06 28.0 3.7 30 88-117 2-31 (44)
264 PF13170 DUF4003: Protein of u 91.6 2.5 5.5E-05 36.7 10.2 108 10-118 78-213 (297)
265 COG3629 DnrI DNA-binding trans 91.3 1.4 3.1E-05 37.6 8.1 59 287-345 155-215 (280)
266 PF13176 TPR_7: Tetratricopept 91.3 0.49 1.1E-05 26.1 3.8 26 142-167 1-26 (36)
267 KOG0543 FKBP-type peptidyl-pro 90.9 1.3 2.9E-05 39.3 7.8 108 239-346 215-355 (397)
268 KOG0991 Replication factor C, 90.9 4.8 0.0001 33.2 10.2 139 33-186 145-283 (333)
269 KOG1941 Acetylcholine receptor 90.8 1.6 3.5E-05 38.2 8.0 124 237-375 127-272 (518)
270 PF13181 TPR_8: Tetratricopept 90.0 0.66 1.4E-05 24.9 3.6 31 351-381 3-33 (34)
271 KOG0550 Molecular chaperone (D 89.9 14 0.00031 33.2 15.4 50 65-114 262-314 (486)
272 TIGR02561 HrpB1_HrpK type III 89.8 7.1 0.00015 29.7 9.7 84 296-379 21-123 (153)
273 KOG4555 TPR repeat-containing 89.8 1.4 3.1E-05 32.5 5.9 50 296-345 54-105 (175)
274 KOG2114 Vacuolar assembly/sort 89.7 22 0.00048 35.1 23.4 92 33-134 383-475 (933)
275 PF13512 TPR_18: Tetratricopep 89.7 5.5 0.00012 30.1 9.2 66 49-118 11-78 (142)
276 PF04184 ST7: ST7 protein; In 89.6 5.6 0.00012 36.7 10.7 51 65-115 272-323 (539)
277 KOG4570 Uncharacterized conser 89.5 1.1 2.4E-05 38.3 6.0 108 81-205 58-165 (418)
278 COG4105 ComL DNA uptake lipopr 89.5 12 0.00025 31.5 15.0 48 236-283 171-224 (254)
279 PF10602 RPN7: 26S proteasome 88.4 5 0.00011 31.9 8.8 64 141-204 37-102 (177)
280 COG4649 Uncharacterized protei 88.3 8.3 0.00018 30.3 9.3 110 6-115 70-195 (221)
281 PRK11906 transcriptional regul 88.0 15 0.00033 33.7 12.4 84 33-117 273-368 (458)
282 PF13374 TPR_10: Tetratricopep 87.6 1.2 2.5E-05 25.1 3.7 28 350-377 3-30 (42)
283 PF13762 MNE1: Mitochondrial s 87.5 11 0.00023 28.7 10.4 102 78-193 28-133 (145)
284 cd00923 Cyt_c_Oxidase_Va Cytoc 87.4 2.8 6.1E-05 29.1 5.7 61 156-217 23-83 (103)
285 COG3118 Thioredoxin domain-con 87.2 18 0.00039 31.1 11.6 129 241-369 143-292 (304)
286 PF07035 Mic1: Colon cancer-as 86.6 14 0.0003 29.0 12.0 46 161-210 15-60 (167)
287 PF13431 TPR_17: Tetratricopep 86.3 0.73 1.6E-05 25.0 2.1 22 348-369 12-33 (34)
288 KOG0276 Vesicle coat complex C 86.2 12 0.00027 35.4 10.8 132 89-259 616-748 (794)
289 PRK11906 transcriptional regul 86.2 28 0.0006 32.1 13.9 138 66-224 272-422 (458)
290 COG3118 Thioredoxin domain-con 86.2 21 0.00045 30.7 15.7 144 96-282 143-291 (304)
291 TIGR02508 type_III_yscG type I 86.1 6.6 0.00014 27.5 7.0 88 66-179 19-106 (115)
292 PF11207 DUF2989: Protein of u 86.0 6.3 0.00014 31.7 8.0 78 67-160 121-198 (203)
293 PF09613 HrpB1_HrpK: Bacterial 86.0 14 0.00031 28.6 13.5 64 51-116 9-73 (160)
294 PF13431 TPR_17: Tetratricopep 85.9 1 2.3E-05 24.4 2.6 31 76-107 3-33 (34)
295 COG4785 NlpI Lipoprotein NlpI, 85.7 18 0.0004 29.6 14.1 66 139-205 98-163 (297)
296 KOG1585 Protein required for f 85.5 20 0.00044 29.9 15.4 52 288-340 193-250 (308)
297 PF13929 mRNA_stabil: mRNA sta 85.4 23 0.0005 30.4 12.5 137 82-224 107-252 (292)
298 KOG2610 Uncharacterized conser 85.3 25 0.00055 30.9 15.6 140 152-311 115-273 (491)
299 PF13934 ELYS: Nuclear pore co 85.1 21 0.00045 29.7 12.2 72 290-362 113-185 (226)
300 PF13174 TPR_6: Tetratricopept 84.9 1.6 3.5E-05 23.0 3.1 28 354-381 5-32 (33)
301 PF00515 TPR_1: Tetratricopept 84.8 1.8 3.9E-05 23.2 3.3 28 141-168 2-29 (34)
302 KOG4234 TPR repeat-containing 84.0 6.4 0.00014 31.7 7.0 60 287-346 136-197 (271)
303 PF13374 TPR_10: Tetratricopep 83.8 2.4 5.2E-05 23.8 3.8 28 141-168 3-30 (42)
304 PRK13342 recombination factor 83.3 38 0.00082 31.2 15.5 138 68-207 153-302 (413)
305 KOG2280 Vacuolar assembly/sort 83.2 49 0.0011 32.5 22.3 86 287-376 686-771 (829)
306 PF02284 COX5A: Cytochrome c o 83.2 4.2 9E-05 28.6 5.1 47 158-204 28-74 (108)
307 PF07721 TPR_4: Tetratricopept 82.9 2.5 5.5E-05 21.2 3.1 19 323-341 7-25 (26)
308 PF10602 RPN7: 26S proteasome 82.7 5.8 0.00013 31.5 6.6 89 287-375 38-139 (177)
309 COG4649 Uncharacterized protei 82.6 22 0.00048 28.0 13.9 140 50-211 60-203 (221)
310 KOG2610 Uncharacterized conser 82.4 20 0.00044 31.4 9.9 136 65-201 116-273 (491)
311 TIGR03504 FimV_Cterm FimV C-te 82.3 1.9 4.2E-05 25.1 2.8 24 355-378 5-28 (44)
312 smart00028 TPR Tetratricopepti 82.2 2.9 6.2E-05 21.1 3.5 30 351-380 3-32 (34)
313 COG4455 ImpE Protein of avirul 81.6 10 0.00022 31.0 7.4 76 90-184 4-81 (273)
314 COG3947 Response regulator con 81.0 12 0.00026 32.1 7.9 58 319-376 281-340 (361)
315 PRK09687 putative lyase; Provi 80.6 37 0.0008 29.3 23.0 213 137-380 34-265 (280)
316 COG3898 Uncharacterized membra 80.3 45 0.00097 30.1 25.6 145 33-204 68-217 (531)
317 COG2976 Uncharacterized protei 79.8 30 0.00065 27.8 10.8 129 49-205 54-189 (207)
318 PF07719 TPR_2: Tetratricopept 79.4 3.7 8.1E-05 21.7 3.3 27 142-168 3-29 (34)
319 COG5108 RPO41 Mitochondrial DN 78.7 11 0.00025 36.0 7.8 73 290-362 33-116 (1117)
320 cd00923 Cyt_c_Oxidase_Va Cytoc 78.6 15 0.00032 25.7 6.4 46 137-183 39-84 (103)
321 PF07079 DUF1347: Protein of u 78.2 57 0.0012 30.1 24.9 140 33-187 21-179 (549)
322 COG3947 Response regulator con 78.1 14 0.00031 31.6 7.5 56 93-167 285-340 (361)
323 PF14853 Fis1_TPR_C: Fis1 C-te 77.0 4 8.7E-05 24.9 3.1 28 355-382 7-34 (53)
324 PF07163 Pex26: Pex26 protein; 76.9 26 0.00057 29.9 8.7 94 144-256 87-182 (309)
325 KOG4570 Uncharacterized conser 76.8 11 0.00023 32.7 6.5 80 33-117 79-165 (418)
326 TIGR02561 HrpB1_HrpK type III 76.6 32 0.00068 26.4 12.5 65 51-117 9-74 (153)
327 cd00280 TRFH Telomeric Repeat 76.2 16 0.00034 29.0 6.8 64 301-364 85-158 (200)
328 COG4455 ImpE Protein of avirul 76.1 9.5 0.00021 31.2 5.7 59 267-325 5-80 (273)
329 PF11207 DUF2989: Protein of u 75.6 41 0.0009 27.2 9.6 74 33-107 121-198 (203)
330 PF02259 FAT: FAT domain; Int 75.6 58 0.0013 28.9 14.4 61 317-377 146-212 (352)
331 PF11848 DUF3368: Domain of un 75.1 10 0.00022 22.5 4.4 33 64-96 14-46 (48)
332 KOG0403 Neoplastic transformat 75.0 69 0.0015 29.5 13.1 61 319-379 511-573 (645)
333 PF02284 COX5A: Cytochrome c o 74.4 28 0.0006 24.7 8.4 46 137-183 42-87 (108)
334 TIGR03504 FimV_Cterm FimV C-te 73.9 4.1 8.8E-05 23.7 2.5 24 181-204 5-28 (44)
335 COG0735 Fur Fe2+/Zn2+ uptake r 73.2 27 0.00058 26.7 7.5 63 161-224 7-69 (145)
336 KOG1941 Acetylcholine receptor 72.0 19 0.00042 31.9 7.0 59 228-286 158-229 (518)
337 PF13762 MNE1: Mitochondrial s 71.6 43 0.00092 25.6 10.7 82 142-223 41-128 (145)
338 KOG4077 Cytochrome c oxidase, 70.8 18 0.0004 26.6 5.6 47 158-204 67-113 (149)
339 PF10579 Rapsyn_N: Rapsyn N-te 70.7 13 0.00028 24.8 4.5 43 329-371 18-65 (80)
340 KOG4279 Serine/threonine prote 69.7 87 0.0019 31.0 11.2 81 293-383 295-400 (1226)
341 KOG0276 Vesicle coat complex C 69.4 53 0.0011 31.5 9.6 103 241-348 646-752 (794)
342 cd08332 CARD_CASP2 Caspase act 69.1 29 0.00062 24.0 6.3 46 15-60 24-76 (90)
343 KOG4648 Uncharacterized conser 68.6 8.3 0.00018 33.8 4.1 52 148-201 105-157 (536)
344 cd08326 CARD_CASP9 Caspase act 68.3 33 0.00071 23.4 6.3 47 15-61 20-73 (84)
345 PF02259 FAT: FAT domain; Int 67.8 89 0.0019 27.7 16.6 59 287-345 148-212 (352)
346 PF11846 DUF3366: Domain of un 67.8 36 0.00079 27.4 7.8 51 65-115 121-172 (193)
347 PF11838 ERAP1_C: ERAP1-like C 67.1 88 0.0019 27.4 10.9 90 63-173 141-235 (324)
348 KOG1258 mRNA processing protei 67.0 1.2E+02 0.0026 29.0 28.1 118 33-168 60-179 (577)
349 cd08819 CARD_MDA5_2 Caspase ac 66.9 38 0.00082 23.2 6.5 65 304-370 21-87 (88)
350 KOG1464 COP9 signalosome, subu 66.3 83 0.0018 26.9 13.6 178 136-345 22-219 (440)
351 PF10366 Vps39_1: Vacuolar sor 66.3 23 0.00051 25.4 5.6 26 288-313 42-67 (108)
352 PF02607 B12-binding_2: B12 bi 66.3 15 0.00032 24.4 4.4 49 53-101 2-50 (79)
353 PF08311 Mad3_BUB1_I: Mad3/BUB 66.2 51 0.0011 24.4 7.7 40 303-342 81-124 (126)
354 COG4785 NlpI Lipoprotein NlpI, 65.6 24 0.00053 28.9 5.9 65 278-342 87-158 (297)
355 PF09477 Type_III_YscG: Bacter 65.1 49 0.0011 23.7 7.9 77 299-379 20-99 (116)
356 COG0457 NrfG FOG: TPR repeat [ 64.8 70 0.0015 25.4 18.6 165 50-260 60-230 (291)
357 PF08311 Mad3_BUB1_I: Mad3/BUB 63.7 58 0.0013 24.1 8.1 46 67-112 78-124 (126)
358 PF12926 MOZART2: Mitotic-spin 63.1 32 0.00069 23.4 5.2 44 73-116 29-72 (88)
359 KOG4234 TPR repeat-containing 63.1 19 0.0004 29.2 4.8 19 241-259 104-122 (271)
360 PF10345 Cohesin_load: Cohesin 63.0 1.6E+02 0.0034 28.9 21.9 135 51-203 61-207 (608)
361 PRK10564 maltose regulon perip 62.3 11 0.00024 32.4 3.8 36 347-382 254-290 (303)
362 KOG0890 Protein kinase of the 61.8 2.9E+02 0.0064 31.6 19.8 64 317-380 1670-1733(2382)
363 PF14689 SPOB_a: Sensor_kinase 61.6 27 0.00058 22.1 4.6 23 322-344 28-50 (62)
364 PRK10564 maltose regulon perip 61.2 17 0.00037 31.3 4.7 45 138-182 254-299 (303)
365 cd08819 CARD_MDA5_2 Caspase ac 61.2 49 0.0011 22.6 5.9 39 243-282 47-85 (88)
366 KOG0545 Aryl-hydrocarbon recep 60.6 57 0.0012 27.4 7.3 65 318-382 231-297 (329)
367 COG2909 MalT ATP-dependent tra 59.9 2E+02 0.0044 29.1 15.8 69 140-208 580-651 (894)
368 PF11817 Foie-gras_1: Foie gra 59.9 26 0.00057 29.6 5.7 55 322-376 183-245 (247)
369 PF04097 Nic96: Nup93/Nic96; 59.7 1.8E+02 0.0039 28.6 13.0 20 238-257 264-283 (613)
370 PRK13800 putative oxidoreducta 59.5 2.2E+02 0.0048 29.5 23.6 230 137-377 632-880 (897)
371 PF09454 Vps23_core: Vps23 cor 59.2 23 0.00049 22.7 3.9 56 44-103 3-58 (65)
372 KOG3807 Predicted membrane pro 58.9 65 0.0014 28.4 7.7 48 65-112 288-336 (556)
373 PF11846 DUF3366: Domain of un 58.8 30 0.00064 27.9 5.7 34 347-380 142-175 (193)
374 PRK13342 recombination factor 58.7 1.5E+02 0.0033 27.3 12.6 51 51-101 229-279 (413)
375 PRK09462 fur ferric uptake reg 57.9 83 0.0018 24.0 8.0 60 164-224 6-66 (148)
376 PF11838 ERAP1_C: ERAP1-like C 57.7 1.3E+02 0.0029 26.3 14.3 156 33-205 55-231 (324)
377 KOG1586 Protein required for f 56.9 1.2E+02 0.0026 25.5 15.8 21 296-316 165-185 (288)
378 PRK11639 zinc uptake transcrip 55.7 89 0.0019 24.6 7.7 58 166-224 17-74 (169)
379 PRK11619 lytic murein transgly 55.6 2.2E+02 0.0047 28.2 23.2 272 94-375 40-338 (644)
380 PF10366 Vps39_1: Vacuolar sor 55.6 75 0.0016 22.8 6.6 27 142-168 41-67 (108)
381 TIGR01503 MthylAspMut_E methyl 55.2 1.2E+02 0.0026 28.1 9.1 148 33-199 29-193 (480)
382 PF11848 DUF3368: Domain of un 54.7 43 0.00094 19.8 4.9 31 152-182 14-44 (48)
383 PRK14700 recombination factor 54.6 1.5E+02 0.0032 25.9 11.6 97 6-103 77-177 (300)
384 PF10579 Rapsyn_N: Rapsyn N-te 54.5 57 0.0012 21.9 5.2 46 64-109 18-65 (80)
385 KOG4648 Uncharacterized conser 54.4 22 0.00047 31.3 4.2 78 271-348 105-197 (536)
386 cd08329 CARD_BIRC2_BIRC3 Caspa 54.3 64 0.0014 22.5 5.9 27 33-59 52-78 (94)
387 PF03790 KNOX1: KNOX1 domain ; 53.9 32 0.00069 20.1 3.5 32 50-81 11-42 (45)
388 KOG2297 Predicted translation 53.8 1.5E+02 0.0033 25.9 9.0 21 263-283 321-341 (412)
389 smart00777 Mad3_BUB1_I Mad3/BU 53.6 62 0.0014 24.0 6.0 43 69-111 80-123 (125)
390 cd08326 CARD_CASP9 Caspase act 53.6 20 0.00044 24.3 3.3 22 137-158 58-79 (84)
391 COG2405 Predicted nucleic acid 53.2 51 0.0011 24.8 5.3 61 33-97 94-154 (157)
392 PF11663 Toxin_YhaV: Toxin wit 53.0 12 0.00027 27.8 2.2 32 151-184 106-137 (140)
393 PF14689 SPOB_a: Sensor_kinase 52.6 22 0.00048 22.4 3.1 27 142-168 25-51 (62)
394 cd08323 CARD_APAF1 Caspase act 52.6 73 0.0016 21.8 6.0 49 13-61 16-71 (86)
395 KOG4567 GTPase-activating prot 51.8 1E+02 0.0022 27.0 7.5 44 72-115 263-306 (370)
396 PF07035 Mic1: Colon cancer-as 51.8 1.2E+02 0.0025 23.9 16.1 127 228-380 25-151 (167)
397 PF04090 RNA_pol_I_TF: RNA pol 51.7 80 0.0017 25.6 6.8 32 352-383 142-173 (199)
398 PF12968 DUF3856: Domain of Un 51.5 96 0.0021 22.8 6.8 67 262-343 54-126 (144)
399 KOG1586 Protein required for f 51.4 1.5E+02 0.0032 25.0 8.3 27 149-175 163-189 (288)
400 PF02184 HAT: HAT (Half-A-TPR) 51.0 31 0.00067 18.5 2.9 20 9-28 2-21 (32)
401 PF06552 TOM20_plant: Plant sp 49.8 55 0.0012 26.0 5.4 36 347-382 66-113 (186)
402 PF09454 Vps23_core: Vps23 cor 49.8 26 0.00057 22.4 3.1 50 137-187 5-54 (65)
403 PF10255 Paf67: RNA polymerase 49.8 43 0.00093 30.6 5.6 57 287-343 124-190 (404)
404 COG0735 Fur Fe2+/Zn2+ uptake r 48.7 93 0.002 23.8 6.6 51 141-191 21-71 (145)
405 KOG4507 Uncharacterized conser 48.0 63 0.0014 30.9 6.3 27 142-168 678-704 (886)
406 KOG4334 Uncharacterized conser 47.7 15 0.00032 33.7 2.3 136 82-223 410-573 (650)
407 TIGR02508 type_III_yscG type I 47.4 1E+02 0.0022 21.9 7.5 76 301-379 21-98 (115)
408 COG5108 RPO41 Mitochondrial DN 47.2 1.6E+02 0.0034 28.9 8.7 95 92-202 33-130 (1117)
409 PRK11639 zinc uptake transcrip 46.6 79 0.0017 24.9 6.1 54 140-193 25-78 (169)
410 PF10345 Cohesin_load: Cohesin 46.3 3E+02 0.0065 27.0 24.9 326 33-377 154-605 (608)
411 PF09477 Type_III_YscG: Bacter 43.7 1.2E+02 0.0026 21.8 7.6 81 65-170 19-99 (116)
412 COG1747 Uncharacterized N-term 43.6 3E+02 0.0064 26.2 15.0 112 230-345 97-233 (711)
413 cd08332 CARD_CASP2 Caspase act 43.2 29 0.00063 23.9 2.8 19 137-155 62-80 (90)
414 cd07153 Fur_like Ferric uptake 43.0 72 0.0016 23.0 5.1 47 146-192 6-52 (116)
415 cd07153 Fur_like Ferric uptake 43.0 70 0.0015 23.0 5.0 47 181-227 6-52 (116)
416 PF04034 DUF367: Domain of unk 42.5 1.4E+02 0.003 22.2 7.3 60 317-376 66-126 (127)
417 smart00777 Mad3_BUB1_I Mad3/BU 42.1 1.4E+02 0.0031 22.1 8.1 40 302-341 80-123 (125)
418 KOG2034 Vacuolar sorting prote 41.9 4E+02 0.0086 27.2 19.1 16 317-332 628-643 (911)
419 PF01475 FUR: Ferric uptake re 41.8 64 0.0014 23.5 4.7 44 181-224 13-56 (120)
420 PF09986 DUF2225: Uncharacteri 41.8 1E+02 0.0022 25.4 6.2 31 321-351 169-199 (214)
421 smart00386 HAT HAT (Half-A-TPR 41.3 50 0.0011 16.6 3.5 17 300-316 2-18 (33)
422 PF07163 Pex26: Pex26 protein; 40.6 1.7E+02 0.0038 25.2 7.3 90 91-198 87-181 (309)
423 cd00280 TRFH Telomeric Repeat 40.5 1.9E+02 0.0042 23.2 12.3 87 191-292 85-173 (200)
424 PRK15180 Vi polysaccharide bio 40.2 2.1E+02 0.0045 26.9 8.2 88 295-382 333-424 (831)
425 PRK09687 putative lyase; Provi 39.9 2.5E+02 0.0054 24.3 24.0 39 321-360 239-278 (280)
426 PF12796 Ank_2: Ankyrin repeat 39.7 1.1E+02 0.0025 20.3 6.1 20 92-111 28-47 (89)
427 KOG0991 Replication factor C, 39.5 81 0.0017 26.4 5.1 56 37-97 227-282 (333)
428 KOG3364 Membrane protein invol 38.8 53 0.0012 24.7 3.6 24 358-381 80-103 (149)
429 PF10475 DUF2450: Protein of u 38.4 71 0.0015 27.8 5.1 28 141-168 128-155 (291)
430 smart00804 TAP_C C-terminal do 38.2 31 0.00067 22.0 2.1 24 153-176 38-62 (63)
431 PRK15180 Vi polysaccharide bio 38.1 3.5E+02 0.0076 25.5 9.8 53 65-118 336-388 (831)
432 PRK13341 recombination factor 37.9 4.4E+02 0.0096 26.6 12.0 95 7-102 208-308 (725)
433 COG5187 RPN7 26S proteasome re 37.8 2.8E+02 0.006 24.2 11.9 142 67-224 94-241 (412)
434 KOG4507 Uncharacterized conser 37.6 1.2E+02 0.0025 29.3 6.3 86 298-383 620-710 (886)
435 PF12862 Apc5: Anaphase-promot 37.4 74 0.0016 22.0 4.2 23 355-377 47-69 (94)
436 PF04910 Tcf25: Transcriptiona 37.3 3.2E+02 0.0069 24.8 11.7 67 48-114 99-166 (360)
437 PRK14958 DNA polymerase III su 37.3 3.4E+02 0.0075 25.9 9.7 89 77-175 190-280 (509)
438 PF01475 FUR: Ferric uptake re 37.0 64 0.0014 23.5 4.0 49 144-192 11-59 (120)
439 PRK07003 DNA polymerase III su 36.9 4.7E+02 0.01 26.6 13.2 99 68-174 180-279 (830)
440 cd08330 CARD_ASC_NALP1 Caspase 36.2 1.4E+02 0.0029 20.2 5.9 47 13-59 17-70 (82)
441 KOG0292 Vesicle coat complex C 35.8 3.7E+02 0.0079 27.6 9.5 130 241-381 652-785 (1202)
442 PF10475 DUF2450: Protein of u 35.8 2E+02 0.0043 25.1 7.5 97 239-337 105-217 (291)
443 PRK08691 DNA polymerase III su 35.8 4E+02 0.0086 26.7 9.9 99 69-175 181-280 (709)
444 KOG2300 Uncharacterized conser 35.6 3.9E+02 0.0084 25.3 10.7 137 237-373 328-509 (629)
445 KOG1550 Extracellular protein 35.5 4.2E+02 0.0091 25.7 12.6 150 34-206 228-395 (552)
446 COG1747 Uncharacterized N-term 35.4 4E+02 0.0087 25.4 22.2 169 138-316 64-236 (711)
447 KOG4077 Cytochrome c oxidase, 35.4 1.9E+02 0.0041 21.6 6.2 46 137-183 81-126 (149)
448 KOG2581 26S proteasome regulat 35.1 3.6E+02 0.0078 24.8 9.9 26 287-312 211-236 (493)
449 PF11663 Toxin_YhaV: Toxin wit 35.0 34 0.00074 25.6 2.2 32 185-218 105-136 (140)
450 PF06552 TOM20_plant: Plant sp 34.8 2.4E+02 0.0052 22.6 7.8 43 156-206 96-138 (186)
451 PRK12356 glutaminase; Reviewed 34.8 1.8E+02 0.004 25.6 6.9 60 317-376 231-303 (319)
452 cd08780 Death_TRADD Death Doma 34.5 1.3E+02 0.0028 20.7 4.6 50 291-340 38-88 (90)
453 PF10255 Paf67: RNA polymerase 34.5 1.3E+02 0.0027 27.7 6.1 66 91-167 126-191 (404)
454 KOG1498 26S proteasome regulat 34.4 3.6E+02 0.0079 24.6 13.4 102 237-351 136-246 (439)
455 PRK13341 recombination factor 33.8 5.1E+02 0.011 26.2 14.2 119 69-190 171-308 (725)
456 PF02847 MA3: MA3 domain; Int 32.8 1.1E+02 0.0024 21.8 4.7 62 144-207 6-69 (113)
457 COG0457 NrfG FOG: TPR repeat [ 32.2 2.5E+02 0.0054 22.0 22.6 118 66-201 37-156 (291)
458 KOG2297 Predicted translation 32.2 3.5E+02 0.0077 23.8 11.8 24 262-286 370-393 (412)
459 PF12862 Apc5: Anaphase-promot 31.9 1.7E+02 0.0037 20.1 5.8 52 62-113 8-67 (94)
460 KOG2396 HAT (Half-A-TPR) repea 31.9 4.5E+02 0.0098 24.9 23.6 88 288-376 463-557 (568)
461 KOG0376 Serine-threonine phosp 31.7 1.1E+02 0.0023 28.5 5.1 102 147-273 11-115 (476)
462 KOG0686 COP9 signalosome, subu 31.6 4.1E+02 0.009 24.4 10.1 65 88-168 151-215 (466)
463 KOG2066 Vacuolar assembly/sort 31.5 5.6E+02 0.012 25.9 20.1 26 143-168 508-533 (846)
464 smart00638 LPD_N Lipoprotein N 31.2 5E+02 0.011 25.2 21.7 235 86-365 309-563 (574)
465 PF09868 DUF2095: Uncharacteri 31.0 2.1E+02 0.0045 20.8 5.4 42 54-99 66-107 (128)
466 PF09797 NatB_MDM20: N-acetylt 30.9 3E+02 0.0064 24.9 8.1 40 139-178 216-255 (365)
467 PF04190 DUF410: Protein of un 30.4 3.5E+02 0.0075 23.1 16.9 85 228-314 86-170 (260)
468 KOG1550 Extracellular protein 30.0 5.2E+02 0.011 25.0 12.9 175 10-206 228-428 (552)
469 KOG0989 Replication factor C, 29.7 4E+02 0.0086 23.6 10.0 49 67-117 190-238 (346)
470 cd08810 CARD_BCL10 Caspase act 29.7 1.9E+02 0.004 19.8 5.2 26 33-59 45-70 (84)
471 PF12926 MOZART2: Mitotic-spin 29.3 1.9E+02 0.0042 19.8 5.8 64 138-203 8-71 (88)
472 PF11817 Foie-gras_1: Foie gra 29.2 1.5E+02 0.0032 25.0 5.5 53 290-342 183-243 (247)
473 PF02607 B12-binding_2: B12 bi 28.7 87 0.0019 20.6 3.3 40 151-190 12-51 (79)
474 PRK12357 glutaminase; Reviewed 28.4 3E+02 0.0065 24.4 7.1 25 319-343 238-262 (326)
475 PRK10941 hypothetical protein; 28.3 2.2E+02 0.0047 24.5 6.3 74 287-360 183-262 (269)
476 PF07720 TPR_3: Tetratricopept 28.2 1.1E+02 0.0024 16.8 3.6 17 355-371 7-23 (36)
477 PF07443 HARP: HepA-related pr 28.0 46 0.001 20.5 1.6 32 101-150 6-37 (55)
478 COG4976 Predicted methyltransf 27.8 1.1E+02 0.0025 25.5 4.2 54 328-381 6-61 (287)
479 cd08323 CARD_APAF1 Caspase act 27.7 92 0.002 21.3 3.2 43 71-117 16-58 (86)
480 KOG3636 Uncharacterized conser 27.6 5.1E+02 0.011 24.1 10.2 172 69-274 72-271 (669)
481 PF11768 DUF3312: Protein of u 27.5 4.8E+02 0.01 25.1 8.6 66 143-210 411-479 (545)
482 COG4003 Uncharacterized protei 26.7 65 0.0014 21.6 2.2 31 88-118 31-62 (98)
483 PF06957 COPI_C: Coatomer (COP 26.7 2.4E+02 0.0052 26.1 6.5 20 146-165 124-143 (422)
484 smart00544 MA3 Domain in DAP-5 26.6 2.4E+02 0.0052 20.0 8.7 61 144-206 6-68 (113)
485 PRK14956 DNA polymerase III su 26.5 5.7E+02 0.012 24.3 9.1 100 70-176 184-284 (484)
486 COG2405 Predicted nucleic acid 26.2 1.3E+02 0.0028 22.8 3.8 42 177-219 112-153 (157)
487 PF09797 NatB_MDM20: N-acetylt 26.2 2.8E+02 0.0061 25.0 7.1 53 65-118 196-248 (365)
488 cd08327 CARD_RAIDD Caspase act 26.0 1.8E+02 0.0038 20.3 4.4 27 33-59 50-76 (94)
489 cd08812 CARD_RIG-I_like Caspas 25.9 2.1E+02 0.0046 19.6 4.8 46 237-282 39-85 (88)
490 cd08789 CARD_IPS-1_RIG-I Caspa 25.9 1.9E+02 0.0042 19.6 4.5 46 236-282 36-81 (84)
491 PF13934 ELYS: Nuclear pore co 25.9 3.9E+02 0.0084 22.2 12.7 86 287-376 78-167 (226)
492 PRK12798 chemotaxis protein; R 25.4 5.4E+02 0.012 23.8 15.5 135 245-379 125-287 (421)
493 PF09868 DUF2095: Uncharacteri 25.2 1.5E+02 0.0033 21.5 3.9 27 92-118 66-92 (128)
494 KOG1258 mRNA processing protei 25.1 6.4E+02 0.014 24.4 19.8 91 287-379 299-396 (577)
495 smart00638 LPD_N Lipoprotein N 25.0 6.4E+02 0.014 24.5 16.5 131 141-275 419-559 (574)
496 PRK14963 DNA polymerase III su 24.9 4.8E+02 0.01 25.0 8.4 97 69-174 178-275 (504)
497 KOG4567 GTPase-activating prot 24.7 4.9E+02 0.011 23.0 10.5 97 160-273 263-359 (370)
498 PF02847 MA3: MA3 domain; Int 24.3 1.9E+02 0.0042 20.5 4.7 25 91-115 6-30 (113)
499 PF04910 Tcf25: Transcriptiona 23.9 5.5E+02 0.012 23.3 15.2 145 229-377 37-221 (360)
500 PRK00971 glutaminase; Provisio 23.9 4E+02 0.0086 23.5 7.0 56 321-376 231-299 (307)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.5e-58 Score=446.82 Aligned_cols=360 Identities=15% Similarity=0.171 Sum_probs=342.2
Q ss_pred ccccCCChHHHHHHHHHHHHcccch-hhHHh-----------hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHH
Q 040338 3 ACGSLKSLPIARKIHAQLISTCLIS-SIFLQ-----------LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKM 70 (385)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~ 70 (385)
.|.+.|+++.|+++|++|.+.++.+ +...+ .+++|.++|+.|+.||..+||.+|.+|++ .|+++.
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k---~g~~e~ 455 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS---SQDIDG 455 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh---CcCHHH
Confidence 4667899999999999999999654 33332 69999999999999999999999999777 899999
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHH
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 150 (385)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+ .||..+|+.||.+|
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv------------------~PdvvTynaLI~gy 517 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV------------------EANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC------------------CCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHH--hCCCCchHHHHHHHHHHHhcCCCC-
Q 040338 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH--MEPSLDVFVGSGLIDMYLKCGCNG- 227 (385)
Q Consensus 151 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~- 227 (385)
++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|+.+
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999987 678999999999999999999876
Q ss_pred ------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc----CChhhHHHHHHHHHhcCCCCchHHHH-----
Q 040338 228 ------------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR----RNMISWMVLISAFSQAGVLEKPRFFF----- 286 (385)
Q Consensus 228 ------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~a~~~~----- 286 (385)
+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.+++
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999985 79999999999999999999999999
Q ss_pred --------HHHHHHHHhcccCChhhHHHHHHHHHhccc---hhhHHHHHHHHHccCCHHHHHHHHHhCCCC---CCcchH
Q 040338 287 --------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK---PTCVIW 352 (385)
Q Consensus 287 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~ 352 (385)
+|+.+|.+|++.|++++|.++|++|.+.+. ..+|++||.+|++.|++++|.++|++|... ||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999999999999999999999998776 889999999999999999999999999864 999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 353 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
++++.+|++.|++++|.+++++|.+.|+.|.
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999998875
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.2e-57 Score=445.26 Aligned_cols=378 Identities=28% Similarity=0.418 Sum_probs=327.8
Q ss_pred ccccCCChHHHHHHHHHHHHcccchhhHHh-----------hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHH
Q 040338 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMA 71 (385)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a 71 (385)
+|++.+++..++++|.++.+.|+.|+.+++ ++++|.++|++|+.||.++||+||.+|++ .|++++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~---~g~~~eA 272 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE---NGECLEG 272 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHh---CCCHHHH
Confidence 344444444444445555555555554444 88999999999999999999999999888 9999999
Q ss_pred HHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCcc----ccc---------cchHHHHHHhcCCCCC
Q 040338 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF----CWK---------FGIIRLLIMFQKMPER 138 (385)
Q Consensus 72 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~---------~~~~~a~~~~~~~~~~ 138 (385)
+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|.. +++ |++++|.++|++|..|
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999876642 333 9999999999999999
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHH
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 218 (385)
|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++|++
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCC---------C----------------------------------CchhhHH--------------------
Q 040338 219 MYLKCGCNG---------I----------------------------------ESSIQIG-------------------- 235 (385)
Q Consensus 219 ~~~~~g~~~---------~----------------------------------~~~~~~~-------------------- 235 (385)
+|++.|+.+ . .||..||
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 999999766 2 3333333
Q ss_pred ---------------HHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH-------------H
Q 040338 236 ---------------KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------------F 287 (385)
Q Consensus 236 ---------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~-------------~ 287 (385)
++||++|+++|++++|.++|+.| ++|..+||+||.+|+++|+.++|+++| |
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 34445666667777777777777 778889999999999999999999999 9
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHH-hccc---hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMA-KFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 363 (385)
|+.++.+|++.|++++|.++|+.|. +.+. ..+|+.++++|+++|++++|.+++++|.-+||..+|++|+.+|..+|
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998 4555 67999999999999999999999999987899999999999998888
Q ss_pred ChHHHHHHHHHHHhccccCCC
Q 040338 364 NTKLAELVMRNLLQLDVKVFG 384 (385)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~~~~ 384 (385)
+.+.+....+++.+..|.+++
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcc
Confidence 888888888888887776553
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.2e-57 Score=435.52 Aligned_cols=378 Identities=19% Similarity=0.268 Sum_probs=354.7
Q ss_pred CcccccCCChHHHHHHHHHHHHcccchhhHHh-----------hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChH
Q 040338 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIK 69 (385)
Q Consensus 1 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 69 (385)
|++|++.++++.|+++|..|.+.|+.|+.+++ ++++|.++|++|+.||.++||++|.+|++ .|+++
T Consensus 130 l~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~---~g~~~ 206 (697)
T PLN03081 130 VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD---AGNYR 206 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHH---CcCHH
Confidence 35789999999999999999999999999887 99999999999999999999999999888 89999
Q ss_pred HHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc----cccc---------cchHHHHHHhcCCC
Q 040338 70 MALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL----FCWK---------FGIIRLLIMFQKMP 136 (385)
Q Consensus 70 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~---------~~~~~a~~~~~~~~ 136 (385)
+|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|. .+++ |++++|.++|++|+
T Consensus 207 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999998877654 2333 99999999999999
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 216 (385)
++|+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+|++|
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC---------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc----CChhhHHHHHHHHHhcCCCCchH
Q 040338 217 IDMYLKCGCNG---------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR----RNMISWMVLISAFSQAGVLEKPR 283 (385)
Q Consensus 217 i~~~~~~g~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~a~ 283 (385)
+++|+++|+.+ ..||..+|++||.+|++.|+.++|.++|++|.+ ||..||+.++.+|++.|..++|.
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999877 679999999999999999999999999999975 89999999999999999999999
Q ss_pred HHH--------------HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-
Q 040338 284 FFF--------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P- 347 (385)
Q Consensus 284 ~~~--------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p- 347 (385)
++| +|+.++++|++.|++++|.+++++|...+...+|++++.+|+..|+++.|.++++++.+. |
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 998 899999999999999999999998865555888999999999999999999999998763 5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 348 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
+..+|..|++.|++.|++++|.+++++|.+.|+.
T Consensus 527 ~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 4679999999999999999999999999999875
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-56 Score=443.30 Aligned_cols=377 Identities=21% Similarity=0.291 Sum_probs=301.7
Q ss_pred cccccCCChHHHHHHHHHHHHcccchhhHHh-----------hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHH
Q 040338 2 KACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKM 70 (385)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~ 70 (385)
++|.+.+.++.|+++|+++.+.+..++.+++ ++++|+++|++|++||.++||++|.+|++ .|++++
T Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~---~g~~~~ 170 (857)
T PLN03077 94 RLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK---AGYFDE 170 (857)
T ss_pred HHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHh---CCCHHH
Confidence 3466667777777777777777766665544 78999999999999999999999999888 899999
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc----cccc---------cchHHHHHHhcCCCC
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL----FCWK---------FGIIRLLIMFQKMPE 137 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~---------~~~~~a~~~~~~~~~ 137 (385)
|.++|++|.+.|+.||..||+++|++|++.++++.+.+++..|.+.|. .+++ |+++.|.++|++|+.
T Consensus 171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~ 250 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999976654 2333 999999999999999
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC----------------------------------------------------------------------
Q 040338 218 DMYLKCGCNG---------------------------------------------------------------------- 227 (385)
Q Consensus 218 ~~~~~~g~~~---------------------------------------------------------------------- 227 (385)
++|++.|+.+
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 9999999766
Q ss_pred ---------CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH------------
Q 040338 228 ---------IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------ 286 (385)
Q Consensus 228 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~------------ 286 (385)
..|+..+|++||++|+++|++++|.++|++|.++|+.+|+++|.+|++.|+.++|+.+|
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~ 490 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSV 490 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHh
Confidence 33445555555555555556666666666665556666666666666666666666555
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc---hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 363 (385)
+|+.++.+|++.|+++.+.+++..+.+.|. ..++++||++|+++|++++|.++|+++ .||..+|+++|.+|+++|
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHG 568 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcC
Confidence 555566555555555555555555555555 555667777777777777777777777 567777777777777777
Q ss_pred ChHHHHHHHHHHHhccccCC
Q 040338 364 NTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~~~ 383 (385)
+.++|.++|++|.+.|+.|.
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCC
Confidence 77777777777777777664
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-54 Score=421.33 Aligned_cols=379 Identities=15% Similarity=0.138 Sum_probs=338.7
Q ss_pred CcccccCCChHHHHHHHHHHHHcccchhhHHh-----------hhhhHHHHHhhhC----CCChhhHHHHHHHHHhhhcc
Q 040338 1 MKACGSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIG----PRYLFTYNTMINGGVRCLCV 65 (385)
Q Consensus 1 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~ 65 (385)
|++|++.|+++.|+.+|++|.+.|+.|+.+++ ++++|.++|++|. .||..+|++||.+|++ .
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k---~ 520 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR---A 520 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---C
Confidence 46789999999999999999999999998888 9999999999998 6899999999999888 8
Q ss_pred CChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccC------CCccccc---------cchHHHHH
Q 040338 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN------PSLFCWK---------FGIIRLLI 130 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------~~~~~~~---------~~~~~a~~ 130 (385)
|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. ++..+++ |++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999964 3444444 99999999
Q ss_pred HhcCCC----CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 131 MFQKMP----ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 131 ~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
+|++|. +|+..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999885 5778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCCC-------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc----CChhhHHHH
Q 040338 207 SLDVFVGSGLIDMYLKCGCNG-------------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR----RNMISWMVL 269 (385)
Q Consensus 207 ~~~~~~~~~li~~~~~~g~~~-------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~l 269 (385)
.|+..+|++||.+|++.|+.+ ..||..+|++||.+|++.|++++|.++|++|.+ ||..+|+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999766 689999999999999999999999999999974 799999999
Q ss_pred HHHHHhcCCCCchHHHH-------------HHHHHHHHhcc-----------------------cCChhhHHHHHHHHHh
Q 040338 270 ISAFSQAGVLEKPRFFF-------------FFVSLLSGCSH-----------------------SGPVTKGKHYFTAMAK 313 (385)
Q Consensus 270 i~~~~~~g~~~~a~~~~-------------~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 313 (385)
+.+|++.|++++|.+++ +|+.++..|.+ .+..+.|..+|++|.+
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999998 78888876542 1223678999999999
Q ss_pred ccc---hhhHHHHHHHHHccCCHHHHHHHHHhCCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCCC
Q 040338 314 FTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK---PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384 (385)
Q Consensus 314 ~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 384 (385)
.|. ..+|+.++.++++.+..+.+..++++|... |+..+|+++|.++.+. .++|..++++|.+.|+.|..
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 998 778999998888999999999999988764 7788999999998432 36899999999999998863
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.3e-53 Score=408.18 Aligned_cols=371 Identities=22% Similarity=0.257 Sum_probs=326.1
Q ss_pred cccccCCChHHHHHHHHHHHHcc-cchhhHHh-----------hhhhHHHHHhhhC----CCChhhHHHHHHHHHhhhcc
Q 040338 2 KACGSLKSLPIARKIHAQLISTC-LISSIFLQ-----------LIDDDYRVFCDIG----PRYLFTYNTMINGGVRCLCV 65 (385)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~-----------~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~ 65 (385)
.++.+.|++++|..+|++|...+ +.|+.+++ +++.|..++..|. .||+.+||.+|..|++ .
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k---~ 171 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK---C 171 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc---C
Confidence 35667788888888888888764 56666665 6777777887775 5788888888888777 6
Q ss_pred CChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCcc----ccc---------cchHHHHHHh
Q 040338 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF----CWK---------FGIIRLLIMF 132 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~---------~~~~~a~~~~ 132 (385)
|+++.|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.+.. ++. |..+.+.+++
T Consensus 172 g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 172 GMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 88888888888885 468888888888888888888888888888665442 222 5666666665
Q ss_pred cCC----CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCC
Q 040338 133 QKM----PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208 (385)
Q Consensus 133 ~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 208 (385)
..+ ..||..+||+||.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.|
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 444 35889999999999999999999999999994 5799999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCC-------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHh
Q 040338 209 DVFVGSGLIDMYLKCGCNG-------------IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275 (385)
Q Consensus 209 ~~~~~~~li~~~~~~g~~~-------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 275 (385)
|..+|++++.+|++.|+.+ ..||..+|++||++|+++|++++|.++|++|.+||+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 9999999999999999877 799999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHH-------------HHHHHHHHhcccCChhhHHHHHHHHHhc-cc---hhhHHHHHHHHHccCCHHHHHH
Q 040338 276 AGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKF-TY---TCYFVCMVDLLGLSGLLGEAKK 338 (385)
Q Consensus 276 ~g~~~~a~~~~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~---~~~~~~li~~~~~~g~~~~A~~ 338 (385)
+|+.++|+++| ||+.++.+|++.|++++|.++|+.|.+. +. ..+|+.++++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999 9999999999999999999999999874 44 6799999999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 339 LIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 339 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
++++|..+|+..+|++|+.+|..+|+.+.|..+++++.+.+|.+.
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 999999889999999999999999999999999999998888654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=2e-22 Score=202.60 Aligned_cols=371 Identities=11% Similarity=-0.014 Sum_probs=223.7
Q ss_pred cccCCChHHHHHHHHHHHHcccch-hhHHh---------hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHH
Q 040338 4 CGSLKSLPIARKIHAQLISTCLIS-SIFLQ---------LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKM 70 (385)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---------~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~ 70 (385)
+.+.|+++.|..+++.+....... ..+.. ++++|...|+++. +.+...+..+...+.. .|++++
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~---~g~~~~ 517 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ---EGNPDD 517 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---CCCHHH
Confidence 456677777877777777654321 11111 7777777777654 2234445555555544 677777
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCcccc------------ccchHHHHHHhcCCC--
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW------------KFGIIRLLIMFQKMP-- 136 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------------~~~~~~a~~~~~~~~-- 136 (385)
|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++.+.+.... .|+.++|..++.++.
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 777777777654 33566677777777777777777777777644332111 166677776666653
Q ss_pred -CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHH
Q 040338 137 -ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215 (385)
Q Consensus 137 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 215 (385)
+.+...|..+..++.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+++.+.+.. +.+..++..
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3455667777777777777777777777776542 2245556666667777777777777777776653 234556666
Q ss_pred HHHHHHhcCCCC------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCc
Q 040338 216 LIDMYLKCGCNG------------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEK 281 (385)
Q Consensus 216 li~~~~~~g~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~ 281 (385)
+...+...|+.+ .+.+...+..+...+...|++++|...|+.+.+ |+..++..++.++.+.|++++
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHH
Confidence 666666666554 334455566666666666666666666666543 444555556666666666666
Q ss_pred hHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-
Q 040338 282 PRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK- 346 (385)
Q Consensus 282 a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 346 (385)
|.+.+ .+..+...|...|+.++|.+.|+++.+..+ +..++.+...+...|+ ++|+.++++....
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 66555 555555666666666666666666665554 4455555555555555 5555555554432
Q ss_pred C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 347 P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 347 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
| +..++..+...+...|++++|...++++++.+|.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 2 2334445555555555555555555555555543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=3.1e-22 Score=201.15 Aligned_cols=365 Identities=13% Similarity=0.003 Sum_probs=193.9
Q ss_pred ccCCChHHHHHHHHHHHHcccchhhHHh----------hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHHH
Q 040338 5 GSLKSLPIARKIHAQLISTCLISSIFLQ----------LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKMA 71 (385)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~a 71 (385)
...|+++.|...++++.+.......... ++++|...|+++. +.+..++..+...+.. .|+.++|
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A 552 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR---TGNEEEA 552 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH---cCCHHHH
Confidence 3445566666666655543322111111 5555666655543 2234445555555444 5566666
Q ss_pred HHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCcc---ccc---------cchHHHHHHhcCCC---
Q 040338 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLF---CWK---------FGIIRLLIMFQKMP--- 136 (385)
Q Consensus 72 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~---------~~~~~a~~~~~~~~--- 136 (385)
..+++++.+.+ +.+...+..++..|.+.|++++|..+++++.+.... .|. |++++|...|.++.
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666655543 234445555556666666666666666555432221 111 55555555555442
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 216 (385)
+.+...+..+...+.+.|++++|..+|+++.+. .+.+..++..+...+...|++++|.++++.+.+.+ +.+...+..+
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 709 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELE 709 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHH
Confidence 223445555555566666666666666655543 12234555555555666666666666666655543 2344455555
Q ss_pred HHHHHhcCCCC-----------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCch
Q 040338 217 IDMYLKCGCNG-----------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKP 282 (385)
Q Consensus 217 i~~~~~~g~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a 282 (385)
...+.+.|+++ ..|+..++..+...+.+.|++++|.+.++.+.+ .+...+..+...|...|+.++|
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 55555555444 334445555555666666666666666555543 2444555555556666666666
Q ss_pred HHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C
Q 040338 283 RFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P 347 (385)
Q Consensus 283 ~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p 347 (385)
.+.+ ++..+...+...|+ .+|...++++....+ +..+..+...+...|++++|.+.|+++.+. |
T Consensus 790 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 790 IKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5555 45555555555555 556666665555444 444455555555666666666666655543 2
Q ss_pred -CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 040338 348 -TCVIWGALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 348 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
+..++..+..++.+.|+.++|.+++++|+
T Consensus 869 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 869 EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555556666666666666666665554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=9.9e-20 Score=165.60 Aligned_cols=281 Identities=12% Similarity=0.035 Sum_probs=218.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCC---Ccc
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER---DLV 141 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~---~~~ 141 (385)
.|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+..... .+ ...
T Consensus 48 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~------------------~~~~~~~~ 108 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD------------------LTREQRLL 108 (389)
T ss_pred cCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC------------------CCHHHHHH
Confidence 688888999998888864 33566788888888888889888888888765331 11 124
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 221 (385)
++..+...|.+.|++++|..+|+++.+. -+++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------- 178 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------- 178 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------
Confidence 6777888888888888888888888764 234567788888888888888888888888887654332210
Q ss_pred hcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------
Q 040338 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------ 286 (385)
Q Consensus 222 ~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------ 286 (385)
....+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|++.+
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 111235566677778888888888888765 3 3456777788888888888888887
Q ss_pred -HHHHHHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHh--
Q 040338 287 -FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALLGACCS-- 361 (385)
Q Consensus 287 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~-- 361 (385)
++..+..+|...|++++|...++++.+..+ ...+..++..+.+.|++++|.++++++.+. |+..++..++..+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 467788899999999999999999988777 555688999999999999999999988765 999999998888775
Q ss_pred -cCChHHHHHHHHHHHhccccCC
Q 040338 362 -HYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 362 -~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
.|+.+++..+++++.+.++.+.
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCC
Confidence 5589999999999998665543
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=6.4e-18 Score=153.72 Aligned_cols=268 Identities=13% Similarity=0.070 Sum_probs=216.8
Q ss_pred hhhhHHHHHhhhC--CC-ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCC---chHHHhHHHHHHhcCChhHH
Q 040338 33 LIDDDYRVFCDIG--PR-YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD---ESIAKSSIDMHVKCGAVDYA 106 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a 106 (385)
++++|...|+++. .| +..++..+...+.. .|++++|..+++.+.+.+..++ ...+..+...|.+.|++++|
T Consensus 50 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPETVELHLALGNLFRR---RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 8889999999887 33 34567777777666 8999999999999987542221 25678889999999999999
Q ss_pred HHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----hhHHHHH
Q 040338 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS----MLYATAF 182 (385)
Q Consensus 107 ~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll 182 (385)
..+|+++.+.+ +++..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+.
T Consensus 127 ~~~~~~~l~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 127 EELFLQLVDEG-------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHcCC-------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999987654 467789999999999999999999999999886543322 2355677
Q ss_pred HHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--
Q 040338 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-- 260 (385)
Q Consensus 183 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 260 (385)
..+.+.|++++|.+.++++.+... + +...+..+...+.+.|++++|.++|+++.+
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p--~---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADP--Q---------------------CVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCc--C---------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 788899999999999999987642 2 123445677788888899999999999885
Q ss_pred CC--hhhHHHHHHHHHhcCCCCchHHHH-----------HHHHHHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHH
Q 040338 261 RN--MISWMVLISAFSQAGVLEKPRFFF-----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDL 326 (385)
Q Consensus 261 ~~--~~~~~~li~~~~~~g~~~~a~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~ 326 (385)
|+ ..+++.++.+|...|++++|...+ .+..+...+.+.|++++|..+++++.+..+ ...+..++..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 33 346788899999999999999988 568889999999999999999999888877 6677777777
Q ss_pred HHc---cCCHHHHHHHHHhCCC
Q 040338 327 LGL---SGLLGEAKKLIDEMPS 345 (385)
Q Consensus 327 ~~~---~g~~~~A~~~~~~m~~ 345 (385)
+.. .|+.+++..++++|.+
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 664 5689999999998875
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.2e-16 Score=153.00 Aligned_cols=303 Identities=10% Similarity=-0.072 Sum_probs=223.1
Q ss_pred hhhhHHHHHhhhC--CCC-hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIG--PRY-LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
++++|..+++... .|+ ......+..+... .|+++.|...++.+.+.. +.+...+..+...+.+.|+.++|...
T Consensus 57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~---~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA---SSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred CcchhHHHhHHHHHhCCCchhHHHHHhhhHhh---cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777776654 333 2333334444333 799999999999998864 33567788888888889999999999
Q ss_pred HHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcc
Q 040338 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189 (385)
Q Consensus 110 ~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 189 (385)
|++..+.. +.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|
T Consensus 133 l~~Al~l~-------------------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g 191 (656)
T PRK15174 133 AEQAWLAF-------------------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKS 191 (656)
T ss_pred HHHHHHhC-------------------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcC
Confidence 98876654 3566778888888999999999999998886653222 2233233 3467788
Q ss_pred CccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhH
Q 040338 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISW 266 (385)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~ 266 (385)
++++|...++.+++....++... +..+...+.+.|++++|+..++...+ | +...+
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~----------------------~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~ 249 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQES----------------------AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR 249 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhH----------------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999998888877643222222 23345566677888899888888765 2 55677
Q ss_pred HHHHHHHHhcCCCCc----hHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHH
Q 040338 267 MVLISAFSQAGVLEK----PRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLG 328 (385)
Q Consensus 267 ~~li~~~~~~g~~~~----a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~ 328 (385)
..+...+...|++++ |+..+ .+..+...+...|++++|...+++.....+ ......+...|.
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 778888888888886 56666 778888888899999999999999888777 666777888899
Q ss_pred ccCCHHHHHHHHHhCCCC-CCcch-HHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 329 LSGLLGEAKKLIDEMPSK-PTCVI-WGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~-p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+.|++++|...|+++... |+... +..+..++...|+.++|...+++..+..|..
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 999999999999888764 66544 3345677888999999999999988877653
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=9e-17 Score=142.48 Aligned_cols=306 Identities=13% Similarity=0.084 Sum_probs=210.1
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc--cccc----
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL--FCWK---- 122 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~---- 122 (385)
..+|..+-+.+-. +|++++|+.+++.+++.. +-.+..|..+..++...|+.+.|.+.|.+..+.++ ++..
T Consensus 116 ae~ysn~aN~~ke---rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKE---RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHH---hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 4466666666555 777888888887777753 22566777777777777777777777766655443 1111
Q ss_pred ----------------------------------------cchHHHHHHhcCCCCCC---cchHHHHHHHHHhCCCchHH
Q 040338 123 ----------------------------------------FGIIRLLIMFQKMPERD---LVSWNTMISILTRHGFGFET 159 (385)
Q Consensus 123 ----------------------------------------~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a 159 (385)
|++..|+..|.+-.+.| ...|-.|-..|...+.+++|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 55555555555543322 23455555555555556666
Q ss_pred HHHHHHHHHCCCCCC-HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHH
Q 040338 160 LCTFIELWNHGFGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKAL 238 (385)
Q Consensus 160 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~l 238 (385)
+..|.+... ..|+ ...|..+...|...|+++.|+..+++.+...+ .-...|+.|
T Consensus 272 vs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-----------------------~F~~Ay~Nl 326 (966)
T KOG4626|consen 272 VSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-----------------------NFPDAYNNL 326 (966)
T ss_pred HHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-----------------------CchHHHhHH
Confidence 655555543 2443 34455555555555666666666655554322 123567888
Q ss_pred HHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhh
Q 040338 239 VTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTK 303 (385)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~ 303 (385)
..++-..|++.+|.+.|++... | ...+.+.|...|...|.+++|..+| ..+.+...|...|++++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHH
Confidence 8888888888888888887765 3 4567788888888888888888887 77888888888888888
Q ss_pred HHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 040338 304 GKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KPT-CVIWGALLGACCSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 304 a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 379 (385)
|+..+++..+..+ ...|+-+...|-..|+.+.|.+.+.+... +|. ...++.|...|-..|+..+|++-+++.++..
T Consensus 407 Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 407 AIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 8888888888777 78888888888888888888888877765 354 3467888888888888888888888888877
Q ss_pred ccCC
Q 040338 380 VKVF 383 (385)
Q Consensus 380 ~~~~ 383 (385)
|.-+
T Consensus 487 PDfp 490 (966)
T KOG4626|consen 487 PDFP 490 (966)
T ss_pred CCCc
Confidence 7643
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=1.4e-15 Score=155.16 Aligned_cols=369 Identities=10% Similarity=-0.048 Sum_probs=265.0
Q ss_pred cccCCChHHHHHHHHHHHHcccc-hhhHHh---------hhhhHHHHHhhhC--CCCh---hhHHHHHH---------HH
Q 040338 4 CGSLKSLPIARKIHAQLISTCLI-SSIFLQ---------LIDDDYRVFCDIG--PRYL---FTYNTMIN---------GG 59 (385)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~---------~~~~A~~~~~~~~--~~~~---~~~~~li~---------~~ 59 (385)
+...|++++|...++++++.... +..... ++++|...|++.. .|+. ..|..++. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 34579999999999999986543 222222 8999999998765 2332 22333221 11
Q ss_pred HhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCcccc-----------ccchHHH
Q 040338 60 VRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW-----------KFGIIRL 128 (385)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----------~~~~~~a 128 (385)
..+...|++++|...+++..+.. +.+...+..+..++...|++++|++.|++..+.+.... .+..++|
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 11234899999999999999874 34567788889999999999999999999876443111 1556777
Q ss_pred HHHhcCCCCCC------------cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchh
Q 040338 129 LIMFQKMPERD------------LVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGP 195 (385)
Q Consensus 129 ~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~ 195 (385)
+..+..++... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|.
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 77777665321 223455667788899999999999999875 45 4566778888999999999999
Q ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC-------------CCchh---------hHHHHHHHHHHcCCChhHHHH
Q 040338 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG-------------IESSI---------QIGKALVTMYAEGGSTQKADL 253 (385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-------------~~~~~---------~~~~~li~~~~~~g~~~~A~~ 253 (385)
..++.+.+..+. +...+..+...+...++.+ ..++. ..+..+...+...|+.++|+.
T Consensus 516 ~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 999999876543 3333333333333334322 11111 112345667888899999999
Q ss_pred HHHhcccCChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhh
Q 040338 254 AFELMSRRNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCY 319 (385)
Q Consensus 254 ~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~ 319 (385)
+++.- ..+...+..+...+.+.|++++|++.+ .+..+...+...|+.++|.+.++...+..+ ...
T Consensus 595 ~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 595 LLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred HHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHH
Confidence 98832 235566777888899999999999888 788888889999999999999998887665 566
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhCCCC-CC-------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 320 FVCMVDLLGLSGLLGEAKKLIDEMPSK-PT-------CVIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~-p~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
...+..++...|++++|.++++.+... |+ ...+..+...+...|++++|+..|++...
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677788888999999999999988763 21 23566677888999999999999998865
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.6e-15 Score=126.99 Aligned_cols=350 Identities=13% Similarity=0.024 Sum_probs=242.7
Q ss_pred ccCCChHHHHHHHHHHHHcccchhhHHh--------------------------------------hhhhHHHHHhhhCC
Q 040338 5 GSLKSLPIARKIHAQLISTCLISSIFLQ--------------------------------------LIDDDYRVFCDIGP 46 (385)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~A~~~~~~~~~ 46 (385)
..+|.+..+.-+.++|.+.|..-+.-+. +-+-|.-+|+..|
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P- 204 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP- 204 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-
Confidence 3467778888888888888754443322 3344454555444
Q ss_pred CChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchH
Q 040338 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126 (385)
Q Consensus 47 ~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 126 (385)
.+..||.+||.|+|+ --..++|.+++++-.+...+.+..+||.+|.+-.-.-+ .+++.+|.+..+
T Consensus 205 KT~et~s~mI~Gl~K---~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm-------- 269 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCK---FSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM-------- 269 (625)
T ss_pred CCchhHHHHHHHHHH---HHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc--------
Confidence 456789999999999 58899999999999988889999999999976544322 678888887777
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHHhCCCchH----HHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccc-hhhHHHHH
Q 040338 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFE----TLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW-GPHLHSRV 201 (385)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~ 201 (385)
.||..|+|+++++..+.|+++. |++++.+|++.|+.|...+|..+|..+.+-++..+ +..++.++
T Consensus 270 ----------~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 270 ----------TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred ----------CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 8999999999999999998875 56889999999999999999999999998887644 55555555
Q ss_pred HHh----CCC----CchHHHHHHHHHHHhcCCCC-----------------CCch---hhHHHHHHHHHHcCCChhHHHH
Q 040338 202 VHM----EPS----LDVFVGSGLIDMYLKCGCNG-----------------IESS---IQIGKALVTMYAEGGSTQKADL 253 (385)
Q Consensus 202 ~~~----~~~----~~~~~~~~li~~~~~~g~~~-----------------~~~~---~~~~~~li~~~~~~g~~~~A~~ 253 (385)
... .++ .|...|.+.|+.|.+..+.. +.|+ ..-|..+....+.....+.-..
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 233 25666777777776665444 3333 2345566677777777888888
Q ss_pred HHHhccc----CChhhHHHHHHHHHhcCCCCchHHHH--------HHHH-----HHHHhcccC-Ch---h----------
Q 040338 254 AFELMSR----RNMISWMVLISAFSQAGVLEKPRFFF--------FFVS-----LLSGCSHSG-PV---T---------- 302 (385)
Q Consensus 254 ~~~~m~~----~~~~~~~~li~~~~~~g~~~~a~~~~--------~~~~-----l~~~~~~~~-~~---~---------- 302 (385)
.|+.|.- |+..+...++.+.--.|+++-.-++| +++. ++...++.. .. +
T Consensus 420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAK 499 (625)
T ss_pred HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 8888764 56677777777777777777777777 2221 111222211 11 0
Q ss_pred hHHHH-------HHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCC----CCcchHH---HHHHHHHhcCChHH
Q 040338 303 KGKHY-------FTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----PTCVIWG---ALLGACCSHYNTKL 367 (385)
Q Consensus 303 ~a~~~-------~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~---~li~~~~~~g~~~~ 367 (385)
-|..+ -.++.+... ....+...-.+.+.|+.++|.++|.-+..+ |-....+ -++.+-...++...
T Consensus 500 ~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 500 CAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 01111 112222222 566677777889999999999999887543 3333444 56666677788889
Q ss_pred HHHHHHHHHhccc
Q 040338 368 AELVMRNLLQLDV 380 (385)
Q Consensus 368 a~~~~~~~~~~~~ 380 (385)
|...++-|...+.
T Consensus 580 A~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 580 AIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHcCc
Confidence 9988888865543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.74 E-value=3.5e-15 Score=143.20 Aligned_cols=342 Identities=10% Similarity=-0.018 Sum_probs=240.1
Q ss_pred hhhhHHHHHhhhC--CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHH
Q 040338 33 LIDDDYRVFCDIG--PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 110 (385)
++++|...|++.. .|+...|..+-.++.. .|++++|++.++...+.. +.+...|..+..+|...|++++|+.-|
T Consensus 142 ~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~---l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 142 DFNKAIKLYSKAIECKPDPVYYSNRAACHNA---LGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHH---hCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888765 6777777777777666 899999999999988764 335678888889999999999998766
Q ss_pred HhccCCCccccc------------cchHHHHHHhcCCCCCCcchHHHH------------------------------HH
Q 040338 111 LRMLNPSLFCWK------------FGIIRLLIMFQKMPERDLVSWNTM------------------------------IS 148 (385)
Q Consensus 111 ~~m~~~~~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~l------------------------------i~ 148 (385)
......+.+... .....+...+..-+ ++...+..+ +.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 554322211000 00011111111111 110000000 00
Q ss_pred HH------HhCCCchHHHHHHHHHHHCC-CCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHH
Q 040338 149 IL------TRHGFGFETLCTFIELWNHG-FGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220 (385)
Q Consensus 149 ~~------~~~~~~~~a~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 220 (385)
.. ...+++++|.+.|++..+.+ ..| +...+..+...+...|++++|+..++..+...+ .....|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHH
Confidence 00 12356778888888877654 334 345566667777778888888888888776532 2344666666667
Q ss_pred HhcCCCC------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHH
Q 040338 221 LKCGCNG------------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFF 285 (385)
Q Consensus 221 ~~~g~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 285 (385)
...|+++ .+.+..+|..+...+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..
T Consensus 376 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7766655 344567888899999999999999999998876 3 556777888899999999999999
Q ss_pred H------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--h-------hhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 286 F------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--T-------CYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 286 ~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
+ .++.+...+...|++++|...|++.....+ . ..++.....+...|++++|.+++++..
T Consensus 456 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 456 FRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8 788899999999999999999999887654 1 112222333445799999999999875
Q ss_pred CC-CC-cchHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 040338 345 SK-PT-CVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 345 ~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
.. |+ ...+..+...+...|++++|+..|++..+...
T Consensus 536 ~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 53 44 44688899999999999999999999876543
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=7.9e-15 Score=124.93 Aligned_cols=303 Identities=14% Similarity=0.097 Sum_probs=235.2
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh--cCChhHH-HHHHHhccCCC---ccccc
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK--CGAVDYA-ESAFLRMLNPS---LFCWK 122 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~a-~~~~~~m~~~~---~~~~~ 122 (385)
+.+=|.|+...+ .|.++.+.-+++.|.+.|++.+..+--.|++.-+- ..++--| ++-|-.|.+.+ ..+|.
T Consensus 116 V~~E~nL~kmIS----~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK 191 (625)
T KOG4422|consen 116 VETENNLLKMIS----SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWK 191 (625)
T ss_pred hcchhHHHHHHh----hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccc
Confidence 445677776544 49999999999999999999888887777764443 3333322 45566676544 34565
Q ss_pred -cchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHH
Q 040338 123 -FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201 (385)
Q Consensus 123 -~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 201 (385)
|++.+ ++-+..+.+..+|.++|.++|+.-..+.|.++|.+-.....+.+..+||.+|.+-+- ....++..+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EM 264 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEM 264 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHH
Confidence 66654 555555677789999999999999999999999999988889999999999887543 2337899999
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc----CChhhHHHHHHHHHhcC
Q 040338 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR----RNMISWMVLISAFSQAG 277 (385)
Q Consensus 202 ~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g 277 (385)
......||..|+|+++.+..+.|++.. ....|.+++.+|++ |...+|..+|..+++.+
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~------------------ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFED------------------ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHH------------------HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 999998888888666666555552210 12345667777775 78889999999999988
Q ss_pred CCCchHHHH----------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc----------hhhHHHHHH
Q 040338 278 VLEKPRFFF----------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----------TCYFVCMVD 325 (385)
Q Consensus 278 ~~~~a~~~~----------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~li~ 325 (385)
+..+....| .|...++.|.+..+.+.|.++..-...... ...|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 887755555 788889999999999999998876654332 455677888
Q ss_pred HHHccCCHHHHHHHHHhCCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 040338 326 LLGLSGLLGEAKKLIDEMPSK---PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
..|+....+.-.+.|+.|..+ |+..+-..++++....|.++-.-+++.+++..|.
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 999999999999999999986 8999999999999999999999999999988773
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=1.6e-14 Score=138.55 Aligned_cols=296 Identities=11% Similarity=-0.045 Sum_probs=233.3
Q ss_pred cccCCChHHHHHHHHHHHHcccchhhHHh----------hhhhHHHHHhhhC--CC-ChhhHHHHHHHHHhhhccCChHH
Q 040338 4 CGSLKSLPIARKIHAQLISTCLISSIFLQ----------LIDDDYRVFCDIG--PR-YLFTYNTMINGGVRCLCVGNIKM 70 (385)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~~~~ 70 (385)
+-+.|+++.|+.+.+.++.....+.-..+ ++++|...|+++. .| +...|..+...+.. .|++++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~---~g~~~~ 128 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK---SKQYAT 128 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---cCCHHH
Confidence 45789999999999999988766654444 9999999999886 34 44566666666556 899999
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHH
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 150 (385)
|...++...+.. +.+...+..+..++...|+.++|...++++....+ .+...+..+ ..+
T Consensus 129 Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-------------------~~~~a~~~~-~~l 187 (656)
T PRK15174 129 VADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-------------------PRGDMIATC-LSF 187 (656)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-------------------CCHHHHHHH-HHH
Confidence 999999999863 34577888999999999999999999988755442 233344333 347
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCc
Q 040338 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230 (385)
Q Consensus 151 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~ 230 (385)
.+.|++++|...++.+.+....++...+..+..++.+.|++++|+..++...+..+. +
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~--------------------- 245 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-G--------------------- 245 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C---------------------
Confidence 889999999999999877643345555566677888999999999999999886532 2
Q ss_pred hhhHHHHHHHHHHcCCChhH----HHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHH
Q 040338 231 SIQIGKALVTMYAEGGSTQK----ADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSL 291 (385)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l 291 (385)
...+..+...+...|++++ |+..|++..+ | +...+..+...+...|++++|+..+ .+..+
T Consensus 246 -~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~L 324 (656)
T PRK15174 246 -AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMY 324 (656)
T ss_pred -HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2334566677777778875 7888888765 4 5568888899999999999999888 67778
Q ss_pred HHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (385)
..++...|++++|...++.+....+ ...+..+..++...|+.++|.+.|++..+.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999998777 344445677889999999999999988663
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.71 E-value=3.3e-14 Score=145.30 Aligned_cols=335 Identities=8% Similarity=-0.059 Sum_probs=250.1
Q ss_pred cccCCChHHHHHHHHHHHHcccchhh---H------------H-------h--hhhhHHHHHhhhC--C-CChhhHHHHH
Q 040338 4 CGSLKSLPIARKIHAQLISTCLISSI---F------------L-------Q--LIDDDYRVFCDIG--P-RYLFTYNTMI 56 (385)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~------------~-------~--~~~~A~~~~~~~~--~-~~~~~~~~li 56 (385)
+.+.|++++|+..++++.+....... + . . ++++|...|++.. . .+...+..+-
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg 392 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLG 392 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45789999999999999986543211 0 0 0 8899999999876 2 3445566666
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc------------------
Q 040338 57 NGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL------------------ 118 (385)
Q Consensus 57 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------------ 118 (385)
..+.. .|++++|++.|++..+.. +.+...+..+...|. .++.++|..+++.+.....
T Consensus 393 ~~~~~---~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 467 (1157)
T PRK11447 393 DVAMA---RKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQ 467 (1157)
T ss_pred HHHHH---CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 66656 899999999999999864 335566777777774 4678999988877643211
Q ss_pred ---cccccchHHHHHHhcCCC--CC-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCc
Q 040338 119 ---FCWKFGIIRLLIMFQKMP--ER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDL 191 (385)
Q Consensus 119 ---~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~ 191 (385)
....|+.++|+..|++.. .| +...+..+...|.+.|++++|...|++..+. .| +...+..+...+...++.
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCH
Confidence 111288899999888764 23 4567778889999999999999999999874 34 344444444556778999
Q ss_pred cchhhHHHHHHHhCCCCchH---------HHHHHHHHHHhcCCCC--------CCchhhHHHHHHHHHHcCCChhHHHHH
Q 040338 192 EWGPHLHSRVVHMEPSLDVF---------VGSGLIDMYLKCGCNG--------IESSIQIGKALVTMYAEGGSTQKADLA 254 (385)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~ 254 (385)
++|...++.+......++.. .+..+...+...|+.+ .+.+...+..+...+.+.|+.++|+..
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 99999888765433222211 1223345555666544 445666778899999999999999999
Q ss_pred HHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--h
Q 040338 255 FELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--T 317 (385)
Q Consensus 255 ~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 317 (385)
|++..+ | +...+..++..|...|++++|++.+ .+..+..++...|++++|.++++.+..... .
T Consensus 626 y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 626 YQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 998876 3 6788899999999999999999998 566677888899999999999999887644 1
Q ss_pred ------hhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 318 ------CYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 318 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
..+..+...+...|++++|+..|+....
T Consensus 706 ~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 706 PSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455567888999999999999998764
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.71 E-value=2.1e-15 Score=133.97 Aligned_cols=330 Identities=12% Similarity=0.037 Sum_probs=236.1
Q ss_pred cCCChHHHHHHHHHHHHcccchhhHHh------------hhhhHHHHHhhhC--CCChhhHHHHHHHHHhhhccCChHHH
Q 040338 6 SLKSLPIARKIHAQLISTCLISSIFLQ------------LIDDDYRVFCDIG--PRYLFTYNTMINGGVRCLCVGNIKMA 71 (385)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~a 71 (385)
..|+++.|......+++.. |...-. +.+.|...|.+.. .|+.....+-+..+.+. .|++.+|
T Consensus 128 erg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka--~Grl~ea 203 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA--EGRLEEA 203 (966)
T ss_pred HhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh--hcccchh
Confidence 4567777777777777642 211111 6666666665544 33333322222222221 5666666
Q ss_pred HHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccc------------cchHHHHHHhcC---CC
Q 040338 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK------------FGIIRLLIMFQK---MP 136 (385)
Q Consensus 72 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------------~~~~~a~~~~~~---~~ 136 (385)
...+.+.++... --...|+.|...+-..|++-.|+.-|++..+.++.--. +.+++|..-+.+ +.
T Consensus 204 ~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 204 KACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 666666665421 12345666666666666666666666666554431100 333333333222 12
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 215 (385)
+....+|..+...|-..|..+-|++.|++..+ +.|+ ...|+.|.+++-..|++.+|.+.+...+...+
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p--------- 351 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP--------- 351 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC---------
Confidence 34566777888889999999999999999987 4665 67899999999999999999999999988643
Q ss_pred HHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CC-hhhHHHHHHHHHhcCCCCchHHHH------
Q 040338 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RN-MISWMVLISAFSQAGVLEKPRFFF------ 286 (385)
Q Consensus 216 li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~a~~~~------ 286 (385)
....+.+.|...|...|++++|..+|....+ |+ ...++.|...|-++|++++|+..+
T Consensus 352 --------------~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 352 --------------NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred --------------ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 2334567888999999999999999998876 43 367889999999999999999888
Q ss_pred ------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CCCc-chHHHHH
Q 040338 287 ------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KPTC-VIWGALL 356 (385)
Q Consensus 287 ------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~-~~~~~li 356 (385)
+|+.+...|...|+++.|.+.+.+....++ ...++-|...|-.+|++.+|+.-|++... +||. ..|..++
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 899999999999999999999999999998 88899999999999999999999998876 4664 3566777
Q ss_pred HHHHhcCCh
Q 040338 357 GACCSHYNT 365 (385)
Q Consensus 357 ~~~~~~g~~ 365 (385)
.+..--.++
T Consensus 498 h~lq~vcdw 506 (966)
T KOG4626|consen 498 HCLQIVCDW 506 (966)
T ss_pred HHHHHHhcc
Confidence 665444444
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=6.2e-14 Score=137.20 Aligned_cols=353 Identities=8% Similarity=-0.112 Sum_probs=235.4
Q ss_pred cccCCChHHHHHHHHHHHHcc-cchhhHHh---------hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHH
Q 040338 4 CGSLKSLPIARKIHAQLISTC-LISSIFLQ---------LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKM 70 (385)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~---------~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~ 70 (385)
....|+.++|..++....... ........ ++++|..+|++.. +.+...+..+...+.. .|++++
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~---~g~~~e 101 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD---AGQYDE 101 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHH
Confidence 456799999999999988633 33211111 8999999999854 3345556666666666 899999
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccc------------cchHHHHHHhcCCCC-
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK------------FGIIRLLIMFQKMPE- 137 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------------~~~~~a~~~~~~~~~- 137 (385)
|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+..+-... +..+.|+..++....
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 999999998873 34556 888888999999999999999998765531111 444555555554433
Q ss_pred CCc------chHHHHHHHHH-----hCCCc---hHHHHHHHHHHHC-CCCCCHh-hHH----HHHHHhcCccCccchhhH
Q 040338 138 RDL------VSWNTMISILT-----RHGFG---FETLCTFIELWNH-GFGLSSM-LYA----TAFSARASVYDLEWGPHL 197 (385)
Q Consensus 138 ~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~ 197 (385)
|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|+.++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 110 01111121111 11222 4566666666543 1222211 111 112233455666777777
Q ss_pred HHHHHHhCCC-CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCC-------hhhHHHH
Q 040338 198 HSRVVHMEPS-LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN-------MISWMVL 269 (385)
Q Consensus 198 ~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~l 269 (385)
|+.+.+.+.. |+.. . ..+...|...|++++|+..|+.+.+.+ ......+
T Consensus 260 ~~~ll~~~~~~P~~a---------------------~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 260 YQRLKAEGQIIPPWA---------------------Q--RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHhhccCCCCCHHH---------------------H--HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 7776665431 2211 1 113556777788888888888775422 1234556
Q ss_pred HHHHHhcCCCCchHHHH---------------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhH
Q 040338 270 ISAFSQAGVLEKPRFFF---------------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYF 320 (385)
Q Consensus 270 i~~~~~~g~~~~a~~~~---------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~ 320 (385)
..++...|++++|.+.+ .+..+...+...|+.++|+++++++....+ ...+
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~ 396 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR 396 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 66777888888888776 123456677889999999999999988877 8888
Q ss_pred HHHHHHHHccCCHHHHHHHHHhCCCC-CC-cchHHHHHHHHHhcCChHHHHHHHHHHHhccccCCC
Q 040338 321 VCMVDLLGLSGLLGEAKKLIDEMPSK-PT-CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384 (385)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 384 (385)
..+...+...|++++|++.+++.... |+ ...+...+..+...|++++|..+++++++..|.++.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 88999999999999999999998874 65 456667777899999999999999999998887653
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.66 E-value=2e-13 Score=131.06 Aligned_cols=297 Identities=11% Similarity=-0.017 Sum_probs=217.4
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+.+ +.+...|.
T Consensus 140 ~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------------------p~~~~a~~ 198 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------------------PDYSKALN 198 (615)
T ss_pred cCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------------------CCCHHHHH
Confidence 89999999999999874 6788889999999999999999999998887655 34566788
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCC----------------------------CCC-C---HhhHHHHHHH--------
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHG----------------------------FGL-S---SMLYATAFSA-------- 184 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g----------------------------~~p-~---~~t~~~ll~~-------- 184 (385)
.+..+|...|++++|+.-|......+ ..| + ..........
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 88888888888888876554432211 011 0 0000000000
Q ss_pred -------------------------hcCccCccchhhHHHHHHHhC-CCC-chHHHHHHHHHHHhcCCCC----------
Q 040338 185 -------------------------RASVYDLEWGPHLHSRVVHME-PSL-DVFVGSGLIDMYLKCGCNG---------- 227 (385)
Q Consensus 185 -------------------------~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~---------- 227 (385)
....+++++|.+.|+...+.+ ..| ....+..+...+...|+.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 011246778888888888765 223 3456777777777777766
Q ss_pred -CCch-hhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHH
Q 040338 228 -IESS-IQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVS 290 (385)
Q Consensus 228 -~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~ 290 (385)
..|+ ...|..+...+...|++++|+..|++..+ | +...|..+...+...|++++|+..+ .+..
T Consensus 359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 3444 56788888888899999999999988765 2 5678888888899999999999888 6777
Q ss_pred HHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCc-ch-------HHHHHHHH
Q 040338 291 LLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTC-VI-------WGALLGAC 359 (385)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~-~~-------~~~li~~~ 359 (385)
+...+.+.|++++|...+++..+..+ ...++.+...+...|++++|++.|+..... |+. .. ++..+..+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 78888889999999999999887766 778888888999999999999999886652 321 11 12222234
Q ss_pred HhcCChHHHHHHHHHHHhccccC
Q 040338 360 CSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 360 ~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
...|++++|.+++++.++.+|.+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCc
Confidence 44689999999999988877654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=1.4e-12 Score=126.03 Aligned_cols=354 Identities=11% Similarity=-0.032 Sum_probs=207.1
Q ss_pred ccCCChHHHHHHHHHHHHcccchh-h-----HHh----hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHH
Q 040338 5 GSLKSLPIARKIHAQLISTCLISS-I-----FLQ----LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHL 74 (385)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~-~-----~~~----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~ 74 (385)
.+.|++..|+..+.++.+...... . .+. +.++|...+++...|+...+..+......+...|++++|+++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 578999999999999998765532 1 111 899999999988877666655555332223337999999999
Q ss_pred HHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCC
Q 040338 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG 154 (385)
Q Consensus 75 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 154 (385)
++++.+... -++..+..++..+.+.++.++|++.++++.+.+ |+...+-.++..+...+
T Consensus 125 y~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------------------p~~~~~l~layL~~~~~ 183 (822)
T PRK14574 125 WQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--------------------PTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------------------cchHHHHHHHHHHHhcc
Confidence 999998753 356777788899999999999999999887655 44444544444444456
Q ss_pred CchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHH--------------------HhCCCCch---
Q 040338 155 FGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVV--------------------HMEPSLDV--- 210 (385)
Q Consensus 155 ~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~--------------------~~~~~~~~--- 210 (385)
+..+|+..++++.+. .| +...+..+..++.+.|-...|.++..+-. +.+..++.
T Consensus 184 ~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 184 RNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred hHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 665688888888775 45 45555666667776666555554433211 11110100
Q ss_pred HHHHHHHHHHHhcC----CCC-CCch----hhHHHHHHHHHHcCCChhHHHHHHHhcccC--Chh--hHHHHHHHHHhcC
Q 040338 211 FVGSGLIDMYLKCG----CNG-IESS----IQIGKALVTMYAEGGSTQKADLAFELMSRR--NMI--SWMVLISAFSQAG 277 (385)
Q Consensus 211 ~~~~~li~~~~~~g----~~~-~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~--~~~~li~~~~~~g 277 (385)
.-|..+=.++.... ... .++. ..+.-=.+-++...|++.++++.|+.|+.+ .+. +-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 00000000111000 000 1111 111122344555566666666666666642 122 3334566666666
Q ss_pred CCCchHHHH------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc-----------------hhhHHH
Q 040338 278 VLEKPRFFF------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-----------------TCYFVC 322 (385)
Q Consensus 278 ~~~~a~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~~~ 322 (385)
++++|+.++ ....|.-++...+++++|.++++.+.+..+ ...+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 666666666 023456666666666666666666665222 223334
Q ss_pred HHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 323 MVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
++..+...|++.+|++.++++... | |......+...+...|.+.+|.+.++......|.
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 555566666666666666666543 2 4455555666666666666666666655555544
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.62 E-value=8.8e-13 Score=129.19 Aligned_cols=322 Identities=8% Similarity=-0.055 Sum_probs=233.7
Q ss_pred hhhhHHHHHhhhCC---CChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIGP---RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
+.++|..++.+..+ .+...+..+...+.. .|++++|..++++..+.. +.+...+..+..++.+.|+.++|...
T Consensus 30 ~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~---~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 30 QDAEVITVYNRYRVHMQLPARGYAAVAVAYRN---LKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 89999999988763 233447777777666 899999999999998863 44567778888999999999999999
Q ss_pred HHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCc
Q 040338 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASV 188 (385)
Q Consensus 110 ~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 188 (385)
+++..+.. +.+.. +..+...+...|++++|+..++++.+. .| +...+..+..++...
T Consensus 106 l~~~l~~~-------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 106 AKQLVSGA-------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHhC-------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 99987665 34555 888888999999999999999999885 45 444555667777778
Q ss_pred cCccchhhHHHHHHHhCCCCch------HH------------------H---HHHHH---HHHhc--CCCCCCchh-hHH
Q 040338 189 YDLEWGPHLHSRVVHMEPSLDV------FV------------------G---SGLID---MYLKC--GCNGIESSI-QIG 235 (385)
Q Consensus 189 ~~~~~a~~~~~~~~~~~~~~~~------~~------------------~---~~li~---~~~~~--g~~~~~~~~-~~~ 235 (385)
+..+.|++.++.... .|+. .. + ..-+. .+.+. .+++..|.. ...
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 888888877775443 1110 00 0 00011 11111 111111111 111
Q ss_pred HHHHHHHHcCCChhHHHHHHHhcccCC--hh--hHHHHHHHHHhcCCCCchHHHH----------------HHHHHHHHh
Q 040338 236 KALVTMYAEGGSTQKADLAFELMSRRN--MI--SWMVLISAFSQAGVLEKPRFFF----------------FFVSLLSGC 295 (385)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~m~~~~--~~--~~~~li~~~~~~g~~~~a~~~~----------------~~~~l~~~~ 295 (385)
...+..+...|++++|+..|+.+.+.+ .. .-..+..+|...|++++|+..+ ....+..++
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 111334567799999999999998742 12 2233577899999999999998 133455578
Q ss_pred cccCChhhHHHHHHHHHhccc-----------------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHH
Q 040338 296 SHSGPVTKGKHYFTAMAKFTY-----------------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALL 356 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~-----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li 356 (385)
...|++++|.+.++.+....+ ...+..+...+...|+.++|+++++++... | +...+..+.
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 899999999999999988643 123456777889999999999999998774 4 566788999
Q ss_pred HHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 357 GACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 357 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
..+...|++++|++.+++..+..|.+.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 999999999999999999999988753
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.61 E-value=3e-12 Score=123.80 Aligned_cols=325 Identities=10% Similarity=-0.083 Sum_probs=223.7
Q ss_pred hhhhHHHHHhhhC--CCChh-hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIG--PRYLF-TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
++++|...|++.. .|+.. ....++..+.. .|+.++|+..+++.... -+........+...|...|++++|.++
T Consensus 49 d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~---~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 49 DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW---AGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred CHHHHHHHHHHHHhhCccchhhHHHHHHHHHH---cCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7778888888776 33321 12256666555 78888888888888721 111222233335577777888888888
Q ss_pred HHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcc
Q 040338 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189 (385)
Q Consensus 110 ~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 189 (385)
|+++.+.+ +.|...+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 125 y~kaL~~d-------------------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 125 WQSSLKKD-------------------PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHhhC-------------------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 88887766 345667778889999999999999999999775 667666655555554566
Q ss_pred CccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC-------CCch-----hhHH------HHHHHHH-----HcCC
Q 040338 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG-------IESS-----IQIG------KALVTMY-----AEGG 246 (385)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-------~~~~-----~~~~------~~li~~~-----~~~g 246 (385)
+..+|++.++++.+.. +-+...+..++.++.+.|-.. ..|+ ...+ ..+++.- ....
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 6666999999999985 346677788888888888554 1111 1000 0111100 0111
Q ss_pred C---hhHHHHHHHhccc-----CCh-hhHH----HHHHHHHhcCCCCchHHHH-------------HHHHHHHHhcccCC
Q 040338 247 S---TQKADLAFELMSR-----RNM-ISWM----VLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGP 300 (385)
Q Consensus 247 ~---~~~A~~~~~~m~~-----~~~-~~~~----~li~~~~~~g~~~~a~~~~-------------~~~~l~~~~~~~~~ 300 (385)
+ .+.|+.-++.+.. |.. ..|. -.+-++...|+..++++.+ +-..+.++|...+.
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 2 3345555555443 211 1221 2355677888999998888 67789999999999
Q ss_pred hhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC---------------c-chHHHH
Q 040338 301 VTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT---------------C-VIWGAL 355 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~---------------~-~~~~~l 355 (385)
+++|..+++.+..... ......|.-+|..++++++|..+++.+.+. |. - ..+..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 9999999999876542 222467899999999999999999999873 31 1 124456
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 356 LGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 356 i~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
+..+.-.|+.++|.+.++++....|.+.
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~aP~n~ 450 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTAPANQ 450 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 7888999999999999999999888764
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.59 E-value=8.1e-12 Score=123.25 Aligned_cols=159 Identities=11% Similarity=-0.020 Sum_probs=97.0
Q ss_pred cccCCChHHHHHHHHHHHHcccchhhHHh-------hhhhHHHHHhhhC--CCC-hhhHHHHHHHH-----HhhhccCCh
Q 040338 4 CGSLKSLPIARKIHAQLISTCLISSIFLQ-------LIDDDYRVFCDIG--PRY-LFTYNTMINGG-----VRCLCVGNI 68 (385)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~~~~--~~~-~~~~~~li~~~-----~~~~~~~~~ 68 (385)
+.+.|++++|+...+..++.... +.... +.++|..+++++. .|+ ...+..+.... .. -.+.
T Consensus 88 yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~La~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~---y~q~ 163 (987)
T PRK09782 88 YRHFGHDDRARLLLEDQLKRHPG-DARLERSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALR---LAQL 163 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhh---hhhH
Confidence 44566777777777776665431 11111 6667777777665 333 22222222220 01 1333
Q ss_pred HHHHHHHHHHHHhccCCCchHHHhH-HHHHHhcCChhHHHHHHHhccCCCccccc-------------cchHHHHHHhcC
Q 040338 69 KMALHLHGLVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCWK-------------FGIIRLLIMFQK 134 (385)
Q Consensus 69 ~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------------~~~~~a~~~~~~ 134 (385)
++|.+.++ .......|+..+.... .+.|.+.|++++|++++.++.+.++.... +. +.+..++.+
T Consensus 164 eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~ 241 (987)
T PRK09782 164 PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ 241 (987)
T ss_pred HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch
Confidence 55555555 3333334445555555 78888899999999999998877653332 22 566666665
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 135 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
..+.++..+..+...|.+.|+.++|..+++++..
T Consensus 242 ~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 242 GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 4455777888888999999999999988888643
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=1.7e-11 Score=111.14 Aligned_cols=289 Identities=10% Similarity=-0.042 Sum_probs=214.4
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhH-HHHHHhcCChhHHHHHHHhccCCCccccccchHHHH
Q 040338 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLL 129 (385)
Q Consensus 51 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~ 129 (385)
....+..|+.... .|+++.|.+......+.+ +++..+..+ ..+..+.|+.+.|...+.++.+..
T Consensus 84 ~~~~~~~gl~a~~-eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~------------ 148 (398)
T PRK10747 84 ARKQTEQALLKLA-EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA------------ 148 (398)
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 3444555554421 599999998877655532 233333333 344477899999999999987643
Q ss_pred HHhcCCCCCCcchHH--HHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 130 IMFQKMPERDLVSWN--TMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 130 ~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
|+...+- .....+...|+++.|...++++.+. .| +......+...|.+.|+++++.+++..+.+.+.
T Consensus 149 --------~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 149 --------DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred --------CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 4433222 3357888999999999999999886 45 567778889999999999999999999999876
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchH
Q 040338 207 SLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPR 283 (385)
Q Consensus 207 ~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~ 283 (385)
.++. ....+- ..+|..++.......+.+...++++.+.+ .+......+..++...|+.++|.
T Consensus 219 ~~~~-~~~~l~--------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 219 GDEE-HRAMLE--------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred CCHH-HHHHHH--------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5322 121110 01222333333444566777777777754 36677778888888889988888
Q ss_pred HHH---------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcch
Q 040338 284 FFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVI 351 (385)
Q Consensus 284 ~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~ 351 (385)
..+ .-..++.+....++.+++.+..+...+..+ +.....+...+.+.|++++|.+.|+...+. |+..+
T Consensus 284 ~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 284 QIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 888 222344555566999999999999888888 777889999999999999999999999885 99999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 040338 352 WGALLGACCSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 352 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 379 (385)
|..+...+.+.|+.++|.+.+++-...-
T Consensus 364 ~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 364 YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999986643
No 27
>PF13041 PPR_2: PPR repeat family
Probab=99.51 E-value=4.6e-14 Score=86.89 Aligned_cols=50 Identities=28% Similarity=0.309 Sum_probs=47.6
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcC
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 187 (385)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.51 E-value=1.1e-11 Score=122.33 Aligned_cols=291 Identities=10% Similarity=-0.008 Sum_probs=178.4
Q ss_pred cCChHHHHHHHHHHHHh-c-cCCCchHHHhHHHHHHhcCCh---hHHHHHHHhccCCCccccccchHHHH---HHhcCCC
Q 040338 65 VGNIKMALHLHGLVKKF-Y-FVSDESIAKSSIDMHVKCGAV---DYAESAFLRMLNPSLFCWKFGIIRLL---IMFQKMP 136 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~-g-~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~a~---~~~~~~~ 136 (385)
.|+.++|.++++..... + -.++....+-|+..|.+.+.+ .++..+-..+..++...|.|....+. ..+....
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 67788888888777662 1 223444555777888887773 34444433344444444555443322 2222221
Q ss_pred ---CC--CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchH
Q 040338 137 ---ER--DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211 (385)
Q Consensus 137 ---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 211 (385)
++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...++.+.... |+..
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~ 543 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNE 543 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcH
Confidence 23 56678888888776 8899999988887764 4776554445555678999999999999875542 2222
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChh---hHHHHHHHHHhcCCCCchHHHH--
Q 040338 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI---SWMVLISAFSQAGVLEKPRFFF-- 286 (385)
Q Consensus 212 ~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~a~~~~-- 286 (385)
.+ ..+...+.+.|+.++|...++...+.+.. .+..+.......|++++|+..+
T Consensus 544 a~----------------------~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 544 DL----------------------LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HH----------------------HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 23 33344555566666666666665543221 2222222333446666666666
Q ss_pred ---------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHH
Q 040338 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWG 353 (385)
Q Consensus 287 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~ 353 (385)
.+..+..++.+.|+.++|...+++.....+ ...+..+...+...|+.++|+..|++..+. | +...+.
T Consensus 602 AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 602 SLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 556666666667777777777777666666 556666666677777777777777666542 3 344566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 354 ALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 354 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
.+..++...|++++|...+++..+..|..
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 66677777777777777777776666554
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=2.4e-10 Score=104.15 Aligned_cols=290 Identities=10% Similarity=-0.061 Sum_probs=194.3
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHH-HhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIA-KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
..+..+..|+.. ...|+++.|.+.+....+. .|+...+ -....++.+.|+.+.|.+.+.+..+...
T Consensus 83 k~~~~~~~glla-~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p---------- 149 (409)
T TIGR00540 83 KAQKQTEEALLK-LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG---------- 149 (409)
T ss_pred HHHHHHHHHHHH-HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------
Confidence 345556666554 2379999999999887664 4554433 3345777788999999999988754321
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
.+.....-.....+...|+++.|...++++.+. .| +......+...+...|+++++.+.+..+.+.+..
T Consensus 150 --------~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 150 --------NDNILVEIARTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred --------cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 222233344577788899999999999999886 35 5567788899999999999999999999998754
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHH
Q 040338 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRF 284 (385)
Q Consensus 208 ~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~ 284 (385)
+.......-..++ ..++..-......+.....++...+ .+...+..+...+...|+.++|.+
T Consensus 220 ~~~~~~~l~~~a~---------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 220 DDEEFADLEQKAE---------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred CHHHHHHHHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 3332211111111 1111111111223333334443332 244455555555555555555555
Q ss_pred HH----------H----HHHHHHHhcccCChhhHHHHHHHHHhccc--h--hhHHHHHHHHHccCCHHHHHHHHHh--CC
Q 040338 285 FF----------F----FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--T--CYFVCMVDLLGLSGLLGEAKKLIDE--MP 344 (385)
Q Consensus 285 ~~----------~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~--~~~~~li~~~~~~g~~~~A~~~~~~--m~ 344 (385)
.+ . ...........++.+.+.+.++...+..+ + ....++...+.+.|++++|.+.|+. ..
T Consensus 285 ~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 285 IIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC 364 (409)
T ss_pred HHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh
Confidence 55 0 11122222335677888899988888777 5 6677899999999999999999993 43
Q ss_pred C-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 345 S-KPTCVIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 345 ~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
+ .|+...+..+...+.+.|+.++|.+++++...
T Consensus 365 ~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 365 KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 59998899999999999999999999998643
No 30
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=2.5e-11 Score=112.46 Aligned_cols=84 Identities=7% Similarity=-0.030 Sum_probs=75.4
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
|+..+|.+++.+-.-+|+.+.|..++.+|++.|++.+.+-|-.|+-+ .++...++.++.-|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 78889999999999999999999999999999999999988887765 788888899999999999999999999888
Q ss_pred HHHHhcC
Q 040338 218 DMYLKCG 224 (385)
Q Consensus 218 ~~~~~~g 224 (385)
-.+.++|
T Consensus 279 ip~l~N~ 285 (1088)
T KOG4318|consen 279 IPQLSNG 285 (1088)
T ss_pred Hhhhcch
Confidence 7777755
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=6.8e-11 Score=107.15 Aligned_cols=267 Identities=10% Similarity=0.005 Sum_probs=191.7
Q ss_pred hhhhHHHHHhhhCCC-ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHH--hHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIGPR-YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAK--SSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~ 109 (385)
++++|.+.+...+.. +...-+.++.+.. ....|+++.|.+.+.++.+. .|+...+. .....+...|+.+.|...
T Consensus 99 d~~~A~k~l~~~~~~~~~p~l~~llaA~a-A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 99 DYQQVEKLMTRNADHAEQPVVNYLLAAEA-AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 788888888876532 1222223332222 23489999999999999875 55654433 336788889999999999
Q ss_pred HHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-------hhHHHHH
Q 040338 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS-------MLYATAF 182 (385)
Q Consensus 110 ~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll 182 (385)
+++..+.+ +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++
T Consensus 176 l~~~~~~~-------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 176 VDKLLEVA-------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHhcC-------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99987766 467788999999999999999999999999988754322 1233333
Q ss_pred HHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCC
Q 040338 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262 (385)
Q Consensus 183 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 262 (385)
.......+.+...++++.+-+. . +.+......+...+...|+.++|..++++..+..
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~-~----------------------~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~ 293 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRK-T----------------------RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ 293 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHH-H----------------------hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3333333333333444433221 1 2244455677888888899999999998887632
Q ss_pred hhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHHHc
Q 040338 263 MISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGL 329 (385)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~ 329 (385)
...--.++.+....++.+++++.. .+..+...|.+.+++++|.+.|+...+..+ ...+..+...+.+
T Consensus 294 ~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 294 YDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR 373 (398)
T ss_pred CCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 222223444555668888887777 678889999999999999999999999988 7777889999999
Q ss_pred cCCHHHHHHHHHhCC
Q 040338 330 SGLLGEAKKLIDEMP 344 (385)
Q Consensus 330 ~g~~~~A~~~~~~m~ 344 (385)
.|+.++|.+.+++-.
T Consensus 374 ~g~~~~A~~~~~~~l 388 (398)
T PRK10747 374 LHKPEEAAAMRRDGL 388 (398)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999998754
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=2e-13 Score=118.18 Aligned_cols=248 Identities=15% Similarity=0.094 Sum_probs=85.1
Q ss_pred cCChHHHHHHHHHHHHhc-cCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchH
Q 040338 65 VGNIKMALHLHGLVKKFY-FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (385)
.|++++|+++++...... .+.+...|..+.......++.+.|.+.++++...+ +.+...+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-------------------~~~~~~~ 81 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-------------------KANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------ccccccc
Confidence 788888888886554443 23355555556666667788888888888887665 3455667
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 223 (385)
..++.. ...+++++|.+++++..+. .++...+...+..+.+.++++++.++++.+......
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~---------------- 142 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA---------------- 142 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T------------------
T ss_pred cccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC----------------
Confidence 777776 6788888888888776554 345566667777788888888888888887653221
Q ss_pred CCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCC
Q 040338 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGP 300 (385)
Q Consensus 224 g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~ 300 (385)
+.+...|..+...+.+.|+.++|+..+++..+ | |....+.++..+.. .|+
T Consensus 143 -----~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----------------------~~~ 195 (280)
T PF13429_consen 143 -----PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID----------------------MGD 195 (280)
T ss_dssp ------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----------------------TCH
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------------------CCC
Confidence 12333446666667777788888888888765 4 34455555555544 445
Q ss_pred hhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 040338 301 VTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KP-TCVIWGALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
.+++.++++...+..+ +..+..+..+|...|+.++|...|++... .| |......+..++...|+.++|.++.++..
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5555566666555543 56667777888888888888888887765 24 66667777788888888888888777654
Q ss_pred h
Q 040338 377 Q 377 (385)
Q Consensus 377 ~ 377 (385)
.
T Consensus 276 ~ 276 (280)
T PF13429_consen 276 R 276 (280)
T ss_dssp -
T ss_pred c
Confidence 3
No 33
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=4e-13 Score=82.68 Aligned_cols=50 Identities=30% Similarity=0.296 Sum_probs=48.3
Q ss_pred CChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh
Q 040338 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99 (385)
Q Consensus 47 ~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 99 (385)
||+.+||++|.+|++ .|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~---~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCK---AGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHH---CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 899999999999888 99999999999999999999999999999999985
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.1e-10 Score=109.42 Aligned_cols=365 Identities=14% Similarity=0.077 Sum_probs=226.6
Q ss_pred CChHHHHHHHHHHHHcccchhh----HHh---------hhhhHHHHHhhhCC--CCh--hhHHHHHHHHHhhhccCChHH
Q 040338 8 KSLPIARKIHAQLISTCLISSI----FLQ---------LIDDDYRVFCDIGP--RYL--FTYNTMINGGVRCLCVGNIKM 70 (385)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~----~~~---------~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~~~~ 70 (385)
|+++.+..+.+.+......... +-+ ++++|...|.+... +|. ..+--+-..+.. .|+++.
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~---~~dle~ 360 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK---RGDLEE 360 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH---hchHHH
Confidence 5666666666666554411111 111 66777766665442 222 222233444444 677777
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcC----ChhHHHHHHHhccCCCccccc------------------cchHHH
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCG----AVDYAESAFLRMLNPSLFCWK------------------FGIIRL 128 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~~~------------------~~~~~a 128 (385)
+...|+...+.. +.+..+...|...|+..+ ..+.|..++....+..+.... +-+..|
T Consensus 361 s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 361 SKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNA 439 (1018)
T ss_pred HHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 777777776653 334556666666666554 345555555554443321111 445555
Q ss_pred HHHhcC-CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC---CCCCCH------hhHHHHHHHhcCccCccchhhHH
Q 040338 129 LIMFQK-MPERDLVSWNTMISILTRHGFGFETLCTFIELWNH---GFGLSS------MLYATAFSARASVYDLEWGPHLH 198 (385)
Q Consensus 129 ~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~ 198 (385)
..++.. +..+.+...|.+...+...|.+.+|...|...... -..+|. .+--.+.+..-..++.+.|.++|
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 544433 33456677888888888889999998888887654 122333 23334555666777888888888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCCC-------------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhcc
Q 040338 199 SRVVHMEPSLDVFVGSGLIDMYLKCGCNG-------------------IESSIQIGKALVTMYAEGGSTQKADLAFELMS 259 (385)
Q Consensus 199 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~-------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 259 (385)
..+.+..+ ..|++|.+.|... ...+...++.+...+.+...+..|.+-|+.+.
T Consensus 520 k~Ilkehp--------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~ 591 (1018)
T KOG2002|consen 520 KSILKEHP--------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETIL 591 (1018)
T ss_pred HHHHHHCc--------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHH
Confidence 88887643 3455555554111 45555666667777777777777777665554
Q ss_pred c-----CChhhHHHHHHHHHhc------------CCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHH
Q 040338 260 R-----RNMISWMVLISAFSQA------------GVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTA 310 (385)
Q Consensus 260 ~-----~~~~~~~~li~~~~~~------------g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~ 310 (385)
+ +|..+.-+|.+.|.+. +..++|+++| +-|-+.-.++..|++..|..||..
T Consensus 592 ~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 592 KKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 3 2444444444444321 2234555555 233444555677888999999998
Q ss_pred HHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCCC
Q 040338 311 MAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVFG 384 (385)
Q Consensus 311 ~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 384 (385)
..+... ..+|--+..+|..+|++..|+++|+....+ .+......|.+++.+.|.+.+|.+.+.......|.++.
T Consensus 672 VrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 672 VREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 888766 777778888899999999999998877653 45667778888888889999998888888887777653
No 35
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.2e-09 Score=91.49 Aligned_cols=294 Identities=12% Similarity=-0.026 Sum_probs=232.4
Q ss_pred HHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHh
Q 040338 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132 (385)
Q Consensus 53 ~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~ 132 (385)
..+..++.+ ...|++..|+++..+-.+.+-. ....|-.-..+--..|+.+.+-+.+.+..+.-.
T Consensus 86 ~~~~egl~~-l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-------------- 149 (400)
T COG3071 86 KALNEGLLK-LFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-------------- 149 (400)
T ss_pred HHHHHHHHH-HhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC--------------
Confidence 345555444 2379999999999998777644 334455666777788999999999999877633
Q ss_pred cCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHH
Q 040338 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212 (385)
Q Consensus 133 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 212 (385)
.++...+-+........|+++.|..-++.+.+.+.. +.........+|.+.|++.....+...+.+.|.-.+...
T Consensus 150 ----~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 150 ----DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred ----CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 567777888888999999999999999999886322 566778899999999999999999999999987555433
Q ss_pred HHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH---
Q 040338 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF--- 286 (385)
Q Consensus 213 ~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~--- 286 (385)
- .....+|..+++-....+..+.-...|+..+. .++..-..++.-+.+.|+.++|.++.
T Consensus 225 ~---------------~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 225 A---------------RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred H---------------HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 2 23455677788877777778887778888765 36777778888899999999998887
Q ss_pred -------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHHH
Q 040338 287 -------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALL 356 (385)
Q Consensus 287 -------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li 356 (385)
. -...-.+.+.++.+.-++..+.-.+..+ +..+.+|...|.+.+.|.+|...|+..... |+..+|+.+.
T Consensus 290 Lk~~~D~~-L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la 368 (400)
T COG3071 290 LKRQWDPR-LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368 (400)
T ss_pred HHhccChh-HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHH
Confidence 3 2333455677888888888877666555 888999999999999999999999987764 9999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 357 GACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 357 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
.++.+.|+..+|.+..++..-.-..|+
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 369 DALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999875444443
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=4.4e-13 Score=115.99 Aligned_cols=227 Identities=14% Similarity=0.074 Sum_probs=93.9
Q ss_pred hHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 040338 92 SSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171 (385)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 171 (385)
.+...+.+.|++++|++++++-..... ++.|...|..+....-..++++.|...++++...+.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-----------------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~ 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-----------------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------cccccccccccccccccccccccccccccccccccc
Confidence 557788889999999999955433221 033455555566667778899999999999987643
Q ss_pred CCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHH
Q 040338 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251 (385)
Q Consensus 172 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A 251 (385)
. +...+..++.. ...+++++|.++++...+.. ++ ...+..++..+...++++++
T Consensus 76 ~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~----------------------~~~l~~~l~~~~~~~~~~~~ 129 (280)
T PF13429_consen 76 A-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GD----------------------PRYLLSALQLYYRLGDYDEA 129 (280)
T ss_dssp --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred c-ccccccccccc-cccccccccccccccccccc--cc----------------------cchhhHHHHHHHHHhHHHHH
Confidence 3 45566667666 68899999998887765543 22 22345566677778899999
Q ss_pred HHHHHhccc-----CChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHH
Q 040338 252 DLAFELMSR-----RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMV 324 (385)
Q Consensus 252 ~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li 324 (385)
.++++...+ ++... |..+...+.+.|+.++|.+.+++..+..+ ......++
T Consensus 130 ~~~l~~~~~~~~~~~~~~~----------------------~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 130 EELLEKLEELPAAPDSARF----------------------WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp HHHHHHHHH-T---T-HHH----------------------HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHH----------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999888653 12223 33344455566778888999999999888 77888999
Q ss_pred HHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 325 DLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
..+...|+.+++.++++..... .|...|..+..+|...|+.++|+..+++..+.+|.++
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9999999999988888777653 5667888999999999999999999999999888654
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=9.4e-10 Score=91.17 Aligned_cols=287 Identities=13% Similarity=0.050 Sum_probs=200.6
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
+..|-.-++.+.. .+.++|.++|-+|.+.. +.+.++.-+|-+.|.+.|.++.|+++-+.+.+
T Consensus 36 sr~Yv~GlNfLLs----~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~------------- 97 (389)
T COG2956 36 SRDYVKGLNFLLS----NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE------------- 97 (389)
T ss_pred cHHHHhHHHHHhh----cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-------------
Confidence 3345445544433 88899999999998743 33556667788899999999999998877644
Q ss_pred HHHhcCCCCCCc------chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHH
Q 040338 129 LIMFQKMPERDL------VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202 (385)
Q Consensus 129 ~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 202 (385)
.||. ..--.|..=|...|-+|.|..+|..+.+.|. .-....-.|+..|-...+|++|+++-+++.
T Consensus 98 --------spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 98 --------SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2332 2233455667888888999999988876532 123445668888888888999998888888
Q ss_pred HhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCCh---hhHHHHHHHHHhcCCC
Q 040338 203 HMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM---ISWMVLISAFSQAGVL 279 (385)
Q Consensus 203 ~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~ 279 (385)
+.+..+...-. . ..|.-+...+....+.+.|..++.+..+.|. ..--.+.......|++
T Consensus 169 k~~~q~~~~eI---A---------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 169 KLGGQTYRVEI---A---------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HcCCccchhHH---H---------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch
Confidence 87765443211 1 2234455666666788888888887776433 3333455677888888
Q ss_pred CchHHHH-------------HHHHHHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHH-HHhCC
Q 040338 280 EKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKL-IDEMP 344 (385)
Q Consensus 280 ~~a~~~~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~-~~~m~ 344 (385)
+.|++.| +...+..+|...|+.++...++..+.+... ......+-+......-.+.|... .+.+.
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 8888888 778888999999999999999999888777 55555555555544445555554 55666
Q ss_pred CCCCcchHHHHHHHHHhc---CChHHHHHHHHHHHhccc
Q 040338 345 SKPTCVIWGALLGACCSH---YNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 345 ~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~ 380 (385)
.+|+...+..|+..-... |...+...+++.|....+
T Consensus 311 r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 311 RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 679999999999876543 345677777788775444
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=6.1e-11 Score=106.96 Aligned_cols=274 Identities=14% Similarity=0.022 Sum_probs=158.1
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCcccc-----------ccchHHHHHHh-
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCW-----------KFGIIRLLIMF- 132 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----------~~~~~~a~~~~- 132 (385)
.-+.++|...|...... +.-+..+...+..+|.+.++.++|.++|+.+++...... .-+-+-++.++
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 34567777787774333 344456667777888888888888888888766543110 00000011110
Q ss_pred ---cCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCC
Q 040338 133 ---QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSL 208 (385)
Q Consensus 133 ---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 208 (385)
-.+.+..+.+|.++.++|.-.++.+.|++.|++... +.| ...+|+.+-.-+.....+|.|...|+..+ ..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~ 484 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GV 484 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cC
Confidence 001123344555555555555555555555555443 233 34444444444444455555555554442 22
Q ss_pred chHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHH
Q 040338 209 DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFF 288 (385)
Q Consensus 209 ~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (385)
|+..| .+|--+...|.+.++++.|+-.|++..+-|... .. ..
T Consensus 485 ~~rhY-------------------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--sv-----------------i~ 526 (638)
T KOG1126|consen 485 DPRHY-------------------NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SV-----------------IL 526 (638)
T ss_pred Cchhh-------------------HHHHhhhhheeccchhhHHHHHHHhhhcCCccc--hh-----------------HH
Confidence 23333 233444555555555555555555544311110 00 22
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC-cchHHHHHHHHHhcCC
Q 040338 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT-CVIWGALLGACCSHYN 364 (385)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~-~~~~~~li~~~~~~g~ 364 (385)
..+...+-+.|+.++|.++++++....+ +-.--..+..+...+++++|...++++++- |+ ...|-.+...|.+.|+
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 2333444556777788888888888777 333333566677889999999999999874 54 4567778889999999
Q ss_pred hHHHHHHHHHHHhccccCC
Q 040338 365 TKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 365 ~~~a~~~~~~~~~~~~~~~ 383 (385)
.+.|+.=|--+.+++|++.
T Consensus 607 ~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 607 TDLALLHFSWALDLDPKGA 625 (638)
T ss_pred chHHHHhhHHHhcCCCccc
Confidence 9999999988888888764
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.6e-09 Score=101.83 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=68.4
Q ss_pred CChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 040338 299 GPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRN 374 (385)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~ 374 (385)
+..++|.++|.++.+..+ ...-|-+.-.++..|++++|..+|....+. ....+|-.+.++|...|++..|++.|+.
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999888888 455566888899999999999999999875 3567899999999999999999999998
Q ss_pred HHhcc
Q 040338 375 LLQLD 379 (385)
Q Consensus 375 ~~~~~ 379 (385)
..+.-
T Consensus 706 ~lkkf 710 (1018)
T KOG2002|consen 706 CLKKF 710 (1018)
T ss_pred HHHHh
Confidence 76543
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.32 E-value=2.9e-09 Score=99.42 Aligned_cols=339 Identities=10% Similarity=0.057 Sum_probs=214.2
Q ss_pred hhhhHHHHHhhhCC---CChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIGP---RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
++++|.+++.++.+ .+...|-+|-..|-. .|+.+++...+-...... +.|...|..+-....+.|+++.|.-.
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq---rGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ---RGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---cccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 89999999988873 456688888888777 899999998875554433 44668899999999999999999999
Q ss_pred HHhccCCCccccc------------cchHHHHHHhcCCCC----CCcchHHH----HHHHHHhCCCchHHHHHHHHHHHC
Q 040338 110 FLRMLNPSLFCWK------------FGIIRLLIMFQKMPE----RDLVSWNT----MISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 110 ~~~m~~~~~~~~~------------~~~~~a~~~~~~~~~----~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
|.+..+.++..|. |+...|..-|.++-+ .|..-+.. .+..+...++-+.|.+.++.....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999887764444 555555554444322 12122222 233444455556666655555442
Q ss_pred C-CCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHH------HHHHHhcCCCCCCchhhHHHHHHHHH
Q 040338 170 G-FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL------IDMYLKCGCNGIESSIQIGKALVTMY 242 (385)
Q Consensus 170 g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------i~~~~~~g~~~~~~~~~~~~~li~~~ 242 (385)
+ -..+...+++++..+.+..+++.+......+.....++|..-+.+- ...++..| .+..++..++ .+.-++
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~-~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG-KELSYDLRVI-RLMICL 387 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC-CCCCccchhH-hHhhhh
Confidence 2 2234445555566666666666666665555553333333332100 00011111 0033333331 222233
Q ss_pred HcCCChhHHHHHHHhccc------CChhhHHHHHHHHHhcCCCCchHHHH-------------HHHHHHHHhcccCChhh
Q 040338 243 AEGGSTQKADLAFELMSR------RNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTK 303 (385)
Q Consensus 243 ~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~a~~~~-------------~~~~l~~~~~~~~~~~~ 303 (385)
......+....+.....+ .+...|.-+..+|.+.|++.+|+.++ .|-.+..+|...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 333333333333333333 24567888889999999999999998 77888888899999999
Q ss_pred HHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-----------CCcchHHHHHHHHHhcCChHHHHH
Q 040338 304 GKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-----------PTCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 304 a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------p~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
|.+.|+......+ ...-..|-..+-+.|+.++|.+.++.+... |+...--.....+...|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999888777 666677788888999999999999886531 333333345556777888877666
Q ss_pred HHHHHHh
Q 040338 371 VMRNLLQ 377 (385)
Q Consensus 371 ~~~~~~~ 377 (385)
..-+|+.
T Consensus 548 t~~~Lv~ 554 (895)
T KOG2076|consen 548 TASTLVD 554 (895)
T ss_pred HHHHHHH
Confidence 6665554
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.30 E-value=1.8e-09 Score=98.48 Aligned_cols=271 Identities=10% Similarity=-0.050 Sum_probs=182.8
Q ss_pred hhhhHHHHHhhhC--CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHH
Q 040338 33 LIDDDYRVFCDIG--PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 110 (385)
+++.|.+.+.+.. .|++.. +.++.+-. ....|+.+.|.+.+....+....+....--.....+...|+.+.|...+
T Consensus 99 ~~~~A~~~l~~~~~~~~~~~~-~~llaA~a-a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEPVL-NLIKAAEA-AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CHHHHHHHHHHHhhcCCCCHH-HHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888887766 344332 33333322 2237999999999999987532222234444578888899999999999
Q ss_pred HhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHH---hcC
Q 040338 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA---RAS 187 (385)
Q Consensus 111 ~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~---~~~ 187 (385)
+.+.+.. +.+..+...+...+.+.|++++|.+.+..+.+.++.+.......-..+ ...
T Consensus 177 ~~l~~~~-------------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 177 DKLLEMA-------------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHhC-------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9998776 356778889999999999999999999999998754332221111111 123
Q ss_pred ccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhh
Q 040338 188 VYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMIS 265 (385)
Q Consensus 188 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~ 265 (385)
.+..+.+.+.+..+.+..+.. .+.+...+..+...+...|+.++|.+++++..+ ||...
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~-------------------~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~ 298 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRH-------------------RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA 298 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHH-------------------HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc
Confidence 333444445555555443210 012445556777788888899999999988876 44331
Q ss_pred H-HHHHHHH--HhcCCCCchHHHH--------------HHHHHHHHhcccCChhhHHHHHH--HHHhccc-hhhHHHHHH
Q 040338 266 W-MVLISAF--SQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFT--AMAKFTY-TCYFVCMVD 325 (385)
Q Consensus 266 ~-~~li~~~--~~~g~~~~a~~~~--------------~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~-~~~~~~li~ 325 (385)
. ..++..+ ...++.+.+++.+ ...++...|.+.|++++|.+.|+ ...+..+ ...+..+..
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 1 0122322 2334444454444 24467788889999999999999 4555555 666779999
Q ss_pred HHHccCCHHHHHHHHHhC
Q 040338 326 LLGLSGLLGEAKKLIDEM 343 (385)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m 343 (385)
.+.+.|+.++|.+++++.
T Consensus 379 ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 999999999999999875
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.5e-08 Score=88.28 Aligned_cols=345 Identities=12% Similarity=0.037 Sum_probs=211.4
Q ss_pred CCChHHHHHHHHHHHHcccchhhHHh----------hhhhHHHHHh-hhC-CCChhhHHHHHHHHHhhhccCChHHHHHH
Q 040338 7 LKSLPIARKIHAQLISTCLISSIFLQ----------LIDDDYRVFC-DIG-PRYLFTYNTMINGGVRCLCVGNIKMALHL 74 (385)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~~~~a~~~ 74 (385)
.+.+..|+.|+++++.....-+.+-+ ++.-|+++|+ +|. +|+...|++.|.-=.+ -+.++.|..+
T Consensus 120 nk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElR---ykeieraR~I 196 (677)
T KOG1915|consen 120 NKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELR---YKEIERARSI 196 (677)
T ss_pred hhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---hhHHHHHHHH
Confidence 34566677777777776555555444 7777888886 454 7888888888887555 6778888888
Q ss_pred HHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCC---c------cccc-----------------------
Q 040338 75 HGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS---L------FCWK----------------------- 122 (385)
Q Consensus 75 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~------~~~~----------------------- 122 (385)
++..+- +.|++..|-.....=-++|++..|.++|+...+.- . +.+.
T Consensus 197 YerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 197 YERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred HHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887775 35777777777777777777777777776653210 0 0000
Q ss_pred -------------------cchHHHHHHh--------cCCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 040338 123 -------------------FGIIRLLIMF--------QKMP---ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172 (385)
Q Consensus 123 -------------------~~~~~a~~~~--------~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 172 (385)
|+.....+.. ..+. +.|-.+|--.+..-...|+.+...++|++.... ++
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vp 353 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VP 353 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CC
Confidence 2211111111 0011 123334444555555667777777777777654 44
Q ss_pred CCHh-----hHHH-HHH-Hh---cCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHH
Q 040338 173 LSSM-----LYAT-AFS-AR---ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242 (385)
Q Consensus 173 p~~~-----t~~~-ll~-~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~ 242 (385)
|-.. -|-. .|+ +| ....|.+.+.++++..++. ++....||..+=-+|+ ..-
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA------------------~fe 414 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYA------------------QFE 414 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHH------------------HHH
Confidence 4211 0111 111 11 2445666666777766663 3444455544333332 222
Q ss_pred HcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHH
Q 040338 243 AEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYF 308 (385)
Q Consensus 243 ~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~ 308 (385)
.++.++..|.+++..... |...+|..-|..=.+.+++++...++ +|......-...|+.+.|..+|
T Consensus 415 IRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345677777777765543 66666666676666777777777776 6666666666778888888888
Q ss_pred HHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHHHHHHH-----hcC-----------ChHH
Q 040338 309 TAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALLGACC-----SHY-----------NTKL 367 (385)
Q Consensus 309 ~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~-----~~g-----------~~~~ 367 (385)
+-....+. ...+.+.|+.-...|.++.|..++++..+. +...+|-.+...-. ..+ ....
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~ 574 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKR 574 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHH
Confidence 88888776 556667777777888888899888888775 56667777665544 223 3456
Q ss_pred HHHHHHHHH
Q 040338 368 AELVMRNLL 376 (385)
Q Consensus 368 a~~~~~~~~ 376 (385)
|..+|++..
T Consensus 575 AR~iferAn 583 (677)
T KOG1915|consen 575 ARKIFERAN 583 (677)
T ss_pred HHHHHHHHH
Confidence 677776653
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.7e-08 Score=83.87 Aligned_cols=279 Identities=15% Similarity=0.075 Sum_probs=195.1
Q ss_pred cchhhHHh-------hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCC---chHHHhHH
Q 040338 25 LISSIFLQ-------LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD---ESIAKSSI 94 (385)
Q Consensus 25 ~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li 94 (385)
+..+.+.. ..++|.++|-+|.+-|+.||.+=+.--.-+.++|.+++|+++++.+.++.--+. ....-.|.
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 44555554 899999999999987877776433322223349999999999999998521111 12334566
Q ss_pred HHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 040338 95 DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS 174 (385)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 174 (385)
.=|...|-++.|+.+|..+.+.+ ..-...-.-|+..|-...+|++|+++-+++.+.|-.+.
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-------------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-------------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 77788899999999998887644 23445677799999999999999999999988765553
Q ss_pred ----HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhH
Q 040338 175 ----SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250 (385)
Q Consensus 175 ----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~ 250 (385)
...|.-+...+....+++.|...+....+.+.+... .--.+.+.....|+++.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR-----------------------Asi~lG~v~~~~g~y~~ 232 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR-----------------------ASIILGRVELAKGDYQK 232 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee-----------------------hhhhhhHHHHhccchHH
Confidence 234566777777778899999999998887653222 22345677788899999
Q ss_pred HHHHHHhcccCCh----hhHHHHHHHHHhcCCCCchHHHH-----------HHHHHHHHhcccCChhhHHHHHHHHHhcc
Q 040338 251 ADLAFELMSRRNM----ISWMVLISAFSQAGVLEKPRFFF-----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315 (385)
Q Consensus 251 A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~a~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (385)
|.+.++...+.|. .+...|..+|.+.|++++....+ .-..+-..-....-.+.|...+.+-.+..
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~ 312 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRK 312 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC
Confidence 9999999988655 45667889999999999988877 22222222222333455555555544444
Q ss_pred c-hhhHHHHHHHHHc---cCCHHHHHHHHHhCCC
Q 040338 316 Y-TCYFVCMVDLLGL---SGLLGEAKKLIDEMPS 345 (385)
Q Consensus 316 ~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 345 (385)
+ ...+..+|+.-.. -|+..+-..+++.|..
T Consensus 313 Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 313 PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 4 7777778877654 4456666666666643
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.4e-09 Score=89.30 Aligned_cols=294 Identities=13% Similarity=0.037 Sum_probs=219.8
Q ss_pred CCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccc---------cchHHHHHHhcCCCCCCcchHH-HHHHHHHhC
Q 040338 84 VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK---------FGIIRLLIMFQKMPERDLVSWN-TMISILTRH 153 (385)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~ 153 (385)
.-|...+-.....+-+.|..+.|.+.|......-+.-|. .+++.+..+-...+..+...-. -+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 334444444445556678888899888887765555554 3333333333333221111111 233566666
Q ss_pred CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC--CCchHHHHHHHHHHHhcCCCC----
Q 040338 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP--SLDVFVGSGLIDMYLKCGCNG---- 227 (385)
Q Consensus 154 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~---- 227 (385)
.+.+++..=.+.....|++-+...-+....+.-...|+++|+.+|+++.+..+ --|..+|+.++-.--......
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 78888888888888888776665555566666788999999999999999854 236677776654433222111
Q ss_pred -----CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCCchHHHH------------H
Q 040338 228 -----IESSIQIGKALVTMYAEGGSTQKADLAFELMSRR---NMISWMVLISAFSQAGVLEKPRFFF------------F 287 (385)
Q Consensus 228 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~------------~ 287 (385)
.+--..|...+.+-|.-.++.++|...|+...+- -...|+.+.+-|....+...|++-+ .
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 3334456777888888889999999999988763 4578888999999999999999888 8
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcC
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHY 363 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g 363 (385)
|-.+.++|.-.+...-|.-.|++.....+ +..+.+|.++|.+.++.++|++-|.+...- .+...+..|.+.|-+.+
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888 999999999999999999999999988764 44578999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 040338 364 NTKLAELVMRNLLQ 377 (385)
Q Consensus 364 ~~~~a~~~~~~~~~ 377 (385)
+.++|-..+++.++
T Consensus 481 d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998776
No 45
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.8e-08 Score=84.46 Aligned_cols=286 Identities=11% Similarity=0.008 Sum_probs=202.7
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHh-ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHh
Q 040338 54 TMINGGVRCLCVGNIKMALHLHGLVKKF-YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMF 132 (385)
Q Consensus 54 ~li~~~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~ 132 (385)
.=|.+++.|. .++-..+...+-.+... -++-|+.....+.+++...|+.++|+..|++....++
T Consensus 199 ~wika~Aq~~-~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-------------- 263 (564)
T KOG1174|consen 199 KWIKALAQMF-NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-------------- 263 (564)
T ss_pred HHHHHHHHHH-hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh--------------
Confidence 3455555433 34444444444333332 3667888899999999999999999999988765542
Q ss_pred cCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHH
Q 040338 133 QKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFV 212 (385)
Q Consensus 133 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 212 (385)
-++.........+.+.|+++....+...+... .+-+...|..-.......++++.|+.+-+..++....
T Consensus 264 -----y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r----- 332 (564)
T KOG1174|consen 264 -----DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR----- 332 (564)
T ss_pred -----hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----
Confidence 22222233333456788888888888777653 1123333333333445667888888888877765431
Q ss_pred HHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH--H
Q 040338 213 GSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF--F 287 (385)
Q Consensus 213 ~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~--~ 287 (385)
++..+-.-.+.+...|+.++|.--|+..+. | +..+|..|+..|...|++.+|.-+- +
T Consensus 333 ------------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 333 ------------------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred ------------------cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 222223334556677899999999987654 4 7899999999999999999987655 2
Q ss_pred H----------HHHH-HHhc-ccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchH
Q 040338 288 F----------VSLL-SGCS-HSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIW 352 (385)
Q Consensus 288 ~----------~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~ 352 (385)
+ +.+. ..|. ....-++|..++++..+..+ ....+.+.+.+...|+.++++.+++..... ||....
T Consensus 395 ~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH 474 (564)
T KOG1174|consen 395 IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLH 474 (564)
T ss_pred HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHH
Confidence 2 2221 1121 23456889999999888877 777888889999999999999999988775 999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 353 GALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 353 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
+.|.+.+...+.+++|+.-|...++.+|++-
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 9999999999999999999999999998763
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.20 E-value=2.5e-08 Score=93.33 Aligned_cols=289 Identities=12% Similarity=0.093 Sum_probs=185.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|.+++.+.++.. +.+...|.+|...|-..|+.+++...+--....+ +.|..-|.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------------------p~d~e~W~ 211 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------------------PKDYELWK 211 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------------------CCChHHHH
Confidence 599999999999999975 5588899999999999999999998875554333 23444555
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchH-------------
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF------------- 211 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------- 211 (385)
.+-....+.|.++.|.-+|.+..+. -+++...+--=...|-+.|+...|..-|.++.+..++.|..
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 5555555555555555555555543 12233333333444555555555555555555443322211
Q ss_pred --------HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc----C------------------
Q 040338 212 --------VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR----R------------------ 261 (385)
Q Consensus 212 --------~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~------------------ 261 (385)
....|-.++.+.+ ..-+...++.++..+.+...++.|......+.. +
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~---~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEK---DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 1112222222222 123334556777777777788888777766543 1
Q ss_pred ----ChhhHHH----HHHHHH--hcCCCCchHHHH-------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--
Q 040338 262 ----NMISWMV----LISAFS--QAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-- 316 (385)
Q Consensus 262 ----~~~~~~~----li~~~~--~~g~~~~a~~~~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 316 (385)
+..+|.. ++-++. +.+...+++.-+ .|..+..++...|++.+|..++..+.....
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 1111111 111222 233333443333 788889999999999999999999988777
Q ss_pred -hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 317 -TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 317 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
..+|--+..+|...|.+++|.+.|+..... | +...-.+|...+...|+.++|.+.+..+..
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 668888999999999999999999888764 4 344555677778889999999999888763
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=3e-09 Score=92.12 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=27.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhcc
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRML 114 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (385)
.|.++.|+.-|+...+. .|+..+--.|+-++.--|+-++..+.|.+|.
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli 336 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLI 336 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHh
Confidence 67777777777766654 3554443333333334566666666666663
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=2.8e-10 Score=102.78 Aligned_cols=230 Identities=12% Similarity=-0.055 Sum_probs=185.0
Q ss_pred CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC--CCchHHHHHHHHHHHhcCCCC----
Q 040338 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP--SLDVFVGSGLIDMYLKCGCNG---- 227 (385)
Q Consensus 154 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~---- 227 (385)
-+..+|+..|.+...+ +.-+......+-++|...+++++++++|+.+.+..+ .-+..+|++.+=.+-+.-...
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3577899999885544 333445666788899999999999999999988754 245667777654332222111
Q ss_pred -----CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCCchHHHH------------H
Q 040338 228 -----IESSIQIGKALVTMYAEGGSTQKADLAFELMSRR---NMISWMVLISAFSQAGVLEKPRFFF------------F 287 (385)
Q Consensus 228 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~------------~ 287 (385)
.+....+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...| +
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA 491 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA 491 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH
Confidence 4556789999999999999999999999998873 5688888888899999999999999 7
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcC
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHY 363 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g 363 (385)
|--+.-.|.+.++.+.|+-.|+++.+.++ ......+...+-+.|+.++|+.++++...- .|+.+----+..+...+
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc
Confidence 77888999999999999999999999999 777777888999999999999999988652 34444444556677789
Q ss_pred ChHHHHHHHHHHHhccccCCC
Q 040338 364 NTKLAELVMRNLLQLDVKVFG 384 (385)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~~~~ 384 (385)
++++|+..++++++.-|+.++
T Consensus 572 ~~~eal~~LEeLk~~vP~es~ 592 (638)
T KOG1126|consen 572 RYVEALQELEELKELVPQESS 592 (638)
T ss_pred chHHHHHHHHHHHHhCcchHH
Confidence 999999999999998887653
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=5.4e-09 Score=95.11 Aligned_cols=218 Identities=11% Similarity=0.057 Sum_probs=171.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHC-----C-CCCCHhhH-HHHHHHhcCccCccchhhHHHHHHHhC---CCCch
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNH-----G-FGLSSMLY-ATAFSARASVYDLEWGPHLHSRVVHME---PSLDV 210 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 210 (385)
.+...|...|...|+++.|+.++....+. | ..|...+. +.+...|...+++++|..+|+.++..- +-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556889999999999999999887654 3 23444443 346778889999999999999988641 11111
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc----------CCh-hhHHHHHHHHHhcCCC
Q 040338 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR----------RNM-ISWMVLISAFSQAGVL 279 (385)
Q Consensus 211 ~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~-~~~~~li~~~~~~g~~ 279 (385)
+.-..+++.|-..|.+.|++++|...++...+ +.+ .-++.++..++..+++
T Consensus 280 ------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 280 ------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred ------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch
Confidence 11234567788889999999998888876653 222 3456678889999999
Q ss_pred CchHHHH--------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc----------hhhHHHHHHHHHc
Q 040338 280 EKPRFFF--------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----------TCYFVCMVDLLGL 329 (385)
Q Consensus 280 ~~a~~~~--------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~li~~~~~ 329 (385)
++|..++ +++.+...|...|++++|..+++++..... ...++.+...|.+
T Consensus 342 Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~ 421 (508)
T KOG1840|consen 342 EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE 421 (508)
T ss_pred hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH
Confidence 9999888 899999999999999999999999887542 5667788999999
Q ss_pred cCCHHHHHHHHHhCCC--------CCCc-chHHHHHHHHHhcCChHHHHHHHHHHH
Q 040338 330 SGLLGEAKKLIDEMPS--------KPTC-VIWGALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 330 ~g~~~~A~~~~~~m~~--------~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
.+++.+|.++|.+... .|++ .+|..|...|.+.|++++|.++.+...
T Consensus 422 ~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 422 LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999987654 1443 479999999999999999999998876
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5e-09 Score=90.98 Aligned_cols=124 Identities=8% Similarity=0.008 Sum_probs=61.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
.....|+.+..-|....+...|+.-|+...+. .+.|-..|--|-.+|.-.+...-|+-.|++.....
T Consensus 362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k------------ 428 (559)
T KOG1155|consen 362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK------------ 428 (559)
T ss_pred chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC------------
Confidence 33445555555555555555555555555442 12244445555555555555555555555544432
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-CC--hhhHHHHHHHHHhcCCCCchHHH
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-RN--MISWMVLISAFSQAGVLEKPRFF 285 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~~~~~~li~~~~~~g~~~~a~~~ 285 (385)
+.|...|.+|.++|.+.+++++|+..|..... .| ...+..|...|-+.++.++|...
T Consensus 429 -----------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 429 -----------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred -----------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 23445555566666666666666666655543 12 24444444444444444444333
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=2.3e-07 Score=81.19 Aligned_cols=347 Identities=12% Similarity=0.095 Sum_probs=220.9
Q ss_pred CCChHHHHHHHHHHHHcccchhhHHh-----------hhhhHHHHHhhhC----CCChhhHHHHHHHHHhhhccCChHHH
Q 040338 7 LKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIG----PRYLFTYNTMINGGVRCLCVGNIKMA 71 (385)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~a 71 (385)
.+++..|++||++++.-. ..++.++ .+..|+.+|++.. +.|-. |-..+-. --..|++..|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ym---EE~LgNi~ga 160 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYM---EEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHH---HHHhcccHHH
Confidence 456788999999998765 3333333 8888999998654 33333 3333322 1227999999
Q ss_pred HHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHH
Q 040338 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILT 151 (385)
Q Consensus 72 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 151 (385)
.++|+.-.+ ..|+...|.+.|+.=.+...++.|..+|++..- .+|++.+|--....=.
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--------------------~HP~v~~wikyarFE~ 218 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--------------------VHPKVSNWIKYARFEE 218 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------------------ecccHHHHHHHHHHHH
Confidence 999998876 689999999999999999999999999987532 1477777766666666
Q ss_pred hCCCchHHHHHHHHHHHC-CC-CCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCCC-
Q 040338 152 RHGFGFETLCTFIELWNH-GF-GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLD-VFVGSGLIDMYLKCGCNG- 227 (385)
Q Consensus 152 ~~~~~~~a~~~~~~m~~~-g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~- 227 (385)
++|+...|..+|+...+. |- .-+...|.+....=.+.+.++.|.-+|...++.-++.. ...|..+..-=-+-|+..
T Consensus 219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence 777777777777766553 10 11222333333333345566666666666665533221 234444443333334333
Q ss_pred -------------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-------------------------
Q 040338 228 -------------------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R------------------------- 261 (385)
Q Consensus 228 -------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~------------------------- 261 (385)
.+.|-.+|--.++.--..|+.+...++|+.... |
T Consensus 299 IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555666666666666665542 1
Q ss_pred --------------------ChhhHHHH----HHHHHhcCCCCchHHHH-----------HHHHHHHHhcccCChhhHHH
Q 040338 262 --------------------NMISWMVL----ISAFSQAGVLEKPRFFF-----------FFVSLLSGCSHSGPVTKGKH 306 (385)
Q Consensus 262 --------------------~~~~~~~l----i~~~~~~g~~~~a~~~~-----------~~~~l~~~~~~~~~~~~a~~ 306 (385)
.-.||.-+ ..--.++.++..|.+++ +|-..|+.-.+.++++.+..
T Consensus 379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 11122211 11123445555555555 56666666667788888888
Q ss_pred HHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 040338 307 YFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTC----VIWGALLGACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 307 ~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
++++....++ ..++......-...|+.+.|..+|+-....|.. ..|.+.|..-...|.+++|..+++.+++...
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 8888888777 666677777777788888888888887776533 3566666666778888888888888876543
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=5.9e-08 Score=84.31 Aligned_cols=244 Identities=11% Similarity=0.003 Sum_probs=167.0
Q ss_pred HHHHhcCChhHHHHHHHhccCCCccccc---------------cchHHHHHHhcCCCCCCcchHHHHH-----HHHHhCC
Q 040338 95 DMHVKCGAVDYAESAFLRMLNPSLFCWK---------------FGIIRLLIMFQKMPERDLVSWNTMI-----SILTRHG 154 (385)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~---------------~~~~~a~~~~~~~~~~~~~~~~~li-----~~~~~~~ 154 (385)
.-|.+.|+++.|.++++-..+.+..+.. .++..|..+-+.- .+..-||.-. +...-+|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a--ln~dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA--LNIDRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH--hcccccCHHHhhcCCceeeecC
Confidence 3567899999999999888776543222 1222222222211 1222233221 1223468
Q ss_pred CchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhH
Q 040338 155 FGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQI 234 (385)
Q Consensus 155 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~ 234 (385)
++++|.+.|++.....-.-....|++=+ .+-..|++++|++.|-.+...- ..+..+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il-----------------------~nn~ev 560 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-----------------------LNNAEV 560 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-----------------------HhhHHH
Confidence 8888888888887654333344444333 3456678888888776654321 123344
Q ss_pred HHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccC
Q 040338 235 GKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSG 299 (385)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~ 299 (385)
.-.+.+.|-...+...|++++..... .|....+.|...|-+.|+-..|.+.. +..-+..-|....
T Consensus 561 l~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH
Confidence 45566667777788999999877654 47788888999999999999998877 6677788888899
Q ss_pred ChhhHHHHHHHHHhccc-hhhHHHHHHH-HHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCC
Q 040338 300 PVTKGKHYFTAMAKFTY-TCYFVCMVDL-LGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYN 364 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~~~-~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~ 364 (385)
-+++++..|++..-..+ ..-|..+|.. +.+.|++..|..+|+..-++ .|..+...|++.+...|.
T Consensus 641 f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999877766 6666666655 56699999999999998876 467788888888877764
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=1.7e-07 Score=80.22 Aligned_cols=265 Identities=11% Similarity=-0.017 Sum_probs=193.6
Q ss_pred hhhhHHHHHhhhCC---CChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHH
Q 040338 33 LIDDDYRVFCDIGP---RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 33 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
++.+|.++..+-.+ .....|-.-..+ ....|+.+.+-+++.+..+.--.++...+-+..+.....|+...|..-
T Consensus 99 ~~~qAEkl~~rnae~~e~p~l~~l~aA~A---A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 99 DFQQAEKLLRRNAEHGEQPVLAYLLAAEA---AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cHHHHHHHHHHhhhcCcchHHHHHHHHHH---HHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 78888888775442 223333333444 455899999999999998864456677777888889999999999998
Q ss_pred HHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-------hhHHHHH
Q 040338 110 FLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS-------MLYATAF 182 (385)
Q Consensus 110 ~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll 182 (385)
+++..+.+ +.++.+......+|.+.|++.....++..|.+.|+--|. .+|..++
T Consensus 176 v~~ll~~~-------------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL 236 (400)
T COG3071 176 VDQLLEMT-------------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL 236 (400)
T ss_pred HHHHHHhC-------------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 88876555 577889999999999999999999999999999865443 4566677
Q ss_pred HHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC-
Q 040338 183 SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR- 261 (385)
Q Consensus 183 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 261 (385)
.-....+..+.-...++..-+. .+. +...-.+++.-+..+|+.++|.++.++..+.
T Consensus 237 ~q~~~~~~~~gL~~~W~~~pr~-lr~----------------------~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~ 293 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQPRK-LRN----------------------DPELVVAYAERLIRLGDHDEAQEIIEDALKRQ 293 (400)
T ss_pred HHHhccccchHHHHHHHhccHH-hhc----------------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 6666666655545555554333 112 2233355667777888999999888776652
Q ss_pred -ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHH
Q 040338 262 -NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLL 327 (385)
Q Consensus 262 -~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~ 327 (385)
|.. ... .-.+.+.++...-++.. .+.++...|.+.+.|.+|...|+...+..+ ...|+.+..++
T Consensus 294 ~D~~-L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~ 371 (400)
T COG3071 294 WDPR-LCR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL 371 (400)
T ss_pred cChh-HHH-HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 333 111 11222333333332222 788999999999999999999999888888 99999999999
Q ss_pred HccCCHHHHHHHHHhCC
Q 040338 328 GLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 328 ~~~g~~~~A~~~~~~m~ 344 (385)
.+.|+..+|.++.++..
T Consensus 372 ~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 372 DQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHcCChHHHHHHHHHHH
Confidence 99999999999988764
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=6.1e-09 Score=87.28 Aligned_cols=199 Identities=12% Similarity=0.031 Sum_probs=153.6
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHH
Q 040338 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 219 (385)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------- 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------- 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------
Confidence 4567788899999999999999999998752 33567778888899999999999999999887643
Q ss_pred HHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccC
Q 040338 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299 (385)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~ 299 (385)
.+...+..+...+...|++++|...++...+.... .... -.+..+...+...|
T Consensus 97 ----------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--------------~~~~---~~~~~l~~~~~~~g 149 (234)
T TIGR02521 97 ----------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY--------------PQPA---RSLENAGLCALKAG 149 (234)
T ss_pred ----------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc--------------ccch---HHHHHHHHHHHHcC
Confidence 22345688889999999999999999988642100 0000 02333445566777
Q ss_pred ChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 300 PVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
++++|...+++..+..+ ...+..+...+...|++++|.+.+++.... .+...+..+...+...|+.++|..+.+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888888877766 667778899999999999999999987653 34566777888899999999999998888
Q ss_pred Hhcc
Q 040338 376 LQLD 379 (385)
Q Consensus 376 ~~~~ 379 (385)
....
T Consensus 230 ~~~~ 233 (234)
T TIGR02521 230 QKLF 233 (234)
T ss_pred HhhC
Confidence 7653
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=1.9e-08 Score=84.27 Aligned_cols=189 Identities=14% Similarity=0.062 Sum_probs=135.5
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
...+..+...+.. .|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.+
T Consensus 31 ~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLE---QGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN----------- 95 (234)
T ss_pred HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------
Confidence 3455566666555 899999999999988764 3356778888889999999999999998876554
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
+.+...+..+...+...|++++|...+++.......| ....+..+..++...|++++|.+.+++..+....
T Consensus 96 --------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 96 --------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred --------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3455677888888999999999999999988753223 3456666777888999999999999988876432
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchH
Q 040338 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPR 283 (385)
Q Consensus 208 ~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~ 283 (385)
+ ...+..+...+...|++++|...+++..+ | +...+..+...+...|+.++|.
T Consensus 168 -~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 168 -R----------------------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred -C----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 1 22345666777788899999999887754 2 3333444444444444444443
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=3.2e-08 Score=93.76 Aligned_cols=115 Identities=10% Similarity=-0.203 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHH
Q 040338 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147 (385)
Q Consensus 68 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 147 (385)
+++|...+++..+.. +-+...+..+...+...|++++|...|++..+.+ +.+...+..+.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------------------P~~~~a~~~lg 379 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------------------PISADIKYYYG 379 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------------CCCHHHHHHHH
Confidence 455555555555442 2234444445455555555555555555544433 23334455555
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCH-hhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 148 SILTRHGFGFETLCTFIELWNHGFGLSS-MLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
..+...|++++|+..+++..+. .|+. ..+..++..+...|++++|...+++..+.
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 5555555555555555555543 2221 11122222333345555555555554443
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.09 E-value=2.6e-09 Score=99.48 Aligned_cols=248 Identities=12% Similarity=-0.009 Sum_probs=167.6
Q ss_pred HHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHh
Q 040338 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR 152 (385)
Q Consensus 73 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 152 (385)
.++..+...|+.|+..||..+|.-||..|+++.|- +|.-|.-++. +-+...|+.++.+..+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL------------------pv~e~vf~~lv~sh~~ 71 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL------------------PVREGVFRGLVASHKE 71 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc------------------cccchhHHHHHhcccc
Confidence 56777888899999999999999999999999998 8888877665 4567788889888888
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh-------CCCCchHHHHHHHHHHHhcCC
Q 040338 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM-------EPSLDVFVGSGLIDMYLKCGC 225 (385)
Q Consensus 153 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~ 225 (385)
.++.+.+. .|-..||..|..+|...||+..-..+-+.|... |......-+-..+++ .
T Consensus 72 And~Enpk-----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c-----~ 135 (1088)
T KOG4318|consen 72 ANDAENPK-----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHC-----C 135 (1088)
T ss_pred cccccCCC-----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhccc-----C
Confidence 88877665 788889999999999998876532222223222 221111111111111 1
Q ss_pred CCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC---------------ChhhHHHHHHHHHhcCCCCchHHHHHHHH
Q 040338 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR---------------NMISWMVLISAFSQAGVLEKPRFFFFFVS 290 (385)
Q Consensus 226 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 290 (385)
...-||. .+.+.-....|-++.+++++..++.. +...+..|.. +|+.+. ++....+|..
T Consensus 136 p~~lpda---~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~-~cksl~--e~~~s~~l~a 209 (1088)
T KOG4318|consen 136 PHSLPDA---ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLN-MCKSLV--EAPTSETLHA 209 (1088)
T ss_pred cccchhH---HHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHH-HHHHhh--cCCChHHHHH
Confidence 1122332 34455555666777777777666531 1112222222 222221 1333338899
Q ss_pred HHHHhcccCChhhHHHHHHHHHhccc---hhhHHHHHHHHHccCCHHHHHHHHHhCCCC---CCcchHHHHHHHHHhcCC
Q 040338 291 LLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK---PTCVIWGALLGACCSHYN 364 (385)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~li~~~~~~g~ 364 (385)
++.+-..+|+.+.|..++.+|++.|+ ...|-.|+-+ .++..-++.+++.|.+. |+..|+...+..+.+.|.
T Consensus 210 ~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 210 VLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999999999999999 4445555554 88888888888888774 999999988888877544
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=6.1e-08 Score=88.34 Aligned_cols=246 Identities=13% Similarity=0.048 Sum_probs=169.8
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHHHHHh-----c-cCCCch-HHHhHHHHHHhcCChhHHHHHHHhccCCCccccccc
Q 040338 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKF-----Y-FVSDES-IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG 124 (385)
Q Consensus 52 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 124 (385)
...+-..|.. .|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++...
T Consensus 202 ~~~La~~y~~---~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 202 LRNLAEMYAV---QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHH---hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 3335555444 99999999999998875 2 123332 3344667888899999999999775321
Q ss_pred hHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-----CC-CCCHh-hHHHHHHHhcCccCccchhhH
Q 040338 125 IIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH-----GF-GLSSM-LYATAFSARASVYDLEWGPHL 197 (385)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~-t~~~ll~~~~~~~~~~~a~~~ 197 (385)
-..+|.++.+.-..+++.|-..|.+.|++++|...+++..+. |. .|... -++.+...|...+++++|..+
T Consensus 271 ---~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 271 ---REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred ---HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 111222333334567888889999999999998888776432 32 33333 356677788999999999999
Q ss_pred HHHHHHhC---CCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC-----------Ch
Q 040338 198 HSRVVHME---PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR-----------NM 263 (385)
Q Consensus 198 ~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------~~ 263 (385)
++...+.- +.++. ..-..+++.|...|.+.|++++|++++++.... ..
T Consensus 348 ~q~al~i~~~~~g~~~------------------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDN------------------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHHhhccccc------------------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 98766541 11211 123457788999999999999999999988641 12
Q ss_pred hhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHH
Q 040338 264 ISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLID 341 (385)
Q Consensus 264 ~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 341 (385)
.+++.|...|.+.+++.+|.++| .++..+........+ ..+|..|...|.+.|++++|.++.+
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~---------------~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLF---------------EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHH---------------HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 45666777777777777777765 444444411111222 7788889999999999999999987
Q ss_pred hCC
Q 040338 342 EMP 344 (385)
Q Consensus 342 ~m~ 344 (385)
...
T Consensus 475 ~~~ 477 (508)
T KOG1840|consen 475 KVL 477 (508)
T ss_pred HHH
Confidence 765
No 59
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=5e-07 Score=81.12 Aligned_cols=195 Identities=10% Similarity=0.031 Sum_probs=128.4
Q ss_pred ccccCCChHHHHHHHHHHHHcccchhhHHh----------hhhhHHHHHhhhCCCChhhHHHH--HHHHHhhhccCChHH
Q 040338 3 ACGSLKSLPIARKIHAQLISTCLISSIFLQ----------LIDDDYRVFCDIGPRYLFTYNTM--INGGVRCLCVGNIKM 70 (385)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~~~~ 70 (385)
-+...|++++|.++-..+...+..+..... ++++|..+.+.-. -..+++.. =.+||.+ +.+..++
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~--~~~~~~~~~fEKAYc~Y-rlnk~De 97 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG--ALLVINSFFFEKAYCEY-RLNKLDE 97 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc--hhhhcchhhHHHHHHHH-HcccHHH
Confidence 356789999999999999998744433333 8999997766522 22233333 5677653 3699999
Q ss_pred HHHHHHHHHHhccCCCc-hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccc----------cchHHHHHHhcCCCCCC
Q 040338 71 ALHLHGLVKKFYFVSDE-SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK----------FGIIRLLIMFQKMPERD 139 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----------~~~~~a~~~~~~~~~~~ 139 (385)
|+..++ |..++. .+...-...+-+.|++++|..+|+.+.+.+..... +....+. +.+..+...
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVP 171 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCC
Confidence 999887 344433 35556667888999999999999999776653333 1111111 344444434
Q ss_pred cchHHHHHH---HHHhCCCchHHHHHHHHHHHCC-------------CCCCHhhH-HHHHHHhcCccCccchhhHHHHHH
Q 040338 140 LVSWNTMIS---ILTRHGFGFETLCTFIELWNHG-------------FGLSSMLY-ATAFSARASVYDLEWGPHLHSRVV 202 (385)
Q Consensus 140 ~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~ 202 (385)
..+|..+-+ .+...|++.+|+++++...+.| +.-...+. ..+...+-..|+.++|..++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 556665553 4567899999999999883221 11111222 234555678899999999999999
Q ss_pred HhCC
Q 040338 203 HMEP 206 (385)
Q Consensus 203 ~~~~ 206 (385)
+...
T Consensus 252 ~~~~ 255 (652)
T KOG2376|consen 252 KRNP 255 (652)
T ss_pred HhcC
Confidence 8865
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.06 E-value=1.7e-08 Score=95.65 Aligned_cols=245 Identities=8% Similarity=-0.075 Sum_probs=157.8
Q ss_pred CchHHHhHHHHHHh-----cCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHH---------
Q 040338 86 DESIAKSSIDMHVK-----CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILT--------- 151 (385)
Q Consensus 86 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~--------- 151 (385)
+...|...+++-.. .+.+++|...|++..+.+ +.+...|..+..++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------------------P~~a~a~~~La~~~~~~~~~g~~~ 315 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------------------PNSIAPYCALAECYLSMAQMGIFD 315 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------------------CccHHHHHHHHHHHHHHHHcCCcc
Confidence 44555555554322 134567778887776655 234555665555443
Q ss_pred hCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCc
Q 040338 152 RHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIES 230 (385)
Q Consensus 152 ~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~ 230 (385)
..+++++|...+++..+. .| +...+..+...+...|++++|...+++.++.++.
T Consensus 316 ~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~----------------------- 370 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI----------------------- 370 (553)
T ss_pred cchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----------------------
Confidence 234478999999998875 45 5667777777888899999999999999887632
Q ss_pred hhhHHHHHHHHHHcCCChhHHHHHHHhccc--CCh-hhHHHHHHHHHhcCCCCchHHHH-------------HHHHHHHH
Q 040338 231 SIQIGKALVTMYAEGGSTQKADLAFELMSR--RNM-ISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSG 294 (385)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~a~~~~-------------~~~~l~~~ 294 (385)
+...+..+...+...|++++|+..+++..+ |+. ..+..+...+...|++++|+..+ .+..+..+
T Consensus 371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 223446667778888899999999998876 432 23333444566677777777666 34556666
Q ss_pred hcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC----CCcchHHHHHHHHHhcCChHHH
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----PTCVIWGALLGACCSHYNTKLA 368 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~li~~~~~~g~~~~a 368 (385)
+...|+.++|...+.++....+ ....+.+...|+..| +.|...++.+.+. |....+ +-..|.-.|+.+.+
T Consensus 451 l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~ 526 (553)
T PRK12370 451 LSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAE 526 (553)
T ss_pred HHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHH
Confidence 6778888888888877666555 444555566666666 4666666665542 333333 33335555666665
Q ss_pred HHHHHHHHhcc
Q 040338 369 ELVMRNLLQLD 379 (385)
Q Consensus 369 ~~~~~~~~~~~ 379 (385)
..+ +++.+.+
T Consensus 527 ~~~-~~~~~~~ 536 (553)
T PRK12370 527 KMW-NKFKNED 536 (553)
T ss_pred HHH-HHhhccc
Confidence 555 7666554
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.04 E-value=2.7e-06 Score=77.52 Aligned_cols=297 Identities=10% Similarity=0.028 Sum_probs=140.4
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhc----cCCCccccccchHHHHHHhcCCCCCCc
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRM----LNPSLFCWKFGIIRLLIMFQKMPERDL 140 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (385)
..-++.|.++++...+. ++-+..+|.+-...=-.+|+.+.+.++.++- ...|+ .-+.
T Consensus 419 LetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv------------------~i~r 479 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV------------------EINR 479 (913)
T ss_pred HHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce------------------eecH
Confidence 56666777777766654 4556666666666556667777776666543 12222 2233
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 218 (385)
..|-.=...|-..|..--+..+......-|+.-. ..|+..-...|.+.+.++-|..+|...++- ++.+..+|.....
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~ 558 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAM 558 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHH
Confidence 3333333334444444444444444444443321 234444444444445555555555444443 2223333333322
Q ss_pred HHHhcCCCC------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchH
Q 040338 219 MYLKCGCNG------------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPR 283 (385)
Q Consensus 219 ~~~~~g~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~ 283 (385)
.--..|..+ ++.....|-.....+-..|++..|..++....+ | +...|-.-+..-.....+++|.
T Consensus 559 ~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHH
Confidence 222222111 223333444444555555666666666665544 2 3344555555555555666666
Q ss_pred HHH-----------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCc
Q 040338 284 FFF-----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTC 349 (385)
Q Consensus 284 ~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~ 349 (385)
.+| .|..-+..---.++.++|.+++++..+..+ ...|..+.+.+-+.++++.|.+.|..=... |+.
T Consensus 639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 665 333333333444555666666665555555 455555555555555555555544433322 322
Q ss_pred c-hHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 350 V-IWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 350 ~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
. .|-.|...--+.|..-+|..++++..-.+|+
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 2 3333333333444444444444444444433
No 62
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.04 E-value=2e-06 Score=78.39 Aligned_cols=291 Identities=11% Similarity=0.031 Sum_probs=191.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|..++...++++.+..- +-....|-.....+...|++..|..++.+.-+.+ +.+...|-
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-------------------pnseeiwl 622 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-------------------PNSEEIWL 622 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-------------------CCcHHHHH
Confidence 455555555555555431 2223333333444444555555555555443333 23667788
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
+-+..-..+.+++.|..+|.+... ..|+...|.--++.-.-.+..++|.+++++.++.- +.=...|-.+-..+-+.+
T Consensus 623 aavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHH
Confidence 888888888889999988888765 56777777666666666778888888888887763 222334433333343333
Q ss_pred CCC------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH---
Q 040338 225 CNG------------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF--- 286 (385)
Q Consensus 225 ~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~--- 286 (385)
+.+ ++..+..|-.|.+.--+.|.+-.|..+++.-.- | |...|-..|..=.+.|..+.|..+.
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333 566677777777777788888888888886653 3 5678888888888888888887666
Q ss_pred ---------HHHHHHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHH
Q 040338 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGA 354 (385)
Q Consensus 287 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~ 354 (385)
.|...|....+.++-.++..-++ +... +.+...+...+-...+++.|.+.|++.... | +..+|.-
T Consensus 780 LQecp~sg~LWaEaI~le~~~~rkTks~DALk---kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 780 LQECPSSGLLWAEAIWLEPRPQRKTKSIDALK---KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred HHhCCccchhHHHHHHhccCcccchHHHHHHH---hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 45555555444444333333222 2222 555666667777788899999999988764 4 4668999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 355 LLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 355 li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
+...+..+|.-+.-.++++......|.
T Consensus 857 fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 999999999888888898888876664
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=8.3e-09 Score=85.82 Aligned_cols=210 Identities=12% Similarity=0.011 Sum_probs=156.9
Q ss_pred HhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 040338 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170 (385)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 170 (385)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-..|.+-.+++.|+.+|.+-.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--------------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~- 285 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--------------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS- 285 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--------------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-
Confidence 56778999999999999998775443 366678989999999999999999999988764
Q ss_pred CCCCHhhH-HHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChh
Q 040338 171 FGLSSMLY-ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQ 249 (385)
Q Consensus 171 ~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~ 249 (385)
-|-.+|| .-+.+.+-..++.++|.++++...+... .++....++...|.-.++.+
T Consensus 286 -fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~-----------------------~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 286 -FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP-----------------------INVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred -CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-----------------------ccceeeeeeeeccccCCChH
Confidence 5656665 4577788889999999999999988743 23444456667788888999
Q ss_pred HHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH---------------HHHHHHHHhcccCChhhHHHHHHHH
Q 040338 250 KADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF---------------FFVSLLSGCSHSGPVTKGKHYFTAM 311 (385)
Q Consensus 250 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~~ 311 (385)
-|+..|..+.+ .+...|+.+.-.|.-.+++|-++--| .|-++-......||...|.+.|.-.
T Consensus 342 ~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 99999998876 46778888888887888887776555 5555555556666666666666666
Q ss_pred Hhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 312 AKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 312 ~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
...+. ...++.|.-.-.+.|++++|..++.....
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 55555 55666666666666666666666665554
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.9e-07 Score=80.80 Aligned_cols=192 Identities=9% Similarity=-0.015 Sum_probs=118.4
Q ss_pred hcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC------------CCchhhHHHHHHHHHHcCCChhHHH
Q 040338 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------------IESSIQIGKALVTMYAEGGSTQKAD 252 (385)
Q Consensus 185 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------------~~~~~~~~~~li~~~~~~g~~~~A~ 252 (385)
+.-.|+.-.+..-|+..+.....++.. |-.+..+|....+.. .+.+..+|..=..++.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 344566666666666666654443331 333333333333222 3344455555556666666778888
Q ss_pred HHHHhcccC---ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc-
Q 040338 253 LAFELMSRR---NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY- 316 (385)
Q Consensus 253 ~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 316 (385)
.=|++-+.- ++..|--+--+..+.++++++...| .|+...+.+...++++.|.+.|+......+
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 878777652 4455655666666777777777777 788888888888888888888887766544
Q ss_pred --------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 317 --------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 317 --------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
.+...--+-.+--.+++..|.++++...+- | ....|.+|...-...|+.++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111111111222347778888888777663 3 344678888888888888888888877543
No 65
>PF12854 PPR_1: PPR repeat
Probab=98.94 E-value=1.2e-09 Score=60.34 Aligned_cols=34 Identities=29% Similarity=0.109 Sum_probs=30.7
Q ss_pred hccCCCchHHHhHHHHHHhcCChhHHHHHHHhcc
Q 040338 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRML 114 (385)
Q Consensus 81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (385)
+|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999884
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.91 E-value=1.6e-06 Score=80.12 Aligned_cols=272 Identities=13% Similarity=0.046 Sum_probs=147.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|++.++.-.+. +.............+.+.|+.++|..+|..+.+.| +.|..-|.
T Consensus 17 ~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------------------Pdn~~Yy~ 76 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------------------PDNYDYYR 76 (517)
T ss_pred CCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------------CCcHHHHH
Confidence 78888888888765443 33344556667788888888888888888887776 23444444
Q ss_pred HHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCc-cchhhHHHHHHHhCCCCc---------
Q 040338 145 TMISILTRH-----GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL-EWGPHLHSRVVHMEPSLD--------- 209 (385)
Q Consensus 145 ~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~--------- 209 (385)
.+..+.... ...+....+|+++... -|.......+.-.+.....+ ..+...+..+.+.|+++-
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK 154 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence 454444222 2456667777777654 23333332222122221122 123344444555554221
Q ss_pred ----hHHHHHHHHHHHhcC----CC-------CCCchhhHH--HHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHH
Q 040338 210 ----VFVGSGLIDMYLKCG----CN-------GIESSIQIG--KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISA 272 (385)
Q Consensus 210 ----~~~~~~li~~~~~~g----~~-------~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 272 (385)
..+.-.++..|...- .. .-+|+...| ..+...|-..|++++|++++++..+.++.. ++
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~----~e- 229 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL----VE- 229 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HH-
Confidence 111112222222111 00 012333222 333444445555555555555444321110 00
Q ss_pred HHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCCC---
Q 040338 273 FSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP--- 347 (385)
Q Consensus 273 ~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--- 347 (385)
.|..-...+.+.|++.+|...++.....+. ...-+-.+..+.++|++++|.+++.......
T Consensus 230 --------------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 230 --------------LYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred --------------HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 344444555667777777788888777777 5555567777888888888888887765531
Q ss_pred Ccc------hH--HHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 348 TCV------IW--GALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 348 ~~~------~~--~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
-.. .| .....+|.+.|++..|++.|..+.+
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 11 3356778888888888777766543
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.87 E-value=6.7e-06 Score=74.88 Aligned_cols=340 Identities=14% Similarity=0.114 Sum_probs=198.9
Q ss_pred hhhhHHHHHhhhC-----CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHH
Q 040338 33 LIDDDYRVFCDIG-----PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107 (385)
Q Consensus 33 ~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 107 (385)
++-..++.|++.. ......|.-.|.-... .+-++-+.++++.-.+. ++..-+-.|..+++.+++++|.
T Consensus 117 ~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~---~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 117 LITRTRRTFDRALRALPVTQHDRIWDLYLKFVES---HGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHh---CCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH
Confidence 5556666666433 2234567777766444 78888999999888763 4444677888999999999999
Q ss_pred HHHHhccCCCccccc------cchHHHHH----------------HhcCCCC--CC--cchHHHHHHHHHhCCCchHHHH
Q 040338 108 SAFLRMLNPSLFCWK------FGIIRLLI----------------MFQKMPE--RD--LVSWNTMISILTRHGFGFETLC 161 (385)
Q Consensus 108 ~~~~~m~~~~~~~~~------~~~~~a~~----------------~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~ 161 (385)
+.+......+.+.-. .-+.+--+ ++..+.. +| ...|++|.+.|.+.|.+++|-+
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999888655432211 11111111 1111111 22 2358999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhcCccC----------------------ccchhhHHHHHHHhCC-----------CC
Q 040338 162 TFIELWNHGFGLSSMLYATAFSARASVYD----------------------LEWGPHLHSRVVHMEP-----------SL 208 (385)
Q Consensus 162 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~~-----------~~ 208 (385)
+|++.... ..+..-|+.+.++|..-.. ++....-|+.+...++ +.
T Consensus 270 vyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 270 VYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 99998764 3455556666666543211 1111122222222211 01
Q ss_pred chHHHHHHHHHHHhcC--------------CCC--CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChh-------h
Q 040338 209 DVFVGSGLIDMYLKCG--------------CNG--IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI-------S 265 (385)
Q Consensus 209 ~~~~~~~li~~~~~~g--------------~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------~ 265 (385)
++..|..-+..+-... ++. +..-...|..+.+.|-..|+++.|..+|++..+-+-. +
T Consensus 348 nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 348 NVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred cHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 1111111111111000 000 2222456778888899999999999999988763222 2
Q ss_pred HHHHHHHHHhcCCCCchHHHH------------------------------HHHHHHHHhcccCChhhHHHHHHHHHhcc
Q 040338 266 WMVLISAFSQAGVLEKPRFFF------------------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315 (385)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~------------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (385)
|..-.+.=.++.+++.|+.+. .|...++.--..|-++....+++++....
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 333333333445556666555 55555555556678888888888888876
Q ss_pred c--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC---CCcc-hHHHHHHHHHh---cCChHHHHHHHHHHHhccccC
Q 040338 316 Y--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK---PTCV-IWGALLGACCS---HYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 316 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~-~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~ 382 (385)
. +.+.....-.+-...-++++.++|++-..- |++. .|++.+.-+.+ ....+.|..+|++.++ +++|
T Consensus 508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 6 333333333444556678888888877652 5543 46655544333 3467889999999888 4433
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.85 E-value=1.1e-06 Score=76.42 Aligned_cols=228 Identities=11% Similarity=-0.026 Sum_probs=139.8
Q ss_pred cCChHHHHHHHHHHHHhcc-CCC--chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcc
Q 040338 65 VGNIKMALHLHGLVKKFYF-VSD--ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV 141 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~-~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (385)
.+..+.++.-+.++..... .|+ ...|..+...|.+.|+.++|...|++..+.+ +.+..
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------------------P~~~~ 99 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------------------PDMAD 99 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------------------CCCHH
Confidence 3555677777777775421 222 3457777778888899999988888876655 35677
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 220 (385)
.|+.+...+...|++++|...|++..+. .| +..++..+..++...|++++|.+.++...+..+... ..
T Consensus 100 a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~--~~------- 168 (296)
T PRK11189 100 AYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP--YR------- 168 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HH-------
Confidence 8888888999999999999999888864 55 356677777778888999999999988887653211 00
Q ss_pred HhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccC
Q 040338 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299 (385)
Q Consensus 221 ~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~ 299 (385)
..........++.++|...|++.... +...|. ........|+..++. .+ ..+..+
T Consensus 169 ---------------~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~~-~~--~~~~~~----- 224 (296)
T PRK11189 169 ---------------ALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEET-LM--ERLKAG----- 224 (296)
T ss_pred ---------------HHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHHH-HH--HHHHhc-----
Confidence 11111223456788888888654332 222222 122223344443321 10 011110
Q ss_pred ChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHH
Q 040338 300 PVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGA 354 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ 354 (385)
++...+.+. ...|.-+...+.+.|++++|...|++.... ||.+-+..
T Consensus 225 --------~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 225 --------ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred --------CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 000011111 456777778888888888888888877653 35444444
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=3.4e-06 Score=77.99 Aligned_cols=227 Identities=7% Similarity=-0.121 Sum_probs=141.3
Q ss_pred hhhhHHHHHhhhC--CCChhhHH-HHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhc-----CChh
Q 040338 33 LIDDDYRVFCDIG--PRYLFTYN-TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKC-----GAVD 104 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~~~~~~~-~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~ 104 (385)
++++|...++.-. -+|..+|. ..-..+.+ .|+.++|..++..+.+.+. .|..-|..+..+..-. ...+
T Consensus 19 ~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~k---Lg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~~~~ 94 (517)
T PF12569_consen 19 DYEEALEHLEKNEKQILDKLAVLEKRAELLLK---LGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDEDVE 94 (517)
T ss_pred CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccccccHH
Confidence 6777777776544 45655554 44444444 8999999999999999862 2444455555555332 2467
Q ss_pred HHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCch-HHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040338 105 YAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF-ETLCTFIELWNHGFGLSSMLYATAFS 183 (385)
Q Consensus 105 ~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~t~~~ll~ 183 (385)
...++|+++....+ ...+.-.+.-.+.....+. .+..++..+...|+++ +|+.|-.
T Consensus 95 ~~~~~y~~l~~~yp--------------------~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~ 151 (517)
T PF12569_consen 95 KLLELYDELAEKYP--------------------RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKP 151 (517)
T ss_pred HHHHHHHHHHHhCc--------------------cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHH
Confidence 77788887754432 1111111111111112232 4556667777788654 4555555
Q ss_pred HhcCccCccchhhHHHHHHHhC--------------CCCchH--HHHHHHHHHHhcCCCC-----------CCch-hhHH
Q 040338 184 ARASVYDLEWGPHLHSRVVHME--------------PSLDVF--VGSGLIDMYLKCGCNG-----------IESS-IQIG 235 (385)
Q Consensus 184 ~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~--~~~~li~~~~~~g~~~-----------~~~~-~~~~ 235 (385)
.|.......-..+++....... -.|+.. ++.-+...|...|+.+ ..|+ +..|
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely 231 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELY 231 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 5665555555556666555331 124443 3455567788888777 5555 6788
Q ss_pred HHHHHHHHcCCChhHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCCchHHHH
Q 040338 236 KALVTMYAEGGSTQKADLAFELMSRR---NMISWMVLISAFSQAGVLEKPRFFF 286 (385)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 286 (385)
..-.+.+-+.|++.+|.+.++...+- |-..-+-.+..+.++|+.++|.+++
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88899999999999999999988764 4445555666677777777776654
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.6e-06 Score=74.27 Aligned_cols=254 Identities=9% Similarity=-0.056 Sum_probs=117.8
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 165 (385)
+......-.+-+-..+++++..++++...+.+ +++...+-.=|.++...|+..+-..+=.+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-------------------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~ 303 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-------------------PFHLPCLPLHIACLYELGKSNKLFLLSHK 303 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-------------------CCCcchHHHHHHHHHHhcccchHHHHHHH
Confidence 34444444445555566666666666655544 34445555555566666665555555555
Q ss_pred HHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC------------CCchhh
Q 040338 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------------IESSIQ 233 (385)
Q Consensus 166 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------------~~~~~~ 233 (385)
|.+. .+-...+|-.+.--|...|...+|.+.|.........-. ..|-..-+.|.-.|..+ .+....
T Consensus 304 LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl 381 (611)
T KOG1173|consen 304 LVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL 381 (611)
T ss_pred HHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc
Confidence 5543 222445555555555555666666666665544322110 11111111111111000 000000
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHH
Q 040338 234 IGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTA 310 (385)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 310 (385)
-+--+.--|.+.++++.|.+.|..... | |+...+.+.-.....+.+.+|. ..|+.
T Consensus 382 P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~----------------------~~f~~ 439 (611)
T KOG1173|consen 382 PSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEAL----------------------KYFQK 439 (611)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHH----------------------HHHHH
Confidence 001122334444555555555544432 2 3334444433333444444444 44443
Q ss_pred HHhc----cc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 040338 311 MAKF----TY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 311 ~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 379 (385)
.... +. .++++-|..+|.+.+++++|+..++..... .+..+|.++.-.|...|+++.|...|.+.+-..
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 3310 00 344555566666666666666666555442 345555555555666666666666666555554
Q ss_pred ccC
Q 040338 380 VKV 382 (385)
Q Consensus 380 ~~~ 382 (385)
|.+
T Consensus 520 p~n 522 (611)
T KOG1173|consen 520 PDN 522 (611)
T ss_pred Ccc
Confidence 443
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=8.9e-08 Score=79.82 Aligned_cols=214 Identities=7% Similarity=-0.080 Sum_probs=177.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 223 (385)
+-+-.+|.+.|.+.+|.+.|+.-.+. .|-..||..|-+.|.+..+.+.|+.++.+-++.- |-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~---------- 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTY---------- 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--Cchhhh----------
Confidence 45788999999999999999988775 6777889999999999999999999999887752 333332
Q ss_pred CCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCCchHHHH------------HH
Q 040338 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR---NMISWMVLISAFSQAGVLEKPRFFF------------FF 288 (385)
Q Consensus 224 g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~------------~~ 288 (385)
..-+.+.+-..++.++|.++|+...+. ++.....+...|.-.++++-|+.++ .|
T Consensus 293 -----------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 293 -----------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred -----------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 344556666677999999999988763 5666666777888899999999988 89
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHh
Q 040338 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCS 361 (385)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~ 361 (385)
+++.-+|.-.++++.+..-|.+....-. ..+|-.+.....-.|++..|.+-|+-.... .+...++.|.-.-.+
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR 441 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh
Confidence 9999999999999999999988765333 777877888888999999999999887764 456789999998999
Q ss_pred cCChHHHHHHHHHHHhccccC
Q 040338 362 HYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 362 ~g~~~~a~~~~~~~~~~~~~~ 382 (385)
.|+.++|..++....+..|.-
T Consensus 442 ~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 442 SGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred cCchHHHHHHHHHhhhhCccc
Confidence 999999999999998877753
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=9.9e-06 Score=73.10 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=62.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCC---Cccccc--------
Q 040338 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP---SLFCWK-------- 122 (385)
Q Consensus 54 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~-------- 122 (385)
.++.-+.+....+++++|.+....+...+ +-+...+..=+-++.+.+++++|+.+.+.-... +.+.+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 44444445555777888888887777765 334555566666677777788877665432210 111001
Q ss_pred cchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 123 FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
+..++|++.+..+.+.|..+-..-...+.+.|++++|+++|+.+.+.
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44444444444333333334444445555666666666666666554
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=6.4e-07 Score=78.75 Aligned_cols=138 Identities=12% Similarity=0.053 Sum_probs=102.1
Q ss_pred cCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHH
Q 040338 244 EGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYF 308 (385)
Q Consensus 244 ~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~ 308 (385)
-.|+.-.|..-|+..++ | +...|--+...|....+..+-...| +|..-.....-.+++++|..=|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554 1 2233555666677777666666666 6666666677777788888888
Q ss_pred HHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 309 TAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT-CVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 309 ~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
++.....+ ...|..+..+.-+.+++++++..|++.+.+ |+ +..|+.+...+...++++.|.+.|+..+++.+.
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 88877777 555666666777888999999999999887 65 457899999999999999999999999888776
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.75 E-value=2.4e-06 Score=74.39 Aligned_cols=194 Identities=10% Similarity=-0.039 Sum_probs=117.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 219 (385)
..|..+...|...|++++|...|++..+. .| +...|+.+...+...|++++|...|+..++..+ +
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~---------- 130 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP--T---------- 130 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--C----------
Confidence 34566666667777777777777776664 33 456666677777777777777777777766432 1
Q ss_pred HHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhh-HHHHHHHHHhcCCCCchHHHHHHHHHHHHhccc
Q 040338 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS-WMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298 (385)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~ 298 (385)
+..+|..+...+...|++++|.+.|+...+.+... +..+ | ...+...
T Consensus 131 -----------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~------------------~---~~l~~~~ 178 (296)
T PRK11189 131 -----------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL------------------W---LYLAESK 178 (296)
T ss_pred -----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------------H---HHHHHcc
Confidence 23345666667777777777777776665421111 1110 0 0112234
Q ss_pred CChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCC---CC-----C-CcchHHHHHHHHHhcCChHHHH
Q 040338 299 GPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMP---SK-----P-TCVIWGALLGACCSHYNTKLAE 369 (385)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-----p-~~~~~~~li~~~~~~g~~~~a~ 369 (385)
++.++|...+++.........+. ........|+.+++ +.++.+. +. | ....|..+...+...|++++|.
T Consensus 179 ~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 179 LDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred CCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 56788888886654432322222 22333345555443 2333332 21 1 2357899999999999999999
Q ss_pred HHHHHHHhccccC
Q 040338 370 LVMRNLLQLDVKV 382 (385)
Q Consensus 370 ~~~~~~~~~~~~~ 382 (385)
..|++..+.+|.+
T Consensus 257 ~~~~~Al~~~~~~ 269 (296)
T PRK11189 257 ALFKLALANNVYN 269 (296)
T ss_pred HHHHHHHHhCCch
Confidence 9999999988754
No 75
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=2.1e-08 Score=55.39 Aligned_cols=31 Identities=32% Similarity=0.349 Sum_probs=28.7
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
+||..|||+||.+||+.|+.++|.++|++|.
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 7999999999999999999999999999984
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=3.3e-06 Score=78.00 Aligned_cols=129 Identities=11% Similarity=0.081 Sum_probs=90.4
Q ss_pred HHHHHcCCChhHHHHHHHhcccCCh--hhHHHHHHHHHhcCCCCchHHHH----HHHHHHHHhcccCChhhHHHHHHHHH
Q 040338 239 VTMYAEGGSTQKADLAFELMSRRNM--ISWMVLISAFSQAGVLEKPRFFF----FFVSLLSGCSHSGPVTKGKHYFTAMA 312 (385)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~li~~~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (385)
+.+-.....|.+|+.+++.+++.++ .-|..+...|...|+++.|.++| .++-.|..|.+.|+|+.|.++-++..
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 3444556788899999998887654 34677888999999999999999 88999999999999999999877754
Q ss_pred hccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 040338 313 KFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMR 373 (385)
Q Consensus 313 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 373 (385)
.... ...|.+-..-+-+.|++.+|.++|-.+.+ |+. .|..|-++|..+..+++.+
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-PDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-chH-----HHHHHHhhCcchHHHHHHH
Confidence 4333 55555555566677777777777655443 221 3444444444444444443
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.66 E-value=9.3e-05 Score=67.72 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=64.7
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc------hhhHHHHHHHHHccCCHHHHHHHHHhCCCCC-------------
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP------------- 347 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p------------- 347 (385)
.|..+...|-..|+++.|+.+|++..+.+. ..+|....++-.+..+++.|.++.+....-|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 667777777778888888888888777665 4555556666667777788887777664421
Q ss_pred -------CcchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 348 -------TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 348 -------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
+...|+..+...-..|-++....++++++++.+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 1234556666666667777777777777776654
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.65 E-value=3.2e-05 Score=69.54 Aligned_cols=256 Identities=12% Similarity=-0.080 Sum_probs=154.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh----cCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCC-
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK----CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD- 139 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~- 139 (385)
.|++++|.+.++...+.. +.+...+.. ...+.. .+....+.+.++.. .+. .|+
T Consensus 56 ~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~-------------------~~~~ 113 (355)
T cd05804 56 AGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APE-------------------NPDY 113 (355)
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcC-------------------CCCc
Confidence 799999999999998863 334444442 222222 34555555555431 111 232
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC-CchHHHHHHHH
Q 040338 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS-LDVFVGSGLID 218 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 218 (385)
......+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++........ |+.
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~-------- 184 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML-------- 184 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch--------
Confidence 3344456678889999999999999998852 334567778888999999999999999998875432 111
Q ss_pred HHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCCh--hhHH------HHHHHHHhcCCCCchHHHHHHHH
Q 040338 219 MYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM--ISWM------VLISAFSQAGVLEKPRFFFFFVS 290 (385)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~------~li~~~~~~g~~~~a~~~~~~~~ 290 (385)
....|..+...+...|++++|..++++...++. .... .++.-+...|....+.
T Consensus 185 ------------~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~------- 245 (355)
T cd05804 185 ------------RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD------- 245 (355)
T ss_pred ------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH-------
Confidence 112345667778889999999999999764321 2111 1122222233222211
Q ss_pred HHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--C---C------cchHHHHHHH
Q 040338 291 LLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--P---T------CVIWGALLGA 358 (385)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p---~------~~~~~~li~~ 358 (385)
.++.+............ .........++...|+.++|..+++.+... . . +...-...-+
T Consensus 246 ---------~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 246 ---------RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred ---------HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 11111111111000011 222235677788899999999999887652 1 1 1122223334
Q ss_pred HHhcCChHHHHHHHHHHHhcc
Q 040338 359 CCSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 359 ~~~~g~~~~a~~~~~~~~~~~ 379 (385)
+...|+.++|.+.+.+.....
T Consensus 317 ~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 317 AFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 668899999999999887654
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=3.6e-05 Score=70.31 Aligned_cols=182 Identities=10% Similarity=-0.027 Sum_probs=119.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|+-++|......-.+..+ -+.+.|..+.-.+....+.++|++.|......+ +.|...|-
T Consensus 54 lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-------------------~dN~qilr 113 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-------------------KDNLQILR 113 (700)
T ss_pred ccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------------------CCcHHHHH
Confidence 6777888777666655432 255566666666666677888888887766554 46777777
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhhHHHHHHHhcCccCccchhhHHHHHHHhCC-CCchHHHHHHHHH---
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHMEP-SLDVFVGSGLIDM--- 219 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~--- 219 (385)
-|--.-.+.++++........+.+. .|+ ...|..+..+..-.|+...|..++++..+... .|+...|......
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 7666667788888888877777764 454 44566777788888999999999999988753 5666665544332
Q ss_pred ---HHhcCCCC------------CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHH
Q 040338 220 ---YLKCGCNG------------IESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMV 268 (385)
Q Consensus 220 ---~~~~g~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ 268 (385)
..+.|..+ +.-....-..-...+.+.+++++|..++..+.. ||..-|+.
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~ 257 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYE 257 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHH
Confidence 23334322 111222223445666777888888888888876 44444443
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.62 E-value=5.4e-06 Score=66.14 Aligned_cols=181 Identities=11% Similarity=-0.003 Sum_probs=133.0
Q ss_pred HHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHh
Q 040338 178 YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFEL 257 (385)
Q Consensus 178 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 257 (385)
..-|.-.|...|+...|.+-+++.+++.+ .+..+|..+...|.+.|..+.|.+.|++
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-----------------------s~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-----------------------SYYLAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----------------------ccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 33455567777777777777777766542 1223445555566666677777777776
Q ss_pred ccc---CChhhHHHHHHHHHhcCCCCchHHHH--------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hh
Q 040338 258 MSR---RNMISWMVLISAFSQAGVLEKPRFFF--------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TC 318 (385)
Q Consensus 258 m~~---~~~~~~~~li~~~~~~g~~~~a~~~~--------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 318 (385)
..+ .+....|....-+|..|++++|...| +|.++.-+..+.|+.+.|...|++..+..+ +.
T Consensus 95 Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 654 24456666666677777777777777 788888888888899999999999988888 88
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
....+.....+.|++-.|...++..... ++..+.-..|+.-.+.|+.+.+-+.=..+.+.-|.
T Consensus 175 ~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 175 ALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 8888899999999999999999988775 66667777777788889988888776666665543
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.61 E-value=1e-06 Score=75.80 Aligned_cols=132 Identities=13% Similarity=0.023 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHHhcccC-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHH
Q 040338 232 IQIGKALVTMYAEGGSTQKADLAFELMSRR-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTA 310 (385)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 310 (385)
.......+..|.+.++++.|.+.++.|.+- +..+..-+..++.. ...-...+.+|..+|++
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~------------------l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN------------------LATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH------------------HHHTTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH------------------HHhCchhHHHHHHHHHH
Confidence 344445566666666666666666666652 11222223333221 11112357888999999
Q ss_pred HHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCCh-HHHHHHHHHHHhcccc
Q 040338 311 MAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNT-KLAELVMRNLLQLDVK 381 (385)
Q Consensus 311 ~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~ 381 (385)
+..... +.+.+.+..+....|++++|.+++++...+ .+..+...++.+....|+. +.+.+.+.++.+..|.
T Consensus 193 l~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 193 LSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 988754 778888999999999999999999998764 3455666777777777877 6788899988877664
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.4e-05 Score=66.26 Aligned_cols=300 Identities=14% Similarity=0.044 Sum_probs=187.8
Q ss_pred hhhhHHHHHhhhCCCCh---hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhH-HHHHHhcCChhHHHH
Q 040338 33 LIDDDYRVFCDIGPRYL---FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS-IDMHVKCGAVDYAES 108 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~ 108 (385)
++++|.+++..-.++++ ...+.+-.+|-. ..++..|-..++++... .|...-|... ...+-+.+.+.+|++
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~---~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYR---LQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 89999998876554333 334444333333 68899999999999875 4555555432 355667889999999
Q ss_pred HHHhccCCC-cc-----------ccccchHHHHHHhcCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCC
Q 040338 109 AFLRMLNPS-LF-----------CWKFGIIRLLIMFQKMP-ERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLS 174 (385)
Q Consensus 109 ~~~~m~~~~-~~-----------~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~ 174 (385)
+...|.... .. ...+++..+..+.++.+ +.+..+-+...-...+.|+++.|++-|+...+- |..|
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp- 178 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP- 178 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-
Confidence 999887642 21 11177777777888877 355666666666667899999999999998775 4554
Q ss_pred HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHH----HHHHHHHHhcCCCC---CCchhhHHHHHHHHHHcCCC
Q 040338 175 SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG----SGLIDMYLKCGCNG---IESSIQIGKALVTMYAEGGS 247 (385)
Q Consensus 175 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~---~~~~~~~~~~li~~~~~~g~ 247 (385)
...|+..+ ++.+.|+.+.|.+...+++.+|++-.+..- +..++. ...|+.- ...-+..+|.-...+.+.|+
T Consensus 179 llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n 256 (459)
T KOG4340|consen 179 LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLVLHQSALVEAFNLKAAIEYQLRN 256 (459)
T ss_pred hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHHHHHHHHHHHhhhhhhhhhhccc
Confidence 56777665 667789999999999999998864221110 000000 0000000 01112334444455677899
Q ss_pred hhHHHHHHHhcccC-----ChhhHHHHHHHHHhcCCCCch---HHHH---------HHHHHHHHhcccCChhhHHHHHHH
Q 040338 248 TQKADLAFELMSRR-----NMISWMVLISAFSQAGVLEKP---RFFF---------FFVSLLSGCSHSGPVTKGKHYFTA 310 (385)
Q Consensus 248 ~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~a---~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~ 310 (385)
.+.|.+-+-.|+-+ |++|...+.-.=.. +++.+. ++++ ||..++-.||++.-++.|-.++.+
T Consensus 257 ~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 257 YEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 99999999999742 66666554433222 222222 2222 999999999999999988888876
Q ss_pred HHhccc---hhhHHHHHHHHHc-cCCHHHHHHHHH
Q 040338 311 MAKFTY---TCYFVCMVDLLGL-SGLLGEAKKLID 341 (385)
Q Consensus 311 ~~~~~~---~~~~~~li~~~~~-~g~~~~A~~~~~ 341 (385)
-...-. ....--|++++.. .-..++|.+-++
T Consensus 336 n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~ 370 (459)
T KOG4340|consen 336 NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLD 370 (459)
T ss_pred CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 544333 2222234444443 334555555443
No 83
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.5e-05 Score=71.67 Aligned_cols=183 Identities=11% Similarity=0.073 Sum_probs=127.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 220 (385)
..|-.....|+-.|..+.|+..|...-+. ++-..-.+-.+---|.+.+..+.|.++|.+.....+
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-------------- 411 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-------------- 411 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC--------------
Confidence 46888888888899999999888877653 222233344455567888899999999988876532
Q ss_pred HhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH--HHHHHHHHhccc
Q 040338 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--FFVSLLSGCSHS 298 (385)
Q Consensus 221 ~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~--~~~~l~~~~~~~ 298 (385)
.|....+-+.-.....+.+.+|...|.....+ |..-. .+-. .| +++.+..+|.+.
T Consensus 412 ---------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~--------ik~~~-----~e~~-~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 412 ---------SDPLVLHELGVVAYTYEEYPEALKYFQKALEV--------IKSVL-----NEKI-FWEPTLNNLGHAYRKL 468 (611)
T ss_pred ---------CcchhhhhhhheeehHhhhHHHHHHHHHHHHH--------hhhcc-----cccc-chhHHHHhHHHHHHHH
Confidence 23334455555566677899999999876521 11000 1111 22 667777777778
Q ss_pred CChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHh
Q 040338 299 GPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KPTCVIWGALLGACCS 361 (385)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~li~~~~~ 361 (385)
+..++|+..+++.....+ ..++.++.-.|...|+++.|...|++..- +|+-.+-+.++..+..
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 888888888888777777 88888888888889999999998888766 3776666666654433
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=4e-05 Score=65.10 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=72.2
Q ss_pred HHHHHhcccCChhhHHHHHHHHHhccc---hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcch-HHHHHHHHHhcCCh
Q 040338 290 SLLSGCSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI-WGALLGACCSHYNT 365 (385)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~-~~~li~~~~~~g~~ 365 (385)
.+..+++..|+..+|+++|-.+..... ......|.++|.++++++.|+.++-.+....+..+ ...+.+-|.+.+++
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 466677778899999999988766554 33345677889999999999999988876433333 44455788999999
Q ss_pred HHHHHHHHHHHhccccCC
Q 040338 366 KLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~ 383 (385)
--|-+.|+++...+|.|.
T Consensus 478 yyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 478 YYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHHhhhHHHccCCCcc
Confidence 999999999998888874
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00041 Score=66.90 Aligned_cols=113 Identities=14% Similarity=0.086 Sum_probs=86.5
Q ss_pred ChhhHHHHHHHHHhcCCCCchHHHH-------HHHHHHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCH
Q 040338 262 NMISWMVLISAFSQAGVLEKPRFFF-------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLL 333 (385)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 333 (385)
....|+.+..+-.+.|...+|++-| .|..++..+.+.|.+++..+.+....+... +.+-+.||-+|++.+++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRL 1182 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchH
Confidence 3467888888888999999999888 899999999999999999999998888877 88888899999999999
Q ss_pred HHHHHHHHhCCC-------------------C---CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 040338 334 GEAKKLIDEMPS-------------------K---PTCVIWGALLGACCSHYNTKLAELVMRN 374 (385)
Q Consensus 334 ~~A~~~~~~m~~-------------------~---p~~~~~~~li~~~~~~g~~~~a~~~~~~ 374 (385)
.+.++++..-.. + .++..|..|...++..|+++.|....++
T Consensus 1183 ~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1183 TELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 998877532110 0 2344455566666666666666554444
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.52 E-value=0.00014 Score=67.84 Aligned_cols=236 Identities=12% Similarity=0.023 Sum_probs=153.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC-------------------C
Q 040338 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS-------------------L 208 (385)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------------~ 208 (385)
--|+..++.+.|.+..++..+.+-.-+...+..+.-.+...+++.+|+.+.+.....-.. .
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 345667889999999999888765667778888888888888999999888876653111 1
Q ss_pred chHHHHHHHHHHHh---------cC------------CCCCCchhhHHHHHHHHHH---cCCChhHHHHHHHhcccCCh-
Q 040338 209 DVFVGSGLIDMYLK---------CG------------CNGIESSIQIGKALVTMYA---EGGSTQKADLAFELMSRRNM- 263 (385)
Q Consensus 209 ~~~~~~~li~~~~~---------~g------------~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~- 263 (385)
...|...++..+-. .| ..+..-...++..+..-.. +.-..+..+..+.-...|+.
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence 12222233332220 00 0001111222222222111 11111222111111112221
Q ss_pred -----hhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHH
Q 040338 264 -----ISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMV 324 (385)
Q Consensus 264 -----~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li 324 (385)
..|......+.+.++.++|...+ .|......+...|.+++|.+.|......++ +....++.
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 23444556677778888776444 455555566678899999999999888888 88999999
Q ss_pred HHHHccCCHHHHHH--HHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 325 DLLGLSGLLGEAKK--LIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 325 ~~~~~~g~~~~A~~--~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
.++.+.|+..-|.+ ++.++.+- .+...|-.+...+.+.|+.+.|-+.|+...++....|
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999998888888 99988773 4678899999999999999999999999988766544
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.52 E-value=1.6e-05 Score=73.57 Aligned_cols=183 Identities=11% Similarity=0.007 Sum_probs=106.3
Q ss_pred HHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCC----CchhhHHHHHHHHHHcCCChhHHHHHHHh
Q 040338 182 FSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGI----ESSIQIGKALVTMYAEGGSTQKADLAFEL 257 (385)
Q Consensus 182 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 257 (385)
+.+....++|.+|+.+++.+.+.... ..-|..+.+.|...|++++ -.....++--|.+|.+.|+|+.|.++-++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHH
Confidence 34444455555555555555443221 1223333444444444431 11122356678899999999999999988
Q ss_pred cccC--ChhhHHHHHHHHHhcCCCCchHHHH----HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccC
Q 040338 258 MSRR--NMISWMVLISAFSQAGVLEKPRFFF----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSG 331 (385)
Q Consensus 258 m~~~--~~~~~~~li~~~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g 331 (385)
...| .+..|-+-..-+-.+|++.+|.+++ -=...|..|-+.|..+..+++.++-.-.....+...+..-|-..|
T Consensus 817 ~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g 896 (1636)
T KOG3616|consen 817 CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEG 896 (1636)
T ss_pred hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhcc
Confidence 8776 3456666667788899999998876 112233344444444444444333222222555566677777788
Q ss_pred CHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 040338 332 LLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372 (385)
Q Consensus 332 ~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 372 (385)
++.+|..-|-+..+ |.+.++.|..++.|++|.++.
T Consensus 897 ~lkaae~~flea~d------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 897 DLKAAEEHFLEAGD------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ChhHHHHHHHhhhh------HHHHHHHhhhhhhHHHHHHHH
Confidence 88888877765543 455666666666666665554
No 88
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.49 E-value=2.4e-07 Score=51.93 Aligned_cols=35 Identities=31% Similarity=0.379 Sum_probs=31.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 175 (385)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00021 Score=68.76 Aligned_cols=229 Identities=10% Similarity=0.027 Sum_probs=166.0
Q ss_pred HHHhcCChhHHHHHHHhccCCCcc----ccc-cchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 040338 96 MHVKCGAVDYAESAFLRMLNPSLF----CWK-FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170 (385)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~~~~----~~~-~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 170 (385)
.....+-.++|..+|+...-.... ..+ +.+++|.++-+++.+|. +|..+..+-.+.|...+|++-|-+.
T Consensus 1057 iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 344455566777777654322211 111 67777777777766654 6999999999999999998877443
Q ss_pred CCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC------CCchhhHHHHHHHHHHc
Q 040338 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------IESSIQIGKALVTMYAE 244 (385)
Q Consensus 171 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------~~~~~~~~~~li~~~~~ 244 (385)
-|...|..+++.+.+.|.+++-.+.+....+..-+|... +.||-+|++.++.. ..|+..-...+.+-|..
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhh
Confidence 367789999999999999999999998888877666554 57888999988776 67888888888888888
Q ss_pred CCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH-------HHHHHHHHhcccCChhhHHHHHHHHHhccc-
Q 040338 245 GGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY- 316 (385)
Q Consensus 245 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 316 (385)
.|.++.|.-+|... .-|..|...+...|++..|.+.- +|-.+--+|...+.+..|. |.-.+.
T Consensus 1207 ~~~y~aAkl~y~~v-----SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~ii 1276 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNV-----SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ-----ICGLNII 1276 (1666)
T ss_pred hhhhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH-----hcCceEE
Confidence 89998888888544 56778888888888888777666 7777777777766544332 222222
Q ss_pred --hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 317 --TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 317 --~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
..-..-++..|-..|-+++.+.+++.-.
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 4555667777777777777777776554
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.46 E-value=0.00062 Score=63.78 Aligned_cols=302 Identities=15% Similarity=0.034 Sum_probs=181.2
Q ss_pred ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc---cccc---------cchHHHHHHhcCCCCC-----CcchHH
Q 040338 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---FCWK---------FGIIRLLIMFQKMPER-----DLVSWN 144 (385)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~---------~~~~~a~~~~~~~~~~-----~~~~~~ 144 (385)
.+.-+..+|..|--++.++|+++.+.+.|++...--. ..|. |.-..|..++++..++ |+..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4556788888888888888888888888887643211 1111 5555566665554322 222222
Q ss_pred HHHHHHH-hCCCchHHHHHHHHHHHC--CC--CCCHhhHHHHHHHhcCc----c-------CccchhhHHHHHHHhCC-C
Q 040338 145 TMISILT-RHGFGFETLCTFIELWNH--GF--GLSSMLYATAFSARASV----Y-------DLEWGPHLHSRVVHMEP-S 207 (385)
Q Consensus 145 ~li~~~~-~~~~~~~a~~~~~~m~~~--g~--~p~~~t~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~~~-~ 207 (385)
..-..|. +.+..++++++-.+.... |. ......|..+--+|... . ...++.+.+++.++.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2222332 335666666666665541 11 11223333333333322 1 13455666666666544 3
Q ss_pred CchHHHHHHHHHHHhcC-----------CCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CC------------
Q 040338 208 LDVFVGSGLIDMYLKCG-----------CNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RN------------ 262 (385)
Q Consensus 208 ~~~~~~~~li~~~~~~g-----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~------------ 262 (385)
|+...|-++=.+..+.= ......+...|..+...+...+++.+|+.+.+.... ++
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 44444433322221110 111456677888888888888888888888775543 11
Q ss_pred ---------hhhHHHHHHHHH------hcC-----------------CCCchHHHH------------------------
Q 040338 263 ---------MISWMVLISAFS------QAG-----------------VLEKPRFFF------------------------ 286 (385)
Q Consensus 263 ---------~~~~~~li~~~~------~~g-----------------~~~~a~~~~------------------------ 286 (385)
..|...++...- ..+ +..++....
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 112222211111 000 111111111
Q ss_pred --------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CCC-
Q 040338 287 --------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KPT- 348 (385)
Q Consensus 287 --------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~- 348 (385)
.|......+.+.+..+++...+.+..+..+ ...|......+...|...+|.+.|..... .|+
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 566777778888888999888888888777 77777788888999999999999988766 354
Q ss_pred cchHHHHHHHHHhcCChHHHHH--HHHHHHhccccCC
Q 040338 349 CVIWGALLGACCSHYNTKLAEL--VMRNLLQLDVKVF 383 (385)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~ 383 (385)
+.+-+++...+.+.|+...|.. ++.++.+.+|.+.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 5578889999999999888888 9999999998765
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=5e-05 Score=71.35 Aligned_cols=303 Identities=13% Similarity=-0.004 Sum_probs=174.9
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh-cc--------CCCchHHHhHHHHHHhcCCh
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF-YF--------VSDESIAKSSIDMHVKCGAV 103 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~-g~--------~~~~~~~~~li~~~~~~g~~ 103 (385)
+.+.|.+-.+.+. +-..|..|.+.+.+ .++++.|.-.+..|... |. .|+ ++=..+.-.-.+.|.+
T Consensus 743 ~MD~AfksI~~Ik--S~~vW~nmA~McVk---T~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMl 816 (1416)
T KOG3617|consen 743 SMDAAFKSIQFIK--SDSVWDNMASMCVK---TRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGML 816 (1416)
T ss_pred cHHHHHHHHHHHh--hhHHHHHHHHHhhh---hccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhH
Confidence 8888888777655 45578888888444 78888888777777642 21 222 2222333344567899
Q ss_pred hHHHHHHHhccCCCccccc----cchHHHHHHhcCCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHH----------
Q 040338 104 DYAESAFLRMLNPSLFCWK----FGIIRLLIMFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWN---------- 168 (385)
Q Consensus 104 ~~a~~~~~~m~~~~~~~~~----~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------- 168 (385)
++|+.+|.+-+..+....- |.+++|.++-+.-..- =..||......+-..++.+.|++.|++-..
T Consensus 817 EeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 817 EEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999999887766543222 6666666665443211 123555555555556667777666655211
Q ss_pred CC---------CCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHH
Q 040338 169 HG---------FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239 (385)
Q Consensus 169 ~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li 239 (385)
.. -..|...|...-..+-..|+.+.|+.+|+...+ |-+++
T Consensus 897 e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------------------------------~fs~V 945 (1416)
T KOG3617|consen 897 EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------------------------------YFSMV 945 (1416)
T ss_pred hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------------------------------hhhhe
Confidence 00 011223333333333444555555555444432 34555
Q ss_pred HHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH----HHHHHHHHhcccCChhhHHHHHHHHHhcc
Q 040338 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----FFVSLLSGCSHSGPVTKGKHYFTAMAKFT 315 (385)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (385)
+..+-.|+.++|-.+-++- .|......|...|-..|+..+|+.+| +|.+.|..|..++.-++...+--......
T Consensus 946 rI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSD 1023 (1416)
T ss_pred eeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchh
Confidence 5666667777776665543 35667777888899999999999988 78888888777665544332221111111
Q ss_pred c----------hhhHHHHHHHHHccCCHHHHHHHHHhCCC-------------CCCcchHHHHHHHHHhcCChHHHHHHH
Q 040338 316 Y----------TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-------------KPTCVIWGALLGACCSHYNTKLAELVM 372 (385)
Q Consensus 316 ~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------~p~~~~~~~li~~~~~~g~~~~a~~~~ 372 (385)
. ......-+..|-++|.+..|+++-=+-.+ ..|+...+.-...++...++++|..++
T Consensus 1024 ~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1024 LVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred HHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 22233445677888888888776432222 134445555555566666666666655
Q ss_pred HH
Q 040338 373 RN 374 (385)
Q Consensus 373 ~~ 374 (385)
-.
T Consensus 1104 ~~ 1105 (1416)
T KOG3617|consen 1104 CL 1105 (1416)
T ss_pred HH
Confidence 43
No 92
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.44 E-value=3.8e-07 Score=50.75 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=30.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGL 173 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 173 (385)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.43 E-value=1e-06 Score=75.75 Aligned_cols=208 Identities=10% Similarity=-0.033 Sum_probs=130.4
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC
Q 040338 148 SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227 (385)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 227 (385)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+ +.++.... .|.....
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av-------------- 69 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAV-------------- 69 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHH--------------
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHH--------------
Confidence 44555788888886555 22221122344556678888888876533 33433332 3444333
Q ss_pred CCchhhHHHHHHHHHHcCCChhHHHHHHHhcc-cC---ChhhHHH-HHHHHHhcCCCCchHHHH-------HHHHHHHHh
Q 040338 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMS-RR---NMISWMV-LISAFSQAGVLEKPRFFF-------FFVSLLSGC 295 (385)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~---~~~~~~~-li~~~~~~g~~~~a~~~~-------~~~~l~~~~ 295 (385)
..+...+...++-+.+..-+++.. ++ +..++.. ....+...|++++|++++ .....+..+
T Consensus 70 --------~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~ 141 (290)
T PF04733_consen 70 --------RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSLELLALAVQIL 141 (290)
T ss_dssp --------HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHH
T ss_pred --------HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHH
Confidence 222222222234455555554433 22 1122222 234456678888888777 667788899
Q ss_pred cccCChhhHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHH
Q 040338 296 SHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAE 369 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~ 369 (385)
.+.++++.|.+.++.|.+.+. .....+.+....-.+++.+|..+|+++.++ ++..+.+.+..++...|++++|.
T Consensus 142 L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 142 LKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp HHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999998777 333344444444456799999999999886 67788899999999999999999
Q ss_pred HHHHHHHhccccC
Q 040338 370 LVMRNLLQLDVKV 382 (385)
Q Consensus 370 ~~~~~~~~~~~~~ 382 (385)
+++++..+.++.+
T Consensus 222 ~~L~~al~~~~~~ 234 (290)
T PF04733_consen 222 ELLEEALEKDPND 234 (290)
T ss_dssp HHHHHHCCC-CCH
T ss_pred HHHHHHHHhccCC
Confidence 9999998877764
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.42 E-value=0.00012 Score=58.72 Aligned_cols=164 Identities=14% Similarity=0.040 Sum_probs=127.1
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHH
Q 040338 52 YNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIM 131 (385)
Q Consensus 52 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~ 131 (385)
.-.+--+|.. .|+...|.+-+++.++.. +.+..+|..+...|-+.|..+.|.+-|++..+..
T Consensus 38 rlqLal~YL~---~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------------- 99 (250)
T COG3063 38 RLQLALGYLQ---QGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------------- 99 (250)
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--------------
Confidence 3444455555 899999999999999874 3356788888899999999999999998887665
Q ss_pred hcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCch
Q 040338 132 FQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210 (385)
Q Consensus 132 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 210 (385)
+.+-.+.|..-..+|..|++++|...|++....-.-| -..||..+.-+..+.|+.+.|...+++.++....-+
T Consensus 100 -----p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~- 173 (250)
T COG3063 100 -----PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP- 173 (250)
T ss_pred -----CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC-
Confidence 4667788888888899999999999999988753222 356788888888899999999999999888754322
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC
Q 040338 211 FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261 (385)
Q Consensus 211 ~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 261 (385)
.+.-.+.+...+.|++..|...++.....
T Consensus 174 ----------------------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 174 ----------------------PALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred ----------------------hHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 22355666777788888888888777653
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.42 E-value=0.00026 Score=60.11 Aligned_cols=309 Identities=11% Similarity=0.009 Sum_probs=204.3
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHH-hHHHHHHhcCChhHHHHHHH
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAK-SSIDMHVKCGAVDYAESAFL 111 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~~~~ 111 (385)
.+.+|+.-|+.....|+..|-++.+-...+...|+-.-|+.=+....+. +||-..-. .-...+.+.|.++.|..=|+
T Consensus 53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~ 130 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFD 130 (504)
T ss_pred hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHH
Confidence 6777888888777778888888777655555578888888888888774 56643322 12356778899999999998
Q ss_pred hccCCCccccccchHHHHHHhcCCCCCCcchHH--HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcc
Q 040338 112 RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN--TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY 189 (385)
Q Consensus 112 ~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 189 (385)
.+.+.+.- +|...++.+-+ .+....|+ ..+..+.-.|+...|+.....+.+. .+-|...|..-..+|...|
T Consensus 131 ~vl~~~~s--~~~~~eaqskl----~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 131 QVLQHEPS--NGLVLEAQSKL----ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHhcCCC--cchhHHHHHHH----HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcC
Confidence 88766530 01111111110 01111222 2334556678888888888888874 2337777777788888888
Q ss_pred CccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHH
Q 040338 190 DLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWM 267 (385)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~ 267 (385)
++..|+.=+....+.. ..++.+.--+-..+...|+.+.++....+..+ ||-..+-
T Consensus 204 e~k~AI~Dlk~askLs-----------------------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLS-----------------------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred cHHHHHHHHHHHHhcc-----------------------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 8888876666554432 12445556777788888998888888887765 4432211
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc------hhhHHHHHHHHHccCCHHHHHHHHH
Q 040338 268 VLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY------TCYFVCMVDLLGLSGLLGEAKKLID 341 (385)
Q Consensus 268 ~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~ 341 (385)
..-.-+ .+..+. . .-+....+.++|.++..-.+...+..+ ...+..+-.++...|++.+|++...
T Consensus 261 ~~YKkl---kKv~K~-----l-es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 261 PFYKKL---KKVVKS-----L-ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHH---HHHHHH-----H-HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 111100 000000 0 012233566778888888888777666 4455667778888999999999998
Q ss_pred hCCCC-CC-cchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 342 EMPSK-PT-CVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 342 ~m~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+..+- |+ +.++.-=..+|.-..+++.|+.-|+...+.++.+
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 88774 44 7788888889999999999999999998887765
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.38 E-value=0.00019 Score=64.58 Aligned_cols=150 Identities=12% Similarity=-0.099 Sum_probs=86.6
Q ss_pred hhhhHHHHHhhhC--CC-ChhhHHHHHHHHHh-hhccCChHHHHHHHHHHHHhccCCC-chHHHhHHHHHHhcCChhHHH
Q 040338 33 LIDDDYRVFCDIG--PR-YLFTYNTMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSD-ESIAKSSIDMHVKCGAVDYAE 107 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~-~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~ 107 (385)
++++|..++++.. .| |...+.. ...+.. ....+....+.+.+.. ..+..|+ ......+...+...|++++|.
T Consensus 58 ~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 58 DLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777654 23 2323331 111111 1113555555555544 1112222 233344556777788888888
Q ss_pred HHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCH--hhHHHHHHH
Q 040338 108 SAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF-GLSS--MLYATAFSA 184 (385)
Q Consensus 108 ~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~t~~~ll~~ 184 (385)
+.+++..+.+ +.+...+..+...+...|++++|...+++..+... .|+. ..|..+...
T Consensus 135 ~~~~~al~~~-------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 135 EAARRALELN-------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHhhC-------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 8887776655 34556677777777778888888888777765421 1222 234456667
Q ss_pred hcCccCccchhhHHHHHHHh
Q 040338 185 RASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 185 ~~~~~~~~~a~~~~~~~~~~ 204 (385)
+...|++++|..+++.....
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHCCCHHHHHHHHHHHhcc
Confidence 77778888888888776543
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=1.3e-05 Score=67.50 Aligned_cols=150 Identities=11% Similarity=-0.059 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHHcCCChhHHHHHHHhccc--CCh----hhHHHHHHHHHhcCCCCchHHHH---------------HHH
Q 040338 231 SIQIGKALVTMYAEGGSTQKADLAFELMSR--RNM----ISWMVLISAFSQAGVLEKPRFFF---------------FFV 289 (385)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~a~~~~---------------~~~ 289 (385)
....+-.+...+.+.|++++|...|+++.+ |+. ..+..+..++...|++++|+..+ ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344455666677777788888888877764 321 35566677777788888887777 233
Q ss_pred HHHHHhcc--------cCChhhHHHHHHHHHhccc--hhhH-----------------HHHHHHHHccCCHHHHHHHHHh
Q 040338 290 SLLSGCSH--------SGPVTKGKHYFTAMAKFTY--TCYF-----------------VCMVDLLGLSGLLGEAKKLIDE 342 (385)
Q Consensus 290 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~--~~~~-----------------~~li~~~~~~g~~~~A~~~~~~ 342 (385)
.+..++.. .|+.+.|.+.++.+.+..+ .... ..+...|.+.|++++|...+++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33333333 2778889999998887666 1111 1345678889999999999999
Q ss_pred CCCC-CC----cchHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 040338 343 MPSK-PT----CVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 343 m~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
..+. |+ ...+..+..++.+.|++++|...++.+....+
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8764 43 35788999999999999999999999887654
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=2.1e-05 Score=72.86 Aligned_cols=203 Identities=13% Similarity=0.018 Sum_probs=154.4
Q ss_pred CCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHH
Q 040338 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFI 164 (385)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 164 (385)
|--..-..+...+.+.|-...|..+|++. ..|.-+|.+|+..|+..+|..+..
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------------------------emw~~vi~CY~~lg~~~kaeei~~ 448 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------------------------EMWDPVILCYLLLGQHGKAEEINR 448 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------------------------HHHHHHHHHHHHhcccchHHHHHH
Confidence 33344456778888899999999999764 468888999999999999999998
Q ss_pred HHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHc
Q 040338 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244 (385)
Q Consensus 165 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~ 244 (385)
.-.+ -+||...|..+.+......-+++|.++.+.....- -..+.....+
T Consensus 449 q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA-----------------------------~r~~~~~~~~ 497 (777)
T KOG1128|consen 449 QELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARA-----------------------------QRSLALLILS 497 (777)
T ss_pred HHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHH-----------------------------HHhhcccccc
Confidence 8877 47899999888888777777788887777654320 0111112233
Q ss_pred CCChhHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHH
Q 040338 245 GGSTQKADLAFELMSRR---NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFT 309 (385)
Q Consensus 245 ~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~ 309 (385)
.++++++.+.|+.-.+- -..+|-....+..+.++...|.+.| .||++-.+|.+.++-.+|...++
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 56888888888755442 3467777777777888888888877 88999999999999999999999
Q ss_pred HHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 310 AMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 310 ~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
+..+.+. ..++...+-.....|.+++|.+.+.++..
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9888776 66677777778889999999998887765
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.00014 Score=68.41 Aligned_cols=306 Identities=11% Similarity=0.002 Sum_probs=146.6
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHh
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (385)
=+++|..++.+-.+-|. .|.+..+ .|++++|.++-+.=.+-.+ ..||..-...+-..++.+.|++.|++
T Consensus 815 MlEeA~~lYr~ckR~DL--lNKlyQs------~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYDL--LNKLYQS------QGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHHh------cccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 55666666665544332 2333333 6777777666544333222 23455555555556777777777765
Q ss_pred ccCCCccccc---cchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC----------C---------
Q 040338 113 MLNPSLFCWK---FGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH----------G--------- 170 (385)
Q Consensus 113 m~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------g--------- 170 (385)
-..+-..... .++.....+..++.. ...|.-....+-..|+.+.|+.+|...++. |
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH
Confidence 4322110000 222222223333322 333444444455567777777777765432 0
Q ss_pred -CCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC---------CCch---------
Q 040338 171 -FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG---------IESS--------- 231 (385)
Q Consensus 171 -~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---------~~~~--------- 231 (385)
-.-|......+.+-|-..|++.+|..+|-+.. +++..|+.+-..+-.+ -..|
T Consensus 962 ~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen 962 EESGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE 1032 (1416)
T ss_pred HhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH
Confidence 01233333445555666666666665555432 2222232222222111 0000
Q ss_pred --hhHHHHHHHHHHcCCChhHHHHHHHhccc--------------CChhhHHHHHHHHHhcCCCCchHHHH----HHHHH
Q 040338 232 --IQIGKALVTMYAEGGSTQKADLAFELMSR--------------RNMISWMVLISAFSQAGVLEKPRFFF----FFVSL 291 (385)
Q Consensus 232 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~l 291 (385)
..-...-+..|.+.|.+.+|+++-=.-.+ .|....+.-.+-++...++++|..++ -|.-.
T Consensus 1033 e~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~A 1112 (1416)
T KOG3617|consen 1033 ELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGA 1112 (1416)
T ss_pred HcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 00112233445555655555554322221 14444555555566666777777666 44455
Q ss_pred HHHhcccCChhhHHHHHHHHHhcc---c-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFT---Y-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHY 363 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~---~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 363 (385)
+..|...+ +.-..++-+.|.-.. + ......+.+.|.++|.+..|-+-|.+.-++ -..++++.+.|
T Consensus 1113 lqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSG 1185 (1416)
T KOG3617|consen 1113 LQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSG 1185 (1416)
T ss_pred HHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcC
Confidence 55444333 222333333332211 1 556667788888888888888887766543 12344455555
Q ss_pred ChHH
Q 040338 364 NTKL 367 (385)
Q Consensus 364 ~~~~ 367 (385)
+.++
T Consensus 1186 dt~K 1189 (1416)
T KOG3617|consen 1186 DTQK 1189 (1416)
T ss_pred Ccce
Confidence 5443
No 100
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.29 E-value=1.5e-06 Score=48.57 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCc
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDE 87 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 87 (385)
.+||++|.+|++ .|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~---~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCK---AGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHH---CCCHHHHHHHHHHHHHcCCCCCC
Confidence 479999999888 89999999999999999999874
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.27 E-value=5.3e-05 Score=63.74 Aligned_cols=188 Identities=10% Similarity=-0.137 Sum_probs=126.5
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC----HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchH--
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS----SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF-- 211 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 211 (385)
.....+-.+...+.+.|++++|...|++.... .|+ ..++..+..++...|++++|...++.+.+..+.....
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 45667778888999999999999999999775 333 2456777888999999999999999999876532221
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CCh-hhHHHHHHHHHhcCCCCchHHHHHH
Q 040338 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNM-ISWMVLISAFSQAGVLEKPRFFFFF 288 (385)
Q Consensus 212 ~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~ 288 (385)
++..+-.++.+. +...+...|+.++|.+.|+.+.+ |+. ..+..+.......+ ...- ..
T Consensus 109 a~~~~g~~~~~~--------------~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~~~-~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQ--------------IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----RLAG-KE 169 (235)
T ss_pred HHHHHHHHHHHh--------------cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----HHHH-HH
Confidence 221111111111 00111223678999999998876 332 22222211110000 0000 12
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC
Q 040338 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346 (385)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (385)
..+...+.+.|++++|...++...+..+ ...+..+..++.+.|++++|.+.++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678899999999999999988754 567888999999999999999999887654
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.27 E-value=0.00084 Score=68.40 Aligned_cols=282 Identities=10% Similarity=-0.001 Sum_probs=162.5
Q ss_pred cCChHHHHHHHHHHHHhcc------CCC--chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCC
Q 040338 65 VGNIKMALHLHGLVKKFYF------VSD--ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP 136 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~------~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~ 136 (385)
.|+++++..++....+.-- .+. ......+-..+...|++++|...+++..... +
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------~ 483 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL------------------P 483 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------------------C
Confidence 5777777777776654310 011 1111222234445677777777776543211 1
Q ss_pred CCC----cchHHHHHHHHHhCCCchHHHHHHHHHHHC----CC-CCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 137 ERD----LVSWNTMISILTRHGFGFETLCTFIELWNH----GF-GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 137 ~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
..+ ....+.+...+...|++++|...+++.... |- .+-..++..+...+...|+++.|...+++.....-.
T Consensus 484 ~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 484 LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 112 124455666778899999999999887643 11 111234455666788899999999998887653110
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc------C--ChhhHHHHHHHHHhcCCC
Q 040338 208 LDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR------R--NMISWMVLISAFSQAGVL 279 (385)
Q Consensus 208 ~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~--~~~~~~~li~~~~~~g~~ 279 (385)
. |..........+..+...+...|++++|...+.+... + ....+..+...+...|++
T Consensus 564 ~---------------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~ 628 (903)
T PRK04841 564 Q---------------HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDL 628 (903)
T ss_pred h---------------ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCH
Confidence 0 0000000112233444555666788888777766532 1 122333455566677777
Q ss_pred CchHHHH--H------------HH-----HHHHHhcccCChhhHHHHHHHHHhccc--h----hhHHHHHHHHHccCCHH
Q 040338 280 EKPRFFF--F------------FV-----SLLSGCSHSGPVTKGKHYFTAMAKFTY--T----CYFVCMVDLLGLSGLLG 334 (385)
Q Consensus 280 ~~a~~~~--~------------~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~li~~~~~~g~~~ 334 (385)
++|.+.+ . +. ..+..+...|+.+.|.+.+........ . .....+..++...|+.+
T Consensus 629 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 708 (903)
T PRK04841 629 DNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFD 708 (903)
T ss_pred HHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHH
Confidence 7777665 0 00 011233446777777777665443221 1 11345666778888888
Q ss_pred HHHHHHHhCCCC----C----CcchHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 040338 335 EAKKLIDEMPSK----P----TCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 335 ~A~~~~~~m~~~----p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 379 (385)
+|...+++.... . ...+...+..++.+.|+.++|...+.+..+..
T Consensus 709 ~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 709 EAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888888877541 1 12355666778888899999988888887654
No 103
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00013 Score=62.19 Aligned_cols=293 Identities=9% Similarity=-0.032 Sum_probs=142.4
Q ss_pred hhhhHHHHHhhhC--CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh--cCChhHHH-
Q 040338 33 LIDDDYRVFCDIG--PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK--CGAVDYAE- 107 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~a~- 107 (385)
.+++|..++.++. .|+....|..+..+ +.+..-++.+.+++.--.+. ++-++..-|....-.-+ .|+..+.+
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALC--yyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALC--YYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHH--HHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 8899999998877 45555555444322 12267777888888777664 33344444544433333 24332221
Q ss_pred -HHHH----------hccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh
Q 040338 108 -SAFL----------RMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSM 176 (385)
Q Consensus 108 -~~~~----------~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 176 (385)
++-+ .+.+++.+.+ .+-+.|++++-.+.+.-+..--.|+-.|.+.++..+|..+..++.- ..|-..
T Consensus 243 k~ladN~~~~~~f~~~l~rHNLVvF-rngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Ey 319 (557)
T KOG3785|consen 243 KELADNIDQEYPFIEYLCRHNLVVF-RNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEY 319 (557)
T ss_pred HHHHhcccccchhHHHHHHcCeEEE-eCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHH
Confidence 2221 1222333222 2234455555444332233334455567888999999887766521 222222
Q ss_pred hHHHHHHH-----hcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHH
Q 040338 177 LYATAFSA-----RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA 251 (385)
Q Consensus 177 t~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A 251 (385)
....+..+ ........-|.+.|+..-.++..-|... -..++...+.-..++++.
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp---------------------GRQsmAs~fFL~~qFddV 378 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP---------------------GRQSMASYFFLSFQFDDV 378 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc---------------------chHHHHHHHHHHHHHHHH
Confidence 22222221 1122234556666666555554433211 112222233333345555
Q ss_pred HHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH------------HHH-HHHHHhcccCChhhHHHHHHHHHhcc
Q 040338 252 DLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF------------FFV-SLLSGCSHSGPVTKGKHYFTAMAKFT 315 (385)
Q Consensus 252 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~------------~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (385)
+-.++.++. .|...--.+..+++..|.+.+|.++| +|. .+..+|.+.+.++.|+.++-++...+
T Consensus 379 l~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~ 458 (557)
T KOG3785|consen 379 LTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS 458 (557)
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch
Confidence 555544443 12222223455556666666666655 333 33344555666666655555444433
Q ss_pred c-hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchH
Q 040338 316 Y-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIW 352 (385)
Q Consensus 316 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~ 352 (385)
. ......+..-|-+++.+--|-+.|+++... |++.-|
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 3 222233344555667776666777666542 554444
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=0.00024 Score=70.60 Aligned_cols=225 Identities=10% Similarity=0.036 Sum_probs=149.5
Q ss_pred CCCchHHHhHHHHHHhcCChhHHHHHHHhccCC-CccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHH
Q 040338 84 VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP-SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162 (385)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 162 (385)
|.+...|-..|....+.+++++|.++.++.... +. .+- +--...|-++++.-...|.-+...++
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~--------------REe-eEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINF--------------REE-EEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc--------------chh-HHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 445677888888888899999999998876432 11 000 12234688888887778878888899
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHH
Q 040338 163 FIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242 (385)
Q Consensus 163 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~ 242 (385)
|++..+. .. ....|..|...|.+.+..++|.++++.|.+. +.-... .|...+..+
T Consensus 1520 FeRAcqy-cd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~----------------------vW~~y~~fL 1574 (1710)
T KOG1070|consen 1520 FERACQY-CD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRK----------------------VWIMYADFL 1574 (1710)
T ss_pred HHHHHHh-cc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhh----------------------HHHHHHHHH
Confidence 9998775 22 2456778888899999999999999999886 223333 345556666
Q ss_pred HcCCChhHHHHHHHhccc--C---ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc-
Q 040338 243 AEGGSTQKADLAFELMSR--R---NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY- 316 (385)
Q Consensus 243 ~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 316 (385)
.+..+-+.|..++.+..+ | .+....-. +..-.+.|+.++++.+|+......+
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf----------------------AqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKF----------------------AQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHH----------------------HHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 666677788888776554 2 12221112 2223455667777777777777776
Q ss_pred -hhhHHHHHHHHHccCCHHHHHHHHHhCCCC---C--CcchHHHHHHHHHhcCChHHHHH
Q 040338 317 -TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK---P--TCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 317 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p--~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
...|+.+|+.-.+.|+.+.+..+|++.... | -...|.-.+..--++|+-..+..
T Consensus 1633 RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1633 RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 777888888888888888888888877663 1 12356666666566666544333
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.00011 Score=66.39 Aligned_cols=231 Identities=13% Similarity=0.092 Sum_probs=155.3
Q ss_pred HHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CH
Q 040338 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SS 175 (385)
Q Consensus 97 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~ 175 (385)
+.+.|++.+|.-.|+...+.+ +.+...|-.|--....+++-..|+..+++..+ +.| |.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-------------------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~Nl 353 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-------------------PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNL 353 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-------------------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccH
Confidence 445677777777777766655 35778898888888899998899999998887 466 56
Q ss_pred hhHHHHHHHhcCccCccchhhHHHHHHHhCC-------------------CCchHHHHHHHHHHHhcCCCC-CCchhhHH
Q 040338 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEP-------------------SLDVFVGSGLIDMYLKCGCNG-IESSIQIG 235 (385)
Q Consensus 176 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~li~~~~~~g~~~-~~~~~~~~ 235 (385)
...-.|.-.|...|.-..|.+.++.-+...+ .++...+..+-..|...++.. ..+|..+.
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 6777777788888888888888888765432 134445555555555544333 23666677
Q ss_pred HHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHH
Q 040338 236 KALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMA 312 (385)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (385)
..|.-.|.-.|++++|.+.|+.... | |-..||.|...++...+.. +|+.-|.+..
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~----------------------EAIsAY~rAL 491 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSE----------------------EAISAYNRAL 491 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccH----------------------HHHHHHHHHH
Confidence 7788888888888888888887754 4 5567777777776665554 4555666666
Q ss_pred hccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC---C---------CCcchHHHHHHHHHhcCChHHHHH
Q 040338 313 KFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS---K---------PTCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 313 ~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~---------p~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
+..+ +.+..-|.-+|...|.+.+|.+.|-+... + ++...|.+|=.++.-.+..|.+.+
T Consensus 492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 6555 44444566677777777777776644322 1 223466666666666666654433
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.00026 Score=63.53 Aligned_cols=147 Identities=10% Similarity=-0.008 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHH-------------------HHHHHHH
Q 040338 235 GKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFF-------------------FFVSLLS 293 (385)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~-------------------~~~~l~~ 293 (385)
...+.++..+..+++.|++-++...+ .++.-++....+|...|.+.+..... .+..+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34566666666677777777766554 23333444555566655554443333 3444555
Q ss_pred HhcccCChhhHHHHHHHHHhccc-hhhHH---------------------------HHHHHHHccCCHHHHHHHHHhCCC
Q 040338 294 GCSHSGPVTKGKHYFTAMAKFTY-TCYFV---------------------------CMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~---------------------------~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
+|.+.++.+.++..|.+...... +...+ .=...+.+.|++..|++.|.++..
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 66666777777777776544322 11111 114456677888888888888766
Q ss_pred C-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 346 K-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 346 ~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
+ | |...|..-.-+|.+.|.+..|+.-.+...+++|+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 4 4 5667888888888888888888777777776654
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.21 E-value=5.4e-05 Score=58.12 Aligned_cols=84 Identities=8% Similarity=-0.185 Sum_probs=51.4
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|...|+...... +.+...|..+..++.+.|++++|...|++....+ +.+...+.
T Consensus 37 ~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-------------------p~~~~a~~ 96 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-------------------ASHPEPVY 96 (144)
T ss_pred cCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------------CCCcHHHH
Confidence 566666666666666543 2355566666666666666666666666655544 34555666
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHH
Q 040338 145 TMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
.+..++.+.|++++|...|+...+
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666655
No 108
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.18 E-value=2.6e-05 Score=62.09 Aligned_cols=120 Identities=10% Similarity=-0.014 Sum_probs=90.7
Q ss_pred hhHHHHHhhh--CCCChhhHHHHHHHHHhh--hccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHH
Q 040338 35 DDDYRVFCDI--GPRYLFTYNTMINGGVRC--LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAF 110 (385)
Q Consensus 35 ~~A~~~~~~~--~~~~~~~~~~li~~~~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 110 (385)
.--...|+.. ...|-.+|..+|..|... .++|+++-....+..|.+.|+.-|..+|+.||+.+=+ |.+- ...+|
T Consensus 31 ~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f 108 (228)
T PF06239_consen 31 APHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF 108 (228)
T ss_pred cchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence 3345566665 477889999999999864 4589999999999999999999999999999998864 3221 11122
Q ss_pred HhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccC
Q 040338 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190 (385)
Q Consensus 111 ~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 190 (385)
+. +..-| -.+-+-|++++++|...|+-||..|+..+++.+++.+.
T Consensus 109 Q~---------------------------------~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QA---------------------------------EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HH---------------------------------HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 11111 23456789999999999999999999999999988765
Q ss_pred c
Q 040338 191 L 191 (385)
Q Consensus 191 ~ 191 (385)
.
T Consensus 154 p 154 (228)
T PF06239_consen 154 P 154 (228)
T ss_pred H
Confidence 3
No 109
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.18 E-value=0.0038 Score=57.63 Aligned_cols=202 Identities=10% Similarity=-0.022 Sum_probs=116.4
Q ss_pred CCChHHHHHHHHHHHHcccchhhHHh----------hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHHHHH
Q 040338 7 LKSLPIARKIHAQLISTCLISSIFLQ----------LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKMALH 73 (385)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~a~~ 73 (385)
.+++..+....+++++.-......+. +-++|......-. ..+.+.|+.+--.+.. .+++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~---dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS---DKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh---hhhHHHHHH
Confidence 35666677777777765433333333 6666666655433 3345566655444333 678888888
Q ss_pred HHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc---cccc---------cchHHHHHHhcCCC-----
Q 040338 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---FCWK---------FGIIRLLIMFQKMP----- 136 (385)
Q Consensus 74 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~---------~~~~~a~~~~~~~~----- 136 (385)
.+....+.+ +-|...+.-+--.=++.|+++.......+..+..+ ..|- |+...|..++++..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 888887764 33666777666666666777666666555543322 2222 55555554444331
Q ss_pred CCCcchHHHHH------HHHHhCCCchHHHHHHHHHHHCCCCCCHhhH-HHHHHHhcCccCccchhhHHHHHHHhCCCCc
Q 040338 137 ERDLVSWNTMI------SILTRHGFGFETLCTFIELWNHGFGLSSMLY-ATAFSARASVYDLEWGPHLHSRVVHMEPSLD 209 (385)
Q Consensus 137 ~~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 209 (385)
.|+...|.-.. ......|.+++|++.+..-... ..|...| .+-...+.+.+++++|..++..++..+ ||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 24544443322 3445667777777776654332 2233333 234555677888888888888888764 55
Q ss_pred hHHHHHH
Q 040338 210 VFVGSGL 216 (385)
Q Consensus 210 ~~~~~~l 216 (385)
..-|...
T Consensus 252 n~~Yy~~ 258 (700)
T KOG1156|consen 252 NLDYYEG 258 (700)
T ss_pred hHHHHHH
Confidence 5555443
No 110
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.18 E-value=2.4e-06 Score=46.24 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=26.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGF 171 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 171 (385)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 111
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=4.6e-06 Score=46.23 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCC
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVS 85 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~ 85 (385)
.+||++|.++++ .|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~---~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAK---AGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCC
Confidence 588999999766 899999999999999888877
No 112
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00024 Score=61.83 Aligned_cols=148 Identities=9% Similarity=-0.101 Sum_probs=77.7
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHh
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (385)
+..+|...|++..--|+.+...|=.--.-.+..|+.+....+.+.+.... .-+...|-.-........+++.|+.+-++
T Consensus 247 dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred CchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 77777777776653333322221110001122677777777777766532 12333344444445556777777777777
Q ss_pred ccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCc
Q 040338 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDL 191 (385)
Q Consensus 113 m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~ 191 (385)
..+.+. .++..|-.--..+...+++++|.=.|+..+. +.| +...|.-|+.+|...|.+
T Consensus 326 ~I~~~~-------------------r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 326 CIDSEP-------------------RNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred HhccCc-------------------ccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 665542 3333333333445555666666666655544 233 455666666666666666
Q ss_pred cchhhHHHHHH
Q 040338 192 EWGPHLHSRVV 202 (385)
Q Consensus 192 ~~a~~~~~~~~ 202 (385)
.+|.-+-+...
T Consensus 385 kEA~~~An~~~ 395 (564)
T KOG1174|consen 385 KEANALANWTI 395 (564)
T ss_pred HHHHHHHHHHH
Confidence 55554444433
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.12 E-value=0.00016 Score=58.70 Aligned_cols=114 Identities=6% Similarity=-0.034 Sum_probs=62.5
Q ss_pred hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHH-HhcCC--hhHH
Q 040338 33 LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH-VKCGA--VDYA 106 (385)
Q Consensus 33 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~a 106 (385)
+.+++...++... +.|...|..+-..+.. .|+++.|...++...+.. +-+...+..+..++ ...|+ .++|
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~---~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLW---RNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4444444444332 3345555555555444 566666666666666543 22455555555543 44454 3666
Q ss_pred HHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 107 ~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
.+++++..+.+ +.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-------------------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-------------------ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-------------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666665554 245555666666666666666666666666554
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.11 E-value=0.0051 Score=62.74 Aligned_cols=214 Identities=10% Similarity=-0.012 Sum_probs=141.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCH----hhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 040338 148 SILTRHGFGFETLCTFIELWNHGFGLSS----MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223 (385)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 223 (385)
..+...|++++|...+++....--..+. ...+.+...+...|+++.|...+++.....-......
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~----------- 528 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH----------- 528 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH-----------
Confidence 4556789999999999988763111121 2344555667789999999999988876422111100
Q ss_pred CCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-------CC----hhhHHHHHHHHHhcCCCCchHHHH------
Q 040338 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-------RN----MISWMVLISAFSQAGVLEKPRFFF------ 286 (385)
Q Consensus 224 g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~----~~~~~~li~~~~~~g~~~~a~~~~------ 286 (385)
+...++..+...+...|+++.|...+++..+ ++ ...+..+...+...|++++|...+
T Consensus 529 ------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 529 ------YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred ------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 1112335566677889999999998877653 11 123444556677789999987776
Q ss_pred -----------HHHHHHHHhcccCChhhHHHHHHHHHhccc----hhhH-----HHHHHHHHccCCHHHHHHHHHhCCCC
Q 040338 287 -----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYF-----VCMVDLLGLSGLLGEAKKLIDEMPSK 346 (385)
Q Consensus 287 -----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (385)
.+..+.......|+.+.|...++....... ...+ ...+..+...|+.+.|.+++......
T Consensus 603 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 603 LSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred hhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 344456667788999999999888755322 1111 11234455689999999998876653
Q ss_pred --CCc----chHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 040338 347 --PTC----VIWGALLGACCSHYNTKLAELVMRNLLQL 378 (385)
Q Consensus 347 --p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 378 (385)
... ..+..+..++...|++++|...+++....
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111 11346777889999999999999988764
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.10 E-value=0.00049 Score=68.53 Aligned_cols=187 Identities=10% Similarity=0.152 Sum_probs=126.7
Q ss_pred hHHHHHHHhcCccCccchhhHHHHHHHh-CCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHH
Q 040338 177 LYATAFSARASVYDLEWGPHLHSRVVHM-EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255 (385)
Q Consensus 177 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 255 (385)
.|-.-+......++.++|.++.++.+.. ++.-...- ...|.++++.-..-|.-+...++|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEK-------------------LNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEK-------------------LNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHH-------------------HHHHHHHHhHHHhhCcHHHHHHHH
Confidence 3334444455666666666666666543 22111111 123344444444445555566666
Q ss_pred HhcccC-C-hhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc----h
Q 040338 256 ELMSRR-N-MISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----T 317 (385)
Q Consensus 256 ~~m~~~-~-~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~ 317 (385)
++..+- | -..|..|...|.+.+..++|-+++ .|...+....+..+-+.|..++.+..+.-+ .
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 665542 2 245555666666666666666666 677777777777777888888888776555 6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
......+..-.+.|+.+.+..+|+..... | -...|+..|..-.++|+.+.++.+|++.+.++..+
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66777788888999999999999998875 3 45689999999999999999999999999888764
No 116
>PLN02789 farnesyltranstransferase
Probab=98.09 E-value=0.0027 Score=55.60 Aligned_cols=221 Identities=8% Similarity=-0.083 Sum_probs=138.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcC-ChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG-AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (385)
.++.++|+.+.+++++... -+..+|+..-.++...| ++++++..++++.+.+ +.+..+|
T Consensus 50 ~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-------------------pknyqaW 109 (320)
T PLN02789 50 DERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-------------------PKNYQIW 109 (320)
T ss_pred CCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-------------------CcchHHh
Confidence 6789999999999998642 24456666666666666 5789999998887766 3566678
Q ss_pred HHHHHHHHhCCCc--hHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHH
Q 040338 144 NTMISILTRHGFG--FETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221 (385)
Q Consensus 144 ~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 221 (385)
+-.-..+.+.|+. ++++.+++++.+.. +-|.+.|+....++.+.|+++++++.++++++.++. +..+|+.....+.
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~ 187 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHH
Confidence 7665556666653 67888898888752 227788888888888889999999999999988653 3344433332222
Q ss_pred hcCCCCCCchhhHHHHHHHHHHcCCC----hhHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 040338 222 KCGCNGIESSIQIGKALVTMYAEGGS----TQKADLAFELMSR--R-NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSG 294 (385)
Q Consensus 222 ~~g~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~ 294 (385)
+.|. .|+ .+++++...+..+ | |..+|+-+...+...+..
T Consensus 188 ~~~~-------------------l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~--------------- 233 (320)
T PLN02789 188 RSPL-------------------LGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEA--------------- 233 (320)
T ss_pred hccc-------------------cccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcc---------------
Confidence 2210 112 2455666555543 3 667777777777653321
Q ss_pred hcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccC------------------CHHHHHHHHHhCC
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSG------------------LLGEAKKLIDEMP 344 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g------------------~~~~A~~~~~~m~ 344 (385)
.+...++.+++.+....++ ......|++.|+... ..++|.++++.+.
T Consensus 234 ---l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 234 ---LVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ---cccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 0122234444444444333 455555666665421 3466888877773
No 117
>PLN02789 farnesyltranstransferase
Probab=98.07 E-value=0.0028 Score=55.47 Aligned_cols=225 Identities=10% Similarity=-0.011 Sum_probs=143.7
Q ss_pred HHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCC-CchHHHHHHHHHHHCCCCCCH
Q 040338 97 HVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFIELWNHGFGLSS 175 (385)
Q Consensus 97 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~ 175 (385)
+...++.++|+.+.+++.+.+ +.+..+|+..-.++...| +++++++.++++.+...+ +.
T Consensus 47 l~~~e~serAL~lt~~aI~ln-------------------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-ny 106 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-------------------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NY 106 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------------------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-ch
Confidence 334567778888887776555 345557776666666667 579999999999876332 34
Q ss_pred hhHHHHHHHhcCccC--ccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHH
Q 040338 176 MLYATAFSARASVYD--LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADL 253 (385)
Q Consensus 176 ~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 253 (385)
.+|+.--..+.+.|+ .+++..+.+.+++... .+..+|+...-.+...|+++++++
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-----------------------kNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-----------------------KNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-----------------------ccHHHHHHHHHHHHHhhhHHHHHH
Confidence 445543333334444 2566777777776543 244556666667777789999999
Q ss_pred HHHhccc---CChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHH
Q 040338 254 AFELMSR---RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLG 328 (385)
Q Consensus 254 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~ 328 (385)
.++++.+ .|...|+.....+.+.|....- ....+.......++....+ ...|+-+...+.
T Consensus 164 ~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~---------------~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 164 YCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL---------------EAMRDSELKYTIDAILANPRNESPWRYLRGLFK 228 (320)
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHhccccccc---------------cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence 9999987 3556666655555443221110 0123456667766666666 777777777776
Q ss_pred cc----CCHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhcC------------------ChHHHHHHHHHHHhcc
Q 040338 329 LS----GLLGEAKKLIDEMPS-K-PTCVIWGALLGACCSHY------------------NTKLAELVMRNLLQLD 379 (385)
Q Consensus 329 ~~----g~~~~A~~~~~~m~~-~-p~~~~~~~li~~~~~~g------------------~~~~a~~~~~~~~~~~ 379 (385)
.. ++..+|.+.+.+... . .+......|+..|+... ..++|.++++.+.+.+
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d 303 (320)
T PLN02789 229 DDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVAD 303 (320)
T ss_pred cCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhC
Confidence 63 445678888887655 3 35567788888888642 2367888888885433
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.06 E-value=0.00053 Score=67.09 Aligned_cols=213 Identities=9% Similarity=-0.025 Sum_probs=149.4
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhh-HHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSML-YATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSG 215 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 215 (385)
+.+...+..|+..+...+++++|.++.+...+. .|+... |-.+...+...++...+..+ .+.+. .+...-|+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ 101 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAI 101 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhH
Confidence 456778999999999999999999999977664 665544 33344467777777777766 33332 222222233
Q ss_pred HHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040338 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFFFFVSLL 292 (385)
Q Consensus 216 li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~ 292 (385)
+-..|...|+. .-+..++-.+..+|-+.|+.++|..+|+++.+ .|....|.+...|... ++++|++++ ...+
T Consensus 102 ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~--~KAV 176 (906)
T PRK14720 102 VEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYL--KKAI 176 (906)
T ss_pred HHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHH--HHHH
Confidence 33333333332 23445788899999999999999999999987 3778889999999998 999999886 3333
Q ss_pred HHhcccCChhhHHHHHHHHHhccc----------------------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CC
Q 040338 293 SGCSHSGPVTKGKHYFTAMAKFTY----------------------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PT 348 (385)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~----------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~ 348 (385)
..+....++..+..+|.++....+ ..++..+-..|-..++++++..+|+.+.+- .|
T Consensus 177 ~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 177 YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN 256 (906)
T ss_pred HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc
Confidence 446666778888888888877655 223333446677778888888888888763 45
Q ss_pred cchHHHHHHHHH
Q 040338 349 CVIWGALLGACC 360 (385)
Q Consensus 349 ~~~~~~li~~~~ 360 (385)
.....-++.+|.
T Consensus 257 ~~a~~~l~~~y~ 268 (906)
T PRK14720 257 NKAREELIRFYK 268 (906)
T ss_pred hhhHHHHHHHHH
Confidence 556667777776
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.05 E-value=0.0025 Score=56.95 Aligned_cols=195 Identities=12% Similarity=-0.073 Sum_probs=130.6
Q ss_pred hhhhHHHHHhhhC------CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHH
Q 040338 33 LIDDDYRVFCDIG------PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYA 106 (385)
Q Consensus 33 ~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 106 (385)
++.+++..-+.++ .|+...+...+.+... .-.......+..+... ..-...-|..-+..| ..|+.++|
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~----~~~~~~~~~~~~~~~~-~~~~aa~YG~A~~~~-~~~~~d~A 325 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE----ALPNQQAADLLAKRSK-RGGLAAQYGRALQTY-LAGQYDEA 325 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc----cccccchHHHHHHHhC-ccchHHHHHHHHHHH-HhcccchH
Confidence 8888888888777 3445556666665433 2222222222223222 111233344444433 67888888
Q ss_pred HHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-hhHHHHHHHh
Q 040338 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS-MLYATAFSAR 185 (385)
Q Consensus 107 ~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~ 185 (385)
+..++.+...- +.|+.-+......+.+.++.++|.+.++++... .|+. ...-.+..++
T Consensus 326 ~~~l~~L~~~~-------------------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 326 LKLLQPLIAAQ-------------------PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 88888765433 345556666778899999999999999999874 6763 4445677788
Q ss_pred cCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc
Q 040338 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 186 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (385)
.+.|+..+|+.+++...... +-|+..|..|..+|...|+ ....-.+-..+|...|+++.|+..+....+
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~-----~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN-----RAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999887764 4677788888888887773 344555666777777888888877766654
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.00061 Score=66.68 Aligned_cols=234 Identities=8% Similarity=-0.071 Sum_probs=128.8
Q ss_pred CChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCC-chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccch
Q 040338 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD-ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125 (385)
Q Consensus 47 ~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 125 (385)
.+...|..|+..+.. .+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .
T Consensus 29 ~n~~a~~~Li~~~~~---~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~------------- 88 (906)
T PRK14720 29 SKFKELDDLIDAYKS---ENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N------------- 88 (906)
T ss_pred chHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h-------------
Confidence 345567788887655 78888888888866554 444 34444444566666766655444 2
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
++.......++.-+..+...|.+. .-+...+..+..+|-+.|+.+++..+++++++..
T Consensus 89 --------------------~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D 146 (906)
T PRK14720 89 --------------------LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD 146 (906)
T ss_pred --------------------hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 222222233332222333333321 1122344444445555555555555555555544
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChh---hHHHHHHHHHhcCCCCch
Q 040338 206 PSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMI---SWMVLISAFSQAGVLEKP 282 (385)
Q Consensus 206 ~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~a 282 (385)
+-+..+.|-+...|... +.......+...+..+....++.++.++|.++..-++. .+-.+.......-...++
T Consensus 147 -~~n~~aLNn~AY~~ae~---dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~ 222 (906)
T PRK14720 147 -RDNPEIVKKLATSYEEE---DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL 222 (906)
T ss_pred -cccHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh
Confidence 23344444444444443 22333333344444566667888999999988874333 333333333332223333
Q ss_pred HHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHH
Q 040338 283 RFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLG 328 (385)
Q Consensus 283 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~ 328 (385)
.. ++-.+-..|....+++++..+++.+.+... .....-++.+|.
T Consensus 223 ~~--~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VG--LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HH--HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 32 456666778889999999999999999888 444455565554
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.04 E-value=8.1e-05 Score=57.12 Aligned_cols=109 Identities=5% Similarity=-0.149 Sum_probs=90.0
Q ss_pred HHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHh
Q 040338 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR 152 (385)
Q Consensus 73 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 152 (385)
.+++...+. .|+ .+..+...+...|++++|...|++....+ +.+...|..+..++.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------P~~~~a~~~lg~~~~~ 70 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-------------------PWSWRAHIALAGTWMM 70 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------CCcHHHHHHHHHHHHH
Confidence 445555543 333 35567788889999999999999987766 4688899999999999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 153 HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 153 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
.|++++|...|+..... -+.+...+..+..++...|+.++|+..++..++..
T Consensus 71 ~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 71 LKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999975 23377888889999999999999999999998865
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00031 Score=54.09 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhcccCChhh-HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHH
Q 040338 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMIS-WMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMA 312 (385)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (385)
.|..++..+. .++...+...++.+.+.+..+ |..+. .-.+...+...|++++|...|+.+.
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A-----------------~l~lA~~~~~~g~~~~A~~~l~~~~ 75 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALA-----------------ALQLAKAAYEQGDYDEAKAALEKAL 75 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHH-----------------HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555553 677888888888777633222 33322 2234455667788888888898888
Q ss_pred hccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 313 KFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 313 ~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
.... ......+...+...|++++|+..++..... .....+......|.+.|++++|...|++.
T Consensus 76 ~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 76 ANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7664 334455788889999999999999886654 34456777888999999999999999874
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.01 E-value=0.00021 Score=54.24 Aligned_cols=92 Identities=13% Similarity=-0.041 Sum_probs=64.1
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|.+.++.+.+.+ +.+...+..+...+.+.|++++|...+++..+.+ +.+..++.
T Consensus 30 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------------p~~~~~~~ 89 (135)
T TIGR02552 30 QGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-------------------PDDPRPYF 89 (135)
T ss_pred cccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------CCChHHHH
Confidence 677888888887777654 3366777777777777788888887777765544 35566666
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhH
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 178 (385)
.+...+...|++++|...|+...+. .|+...+
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 6777777778888888877777664 4544443
No 124
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.00 E-value=8.5e-06 Score=44.00 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 040338 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 350 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
+||++++++|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.00 E-value=0.0002 Score=58.16 Aligned_cols=121 Identities=10% Similarity=-0.046 Sum_probs=100.8
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.++.+++...++...+.. +.+...|..+...|...|+.++|...|++..+.+ +.+...+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------------------P~~~~~~~ 111 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------------------GENAELYA 111 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------CCCHHHHH
Confidence 466677887888777765 5588999999999999999999999999887766 46777888
Q ss_pred HHHHHH-HhCCC--chHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 145 TMISIL-TRHGF--GFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 145 ~li~~~-~~~~~--~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
.+..++ ...|+ .++|.+++++..+. .| +...+..+...+.+.|++++|+..|+.+++...+
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888764 67777 59999999999986 44 6678888888999999999999999999988653
No 126
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.00 E-value=6.2e-05 Score=53.13 Aligned_cols=80 Identities=13% Similarity=-0.094 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHhhHHHHHHHhcCcc--------CccchhhHHHHHHHhCCCCchHHH
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNHGF-GLSSMLYATAFSARASVY--------DLEWGPHLHSRVVHMEPSLDVFVG 213 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 213 (385)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+...+.+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777778999999999999999999 999999999999877543 244667899999999999999999
Q ss_pred HHHHHHHHh
Q 040338 214 SGLIDMYLK 222 (385)
Q Consensus 214 ~~li~~~~~ 222 (385)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988887765
No 127
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.004 Score=56.19 Aligned_cols=352 Identities=9% Similarity=-0.100 Sum_probs=210.1
Q ss_pred ccCCChHHHHHHHHHHHHcccchhhHHh-----------hhhhHHHHHhhhC--CCC-hhhHHHHHHHHHhhhccCChHH
Q 040338 5 GSLKSLPIARKIHAQLISTCLISSIFLQ-----------LIDDDYRVFCDIG--PRY-LFTYNTMINGGVRCLCVGNIKM 70 (385)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~~~~ 70 (385)
-.+|+++.|...|...+.-... +..++ ++++|.+=-.+-. .|+ ...|+-.-.++.- .|++++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~---lg~~~e 88 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG---LGDYEE 88 (539)
T ss_pred cccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh---cccHHH
Confidence 3579999999999998876544 44444 5555544322222 444 3456666555444 899999
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcC---ChhHHHHHHHhc---------------------cCCCccccc----
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCG---AVDYAESAFLRM---------------------LNPSLFCWK---- 122 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m---------------------~~~~~~~~~---- 122 (385)
|+.-|.+-.+.. +.+...++-|.+++.... +.-.--.++... .+.++-..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999998888763 446677777777762110 000000000000 001110000
Q ss_pred -cchHHHHHHhcCC----------------CCC------------C----------cchHHHHHHHHHhCCCchHHHHHH
Q 040338 123 -FGIIRLLIMFQKM----------------PER------------D----------LVSWNTMISILTRHGFGFETLCTF 163 (385)
Q Consensus 123 -~~~~~a~~~~~~~----------------~~~------------~----------~~~~~~li~~~~~~~~~~~a~~~~ 163 (385)
..+..+...+... .+| | ..-...+.+...+..+++.+++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 1111111111111 011 0 012445667777778888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH
Q 040338 164 IELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243 (385)
Q Consensus 164 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~ 243 (385)
....+.. -+..-++..-.++...|........-+..++.|. -...-|+-+-.++.+.| .+|.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g---------------~a~~ 309 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLG---------------NAYT 309 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhh---------------hhhh
Confidence 8887753 3344445566677888877777666666665553 23344444555554433 5777
Q ss_pred cCCChhHHHHHHHhcccC--ChhhHHHH--H----HHHHhc--CCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHh
Q 040338 244 EGGSTQKADLAFELMSRR--NMISWMVL--I----SAFSQA--GVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK 313 (385)
Q Consensus 244 ~~g~~~~A~~~~~~m~~~--~~~~~~~l--i----~~~~~~--g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (385)
+.++.+.|+..|.+...+ +..+.+.+ . ....+. -+++.|.+. -.-...+.+.|++..|...+.++++
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~---r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEE---REKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHH---HHHHHHHHhccCHHHHHHHHHHHHh
Confidence 778999999999876542 21111111 0 000000 011111111 1225667789999999999999999
Q ss_pred ccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 314 FTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 314 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
..+ ...|.-..-+|.+.|.+..|++=.+...+. +....|..=..++....++++|++.|++.++.+|..
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 988 888999999999999999998877666653 345567777777778889999999999999888654
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00068 Score=55.66 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=80.9
Q ss_pred HHHHHhcCCCCchHHHH-------HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHH----HccCCHHHHHH
Q 040338 270 ISAFSQAGVLEKPRFFF-------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLL----GLSGLLGEAKK 338 (385)
Q Consensus 270 i~~~~~~g~~~~a~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~ 338 (385)
...|+..|++++|++.. +...=+....+..+.+.|.+.++.|.+.....+.+.|..++ .-.+++.+|.-
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfy 194 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFY 194 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 34577778888888777 33333344556677888888888888777744444444443 44567888888
Q ss_pred HHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 339 LIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 339 ~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
+|++|.++ |+..+.+....++...|++++|..++++.++..++.+
T Consensus 195 ifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 195 IFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred HHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 88888875 7788888888888888888888888888887766543
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.00085 Score=54.98 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=121.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|+-+....+....... .+.|....+..+....+.|++.+|...|.+..... ++|-.+|+
T Consensus 79 ~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------------------p~d~~~~~ 138 (257)
T COG5010 79 RGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------------------PTDWEAWN 138 (257)
T ss_pred cccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------------------CCChhhhh
Confidence 67777777776665443 23456677778899999999999999999987776 58999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 223 (385)
.+--+|.+.|++++|..-|.+..+. .| +...++.+...+.-.|+.+.|..++......+.
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~----------------- 199 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA----------------- 199 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-----------------
Confidence 9999999999999999999998874 55 456677888888888999999999998877653
Q ss_pred CCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC
Q 040338 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261 (385)
Q Consensus 224 g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 261 (385)
-|..+-+.+.......|+++.|..+-..-..+
T Consensus 200 ------ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 200 ------ADSRVRQNLALVVGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred ------CchHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence 24445578888889999999999887655443
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.98 E-value=0.001 Score=64.21 Aligned_cols=132 Identities=5% Similarity=-0.151 Sum_probs=107.8
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCC-CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchH
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVS-DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 126 (385)
++..+-.|-..... .|+.++|..+++...+. .| +......+...+.+.+++++|+..+++....+
T Consensus 85 ~~~~~~~La~i~~~---~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------- 150 (694)
T PRK15179 85 TELFQVLVARALEA---AHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--------- 150 (694)
T ss_pred cHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---------
Confidence 35555666666555 89999999999999986 44 45667778899999999999999999988776
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
+.+....+.+-.++.+.|++++|..+|++.... .+-+..++..+-.++...|+.++|...|+...+.
T Consensus 151 ----------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 151 ----------SSSAREILLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ----------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677788888999999999999999999873 2224778888888899999999999999998876
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.97 E-value=0.002 Score=57.49 Aligned_cols=149 Identities=13% Similarity=0.017 Sum_probs=102.2
Q ss_pred CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHH
Q 040338 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRR-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSG 294 (385)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~ 294 (385)
..|+...+...+.+......-..+-.++.+-.+| ...........+...|++++|+..+ .+....+.
T Consensus 270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i 349 (484)
T COG4783 270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDI 349 (484)
T ss_pred CCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4555556666666555544444444443333332 2223333344455677788777777 55667777
Q ss_pred hcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHH
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
+.+.++.++|.+.++++....+ ....-.+.++|.+.|++.+|++.+++.... .|...|..|.++|...|+..++..
T Consensus 350 ~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 350 LLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 8888888999999999888877 666667888899999999999998887664 467789999999988888877777
Q ss_pred HHHHHH
Q 040338 371 VMRNLL 376 (385)
Q Consensus 371 ~~~~~~ 376 (385)
...+..
T Consensus 430 A~AE~~ 435 (484)
T COG4783 430 ARAEGY 435 (484)
T ss_pred HHHHHH
Confidence 666553
No 132
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.96 E-value=0.0054 Score=52.41 Aligned_cols=259 Identities=10% Similarity=-0.018 Sum_probs=178.3
Q ss_pred HHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHH---HHHHhCCCchHHHHHHHHH
Q 040338 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI---SILTRHGFGFETLCTFIEL 166 (385)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m 166 (385)
.--+-..+.-.|++.+|+.-|....+ .|+..|.++. ..|...|+...|+.=+++.
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve----------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVE----------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHc----------------------CCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 33455566667777777777766543 4444455443 5678889988888888888
Q ss_pred HHCCCCCCHhhHH-HHHHHhcCccCccchhhHHHHHHHhCCCC--chHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH
Q 040338 167 WNHGFGLSSMLYA-TAFSARASVYDLEWGPHLHSRVVHMEPSL--DVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYA 243 (385)
Q Consensus 167 ~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~ 243 (385)
.+ ++||-..-. .--..+.+.|.++.|..=|+..++..... ....++.+...- ........+..+.
T Consensus 99 le--lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~----------e~~~l~~ql~s~~ 166 (504)
T KOG0624|consen 99 LE--LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ----------EHWVLVQQLKSAS 166 (504)
T ss_pred Hh--cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH----------HHHHHHHHHHHHh
Confidence 76 477743322 12334678999999999999999876532 233343333221 1122234566677
Q ss_pred cCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHH
Q 040338 244 EGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYF 308 (385)
Q Consensus 244 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~ 308 (385)
-.|+...|+.....+.+ .|...|..=..+|...|.+..|+.-+ ++--+-..+-..|+.+.+....
T Consensus 167 ~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred cCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 78999999999998876 37788888888999999999888766 5555666677788888888888
Q ss_pred HHHHhccc-----hhhHHHH---------HHHHHccCCHHHHHHHHHhCCCC-CCc-----chHHHHHHHHHhcCChHHH
Q 040338 309 TAMAKFTY-----TCYFVCM---------VDLLGLSGLLGEAKKLIDEMPSK-PTC-----VIWGALLGACCSHYNTKLA 368 (385)
Q Consensus 309 ~~~~~~~~-----~~~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~-p~~-----~~~~~li~~~~~~g~~~~a 368 (385)
.+..+.++ -+.|-.+ .....+.++|.++.+..+...+. |.. ..+..+-.++...|++.+|
T Consensus 247 RECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 247 RECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 88888777 2222221 22345678888888888776653 542 2345566778889999999
Q ss_pred HHHHHHHHhccccC
Q 040338 369 ELVMRNLLQLDVKV 382 (385)
Q Consensus 369 ~~~~~~~~~~~~~~ 382 (385)
++...+.++..+.+
T Consensus 327 iqqC~evL~~d~~d 340 (504)
T KOG0624|consen 327 IQQCKEVLDIDPDD 340 (504)
T ss_pred HHHHHHHHhcCchH
Confidence 99999999888764
No 133
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.00033 Score=65.16 Aligned_cols=151 Identities=12% Similarity=0.030 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHHHH------HHHHHHhcccCChhhH
Q 040338 233 QIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFFFF------VSLLSGCSHSGPVTKG 304 (385)
Q Consensus 233 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~------~~l~~~~~~~~~~~~a 304 (385)
..|..+|.+|...|+..+|..+...-.+ ||...|..+.+......-+++|.++.-+ ..+.......++++++
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~ 504 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEA 504 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHH
Confidence 3566777788888888888887765443 5777787777777776667777777611 1111112336788888
Q ss_pred HHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 040338 305 KHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KPT-CVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 305 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
.+.|+.-.+.++ ..+|-.+..+..+.++++.|.+.|..-.. .|+ ...||.+-.+|.+.|+..+|...+++..+.+.
T Consensus 505 ~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 505 DKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 888888777776 77777788888888888888888877665 354 45688888888888888888888888877765
Q ss_pred cCC
Q 040338 381 KVF 383 (385)
Q Consensus 381 ~~~ 383 (385)
.++
T Consensus 585 ~~w 587 (777)
T KOG1128|consen 585 QHW 587 (777)
T ss_pred CCC
Confidence 554
No 134
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.95 E-value=9.7e-05 Score=66.25 Aligned_cols=126 Identities=6% Similarity=-0.092 Sum_probs=99.2
Q ss_pred ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHH
Q 040338 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLC 161 (385)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 161 (385)
+.+.+......+++.+....+++++..++-+...... ....-..|..++++.|.+.|..++++.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~----------------~~~~~~~t~ha~vR~~l~~~~~~~~l~ 124 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPN----------------CSYLLPSTHHALVRQCLELGAEDELLE 124 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcc----------------cccccCccHHHHHHHHHhcCCHHHHHH
Confidence 4455677788888888888888888888877654321 002234466799999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 040338 162 TFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223 (385)
Q Consensus 162 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 223 (385)
++..=...|+-||.+||+.|+..+.+.|++..|.++..+|...+...+..++.--+.++.+.
T Consensus 125 ~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 125 LLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99998899999999999999999999999999999999998887777777776666665555
No 135
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.00076 Score=56.27 Aligned_cols=93 Identities=8% Similarity=-0.143 Sum_probs=46.8
Q ss_pred HHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
+++.+..+.+..++++|++++..-.+.+ +.+......|..+|....++..|-..|+.+..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-------------------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q- 72 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-------------------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ- 72 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 4455555555555666665554443333 23444455555555566666666666666544
Q ss_pred CCCCCHhhHHH-HHHHhcCccCccchhhHHHHHHH
Q 040338 170 GFGLSSMLYAT-AFSARASVYDLEWGPHLHSRVVH 203 (385)
Q Consensus 170 g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~ 203 (385)
..|...-|.. -...+.+.+.+.+|..+...|.+
T Consensus 73 -l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 73 -LHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred -hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 2444444432 22334444555555555555543
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.0007 Score=60.56 Aligned_cols=125 Identities=14% Similarity=0.052 Sum_probs=96.6
Q ss_pred HHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
...+|+..+...++++.|..+|+++.+.+ | ...-.++..+...++..+|.+++.+...
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--------------------p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~ 228 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--------------------P--EVAVLLARVYLLMNEEVEAIRLLNEALK 228 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--------------------C--cHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556666667788999999998887544 3 3455678888888888999999999886
Q ss_pred CCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCCh
Q 040338 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGST 248 (385)
Q Consensus 169 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~ 248 (385)
. .+-+......-...+.+.++.+.|.++.+++....+ .+-.+|..|..+|.+.|++
T Consensus 229 ~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP-----------------------~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 229 E-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSP-----------------------SEFETWYQLAECYIQLGDF 284 (395)
T ss_pred h-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-----------------------hhHHHHHHHHHHHHhcCCH
Confidence 4 233566666677778899999999999999988642 2335678888888899999
Q ss_pred hHHHHHHHhcc
Q 040338 249 QKADLAFELMS 259 (385)
Q Consensus 249 ~~A~~~~~~m~ 259 (385)
+.|+..++.++
T Consensus 285 e~ALlaLNs~P 295 (395)
T PF09295_consen 285 ENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCc
Confidence 99999999887
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=9.7e-05 Score=54.56 Aligned_cols=96 Identities=11% Similarity=-0.028 Sum_probs=79.2
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC----cchHHHHHH
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT----CVIWGALLG 357 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~----~~~~~~li~ 357 (385)
+......+...|++++|...++.+....+ ...+..+...+.+.|++++|.+.|+.+... |+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34556667788999999999999887655 345667899999999999999999988763 44 346778888
Q ss_pred HHHhcCChHHHHHHHHHHHhccccCC
Q 040338 358 ACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 358 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
++...|+.++|...++++.+..|.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 99999999999999999999988764
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.90 E-value=0.025 Score=54.41 Aligned_cols=112 Identities=12% Similarity=0.051 Sum_probs=78.8
Q ss_pred cCCChHHHHHHHHHHHHcccchhhHHh----------hhhhHHHHHhhhC---CCChhhHHHHHHHHHhhhccCChHHHH
Q 040338 6 SLKSLPIARKIHAQLISTCLISSIFLQ----------LIDDDYRVFCDIG---PRYLFTYNTMINGGVRCLCVGNIKMAL 72 (385)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~a~ 72 (385)
.++++..|.+-.+.+.+.......... +.++|..+++... ..|..|-..+-..|.. .++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d---~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD---LGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH---HhhhhHHH
Confidence 457788888888887776544333332 7888888888655 3356677777777666 88899999
Q ss_pred HHHHHHHHhccCCCchHHHhHHHHHHhcCChh----HHHHHHHhccCCCccccc
Q 040338 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD----YAESAFLRMLNPSLFCWK 122 (385)
Q Consensus 73 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~----~a~~~~~~m~~~~~~~~~ 122 (385)
.+|+...+. .|+......+..+|.|.+++. .|.++++...+.-..-|+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 999888865 566777777888888876554 467777777666555555
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.89 E-value=0.00011 Score=55.83 Aligned_cols=94 Identities=9% Similarity=-0.025 Sum_probs=77.8
Q ss_pred HHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCCh
Q 040338 290 SLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNT 365 (385)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~ 365 (385)
.+...+...|+.++|.+.++.+...++ ...+..+...+...|++++|...++..... .+...+..+...|...|++
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence 444556667788888888998888766 778888999999999999999999987653 4566788888899999999
Q ss_pred HHHHHHHHHHHhccccCC
Q 040338 366 KLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~ 383 (385)
++|...+++..+.+|.+.
T Consensus 102 ~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 102 ESALKALDLAIEICGENP 119 (135)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 999999999999887664
No 140
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.79 E-value=0.0023 Score=61.94 Aligned_cols=134 Identities=8% Similarity=-0.087 Sum_probs=105.4
Q ss_pred cCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHH
Q 040338 83 FVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCT 162 (385)
Q Consensus 83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 162 (385)
.+.++..+..|.....+.|..++|..+++...+.. +.+......+...+.+.+++++|+..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-------------------Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-------------------PDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-------------------CCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 45568889999999999999999999999887655 35667788899999999999999999
Q ss_pred HHHHHHCCCCCC-HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH
Q 040338 163 FIELWNHGFGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTM 241 (385)
Q Consensus 163 ~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~ 241 (385)
+++.... .|+ ......+..++.+.|++++|..+|+++...+. -+..++ ..+...
T Consensus 143 ~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~----------------------~~~a~~ 197 (694)
T PRK15179 143 IELYFSG--GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGY----------------------VGWAQS 197 (694)
T ss_pred HHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHH----------------------HHHHHH
Confidence 9999885 564 55667778889999999999999999998442 223444 444555
Q ss_pred HHcCCChhHHHHHHHhccc
Q 040338 242 YAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 242 ~~~~g~~~~A~~~~~~m~~ 260 (385)
+-+.|+.++|...|+...+
T Consensus 198 l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 198 LTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5566677777777776653
No 141
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0007 Score=61.43 Aligned_cols=196 Identities=14% Similarity=-0.013 Sum_probs=126.7
Q ss_pred hcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC------------CCchhhHHHHHHHHHHcCCChhHHH
Q 040338 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG------------IESSIQIGKALVTMYAEGGSTQKAD 252 (385)
Q Consensus 185 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------------~~~~~~~~~~li~~~~~~g~~~~A~ 252 (385)
+.+.|++.+|.-.|+..++..+ -+...|--|-......++-. .+.+..+..+|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 3466777788877877776643 22233322222222111111 3455677777888888888888888
Q ss_pred HHHHhccc--C---------------------ChhhHHHHHHHHHhcCCCCch-HHHHHHHHHHHHhcccCChhhHHHHH
Q 040338 253 LAFELMSR--R---------------------NMISWMVLISAFSQAGVLEKP-RFFFFFVSLLSGCSHSGPVTKGKHYF 308 (385)
Q Consensus 253 ~~~~~m~~--~---------------------~~~~~~~li~~~~~~g~~~~a-~~~~~~~~l~~~~~~~~~~~~a~~~~ 308 (385)
.++++-.. | +......+-..|....+-... ++-=....|.-.|--.|++++|...|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 88876642 0 111122222222211111000 00005566666777889999999999
Q ss_pred HHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 309 TAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KPT-CVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 309 ~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
+.+....+ ...||-|...++...+.++|+..|++..+ +|+ ++..-.|.-+|...|.+++|...|=+.+.+..+
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99988888 88999999999999999999999999887 476 456667788889999999999888877765544
No 142
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0025 Score=52.29 Aligned_cols=153 Identities=9% Similarity=-0.058 Sum_probs=118.0
Q ss_pred HhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 040338 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170 (385)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 170 (385)
..+-..+.-.|+-+....+........ +.|...-+.++....+.|++.+|+..+++....
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-------------------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l- 129 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-------------------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL- 129 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-------------------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-
Confidence 455566666777777777765543322 245556677889999999999999999999764
Q ss_pred CCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhH
Q 040338 171 FGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK 250 (385)
Q Consensus 171 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~ 250 (385)
-++|..+|+.+--+|-+.|+.+.|..-|.+..+.-+. +....++|.-.|.-.|+.+.
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-----------------------~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-----------------------EPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-----------------------CchhhhhHHHHHHHcCCHHH
Confidence 4568899999999999999999999999998886432 22334677777777899999
Q ss_pred HHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH
Q 040338 251 ADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF 286 (385)
Q Consensus 251 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 286 (385)
|..++..... .|...-..+..+....|++++|..+-
T Consensus 187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999987754 37777788888888899988887765
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.0002 Score=49.99 Aligned_cols=93 Identities=14% Similarity=0.036 Sum_probs=77.3
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcC
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHY 363 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g 363 (385)
+..+...+...|++++|...++.+.+..+ ...+..+...+...|++++|.+.++..... | +..++..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44566677778999999999999887766 566777888899999999999999987653 3 4457888899999999
Q ss_pred ChHHHHHHHHHHHhccc
Q 040338 364 NTKLAELVMRNLLQLDV 380 (385)
Q Consensus 364 ~~~~a~~~~~~~~~~~~ 380 (385)
++++|...+++..+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 99999999999887765
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.76 E-value=0.00037 Score=62.61 Aligned_cols=120 Identities=12% Similarity=-0.002 Sum_probs=99.4
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh--ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccch
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF--YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 125 (385)
+......++.. +....+++.+..++-..... ....-..|..++|+.|.+.|..+.++.+++.=..-|++
T Consensus 65 S~~dld~fvn~---~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF------ 135 (429)
T PF10037_consen 65 SSLDLDIFVNN---VESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIF------ 135 (429)
T ss_pred cHHHHHHHHhh---cCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccC------
Confidence 45556666776 44478889999999888876 33344566779999999999999999999888888884
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCc
Q 040338 126 IRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV 188 (385)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 188 (385)
||..++|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 136 ------------~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 136 ------------PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ------------CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999888888888888777777665
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.73 E-value=0.00061 Score=60.92 Aligned_cols=118 Identities=11% Similarity=0.017 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHh
Q 040338 234 IGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAK 313 (385)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (385)
.-.+|+..+...++++.|+.+|+++.+.+......++..+...++-.+|+++ +.+..+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~l----------------------l~~aL~ 228 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRL----------------------LNEALK 228 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHH----------------------HHHHHH
Confidence 3355677777788999999999999987766666677777666655455444 444333
Q ss_pred ccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC-cchHHHHHHHHHhcCChHHHHHHHH
Q 040338 314 FTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT-CVIWGALLGACCSHYNTKLAELVMR 373 (385)
Q Consensus 314 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~ 373 (385)
..+ ...+..-.+.|.+.++++.|.++.+++.+. |+ ..+|..|..+|...|+++.|+..++
T Consensus 229 ~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 229 ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 333 333333344445555555555555555442 32 2255555555555555555554444
No 146
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.00073 Score=58.42 Aligned_cols=205 Identities=15% Similarity=0.106 Sum_probs=101.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNH----GFGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
|.-....|-..+++++|.+.|.+..+. +-..+ ...|.....++.+ .++++|.+.+++...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~-------------- 102 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIE-------------- 102 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHH--------------
Confidence 444566777788888888888776432 11111 1223333333322 255555555544432
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcC-CChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEG-GSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCS 296 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~ 296 (385)
.|.+.|++. .-...+..+...|-+. |++++|++.|++.. ..|...|....+.+ ++..+...+.
T Consensus 103 -~y~~~G~~~--~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~-----------~~y~~e~~~~~a~~--~~~~~A~l~~ 166 (282)
T PF14938_consen 103 -IYREAGRFS--QAAKCLKELAEIYEEQLGDYEKAIEYYQKAA-----------ELYEQEGSPHSAAE--CLLKAADLYA 166 (282)
T ss_dssp -HHHHCT-HH--HHHHHHHHHHHHHCCTT--HHHHHHHHHHHH-----------HHHHHTT-HHHHHH--HHHHHHHHHH
T ss_pred -HHHhcCcHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHHCCChhhHHH--HHHHHHHHHH
Confidence 223322110 0112334444555555 56666655555443 22222221111111 4556667777
Q ss_pred ccCChhhHHHHHHHHHhccc---------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC------cchHHHHHHHHH
Q 040338 297 HSGPVTKGKHYFTAMAKFTY---------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT------CVIWGALLGACC 360 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~------~~~~~~li~~~~ 360 (385)
+.|++++|..+|+++..... ...+...+-++...|++-.|.+.|++.... |. ......|+.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 88888888888888776433 223333444666688899999999887653 32 224555677765
Q ss_pred hc--CChHHHHHHHHHHHhc
Q 040338 361 SH--YNTKLAELVMRNLLQL 378 (385)
Q Consensus 361 ~~--g~~~~a~~~~~~~~~~ 378 (385)
.. ..++.++.-|+.+.++
T Consensus 247 ~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS--
T ss_pred hCCHHHHHHHHHHHcccCcc
Confidence 42 2344555555554443
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.68 E-value=0.00031 Score=49.68 Aligned_cols=81 Identities=5% Similarity=0.094 Sum_probs=66.8
Q ss_pred HHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCC--------CchHHHH
Q 040338 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG--------FGFETLC 161 (385)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~ 161 (385)
...-|.-+...+++...-.+|+.+++.|+. -|++.+||.++.+.++.. +.-..+.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~-----------------lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLt 90 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGIT-----------------LPSVELYNKVLKSIAKRELDSEDIENKLTNLLT 90 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCC-----------------CCcHHHHHHHHHHHHHccccchhHHHHHHHHHH
Confidence 344566666779999999999999988862 599999999999887653 2345788
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhcC
Q 040338 162 TFIELWNHGFGLSSMLYATAFSARAS 187 (385)
Q Consensus 162 ~~~~m~~~g~~p~~~t~~~ll~~~~~ 187 (385)
+|+.|...+++|+..||+.++..+.+
T Consensus 91 vYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 91 VYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 99999999999999999999987754
No 148
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.68 E-value=0.011 Score=57.41 Aligned_cols=147 Identities=12% Similarity=-0.006 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc---cccc----
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL---FCWK---- 122 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~---- 122 (385)
..|..|-.-|+. ..+..+|.+.|+..-+.. ..+......+.+.|++..+++.|..+.-...+... ..|+
T Consensus 493 paf~~LG~iYrd---~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 493 PAFAFLGQIYRD---SDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 356666666555 457888888888887654 33677888899999999999999998655433221 1111
Q ss_pred -------cchHHHHHHhcCC---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH--HhcCccC
Q 040338 123 -------FGIIRLLIMFQKM---PERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS--ARASVYD 190 (385)
Q Consensus 123 -------~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~ 190 (385)
++...|..-|+.- .+.|...|..|..+|.+.|++..|+++|++... +.|+. +|..... .-+..|.
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGK 645 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhh
Confidence 6666666555443 345788899999999999999999999998865 45533 3322221 2345566
Q ss_pred ccchhhHHHHHHH
Q 040338 191 LEWGPHLHSRVVH 203 (385)
Q Consensus 191 ~~~a~~~~~~~~~ 203 (385)
+.++...++....
T Consensus 646 Ykeald~l~~ii~ 658 (1238)
T KOG1127|consen 646 YKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666665553
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.023 Score=46.60 Aligned_cols=186 Identities=13% Similarity=0.092 Sum_probs=127.7
Q ss_pred hhhhHHHHHhhhC--------CCCh-hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCCh
Q 040338 33 LIDDDYRVFCDIG--------PRYL-FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103 (385)
Q Consensus 33 ~~~~A~~~~~~~~--------~~~~-~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 103 (385)
+.++..+++..+. .++. ..|..++-+. ...|+...|...++.+... ++-+..+-..=.-.+-..|++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAA---ld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAA---LDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 7777777777665 1222 2344444443 3379999999999998876 333333322222334447999
Q ss_pred hHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040338 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183 (385)
Q Consensus 104 ~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 183 (385)
++|.++++.+.+.+ +.|.++|..=+...-..|+..+|++-+.+..+. +..|...|.-+..
T Consensus 103 ~~A~e~y~~lL~dd-------------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLae 162 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-------------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAE 162 (289)
T ss_pred hhHHHHHHHHhccC-------------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 99999999998887 478888888777777888888999888888776 6779999999999
Q ss_pred HhcCccCccchhhHHHHHHHhCCCCchHHH-HHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCC
Q 040338 184 ARASVYDLEWGPHLHSRVVHMEPSLDVFVG-SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRN 262 (385)
Q Consensus 184 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 262 (385)
.|...|++++|.-.+++++=.. |....| ..+.+.+.-.| -..+++-|.+.|..-.+-+
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~--P~n~l~f~rlae~~Yt~g-------------------g~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQ--PFNPLYFQRLAEVLYTQG-------------------GAENLELARKYYERALKLN 221 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHh-------------------hHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998653 333332 22222221111 1235677888887777644
Q ss_pred h
Q 040338 263 M 263 (385)
Q Consensus 263 ~ 263 (385)
.
T Consensus 222 ~ 222 (289)
T KOG3060|consen 222 P 222 (289)
T ss_pred h
Confidence 3
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.60 E-value=0.046 Score=49.83 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHHhccc----C-ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHH
Q 040338 232 IQIGKALVTMYAEGGSTQKADLAFELMSR----R-NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSG 294 (385)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~ 294 (385)
..+|...++.-.+..-++.|..+|.+..+ + ++..++++++-||. ++..-|.++| -....++-
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDF 444 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34567777777788889999999998876 2 66777788877764 3445555555 22334444
Q ss_pred hcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
+.+.++-..+..+|++...... ..+|..+++--..-|++..+.++-+++..
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4555555666666666665533 45666666666666666666666655554
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.57 E-value=0.0026 Score=48.90 Aligned_cols=123 Identities=10% Similarity=0.036 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC--CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGL--SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 219 (385)
.|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+........|+..
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~-------- 84 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK-------- 84 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH--------
Confidence 455556565 4778888888888887752111 12333345566778889999999998888876322211
Q ss_pred HHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC--ChhhHHHHHHHHHhcCCCCchHHH
Q 040338 220 YLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRR--NMISWMVLISAFSQAGVLEKPRFF 285 (385)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~ 285 (385)
....-.+...+...|++++|+..++....+ ....+......|.+.|+.++|...
T Consensus 85 ------------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 85 ------------PLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 112244667777888888998888775443 223344445556666666555544
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.00052 Score=47.74 Aligned_cols=97 Identities=11% Similarity=0.014 Sum_probs=76.5
Q ss_pred HHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-------------------PDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-------------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567778888999999999998876554 24446777888889999999999999999877
Q ss_pred CCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 169 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
.. +.+..++..+...+...|+.+.|...+....+..
T Consensus 63 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 63 LD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred CC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 53 3344677788888899999999999988876543
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.54 E-value=0.02 Score=55.82 Aligned_cols=170 Identities=12% Similarity=-0.018 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHHHHhccCCC-chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 66 GNIKMALHLHGLVKKFYFVSD-ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.+...++..|-...+. .|+ ...|..|...|+..-+...|.+.|+..-+.+ ..+...+.
T Consensus 472 K~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------------------atdaeaaa 530 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------------------ATDAEAAA 530 (1238)
T ss_pred hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------chhhhhHH
Confidence 5566666666555543 333 4678999999999889999999998877665 46777888
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHH--HhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHH
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFS--ARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 221 (385)
.....|++...++.|..+.-.--+ ..| -...++.+-+ .+.+.++...++.-|+...+..+ -|...|..+..+|.
T Consensus 531 a~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~ 607 (1238)
T KOG1127|consen 531 ASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYP 607 (1238)
T ss_pred HHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHH
Confidence 888999999999999888333222 122 2223333322 35677888888888888776643 45666667777777
Q ss_pred hcCCCC-----------CCchh-hHHHHHHHHHHcCCChhHHHHHHHhcc
Q 040338 222 KCGCNG-----------IESSI-QIGKALVTMYAEGGSTQKADLAFELMS 259 (385)
Q Consensus 222 ~~g~~~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 259 (385)
++|... ..|+. ..--......+..|.+.+|...+..+.
T Consensus 608 ~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 608 ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 766555 22221 111122233345567777777766654
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.53 E-value=0.00018 Score=49.46 Aligned_cols=81 Identities=11% Similarity=0.023 Sum_probs=60.5
Q ss_pred cCChHHHHHHHHHHHHhccC-CCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchH
Q 040338 65 VGNIKMALHLHGLVKKFYFV-SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (385)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .+.+ +.+....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------------------~~~~~~~ 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------------------PSNPDIH 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------------------HCHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------------------CCCHHHH
Confidence 58899999999999987542 2455566688999999999999999988 3222 1333444
Q ss_pred HHHHHHHHhCCCchHHHHHHHH
Q 040338 144 NTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~ 165 (385)
-.+..++.+.|++++|+++|++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 4567889999999999999875
No 155
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.015 Score=48.12 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=27.6
Q ss_pred CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 154 GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 154 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
++..+|.-+|++|.++ ..|+..+.+-...++...|++++|..+++..+..
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4455555555555443 4555555555555555555555555555555554
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.50 E-value=0.00075 Score=53.95 Aligned_cols=88 Identities=10% Similarity=0.082 Sum_probs=71.7
Q ss_pred CCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcc----------------Cccchh
Q 040338 137 ERDLVSWNTMISILTRH-----GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY----------------DLEWGP 195 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~ 195 (385)
..|-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 56778888888888754 677778889999999999999999999999876532 356788
Q ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
+++++|...|+-||..++..|++.+++.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 99999999999888888877777776554
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.47 E-value=0.0016 Score=47.89 Aligned_cols=103 Identities=12% Similarity=-0.052 Sum_probs=76.6
Q ss_pred hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
.++..+...+.+.|++++|.+.|+++.+.... .......+..+..++.+.|++++|...|+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK----------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45667778888899999999999888654320 01123456668888999999999999999987
Q ss_pred HCCCC--CCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 168 NHGFG--LSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 168 ~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
..... .....+..+..++.+.|+.++|.+.++++.+..+
T Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 67 KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 64211 1244566777788889999999999999988854
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00025 Score=45.94 Aligned_cols=60 Identities=18% Similarity=0.097 Sum_probs=49.3
Q ss_pred HHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 323 MVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+...+.+.|++++|.+.|++..+. | +...+..+..++...|++++|...++++++..|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456788899999999999998875 5 55678888899999999999999999999888765
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.0083 Score=56.03 Aligned_cols=244 Identities=10% Similarity=0.044 Sum_probs=123.1
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh-ccCC--------CchHHHhHHHHHHhcCCh
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF-YFVS--------DESIAKSSIDMHVKCGAV 103 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~-g~~~--------~~~~~~~li~~~~~~g~~ 103 (385)
.+++|.++.+. .|.+..|..+...... .-.++.|...|-..... |++. +.+.-.+=|.+| -|++
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~---Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~f 750 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALF---KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEF 750 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHH---HHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcch
Confidence 45555555554 4556667766555333 56666676666555432 2211 011111111222 3556
Q ss_pred hHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC----CHhhHH
Q 040338 104 DYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGL----SSMLYA 179 (385)
Q Consensus 104 ~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~t~~ 179 (385)
++|+++|-+|-.++. .|..+.+.|+|-.+.++++.- |-.. -...++
T Consensus 751 eeaek~yld~drrDL---------------------------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r 800 (1189)
T KOG2041|consen 751 EEAEKLYLDADRRDL---------------------------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFR 800 (1189)
T ss_pred hHhhhhhhccchhhh---------------------------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHH
Confidence 666666544433332 455666667776655555321 1111 123455
Q ss_pred HHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcc
Q 040338 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259 (385)
Q Consensus 180 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 259 (385)
.+-..+.....+++|.+.+..-... ...+.++.+..++++-+.+-..++
T Consensus 801 ~ig~~fa~~~~We~A~~yY~~~~~~-------------------------------e~~~ecly~le~f~~LE~la~~Lp 849 (1189)
T KOG2041|consen 801 NIGETFAEMMEWEEAAKYYSYCGDT-------------------------------ENQIECLYRLELFGELEVLARTLP 849 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch-------------------------------HhHHHHHHHHHhhhhHHHHHHhcC
Confidence 5555555555666666555543211 233444444445555544444444
Q ss_pred cCChhhHHHHHHHHHhcCCCCchHHHH----HHHHHHHHhcccCChhhHHHHHHHHHhccc-------------hhhHHH
Q 040338 260 RRNMISWMVLISAFSQAGVLEKPRFFF----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-------------TCYFVC 322 (385)
Q Consensus 260 ~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~ 322 (385)
+ |....-.+.+.+.+.|.-++|.+.+ .-...+.+|...++|.+|.++-+...-... ..-..-
T Consensus 850 e-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~e 928 (1189)
T KOG2041|consen 850 E-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHME 928 (1189)
T ss_pred c-ccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHH
Confidence 2 3333444555555555555555544 222345666677777776666554322111 111112
Q ss_pred HHHHHHccCCHHHHHHHHHhCCC
Q 040338 323 MVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
-|..+.++|+.-+|-+++.+|.+
T Consensus 929 aIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 929 AIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHhhhcccchhHHHHHHHHhH
Confidence 36667788888888888888866
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.41 E-value=0.0031 Score=54.52 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHhccc-CChhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHH
Q 040338 266 WMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHS-GPVTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEA 336 (385)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A 336 (385)
|...+..|...|++..|-. .+..+...|-.. |+++.|.+.|++...... ...+..+...+.+.|++++|
T Consensus 97 ~~~A~~~y~~~G~~~~aA~--~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAK--CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHH--HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHhcCcHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 3333444444444444332 567888888888 999999999998877533 66677788899999999999
Q ss_pred HHHHHhCCCC----C----Ccc-hHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 337 KKLIDEMPSK----P----TCV-IWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 337 ~~~~~~m~~~----p----~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
.++|+++... + +.. .|-..+-++...||...|.+.+++..+..|.
T Consensus 175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999987542 2 111 2233344566679999999999999877653
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.40 E-value=0.032 Score=50.77 Aligned_cols=175 Identities=10% Similarity=-0.041 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCC-CcchHHHH
Q 040338 68 IKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER-DLVSWNTM 146 (385)
Q Consensus 68 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l 146 (385)
.+.....++.+...-..--..+|..+|+.-.+..-++.|..+|.+..+... .+ ++.+++++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r------------------~~hhVfVa~A~ 408 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR------------------TRHHVFVAAAL 408 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC------------------CcchhhHHHHH
Confidence 445555666665542222345688889999999999999999999877654 34 78899999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhhH-HHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 040338 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLY-ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225 (385)
Q Consensus 147 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 225 (385)
|..|| .++.+-|.++|+.-.+. -+|...| ..-+..++..++-..+..+|+..+..++.|+.
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k--------------- 470 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK--------------- 470 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh---------------
Confidence 99888 56788999999886554 3454444 35677788899999999999999998776654
Q ss_pred CCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-------CChhhHHHHHHHHHhcCCCCchH
Q 040338 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-------RNMISWMVLISAFSQAGVLEKPR 283 (385)
Q Consensus 226 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~a~ 283 (385)
...+|..+|.--..-|++..+.++-+.+.. +....-..+++-|.-.+....-.
T Consensus 471 -----s~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 471 -----SKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred -----hHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 335678888888888899988888776643 22234445566666555554433
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0026 Score=54.80 Aligned_cols=131 Identities=12% Similarity=0.127 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHH
Q 040338 233 QIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMA 312 (385)
Q Consensus 233 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (385)
.+|-.+++..-+.+.++.|..+|.+..+.+..+|...+. .++++ +...++.+.|..+|+...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~-----------------~A~~E-~~~~~d~~~A~~Ife~gl 63 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVA-----------------YALME-YYCNKDPKRARKIFERGL 63 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHH-----------------HHHHH-HHTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHH-----------------HHHHH-HHhCCCHHHHHHHHHHHH
Confidence 356677777777778999999999988644434333221 11221 122456677999999988
Q ss_pred hccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCc----chHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 313 KFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTC----VIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 313 ~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
+... ...+...++.+.+.|+.+.|..+|++.... |.. ..|...+..-.+.|+.+.+..+.+++.+.-+.
T Consensus 64 k~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 64 KKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 8777 788899999999999999999999999886 433 48999999999999999999999998876443
No 163
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.38 E-value=0.083 Score=46.28 Aligned_cols=98 Identities=13% Similarity=0.028 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhcCCCCchHHHH---------HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHH
Q 040338 265 SWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE 335 (385)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 335 (385)
+.+..|.-+...|+...|.++- .|-..+.+++..++|++..++-.. ...+.-|..+++.+.+.|+..+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCCCHHH
Confidence 4555677777888888887777 788888999999999887776443 2237778888899999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 040338 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVM 372 (385)
Q Consensus 336 A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 372 (385)
|.+++..+.. ..-+..|.+.|++.+|.+..
T Consensus 256 A~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 256 ASKYIPKIPD-------EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHhCCh-------HHHHHHHHHCCCHHHHHHHH
Confidence 9998877442 45566667777776665553
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0012 Score=58.98 Aligned_cols=91 Identities=10% Similarity=-0.050 Sum_probs=70.1
Q ss_pred HHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHH
Q 040338 293 SGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLA 368 (385)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a 368 (385)
..+...|+++.|++.|+++.+..+ ...+..+..+|.+.|++++|+..+++.... | +...|..+..+|...|++++|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 344567788888888888887777 667777788888888888888888887653 3 455777788888888888888
Q ss_pred HHHHHHHHhccccCC
Q 040338 369 ELVMRNLLQLDVKVF 383 (385)
Q Consensus 369 ~~~~~~~~~~~~~~~ 383 (385)
...+++.++.+|.++
T Consensus 90 ~~~~~~al~l~P~~~ 104 (356)
T PLN03088 90 KAALEKGASLAPGDS 104 (356)
T ss_pred HHHHHHHHHhCCCCH
Confidence 888888888777653
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.35 E-value=0.00065 Score=46.67 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=60.0
Q ss_pred cCChhhHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCChHHHHHHH
Q 040338 298 SGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP-TCVIWGALLGACCSHYNTKLAELVM 372 (385)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 372 (385)
.|+++.|+.+++++.+..+ ...+..+..+|.+.|++++|..+++.....| +....-.+..+|.+.|++++|++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5789999999999998877 2344457899999999999999999832223 3345556688999999999999999
Q ss_pred HH
Q 040338 373 RN 374 (385)
Q Consensus 373 ~~ 374 (385)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 86
No 166
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.019 Score=47.13 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=124.9
Q ss_pred CCChHHHHHHHHHHHHc---c-cchhhHHh------------hhhhHHHHHhhhC--CCCh---h-hHHHHHHHHHhhhc
Q 040338 7 LKSLPIARKIHAQLIST---C-LISSIFLQ------------LIDDDYRVFCDIG--PRYL---F-TYNTMINGGVRCLC 64 (385)
Q Consensus 7 ~~~~~~a~~~~~~~~~~---~-~~~~~~~~------------~~~~A~~~~~~~~--~~~~---~-~~~~li~~~~~~~~ 64 (385)
.++.++..+++.++... | ..++.|+- +.+.|...++.+. -|++ . .+..++.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa------ 98 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEA------ 98 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHH------
Confidence 35667777777777633 3 66676664 8888888888765 2332 2 22233333
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|+.++|.++++.+.+.. +.|..++.-=+-..-..|+-.+|++-+....+.- ..|...|.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-------------------~~D~EAW~ 158 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-------------------MNDQEAWH 158 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-------------------cCcHHHHH
Confidence 799999999999999986 5577788777777777788888888776665444 47899999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-hhHHHHHHHhcCc---cCccchhhHHHHHHHhCCC
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSS-MLYATAFSARASV---YDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~ 207 (385)
-|-..|...|++++|.-.++++.-. .|.. .-|..+...+... .+.+.+.+.|...++....
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 9999999999999999999999874 6644 4444555554433 4567788889888887653
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.30 E-value=0.063 Score=51.85 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=71.6
Q ss_pred hcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHH--HhCCCchHHHHHHHHHHHCCCCCCHh
Q 040338 99 KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL--TRHGFGFETLCTFIELWNHGFGLSSM 176 (385)
Q Consensus 99 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~ 176 (385)
..+++..|.+-.+++.++ .||. .|...+.++ .+.|+.++|..+++.....+.. |..
T Consensus 21 d~~qfkkal~~~~kllkk--------------------~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~ 78 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------------------HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDL 78 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------------------CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chH
Confidence 346666776666665443 2443 344555544 6889999999999888765444 888
Q ss_pred hHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 177 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
|...+-.+|.+.++.++|..+|++..+..+ +......+..+|.|.+
T Consensus 79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P--~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 79 TLQFLQNVYRDLGKLDEAVHLYERANQKYP--SEELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCC--cHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987653 3554444555554433
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.30 E-value=0.0049 Score=55.18 Aligned_cols=98 Identities=5% Similarity=-0.052 Sum_probs=79.9
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|+++.|+..+++.++.. +-+...|..+..+|.+.|++++|+..+++..+.+ +.+...|.
T Consensus 15 ~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------------------P~~~~a~~ 74 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-------------------PSLAKAYL 74 (356)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------cCCHHHHH
Confidence 799999999999999875 3367788888899999999999999998887665 35677888
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 184 (385)
.+..+|...|++++|+..|++..+. .|+......++..
T Consensus 75 ~lg~~~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 75 RKGTACMKLEEYQTAKAALEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 8999999999999999999999874 5655554444433
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.22 E-value=0.0082 Score=47.67 Aligned_cols=125 Identities=14% Similarity=0.035 Sum_probs=84.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHH
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 216 (385)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677888889999999999999999987543332 457788888999999999999999999886432 23344444
Q ss_pred HHHHHhcCCCCCCchhhHHHHHHHHHHcCCC-------hhHHHHHHHhcccCChhhHHHHHHHHHhcCCC
Q 040338 217 IDMYLKCGCNGIESSIQIGKALVTMYAEGGS-------TQKADLAFELMSRRNMISWMVLISAFSQAGVL 279 (385)
Q Consensus 217 i~~~~~~g~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 279 (385)
...|...|+.. ...|+ +++|.++++.....+...|..++..+...|+.
T Consensus 113 g~~~~~~g~~~---------------~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (172)
T PRK02603 113 AVIYHKRGEKA---------------EEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHcCChH---------------hHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCcc
Confidence 44444433211 11122 46677777776666666677777777666653
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.17 E-value=0.0009 Score=43.73 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=42.4
Q ss_pred ccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHH
Q 040338 297 HSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGAL 355 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~l 355 (385)
..|++++|.++|+.+....+ ......+..+|.+.|++++|.++++.+... |+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 46778888888888777776 666667888888888888888888887764 664444443
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.14 E-value=0.0035 Score=53.20 Aligned_cols=97 Identities=9% Similarity=-0.082 Sum_probs=76.8
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC----cchHHHHH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT----CVIWGALL 356 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~----~~~~~~li 356 (385)
.|...+....+.|++++|...|+.+.+..+ +..+.-+...|...|++++|...|+.+... |+ ...+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444566889999999999998877 457777899999999999999999999764 43 33445566
Q ss_pred HHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 357 GACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 357 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
..+...|+.++|...++++++..|...
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 778899999999999999998887653
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.08 E-value=0.051 Score=45.75 Aligned_cols=185 Identities=10% Similarity=-0.063 Sum_probs=106.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh--hHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHh
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSM--LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 222 (385)
.....+.+.|++++|.+.|+++...-..+... ..-.+..++.+.+++++|...+++.++..+.....-|.-.+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 34455677899999999999998853222111 1235667889999999999999999998765544454444444332
Q ss_pred --cCCCCCCchhhHHHHHHHHHHc----CCC---hhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040338 223 --CGCNGIESSIQIGKALVTMYAE----GGS---TQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFFFFVSL 291 (385)
Q Consensus 223 --~g~~~~~~~~~~~~~li~~~~~----~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l 291 (385)
.+. ..+..+.. ..| ..+|+..|+.+.+ |+.. |.....-....-+-.-|. .--.+
T Consensus 117 ~~~~~-----------~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-ya~~A~~rl~~l~~~la~---~e~~i 181 (243)
T PRK10866 117 MALDD-----------SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-YTTDATKRLVFLKDRLAK---YELSV 181 (243)
T ss_pred hhcch-----------hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-hHHHHHHHHHHHHHHHHH---HHHHH
Confidence 110 00001100 011 2234445555444 3221 100000000000000000 11134
Q ss_pred HHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCC
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
..-|.+.|.+..|..-++.+.+..+ ......++.+|...|..++|.++.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556777888888888888887777 6666778899999999999988776543
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.08 E-value=0.02 Score=45.21 Aligned_cols=124 Identities=9% Similarity=-0.071 Sum_probs=81.5
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC--CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGL--SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..++....... .....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 4567778888889999999999999998753333 235788888899999999999999999987632 2233343443
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHH-------HHHHHhcccCChhhHHHHHHHHHhcCCC
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKA-------DLAFELMSRRNMISWMVLISAFSQAGVL 279 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A-------~~~~~~m~~~~~~~~~~li~~~~~~g~~ 279 (385)
..+. .+.+.+...|+++.| ..+|+.....+...+......+...|++
T Consensus 114 ~i~~---------------~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 114 VICH---------------YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred HHHH---------------HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 3333 223344577777744 4445455445555555555545544443
No 174
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.07 E-value=0.0058 Score=47.00 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHh--cc-CCCc------------------hHHHhHHHHHHhcCChhHHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKF--YF-VSDE------------------SIAKSSIDMHVKCGAVDYAES 108 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~--g~-~~~~------------------~~~~~li~~~~~~g~~~~a~~ 108 (385)
..|..++.........++.+.+...+.++... |. -|+. .+...++..+...|++++|.+
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 34444544333233356777777777777653 21 1111 112233334444555555555
Q ss_pred HHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH-----CCCCCCHhh
Q 040338 109 AFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN-----HGFGLSSML 177 (385)
Q Consensus 109 ~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t 177 (385)
+++++...+ +.|...|-.+|.+|...|+..+|.++|+++.+ .|+.|+..|
T Consensus 84 ~~~~~l~~d-------------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 84 LLQRALALD-------------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHS-------------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHhcC-------------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 555554444 24555555666666666666666655555432 355555443
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.02 E-value=0.0059 Score=48.50 Aligned_cols=96 Identities=8% Similarity=0.005 Sum_probs=68.7
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGAC 359 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~ 359 (385)
.+..+...+...|++++|...|++..+... ...+..+...+.+.|++++|.+.+++.... | +...+..+...|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 455555666667777777788877765433 356777888889999999999998887763 4 445566677777
Q ss_pred HhcCC--------------hHHHHHHHHHHHhccccC
Q 040338 360 CSHYN--------------TKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 360 ~~~g~--------------~~~a~~~~~~~~~~~~~~ 382 (385)
...|+ +++|.+.+++....+|.+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 77766 567778888777776653
No 176
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.02 E-value=0.22 Score=44.23 Aligned_cols=211 Identities=12% Similarity=-0.027 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHhccCCC---chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHH
Q 040338 69 KMALHLHGLVKKFYFVSD---ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNT 145 (385)
Q Consensus 69 ~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (385)
++..+.+..|.++=-.|+ ..+.-.++-.|....+++...++++.+...... + . .....+--.
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~-------------~-~-~~~~~i~~~ 184 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTC-------------D-V-ANQHNIKFQ 184 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc-------------c-h-hcchHHHHH
Confidence 444455555555421222 333345555788889999999999998764210 0 0 112222223
Q ss_pred HHHHHHh---CCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHh
Q 040338 146 MISILTR---HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLK 222 (385)
Q Consensus 146 li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 222 (385)
...++.+ .|+.++|++++..+....-.++..||..+.+.|-+. -..+...+......-+.+|.+
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~-------------~~~s~~~d~~~ldkAi~~Y~k 251 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL-------------FLESNFTDRESLDKAIEWYRK 251 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-------------HHHcCccchHHHHHHHHHHHH
Confidence 4456667 899999999999977666778888988887665321 111111222233344444443
Q ss_pred cCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChh
Q 040338 223 CGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVT 302 (385)
Q Consensus 223 ~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~ 302 (385)
.=..+ |+...--++...+.-.|.-.+...-..++. ..+-....+.|..+.....|-+.++++++.-.|+.+
T Consensus 252 gFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-------~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ 322 (374)
T PF13281_consen 252 GFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIG-------VKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYE 322 (374)
T ss_pred HHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHH-------HHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHH
Confidence 32222 222222222222333333222111111111 223334567788888888899999999999999999
Q ss_pred hHHHHHHHHHhccc
Q 040338 303 KGKHYFTAMAKFTY 316 (385)
Q Consensus 303 ~a~~~~~~~~~~~~ 316 (385)
+|.+..+.|.+..+
T Consensus 323 ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 323 KAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999999988765
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.01 E-value=0.0024 Score=53.57 Aligned_cols=88 Identities=16% Similarity=0.073 Sum_probs=56.7
Q ss_pred cccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHH
Q 040338 296 SHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELV 371 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~ 371 (385)
.+.+++.+|...|.+.++..+ ...|.--..+|++.|.++.|++-.+....- | -..+|.+|..+|...|++.+|.+.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 345666666666777666666 555666666677777777776666665542 3 244677777777777777777777
Q ss_pred HHHHHhccccCC
Q 040338 372 MRNLLQLDVKVF 383 (385)
Q Consensus 372 ~~~~~~~~~~~~ 383 (385)
|++.++.+|.+.
T Consensus 172 ykKaLeldP~Ne 183 (304)
T KOG0553|consen 172 YKKALELDPDNE 183 (304)
T ss_pred HHhhhccCCCcH
Confidence 777766666543
No 178
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.99 E-value=0.15 Score=45.19 Aligned_cols=187 Identities=11% Similarity=-0.071 Sum_probs=113.3
Q ss_pred CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhc---cCCCchHHHhHHHHHHh---cCChhHHHHHHHhccCCCcc
Q 040338 46 PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFY---FVSDESIAKSSIDMHVK---CGAVDYAESAFLRMLNPSLF 119 (385)
Q Consensus 46 ~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~ 119 (385)
.|+..+-..++.-+..+....+++...++.+.+.... +.-...+-....-++.+ .|+-++|++++..+..+..
T Consensus 135 ~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~- 213 (374)
T PF13281_consen 135 DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE- 213 (374)
T ss_pred CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC-
Confidence 3444444445554444555899999999999998741 11123333345567777 8999999999988543333
Q ss_pred ccccchHHHHHHhcCCCCCCcchHHHHHHHHHh---------CCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccC
Q 040338 120 CWKFGIIRLLIMFQKMPERDLVSWNTMISILTR---------HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190 (385)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 190 (385)
.++..+|..+...|-. ....++|++.|.+--+. .||..+=-.+...+.-.|.
T Consensus 214 -----------------~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 214 -----------------NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGH 274 (374)
T ss_pred -----------------CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCC
Confidence 5777788777765432 22467788888876553 4655443333333333333
Q ss_pred ccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCCh
Q 040338 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNM 263 (385)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 263 (385)
..+...-.+++. ..+-..+.+.|..+...+--.+.+++.+..-.|+.++|.+..+.|.+.+.
T Consensus 275 ~~~~~~el~~i~-----------~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 275 DFETSEELRKIG-----------VKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccchHHHHHHH-----------HHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 222221111111 12223344555555555666677888899999999999999999986433
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.96 E-value=0.016 Score=45.76 Aligned_cols=95 Identities=17% Similarity=0.021 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCC--CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVS--DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIR 127 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (385)
..|..+...+.. .|++++|...++........+ ...++..+..+|...|+.++|+..+++..+..
T Consensus 36 ~~~~~~g~~~~~---~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---------- 102 (168)
T CHL00033 36 FTYYRDGMSAQS---EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---------- 102 (168)
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence 344555555444 899999999999998764332 23578889999999999999999998876543
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHH-------hCCCchHHHHHHHHH
Q 040338 128 LLIMFQKMPERDLVSWNTMISILT-------RHGFGFETLCTFIEL 166 (385)
Q Consensus 128 a~~~~~~~~~~~~~~~~~li~~~~-------~~~~~~~a~~~~~~m 166 (385)
+....+++.+...+. ..|+++.|+..+++.
T Consensus 103 ---------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 103 ---------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred ---------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 234455666666666 677777665555543
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.95 E-value=0.17 Score=42.60 Aligned_cols=176 Identities=12% Similarity=0.079 Sum_probs=118.1
Q ss_pred HHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcc
Q 040338 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMS 259 (385)
Q Consensus 180 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 259 (385)
.....+...|++++|.+.|+.+....+.+..... ..-.+..++.+.+++++|...+++..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~--------------------a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQ--------------------VQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH--------------------HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444556789999999999999987553322111 12345677888999999999999987
Q ss_pred c--CC--hhhHHHHHHHHHh--cC---------------CCCchHHHH-HHHHHHHHhcccCChhhHHHHHHHHHhccch
Q 040338 260 R--RN--MISWMVLISAFSQ--AG---------------VLEKPRFFF-FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYT 317 (385)
Q Consensus 260 ~--~~--~~~~~~li~~~~~--~g---------------~~~~a~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 317 (385)
+ |+ -..|...+.+.+. .+ +...+.+-+ .+..++.-|-.+.-..+|...+..+...--
T Consensus 97 ~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la- 175 (243)
T PRK10866 97 RLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA- 175 (243)
T ss_pred HhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH-
Confidence 6 32 2334444444331 11 111233333 677888888877777777766665543322
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcc----hHHHHHHHHHhcCChHHHHHHHHHHH
Q 040338 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCV----IWGALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
..--...+.|.+.|++..|..-++.+.++ |+.. ..-.++.+|...|..++|....+-+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 22224667789999999999999998876 5443 45578899999999999998876654
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.92 E-value=0.0067 Score=46.31 Aligned_cols=82 Identities=7% Similarity=0.007 Sum_probs=45.9
Q ss_pred ChhhHHHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHH
Q 040338 262 NMISWMVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLL 327 (385)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~ 327 (385)
+......+..-+...|++++|..+| -|-.|..+|...|++++|+..|.......+ +..+-.+..++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3334444444445555555555554 344455555555666666666666655555 55555566666
Q ss_pred HccCCHHHHHHHHHhC
Q 040338 328 GLSGLLGEAKKLIDEM 343 (385)
Q Consensus 328 ~~~g~~~~A~~~~~~m 343 (385)
...|+.+.|.+-|+..
T Consensus 114 L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 114 LACDNVCYAIKALKAV 129 (157)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6666666666666543
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.91 E-value=0.023 Score=52.72 Aligned_cols=211 Identities=14% Similarity=0.056 Sum_probs=115.0
Q ss_pred HHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHH
Q 040338 143 WNTMISILTRHGF--GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220 (385)
Q Consensus 143 ~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 220 (385)
++..=.+|.+..+ +-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|-++|.+ .|.+.. .+.+|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~enR------AlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHENR------ALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCchhh------HHHHH
Confidence 4555566665544 44556667778888888887653 3345556778777777654 343211 11111
Q ss_pred HhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHHHhcCCCCchHHHH------------
Q 040338 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAFSQAGVLEKPRFFF------------ 286 (385)
Q Consensus 221 ~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~------------ 286 (385)
.... +| -...-+...|..++-..+.++=.+ .|+.--.+-.+.+...|+.++|..+.
T Consensus 669 TDlR---------MF-D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI 738 (1081)
T KOG1538|consen 669 TDLR---------MF-DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDI 738 (1081)
T ss_pred HHHH---------HH-HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHH
Confidence 1100 00 011112222222222222211110 11111123345566777777777766
Q ss_pred ----------HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcc-----
Q 040338 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCV----- 350 (385)
Q Consensus 287 ----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~----- 350 (385)
+...+..-+.+...+..|.++|.+|.. ..++++.....++|++|..+-+..++- ||+.
T Consensus 739 ~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaq 812 (1081)
T KOG1538|consen 739 ARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQ 812 (1081)
T ss_pred HhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------HHHHhhheeecccchHhHhhhhhCccccccccchHHH
Confidence 222333333334444555555555432 345777888899999999999888773 4432
Q ss_pred ------hHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 351 ------IWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 351 ------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
-|...-.+|.+.|+..+|.++++++....+.
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhh
Confidence 3445667899999999999999998765443
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.89 E-value=0.058 Score=41.30 Aligned_cols=85 Identities=8% Similarity=-0.197 Sum_probs=68.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|..+|+.+....+. +..-|-.|.-++-..|++++|+..|......+ +.|..++-
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-------------------~ddp~~~~ 107 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-------------------IDAPQAPW 107 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------------CCCchHHH
Confidence 79999999999998886432 55666777777778899999999998876655 46777888
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 145 TMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
.+-.++...|+.+.|.+.|+.....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888899999999999998877654
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.87 E-value=0.033 Score=40.88 Aligned_cols=110 Identities=9% Similarity=-0.020 Sum_probs=76.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC--HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 040338 146 MISILTRHGFGFETLCTFIELWNHGFGLS--SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223 (385)
Q Consensus 146 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 223 (385)
+-.++-..|+.++|+.+|++....|+... ...+-.+.+.+...|++++|..+++......+.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~------------- 73 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL------------- 73 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-------------
Confidence 34566778999999999999999887765 345566777888999999999999988876432111
Q ss_pred CCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHh
Q 040338 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQ 275 (385)
Q Consensus 224 g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 275 (385)
+......+..++...|+.++|+..+-...-++...|..-|..|..
T Consensus 74 -------~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 74 -------NAALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFYAD 118 (120)
T ss_pred -------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111112233466677888888888876665666677666666653
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.85 E-value=0.023 Score=53.30 Aligned_cols=142 Identities=9% Similarity=-0.077 Sum_probs=97.2
Q ss_pred CCchhhHHHHHHHHHHcCC-----ChhHHHHHHHhccc--CC-hhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccC
Q 040338 228 IESSIQIGKALVTMYAEGG-----STQKADLAFELMSR--RN-MISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSG 299 (385)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~ 299 (385)
.+.+...|...+++..... +.+.|..+|++..+ |+ ...|..+..++.....+... ...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~--------------~~~ 398 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPL--------------DEK 398 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCc--------------cHH
Confidence 4566677888877765432 36789999988876 43 34555554444332222110 011
Q ss_pred ChhhHHHHHHHHHhc--cc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 040338 300 PVTKGKHYFTAMAKF--TY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KPTCVIWGALLGACCSHYNTKLAELVMRN 374 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 374 (385)
++..+.+........ .. +..+.++.-.....|++++|...+++... +|+...|..+...|...|+.++|.+.+++
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 234444444443332 11 56677776667778999999999999887 48888999999999999999999999999
Q ss_pred HHhccccCC
Q 040338 375 LLQLDVKVF 383 (385)
Q Consensus 375 ~~~~~~~~~ 383 (385)
...++|.++
T Consensus 479 A~~L~P~~p 487 (517)
T PRK10153 479 AFNLRPGEN 487 (517)
T ss_pred HHhcCCCCc
Confidence 999998865
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.84 E-value=0.0041 Score=40.15 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
...+.+.|++++|.+.|++..+.+ +.+...+..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-------------------PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666777777777777766655 24566666677777777777777777777655
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.80 E-value=0.0099 Score=51.27 Aligned_cols=131 Identities=16% Similarity=0.080 Sum_probs=72.0
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHh-hhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHH
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 111 (385)
.++.|+.+|.+.......+|...+....- ....++.+.|.++|+...+. ++.+...|...++.+.+.++.+.|..+|+
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 66777777776654333333333321111 11146666677777777665 45566667777777777777777777777
Q ss_pred hccCCCccccccchHHHHHHhcCCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040338 112 RMLNPSLFCWKFGIIRLLIMFQKMPER-DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183 (385)
Q Consensus 112 ~m~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 183 (385)
+....-. ... ....|...+..=.+.|+.+.+.++.+++.+. -|+......+++
T Consensus 95 r~i~~l~-----------------~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 95 RAISSLP-----------------KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHCCTSS-----------------CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHhcC-----------------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 6654311 011 2346777777777777777777777777663 444444444443
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.76 E-value=0.0028 Score=55.36 Aligned_cols=236 Identities=11% Similarity=-0.027 Sum_probs=137.3
Q ss_pred hHHHHH--HHHHhCCCchHHHHHHHHHHHCCCC---CCHhhHHHHHHHhcCccCccchhhHHHHHHH----hCCCCc-h-
Q 040338 142 SWNTMI--SILTRHGFGFETLCTFIELWNHGFG---LSSMLYATAFSARASVYDLEWGPHLHSRVVH----MEPSLD-V- 210 (385)
Q Consensus 142 ~~~~li--~~~~~~~~~~~a~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~- 210 (385)
++...+ .-+|+.|+....+.+|+...+.|.. .=...|..|-++|.-.+++++|.+++..=+- .|-+.. .
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 444444 3468888888888888888877633 2234566667777777788888776543210 010000 0
Q ss_pred ------------HHHHHHHHHHHhcCCCC-----CCchhhHHHHHHHHHHcCCC--------------------hhHHHH
Q 040338 211 ------------FVGSGLIDMYLKCGCNG-----IESSIQIGKALVTMYAEGGS--------------------TQKADL 253 (385)
Q Consensus 211 ------------~~~~~li~~~~~~g~~~-----~~~~~~~~~~li~~~~~~g~--------------------~~~A~~ 253 (385)
-.|+..+.++.+.=++. .......+-.+...|...|+ ++.|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 01111111111110000 12223344455555554432 223444
Q ss_pred HHHhccc---------CChhhHHHHHHHHHhcCCCCchHHHH------------------HHHHHHHHhcccCChhhHHH
Q 040338 254 AFELMSR---------RNMISWMVLISAFSQAGVLEKPRFFF------------------FFVSLLSGCSHSGPVTKGKH 306 (385)
Q Consensus 254 ~~~~m~~---------~~~~~~~~li~~~~~~g~~~~a~~~~------------------~~~~l~~~~~~~~~~~~a~~ 306 (385)
+|.+=.+ .-...|..|...|.-.|+++.|+..- ++..+..++.-.|+++.|.+
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 4432211 01235555556666667777776554 78888888888999999988
Q ss_pred HHHHHHhcc----c----hhhHHHHHHHHHccCCHHHHHHHHHhCCC-------C-CCcchHHHHHHHHHhcCChHHHHH
Q 040338 307 YFTAMAKFT----Y----TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-------K-PTCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 307 ~~~~~~~~~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~-p~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
.|+.....- . ....-+|...|.-...++.|+..+.+-.. . -....|-+|.++|...|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 887654322 2 44555677777777788888887754432 1 455678889999999999999988
Q ss_pred HHHHHHh
Q 040338 371 VMRNLLQ 377 (385)
Q Consensus 371 ~~~~~~~ 377 (385)
+.+.-++
T Consensus 337 fae~hl~ 343 (639)
T KOG1130|consen 337 FAELHLR 343 (639)
T ss_pred HHHHHHH
Confidence 8776554
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.76 E-value=0.0022 Score=42.02 Aligned_cols=63 Identities=16% Similarity=0.010 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcC-ChHHHHHHHHHHHhccc
Q 040338 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHY-NTKLAELVMRNLLQLDV 380 (385)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~ 380 (385)
..+..+...+...|++++|+..|++..+. | +...|..+..+|...| ++++|++.+++.++.+|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667778888888899998888887763 4 5567888888888888 68999999988887765
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.72 E-value=0.0062 Score=39.68 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=44.9
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCC
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (385)
.|++++|.++|+.+.+.. +-+...+..+..+|.+.|++++|.++++++...+
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 799999999999999875 3377888889999999999999999999887655
No 191
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.69 E-value=0.012 Score=49.03 Aligned_cols=117 Identities=9% Similarity=-0.014 Sum_probs=90.4
Q ss_pred hhhhHHHHHhhhC--CCChhhHHHHHHHHHhh--hccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcC-------
Q 040338 33 LIDDDYRVFCDIG--PRYLFTYNTMINGGVRC--LCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG------- 101 (385)
Q Consensus 33 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g------- 101 (385)
++-...+.|...+ ++|-.+|-+++..|..- .++++++-....+..|.+.|+.-|..+|+.||+.+-+..
T Consensus 49 ~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 49 SLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred cccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHH
Confidence 4444556677666 67888899999888753 446888888999999999999999999999999886643
Q ss_pred ---------ChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCch-HHHHHHHHHH
Q 040338 102 ---------AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGF-ETLCTFIELW 167 (385)
Q Consensus 102 ---------~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~ 167 (385)
+-+-+++++++|...|+ -||-.+-..|++++.+.+.+- +..+++-.|-
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGV------------------mPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGV------------------MPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCC------------------CCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 23446778888888887 799999999999999888654 3444444443
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.63 E-value=0.091 Score=49.44 Aligned_cols=141 Identities=9% Similarity=-0.064 Sum_probs=98.2
Q ss_pred CCChhhHHHHHHHHHhhh--ccCChHHHHHHHHHHHHhccCCC-chHHHhHHHHHHhcCC--------hhHHHHHHHhcc
Q 040338 46 PRYLFTYNTMINGGVRCL--CVGNIKMALHLHGLVKKFYFVSD-ESIAKSSIDMHVKCGA--------VDYAESAFLRML 114 (385)
Q Consensus 46 ~~~~~~~~~li~~~~~~~--~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~--------~~~a~~~~~~m~ 114 (385)
..|...|...+++..... ..+....|..+|++..+. .|+ ...|..+..++..... +..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 567889999999966421 234588999999999986 444 4555555444433211 122222222211
Q ss_pred CCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccch
Q 040338 115 NPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWG 194 (385)
Q Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 194 (385)
... ..+.+...|.++.-.....|++++|...+++.... .|+...|..+...+...|+.++|
T Consensus 412 al~-----------------~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 412 ALP-----------------ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred hcc-----------------cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 110 11345567887766667789999999999999985 57888999999999999999999
Q ss_pred hhHHHHHHHhCCC
Q 040338 195 PHLHSRVVHMEPS 207 (385)
Q Consensus 195 ~~~~~~~~~~~~~ 207 (385)
.+.+++..+..+.
T Consensus 473 ~~~~~~A~~L~P~ 485 (517)
T PRK10153 473 ADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999887654
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.62 E-value=0.0047 Score=40.95 Aligned_cols=59 Identities=12% Similarity=-0.006 Sum_probs=40.6
Q ss_pred HHHHccCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 325 DLLGLSGLLGEAKKLIDEMPSK-P-TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
..|.+.+++++|.++++.+... | +...|......+...|++++|.+.+++..+.+|.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 4566777777777777777663 3 445566677777777777777777777777766543
No 194
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.53 E-value=0.04 Score=40.90 Aligned_cols=94 Identities=11% Similarity=-0.047 Sum_probs=56.5
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCC--CCCCcchHHHHHHHHHhCCCchHHHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM--PERDLVSWNTMISILTRHGFGFETLCTF 163 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 163 (385)
|..++.++|.++++.|+++....+++..=..++......-. +..- ..|+..+..+++.+|+.+|++..|++++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~-----~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~v 75 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD-----YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLV 75 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc-----cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45778889999999999998888887663222100000000 0000 1366666777777777777777777777
Q ss_pred HHHHH-CCCCCCHhhHHHHHHH
Q 040338 164 IELWN-HGFGLSSMLYATAFSA 184 (385)
Q Consensus 164 ~~m~~-~g~~p~~~t~~~ll~~ 184 (385)
+...+ .+++.+..++..|+.=
T Consensus 76 d~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 76 DFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 66644 3555566666666553
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.53 E-value=0.45 Score=44.68 Aligned_cols=95 Identities=8% Similarity=-0.004 Sum_probs=54.5
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH----HHHHHHHHhcccCChhhHHHHHHHHHhccc----------
Q 040338 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY---------- 316 (385)
Q Consensus 251 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------- 316 (385)
+.++-.++...+..+...+..-+.+...+.-|-++| -...++......++|++|..+-+...+.-.
T Consensus 735 lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 735 LIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWL 814 (1081)
T ss_pred HHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccccccccchHHHHh
Confidence 333333333333444444444444455555555555 344556666677777777776666554332
Q ss_pred --hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 317 --TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 317 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
..-|.---++|.++|+-.||.++++++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 22333445677888888888888888765
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.52 E-value=0.58 Score=42.09 Aligned_cols=86 Identities=12% Similarity=0.143 Sum_probs=60.9
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHH-HHHHHHH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWG-ALLGACC 360 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~-~li~~~~ 360 (385)
+|...+.+-.+..-++.|+.+|.+..+.+. ..++++++.-++ .|+...|.++|+-=... ||...|. -.+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 778888888888889999999999999885 667788887766 56677777877644433 5555443 2444455
Q ss_pred hcCChHHHHHHHH
Q 040338 361 SHYNTKLAELVMR 373 (385)
Q Consensus 361 ~~g~~~~a~~~~~ 373 (385)
..++-..|..+|+
T Consensus 478 ~inde~naraLFe 490 (660)
T COG5107 478 RINDEENARALFE 490 (660)
T ss_pred HhCcHHHHHHHHH
Confidence 5666666666666
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.46 E-value=0.055 Score=40.17 Aligned_cols=86 Identities=13% Similarity=-0.031 Sum_probs=71.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHH---------------CCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHH
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWN---------------HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------------~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 203 (385)
|..++.++|.++++.|+.+....+++..-. ..+.|+..+..+++.+|+..+++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788999999999999999999877521 12568899999999999999999999999999988
Q ss_pred h-CCCCchHHHHHHHHHHHhcC
Q 040338 204 M-EPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 204 ~-~~~~~~~~~~~li~~~~~~g 224 (385)
. +++.+..+|..|++......
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 6 67777888888888765544
No 198
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.35 E-value=0.032 Score=46.98 Aligned_cols=96 Identities=8% Similarity=-0.030 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.+++++|+..|.+.++.. +-|.+-|..-..+|++.|..+.|++=.+.....+ +.-..+|.
T Consensus 94 ~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-------------------p~yskay~ 153 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-------------------PHYSKAYG 153 (304)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-------------------hHHHHHHH
Confidence 566777777777776653 2355566666677777777777766665555444 23345677
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 182 (385)
.|-.+|...|++++|++.|.+..+ +.|+-.+|-.=+
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 777777777777777777766655 566665554433
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.33 E-value=0.0076 Score=39.40 Aligned_cols=64 Identities=9% Similarity=0.018 Sum_probs=51.4
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCC-CchHHHHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHG-FGFETLCTFI 164 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~ 164 (385)
+..+|..+...+...|++++|+..|++..+.+ +.+...|..+..++.+.| ++++|++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------------------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------------------PNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------------------TTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------CCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 45678888888888999999999988876655 356778888888888888 6889988888
Q ss_pred HHHH
Q 040338 165 ELWN 168 (385)
Q Consensus 165 ~m~~ 168 (385)
+..+
T Consensus 63 ~al~ 66 (69)
T PF13414_consen 63 KALK 66 (69)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.32 E-value=0.043 Score=40.31 Aligned_cols=85 Identities=15% Similarity=0.026 Sum_probs=63.8
Q ss_pred HHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC---cc-hHHHHHHHHHh
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT---CV-IWGALLGACCS 361 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~---~~-~~~~li~~~~~ 361 (385)
..++-..|+.++|+.+|++....|. ...+-.+...|...|++++|..+|++.... |+ .. ....+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3455667899999999999988876 455666888889999999999999888765 55 22 22334456788
Q ss_pred cCChHHHHHHHHHHH
Q 040338 362 HYNTKLAELVMRNLL 376 (385)
Q Consensus 362 ~g~~~~a~~~~~~~~ 376 (385)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 899999998876543
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.30 E-value=0.17 Score=47.83 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=37.0
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCH--------hhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNH-GFGLSS--------MLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~--------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
.|.+..|..|.....+.-.++-|...|-+.... |++.-. ..-..=+.+| -|.+++|++++-++-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence 466777887776666666666666666554332 222100 0111112222 367888888887776654
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.28 E-value=0.45 Score=38.88 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=54.4
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcc----hHHHHHHHHHh
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCV----IWGALLGACCS 361 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~----~~~~li~~~~~ 361 (385)
.+..++.-|-.+.-..+|...+..+...- ...--.+.+.|.+.|.+..|..-++.+.+. |+.. ..-.++.+|.+
T Consensus 112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 112 EFEELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp HHHHHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 56677777777777777776666654332 222223677789999999999988888775 6554 44678888888
Q ss_pred cCChHHHH
Q 040338 362 HYNTKLAE 369 (385)
Q Consensus 362 ~g~~~~a~ 369 (385)
.|..+.+.
T Consensus 191 l~~~~~a~ 198 (203)
T PF13525_consen 191 LGLKQAAD 198 (203)
T ss_dssp TT-HHHHH
T ss_pred hCChHHHH
Confidence 88877544
No 203
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.23 E-value=0.0051 Score=41.42 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHhCCC-------C-CC-cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPS-------K-PT-CVIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
.+++.+...|...|++++|+..|++..+ . |+ ..++..+...|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566677777777777777777766543 1 32 45677888888888888888888888765
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.21 E-value=0.78 Score=40.30 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=69.3
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~ 366 (385)
+.+..+.-|...|+...|.++-.+. +-+....|-.-+.+|+..++|++..++-.. +.++.-|..++.+|.+.|+..
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F-kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF-KVPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCCCHH
Confidence 6677778888889988888886665 223367788899999999999999987654 335689999999999999999
Q ss_pred HHHHHHHHH
Q 040338 367 LAELVMRNL 375 (385)
Q Consensus 367 ~a~~~~~~~ 375 (385)
+|..+..++
T Consensus 255 eA~~yI~k~ 263 (319)
T PF04840_consen 255 EASKYIPKI 263 (319)
T ss_pred HHHHHHHhC
Confidence 999988774
No 205
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.19 E-value=0.046 Score=45.66 Aligned_cols=88 Identities=8% Similarity=-0.007 Sum_probs=72.0
Q ss_pred CCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcc----------------Cccchh
Q 040338 137 ERDLVSWNTMISILTRH-----GFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY----------------DLEWGP 195 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~ 195 (385)
+.|-.+|-..+..+... +..+-....+..|.+.|+.-|..+|+.|++.+=+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45667777777776543 556667778889999999999999999999876543 345678
Q ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 196 HLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
+++++|...|+.||..+-..|++++++.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 99999999999999999999999998887
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.13 E-value=0.019 Score=38.52 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=39.2
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhc-------cc--hhhHHHHHHHHHccCCHHHHHHHHHhC
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKF-------TY--TCYFVCMVDLLGLSGLLGEAKKLIDEM 343 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (385)
+|+.+...|...|++++|+..+++..+. .. ..++..+...+...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555566666666666555533 11 677888999999999999999999864
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.07 E-value=0.4 Score=37.72 Aligned_cols=109 Identities=9% Similarity=0.048 Sum_probs=66.8
Q ss_pred ChhhHHHHHHHHHhcCCCCchHHHH-------------HHHHHHHHhcccCChhhHHHHHHHHHhccc----hhhHHHHH
Q 040338 262 NMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMV 324 (385)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~li 324 (385)
.+..-..|..+....|+..+|...| ..-.+..+....++...|...++.+.+.++ +..--.+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 3444444555556666666665555 344455555667777777788877777666 55666677
Q ss_pred HHHHccCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChHHHHH
Q 040338 325 DLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
..|...|++.+|+.-|+....- |+...-.....-+.++|..+++..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 7788888888888888777653 444433333333455665554443
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.01 E-value=0.42 Score=42.95 Aligned_cols=133 Identities=12% Similarity=0.046 Sum_probs=98.2
Q ss_pred chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 040338 87 ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIEL 166 (385)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 166 (385)
..+|...|+...+..-++.|..+|-+..+.+.. .+++..++++|..++ .|++.-|.++|+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~-----------------~h~vyi~~A~~E~~~-~~d~~ta~~ifelG 458 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV-----------------GHHVYIYCAFIEYYA-TGDRATAYNIFELG 458 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC-----------------CcceeeeHHHHHHHh-cCCcchHHHHHHHH
Confidence 456778888888888899999999998887743 689999999998887 57788999999876
Q ss_pred HHCCCCCCHhhH-HHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcC
Q 040338 167 WNHGFGLSSMLY-ATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEG 245 (385)
Q Consensus 167 ~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~ 245 (385)
... -||...| .--+..+.+.++-+.|..+|+..+.. +..+ --...|..+|.--..-
T Consensus 459 l~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~--------------------q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 459 LLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKT--------------------QLKRIYDKMIEYESMV 515 (660)
T ss_pred HHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHh--------------------hhhHHHHHHHHHHHhh
Confidence 554 5666665 34566778899999999999965543 1111 0123556677766777
Q ss_pred CChhHHHHHHHhccc
Q 040338 246 GSTQKADLAFELMSR 260 (385)
Q Consensus 246 g~~~~A~~~~~~m~~ 260 (385)
|++..+..+=+.|.+
T Consensus 516 G~lN~v~sLe~rf~e 530 (660)
T COG5107 516 GSLNNVYSLEERFRE 530 (660)
T ss_pred cchHHHHhHHHHHHH
Confidence 788777777666654
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.99 E-value=0.035 Score=36.63 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=34.0
Q ss_pred HHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 95 DMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
..|.+.+++++|.++++++...+ +.+...|.....++.+.|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-------------------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-------------------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------------------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556666666666666665544 245555666666666666666666666666653
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.98 E-value=0.08 Score=43.26 Aligned_cols=177 Identities=12% Similarity=-0.086 Sum_probs=99.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCC-C-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 040338 146 MISILTRHGFGFETLCTFIELWNHGFG-L-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKC 223 (385)
Q Consensus 146 li~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 223 (385)
....+.+.|++.+|...|+.+...-.. | -....-.+..++.+.|+++.|...++.+++.-+.....-+.-.+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344567899999999999999875221 1 23345567888999999999999999999886654443343333332211
Q ss_pred CCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHH---HHHHHHhcCCCCchHHHHHHHHHHHHhccc
Q 040338 224 GCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMV---LISAFSQAGVLEKPRFFFFFVSLLSGCSHS 298 (385)
Q Consensus 224 g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~---li~~~~~~g~~~~a~~~~~~~~l~~~~~~~ 298 (385)
.. +...+......+...+|...|+.+.+ |+..-... .+..+ +.. -|. .--.+..-|.+.
T Consensus 91 ~~---------~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l-~~~---la~---~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 91 KQ---------IPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAEL-RNR---LAE---HELYIARFYYKR 154 (203)
T ss_dssp HH---------HHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHH-HHH---HHH---HHHHHHHHHHCT
T ss_pred Hh---------CccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHH-HHH---HHH---HHHHHHHHHHHc
Confidence 10 00000001222334566666666654 33211100 00000 000 000 112355668888
Q ss_pred CChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHH
Q 040338 299 GPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKK 338 (385)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~ 338 (385)
|.+..|..-++.+.+..+ ......++.+|.+.|..+.|..
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999988877 5666778999999998885543
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.96 E-value=0.025 Score=43.44 Aligned_cols=71 Identities=11% Similarity=-0.087 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHH-----hCCCCchHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH-----MEPSLDVFVG 213 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 213 (385)
+...++..+...|++++|..+.+.+... -+.|...|..+|.++...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4555677788899999999999999885 244888999999999999999999999998864 4888877654
No 212
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.93 E-value=0.18 Score=43.75 Aligned_cols=131 Identities=9% Similarity=0.059 Sum_probs=88.9
Q ss_pred CChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh--c----CChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCC
Q 040338 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK--C----GAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (385)
..+++...+++.|++.|+.-+..+|-+..-.... . ....+|.++|+.|++.-++ +..++
T Consensus 76 ~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f---------------LTs~~ 140 (297)
T PF13170_consen 76 EAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF---------------LTSPE 140 (297)
T ss_pred HHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc---------------ccCcc
Confidence 3467788999999999999888777664444333 2 2456788999999876431 11466
Q ss_pred cchHHHHHHHHHhCCCc----hHHHHHHHHHHHCCCCCC-H-hhHHHHHHHhcCccC--ccchhhHHHHHHHhCCCCchH
Q 040338 140 LVSWNTMISILTRHGFG----FETLCTFIELWNHGFGLS-S-MLYATAFSARASVYD--LEWGPHLHSRVVHMEPSLDVF 211 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~-~-~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 211 (385)
-.++..|+.. ..+++ +.+..+|+.+.+.|+..+ . ...+.++..+....+ ...+.++++.+.+.|+++...
T Consensus 141 D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~ 218 (297)
T PF13170_consen 141 DYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYM 218 (297)
T ss_pred chhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccc
Confidence 6777777655 33333 467788999999897763 3 344445544433333 347888999999999987776
Q ss_pred HH
Q 040338 212 VG 213 (385)
Q Consensus 212 ~~ 213 (385)
.|
T Consensus 219 ~y 220 (297)
T PF13170_consen 219 HY 220 (297)
T ss_pred cc
Confidence 66
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.83 E-value=0.1 Score=47.11 Aligned_cols=114 Identities=11% Similarity=-0.091 Sum_probs=79.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----hhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS----MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 213 (385)
.+...|+.+..+|...|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.++..++.+. ..|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn----~~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN----LKF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc----hhH
Confidence 35678999999999999999999999998874 6764 4689999999999999999999999988621 112
Q ss_pred HHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCC-----hhHHHHHHHhcccC
Q 040338 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS-----TQKADLAFELMSRR 261 (385)
Q Consensus 214 ~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~ 261 (385)
. .+.+..+++.-.+...+..++....+.|. ...-.++..+.+.|
T Consensus 147 ~----~i~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aP 195 (453)
T PLN03098 147 S----TILNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQAP 195 (453)
T ss_pred H----HHHhCcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhch
Confidence 1 12222222222344567777777777764 33344555555554
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.80 E-value=0.17 Score=43.02 Aligned_cols=100 Identities=13% Similarity=-0.002 Sum_probs=70.4
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCC--chHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSD--ESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 51 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
.|+..+..+.. .|++++|...|+.+.+...... ...+-.+..+|...|++++|...|+.+.+..+.
T Consensus 145 ~Y~~A~~l~~~---~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 145 DYNAAIALVQD---KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 45555544333 6899999999999998732211 257778888999999999999999888654320
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
.+.....+-.+...+...|++++|..+|+...+.
T Consensus 213 -------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 -------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred -------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0122334445566777889999999999988775
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.79 E-value=0.094 Score=46.29 Aligned_cols=257 Identities=13% Similarity=-0.072 Sum_probs=137.5
Q ss_pred ccCChHHHHHHHHHHHHhccCCCc----hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCC
Q 040338 64 CVGNIKMALHLHGLVKKFYFVSDE----SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERD 139 (385)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (385)
+.|+.+..+.+|+..++.|.. |. .+|..|-++|.-.+++++|++.-.. ++ .-|..+=++..+
T Consensus 29 k~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h----Dl-------tlar~lgdklGE-- 94 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTH----DL-------TLARLLGDKLGE-- 94 (639)
T ss_pred hccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhh----hH-------HHHHHhcchhcc--
Confidence 389999999999999998853 43 3456666777777888888876321 00 000000011100
Q ss_pred cchHHHHHHHHHhCCCchHHHHHH----HHHHHCCC-CCCHhhHHHHHHHhcCccCc-------------cchhhHHHHH
Q 040338 140 LVSWNTMISILTRHGFGFETLCTF----IELWNHGF-GLSSMLYATAFSARASVYDL-------------EWGPHLHSRV 201 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~-~p~~~t~~~ll~~~~~~~~~-------------~~a~~~~~~~ 201 (385)
..+...|-+.+--.|.+++|+-+- +-..+.|- ......+..+-+.|...|.. +++...++..
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~A 174 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENA 174 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHH
Confidence 111122233333445555554322 11222221 11234444555555544431 1122222221
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc---------CChhhHHHHHHH
Q 040338 202 VHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR---------RNMISWMVLISA 272 (385)
Q Consensus 202 ~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~ 272 (385)
.+ .|-.=+..-.+.|+.. .--..|..|.+.|.-.|+++.|+..-+.=.. ..-..+..|..+
T Consensus 175 v~--------fy~eNL~l~~~lgDr~--aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~ 244 (639)
T KOG1130|consen 175 VK--------FYMENLELSEKLGDRL--AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNC 244 (639)
T ss_pred HH--------HHHHHHHHHHHhhhHH--hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchh
Confidence 11 1111111111111100 0112445555666677888888766543221 123567778888
Q ss_pred HHhcCCCCchHHHH------------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--------hhhHHHHHHH
Q 040338 273 FSQAGVLEKPRFFF------------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--------TCYFVCMVDL 326 (385)
Q Consensus 273 ~~~~g~~~~a~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~li~~ 326 (385)
++-.|+++.|.+.| +.-++..+|.-..++++|+..+.+-...-. ...+-+|..+
T Consensus 245 hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna 324 (639)
T KOG1130|consen 245 HIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNA 324 (639)
T ss_pred hhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88888888888888 344555666666778888887776443211 6677788999
Q ss_pred HHccCCHHHHHHHHHhCC
Q 040338 327 LGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~ 344 (385)
|...|..+.|+.+.+.-.
T Consensus 325 ~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 325 FNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 999999888888776543
No 216
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.62 E-value=0.6 Score=34.49 Aligned_cols=138 Identities=11% Similarity=-0.001 Sum_probs=80.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|.+++..++..+...+ .+..-||.+|--....-+-+...++++.+-+.--.+.-|++.....-+..+. .+..-.+
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n-~~se~vD 90 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN-KLSEYVD 90 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT----HHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-chHHHHH
Confidence 47777777777777664 3455566666555555555555555555533221111133333332222221 2334456
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCC
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 207 (385)
..+......|+-+.-.+++.++.+. -.|+......+..+|.+.|+..++.+++.+.-+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 7788889999999999999988753 4677777888999999999999999999999998863
No 217
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.57 E-value=0.19 Score=36.99 Aligned_cols=133 Identities=16% Similarity=0.100 Sum_probs=75.8
Q ss_pred CCChhHHHHHHHhccc-CChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHh--cccCChhhHHHHHHHHHhccc-hhhH
Q 040338 245 GGSTQKADLAFELMSR-RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGC--SHSGPVTKGKHYFTAMAKFTY-TCYF 320 (385)
Q Consensus 245 ~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~-~~~~ 320 (385)
.|.+++..++..+... .+..-||-+|--....-+-+-..+++ ..+...+ ...|++......+ ...+. ....
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~L--dsIGkiFDis~C~NlKrVi~C~---~~~n~~se~v 89 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETL--DSIGKIFDISKCGNLKRVIECY---AKRNKLSEYV 89 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHH--HHHGGGS-GGG-S-THHHHHHH---HHTT---HHH
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHH--HHHhhhcCchhhcchHHHHHHH---HHhcchHHHH
Confidence 4677777888877765 34444444443332222211111111 1111110 1223333322222 22233 6677
Q ss_pred HHHHHHHHccCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 321 VCMVDLLGLSGLLGEAKKLIDEMPS--KPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
..-+..+..+|+-+...+++.++.. ++++...-.+..||.+.|+..++.+++++..+.|++.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kE 153 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLKE 153 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHH
Confidence 7788899999999999999999863 4788888889999999999999999999999998764
No 218
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.56 E-value=0.66 Score=35.20 Aligned_cols=86 Identities=6% Similarity=-0.053 Sum_probs=48.9
Q ss_pred HHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
...++..+.+.+.......+++.+.+.+ ..+...+|.++..|++.+ ..+.++.++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-------------------~~~~~~~~~li~ly~~~~-~~~ll~~l~~---- 65 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-------------------SENPALQTKLIELYAKYD-PQKEIERLDN---- 65 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-------------------ccchhHHHHHHHHHHHHC-HHHHHHHHHh----
Confidence 3456666666667777777777665554 245556777777777653 3344444432
Q ss_pred CCCCCHhhHHHHHHHhcCccCccchhhHHHHH
Q 040338 170 GFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201 (385)
Q Consensus 170 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 201 (385)
.++......+++.|.+.+.++++.-++..+
T Consensus 66 --~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 66 --KSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred --ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 123333344666666666666665555544
No 219
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.51 E-value=0.77 Score=34.81 Aligned_cols=129 Identities=6% Similarity=-0.036 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
......+|..+.. .+.+.....+++.+...| ..+...++.++..|++.. .++..+.+..
T Consensus 7 ~~~~~~vv~~~~~---~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---------------- 65 (140)
T smart00299 7 PIDVSEVVELFEK---RNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---------------- 65 (140)
T ss_pred cCCHHHHHHHHHh---CCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh----------------
Confidence 3345677888766 789999999999999887 468889999999999864 3444555542
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCc-cCccchhhHHHHHHHhCCC
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV-YDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~ 207 (385)
..+......++..|.+.+.++++.-++.++... . ..+..+... ++.+.|.++...-
T Consensus 66 --------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~-----~----~Al~~~l~~~~d~~~a~~~~~~~------ 122 (140)
T smart00299 66 --------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNF-----K----DAIVTLIEHLGNYEKAIEYFVKQ------ 122 (140)
T ss_pred --------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCH-----H----HHHHHHHHcccCHHHHHHHHHhC------
Confidence 123334455777788888888888888776321 1 122222222 6777777766641
Q ss_pred CchHHHHHHHHHHH
Q 040338 208 LDVFVGSGLIDMYL 221 (385)
Q Consensus 208 ~~~~~~~~li~~~~ 221 (385)
.+...|..++..+.
T Consensus 123 ~~~~lw~~~~~~~l 136 (140)
T smart00299 123 NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHHH
Confidence 24556655555443
No 220
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=2.6 Score=40.58 Aligned_cols=101 Identities=13% Similarity=0.035 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhcCCCCchHHHH---------HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHH
Q 040338 265 SWMVLISAFSQAGVLEKPRFFF---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGE 335 (385)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 335 (385)
+.+--+.-+...|+..+|.++- .|-.-+.+++..++|++..++-+..+. +.-|.-++.+|.+.|+.++
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHhcccHHH
Confidence 4455566677888888888877 677778888888998877766555443 6667778899999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 040338 336 AKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374 (385)
Q Consensus 336 A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 374 (385)
|.+.+-+....+ -...+|.+.|++.+|.++.-+
T Consensus 763 A~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 763 AKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 999987766432 577888888888888776544
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.2 Score=42.45 Aligned_cols=111 Identities=14% Similarity=-0.002 Sum_probs=73.9
Q ss_pred CchhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHH
Q 040338 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGK 305 (385)
Q Consensus 229 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~ 305 (385)
+.|...|-.|...|...|+.+.|..-|..-.+ +|...+..+..++....+ ..+-.++.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-------------------~~~ta~a~ 213 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-------------------QQMTAKAR 213 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-------------------CcccHHHH
Confidence 45677777777777777777777777766654 355555555555433321 12345677
Q ss_pred HHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHHHHH
Q 040338 306 HYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALLGA 358 (385)
Q Consensus 306 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~ 358 (385)
.+|+++.+..+ .....-|...+...|++.+|...++.|.+. |....+..+|..
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 78888887777 666666777778888888888888888775 555566666543
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=1.1 Score=37.46 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=84.6
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|.+.-...++.+..+...+.++.....|.+.-.+.|+.+.|...|++..+... +.|..+++
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~------------------kL~~~q~~ 251 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ------------------KLDGLQGK 251 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh------------------hhhccchh
Confidence 688888999999999987777888888999999999999999999998765433 33444444
Q ss_pred HHH-----HHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 145 TMI-----SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 145 ~li-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
.++ ..|.-++++..|...|++....+- -|....|.-.-+..=.|+..+|++.++.|+..-+
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 333 345556677777877877765421 1333333322233335777888888888877643
No 223
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=95.09 E-value=0.9 Score=35.87 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=70.9
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH---HHHHHHHHhcccCChhhHHHHHHHHHhccc-----------
Q 040338 251 ADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF---FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----------- 316 (385)
Q Consensus 251 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 316 (385)
|+.+.++-+++....|....++-++.-+.+++-+.+ .-.+++-.|.+.-+|.++.++++.|.+...
T Consensus 95 a~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~ 174 (233)
T PF14669_consen 95 AEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGP 174 (233)
T ss_pred HHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCc
Confidence 344444445556788999999999888888887777 666778888889999999999999887444
Q ss_pred ------hhhHHHHHHHHHccCCHHHHHHHHHh
Q 040338 317 ------TCYFVCMVDLLGLSGLLGEAKKLIDE 342 (385)
Q Consensus 317 ------~~~~~~li~~~~~~g~~~~A~~~~~~ 342 (385)
-...|.-...+.++|.+|-|..++++
T Consensus 175 e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 175 EKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred cccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34556677788888999988888874
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.23 Score=42.13 Aligned_cols=119 Identities=11% Similarity=-0.006 Sum_probs=84.2
Q ss_pred ChhhHHHHHHHHHh--cCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccC---CHH
Q 040338 262 NMISWMVLISAFSQ--AGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSG---LLG 334 (385)
Q Consensus 262 ~~~~~~~li~~~~~--~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g---~~~ 334 (385)
+..+.+.++..+-. ..+++.+. .|..|..+|...|+.+.|..-|....+.-. +..+..+..++..+. ...
T Consensus 134 ~~~~~~~l~a~Le~~L~~nP~d~e---gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 134 AEQEMEALIARLETHLQQNPGDAE---GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred CcccHHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccH
Confidence 33444444444322 22333333 556677777777777777888888777665 677777777665433 466
Q ss_pred HHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 335 EAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 335 ~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
++..+|+++... .|+.+-.-|...+...|++.+|...|+.|.+..|.+.
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 899999999874 4667777888899999999999999999999888754
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.74 E-value=0.88 Score=42.49 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=94.7
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHH
Q 040338 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239 (385)
Q Consensus 160 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li 239 (385)
.-+|.-+... ++|. +..+++..+=.||-+.+++.+.+..+.+---.+.. .-++ -.|+.++
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la-~L~L---------------L~y~~~~ 236 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLA-ALVL---------------LWYHLVV 236 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHH-HHHH---------------HHHHHHH
Confidence 3445555443 3443 33455666667888888888887665332111111 1111 1334444
Q ss_pred HHHHc----CCChhHHHHHHHhccc--CChhhHHHHH-HHHHhcCCCCchHHHH----------------HHHHHHHHhc
Q 040338 240 TMYAE----GGSTQKADLAFELMSR--RNMISWMVLI-SAFSQAGVLEKPRFFF----------------FFVSLLSGCS 296 (385)
Q Consensus 240 ~~~~~----~g~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~a~~~~----------------~~~~l~~~~~ 296 (385)
..+.. ..+.+.|.++++.+.+ |+...|.-.- ..+...|++++|++.+ .+--+.-.+.
T Consensus 237 ~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 237 PSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred HHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 44433 4567889999999987 7766665443 3455677777777777 4444555556
Q ss_pred ccCChhhHHHHHHHHHhccc-hhhHHHH--HHHHHccCCH-------HHHHHHHHhCCC
Q 040338 297 HSGPVTKGKHYFTAMAKFTY-TCYFVCM--VDLLGLSGLL-------GEAKKLIDEMPS 345 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~-~~~~~~l--i~~~~~~g~~-------~~A~~~~~~m~~ 345 (385)
-.++|++|...|..+.+... ...+-.. ..++...|+. ++|.++|.+.+.
T Consensus 317 ~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 66777777777777776655 2222222 2233445655 666676666543
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.73 E-value=3.2 Score=37.66 Aligned_cols=238 Identities=13% Similarity=0.032 Sum_probs=125.3
Q ss_pred ccCCChHHHHHHHHHHHHcccch-hhHHh--------------hhhhHHHHHhhhC--CCChhhHHHHHHHHHhhhccCC
Q 040338 5 GSLKSLPIARKIHAQLISTCLIS-SIFLQ--------------LIDDDYRVFCDIG--PRYLFTYNTMINGGVRCLCVGN 67 (385)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--------------~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~ 67 (385)
.+.|++.+++.+|..+....-.. ..+.- +++.......... .| ...|-.+..++.. -+.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~-Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFG-KSAYLPLFKALVA-YKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHH-HHhhh
Confidence 36688899999999988764222 22221 4444444444333 22 3445556555543 23688
Q ss_pred hHHHHHHHHHHHHh--ccCC------------CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhc
Q 040338 68 IKMALHLHGLVKKF--YFVS------------DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQ 133 (385)
Q Consensus 68 ~~~a~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~ 133 (385)
+++|.+.+..-.+. +..| |...=+..++++.+.|++.++..++++|...-. .
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll--------------k 160 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL--------------K 160 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh--------------h
Confidence 88888888777665 3222 222335667888889999999999888753211 1
Q ss_pred CCCCCCcchHHHHHHHHHhC--------CCchHHHHHHH-------HHHHC------CCCCCHhhHHHHHHHhc--CccC
Q 040338 134 KMPERDLVSWNTMISILTRH--------GFGFETLCTFI-------ELWNH------GFGLSSMLYATAFSARA--SVYD 190 (385)
Q Consensus 134 ~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~-------~m~~~------g~~p~~~t~~~ll~~~~--~~~~ 190 (385)
+=..-+..+||.++-.+.++ ...+-+.+.|+ +|... .+.|-...+..++.-.. -...
T Consensus 161 rE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 161 RECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred hhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 11136777888744333332 12222222222 22211 13343333333333222 1122
Q ss_pred ccchhhHHHHHHHhCCCCchH-HHHHHHHHHHhcCCCC----------------CCchhhHHHHHHHHHHcCCChhHHHH
Q 040338 191 LEWGPHLHSRVVHMEPSLDVF-VGSGLIDMYLKCGCNG----------------IESSIQIGKALVTMYAEGGSTQKADL 253 (385)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~----------------~~~~~~~~~~li~~~~~~g~~~~A~~ 253 (385)
..--.++++.-.+.-+.|+.. +...|...+...+ .+ .+.-+.++..++....+.++...|.+
T Consensus 241 l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~-e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q 319 (549)
T PF07079_consen 241 LPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDP-EQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ 319 (549)
T ss_pred ccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcCh-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333344444444444555432 2233333333311 11 22335567777778888888888888
Q ss_pred HHHhcc
Q 040338 254 AFELMS 259 (385)
Q Consensus 254 ~~~~m~ 259 (385)
.+..++
T Consensus 320 ~l~lL~ 325 (549)
T PF07079_consen 320 YLALLK 325 (549)
T ss_pred HHHHHH
Confidence 777654
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.69 E-value=0.32 Score=44.75 Aligned_cols=156 Identities=14% Similarity=-0.047 Sum_probs=95.6
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCC--CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 040338 148 SILTRHGFGFETLCTFIELWNHGFGL--SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225 (385)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 225 (385)
....-.++++++.++.+.=. +.| +..-...+++.+.+.|..+.|+++-.+-..
T Consensus 269 k~av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~---------------------- 323 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH---------------------- 323 (443)
T ss_dssp HHHHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH----------------------
T ss_pred HHHHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH----------------------
Confidence 44456788888777664111 111 234467788888888888888876554322
Q ss_pred CCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH----HHHHHHHHhcccCCh
Q 040338 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----FFVSLLSGCSHSGPV 301 (385)
Q Consensus 226 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~ 301 (385)
=.....++|+++.|.++-++.. +...|..|.+...+.|+++-|.+.+ -|..++-.|.-.|+.
T Consensus 324 ------------rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 324 ------------RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR 389 (443)
T ss_dssp ------------HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H
T ss_pred ------------HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH
Confidence 1344557788888887766554 5568888888888888888888888 777788888888888
Q ss_pred hhHHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 302 TKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 302 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
+...++.+.....|. ++....++.-.|+.++..+++.+...
T Consensus 390 ~~L~kl~~~a~~~~~---~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 390 EKLSKLAKIAEERGD---INIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccC---HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 877777777666544 44444455556777777777665543
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.69 E-value=0.29 Score=44.29 Aligned_cols=66 Identities=11% Similarity=-0.089 Sum_probs=48.6
Q ss_pred CCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCc---chHHHHHHHHHhCCCchHHHH
Q 040338 85 SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDL---VSWNTMISILTRHGFGFETLC 161 (385)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~ 161 (385)
.+...++.+..+|.+.|++++|+..|++..+.++ .+. .+|..+..+|...|+.++|+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-------------------d~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-------------------NPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------CchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3556778888888888888888888877665542 222 357778888888888888888
Q ss_pred HHHHHHHC
Q 040338 162 TFIELWNH 169 (385)
Q Consensus 162 ~~~~m~~~ 169 (385)
.+++..+.
T Consensus 134 ~LrrALel 141 (453)
T PLN03098 134 CLRTALRD 141 (453)
T ss_pred HHHHHHHh
Confidence 88887764
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.67 E-value=0.055 Score=31.60 Aligned_cols=32 Identities=31% Similarity=0.270 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 351 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+|..+..+|...|++++|.++++++++..|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34556666666666666666666666666654
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.61 E-value=0.26 Score=45.35 Aligned_cols=130 Identities=12% Similarity=-0.024 Sum_probs=79.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCC-CccccccchHHHHHHhcCCCCCCcchH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP-SLFCWKFGIIRLLIMFQKMPERDLVSW 143 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (385)
+++++.+.+....-.--. ..+..-.+.++..+-+.|..+.|+++...-..+ +....-|+++.|.++.++.. +...|
T Consensus 274 ~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W 350 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELD--DPEKW 350 (443)
T ss_dssp TT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCS--THHHH
T ss_pred cCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcC--cHHHH
Confidence 688888766663111000 112455778888888888888888876443211 11122277888888887764 66689
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|.
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9999999999999999999988643 34555566667777777777766666553
No 231
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.44 E-value=1.5 Score=44.35 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=70.7
Q ss_pred CChhhHHHH----HHHHHhcCCCCchHHHH----HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHcc
Q 040338 261 RNMISWMVL----ISAFSQAGVLEKPRFFF----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLS 330 (385)
Q Consensus 261 ~~~~~~~~l----i~~~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~ 330 (385)
++...+... ..-+...+.+++|.-.| -....+.+|...|+|.+|..+..++..... ..+-..|+.-+..+
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence 455444444 44445567777777666 555667888888888888888887655444 44446688888888
Q ss_pred CCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 040338 331 GLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRN 374 (385)
Q Consensus 331 g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 374 (385)
++.-+|-++..+...+|. ..+.-|++...+++|.++...
T Consensus 1013 ~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSDPE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred ccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 988888888888776432 233444555555555555433
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.33 E-value=0.76 Score=42.90 Aligned_cols=153 Identities=12% Similarity=0.013 Sum_probs=99.2
Q ss_pred hhhhHHHHHhhhC-CCCh---------hhHHHHHHHHHhhh-ccCChHHHHHHHHHHHHhccCCCchHHHhHH-HHHHhc
Q 040338 33 LIDDDYRVFCDIG-PRYL---------FTYNTMINGGVRCL-CVGNIKMALHLHGLVKKFYFVSDESIAKSSI-DMHVKC 100 (385)
Q Consensus 33 ~~~~A~~~~~~~~-~~~~---------~~~~~li~~~~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~ 100 (385)
+-+.+.+.+..-. .++. ..|+.++..++... .....+.|.++++.+.++ -|+...|.-.- +.+...
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLK 280 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHh
Confidence 5555555555433 2222 35777776664421 256889999999999986 56776665544 566678
Q ss_pred CChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHH
Q 040338 101 GAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYAT 180 (385)
Q Consensus 101 g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 180 (385)
|++++|++.|++..... .++++.....+--+...+.-..+|++|.+.|..+.+.. .-...+|..
T Consensus 281 g~~~~Ai~~~~~a~~~q---------------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y 344 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQ---------------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAY 344 (468)
T ss_pred cCHHHHHHHHHHhccch---------------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHH
Confidence 99999999998765321 11222333445556667888899999999999998752 334556665
Q ss_pred HHHH-hcCccCc-------cchhhHHHHHHH
Q 040338 181 AFSA-RASVYDL-------EWGPHLHSRVVH 203 (385)
Q Consensus 181 ll~~-~~~~~~~-------~~a~~~~~~~~~ 203 (385)
+.-+ +...++. ++|.+++.+...
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5444 3456666 677777776543
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=2.3 Score=35.20 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=97.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 220 (385)
..|.-...+|-...++++|...+.+..+. .+-|...|.. .+.++.|.-+.+++.+. .--...|+.-...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555667888889999998888776531 2223222221 12334444444444332 11222333334444
Q ss_pred HhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc------CC--hhhHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040338 221 LKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR------RN--MISWMVLISAFSQAGVLEKPRFFFFFVSLL 292 (385)
Q Consensus 221 ~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~l~ 292 (385)
..+ |..+-|-..+++.-+ |+ +..|..-+...-..++...|.+++ ...-
T Consensus 102 ~E~----------------------GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~--gk~s 157 (308)
T KOG1585|consen 102 VEC----------------------GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY--GKCS 157 (308)
T ss_pred HHh----------------------CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH--HHhh
Confidence 444 444444333332211 11 123333333344444444443332 3333
Q ss_pred HHhcccCChhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHhCCC------CCCcchHHHHHHH
Q 040338 293 SGCSHSGPVTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDEMPS------KPTCVIWGALLGA 358 (385)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~li~~ 358 (385)
..+.+...+++|-..+.+-..... -..|-+.|-.+.-..++..|.+.++.--. .-+..+...|+.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 334444455554444333222111 23355556666777788888888877322 1356677788888
Q ss_pred HHhcCChHHHHHHH
Q 040338 359 CCSHYNTKLAELVM 372 (385)
Q Consensus 359 ~~~~g~~~~a~~~~ 372 (385)
|- .||.+++..++
T Consensus 238 yd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 YD-EGDIEEIKKVL 250 (308)
T ss_pred hc-cCCHHHHHHHH
Confidence 76 46666665544
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.24 E-value=3.3 Score=38.12 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=64.5
Q ss_pred HHHhcccCChhhHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCc--chHHHHHHHHHhcC
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTC--VIWGALLGACCSHY 363 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~--~~~~~li~~~~~~g 363 (385)
..++-+.|+.++|++.+.++.+..+ ..+...|+++|...+++.++..++.+-.+- |.. .+|+..+-.....+
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~ 345 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVG 345 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhc
Confidence 3444567888888888888877554 556677999999999999999999888652 443 35776554444444
Q ss_pred Ch---------------HHHHHHHHHHHhccccCC
Q 040338 364 NT---------------KLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 364 ~~---------------~~a~~~~~~~~~~~~~~~ 383 (385)
+. ..|.+.+.+..+.+|..+
T Consensus 346 d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 346 DKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred cccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 31 245677788778877654
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.20 E-value=2.9 Score=34.96 Aligned_cols=82 Identities=12% Similarity=-0.042 Sum_probs=61.7
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCC-CHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHG-FGL-SSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 218 (385)
..|+--+. -.+.|++++|.+.|+.+...- ..| ...+.-.++-++-+.++++.|+..+++..+..+.....-|-..|.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34554444 357899999999999998653 122 456666778889999999999999999999887766667766666
Q ss_pred HHHhc
Q 040338 219 MYLKC 223 (385)
Q Consensus 219 ~~~~~ 223 (385)
+++..
T Consensus 115 gLs~~ 119 (254)
T COG4105 115 GLSYF 119 (254)
T ss_pred HHHHh
Confidence 66543
No 236
>PRK15331 chaperone protein SicA; Provisional
Probab=94.18 E-value=0.26 Score=38.09 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHH
Q 040338 270 ISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGE 335 (385)
Q Consensus 270 i~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 335 (385)
.--+...|++++|..+| -+..|..+|...+++++|...|........ +..+-....+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445677777777776 344445555556667777776666554444 3333345666666777777
Q ss_pred HHHHHHhCCCCCC
Q 040338 336 AKKLIDEMPSKPT 348 (385)
Q Consensus 336 A~~~~~~m~~~p~ 348 (385)
|+.-|+...++|.
T Consensus 124 A~~~f~~a~~~~~ 136 (165)
T PRK15331 124 ARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHhCcc
Confidence 7776666655433
No 237
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.18 E-value=0.074 Score=29.47 Aligned_cols=28 Identities=14% Similarity=-0.071 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 040338 351 IWGALLGACCSHYNTKLAELVMRNLLQL 378 (385)
Q Consensus 351 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 378 (385)
+|..|.+.|.+.|++++|++++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888885543
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.18 E-value=0.32 Score=40.74 Aligned_cols=87 Identities=15% Similarity=0.026 Sum_probs=61.8
Q ss_pred ccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CC----cchHHHHHHHHHhcCChH
Q 040338 297 HSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PT----CVIWGALLGACCSHYNTK 366 (385)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~----~~~~~~li~~~~~~g~~~ 366 (385)
+.|++..|.+-|....+..+ +..+-=|.+++...|++++|..+|..+.+. |+ ..+.--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 45667788888888877777 444445788888888888888888777653 22 234555666777788888
Q ss_pred HHHHHHHHHHhccccCC
Q 040338 367 LAELVMRNLLQLDVKVF 383 (385)
Q Consensus 367 ~a~~~~~~~~~~~~~~~ 383 (385)
+|...|+++.+.-|..+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 88888888887776544
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=0.63 Score=38.80 Aligned_cols=129 Identities=10% Similarity=0.005 Sum_probs=79.6
Q ss_pred hHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 040338 92 SSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171 (385)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 171 (385)
.++..+--.|.+.-....+++..+.+. +.++..-..|.+.-.+.|+.+.|...|+...+..-
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~------------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~ 243 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYP------------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ 243 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCC------------------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 333444444555666666766666554 55677777788888888888888888887765444
Q ss_pred CCCHhhHHHHH-----HHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCC
Q 040338 172 GLSSMLYATAF-----SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGG 246 (385)
Q Consensus 172 ~p~~~t~~~ll-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g 246 (385)
+.|..+++.++ ..+.-++++..|...+.++...... +...-|+-.-+..-.|
T Consensus 244 kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-----------------------~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 244 KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-----------------------NAVANNNKALCLLYLG 300 (366)
T ss_pred hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-----------------------chhhhchHHHHHHHHH
Confidence 44444444433 3355566777777777777655432 1122232223333456
Q ss_pred ChhHHHHHHHhcccC
Q 040338 247 STQKADLAFELMSRR 261 (385)
Q Consensus 247 ~~~~A~~~~~~m~~~ 261 (385)
+..+|++.++.|.+.
T Consensus 301 ~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888999999999873
No 240
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.07 E-value=2.4 Score=33.57 Aligned_cols=103 Identities=10% Similarity=-0.018 Sum_probs=65.6
Q ss_pred CChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchH
Q 040338 47 RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126 (385)
Q Consensus 47 ~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 126 (385)
|++..--.|-.++.. .|+..+|...|++....-+.-|....-.+.++....++...|...++.+-+-++.
T Consensus 87 pTvqnr~rLa~al~e---lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa------- 156 (251)
T COG4700 87 PTVQNRYRLANALAE---LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA------- 156 (251)
T ss_pred hhHHHHHHHHHHHHH---hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-------
Confidence 333333345555444 6777888887777766545556666666777777777777777777766443320
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 127 RLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
-.++.+.-.+...+...|++.+|..-|+.....
T Consensus 157 ----------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 157 ----------FRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred ----------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 123334445566777778888888888777765
No 241
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.95 E-value=3.8 Score=35.39 Aligned_cols=176 Identities=13% Similarity=0.024 Sum_probs=95.5
Q ss_pred cCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhh
Q 040338 186 ASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMIS 265 (385)
Q Consensus 186 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 265 (385)
.+.|+.+.|..++.+........++.....|.+.+ |+.-...+.+..+++.|...+++-.+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~--------------yn~G~~l~~~~~~~~~a~~wL~~a~~----- 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC--------------YNIGKSLLSKKDKYEEAVKWLQRAYD----- 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH--------------HHHHHHHHHcCCChHHHHHHHHHHHH-----
Confidence 35667777777777766644233333333343333 22223333333377777666654432
Q ss_pred HHHHHHHHHhc-CCCCchHHHH--HHHHHHHHhcccCCh---hhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHH
Q 040338 266 WMVLISAFSQA-GVLEKPRFFF--FFVSLLSGCSHSGPV---TKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAK 337 (385)
Q Consensus 266 ~~~li~~~~~~-g~~~~a~~~~--~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~ 337 (385)
+++...+. ....+..++- ++..++.+|...+.. ++|..+++.+....+ +.++-.-++.+.+.++.+++.
T Consensus 65 ---~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 65 ---ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYE 141 (278)
T ss_pred ---HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHH
Confidence 00000111 1112221222 555555666555543 456666666655555 666666677777789999999
Q ss_pred HHHHhCCCCC--CcchHHHHHHHHHh--cCChHHHHHHHHHHHhccccCC
Q 040338 338 KLIDEMPSKP--TCVIWGALLGACCS--HYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 338 ~~~~~m~~~p--~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
+.+.+|.... ....+...++.+.. ......+...+++++-..+.|+
T Consensus 142 ~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 142 EILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 9999998763 34556666666522 2344567777777665555443
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.90 E-value=3 Score=42.36 Aligned_cols=76 Identities=9% Similarity=-0.078 Sum_probs=50.7
Q ss_pred HHHHHHHcCCChhHHHHHHHhcccCChhhH---HHHHHHHHhcCCCCchHHHH-----HHHHHHHHhcccCChhhHHHHH
Q 040338 237 ALVTMYAEGGSTQKADLAFELMSRRNMISW---MVLISAFSQAGVLEKPRFFF-----FFVSLLSGCSHSGPVTKGKHYF 308 (385)
Q Consensus 237 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g~~~~a~~~~-----~~~~l~~~~~~~~~~~~a~~~~ 308 (385)
--+.+|..+|+|.+|..+-..+..+-.... ..|+.-+...+++-+|-++. -..-.+..+++...+++|.++-
T Consensus 970 kAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 970 KALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHH
Confidence 446677778888888888887766433222 56777888888888887766 4445555566666667666655
Q ss_pred HHHH
Q 040338 309 TAMA 312 (385)
Q Consensus 309 ~~~~ 312 (385)
....
T Consensus 1050 ~~~~ 1053 (1265)
T KOG1920|consen 1050 SKAK 1053 (1265)
T ss_pred Hhcc
Confidence 5444
No 243
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.83 E-value=0.022 Score=43.60 Aligned_cols=54 Identities=11% Similarity=-0.098 Sum_probs=34.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHH
Q 040338 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHS 199 (385)
Q Consensus 146 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 199 (385)
++..+.+.+.++....+++.+...+..-+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 455666677777777777777766555566667777777777766565555554
No 244
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.76 E-value=2.9 Score=33.39 Aligned_cols=91 Identities=9% Similarity=-0.030 Sum_probs=65.0
Q ss_pred HHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCh
Q 040338 292 LSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALLGACCSHYNT 365 (385)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~ 365 (385)
...+...+++++|...++....... ...-.-|.......|.+|+|.+.++...+. -.......-...+...|+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 3455667778888888877664444 223334666778899999999999988764 1222233445679999999
Q ss_pred HHHHHHHHHHHhccccC
Q 040338 366 KLAELVMRNLLQLDVKV 382 (385)
Q Consensus 366 ~~a~~~~~~~~~~~~~~ 382 (385)
++|+.-|++.++.+..|
T Consensus 176 ~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 176 QEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHccCCh
Confidence 99999999998887544
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.71 E-value=1.6 Score=33.71 Aligned_cols=69 Identities=19% Similarity=0.125 Sum_probs=41.3
Q ss_pred HHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHh
Q 040338 293 SGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALLGACCS 361 (385)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~ 361 (385)
..-...++.+.+..++..+.-.-+ ...-..-...+.+.|++++|..+|+++.+. |....-..|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 333455677777777777776666 333333344456788888888888887765 333333344444433
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.61 E-value=1.5 Score=36.91 Aligned_cols=99 Identities=15% Similarity=0.003 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccC--CCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFV--SDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 51 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
.|+.-+..+.. |++..|.+.|...++.... -....+-.|..++...|+.++|..+|..+.+..+.+
T Consensus 144 ~Y~~A~~~~ks----gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s-------- 211 (262)
T COG1729 144 LYNAALDLYKS----GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS-------- 211 (262)
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC--------
Confidence 37766665433 7777777777777775321 123455566777777777777777777665533200
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 129 LIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
+.-+...--|..+..+.|+.++|..+|++..+.
T Consensus 212 --------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 212 --------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred --------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 122334445556666777777777777777654
No 247
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.55 E-value=0.06 Score=41.14 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=36.6
Q ss_pred HHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 040338 180 TAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225 (385)
Q Consensus 180 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 225 (385)
.++..+.+.+.......+++.+...+...+....+.++..|++.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~ 57 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDP 57 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCC
Confidence 3677888889999999999999988877778888888888887764
No 248
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.49 E-value=4.5 Score=39.35 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=51.2
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHH-HHHHccCC-----------HHHHHHHHHhCCCCC------
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMV-DLLGLSGL-----------LGEAKKLIDEMPSKP------ 347 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li-~~~~~~g~-----------~~~A~~~~~~m~~~p------ 347 (385)
.......-+...|++++|..+|....+... ....+.++ .+...... ...|.++.+.....+
T Consensus 416 i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~ 495 (613)
T PF04097_consen 416 IIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKV 495 (613)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhc
Confidence 444555556678888888888888776655 44444333 33333333 455666666665532
Q ss_pred ---CcchHHHHHHH-----HHhcCChHHHHHHHHHH
Q 040338 348 ---TCVIWGALLGA-----CCSHYNTKLAELVMRNL 375 (385)
Q Consensus 348 ---~~~~~~~li~~-----~~~~g~~~~a~~~~~~~ 375 (385)
+..|+..|+.. +...|+++.|++.++++
T Consensus 496 ~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 496 SRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 23355555433 46688999998777764
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.46 E-value=0.73 Score=39.27 Aligned_cols=78 Identities=13% Similarity=0.142 Sum_probs=57.3
Q ss_pred hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
.++..++..+..+|+.+.+.+.+++....+ +-+...|..+|.+|.+.|+...|+..|+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-------------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-------------------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 345556777777788888888877776655 4677888888888888888888888888876
Q ss_pred H-----CCCCCCHhhHHHHHHH
Q 040338 168 N-----HGFGLSSMLYATAFSA 184 (385)
Q Consensus 168 ~-----~g~~p~~~t~~~ll~~ 184 (385)
+ .|+.|...+.......
T Consensus 215 ~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 215 KTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHhhhhcCCCccHHHHHHHHHH
Confidence 5 4777766665555444
No 250
>PRK15331 chaperone protein SicA; Provisional
Probab=93.36 E-value=1.3 Score=34.37 Aligned_cols=84 Identities=7% Similarity=-0.089 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
.|++++|..+|.-+.-.++. +..-+..|..++-..+++++|...|......+ ..|..++-
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-------------------~~dp~p~f 109 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-------------------KNDYRPVF 109 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------------------cCCCCccc
Confidence 47777777777777665433 44445555555556677777777775543222 23334444
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHH
Q 040338 145 TMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
-.-.++...|+.+.|...|+...+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 456667777777777777776665
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.14 E-value=0.15 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.007 Sum_probs=26.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 350 VIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 350 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
.+|..+..+|...|++++|+..+++.++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888999999999999999999888875
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.61 Score=41.36 Aligned_cols=91 Identities=9% Similarity=-0.072 Sum_probs=50.8
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHHHHHH-Hhc
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALLGAC-CSH 362 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~-~~~ 362 (385)
++.++.-+|.+.+++..|++.-+.....++ ....---..+|...|+++.|+..|+.+.+. |+-..-..=+..| .+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 666666666667777777666666666555 444444566666667777777777666653 5444333322222 222
Q ss_pred CC-hHHHHHHHHHHHh
Q 040338 363 YN-TKLAELVMRNLLQ 377 (385)
Q Consensus 363 g~-~~~a~~~~~~~~~ 377 (385)
.. .+...++|..|..
T Consensus 339 ~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 22 2334556666654
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.01 E-value=7.9 Score=38.03 Aligned_cols=175 Identities=9% Similarity=-0.055 Sum_probs=94.0
Q ss_pred HHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH----HHHHHHHhCCCchHHHHHHH
Q 040338 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN----TMISILTRHGFGFETLCTFI 164 (385)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~ 164 (385)
....-|+.+.+...++-|..+-+.-. .|..+-. ...+.+.+.|++++|...|-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----------------------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI 392 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----------------------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYI 392 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----------------------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34556777777777777777764421 2222222 23345567899999998887
Q ss_pred HHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHc
Q 040338 165 ELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAE 244 (385)
Q Consensus 165 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~ 244 (385)
+-... +.|. .++.-|........-...++.+.+.|+.-. ..- ..|+.+|.+
T Consensus 393 ~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~-dht----------------------tlLLncYiK 443 (933)
T KOG2114|consen 393 ETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLANS-DHT----------------------TLLLNCYIK 443 (933)
T ss_pred HHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccccc-hhH----------------------HHHHHHHHH
Confidence 76543 4443 355566666666666777788888877432 222 344555555
Q ss_pred CCChhHHHHHHHhcccCChhh--HHHHHHHHHhcCCCCchHHHH-----HHHHHHHHhcccCChhhHHHHHHHHHhccc
Q 040338 245 GGSTQKADLAFELMSRRNMIS--WMVLISAFSQAGVLEKPRFFF-----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY 316 (385)
Q Consensus 245 ~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~a~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (385)
.++.++-.++.+...+ .... ....+..+.+.+-.++|.-+- .-..+--.+-..+++++|.+.++.+.-...
T Consensus 444 lkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~ 521 (933)
T KOG2114|consen 444 LKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISEL 521 (933)
T ss_pred hcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHH
Confidence 5555555555544431 1111 222334444444444443332 111222223456677777777766544433
No 254
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.95 E-value=4.8 Score=34.38 Aligned_cols=115 Identities=7% Similarity=0.046 Sum_probs=78.0
Q ss_pred hhhhHHHHHhhhC-----CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh-ccCCCchHHHhHHHHHHhcCChhHH
Q 040338 33 LIDDDYRVFCDIG-----PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF-YFVSDESIAKSSIDMHVKCGAVDYA 106 (385)
Q Consensus 33 ~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a 106 (385)
-+.+|.++|+... -.|...-..+++....-. ........++.+.+... |-.++..+-..+|..+++.+++.+-
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~-~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDE-NTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcc-ccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 6677888887432 234444455555544311 22555555666666543 4567888888999999999999999
Q ss_pred HHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 040338 107 ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 107 ~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 165 (385)
.++++.-..... +..|...|..+|......|+..-..++.++
T Consensus 222 ~~fW~~~~~~~~-----------------~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSV-----------------PGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCC-----------------CCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999987655421 157888999999999999998665555544
No 255
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=7 Score=35.12 Aligned_cols=162 Identities=9% Similarity=-0.071 Sum_probs=101.1
Q ss_pred cchHHHHH-HHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHh--cCccCccchhhHHHHHHHhCCCCchH-HHHH
Q 040338 140 LVSWNTMI-SILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSAR--ASVYDLEWGPHLHSRVVHMEPSLDVF-VGSG 215 (385)
Q Consensus 140 ~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 215 (385)
..+|..|= .++...|++++|...-...++.. + ...+...+++. .-..+.+.+...|++.++.++..... +-..
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM 244 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh
Confidence 34444332 45667788888887666655431 1 22334444443 34567778888888877765432111 1111
Q ss_pred HHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-------CChhhHHHHHHHHHhcCCCCchHHHH--
Q 040338 216 LIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-------RNMISWMVLISAFSQAGVLEKPRFFF-- 286 (385)
Q Consensus 216 li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~a~~~~-- 286 (385)
..+.+ ..+..=.+...+.|++..|.+.|.+-.. ++...|.....+..+.|++.+|+.--
T Consensus 245 ~~k~l------------e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 245 MPKKL------------EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hHHHH------------HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 11111 2233344667789999999999998875 34556777778888999999988666
Q ss_pred ----------HHHHHHHHhcccCChhhHHHHHHHHHhccc
Q 040338 287 ----------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY 316 (385)
Q Consensus 287 ----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (385)
.|..-..++...++|++|.+-++...+...
T Consensus 313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455555566667888888888887766544
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.79 E-value=0.23 Score=26.72 Aligned_cols=32 Identities=25% Similarity=0.110 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 351 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
.|..+...|...|++++|++.+++.++..|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 46677888889999999999999988887753
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.42 E-value=0.91 Score=34.25 Aligned_cols=87 Identities=13% Similarity=-0.019 Sum_probs=59.3
Q ss_pred cccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCc--chHHHHHHHHHhcC--C-
Q 040338 296 SHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTC--VIWGALLGACCSHY--N- 364 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~--~~~~~li~~~~~~g--~- 364 (385)
.+.|++++|.+.|+.+....+ ....-.++.+|.+.+++++|...+++..+- |+. +-|-..+.++..-. .
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 467888888888888888777 556667888888899999988888888762 321 23444444433222 1
Q ss_pred --------------hHHHHHHHHHHHhccccC
Q 040338 365 --------------TKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 365 --------------~~~a~~~~~~~~~~~~~~ 382 (385)
...|..-|+++++.-|+.
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 567777777777766653
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.39 E-value=1.2 Score=32.89 Aligned_cols=77 Identities=18% Similarity=0.015 Sum_probs=58.1
Q ss_pred HHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH----------------HHHHHHHHhcccCC
Q 040338 240 TMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF----------------FFVSLLSGCSHSGP 300 (385)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~----------------~~~~l~~~~~~~~~ 300 (385)
-+.+..|+++.|++.|..... .....||.=..++.-+|+.++|++-+ +|..-...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 466788999999999987765 46788888888888888888887666 55555555666677
Q ss_pred hhhHHHHHHHHHhccc
Q 040338 301 VTKGKHYFTAMAKFTY 316 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~ 316 (385)
-+.|..=|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 7777777777666665
No 259
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.33 E-value=7.9 Score=34.57 Aligned_cols=109 Identities=17% Similarity=0.017 Sum_probs=73.4
Q ss_pred CCChHHHHHHHHHHH---HcccchhhHHh---------hhhhHHHHHhhhCCCChhhHHHHHHHHH-hhhccCChHHHHH
Q 040338 7 LKSLPIARKIHAQLI---STCLISSIFLQ---------LIDDDYRVFCDIGPRYLFTYNTMINGGV-RCLCVGNIKMALH 73 (385)
Q Consensus 7 ~~~~~~a~~~~~~~~---~~~~~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~~~~a~~ 73 (385)
.||-..|+..-.+.. +..-.|-+.+- +.++|++-|+.|.. |+-+--.-++++- ...+.|..+-|.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 577777776655543 33333333333 99999999999983 2222222333322 2344799999998
Q ss_pred HHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCC
Q 040338 74 LHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117 (385)
Q Consensus 74 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (385)
.-+..-+.- +--...+...+...|..|+++.|+++++.-....
T Consensus 176 yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 176 YAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 888776643 2245788999999999999999999998765433
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.33 E-value=6.8 Score=33.81 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=88.3
Q ss_pred ccccCCChHHHHHHHHHHHHcc--cchhhHHh---------------h---------hhhHHHHHhh---hC--CCCh--
Q 040338 3 ACGSLKSLPIARKIHAQLISTC--LISSIFLQ---------------L---------IDDDYRVFCD---IG--PRYL-- 49 (385)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~---------------~---------~~~A~~~~~~---~~--~~~~-- 49 (385)
...+.||++.|+..++++.... ..|+.... + ++.|..+++. +. .|+.
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 3457789999998888887654 23333222 2 3344444433 21 2332
Q ss_pred ---hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchH
Q 040338 50 ---FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126 (385)
Q Consensus 50 ---~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 126 (385)
.+...++.++.........++|..+++.+.... +-.+.++-.-+..+.+.++.+++.+++.+|...-
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--------- 151 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--------- 151 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---------
Confidence 345566666655444455666777777775542 2235566566777777888888988888886532
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHH---HhCCCchHHHHHHHHHHHCCCCCCH
Q 040338 127 RLLIMFQKMPERDLVSWNTMISIL---TRHGFGFETLCTFIELWNHGFGLSS 175 (385)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~ 175 (385)
.-....+...+..+ ... ....|...++.+....+.|..
T Consensus 152 ----------~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 152 ----------DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred ----------ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 11234455555544 333 345677777777665555544
No 261
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=4.4 Score=40.46 Aligned_cols=129 Identities=8% Similarity=-0.011 Sum_probs=87.9
Q ss_pred HHHhHHHHHHhcCChhHHHHHHHhccCCCc---cccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 040338 89 IAKSSIDMHVKCGAVDYAESAFLRMLNPSL---FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 165 (385)
-|..|+..|...|+.++|+++|.+..+... ......++...+++.+...++....-... -+.-..+++...++|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~-~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYA-DWVLNKNPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHh-hhhhccCchhheeeeec
Confidence 478999999999999999999999876431 22225566677777777666542211111 12235567777777766
Q ss_pred H---HHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 166 L---WNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 166 m---~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
- ....+.|+. +-.+......+-++..++.+....-.++....+.++..|++.-
T Consensus 585 ~~~~~~~sis~~~------Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v 640 (877)
T KOG2063|consen 585 EDKQEAESISRDD------VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKV 640 (877)
T ss_pred cChhhhccCCHHH------HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHH
Confidence 1 112233322 2345667788889999999998888889999999999988754
No 262
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=13 Score=36.28 Aligned_cols=146 Identities=15% Similarity=-0.039 Sum_probs=79.4
Q ss_pred HHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCC-CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 040338 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPE-RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFG 172 (385)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 172 (385)
|+.+.+.+.+++|+..-+.....-. . .-...+...|..+.-.|++++|-...-.|...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~------------------~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn--- 421 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEE------------------RFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN--- 421 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcc------------------ccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---
Confidence 6777888888888887655432110 0 02345777888888888888888877777543
Q ss_pred CCHhhHHHHHHHhcCccCccch------------hhHHHHHHHhCCCCchHHHHHHHHHHHh--------cC----CCC-
Q 040338 173 LSSMLYATAFSARASVYDLEWG------------PHLHSRVVHMEPSLDVFVGSGLIDMYLK--------CG----CNG- 227 (385)
Q Consensus 173 p~~~t~~~ll~~~~~~~~~~~a------------~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~g----~~~- 227 (385)
+..-|...+..+...++.... -.+++.++-..+.++...|..+++-+-. .. ++.
T Consensus 422 -~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q 500 (846)
T KOG2066|consen 422 -NAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ 500 (846)
T ss_pred -hHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh
Confidence 344444444444444433221 1222222222222222222222221100 00 000
Q ss_pred CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccC
Q 040338 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRR 261 (385)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 261 (385)
...+...-..|...|...+++.+|..++-..+++
T Consensus 501 ~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 501 NSESTALLEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred hccchhHHHHHHHHHHHccChHHHHHHHHhccCh
Confidence 2223334445888899999999999999888764
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.63 E-value=0.37 Score=27.99 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=25.9
Q ss_pred hHHHhHHHHHHhcCChhHHHHHHHhccCCC
Q 040338 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117 (385)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (385)
.++..+..+|.+.|++++|.++|++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467788899999999999999999987765
No 264
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.60 E-value=2.5 Score=36.72 Aligned_cols=108 Identities=6% Similarity=0.025 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHcccchhhHHh-----------------hhhhHHHHHhhhC-------CCChhhHHHHHHHHHhhhcc
Q 040338 10 LPIARKIHAQLISTCLISSIFLQ-----------------LIDDDYRVFCDIG-------PRYLFTYNTMINGGVRCLCV 65 (385)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~-----------------~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~ 65 (385)
++....+++.+.+.|+..+.+++ ....|..+|+.|+ .++-.++..|+..-.. .-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~-~~e 156 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSE-DVE 156 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccc-cHH
Confidence 45566788888888888877766 5677888888887 2344556666554110 001
Q ss_pred CChHHHHHHHHHHHHhccCCCch--HHHhHHHHHHhcCC--hhHHHHHHHhccCCCc
Q 040338 66 GNIKMALHLHGLVKKFYFVSDES--IAKSSIDMHVKCGA--VDYAESAFLRMLNPSL 118 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~ 118 (385)
.-.+.+..+++.+.+.|+..+-. ....++...-.... +..+.++++.+.+.++
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 22466778888888888765443 33334433322222 4477788888888776
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.32 E-value=1.4 Score=37.56 Aligned_cols=59 Identities=7% Similarity=0.072 Sum_probs=36.5
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
++..+++.+...|+.+.+...+++.....+ ...|..++.+|.+.|+...|+..|+.+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 555666666666666666666666665555 56666666666666666666666665543
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.26 E-value=0.49 Score=26.07 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888754
No 267
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=1.3 Score=39.32 Aligned_cols=108 Identities=12% Similarity=0.030 Sum_probs=66.1
Q ss_pred HHHHHcCCChhHHHHHHHhccc------------------CChhhHHHHHHHHHhcCCCCchHHHH------------HH
Q 040338 239 VTMYAEGGSTQKADLAFELMSR------------------RNMISWMVLISAFSQAGVLEKPRFFF------------FF 288 (385)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~------------------~~~~~~~~li~~~~~~g~~~~a~~~~------------~~ 288 (385)
.+.|.+.|++..|..-|++..+ .-..++..|..+|.+.+++.+|++.. ..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 4677788888888888776542 02245666666777777777776655 44
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHH-HHHHHHhCCCC
Q 040338 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGE-AKKLIDEMPSK 346 (385)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 346 (385)
-.-..+|...|+++.|+..|.++.+..+ ..+-+.++..--+..+..+ ..++|..|..+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666677777777777777777666 3333334444333333333 35666666554
No 268
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.88 E-value=4.8 Score=33.23 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=88.2
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHh
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLR 112 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (385)
++.-|-..++++.+| ..+-.++++ +.+..+..--.++.+-.+..+++-+.....+++. ...|+...|+..++.
T Consensus 145 RFalaCN~s~KIiEP-IQSRCAiLR----ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiif--ta~GDMRQalNnLQs 217 (333)
T KOG0991|consen 145 RFALACNQSEKIIEP-IQSRCAILR----YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIF--TAQGDMRQALNNLQS 217 (333)
T ss_pred hhhhhhcchhhhhhh-HHhhhHhhh----hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhh--hccchHHHHHHHHHH
Confidence 455555555555544 222233333 3335666666677777777777777777666653 357899888888765
Q ss_pred ccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhc
Q 040338 113 MLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARA 186 (385)
Q Consensus 113 m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 186 (385)
-...-. +-.+..+|+-+..|.+.....++..|. .+++++|.+++.++.+.|..|... .+.+++.+-
T Consensus 218 t~~g~g------~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 218 TVNGFG------LVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred Hhcccc------ccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 433211 112344566666788888888887765 567999999999999999998432 344555443
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.81 E-value=1.6 Score=38.23 Aligned_cols=124 Identities=20% Similarity=0.088 Sum_probs=59.3
Q ss_pred HHHHHHHcCCChhHHHHHHHhccc-------C--ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHH
Q 040338 237 ALVTMYAEGGSTQKADLAFELMSR-------R--NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHY 307 (385)
Q Consensus 237 ~li~~~~~~g~~~~A~~~~~~m~~-------~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~ 307 (385)
+|.+++.-.+.++++++.|+...+ | ....|-.|-..|.+..++++|.-+. .+|..+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~---------------~kA~~l 191 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFP---------------CKAAEL 191 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhh---------------HhHHHH
Confidence 355555556667777777665543 1 2245555555666666665554332 111111
Q ss_pred HHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCC----CCC----cchHHHHHHHHHhcCChHHHHHHHHH
Q 040338 308 FTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPS----KPT----CVIWGALLGACCSHYNTKLAELVMRN 374 (385)
Q Consensus 308 ~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~----~~~~~~li~~~~~~g~~~~a~~~~~~ 374 (385)
.+...-.+. ....-.|-.+|...|++.+|.+.-++..+ .-| ......+...|...|+.+.|+.-|+.
T Consensus 192 v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 192 VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 111111111 12222344455556665555555544432 122 23334455666666776666666655
Q ss_pred H
Q 040338 375 L 375 (385)
Q Consensus 375 ~ 375 (385)
.
T Consensus 272 A 272 (518)
T KOG1941|consen 272 A 272 (518)
T ss_pred H
Confidence 3
No 270
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.02 E-value=0.66 Score=24.90 Aligned_cols=31 Identities=13% Similarity=-0.061 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 351 IWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 351 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
+|..+...|...|++++|...|++..+..++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677788888899999999999988887763
No 271
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=14 Score=33.23 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=27.9
Q ss_pred cCChHHHHHHHHHHHHh---ccCCCchHHHhHHHHHHhcCChhHHHHHHHhcc
Q 040338 65 VGNIKMALHLHGLVKKF---YFVSDESIAKSSIDMHVKCGAVDYAESAFLRML 114 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (385)
.|++..|.+.+.+.+.. +..|+.-.|-....+..+.|+.++|+.-.+...
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 56666666666666543 223344445555555555666666666555443
No 272
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.78 E-value=7.1 Score=29.73 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=52.9
Q ss_pred cccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcc-----------------hHHHHH
Q 040338 296 SHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCV-----------------IWGALL 356 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-----------------~~~~li 356 (385)
...++.+++..+++.|.-.-+ ...-..-.-.+...|++++|.++|++..+.+... .|....
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A 100 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHA 100 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHH
Confidence 347788888888888877666 3333333445678899999999999988763222 333333
Q ss_pred HHHHhcCChHHHHHHHHHHHhcc
Q 040338 357 GACCSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 357 ~~~~~~g~~~~a~~~~~~~~~~~ 379 (385)
......+...++..+.+.+...-
T Consensus 101 ~~~le~~~~~~a~~Lv~al~g~~ 123 (153)
T TIGR02561 101 DEVLARDADADAVALVRALLGAQ 123 (153)
T ss_pred HHHHHhCCCHhHHHHHHHHhccc
Confidence 33444455566666666665433
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.76 E-value=1.4 Score=32.49 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=24.3
Q ss_pred cccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 296 SHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
...|+++.|++.|......-+ ...||.-..++.-+|+.++|+.=+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 334444444555554444443 44555555555555555555554444443
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.72 E-value=22 Score=35.12 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=59.6
Q ss_pred hhhhHHHHHhh-hCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHH
Q 040338 33 LIDDDYRVFCD-IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFL 111 (385)
Q Consensus 33 ~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 111 (385)
++++|..-+-+ ++.-++ ..+|.-|.. ..++..-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+
T Consensus 383 df~~A~~qYI~tI~~le~---s~Vi~kfLd---aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 383 DFDEATDQYIETIGFLEP---SEVIKKFLD---AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred CHHHHHHHHHHHcccCCh---HHHHHHhcC---HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 77777665543 332222 346666555 67888888888899888876 55666788999999988888777766
Q ss_pred hccCCCccccccchHHHHHHhcC
Q 040338 112 RMLNPSLFCWKFGIIRLLIMFQK 134 (385)
Q Consensus 112 ~m~~~~~~~~~~~~~~a~~~~~~ 134 (385)
.-. .|. |--+++.|++++.+
T Consensus 456 ~~~-~g~--~~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 456 KCD-KGE--WFFDVETALEILRK 475 (933)
T ss_pred cCC-Ccc--eeeeHHHHHHHHHH
Confidence 554 222 33344455544443
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.68 E-value=5.5 Score=30.13 Aligned_cols=66 Identities=17% Similarity=0.040 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhcc--CCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYF--VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL 118 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 118 (385)
...|+.-...+. .|++++|.+.|+.+..+-. +-.....-.|+.+|-+.+++++|...+++..+.++
T Consensus 11 ~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 11 QELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 345555555543 4999999999999987621 12334556688888999999999999888776554
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.61 E-value=5.6 Score=36.68 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=42.7
Q ss_pred cCChHHHHHHHHHHHHhccC-CCchHHHhHHHHHHhcCChhHHHHHHHhccC
Q 040338 65 VGNIKMALHLHGLVKKFYFV-SDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 115 (385)
.|+.++|.+.+.+|.+.... .+..+...|+.++...+...++..++.+..+
T Consensus 272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 79999999999999876322 2445788899999999999999999988654
No 277
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.52 E-value=1.1 Score=38.35 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=73.0
Q ss_pred hccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHH
Q 040338 81 FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETL 160 (385)
Q Consensus 81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 160 (385)
.|.+.+..+...++..-....+++++...+-++...--. .. .|+... .+.+..+.+ -++++++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a-------------~~--~~~~~~-~~~irlllk-y~pq~~i 120 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNA-------------WY--LRNWTI-HTWIRLLLK-YDPQKAI 120 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcch-------------hh--hccccH-HHHHHHHHc-cChHHHH
Confidence 455556666677777766677888888777665432110 00 122221 223333333 3577888
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 161 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
.++..=...|+-||.++++.+++.+.+.+++.+|.++.-.|....
T Consensus 121 ~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 121 YTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999988888887777664
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.51 E-value=12 Score=31.50 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHhcccC--Ch----hhHHHHHHHHHhcCCCCchH
Q 040338 236 KALVTMYAEGGSTQKADLAFELMSRR--NM----ISWMVLISAFSQAGVLEKPR 283 (385)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~----~~~~~li~~~~~~g~~~~a~ 283 (385)
..+.+-|.+.|.+..|..-+++|.+. +. ...-.|.++|...|-.++|.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH
Confidence 35667788888888888888888762 21 33444555666666555553
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.36 E-value=5 Score=31.88 Aligned_cols=64 Identities=6% Similarity=-0.043 Sum_probs=53.7
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH--hhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS--MLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
..+..+...|++.|+.++|++.|.++.+....|.. ..+-.+|+...-.+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999988666643 45677888889999999998888877664
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.27 E-value=8.3 Score=30.27 Aligned_cols=110 Identities=14% Similarity=-0.072 Sum_probs=52.2
Q ss_pred cCCChHHHHHHHHHHHHcccchhhHHh------------hhhhHHHHHhhhCC----CChhhHHHHHHHHHhhhccCChH
Q 040338 6 SLKSLPIARKIHAQLISTCLISSIFLQ------------LIDDDYRVFCDIGP----RYLFTYNTMINGGVRCLCVGNIK 69 (385)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~~~ 69 (385)
+.|..++|..-|..+-+.|-.....+. +.+.|...|+++.. |-..-=.+=+++--.....|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 345555666666666666544443333 56666666665541 11110011111111122355555
Q ss_pred HHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccC
Q 040338 70 MALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115 (385)
Q Consensus 70 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 115 (385)
......+-+...|-+.-...-..|--+-.+.|++.+|.+.|.++..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555444433333333334444445556666666666666543
No 281
>PRK11906 transcriptional regulator; Provisional
Probab=88.04 E-value=15 Score=33.72 Aligned_cols=84 Identities=14% Similarity=-0.083 Sum_probs=49.6
Q ss_pred hhhhHHHHHhhhC---CCC---hhh-----HHHHHHHHHhhh-ccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhc
Q 040338 33 LIDDDYRVFCDIG---PRY---LFT-----YNTMINGGVRCL-CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKC 100 (385)
Q Consensus 33 ~~~~A~~~~~~~~---~~~---~~~-----~~~li~~~~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 100 (385)
+.+.|..+|++.. .-| ... |+.+...+.... ......+|.++-+...+.+ +.|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 6777777777655 333 222 222222211111 1345566777777777665 34667767777777777
Q ss_pred CChhHHHHHHHhccCCC
Q 040338 101 GAVDYAESAFLRMLNPS 117 (385)
Q Consensus 101 g~~~~a~~~~~~m~~~~ 117 (385)
++.+.|...|++....+
T Consensus 352 ~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS 368 (458)
T ss_pred cchhhHHHHHHHHhhcC
Confidence 77888888888876554
No 282
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.57 E-value=1.2 Score=25.15 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=21.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 350 VIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 350 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888888764
No 283
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.47 E-value=11 Score=28.71 Aligned_cols=102 Identities=10% Similarity=0.021 Sum_probs=73.6
Q ss_pred HHHhccCCCc--hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCC-CCCCcchHHHHHHHHHhCC
Q 040338 78 VKKFYFVSDE--SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKM-PERDLVSWNTMISILTRHG 154 (385)
Q Consensus 78 m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~li~~~~~~~ 154 (385)
|.+.+..++. ...|.++.-.+..+++....++++.+..-.. +.. ...+...|++++.+..+..
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~--------------~~~~~~~~~ssf~~if~SlsnSs 93 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNT--------------DNIIGWLDNSSFHIIFKSLSNSS 93 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhH--------------HHHhhhcccchHHHHHHHHccCh
Confidence 3444444444 3467888888888999999998888743222 001 1356778999999997776
Q ss_pred C-chHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccc
Q 040338 155 F-GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193 (385)
Q Consensus 155 ~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 193 (385)
- ---+..+|.-|++.+.+++..-|..++.++.+....+.
T Consensus 94 SaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 94 SAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 6 34577899999988899999999999999887644443
No 284
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.40 E-value=2.8 Score=29.11 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 156 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
.-++.+-++.+....+.|+.....+.+++|.+.+|+..|.++++-++...- .+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHH
Confidence 335667777777788999999999999999999999999999998874421 1333554443
No 285
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=18 Score=31.06 Aligned_cols=129 Identities=12% Similarity=0.004 Sum_probs=79.6
Q ss_pred HHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH-------------HHHHHHHHhcccCChhhH
Q 040338 241 MYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF-------------FFVSLLSGCSHSGPVTKG 304 (385)
Q Consensus 241 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~-------------~~~~l~~~~~~~~~~~~a 304 (385)
.....|++.+|...|+.... .+...--.++.+|...|+.+.|..++ ....-|+...+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44566778888887776654 24455556777788888888777777 211223344444444444
Q ss_pred HHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCC----CCcchHHHHHHHHHhcCChHHHH
Q 040338 305 KHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK----PTCVIWGALLGACCSHYNTKLAE 369 (385)
Q Consensus 305 ~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~li~~~~~~g~~~~a~ 369 (385)
..+-........ ...-..+...+...|+.++|.+.+=.+..+ -|...-..|+..+.--|..+.+.
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 444444444443 455556777888889999888877666553 45555667777777766444433
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.64 E-value=14 Score=29.01 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=25.1
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCch
Q 040338 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210 (385)
Q Consensus 161 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 210 (385)
++++.+.+.|++|+...|..+++.+.+.|.+. .+..+++.++-+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DS 60 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDS 60 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCc
Confidence 44455555666666666666666666666532 33444444444433
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.27 E-value=0.73 Score=25.04 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHHhcCChHHHH
Q 040338 348 TCVIWGALLGACCSHYNTKLAE 369 (385)
Q Consensus 348 ~~~~~~~li~~~~~~g~~~~a~ 369 (385)
+...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555555555555555553
No 288
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.23 E-value=12 Score=35.38 Aligned_cols=132 Identities=11% Similarity=-0.080 Sum_probs=70.7
Q ss_pred HHHhHHHHHHhcCChhHHHHHHHhccCC-CccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 89 IAKSSIDMHVKCGAVDYAESAFLRMLNP-SLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
.-+.++..+.+.|..++|+++--.-.++ .+....|+++.|.++..+ ..+..-|..|-.+....+++..|.+.|....
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 3445556666666666666553111000 001111333333333332 2455667777777777777777777776654
Q ss_pred HCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCC
Q 040338 168 NHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGS 247 (385)
Q Consensus 168 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~ 247 (385)
. |..|+-.+...|+.+....+-....+.|.. |.-..+|...|+
T Consensus 694 d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~----------------------------N~AF~~~~l~g~ 736 (794)
T KOG0276|consen 694 D---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN----------------------------NLAFLAYFLSGD 736 (794)
T ss_pred c---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc----------------------------chHHHHHHHcCC
Confidence 3 334454555556655444444444444431 333456667788
Q ss_pred hhHHHHHHHhcc
Q 040338 248 TQKADLAFELMS 259 (385)
Q Consensus 248 ~~~A~~~~~~m~ 259 (385)
++++.+++.+-.
T Consensus 737 ~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 737 YEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHHhcC
Confidence 888888876553
No 289
>PRK11906 transcriptional regulator; Provisional
Probab=86.21 E-value=28 Score=32.14 Aligned_cols=138 Identities=14% Similarity=-0.007 Sum_probs=82.9
Q ss_pred CChHHHHHHHHHHHHh-ccCCC-chHHHhHHHHHHhc---------CChhHHHHHHHhccCCCccccccchHHHHHHhcC
Q 040338 66 GNIKMALHLHGLVKKF-YFVSD-ESIAKSSIDMHVKC---------GAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQK 134 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~-g~~~~-~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~ 134 (385)
...+.|+.+|.+.... ...|+ ...|..+..++... ....+|.+.-++..+.+
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld----------------- 334 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT----------------- 334 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-----------------
Confidence 3456677777777622 23333 34455444443322 23455666666666655
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCch-HH
Q 040338 135 MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS-SMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDV-FV 212 (385)
Q Consensus 135 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 212 (385)
+.|..+...+..+..-.++++.|..+|++... +.|| ..+|...-..+.-.|+.++|.+.+++..+..+.--. .+
T Consensus 335 --~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 335 --TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred --CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 46666666666666777889999999988876 4564 334444444455568888998888887766543322 23
Q ss_pred HHHHHHHHHhcC
Q 040338 213 GSGLIDMYLKCG 224 (385)
Q Consensus 213 ~~~li~~~~~~g 224 (385)
.--.++.|+..+
T Consensus 411 ~~~~~~~~~~~~ 422 (458)
T PRK11906 411 IKECVDMYVPNP 422 (458)
T ss_pred HHHHHHHHcCCc
Confidence 333344666665
No 290
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=21 Score=30.72 Aligned_cols=144 Identities=11% Similarity=-0.002 Sum_probs=81.0
Q ss_pred HHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 040338 96 MHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSS 175 (385)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 175 (385)
.....|+..+|..+|+...... +.+...--.+..+|...|+.+.|..++..+...--....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-------------------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~ 203 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-------------------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAA 203 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-------------------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHH
Confidence 3445666777776666654433 233444555677777778888877777776433212222
Q ss_pred hhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHH
Q 040338 176 MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAF 255 (385)
Q Consensus 176 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 255 (385)
+....-|..+.+.....+...+-+..-.. +-|...--.+...+...|+.+.|.+.+
T Consensus 204 ~~l~a~i~ll~qaa~~~~~~~l~~~~aad------------------------Pdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 204 HGLQAQIELLEQAAATPEIQDLQRRLAAD------------------------PDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22223344444444444444444443322 123444456667777778888888877
Q ss_pred HhcccC-----ChhhHHHHHHHHHhcCCCCch
Q 040338 256 ELMSRR-----NMISWMVLISAFSQAGVLEKP 282 (385)
Q Consensus 256 ~~m~~~-----~~~~~~~li~~~~~~g~~~~a 282 (385)
-.+.++ |...-..|++.+.-.|..+.+
T Consensus 260 l~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 260 LALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 666543 556666777777666655543
No 291
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.09 E-value=6.6 Score=27.53 Aligned_cols=88 Identities=14% Similarity=0.067 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHH
Q 040338 66 GNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNT 145 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (385)
+..++|.-+-+.+...+-. ...+--+-+..+...|++++|..+.+. ++.||...|-+
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~----------------------~~~pdlepw~A 75 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNK----------------------LCYPDLEPWLA 75 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCC----------------------CCCchHHHHHH
Confidence 4455666555555543211 111211222344455666666665533 33678777766
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHH
Q 040338 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYA 179 (385)
Q Consensus 146 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 179 (385)
|-.. +.|..++...-+.+|...| .|...+|.
T Consensus 76 Lce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 76 LCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 6543 5666666666666676654 34444443
No 292
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.04 E-value=6.3 Score=31.75 Aligned_cols=78 Identities=9% Similarity=-0.067 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHH
Q 040338 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTM 146 (385)
Q Consensus 67 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 146 (385)
.=+.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+ +...-..+|+..+.+|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~---------------l~~~~~~~n~eil~sL 184 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALE---------------LSNPDDNFNPEILKSL 184 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHH---------------hcCCCCCCCHHHHHHH
Confidence 33677777777777765556666666666665 5778888888765432 2222225778888888
Q ss_pred HHHHHhCCCchHHH
Q 040338 147 ISILTRHGFGFETL 160 (385)
Q Consensus 147 i~~~~~~~~~~~a~ 160 (385)
.+.+.+.|+++.|.
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 88888888888774
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.01 E-value=14 Score=28.60 Aligned_cols=64 Identities=14% Similarity=-0.005 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhH-HHHHHhcCChhHHHHHHHhccCC
Q 040338 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSS-IDMHVKCGAVDYAESAFLRMLNP 116 (385)
Q Consensus 51 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~ 116 (385)
..+.||..+......++.+.+..+++.+.-. .|.......+ ...+.+.|++.+|.++|+++...
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4566777766666678999999999988764 5554433332 35566789999999999887553
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.87 E-value=1 Score=24.41 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=23.4
Q ss_pred HHHHHhccCCCchHHHhHHHHHHhcCChhHHH
Q 040338 76 GLVKKFYFVSDESIAKSSIDMHVKCGAVDYAE 107 (385)
Q Consensus 76 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 107 (385)
++.++.. |-+...|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4444443 447788999999999999998885
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.69 E-value=18 Score=29.60 Aligned_cols=66 Identities=8% Similarity=-0.158 Sum_probs=44.5
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
-+.+||.|--.+...|+++.|.+.|+...+.+..-+-...|--|. +.=.|++.-|.+-+-..-+..
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC
Confidence 356899999899999999999999999987543333333333333 233567777766555555443
No 296
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.48 E-value=20 Score=29.93 Aligned_cols=52 Identities=10% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc------hhhHHHHHHHHHccCCHHHHHHHH
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY------TCYFVCMVDLLGLSGLLGEAKKLI 340 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 340 (385)
|...|-.+....++..|...++.-.+.+. ..+...|+.+|- .|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 44555566667788888888887555444 566666777664 67778777765
No 297
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.38 E-value=23 Score=30.43 Aligned_cols=137 Identities=8% Similarity=-0.025 Sum_probs=80.2
Q ss_pred ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCC-----CCCcchHHHHHHHHHhC-C-
Q 040338 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP-----ERDLVSWNTMISILTRH-G- 154 (385)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~-~- 154 (385)
|.+++..-.-.+++.....-...+... |..+.+ .|..+.+|+++|+... -.|..+-..|++..... +
T Consensus 107 g~~Lt~~Dli~FL~~~i~~~~~~k~~~-Y~~LVk-----~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~ 180 (292)
T PF13929_consen 107 GCELTKEDLISFLKLVIINLSSNKSFN-YWDLVK-----RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT 180 (292)
T ss_pred CCCCcHHHHHHHHHHHHhccccccchH-HHHHHH-----hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc
Confidence 555555555555555444333333222 222222 2245677777777432 24666677777777662 2
Q ss_pred CchHHHHHHHHHHH-CCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh-CCCCchHHHHHHHHHHHhcC
Q 040338 155 FGFETLCTFIELWN-HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM-EPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 155 ~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 224 (385)
....-.++.+-+.. .|-.++..+...++..+++.+++..-.++++..... ++..|...|..+|+...+.|
T Consensus 181 ~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sg 252 (292)
T PF13929_consen 181 KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESG 252 (292)
T ss_pred chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcC
Confidence 22223344444433 346788888889999999999999999988887665 55556666655555554444
No 298
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.29 E-value=25 Score=30.86 Aligned_cols=140 Identities=9% Similarity=-0.042 Sum_probs=98.7
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCch
Q 040338 152 RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESS 231 (385)
Q Consensus 152 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~ 231 (385)
..|+..+|-..++++.+. .+.|...+...=.+|.-.|+...-...++.+... ..+|...|+-+-.
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~G------------- 179 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHG------------- 179 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHH-------------
Confidence 367777887788888765 5557777777778888888888888888877654 2345444432222
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH----------------HHHHHH
Q 040338 232 IQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF----------------FFVSLL 292 (385)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~----------------~~~~l~ 292 (385)
...-++..+|-+++|++.-++-.+ -|..+..++...+-..|+..++.++. -|-...
T Consensus 180 -----myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 180 -----MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA 254 (491)
T ss_pred -----HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence 223455678899999988887765 36667777888888889999998887 333344
Q ss_pred HHhcccCChhhHHHHHHHH
Q 040338 293 SGCSHSGPVTKGKHYFTAM 311 (385)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~ 311 (385)
-.+...+.++.|..+|+.-
T Consensus 255 l~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HhhhcccchhHHHHHHHHH
Confidence 4556678899999888863
No 299
>PF13934 ELYS: Nuclear pore complex assembly
Probab=85.08 E-value=21 Score=29.71 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 040338 290 SLLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSH 362 (385)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~ 362 (385)
.++.+....|+.+.|.+++....-... ......++.. ..++.+.||..+-+...++-....+..++..+...
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 455555556667777777766544333 3333434444 55688888888877776543345666777766643
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.92 E-value=1.6 Score=22.98 Aligned_cols=28 Identities=11% Similarity=-0.067 Sum_probs=19.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 354 ALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 354 ~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
.+..++.+.|++++|.+.|+++++..|.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3556677777888888888887776654
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.83 E-value=1.8 Score=23.16 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=21.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3567777888888888888888888766
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.02 E-value=6.4 Score=31.65 Aligned_cols=60 Identities=3% Similarity=-0.114 Sum_probs=31.7
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK 346 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (385)
.|..-..+..+.+.++.|+.--.+....++ .....--..+|.+..++++|+.=|..+.+.
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 455555555555666666555555555544 222223344555556666666666655553
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.80 E-value=2.4 Score=23.76 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888899999999999999888754
No 304
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.27 E-value=38 Score=31.25 Aligned_cols=138 Identities=10% Similarity=-0.122 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHh---cc-CCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchH
Q 040338 68 IKMALHLHGLVKKF---YF-VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSW 143 (385)
Q Consensus 68 ~~~a~~~~~~m~~~---g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (385)
.++...++...... |+ ..+......++... .|+...++.+++.....+.......+.++..........+...+
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~ 230 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEH 230 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHH
Confidence 45666666665432 43 45555555555433 68899998888876432111111222222221111112222344
Q ss_pred HHHHHHHHh---CCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccC-----ccchhhHHHHHHHhCCC
Q 040338 144 NTMISILTR---HGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD-----LEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 144 ~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 207 (385)
..+++++.+ ..+++.|+.++..|.+.|..|....-..++.++-..|. ..-|...++.....|.+
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 555666555 47899999999999999988876666666666555443 22344445555555653
No 305
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.23 E-value=49 Score=32.49 Aligned_cols=86 Identities=9% Similarity=0.014 Sum_probs=66.1
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTK 366 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~ 366 (385)
+.+--+.-+...|+-.+|.++-.+.+-.. ...|--=+.+++..+++++-+++-+.++ .+.-|.-++.+|.+.|+.+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fkipd-Kr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPD-KRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcc-hhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHH
Confidence 66666777777888888888877654333 3445556788999999999888877665 3678889999999999999
Q ss_pred HHHHHHHHHH
Q 040338 367 LAELVMRNLL 376 (385)
Q Consensus 367 ~a~~~~~~~~ 376 (385)
+|.+.+-+.-
T Consensus 762 EA~KYiprv~ 771 (829)
T KOG2280|consen 762 EAKKYIPRVG 771 (829)
T ss_pred HHhhhhhccC
Confidence 9998876653
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.16 E-value=4.2 Score=28.62 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 158 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
+..+-+..+....+.|+.....+.+++|.+.+|+..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 56666777777788999999999999999999999999999988775
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.88 E-value=2.5 Score=21.16 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=9.2
Q ss_pred HHHHHHccCCHHHHHHHHH
Q 040338 323 MVDLLGLSGLLGEAKKLID 341 (385)
Q Consensus 323 li~~~~~~g~~~~A~~~~~ 341 (385)
+...+...|++++|..+++
T Consensus 7 la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 4444445555555554443
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.75 E-value=5.8 Score=31.54 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=58.2
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHHHHHHHHHhCCCC---CCcchHHH---H
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK---PTCVIWGA---L 355 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~---l 355 (385)
.+..+..-|.+.|+.+.|.+.+.++..... ...+-.+|....-.+++..+...+.+...- +....... .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 677788888888888888888888777654 566667777777888888888887776653 21111111 1
Q ss_pred HH--HHHhcCChHHHHHHHHHH
Q 040338 356 LG--ACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 356 i~--~~~~~g~~~~a~~~~~~~ 375 (385)
.. ++...+++.+|-+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 12 234566777776666544
No 309
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.56 E-value=22 Score=28.03 Aligned_cols=140 Identities=11% Similarity=-0.005 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHH-hHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAK-SSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
..|..-+. ..+.+..++|+.-|.++.+.|...-+..-. ......++.|+...|...|+++-....
T Consensus 60 d~flaAL~----lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~---------- 125 (221)
T COG4649 60 DAFLAALK----LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS---------- 125 (221)
T ss_pred HHHHHHHH----HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC----------
Confidence 34555554 344799999999999999988764433322 233456778999999999998865443
Q ss_pred HHHhcCCCCCCcc-hHHHH--HHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 129 LIMFQKMPERDLV-SWNTM--ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 129 ~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
.|-+. -...| ...+..+|.++++..-.+-+-..|-+.-...-..|--+-.+.|++.+|.+.|..+....
T Consensus 126 --------~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 126 --------IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred --------CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 23222 11111 23456788899888888777655443334444566667778999999999999988765
Q ss_pred CCCchH
Q 040338 206 PSLDVF 211 (385)
Q Consensus 206 ~~~~~~ 211 (385)
..|...
T Consensus 198 ~aprni 203 (221)
T COG4649 198 QAPRNI 203 (221)
T ss_pred cCcHHH
Confidence 555443
No 310
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.44 E-value=20 Score=31.41 Aligned_cols=136 Identities=15% Similarity=-0.007 Sum_probs=84.6
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCC---Cccccc-------------cchHHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP---SLFCWK-------------FGIIRL 128 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~-------------~~~~~a 128 (385)
+|+..+|-..++++.+. +|.|...++-.=++|.-.|+...-...++++... +.+++. |.+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 57777777777777765 4556677777777777777777777777766433 332222 666666
Q ss_pred HHHhcCCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC---CCCCCHhhHHHHHHHhcCccCccchhhHHHHH
Q 040338 129 LIMFQKMP---ERDLVSWNTMISILTRHGFGFETLCTFIELWNH---GFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201 (385)
Q Consensus 129 ~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 201 (385)
++.-++-. +.|.-.-.++...+--.|+.+++.+++.+-... +--.-.+-|-...-.+...+.++.|+++|+.=
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 66555543 344555566777777788888888877654321 11111222333344566778899999988753
No 311
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.30 E-value=1.9 Score=25.07 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=15.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 040338 355 LLGACCSHYNTKLAELVMRNLLQL 378 (385)
Q Consensus 355 li~~~~~~g~~~~a~~~~~~~~~~ 378 (385)
|..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556666666666666666666643
No 312
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.16 E-value=2.9 Score=21.10 Aligned_cols=30 Identities=20% Similarity=-0.054 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 040338 351 IWGALLGACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 351 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
.|..+...+...|+++.|...+++.++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 456667777777788888887777776554
No 313
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.65 E-value=10 Score=31.01 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=52.3
Q ss_pred HHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 040338 90 AKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNH 169 (385)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 169 (385)
.+.-+..+.+.+.+.+++....+-.+.. +.|..+-..++..+|-.|+|++|...++..-..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-------------------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-------------------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-------------------CccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 3445566777778888887776554443 346667778889999999999998888776543
Q ss_pred C--CCCCHhhHHHHHHH
Q 040338 170 G--FGLSSMLYATAFSA 184 (385)
Q Consensus 170 g--~~p~~~t~~~ll~~ 184 (385)
. ..+-..+|..+|++
T Consensus 65 ~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 65 SPQDTVGASLYRHLIRC 81 (273)
T ss_pred CcccchHHHHHHHHHHH
Confidence 2 33445677777764
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.04 E-value=12 Score=32.05 Aligned_cols=58 Identities=10% Similarity=-0.112 Sum_probs=44.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 040338 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
++......|..+|.+.+|.++.+....- .+...|..|++.++..||--.+.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444566788899999999999888763 466678889999999998766666666553
No 315
>PRK09687 putative lyase; Provisional
Probab=80.58 E-value=37 Score=29.34 Aligned_cols=213 Identities=12% Similarity=-0.046 Sum_probs=100.8
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc----chhhHHHHHHHhCCCCchHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE----WGPHLHSRVVHMEPSLDVFV 212 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~ 212 (385)
.+|..+.-..+.++...|. +++...+..+... +|...-...+.+++..|+.. ++...+..+.. -.++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHHH
Confidence 5666666677777776664 3444444445432 34444445556666666532 34444444422 2355556
Q ss_pred HHHHHHHHHhcCCCCCCc---------------hhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcC
Q 040338 213 GSGLIDMYLKCGCNGIES---------------SIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAG 277 (385)
Q Consensus 213 ~~~li~~~~~~g~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 277 (385)
-...+.+++..+.....| +..+-...+.++++.++.+....+..-+.++|...-..-+.++.+.+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 656666666554333222 22233333444444444222222222222333333333333333221
Q ss_pred CCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHH
Q 040338 278 VLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357 (385)
Q Consensus 278 ~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~ 357 (385)
. ....+...+..+.......+-...+.++.+.|+ ..|...+-+..+.++ .....+.
T Consensus 188 ~---------------------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~--~~~~a~~ 243 (280)
T PRK09687 188 Y---------------------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT--VGDLIIE 243 (280)
T ss_pred C---------------------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc--hHHHHHH
Confidence 1 122334444444443334555556666666666 344444444444333 2335666
Q ss_pred HHHhcCChHHHHHHHHHHHhccc
Q 040338 358 ACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 358 ~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
++...|+. +|...+..+.+..+
T Consensus 244 ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 244 AAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHhcCCH-hHHHHHHHHHhhCC
Confidence 66666663 56666666665443
No 316
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.26 E-value=45 Score=30.10 Aligned_cols=145 Identities=14% Similarity=0.049 Sum_probs=89.6
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh--cCChhHHHHHH
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK--CGAVDYAESAF 110 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~a~~~~ 110 (385)
++..+.+.|..-+ .-..|.+|=.|+.. ...|+-..|.++-.+..+. +..|....-.|+.+-.. .|+.++|.+-|
T Consensus 68 sP~t~~Ryfr~rK--RdrgyqALStGliA-agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kf 143 (531)
T COG3898 68 SPYTARRYFRERK--RDRGYQALSTGLIA-AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKF 143 (531)
T ss_pred CcHHHHHHHHHHH--hhhHHHHHhhhhhh-hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHH
Confidence 6667777776533 22356666666665 3368888988887666543 45566666666654443 69999999999
Q ss_pred HhccCCCccccccchHHHHHHhcCCCCCCcch--HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhhHHHHHHHhcC
Q 040338 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVS--WNTMISILTRHGFGFETLCTFIELWNHGFGLS-SMLYATAFSARAS 187 (385)
Q Consensus 111 ~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 187 (385)
+-|... |.... .-.|.-.--+.|..+.|..+-+..-+ ..|. .......+...+.
T Consensus 144 eAMl~d---------------------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~ 200 (531)
T COG3898 144 EAMLDD---------------------PETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCA 200 (531)
T ss_pred HHHhcC---------------------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHh
Confidence 999642 11111 11122222456667666666666544 2343 3455667777778
Q ss_pred ccCccchhhHHHHHHHh
Q 040338 188 VYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 188 ~~~~~~a~~~~~~~~~~ 204 (385)
.||++.|+++.+.-+..
T Consensus 201 ~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 201 AGDWDGALKLVDAQRAA 217 (531)
T ss_pred cCChHHHHHHHHHHHHH
Confidence 88888888887766554
No 317
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.75 E-value=30 Score=27.83 Aligned_cols=129 Identities=8% Similarity=-0.016 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHh--HHHHHHhcCChhHHHHHHHhccCCCccccccchH
Q 040338 49 LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKS--SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGII 126 (385)
Q Consensus 49 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 126 (385)
...|..++..... +.+ +.....+.+...+....-.++.+ +...+..++++++|...++....
T Consensus 54 S~~Y~~~i~~~~a----k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----------- 117 (207)
T COG2976 54 SAQYQNAIKAVQA----KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----------- 117 (207)
T ss_pred HHHHHHHHHHHhc----CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc-----------
Confidence 4567777776433 444 55555566665432212222222 34567778999999988876543
Q ss_pred HHHHHhcCCCCCCcchHHH-----HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHH
Q 040338 127 RLLIMFQKMPERDLVSWNT-----MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRV 201 (385)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 201 (385)
.|....+.. |-......|++|+|+.+++...+.+..+ .....--+.+...|+-++|..-|+..
T Consensus 118 ----------~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 118 ----------QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred ----------cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHH
Confidence 222233333 4466788899999999998876554332 12223345677889999999999998
Q ss_pred HHhC
Q 040338 202 VHME 205 (385)
Q Consensus 202 ~~~~ 205 (385)
+..+
T Consensus 186 l~~~ 189 (207)
T COG2976 186 LESD 189 (207)
T ss_pred HHcc
Confidence 8876
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.39 E-value=3.7 Score=21.69 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
.|..+-..+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667777888888888888887765
No 319
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=78.72 E-value=11 Score=36.05 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=54.7
Q ss_pred HHHHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHHHHHccCCHH------HHHHHHHhCCCCCCcchHHHHHHH
Q 040338 290 SLLSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVDLLGLSGLLG------EAKKLIDEMPSKPTCVIWGALLGA 358 (385)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~p~~~~~~~li~~ 358 (385)
+++++|..+|++-.+.++++.....+. .+.+|..|+...+.|.++ .|.++++...-+-|..||..|+++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 677888888888888888888877665 778888888888888643 466666666655777888887776
Q ss_pred HHhc
Q 040338 359 CCSH 362 (385)
Q Consensus 359 ~~~~ 362 (385)
-...
T Consensus 113 sln~ 116 (1117)
T COG5108 113 SLNP 116 (1117)
T ss_pred hcCh
Confidence 5543
No 320
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.59 E-value=15 Score=25.69 Aligned_cols=46 Identities=7% Similarity=-0.025 Sum_probs=37.2
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 183 (385)
.|++.+-.+.+.+|-+.+++.-|.++|+-.+.+ +..+...|..++.
T Consensus 39 VP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 39 VPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 688899999999999999999999999988754 3334557776664
No 321
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.16 E-value=57 Score=30.09 Aligned_cols=140 Identities=11% Similarity=-0.038 Sum_probs=86.7
Q ss_pred hhhhHHHHHhhhCC---CC------hhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHH--HhcC
Q 040338 33 LIDDDYRVFCDIGP---RY------LFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH--VKCG 101 (385)
Q Consensus 33 ~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g 101 (385)
++++|.++|.++-. .+ .+.-+-+|++|-. .+++.....+....+. .| ...|-.|..++ -+.+
T Consensus 21 ~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl----~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 21 KFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL----NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred hhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH----hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 88999999988761 12 2234677887765 8888888888888775 23 33344554433 3568
Q ss_pred ChhHHHHHHHhccCCCccccccchHHHHHHhcCCC----CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC----CCC
Q 040338 102 AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMP----ERDLVSWNTMISILTRHGFGFETLCTFIELWNHG----FGL 173 (385)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p 173 (385)
..++|.+.+..=... .+.....+-... -+|..-=+..+.++...|++.++..++++|...= ..-
T Consensus 94 ~~~kal~~ls~w~~~--------~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 94 EYRKALQALSVWKEQ--------IKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred hHHHHHHHHHHHHhh--------hcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 888888877443221 000000000000 0222233567788999999999999999887653 337
Q ss_pred CHhhHHHHHHHhcC
Q 040338 174 SSMLYATAFSARAS 187 (385)
Q Consensus 174 ~~~t~~~ll~~~~~ 187 (385)
+..+|+.++-.+++
T Consensus 166 ~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 166 NSDMYDRAVLMLSR 179 (549)
T ss_pred cHHHHHHHHHHHhH
Confidence 88899886555544
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.14 E-value=14 Score=31.64 Aligned_cols=56 Identities=11% Similarity=0.034 Sum_probs=37.6
Q ss_pred HHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 93 SIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
.-..|.++|.+.+|.++.++...-+ +.+...|..|+..++..|+--.+.+-++.|.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-------------------pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-------------------PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-------------------hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3456666777777777776665555 4566677777777777777666666666663
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.03 E-value=4 Score=24.88 Aligned_cols=28 Identities=14% Similarity=-0.009 Sum_probs=21.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 355 LLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 355 li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+.-++.+.|++++|.+..+.+++..|.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 4557788888999999888888888765
No 324
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.89 E-value=26 Score=29.89 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=65.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHC--CCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHH
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNH--GFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYL 221 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 221 (385)
-.=|.+++..++|.+++.+.-.--.. .++|.+. -..|-.|++.+....+.++-+.-++.--.-+..-|.++...|
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy- 163 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY- 163 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH-
Confidence 34478999999999998776555432 2444443 344556889999999988888887764334444577776655
Q ss_pred hcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHH
Q 040338 222 KCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE 256 (385)
Q Consensus 222 ~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 256 (385)
+...+.-.|.+++|+++..
T Consensus 164 ----------------Ll~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 164 ----------------LLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ----------------HHHHHhccccHHHHHHHHh
Confidence 4456667899999998883
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.81 E-value=11 Score=32.68 Aligned_cols=80 Identities=14% Similarity=-0.022 Sum_probs=61.4
Q ss_pred hhhhHHHHHhhhC-CC------ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhH
Q 040338 33 LIDDDYRVFCDIG-PR------YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDY 105 (385)
Q Consensus 33 ~~~~A~~~~~~~~-~~------~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 105 (385)
.++++...+-++. .| +... .+.++-+. .-++++++.++..=++.|+-||..+++.+|+.+.+.++..+
T Consensus 79 ~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~ 153 (418)
T KOG4570|consen 79 EIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKD 153 (418)
T ss_pred chhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH----ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHH
Confidence 6777777776665 22 2222 23444332 47888999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCC
Q 040338 106 AESAFLRMLNPS 117 (385)
Q Consensus 106 a~~~~~~m~~~~ 117 (385)
|.++.-.|...+
T Consensus 154 aa~vvt~~~~qe 165 (418)
T KOG4570|consen 154 AASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHHHH
Confidence 999987775443
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.65 E-value=32 Score=26.36 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHh-HHHHHHhcCChhHHHHHHHhccCCC
Q 040338 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKS-SIDMHVKCGAVDYAESAFLRMLNPS 117 (385)
Q Consensus 51 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~ 117 (385)
.-+.||..+.......+++++..+++.|.-. .|+..-... -...+...|++.+|.++|+++.+..
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3455666655555578888888888888653 444332222 2244566788888888888776543
No 327
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.18 E-value=16 Score=29.03 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHhccc-h---------hhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 040338 301 VTKGKHYFTAMAKFTY-T---------CYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYN 364 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~-~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~ 364 (385)
++.|..+|+.+.+... + ..-...+-.|.+.|.+++|.+++++....|+......-+....+.+|
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHccc
Confidence 4556666666555443 1 11223455678888888888888888776666665555555555443
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.08 E-value=9.5 Score=31.19 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc-----hhhHHHHHH
Q 040338 267 MVLISAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY-----TCYFVCMVD 325 (385)
Q Consensus 267 ~~li~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~ 325 (385)
+..++.+.+.+.+.+++... +-..++..++-.|++++|..-++......+ ...|..+|.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 33445555555666555555 555666666666777766665555544433 444444444
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.64 E-value=41 Score=27.23 Aligned_cols=74 Identities=14% Similarity=-0.043 Sum_probs=55.2
Q ss_pred hhhhHHHHHhhhCC-CChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh---ccCCCchHHHhHHHHHHhcCChhHHH
Q 040338 33 LIDDDYRVFCDIGP-RYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF---YFVSDESIAKSSIDMHVKCGAVDYAE 107 (385)
Q Consensus 33 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~ 107 (385)
+=++|.+.|-.+.. |...+ ..|..+++.+-...+.+++.+++....+. +-.+|+..+.+|+..|-+.|+.+.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 67889999988873 32222 33444444443469999999999998875 33678999999999999999999874
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.57 E-value=58 Score=28.90 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHhCCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP------TCVIWGALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
..++..+.+.+.+.|+++.|...+..+.... .....-.-+......|+..+|+..+++..+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677888889999999999999998887631 344455566777888999999999988877
No 331
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.06 E-value=10 Score=22.55 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=29.1
Q ss_pred ccCChHHHHHHHHHHHHhccCCCchHHHhHHHH
Q 040338 64 CVGNIKMALHLHGLVKKFYFVSDESIAKSSIDM 96 (385)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 96 (385)
+.|-+.++..+++.|.+.|+..+...|..++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 379999999999999999999999999887753
No 332
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=74.96 E-value=69 Score=29.47 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=46.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 040338 319 YFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 379 (385)
-...|++-|...|.+.+|.+-++++--. .....+.+++.+..+.|+-...+.++++..+.|
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3456788888899999999888887653 345678888888888888777777777776554
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.40 E-value=28 Score=24.65 Aligned_cols=46 Identities=7% Similarity=-0.047 Sum_probs=29.6
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 183 (385)
.|++.+..+.+.+|.+.+++.-|.++|+-.+.. +.+....|..++.
T Consensus 42 VP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 42 VPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 577888888888888888888888888877664 3333336666654
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.91 E-value=4.1 Score=23.73 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=12.7
Q ss_pred HHHHhcCccCccchhhHHHHHHHh
Q 040338 181 AFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 181 ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 335
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=73.20 E-value=27 Score=26.71 Aligned_cols=63 Identities=10% Similarity=0.049 Sum_probs=45.5
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 161 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
++...+++.|++++..= ..++..+...++.-.|.++++.+.+.++..+..|--.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 45566677787776543 2566677777777899999999999888877776666666666666
No 336
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=71.98 E-value=19 Score=31.89 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=37.3
Q ss_pred CCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-------CChh-hH-----HHHHHHHHhcCCCCchHHHH
Q 040338 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSR-------RNMI-SW-----MVLISAFSQAGVLEKPRFFF 286 (385)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~-~~-----~~li~~~~~~g~~~~a~~~~ 286 (385)
......++..|...|....|+++|.-+..+.-+ .|.. -| ..|.-++...|.+..|.+.-
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C 229 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECC 229 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 445567888899999999999988766655432 2221 12 22344566677776666554
No 337
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.61 E-value=43 Score=25.56 Aligned_cols=82 Identities=12% Similarity=-0.039 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCC---C--CCCHhhHHHHHHHhcCccC-ccchhhHHHHHHHhCCCCchHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWNHG---F--GLSSMLYATAFSARASVYD-LEWGPHLHSRVVHMEPSLDVFVGSG 215 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~--~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 215 (385)
..|.++.-....+.+...+.+++.+..-. + ..+..+|.+++.+.++..- --.+..+|..+.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46888888888889999999998884421 1 2355679999999977766 4567888999998888999999988
Q ss_pred HHHHHHhc
Q 040338 216 LIDMYLKC 223 (385)
Q Consensus 216 li~~~~~~ 223 (385)
+|++..+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88876654
No 338
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.78 E-value=18 Score=26.65 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 158 ETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 158 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
+..+-+..+...++.|+......-+++|.+.+|+..|.++++-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566666777788899999999999999999999999999888765
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.67 E-value=13 Score=24.81 Aligned_cols=43 Identities=12% Similarity=-0.047 Sum_probs=24.5
Q ss_pred ccCCHHHHHHHHHhCCCC----CC-cchHHHHHHHHHhcCChHHHHHH
Q 040338 329 LSGLLGEAKKLIDEMPSK----PT-CVIWGALLGACCSHYNTKLAELV 371 (385)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~----p~-~~~~~~li~~~~~~g~~~~a~~~ 371 (385)
.+.+.+.|+..++...++ |+ ..++..|+++|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666555543 11 12455666677777766666554
No 340
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.71 E-value=87 Score=30.98 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=46.5
Q ss_pred HHhcccCChhhHHHHHHHHHhccc----hhhHHHHH---------------------HHHHccCCHHHHHHHHHhCCCCC
Q 040338 293 SGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMV---------------------DLLGLSGLLGEAKKLIDEMPSKP 347 (385)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~li---------------------~~~~~~g~~~~A~~~~~~m~~~p 347 (385)
+.|...+..+.|.+.|.+.-+..+ ...+..|+ ..+++.|.++...+.+
T Consensus 295 S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YW------- 367 (1226)
T KOG4279|consen 295 SNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYW------- 367 (1226)
T ss_pred cCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHH-------
Confidence 445555666677777777665444 12222222 2234444444444443
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 348 TCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 348 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
|+. +.+.+-.-++++.+|.+..+.|.+++++.+
T Consensus 368 dV~---~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 368 DVA---TYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hHH---HhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 222 244455557788999999999988887754
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.44 E-value=53 Score=31.46 Aligned_cols=103 Identities=20% Similarity=0.008 Sum_probs=79.2
Q ss_pred HHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH----HHHHHHHHhcccCChhhHHHHHHHHHhccc
Q 040338 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY 316 (385)
Q Consensus 241 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (385)
...+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.| -|..|+..+...|+.+....+-....+.|.
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 345677888888776544 45678999999999999999999999 788888888889988777666666666654
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCC
Q 040338 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPT 348 (385)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 348 (385)
.|.-.-+|...|+++++.+++.+-.+-|.
T Consensus 724 ---~N~AF~~~~l~g~~~~C~~lLi~t~r~pe 752 (794)
T KOG0276|consen 724 ---NNLAFLAYFLSGDYEECLELLISTQRLPE 752 (794)
T ss_pred ---cchHHHHHHHcCCHHHHHHHHHhcCcCcH
Confidence 33344567789999999999988765443
No 342
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=69.15 E-value=29 Score=23.97 Aligned_cols=46 Identities=4% Similarity=0.086 Sum_probs=27.2
Q ss_pred HHHHHHHHcccchhhHHh-------hhhhHHHHHhhhCCCChhhHHHHHHHHH
Q 040338 15 KIHAQLISTCLISSIFLQ-------LIDDDYRVFCDIGPRYLFTYNTMINGGV 60 (385)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~li~~~~ 60 (385)
.|++.+++.|+-.+.-.. +.+.+.++++.++.+++.+|..+..++.
T Consensus 24 ~v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 24 ELLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 355666666543333332 6666666777666666666766666653
No 343
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.60 E-value=8.3 Score=33.76 Aligned_cols=52 Identities=6% Similarity=-0.123 Sum_probs=40.3
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCccCccchhhHHHHH
Q 040338 148 SILTRHGFGFETLCTFIELWNHGFGL-SSMLYATAFSARASVYDLEWGPHLHSRV 201 (385)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 201 (385)
+-|.+.|++++|+++|..-.. +.| |.+++..-..+|.+.+.+..|+.--...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 357889999999999988665 467 8889988888999888877665443333
No 344
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=68.33 E-value=33 Score=23.35 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHHcccchhhHHh-------hhhhHHHHHhhhCCCChhhHHHHHHHHHh
Q 040338 15 KIHAQLISTCLISSIFLQ-------LIDDDYRVFCDIGPRYLFTYNTMINGGVR 61 (385)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 61 (385)
.|++.+.+.|+-...-.. +.++|.++++.++.++..+|.....++..
T Consensus 20 ~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~ 73 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRE 73 (84)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456666666533332222 66666666666666666666666666544
No 345
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=67.85 E-value=89 Score=27.73 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=35.4
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhcc------chhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFT------YTCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
+|..+...+.+.|.++.|...+..+...+ .+.+.-...+.+-..|+..+|...+++...
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666666644 244444445555666666666666655443
No 346
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.81 E-value=36 Score=27.35 Aligned_cols=51 Identities=10% Similarity=-0.037 Sum_probs=39.4
Q ss_pred cCChHHHHHHHHHHHHh-ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccC
Q 040338 65 VGNIKMALHLHGLVKKF-YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 115 (385)
..+.+......+...+. ...|++.+|..++.++...|+.++|.+...++..
T Consensus 121 ~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 121 PPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555443 4579999999999999999999999999887643
No 347
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=67.14 E-value=88 Score=27.45 Aligned_cols=90 Identities=9% Similarity=-0.190 Sum_probs=57.5
Q ss_pred hccCChHHHHHHHHHHHHhcc----CCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCC
Q 040338 63 LCVGNIKMALHLHGLVKKFYF----VSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPER 138 (385)
Q Consensus 63 ~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~ 138 (385)
+...-.+.|.+.|+.....+. ..++..-..++....+.|+.+.-..+++.... .+
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---------------------~~ 199 (324)
T PF11838_consen 141 GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---------------------ST 199 (324)
T ss_dssp T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---------------------TS
T ss_pred cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---------------------cC
Confidence 334557788888888887522 34556666777777777776665555555443 34
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCC
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHG-FGL 173 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p 173 (385)
+..-...++.+++...+++...++++.....+ +++
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 56667888888888888888888888888754 443
No 348
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=67.01 E-value=1.2e+02 Score=29.00 Aligned_cols=118 Identities=10% Similarity=0.008 Sum_probs=72.9
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHh-hhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh-cCChhHHHHHH
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVR-CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK-CGAVDYAESAF 110 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~ 110 (385)
.++.++.+++.+...-+..|. .-..|+. -.+.|..+.+.++|+.-++ |++.+...|...+..++. .|+.+...+.|
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~g-yW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYG-YWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 455566666655522222221 2222221 2237888889999988887 477788888877765554 57777777778
Q ss_pred HhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 111 LRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 111 ~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
++..+.... .=.+...|...|..-...++++....+|++.++
T Consensus 138 e~A~~~vG~----------------dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 138 ERAKSYVGL----------------DFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHhccc----------------chhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 776543210 013445677777777777778888888887765
No 349
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.94 E-value=38 Score=23.17 Aligned_cols=65 Identities=11% Similarity=-0.032 Sum_probs=43.3
Q ss_pred HHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 040338 304 GKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 304 a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
..++++.....+. ......+-.+-...|+.+.|.+++..+.. ....|..++.++...|..+-|.+
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~r--g~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIVQ--KEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhcc--CCcHHHHHHHHHHHcCchhhhhc
Confidence 3456677777766 22223222222356889999999999983 44567889999998888766643
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.28 E-value=83 Score=26.86 Aligned_cols=178 Identities=10% Similarity=-0.007 Sum_probs=93.0
Q ss_pred CCCCcchHHHHHHH-HHhCCCchHHHHHHHHHHHCCCCCCHh---hHHHHHHHhcCccCccchhhHHHHHHHhCCCCchH
Q 040338 136 PERDLVSWNTMISI-LTRHGFGFETLCTFIELWNHGFGLSSM---LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVF 211 (385)
Q Consensus 136 ~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 211 (385)
.+||+..=|..-.+ -.+...+++|+.-|++..+..-.-... ....++....+.+++++....+.+++.-
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY------- 94 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY------- 94 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-------
Confidence 35776654433222 123457888888888887643222222 2334667777777777777777666532
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH--HHH
Q 040338 212 VGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF--FFV 289 (385)
Q Consensus 212 ~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~--~~~ 289 (385)
+-+++-+ ..+..+.|++++-...+.+.+.-.++++. -+.++-.+.+ .++| +-+
T Consensus 95 IkSAVTr----------NySEKsIN~IlDyiStS~~m~LLQ~FYeT-----------TL~ALkdAKN----eRLWFKTNt 149 (440)
T KOG1464|consen 95 IKSAVTR----------NYSEKSINSILDYISTSKNMDLLQEFYET-----------TLDALKDAKN----ERLWFKTNT 149 (440)
T ss_pred HHHHHhc----------cccHHHHHHHHHHHhhhhhhHHHHHHHHH-----------HHHHHHhhhc----ceeeeeccc
Confidence 1111111 12334455555555555555444444432 2223222111 1122 334
Q ss_pred HHHHHhcccCChhhHHHHHHHHHhccc--------------hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 290 SLLSGCSHSGPVTKGKHYFTAMAKFTY--------------TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
.+...|...+++.+..++++++..... ..+|..-|..|..+.+-.....+|+....
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 455555566666666666666554322 55666667777777776666667765544
No 351
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.28 E-value=23 Score=25.41 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=16.2
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHh
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAK 313 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (385)
|..++.-|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555556666666666666666655
No 352
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=66.27 E-value=15 Score=24.41 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcC
Q 040338 53 NTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG 101 (385)
Q Consensus 53 ~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 101 (385)
..++..+..+.-.++.+.+.+++++..+.|.+|.....+.+.-+..+-|
T Consensus 2 ~~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 2 EELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444444445556999999999999999998888777777777665544
No 353
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.19 E-value=51 Score=24.41 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHh
Q 040338 303 KGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDE 342 (385)
Q Consensus 303 ~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 342 (385)
.+..+|+.|...+. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888999888888 78888888888899999999998864
No 354
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=65.58 E-value=24 Score=28.91 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=38.4
Q ss_pred CCCchHHHH-----HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHH--HccCCHHHHHHHHHh
Q 040338 278 VLEKPRFFF-----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLL--GLSGLLGEAKKLIDE 342 (385)
Q Consensus 278 ~~~~a~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~ 342 (385)
++..++.+. +||.+.--+...|+++.|.+.|+...+.++..-|..+-++. --.|++.-|.+=|..
T Consensus 87 DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 87 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 444555444 66666666667777777777777777766644444443332 335666666554433
No 355
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.05 E-value=49 Score=23.72 Aligned_cols=77 Identities=14% Similarity=-0.016 Sum_probs=50.5
Q ss_pred CChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 299 GPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-KPTCVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
...++|..|.+.+...+. ..+--+-+..+.+.|++++| ++..... .||...|-+|- -.+.|..+++...+.++
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 346788888888877777 33444456678899999999 3333333 38888877664 45778888888888776
Q ss_pred Hhcc
Q 040338 376 LQLD 379 (385)
Q Consensus 376 ~~~~ 379 (385)
...|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 5544
No 356
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=64.79 E-value=70 Score=25.45 Aligned_cols=165 Identities=12% Similarity=-0.024 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHh-ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHH
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKF-YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRL 128 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a 128 (385)
..+......+.. .+.+..+...+...... ........+......+...++...+.+.+........
T Consensus 60 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 126 (291)
T COG0457 60 GLLLLLALALLK---LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP---------- 126 (291)
T ss_pred HHHHHHHHHHHH---cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC----------
Confidence 444555555444 67788888777777653 2344556666667777777778888888777655432
Q ss_pred HHHhcCCCCCCcchHHHHHH-HHHhCCCchHHHHHHHHHHHCCCCC----CHhhHHHHHHHhcCccCccchhhHHHHHHH
Q 040338 129 LIMFQKMPERDLVSWNTMIS-ILTRHGFGFETLCTFIELWNHGFGL----SSMLYATAFSARASVYDLEWGPHLHSRVVH 203 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 203 (385)
.+......... .+...|+++.+...+.+... ..| ....+......+...++.+.+...+.....
T Consensus 127 ---------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 127 ---------DPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred ---------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 11222223333 67788888888888888855 233 233333334445566777788877777776
Q ss_pred hCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc
Q 040338 204 MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR 260 (385)
Q Consensus 204 ~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (385)
..... ....+..+...+...++.+.|...+.....
T Consensus 196 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LNPDD----------------------DAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hCccc----------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 54321 123345555666666677888877777765
No 357
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.70 E-value=58 Score=24.14 Aligned_cols=46 Identities=7% Similarity=-0.050 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHhccCCC-chHHHhHHHHHHhcCChhHHHHHHHh
Q 040338 67 NIKMALHLHGLVKKFYFVSD-ESIAKSSIDMHVKCGAVDYAESAFLR 112 (385)
Q Consensus 67 ~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (385)
..+.+.++|..|...|+.-. +..|......+...|++++|.++|+.
T Consensus 78 ~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 78 LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33499999999999987554 45678888899999999999999864
No 358
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=63.09 E-value=32 Score=23.43 Aligned_cols=44 Identities=14% Similarity=-0.017 Sum_probs=39.6
Q ss_pred HHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCC
Q 040338 73 HLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP 116 (385)
Q Consensus 73 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 116 (385)
++|+-....|+..|..+|..+++.+.-+=-.+...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 89999999999999999999999998888888889999988654
No 359
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.08 E-value=19 Score=29.15 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=10.4
Q ss_pred HHHcCCChhHHHHHHHhcc
Q 040338 241 MYAEGGSTQKADLAFELMS 259 (385)
Q Consensus 241 ~~~~~g~~~~A~~~~~~m~ 259 (385)
-+.+.|++++|..-|....
T Consensus 104 ~~F~ngdyeeA~skY~~Al 122 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEAL 122 (271)
T ss_pred HhhhcccHHHHHHHHHHHH
Confidence 3445566666665555444
No 360
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.00 E-value=1.6e+02 Score=28.92 Aligned_cols=135 Identities=8% Similarity=-0.091 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCch-----HHHhHHHHHHhcCChhHHHHHHHhccCCCccccccch
Q 040338 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDES-----IAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGI 125 (385)
Q Consensus 51 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 125 (385)
++-.+...+... ..++++|...+++.....-.++.. ....++..+.+.+... |...+++..+.
T Consensus 61 ~~l~la~iL~~e--T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~--------- 128 (608)
T PF10345_consen 61 VRLRLASILLEE--TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED--------- 128 (608)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH---------
Confidence 334444444322 567777777777554432222211 1223445555554444 66666554321
Q ss_pred HHHHHHhcCCCC-CCcchHHHH-HHHHHhCCCchHHHHHHHHHHHCC---CCCCHhhHHHHHHHhc--CccCccchhhHH
Q 040338 126 IRLLIMFQKMPE-RDLVSWNTM-ISILTRHGFGFETLCTFIELWNHG---FGLSSMLYATAFSARA--SVYDLEWGPHLH 198 (385)
Q Consensus 126 ~~a~~~~~~~~~-~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~~~~~~a~~~~ 198 (385)
++..+. +-...|..+ +..+...+++..|.+.++.+...- ..|-...+..++.+.. +.+..+++.+..
T Consensus 129 ------~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 129 ------SETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred ------HhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 111101 112233333 333334478999999998886542 3344455555555544 445556677777
Q ss_pred HHHHH
Q 040338 199 SRVVH 203 (385)
Q Consensus 199 ~~~~~ 203 (385)
+.+..
T Consensus 203 ~~~~~ 207 (608)
T PF10345_consen 203 QRAIA 207 (608)
T ss_pred HHHHH
Confidence 66644
No 361
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.26 E-value=11 Score=32.41 Aligned_cols=36 Identities=6% Similarity=-0.005 Sum_probs=30.1
Q ss_pred CCcch-HHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 347 PTCVI-WGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 347 p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
|+..+ |+..|..-.+.||.++|+++++|..++|...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 44444 6789999999999999999999999998764
No 362
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.75 E-value=2.9e+02 Score=31.62 Aligned_cols=64 Identities=13% Similarity=0.006 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 040338 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
...|....+...++|+++.|...+-...+.--...+--...-....|+...|+.++++..+.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 6677777777777999999998876666543344555667778889999999999999885443
No 363
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.63 E-value=27 Score=22.08 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=13.4
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC
Q 040338 322 CMVDLLGLSGLLGEAKKLIDEMP 344 (385)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~ 344 (385)
.+|.+|...|++++|.+.++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 35666666666666666665543
No 364
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=61.23 E-value=17 Score=31.35 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=33.2
Q ss_pred CCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040338 138 RDLVS-WNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF 182 (385)
Q Consensus 138 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 182 (385)
||..+ ||..|....+.|++++|+.++++.++.|+.--..||-..+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 44443 6788888888888888888888888888776666654443
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.16 E-value=49 Score=22.65 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=33.2
Q ss_pred HcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCch
Q 040338 243 AEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282 (385)
Q Consensus 243 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a 282 (385)
.+.|+.+.|.++++.+. +....|...+.++...|.-.-|
T Consensus 47 ~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 47 ENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred cccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 35689999999999999 8889999999999988875544
No 366
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.55 E-value=57 Score=27.42 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccccC
Q 040338 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 382 (385)
+.+..+-+++...|++-++++--.++... .|+..|-.=..|.+...+.++|.+=|.+.++++|.-
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 34444556666778888888777777664 456677777777777888888888888888777653
No 367
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.93 E-value=2e+02 Score=29.15 Aligned_cols=69 Identities=7% Similarity=-0.267 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHhC-CCchHHHHHHHHHHHCCCCCCHhhHH--HHHHHhcCccCccchhhHHHHHHHhCCCC
Q 040338 140 LVSWNTMISILTRH-GFGFETLCTFIELWNHGFGLSSMLYA--TAFSARASVYDLEWGPHLHSRVVHMEPSL 208 (385)
Q Consensus 140 ~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 208 (385)
..++..++.++.+. +...++..-+..-......|-...+. .|.......|++++|...++++......+
T Consensus 580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 34555566666552 22333333443333333333233232 57778889999999999999988765444
No 368
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.87 E-value=26 Score=29.58 Aligned_cols=55 Identities=18% Similarity=-0.007 Sum_probs=32.2
Q ss_pred HHHHHHHccCCHHHHHHHHHhCCC-----C---CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 040338 322 CMVDLLGLSGLLGEAKKLIDEMPS-----K---PTCVIWGALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~-----~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
.+..-|.+.|++++|.++|+.+.. . +...+...+..++...|+.+....+.=++.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 355556666777777776666632 1 223344556666777777777666654443
No 369
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.73 E-value=1.8e+02 Score=28.55 Aligned_cols=20 Identities=10% Similarity=-0.112 Sum_probs=14.9
Q ss_pred HHHHHHcCCChhHHHHHHHh
Q 040338 238 LVTMYAEGGSTQKADLAFEL 257 (385)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~ 257 (385)
....+.-.|.++.|.+.+-.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 35566678899999999877
No 370
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=59.54 E-value=2.2e+02 Score=29.52 Aligned_cols=230 Identities=10% Similarity=-0.046 Sum_probs=108.4
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGL 216 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 216 (385)
.+|..+--..+..+.+.+. +++...+....+. +|...-...+.++.+.+........+..+++. +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 4555555555666665554 3344444444432 23333333444443332221222233333322 444444445
Q ss_pred HHHHHhcCCCC--------CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCc-hHHHH-
Q 040338 217 IDMYLKCGCNG--------IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEK-PRFFF- 286 (385)
Q Consensus 217 i~~~~~~g~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~-a~~~~- 286 (385)
+.++...+..+ ..+|...-...+.++.+.+..+ .+.....+++...-...+.++...+..+. +...+
T Consensus 705 ~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~ 781 (897)
T PRK13800 705 LDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVR 781 (897)
T ss_pred HHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHH
Confidence 55554433111 2233333344444444443322 22233344555555555556655554332 11212
Q ss_pred ---------HHHHHHHHhcccCChhhHHHHHHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHH
Q 040338 287 ---------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLG 357 (385)
Q Consensus 287 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~ 357 (385)
.-...+.++...|..+.+...+..+.+.....+-...+.++.+.+. +++...+..+...|+...=...+.
T Consensus 782 ~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 782 ALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCHHHHHHHHH
Confidence 5556666666666655444444444444334444445666666654 456666666666666666666777
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 040338 358 ACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 358 ~~~~~g~~~~a~~~~~~~~~ 377 (385)
++.+.+....+...+....+
T Consensus 861 aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 861 ALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhccCCCHHHHHHHHHHHh
Confidence 77775333455555555543
No 371
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=59.22 E-value=23 Score=22.72 Aligned_cols=56 Identities=7% Similarity=-0.222 Sum_probs=42.8
Q ss_pred hCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCCh
Q 040338 44 IGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAV 103 (385)
Q Consensus 44 ~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 103 (385)
+..|....++.++...+. ..-++.++..+++..+.|. .+..+|-.-++.+++.--+
T Consensus 3 ~v~~~~~l~~Ql~el~Ae---d~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF~ 58 (65)
T PF09454_consen 3 IVVAEDPLSNQLYELVAE---DHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQFL 58 (65)
T ss_dssp TEE-SSHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 345666778999999777 7889999999999999985 5778888888888775433
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.94 E-value=65 Score=28.35 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=28.4
Q ss_pred cCChHHHHHHHHHHHHhcc-CCCchHHHhHHHHHHhcCChhHHHHHHHh
Q 040338 65 VGNIKMALHLHGLVKKFYF-VSDESIAKSSIDMHVKCGAVDYAESAFLR 112 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (385)
.|+..+|.+.++++.+.-. ..-..+...||.++.+..-+.++..++.+
T Consensus 288 lGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 288 LGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred hhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888888888888766421 11123344567776666555555555544
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.79 E-value=30 Score=27.88 Aligned_cols=34 Identities=12% Similarity=-0.046 Sum_probs=24.2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 040338 347 PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 347 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
|+...|..++.++...|+.++|.++.+++...-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7777777777777777777777777777665544
No 374
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.70 E-value=1.5e+02 Score=27.32 Aligned_cols=51 Identities=10% Similarity=-0.138 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcC
Q 040338 51 TYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCG 101 (385)
Q Consensus 51 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 101 (385)
.+..+++++.+..+..+++.|+..+..|.+.|..|....-..++.++-.-|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 344566666665556788888888888888887766444444444443333
No 375
>PRK09462 fur ferric uptake regulator; Provisional
Probab=57.95 E-value=83 Score=24.04 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=37.1
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhcCc-cCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 164 IELWNHGFGLSSMLYATAFSARASV-YDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 164 ~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
+.+.+.|++++..=. .++..+... +..-.|.++++.+.+.++..+..|--.-++.+...|
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 345566776655433 333344433 456788888888888877767666655566666665
No 376
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=57.69 E-value=1.3e+02 Score=26.32 Aligned_cols=156 Identities=12% Similarity=-0.060 Sum_probs=82.9
Q ss_pred hhhhHHHHHhhh-C-CCChhhHHHHHHHHHhhh-ccC-ChHHH----H----HHHHHHHH-hccCCC--chH----HHh-
Q 040338 33 LIDDDYRVFCDI-G-PRYLFTYNTMINGGVRCL-CVG-NIKMA----L----HLHGLVKK-FYFVSD--ESI----AKS- 92 (385)
Q Consensus 33 ~~~~A~~~~~~~-~-~~~~~~~~~li~~~~~~~-~~~-~~~~a----~----~~~~~m~~-~g~~~~--~~~----~~~- 92 (385)
++.++..+...+ + +++...|..++..+.... ... ..+.. . +++..+.+ .|..+. ... ...
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence 888999999888 4 788888888888776533 112 11111 1 23333322 366554 222 222
Q ss_pred HHHHHH-hcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 040338 93 SIDMHV-KCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGF 171 (385)
Q Consensus 93 li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 171 (385)
++...| ..+-.+.|.+.|+.....+.. .. ...+...-..++....+.|..+.-..+++....
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~-------------~~-~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~--- 197 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDS-------------PE-SSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN--- 197 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT--------------TT-STS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcc-------------cc-cccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---
Confidence 244444 112256677777776543210 00 022344455566677777776554445544443
Q ss_pred CCCHhhHHHHHHHhcCccCccchhhHHHHHHHhC
Q 040338 172 GLSSMLYATAFSARASVYDLEWGPHLHSRVVHME 205 (385)
Q Consensus 172 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 205 (385)
.++..--..++.+++...+.+...++++.+...+
T Consensus 198 ~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 198 STSPEEKRRLLSALACSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTS
T ss_pred cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCc
Confidence 3456667788888888888888888888888754
No 377
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.87 E-value=1.2e+02 Score=25.48 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=13.6
Q ss_pred cccCChhhHHHHHHHHHhccc
Q 040338 296 SHSGPVTKGKHYFTAMAKFTY 316 (385)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~ 316 (385)
+..+++.+|+.+|+++.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344566777777777766544
No 378
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=55.70 E-value=89 Score=24.60 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=36.0
Q ss_pred HHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 166 LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 166 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
++..|++++..-. .++..+....+.-.|.++++.+.+.+..++..|-..-++.+.+.|
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 4556766655443 344444444566778888888888877766666555555555555
No 379
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.59 E-value=2.2e+02 Score=28.20 Aligned_cols=272 Identities=8% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHhccCCCccccc-----------cchHHHHHHhcCCC--CCCcchHHHHHHHHHhCCCchHHH
Q 040338 94 IDMHVKCGAVDYAESAFLRMLNPSLFCWK-----------FGIIRLLIMFQKMP--ERDLVSWNTMISILTRHGFGFETL 160 (385)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----------~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~ 160 (385)
..-..+.|++..+.++-.++...-...+. ...++...++.+-+ +.....-...+..+.+.+++...+
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHH
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHH
Q 040338 161 CTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVT 240 (385)
Q Consensus 161 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~ 240 (385)
+.+.. .+.+..--.....+....|+.++|......+-..|. ..+..++.+++.+.+.| ..+....-.=+.
T Consensus 120 ~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g----~lt~~d~w~R~~ 189 (644)
T PRK11619 120 AFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG----KQDPLAYLERIR 189 (644)
T ss_pred HhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC----CCCHHHHHHHHH
Q ss_pred HHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH-------HHHHHHHHhcccCChhhHHHHHHHHHh
Q 040338 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-------FFVSLLSGCSHSGPVTKGKHYFTAMAK 313 (385)
Q Consensus 241 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (385)
.....|+...|..+...+..........++..+.+..+........ .+..+.-.-....+.+.|...+.....
T Consensus 190 ~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~ 269 (644)
T PRK11619 190 LAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVR 269 (644)
T ss_pred HHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q ss_pred ccc------hhhHHHHHHHHHccCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 040338 314 FTY------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK-PTCVIWGALLGACCSHYNTKLAELVMRNL 375 (385)
Q Consensus 314 ~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 375 (385)
... ..+...+.......+..++|...++..... .+......-+..-.+.++++.+...+..|
T Consensus 270 ~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 270 AQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhc
No 380
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.56 E-value=75 Score=22.82 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 381
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=55.23 E-value=1.2e+02 Score=28.13 Aligned_cols=148 Identities=14% Similarity=0.037 Sum_probs=87.1
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHh--------hhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChh
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVR--------CLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVD 104 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~--------~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 104 (385)
++++|..+.+.++. ...|...+....+ ......+++-.++++.+.+.| .+| ....-|+.|-+.++++
T Consensus 29 d~~eav~y~k~~p~--~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~ 103 (480)
T TIGR01503 29 DLQDAVDYHKSIPA--HKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYD 103 (480)
T ss_pred CHHHHHHHHHhCCc--cccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHH
Confidence 89999998888763 2233333433221 112456888899999998876 234 4456789999999999
Q ss_pred HHHHHHHhccCCCc------cccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---H
Q 040338 105 YAESAFLRMLNPSL------FCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLS---S 175 (385)
Q Consensus 105 ~a~~~~~~m~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~ 175 (385)
+|..-+++-.+.|. ...+..++...++.+....|= -.++|.+ ++..+++-+...|+... .
T Consensus 104 ~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv----------QvRHGtp-DarlL~e~~~a~G~~a~EGG~ 172 (480)
T TIGR01503 104 EAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL----------QIRHGTP-DARLLAEIILAGGFTSFEGGG 172 (480)
T ss_pred HHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe----------eccCCCC-cHHHHHHHHHHcCCCccCCCc
Confidence 99999988765432 223345555555555543221 1345544 45666666666665432 3
Q ss_pred hhHHHHHHHhcCccCccchhhHHH
Q 040338 176 MLYATAFSARASVYDLEWGPHLHS 199 (385)
Q Consensus 176 ~t~~~ll~~~~~~~~~~~a~~~~~ 199 (385)
.+|+. -|++.=.+++++.-|+
T Consensus 173 ISYnl---PYsK~vpLe~si~~Wq 193 (480)
T TIGR01503 173 ISYNI---PYAKNVTLEKSLEDWQ 193 (480)
T ss_pred ceecc---ccCCCCCHHHHHHHHH
Confidence 34432 2344434445554444
No 382
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.72 E-value=43 Score=19.81 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=14.2
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040338 152 RHGFGFETLCTFIELWNHGFGLSSMLYATAF 182 (385)
Q Consensus 152 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 182 (385)
+.|-.+++..++++|.+.|+-.+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444444555555444444444444333
No 383
>PRK14700 recombination factor protein RarA; Provisional
Probab=54.57 E-value=1.5e+02 Score=25.91 Aligned_cols=97 Identities=3% Similarity=-0.170 Sum_probs=59.4
Q ss_pred cCCChHHHHHHHHHHHHcccchhhHHhhhhhHHHHHhhhC----CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Q 040338 6 SLKSLPIARKIHAQLISTCLISSIFLQLIDDDYRVFCDIG----PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKF 81 (385)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~ 81 (385)
..||...|....+.+...........-..+...++..+-. +..-..|+ +|++|.+..+-.+++-|+-.+..|.+.
T Consensus 77 a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd-~iSAf~KSiRGSDpDAAlYyLArml~~ 155 (300)
T PRK14700 77 NEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYE-QLSAFHKSVRGTDPDAAIFWLSVMLDN 155 (300)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHH-HHHHHHHHhhcCCccHHHHHHHHHHHc
Confidence 3577777887777765421111110012233333332211 22233455 789999888888999999999999999
Q ss_pred ccCCCchHHHhHHHHHHhcCCh
Q 040338 82 YFVSDESIAKSSIDMHVKCGAV 103 (385)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~ 103 (385)
|-.|....=..++-+.-.-|.-
T Consensus 156 GEDp~~IaRRLii~AsEDIGlA 177 (300)
T PRK14700 156 GVDPLVIARRMLCIASEDIGNA 177 (300)
T ss_pred CCCHHHHHHHHHHHHHhhccCC
Confidence 9877777666666666666643
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.48 E-value=57 Score=21.87 Aligned_cols=46 Identities=11% Similarity=-0.036 Sum_probs=35.3
Q ss_pred ccCChHHHHHHHHHHHHhccCCC--chHHHhHHHHHHhcCChhHHHHH
Q 040338 64 CVGNIKMALHLHGLVKKFYFVSD--ESIAKSSIDMHVKCGAVDYAESA 109 (385)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~ 109 (385)
..++-+.|+..|....+.-..|. -.++..|+.+|+..|+.++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888899999999887643322 24677889999999999988765
No 385
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=54.37 E-value=22 Score=31.28 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=45.5
Q ss_pred HHHHhcCCCCchHHHH------------HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHH
Q 040338 271 SAFSQAGVLEKPRFFF------------FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEA 336 (385)
Q Consensus 271 ~~~~~~g~~~~a~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A 336 (385)
.-|.++|.+++|++.| ++..-..+|.+...+..|..=-......+. ...|+--..+-...|...+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4577888888888888 566666777777666655554444433333 33344444444445555556
Q ss_pred HHHHHhCCC-CCC
Q 040338 337 KKLIDEMPS-KPT 348 (385)
Q Consensus 337 ~~~~~~m~~-~p~ 348 (385)
.+=++...+ .|+
T Consensus 185 KkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 185 KKDCETVLALEPK 197 (536)
T ss_pred HHhHHHHHhhCcc
Confidence 555555544 255
No 386
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=54.29 E-value=64 Score=22.49 Aligned_cols=27 Identities=4% Similarity=-0.279 Sum_probs=14.9
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHH
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGG 59 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~ 59 (385)
..++|+.+++.++..+..+|..++.++
T Consensus 52 ~~~qAr~Lld~l~~KG~~A~~~F~~~L 78 (94)
T cd08329 52 TPLQARELIDTVLVKGNAAAEVFRNCL 78 (94)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345555555555555555555555544
No 387
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=53.91 E-value=32 Score=20.12 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Q 040338 50 FTYNTMINGGVRCLCVGNIKMALHLHGLVKKF 81 (385)
Q Consensus 50 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~ 81 (385)
..|..|+.+|..|.+.|-+.+....++++.+.
T Consensus 11 P~Y~~Ll~Ayi~C~KVGAP~e~~~~L~e~~~~ 42 (45)
T PF03790_consen 11 PLYPRLLAAYIDCQKVGAPPEVVARLDEILAE 42 (45)
T ss_pred CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 46889999999999999999998888887654
No 388
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=53.85 E-value=1.5e+02 Score=25.88 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHhcCCCCchH
Q 040338 263 MISWMVLISAFSQAGVLEKPR 283 (385)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~ 283 (385)
...|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346777788888777766543
No 389
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.64 E-value=62 Score=23.98 Aligned_cols=43 Identities=7% Similarity=-0.017 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhccCCCc-hHHHhHHHHHHhcCChhHHHHHHH
Q 040338 69 KMALHLHGLVKKFYFVSDE-SIAKSSIDMHVKCGAVDYAESAFL 111 (385)
Q Consensus 69 ~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 111 (385)
++..++|..|.+.|+.... ..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567889999998875443 456777778888999999999985
No 390
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=53.62 E-value=20 Score=24.33 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=13.2
Q ss_pred CCCcchHHHHHHHHHhCCCchH
Q 040338 137 ERDLVSWNTMISILTRHGFGFE 158 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~ 158 (385)
.....+|....+++-..|+..-
T Consensus 58 ~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 58 TRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred hcCHHHHHHHHHHHHhcCchHH
Confidence 3344567777777766665443
No 391
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=53.15 E-value=51 Score=24.78 Aligned_cols=61 Identities=15% Similarity=-0.014 Sum_probs=41.1
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHH
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 97 (385)
+-.+|++.-..+.-+=+-|...++.+ .+.|-+.+...++++|.+.|+..+...|+-++.-.
T Consensus 94 Ddr~aR~~A~~lgL~V~GtlGvL~~a----k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 94 DDRDARNVAKSLGLKVTGTLGVLALA----KSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred ccHHHHHHHHHcCCeeeehhHHHHHH----HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 33444444444444434444545443 33689999999999999999999999988877643
No 392
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.04 E-value=12 Score=27.82 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=25.0
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 040338 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSA 184 (385)
Q Consensus 151 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 184 (385)
-..|.-.+|..+|++|.+.|-+||. ++.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4457778999999999999999985 4455544
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.60 E-value=22 Score=22.45 Aligned_cols=27 Identities=22% Similarity=-0.057 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
-.-.+|.++...|++++|.+++.++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344578999999999999999998865
No 394
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=52.59 E-value=73 Score=21.79 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcccchhhHHh-------hhhhHHHHHhhhCCCChhhHHHHHHHHHh
Q 040338 13 ARKIHAQLISTCLISSIFLQ-------LIDDDYRVFCDIGPRYLFTYNTMINGGVR 61 (385)
Q Consensus 13 a~~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 61 (385)
+..+.+.+++.|+-...-.. +-++|..+.+-++.++..+|.....++-.
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~ 71 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLH 71 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34466777776643333222 67777777777777777777777776543
No 395
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.77 E-value=1e+02 Score=26.97 Aligned_cols=44 Identities=5% Similarity=-0.183 Sum_probs=39.4
Q ss_pred HHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccC
Q 040338 72 LHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLN 115 (385)
Q Consensus 72 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 115 (385)
.++|+.|.+.++.|.-..+.-+--.+.+.-.+.+++.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 57888899899999999999999999999999999999998864
No 396
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=51.76 E-value=1.2e+02 Score=23.92 Aligned_cols=127 Identities=11% Similarity=0.115 Sum_probs=76.1
Q ss_pred CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHH
Q 040338 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHY 307 (385)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~ 307 (385)
++|+...+..+++.+.+.|++.....++.-=.-+|.......+-.+.. ....+ ...|..+
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~------------------~Ql~lDM 84 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPA------------------YQLGLDM 84 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHH------------------HHHHHHH
Confidence 445555667777777777777666666654333444443333322221 11111 2223344
Q ss_pred HHHHHhccchhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 040338 308 FTAMAKFTYTCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDV 380 (385)
Q Consensus 308 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 380 (385)
+.++. ..+..+++.+...|++-+|.++.+.... .+......++.+-.+.+|...-..+++-+.+.+.
T Consensus 85 LkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 85 LKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred HHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 44432 2566778889999999999999988643 2333446688888888888777777776666543
No 397
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=51.75 E-value=80 Score=25.62 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccccCC
Q 040338 352 WGALLGACCSHYNTKLAELVMRNLLQLDVKVF 383 (385)
Q Consensus 352 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 383 (385)
|..+++.-.+....+++.++.++|.++=..||
T Consensus 142 W~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PP 173 (199)
T PF04090_consen 142 WILLIQEEDRESELDSYQQLIERIDELVLSPP 173 (199)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 33444444344455667777777777655554
No 398
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=51.46 E-value=96 Score=22.85 Aligned_cols=67 Identities=15% Similarity=0.037 Sum_probs=36.3
Q ss_pred ChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc--hh----hHHHHHHHHHccCCHHH
Q 040338 262 NMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TC----YFVCMVDLLGLSGLLGE 335 (385)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~li~~~~~~g~~~~ 335 (385)
|..++..|-.++...|++++++.- .+.|...|++=-+... .. ..-+-..++-..|+.++
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~s---------------A~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~e 118 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQS---------------ADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEE 118 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHH---------------HHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHH---------------HHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHH
Confidence 445566667777777777766433 2445555554333222 22 22223445667889999
Q ss_pred HHHHHHhC
Q 040338 336 AKKLIDEM 343 (385)
Q Consensus 336 A~~~~~~m 343 (385)
|.+-|+..
T Consensus 119 A~~~fr~a 126 (144)
T PF12968_consen 119 ALKEFRMA 126 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888643
No 399
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.41 E-value=1.5e+02 Score=24.95 Aligned_cols=27 Identities=0% Similarity=-0.125 Sum_probs=18.4
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCH
Q 040338 149 ILTRHGFGFETLCTFIELWNHGFGLSS 175 (385)
Q Consensus 149 ~~~~~~~~~~a~~~~~~m~~~g~~p~~ 175 (385)
.-+..+++.+|+++|++.-...+.-+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 345667888888888888766444333
No 400
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=50.99 E-value=31 Score=18.48 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=12.6
Q ss_pred ChHHHHHHHHHHHHcccchh
Q 040338 9 SLPIARKIHAQLISTCLISS 28 (385)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~ 28 (385)
.++.|+.++++.+.....+.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k 21 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVK 21 (32)
T ss_pred hHHHHHHHHHHHHHhCCCch
Confidence 35677777777777543333
No 401
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=49.80 E-value=55 Score=26.03 Aligned_cols=36 Identities=17% Similarity=-0.060 Sum_probs=16.6
Q ss_pred CCc-chHHHHHHHHHhcCC-----------hHHHHHHHHHHHhccccC
Q 040338 347 PTC-VIWGALLGACCSHYN-----------TKLAELVMRNLLQLDVKV 382 (385)
Q Consensus 347 p~~-~~~~~li~~~~~~g~-----------~~~a~~~~~~~~~~~~~~ 382 (385)
|+. .++..+.++|...+. +++|...|++..+.+|.+
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 443 355555555544332 345555555555555543
No 402
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=49.76 E-value=26 Score=22.44 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=34.7
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcC
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARAS 187 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 187 (385)
.|....++-++..+++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 46667788888888888888888888888888875 345555555555443
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.76 E-value=43 Score=30.58 Aligned_cols=57 Identities=7% Similarity=-0.007 Sum_probs=39.9
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc----------hhhHHHHHHHHHccCCHHHHHHHHHhC
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY----------TCYFVCMVDLLGLSGLLGEAKKLIDEM 343 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (385)
+...++...+-.||+..|.++++.+.-... ..++--+.-+|...+|+.+|.+.|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777888888877776533211 455556777888888888888888655
No 404
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.68 E-value=93 Score=23.76 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=39.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCc
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDL 191 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 191 (385)
..-..++..+.+.+++-.|.++|+++.+.+...+..|.-..++.+...|-+
T Consensus 21 ~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 21 PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 345567888888888899999999999988777777666666666666643
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.98 E-value=63 Score=30.89 Aligned_cols=27 Identities=7% Similarity=-0.080 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 142 SWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 142 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
++-.+-+++....+.++|++.|+...+
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 344444455555555555555555444
No 406
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=47.75 E-value=15 Score=33.66 Aligned_cols=136 Identities=13% Similarity=0.013 Sum_probs=68.0
Q ss_pred ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCC-----C-----ccccccchHHHHHHhcCCCCCC------------
Q 040338 82 YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNP-----S-----LFCWKFGIIRLLIMFQKMPERD------------ 139 (385)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-----~~~~~~~~~~a~~~~~~~~~~~------------ 139 (385)
|+.||...|.+=..+--+..+...|...++.+.-. + ..-..|....-+++|+.+.--|
T Consensus 410 ~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~ 489 (650)
T KOG4334|consen 410 GVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAI 489 (650)
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHhcchhhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcCC
Confidence 34455555554333333344566677766665321 0 0111145566678888875322
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCc------cCccchhhHHHHHHHhCCCCchHHH
Q 040338 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV------YDLEWGPHLHSRVVHMEPSLDVFVG 213 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~ 213 (385)
...|++|..++.++-.+.+. .+=.+| .++..--+-.+.+|.+. .+...+.++-.+-+-.-+.|...+|
T Consensus 490 psPy~iL~~cl~Rn~g~~d~-~ik~E~-----i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~tw 563 (650)
T KOG4334|consen 490 PSPYNILRDCLSRNLGWNDL-VIKKEM-----IGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTW 563 (650)
T ss_pred CCHHHHHHHHHHhhcCCcce-eeeeec-----cCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhH
Confidence 33588888888887666421 122233 33332223333333322 2334455555444444456777777
Q ss_pred HHHHHHHHhc
Q 040338 214 SGLIDMYLKC 223 (385)
Q Consensus 214 ~~li~~~~~~ 223 (385)
.+|++.|++.
T Consensus 564 GSlLriYGr~ 573 (650)
T KOG4334|consen 564 GSLLRIYGRL 573 (650)
T ss_pred HHHHHHhhhh
Confidence 6666666654
No 407
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=47.35 E-value=1e+02 Score=21.91 Aligned_cols=76 Identities=13% Similarity=-0.045 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 040338 301 VTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQL 378 (385)
Q Consensus 301 ~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 378 (385)
.++|..|-+.+...+. ..+--+-+.++...|++++|..+.+... -||...|-+|-. .+.|..+++...+-+|...
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4555555555555553 2222334567889999999999998885 589888877653 4566666666666555544
Q ss_pred c
Q 040338 379 D 379 (385)
Q Consensus 379 ~ 379 (385)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 3
No 408
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.20 E-value=1.6e+02 Score=28.93 Aligned_cols=95 Identities=16% Similarity=0.058 Sum_probs=59.5
Q ss_pred hHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchH--HHHHHHH-HHH
Q 040338 92 SSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFE--TLCTFIE-LWN 168 (385)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--a~~~~~~-m~~ 168 (385)
+|+.+|...|++..+.++++.....+- -.+.=...||..|+.+.+.|.++- +.+-..+ +..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~----------------~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~ 96 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNK----------------GDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ 96 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCc----------------CCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 799999999999999999988765432 001224568888999999997642 2211111 222
Q ss_pred CCCCCCHhhHHHHHHHhcCccCccchhhHHHHHH
Q 040338 169 HGFGLSSMLYATAFSARASVYDLEWGPHLHSRVV 202 (385)
Q Consensus 169 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 202 (385)
..+.-|..||..++.+-...-+-....-++.+++
T Consensus 97 a~ln~d~~t~all~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 97 ARLNGDSLTYALLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hhcCCcchHHHHHHHhhcChHhHHhccHHHHHHH
Confidence 3366788888888876554333333333444333
No 409
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.58 E-value=79 Score=24.89 Aligned_cols=54 Identities=4% Similarity=-0.205 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccc
Q 040338 140 LVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEW 193 (385)
Q Consensus 140 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 193 (385)
+..-..++..+...++.-.|.++++.+.+.+..++..|..-.|..+.+.|-+..
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 334445666776677788999999999999888888777667777777776544
No 410
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.29 E-value=3e+02 Score=27.04 Aligned_cols=326 Identities=13% Similarity=0.069 Sum_probs=155.7
Q ss_pred hhhhHHHHHhhhC-------CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhcc---------CCCchHHHhHHHH
Q 040338 33 LIDDDYRVFCDIG-------PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYF---------VSDESIAKSSIDM 96 (385)
Q Consensus 33 ~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~---------~~~~~~~~~li~~ 96 (385)
+...|.+.++.+. .|-...+-.++.+... ...+..+++.+..+.+..... .|-..+|..+++.
T Consensus 154 d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~-l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 154 DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLH-LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 4444555555443 2233444455555443 235667788888887755332 3356677788877
Q ss_pred HHh--cCChhHHHHHHHhcc-------CCC-ccccccc--hHHH-----------HHHhcCCCCCCcchHHHHHHHH--H
Q 040338 97 HVK--CGAVDYAESAFLRML-------NPS-LFCWKFG--IIRL-----------LIMFQKMPERDLVSWNTMISIL--T 151 (385)
Q Consensus 97 ~~~--~g~~~~a~~~~~~m~-------~~~-~~~~~~~--~~~a-----------~~~~~~~~~~~~~~~~~li~~~--~ 151 (385)
++. .|+++.+...++++. +.. ...|.++ +.-- .-+|..+++.+....--++++. +
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~ 312 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNL 312 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHh
Confidence 665 577767766665552 221 1222211 1100 3456666666655555555543 3
Q ss_pred hCCCchHHHHHHH-------HHH-HCCCCCCH--------hhHHHHH---------HHhcCccCccchhhHHHHHHHhCC
Q 040338 152 RHGFGFETLCTFI-------ELW-NHGFGLSS--------MLYATAF---------SARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 152 ~~~~~~~a~~~~~-------~m~-~~g~~p~~--------~t~~~ll---------~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
..+..++|.++++ +.. .....|.. ..+...+ -...-.+++..+.+..+.+.+..-
T Consensus 313 ~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~ 392 (608)
T PF10345_consen 313 YKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQ 392 (608)
T ss_pred hccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 3444445554444 444 11111111 1111111 112345778888888888876532
Q ss_pred C-Cch--HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHH--------hccc----CChhhHHHH--
Q 040338 207 S-LDV--FVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFE--------LMSR----RNMISWMVL-- 269 (385)
Q Consensus 207 ~-~~~--~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~----~~~~~~~~l-- 269 (385)
. |+. ..+.. .++....-.+...|+++.|+..|. .... ++...+..|
T Consensus 393 ~~~~~~~~~~~~-----------------~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl 455 (608)
T PF10345_consen 393 RSPSKLYESLYP-----------------LLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNL 455 (608)
T ss_pred cCccchhhhhhH-----------------HHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHH
Confidence 1 111 11111 111111222334589999999997 2222 133333332
Q ss_pred HHHHHhcCCCC--c--hHHHH-----------------HHHHHHHHhcccCC--hhhHHHHHHHHHh-----ccc----h
Q 040338 270 ISAFSQAGVLE--K--PRFFF-----------------FFVSLLSGCSHSGP--VTKGKHYFTAMAK-----FTY----T 317 (385)
Q Consensus 270 i~~~~~~g~~~--~--a~~~~-----------------~~~~l~~~~~~~~~--~~~a~~~~~~~~~-----~~~----~ 317 (385)
+..+...+... + .-+++ .+..++.++...-. ..++...+....+ .+. .
T Consensus 456 ~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~ 535 (608)
T PF10345_consen 456 AIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLA 535 (608)
T ss_pred HHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHH
Confidence 22222222222 2 44455 33333444432221 1233333332222 222 3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHhCCC----CCC--cchH-----HHHHHHHHhcCChHHHHHHHHHHHh
Q 040338 318 CYFVCMVDLLGLSGLLGEAKKLIDEMPS----KPT--CVIW-----GALLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~--~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
..++.+...+. .|+..+..+....... .|| ...| ..+...|...|+.++|....++...
T Consensus 536 ~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 536 ILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 33343333344 7887776665544221 233 3355 3345558888999999999887654
No 411
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.68 E-value=1.2e+02 Score=21.80 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=46.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
....++|..+.+.+...+. ....+--+-+..+...|++++|+.. -. . ...||...|-
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~--~~-~-------------------~~~pdL~p~~ 75 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL--PQ-C-------------------HCYPDLEPWA 75 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH--HT-T-------------------S--GGGHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh--cc-c-------------------CCCccHHHHH
Confidence 5677888888888887653 2233333334556677888888222 11 1 1147777776
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCC
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHG 170 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g 170 (385)
+|-. .+.|--+++...+.++-..|
T Consensus 76 AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 76 ALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHH--HhhccHHHHHHHHHHHHhCC
Confidence 6543 46777778888877775543
No 412
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=43.61 E-value=3e+02 Score=26.23 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=55.5
Q ss_pred chhhHHHHHHHHHHcCCChhHHHHHHHhccc---CChhhHHHHHHHHHhcCCCCchHHHH------------------HH
Q 040338 230 SSIQIGKALVTMYAEGGSTQKADLAFELMSR---RNMISWMVLISAFSQAGVLEKPRFFF------------------FF 288 (385)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~------------------~~ 288 (385)
.+...|-.++..|... ..++-..+|+++.+ .|++.-..|..-|-+ ++...+..+| .|
T Consensus 97 e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evW 174 (711)
T COG1747 97 ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVW 174 (711)
T ss_pred chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHH
Confidence 4445566666666666 45666666665554 234444444444444 5555555554 22
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHHhCCC
Q 040338 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLIDEMPS 345 (385)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (385)
..+...- ..+.+.-.++...+..... ...+.-+-.-|....++++|++++..+.+
T Consensus 175 eKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 175 EKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 2222111 2233333333333333222 33344444556666677777777766655
No 413
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=43.19 E-value=29 Score=23.94 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=11.8
Q ss_pred CCCcchHHHHHHHHHhCCC
Q 040338 137 ERDLVSWNTMISILTRHGF 155 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~ 155 (385)
.....+|..+..++...+.
T Consensus 62 ~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 62 KRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HhChhHHHHHHHHHHhcCh
Confidence 3444677777777765554
No 414
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.03 E-value=72 Score=22.95 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=25.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc
Q 040338 146 MISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192 (385)
Q Consensus 146 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 192 (385)
++..+...+.+-.|.++++.+.+.+..++..|..-.++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555566666666666555555555545555555555443
No 415
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.02 E-value=70 Score=23.03 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=32.2
Q ss_pred HHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCC
Q 040338 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNG 227 (385)
Q Consensus 181 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 227 (385)
++..+...+..-.|.++++.+.+.+..++..|-...++.+.+.|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44445555566677888888887777777777777777777777433
No 416
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=42.50 E-value=1.4e+02 Score=22.17 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHH-HHHHHHHhcCChHHHHHHHHHHH
Q 040338 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG-ALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
..+..++..++.-.|..++|.++++...=-++....| .++..|.+..+.++..++-++..
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4455667777777888888888887765333333322 47788888877777777666543
No 417
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.07 E-value=1.4e+02 Score=22.12 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhccc----hhhHHHHHHHHHccCCHHHHHHHHH
Q 040338 302 TKGKHYFTAMAKFTY----TCYFVCMVDLLGLSGLLGEAKKLID 341 (385)
Q Consensus 302 ~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 341 (385)
+....+|..|...+. ...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 335678888888887 7777778888888899999988886
No 418
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.88 E-value=4e+02 Score=27.21 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHccCC
Q 040338 317 TCYFVCMVDLLGLSGL 332 (385)
Q Consensus 317 ~~~~~~li~~~~~~g~ 332 (385)
+..+|.++..|++..+
T Consensus 628 ~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 628 PAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHHHHhhcCCc
Confidence 6667777777665544
No 419
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.81 E-value=64 Score=23.47 Aligned_cols=44 Identities=7% Similarity=0.071 Sum_probs=21.7
Q ss_pred HHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 040338 181 AFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCG 224 (385)
Q Consensus 181 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 224 (385)
++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444445556666666666555555554444444444444
No 420
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.75 E-value=1e+02 Score=25.41 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=22.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHhCCCCCCcch
Q 040338 321 VCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351 (385)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 351 (385)
-.+.....+.|+.++|.+.|..+...++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 3455666778888888888888877655544
No 421
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.35 E-value=50 Score=16.64 Aligned_cols=17 Identities=0% Similarity=0.065 Sum_probs=9.4
Q ss_pred ChhhHHHHHHHHHhccc
Q 040338 300 PVTKGKHYFTAMAKFTY 316 (385)
Q Consensus 300 ~~~~a~~~~~~~~~~~~ 316 (385)
+.+.+..+|+++....+
T Consensus 2 ~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 2 DIERARKIYERALEKFP 18 (33)
T ss_pred cHHHHHHHHHHHHHHCC
Confidence 45555666666555444
No 422
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=40.62 E-value=1.7e+02 Score=25.22 Aligned_cols=90 Identities=10% Similarity=-0.109 Sum_probs=56.0
Q ss_pred HhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 040338 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELWNHG 170 (385)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 170 (385)
..=|.++++.+++.+++...-+.-+ .-.+--..+...-|-.|.+.+.+..+.++-..-...-
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq------------------~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p 148 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQ------------------VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDP 148 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhc------------------CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCc
Confidence 3347999999999999876533211 1112223344445667889999998888877776542
Q ss_pred CCCCHhhHHHHH-----HHhcCccCccchhhHH
Q 040338 171 FGLSSMLYATAF-----SARASVYDLEWGPHLH 198 (385)
Q Consensus 171 ~~p~~~t~~~ll-----~~~~~~~~~~~a~~~~ 198 (385)
-.-+...|..++ +.+.-.|.+++|+++.
T Consensus 149 ~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 149 SNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred ccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 111223355544 4455678999998776
No 423
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.54 E-value=1.9e+02 Score=23.19 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=54.2
Q ss_pred ccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc-CChhhHHHH
Q 040338 191 LEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR-RNMISWMVL 269 (385)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~l 269 (385)
++.|+.+++.+.+.-..|. +....|+-+.+ ...+-.|.+.|.+++|.++++...+ ++......-
T Consensus 85 LESAl~v~~~I~~E~~~~~--~lhe~i~~lik-------------~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~k 149 (200)
T cd00280 85 LESALMVLESIEKEFSLPE--TLHEEIRKLIK-------------EQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMK 149 (200)
T ss_pred HHHHHHHHHHHHHhcCCcH--HHHHHHHHHHH-------------HHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHH
Confidence 5678888888877644331 11112222211 4556788999999999999998865 566555666
Q ss_pred HHHHHhcCC-CCchHHHHHHHHHH
Q 040338 270 ISAFSQAGV-LEKPRFFFFFVSLL 292 (385)
Q Consensus 270 i~~~~~~g~-~~~a~~~~~~~~l~ 292 (385)
+....+..+ +...++-|+|+.++
T Consensus 150 L~~II~~Kd~~h~~lqnFSy~~~~ 173 (200)
T cd00280 150 LLMIIREKDPAHPVLQNFSYSHFM 173 (200)
T ss_pred HHHHHHccccccHHHHhccHHHHH
Confidence 666666554 44445555666654
No 424
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.21 E-value=2.1e+02 Score=26.88 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=63.4
Q ss_pred hcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHH
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAEL 370 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~ 370 (385)
..+.|+++.+.+.+....+.-. ..+...++....+.|++++|..+-+.|... .+..........-...|-++++.-
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 4567889988888776554333 677788899999999999999998888764 233233333344455678899999
Q ss_pred HHHHHHhccccC
Q 040338 371 VMRNLLQLDVKV 382 (385)
Q Consensus 371 ~~~~~~~~~~~~ 382 (385)
.|+++...+++.
T Consensus 413 ~wk~~~~~~~~~ 424 (831)
T PRK15180 413 YWKRVLLLNPET 424 (831)
T ss_pred HHHHHhccCChh
Confidence 999988776653
No 425
>PRK09687 putative lyase; Provisional
Probab=39.93 E-value=2.5e+02 Score=24.31 Aligned_cols=39 Identities=10% Similarity=-0.019 Sum_probs=25.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHhCCC-CCCcchHHHHHHHHH
Q 040338 321 VCMVDLLGLSGLLGEAKKLIDEMPS-KPTCVIWGALLGACC 360 (385)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~li~~~~ 360 (385)
...+.++...|.. +|...+..+.. .||...-...+.+|.
T Consensus 239 ~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 239 DLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 3567777777774 67777777765 466666665665554
No 426
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=39.66 E-value=1.1e+02 Score=20.33 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=10.9
Q ss_pred hHHHHHHhcCChhHHHHHHH
Q 040338 92 SSIDMHVKCGAVDYAESAFL 111 (385)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~ 111 (385)
..+...+..|+.+-+..+++
T Consensus 28 ~~l~~A~~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 28 TALHYAAENGNLEIVKLLLE 47 (89)
T ss_dssp BHHHHHHHTTTHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHH
Confidence 34555556666555555554
No 427
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.47 E-value=81 Score=26.42 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=40.8
Q ss_pred HHHHHhhhCCCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHH
Q 040338 37 DYRVFCDIGPRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMH 97 (385)
Q Consensus 37 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 97 (385)
+..+|.-...|.+.....|+..+.. +++++|.+.+.++-+.|+.|... .+++.+.+
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~~----~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACLK----RNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHHh----ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 3444544457888888888887544 99999999999999999886543 45555554
No 428
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.85 E-value=53 Score=24.73 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=11.5
Q ss_pred HHHhcCChHHHHHHHHHHHhcccc
Q 040338 358 ACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 358 ~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
++.+.+++++++++.+.+++..|+
T Consensus 80 g~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHhhCCC
Confidence 444444555555555444444443
No 429
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.41 E-value=71 Score=27.79 Aligned_cols=28 Identities=14% Similarity=-0.098 Sum_probs=21.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 141 VSWNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
..-...+..+...|++.+|++++.+..+
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3345567777889999999999888765
No 430
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=38.25 E-value=31 Score=21.96 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=18.1
Q ss_pred CCCchHHHHHHHHHHHCC-CCCCHh
Q 040338 153 HGFGFETLCTFIELWNHG-FGLSSM 176 (385)
Q Consensus 153 ~~~~~~a~~~~~~m~~~g-~~p~~~ 176 (385)
.-+++.|+..|.+++..| ++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 347889999999998876 555543
No 431
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=38.10 E-value=3.5e+02 Score=25.49 Aligned_cols=53 Identities=17% Similarity=0.064 Sum_probs=36.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL 118 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 118 (385)
.|.++.+.+.+....+. +.....+...+++..-+.|++++|..+-+-|....+
T Consensus 336 lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 336 LGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred hhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 67788887777666543 334556677777777777888888877776655443
No 432
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=37.95 E-value=4.4e+02 Score=26.61 Aligned_cols=95 Identities=6% Similarity=-0.135 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHHHHcccch--hhHHhhhhhHHHHHhhhC----CCChhhHHHHHHHHHhhhccCChHHHHHHHHHHHH
Q 040338 7 LKSLPIARKIHAQLISTCLIS--SIFLQLIDDDYRVFCDIG----PRYLFTYNTMINGGVRCLCVGNIKMALHLHGLVKK 80 (385)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~ 80 (385)
.||...+..+.+.+....... ....-+.+.+.+.+.... ......| -.|+++.+..+.++++.|+..+..|.+
T Consensus 208 ~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hy-d~Isa~~ksirgsD~daAl~~la~ml~ 286 (725)
T PRK13341 208 NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHF-DTISAFIKSLRGSDPDAALYWLARMVE 286 (725)
T ss_pred CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 588888888888776432110 010013333444333211 1112344 366677766667999999999999999
Q ss_pred hccCCCchHHHhHHHHHHhcCC
Q 040338 81 FYFVSDESIAKSSIDMHVKCGA 102 (385)
Q Consensus 81 ~g~~~~~~~~~~li~~~~~~g~ 102 (385)
.|..|....-..++.+.-.-|.
T Consensus 287 ~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 287 AGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred cCCCHHHHHHHHHHHHHhccCC
Confidence 9987755544444444333453
No 433
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.81 E-value=2.8e+02 Score=24.21 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHHHh-ccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHH
Q 040338 67 NIKMALHLHGLVKKF-YFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNT 145 (385)
Q Consensus 67 ~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (385)
++++.-+-.++..+. |-.--...+..+...|++.++.+.+.+...+..+..+. ...+-|+....+
T Consensus 94 ki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s--------------tg~KiDv~l~ki 159 (412)
T COG5187 94 KIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS--------------TGLKIDVFLCKI 159 (412)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--------------cccchhhHHHHH
Confidence 344443334444333 33334567788889999999999998887765433220 000334433322
Q ss_pred HH-HHHHhCCCchHHHHHHHHHHHCCCCCCH----hhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHH
Q 040338 146 MI-SILTRHGFGFETLCTFIELWNHGFGLSS----MLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMY 220 (385)
Q Consensus 146 li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 220 (385)
-+ -.|....-.++-++..+.|.+.|-.-+. .+|--+. +....++.+|-.++.+....--......|.......
T Consensus 160 Rlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa 237 (412)
T COG5187 160 RLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRAVRYA 237 (412)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 22 2333333466777888888888755432 2332222 223356777777777776543333444554444443
Q ss_pred HhcC
Q 040338 221 LKCG 224 (385)
Q Consensus 221 ~~~g 224 (385)
.-+|
T Consensus 238 ~~~G 241 (412)
T COG5187 238 IFCG 241 (412)
T ss_pred HHhh
Confidence 3333
No 434
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.60 E-value=1.2e+02 Score=29.25 Aligned_cols=86 Identities=21% Similarity=0.099 Sum_probs=60.2
Q ss_pred cCChhhHHHHHHHHHhccc---hhhHHHHHHHHHccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHH
Q 040338 298 SGPVTKGKHYFTAMAKFTY---TCYFVCMVDLLGLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVM 372 (385)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~ 372 (385)
.|+...|...+.......+ ....-.|.+.+.+.|-..+|-.++.+...- ....++-.+.++|....+.+.|++-|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 4677777777766655544 333344566667777777888877665542 45567777888888888999999999
Q ss_pred HHHHhccccCC
Q 040338 373 RNLLQLDVKVF 383 (385)
Q Consensus 373 ~~~~~~~~~~~ 383 (385)
++..+..+++.
T Consensus 700 ~~a~~~~~~~~ 710 (886)
T KOG4507|consen 700 RQALKLTTKCP 710 (886)
T ss_pred HHHHhcCCCCh
Confidence 98888777654
No 435
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.44 E-value=74 Score=21.98 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=13.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 040338 355 LLGACCSHYNTKLAELVMRNLLQ 377 (385)
Q Consensus 355 li~~~~~~g~~~~a~~~~~~~~~ 377 (385)
+.......|++++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556666666666666554
No 436
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.33 E-value=3.2e+02 Score=24.75 Aligned_cols=67 Identities=12% Similarity=-0.140 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh-cCChhHHHHHHHhcc
Q 040338 48 YLFTYNTMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK-CGAVDYAESAFLRML 114 (385)
Q Consensus 48 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~ 114 (385)
|..-|-++.+.....+++|.+..|+++.+-+......-|+......|+.|+- .++++--+++.+...
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 5666777777777677799999999999999987655577777778888865 567777777777654
No 437
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.26 E-value=3.4e+02 Score=25.94 Aligned_cols=89 Identities=16% Similarity=0.061 Sum_probs=56.7
Q ss_pred HHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccc--hHHHHHHhcCCCCCCcchHHHHHHHHHhCC
Q 040338 77 LVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFG--IIRLLIMFQKMPERDLVSWNTMISILTRHG 154 (385)
Q Consensus 77 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 154 (385)
.+.+.|+..+......++... .|+...|..++++....+. |. .+....++ ...+....-.++.++. .+
T Consensus 190 il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~----~~It~~~V~~~l---g~~~~~~i~~ll~al~-~~ 259 (509)
T PRK14958 190 LLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN----GKVLIADVKTML---GTIEPLLLFDILEALA-AK 259 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC----CCcCHHHHHHHH---CCCCHHHHHHHHHHHH-cC
Confidence 344557777777666665543 5899999999987643221 11 11122222 2344445555666655 48
Q ss_pred CchHHHHHHHHHHHCCCCCCH
Q 040338 155 FGFETLCTFIELWNHGFGLSS 175 (385)
Q Consensus 155 ~~~~a~~~~~~m~~~g~~p~~ 175 (385)
+.+.++.++++|...|..|..
T Consensus 260 d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 260 AGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CHHHHHHHHHHHHHcCCCHHH
Confidence 899999999999999988753
No 438
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.98 E-value=64 Score=23.48 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCcc
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLE 192 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 192 (385)
..++..+...+.+-.|.++++.|.+.|...+..|.---+..+.+.|-+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 4567777788778899999999999888888877666667777666543
No 439
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=36.87 E-value=4.7e+02 Score=26.63 Aligned_cols=99 Identities=12% Similarity=-0.025 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHH-hccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHH
Q 040338 68 IKMALHLHGLVKK-FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTM 146 (385)
Q Consensus 68 ~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 146 (385)
.++..+.++.+.+ .|+..+......+.+.. .|++.+|+.++++....+. +.+.. ..+..-+...|......+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~----~~It~-~~V~~~LG~~d~~~i~~l 252 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSA----NEVTE-TAVSGMLGALDQTYMVRL 252 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcc----CCcCH-HHHHHHhCCCCHHHHHHH
Confidence 3455555555543 46666666655554433 6899999999887543221 11110 111111223455556666
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 040338 147 ISILTRHGFGFETLCTFIELWNHGFGLS 174 (385)
Q Consensus 147 i~~~~~~~~~~~a~~~~~~m~~~g~~p~ 174 (385)
+..+. .++..+++.+++++...|+.+.
T Consensus 253 l~aL~-~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 253 LDALA-AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 66554 5889999999999999887664
No 440
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=36.18 E-value=1.4e+02 Score=20.19 Aligned_cols=47 Identities=9% Similarity=-0.071 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcccchhhHHh-------hhhhHHHHHhhhCCCChhhHHHHHHHH
Q 040338 13 ARKIHAQLISTCLISSIFLQ-------LIDDDYRVFCDIGPRYLFTYNTMINGG 59 (385)
Q Consensus 13 a~~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~li~~~ 59 (385)
...+.+.+.+.++-...-.. +-++|+++++.++..+..++..+..++
T Consensus 17 v~~ilD~L~~~~Vit~e~~~~I~a~~T~~~kar~Lld~l~~kG~~A~~~F~~~L 70 (82)
T cd08330 17 VDPILDKLHGKKVITQEQYSEVRAEKTNQEKMRKLFSFVRSWGASCKDIFYQIL 70 (82)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34455555555533322222 566666666666666666666666654
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.84 E-value=3.7e+02 Score=27.58 Aligned_cols=130 Identities=15% Similarity=0.054 Sum_probs=88.8
Q ss_pred HHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH----HHHHHHHHhcccCChhhHHHHHHHHHhccc
Q 040338 241 MYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF----FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY 316 (385)
Q Consensus 241 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (385)
....+|+++.|++.-.++- |..+|..|...-.++|+.+-|+..| .|..+-=.|.-.|+.++..++.+.....+.
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D 729 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRND 729 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhh
Confidence 3457789999988776664 4568889999999999999888888 677777778889999888877776655443
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
.......-.-.|+.++=.++++.--..| ..| +. -..+|.-++|.++.++..+.++.
T Consensus 730 ---~~~~~qnalYl~dv~ervkIl~n~g~~~--lay---lt-a~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 730 ---ATGQFQNALYLGDVKERVKILENGGQLP--LAY---LT-AAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred ---hHHHHHHHHHhccHHHHHHHHHhcCccc--HHH---HH-HhhcCcHHHHHHHHHhhccccCC
Confidence 1111222233577888788877665422 112 12 23467778888888888764443
No 442
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.79 E-value=2e+02 Score=25.06 Aligned_cols=97 Identities=8% Similarity=-0.018 Sum_probs=44.9
Q ss_pred HHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHH-HHHHHHHHhccc-------CChhhHHHHHHH
Q 040338 239 VTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFF-FFVSLLSGCSHS-------GPVTKGKHYFTA 310 (385)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~~~l~~~~~~~-------~~~~~a~~~~~~ 310 (385)
+..+.+..++....+.++.+. .+..-...+..+...|++..|++++ ....++..+... .++++.....+.
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~ 182 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEE 182 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHH
Confidence 333344444444444444442 2333344556666777777777776 222222322221 111222222222
Q ss_pred --------HHhccchhhHHHHHHHHHccCCHHHHH
Q 040338 311 --------MAKFTYTCYFVCMVDLLGLSGLLGEAK 337 (385)
Q Consensus 311 --------~~~~~~~~~~~~li~~~~~~g~~~~A~ 337 (385)
+.....+..|..++.+|.-.|+...+.
T Consensus 183 ~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 183 QLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 222222667777777777777655544
No 443
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.79 E-value=4e+02 Score=26.70 Aligned_cols=99 Identities=11% Similarity=-0.032 Sum_probs=60.5
Q ss_pred HHHHHHHHHHH-HhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHH
Q 040338 69 KMALHLHGLVK-KFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147 (385)
Q Consensus 69 ~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 147 (385)
++....+.... +.|+..+......+++.. .|++..++.+++++...+.- .=..+....++.. .+......|+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g--~It~e~V~~lLG~---~d~~~If~Ll 253 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSG--KVAENDVRQMIGA---VDKQYLYELL 253 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCC--CcCHHHHHHHHcc---cCHHHHHHHH
Confidence 44444454443 447777777777666554 59999999999876542210 0011222222222 3334455566
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 040338 148 SILTRHGFGFETLCTFIELWNHGFGLSS 175 (385)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 175 (385)
.++.. ++...++.++++|...|+.+..
T Consensus 254 dAL~~-~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 254 TGIIN-QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCHHH
Confidence 66654 7899999999999998887653
No 444
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.57 E-value=3.9e+02 Score=25.28 Aligned_cols=137 Identities=15% Similarity=0.061 Sum_probs=79.1
Q ss_pred HHHHHHHcCCChhHHHHHHHhccc-----CC--hh-----hHHHHHHH-HHhcCCCCchHHHH---------------HH
Q 040338 237 ALVTMYAEGGSTQKADLAFELMSR-----RN--MI-----SWMVLISA-FSQAGVLEKPRFFF---------------FF 288 (385)
Q Consensus 237 ~li~~~~~~g~~~~A~~~~~~m~~-----~~--~~-----~~~~li~~-~~~~g~~~~a~~~~---------------~~ 288 (385)
.++-.-.-.|+..+|++-...|.+ |. .. -...++.- ++..|.++.|..-| .-
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333344457899999999988875 32 11 11223333 34567778887766 34
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhccc---------hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcchHH------
Q 040338 289 VSLLSGCSHSGPVTKGKHYFTAMAKFTY---------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVIWG------ 353 (385)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~------ 353 (385)
..+...|.+.|+.+.-.++.+.+...+. ...+-...-.....+++.||...+++-.+..|..-++
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~ 487 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACS 487 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 4566677788887777777777655433 1112112222346889999999988776633332222
Q ss_pred --HHHHHHHhcCChHHHHHHHH
Q 040338 354 --ALLGACCSHYNTKLAELVMR 373 (385)
Q Consensus 354 --~li~~~~~~g~~~~a~~~~~ 373 (385)
.|-......|+..++.+...
T Consensus 488 LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHHhcchHHHHhccc
Confidence 22334455666666555443
No 445
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.48 E-value=4.2e+02 Score=25.66 Aligned_cols=150 Identities=5% Similarity=-0.101 Sum_probs=88.4
Q ss_pred hhhHHHHHhhhCC-CChhhHHH--HHHHHHhhhccCChHHHHHHHHHHHH-------hccCCCchHHHhHHHHHHhcC--
Q 040338 34 IDDDYRVFCDIGP-RYLFTYNT--MINGGVRCLCVGNIKMALHLHGLVKK-------FYFVSDESIAKSSIDMHVKCG-- 101 (385)
Q Consensus 34 ~~~A~~~~~~~~~-~~~~~~~~--li~~~~~~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g-- 101 (385)
..+|.+.++.... -++..-.. .+-.....+..++++.|...+....+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777776552 23322222 22222223347899999999999977 45 3445667777777743
Q ss_pred ---ChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHh-CCCchHHHHHHHHHHHCCCCCCHhh
Q 040338 102 ---AVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTR-HGFGFETLCTFIELWNHGFGLSSML 177 (385)
Q Consensus 102 ---~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~t 177 (385)
+.+.|..++....+.+ .|+....-..+.-... ..+...|.++|...-+.|..+-..-
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-------------------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~ 365 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-------------------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYR 365 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-------------------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHH
Confidence 5566888887776655 3554443332222222 2456789999999988876532222
Q ss_pred HHHHHHH--hcCccCccchhhHHHHHHHhCC
Q 040338 178 YATAFSA--RASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 178 ~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
. .++.. ..-..+...|...+......|.
T Consensus 366 l-a~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 366 L-ALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred H-HHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 1 22211 2234567778888888887773
No 446
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=35.41 E-value=4e+02 Score=25.41 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=103.8
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLI 217 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 217 (385)
.|....-+++..+..+-++.-+..+-.+|... .-+...|..++.+|... ..+.-..+|+++++..+ -|+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 45556667788888888888888888888775 34567777788877776 55667777887777655 3444444555
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--C-ChhhHHHHHHHH-HhcCCCCchHHHHHHHHHHH
Q 040338 218 DMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--R-NMISWMVLISAF-SQAGVLEKPRFFFFFVSLLS 293 (385)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~-~~~g~~~~a~~~~~~~~l~~ 293 (385)
..|-+.. .......|.-.+..+.-..+...-.++|+++++ + |...+-.++.-. -..|.- .....+.-+-.
T Consensus 140 ~~yEkik---~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~---~~~Vl~qdv~~ 213 (711)
T COG1747 140 DKYEKIK---KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEG---RGSVLMQDVYK 213 (711)
T ss_pred HHHHHhc---hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccc---hHHHHHHHHHH
Confidence 5554421 223334444444444444555666667777765 3 333333333222 122211 11114555667
Q ss_pred HhcccCChhhHHHHHHHHHhccc
Q 040338 294 GCSHSGPVTKGKHYFTAMAKFTY 316 (385)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~ 316 (385)
-|....++++|++++..+.+...
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDE 236 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcc
Confidence 78999999999999999888777
No 447
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.36 E-value=1.9e+02 Score=21.60 Aligned_cols=46 Identities=7% Similarity=-0.043 Sum_probs=36.2
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040338 137 ERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS 183 (385)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 183 (385)
.|+..+-..-+.++-+.+++..|.++|+-.+.. +.+....|-.++.
T Consensus 81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 81 VPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred CCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 588888899999999999999999999998765 4443445665553
No 448
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.10 E-value=3.6e+02 Score=24.78 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=17.2
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMA 312 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (385)
..|.++..|...+.++.|..+..+..
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~ 236 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSV 236 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhccc
Confidence 55666677777777777776666544
No 449
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.96 E-value=34 Score=25.61 Aligned_cols=32 Identities=6% Similarity=-0.084 Sum_probs=24.0
Q ss_pred hcCccCccchhhHHHHHHHhCCCCchHHHHHHHH
Q 040338 185 RASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLID 218 (385)
Q Consensus 185 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 218 (385)
....|.-.+|..+|+.|++.|-+||. |+.|+.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34456778899999999999998875 444443
No 450
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=34.80 E-value=2.4e+02 Score=22.59 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 156 GFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 156 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
+++|...|++... ..|+..+|+.-+.... +|-+++.++.+.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 4555566665555 5899999998887664 56777888877754
No 451
>PRK12356 glutaminase; Reviewed
Probab=34.76 E-value=1.8e+02 Score=25.61 Aligned_cols=60 Identities=12% Similarity=0.014 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHhCCC--C-----------CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 040338 317 TCYFVCMVDLLGLSGLLGEAKKLIDEMPS--K-----------PTCVIWGALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
...-..+......||-+|.+=++.-+.-- | |........-=.+-++|+--.+..+++.+.
T Consensus 231 ~~~~r~v~s~M~TCGmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIav~SP~LD~~GNSv~G~~~le~ls 303 (319)
T PRK12356 231 ADNVPYILAEMTMEGLYERSGDWAYTVGLPGKSGVGGGILAVVPGKMGIAAFSPPLDSAGNSVRGQKAVAYVA 303 (319)
T ss_pred HHHHHHHHHHHHHcCCccchhhHHHHhCCccccCccceeEEEeCCceEEEEECCCcCCCCCcHHHHHHHHHHH
Confidence 33444555666778888887776655421 1 433222122222345677777777777664
No 452
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=34.54 E-value=1.3e+02 Score=20.68 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=30.0
Q ss_pred HHHHhcccCChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHH
Q 040338 291 LLSGCSHSGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLI 340 (385)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 340 (385)
+-.-|-+.|-.+.+.+.+..-..... ..+...|+.++..++.-.-|+.++
T Consensus 38 I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 38 LAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred HHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHHh
Confidence 33445555666666666666555333 566666777777766666666554
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.49 E-value=1.3e+02 Score=27.70 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=51.1
Q ss_pred HhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 91 KSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
-.|++.++-.|++..|+++++.+.-... .+|.+.+.-.+.+|--+.-+|.=.+++.+|.++|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~-----------~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKK-----------GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccc-----------hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888889999999999988743211 24555556677788888889999999999999998864
No 454
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=34.39 E-value=3.6e+02 Score=24.59 Aligned_cols=102 Identities=10% Similarity=0.035 Sum_probs=61.4
Q ss_pred HHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHHHHHHHhccc
Q 040338 237 ALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHYFTAMAKFTY 316 (385)
Q Consensus 237 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (385)
.|..-+-.+|++++|..++.+.+ +.||.++-.. ..+-..---+..|...+|+-.|.-+-+++....+
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~---VETygsm~~~----------ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F 202 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQ---VETYGSMEKS----------EKVAFILEQMRLCLLRLDYVRAQIISKKINKKFF 202 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc---hhhhhhhHHH----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhc
Confidence 34455555666666666665554 3344333110 0000112234556667777777777777666555
Q ss_pred ---------hhhHHHHHHHHHccCCHHHHHHHHHhCCCCCCcch
Q 040338 317 ---------TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKPTCVI 351 (385)
Q Consensus 317 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 351 (385)
...|+.++......+.+=++.+.|+..-..|+..+
T Consensus 203 ~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 203 EKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred CCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 66788888888888888888888888766444433
No 455
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=33.78 E-value=5.1e+02 Score=26.15 Aligned_cols=119 Identities=10% Similarity=-0.062 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHH--------hccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccc----cchHHHHHHhcC--
Q 040338 69 KMALHLHGLVKK--------FYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWK----FGIIRLLIMFQK-- 134 (385)
Q Consensus 69 ~~a~~~~~~m~~--------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~a~~~~~~-- 134 (385)
++...+++...+ .++..+..+...++... .|+..+++.+++.+......... =..+.+.+.+.+
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 455556665554 24555666666666543 79999999998875321100000 011223333222
Q ss_pred -----CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccC
Q 040338 135 -----MPERDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190 (385)
Q Consensus 135 -----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 190 (385)
-..+...+-.+++.+ ++.++++.|+.++.+|.+.|..|....-..++.+.-..|.
T Consensus 249 ~~ydk~gd~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 249 VLYDKEGDAHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred hhcccCCCCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 112222223333333 3568899999999999999988876665555555544443
No 456
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.82 E-value=1.1e+02 Score=21.83 Aligned_cols=62 Identities=11% Similarity=-0.055 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCc--cCccchhhHHHHHHHhCCC
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASV--YDLEWGPHLHSRVVHMEPS 207 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~ 207 (385)
..+|..|...++.++|...+.++.-. .--......++..+... ...+....++..+.+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45667777889999999988886321 01112223333333332 2334455666666666553
No 457
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=32.23 E-value=2.5e+02 Score=22.03 Aligned_cols=118 Identities=15% Similarity=-0.027 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHhccCC-CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHH
Q 040338 66 GNIKMALHLHGLVKKFYFVS-DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWN 144 (385)
Q Consensus 66 ~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (385)
+....+...+.......... ....+......+...+.+..+...+...... .........+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 99 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-----------------ELLPNLAEALL 99 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----------------hhccchHHHHH
Confidence 33444444444444332111 2344455555555555555555555444321 00023334444
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH-HhcCccCccchhhHHHHH
Q 040338 145 TMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFS-ARASVYDLEWGPHLHSRV 201 (385)
Q Consensus 145 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~ 201 (385)
.....+...+++..+...+.........+ ......... .+...|+++.+...+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 100 NLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555555555432222 111111111 344455555555555554
No 458
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.16 E-value=3.5e+02 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=10.1
Q ss_pred ChhhHHHHHHHHHhcCCCCchHHHH
Q 040338 262 NMISWMVLISAFSQAGVLEKPRFFF 286 (385)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~ 286 (385)
++-+=..++..| +.|...+....|
T Consensus 370 dVLsEe~IL~Wy-k~gh~~KGk~~F 393 (412)
T KOG2297|consen 370 DVLSEETILKWY-KEGHVAKGKSVF 393 (412)
T ss_pred HhhhhHHHHHHH-HhccccccHHHH
Confidence 333333444444 344444444443
No 459
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.93 E-value=1.7e+02 Score=20.10 Aligned_cols=52 Identities=17% Similarity=0.049 Sum_probs=30.4
Q ss_pred hhccCChHHHHHHHHHHHH----hccCCC----chHHHhHHHHHHhcCChhHHHHHHHhc
Q 040338 62 CLCVGNIKMALHLHGLVKK----FYFVSD----ESIAKSSIDMHVKCGAVDYAESAFLRM 113 (385)
Q Consensus 62 ~~~~~~~~~a~~~~~~m~~----~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m 113 (385)
+.+.|++..|.+.+..... .+..+. ....-.+.......|+.++|...+++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3446888888555555443 332221 112222445566679999999988765
No 460
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=31.90 E-value=4.5e+02 Score=24.94 Aligned_cols=88 Identities=10% Similarity=0.125 Sum_probs=59.7
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHH---HccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHH
Q 040338 288 FVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLL---GLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACC 360 (385)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~ 360 (385)
-+.++.-+.+.|-.++|..++..+...++ ...|..+|+.- ..+| +..+.+.|+.|... .++..|...+.--.
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 34556666677888888888888888777 56666666543 2233 77777777777664 56667777766666
Q ss_pred hcCChHHHHHHHHHHH
Q 040338 361 SHYNTKLAELVMRNLL 376 (385)
Q Consensus 361 ~~g~~~~a~~~~~~~~ 376 (385)
..|..+.+-.++.+..
T Consensus 542 ~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAM 557 (568)
T ss_pred cCCCcccccHHHHHHH
Confidence 7777777777655543
No 461
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=31.72 E-value=1.1e+02 Score=28.53 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHH-HHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 040338 147 ISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAF-SARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGC 225 (385)
Q Consensus 147 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 225 (385)
.+.+...+.++.|..++.+..+ +.||-..|-..= .++.+.+++..|+.=....++..+ +.+++|.+.|
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP--------~~~K~Y~rrg- 79 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDP--------TYIKAYVRRG- 79 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCc--------hhhheeeecc-
Q ss_pred CCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc--CChhhHHHHHHHH
Q 040338 226 NGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR--RNMISWMVLISAF 273 (385)
Q Consensus 226 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~ 273 (385)
.++.+.+.+.+|+..|+.... |+-.-...++.-|
T Consensus 80 --------------~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 80 --------------TAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred --------------HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
No 462
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.64 E-value=4.1e+02 Score=24.42 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=40.9
Q ss_pred hHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 040338 88 SIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIELW 167 (385)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 167 (385)
..+.-+.+.|..+|+++.|++.|.+...--. -.+..+..|-.+|..-.-.|+|..+..+..+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT----------------s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCT----------------SAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhc----------------chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 4577788899999999999999977432110 001233445555555556666766666666554
Q ss_pred H
Q 040338 168 N 168 (385)
Q Consensus 168 ~ 168 (385)
.
T Consensus 215 s 215 (466)
T KOG0686|consen 215 S 215 (466)
T ss_pred h
Confidence 4
No 463
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.51 E-value=5.6e+02 Score=25.86 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHH
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWN 168 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~ 168 (385)
-..|...|...+++..|+.++-..+.
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccC
Confidence 34477888889999999988877643
No 464
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.22 E-value=5e+02 Score=25.21 Aligned_cols=235 Identities=9% Similarity=-0.032 Sum_probs=108.5
Q ss_pred CchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 040338 86 DESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 165 (385)
....+..|++.+. .-+.+.-.++++++.. . . ...+..++++....|-.....-+.+.
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~-------------------~--~~~r~~~~Dal~~~GT~~a~~~i~~~ 365 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K-------------------K--KKARRIFLDAVAQAGTPPALKFIKQW 365 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C-------------------C--HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4456666666664 3445666666665532 1 1 45788899999999976555555555
Q ss_pred HHHCCCCCCHhhHHHHHHH--hcCccCccchhhHHHHHHH-hCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHH
Q 040338 166 LWNHGFGLSSMLYATAFSA--RASVYDLEWGPHLHSRVVH-MEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMY 242 (385)
Q Consensus 166 m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~ 242 (385)
+....+.+ ...-..+..+ ..+.-.. +..+.+.++.+ ....+....+.+.+-++ .+++.-+
T Consensus 366 i~~~~~~~-~ea~~~~~~~~~~~~~Pt~-~~l~~l~~l~~~~~~~~~~~l~~sa~l~~---------------~~lv~~~ 428 (574)
T smart00638 366 IKNKKITP-LEAAQLLAVLPHTARYPTE-EILKALFELAESPEVQKQPYLRESALLAY---------------GSLVRRY 428 (574)
T ss_pred HHcCCCCH-HHHHHHHHHHHHhhhcCCH-HHHHHHHHHhcCccccccHHHHHHHHHHH---------------HHHHHHH
Confidence 55544443 2222222222 2223333 33444444444 34555554444433332 3444433
Q ss_pred HcCCCh------hHHHHHHHhcc-----cCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCC----hhhHHHH
Q 040338 243 AEGGST------QKADLAFELMS-----RRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGP----VTKGKHY 307 (385)
Q Consensus 243 ~~~g~~------~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~----~~~a~~~ 307 (385)
+..... ++....+.... +.|..--...|.+++..|.......+- .++. ..... --.|..-
T Consensus 429 c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~---~~l~--~~~~~~~~iR~~Av~A 503 (574)
T smart00638 429 CVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLE---PYLE--GAEPLSTFIRLAAILA 503 (574)
T ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHH---HhcC--CCCCCCHHHHHHHHHH
Confidence 333221 22222222111 122222334566666666544332111 1110 01100 0123334
Q ss_pred HHHHHhccchhhHHHHHHHHHccCCHHHHH--HHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 040338 308 FTAMAKFTYTCYFVCMVDLLGLSGLLGEAK--KLIDEMPSKPTCVIWGALLGACCSHYNT 365 (385)
Q Consensus 308 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~~~~~m~~~p~~~~~~~li~~~~~~g~~ 365 (385)
+..+....+..+...++..|...+...+.. .++--|..+|+......+........+.
T Consensus 504 lr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~ 563 (574)
T smart00638 504 LRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNL 563 (574)
T ss_pred HHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcH
Confidence 444444444556666666666655444422 2233334347777767666666554443
No 465
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.98 E-value=2.1e+02 Score=20.79 Aligned_cols=42 Identities=26% Similarity=0.153 Sum_probs=26.3
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh
Q 040338 54 TMINGGVRCLCVGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK 99 (385)
Q Consensus 54 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 99 (385)
++|.-+.+| ...++|+++.+.|.+.| ..+...-+.|-..+.+
T Consensus 66 tViD~lrRC---~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 66 TVIDYLRRC---KTDEEALEVINYLEKRG-EITPEEAKELRSILVK 107 (128)
T ss_pred hHHHHHHHh---CcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 455555555 67788888888888887 4455555554444433
No 466
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=30.89 E-value=3e+02 Score=24.88 Aligned_cols=40 Identities=13% Similarity=0.045 Sum_probs=25.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhH
Q 040338 139 DLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLY 178 (385)
Q Consensus 139 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 178 (385)
|...--.|+..|...|-.+.|...|..+.-+.+.-|...|
T Consensus 216 n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h 255 (365)
T PF09797_consen 216 NYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH 255 (365)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH
Confidence 3334445667788888888888888777544454444443
No 467
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.43 E-value=3.5e+02 Score=23.12 Aligned_cols=85 Identities=13% Similarity=0.183 Sum_probs=53.5
Q ss_pred CCchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcccCChhhHHHH
Q 040338 228 IESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKPRFFFFFVSLLSGCSHSGPVTKGKHY 307 (385)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~l~~~~~~~~~~~~a~~~ 307 (385)
...+......+...|.+.|++.+|+..|=.-.+++...+..++.-....|...++ .+| ....+--|...+++..|...
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~-dlf-i~RaVL~yL~l~n~~~A~~~ 163 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA-DLF-IARAVLQYLCLGNLRDANEL 163 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H-HHH-HHHHHHHHHHTTBHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch-hHH-HHHHHHHHHHhcCHHHHHHH
Confidence 3456677788899999999999999888666555555554466655666766665 444 22333344556778888887
Q ss_pred HHHHHhc
Q 040338 308 FTAMAKF 314 (385)
Q Consensus 308 ~~~~~~~ 314 (385)
++...+.
T Consensus 164 ~~~f~~~ 170 (260)
T PF04190_consen 164 FDTFTSK 170 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
No 468
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.99 E-value=5.2e+02 Score=25.05 Aligned_cols=175 Identities=8% Similarity=-0.140 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHcccchhhHHh-------------hhhhHHHHHhhhCC--------CChhhHHHHHHHHHhh-hccC-
Q 040338 10 LPIARKIHAQLISTCLISSIFLQ-------------LIDDDYRVFCDIGP--------RYLFTYNTMINGGVRC-LCVG- 66 (385)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~-------------~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-~~~~- 66 (385)
...+...++.....|..-..... +++.|...|...-+ -++...+-+-..|..- ....
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 45566667666666533222221 88888888886532 1233334444443330 0022
Q ss_pred ChHHHHHHHHHHHHhccCCCchHHHhHHHHHHh-cCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHH
Q 040338 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVK-CGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNT 145 (385)
Q Consensus 67 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (385)
+.+.|..++....+.|. |+....-..+..... ..+...|.+.|....+.|. +...-+-+
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-------------------~~A~~~la 367 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-------------------ILAIYRLA 367 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-------------------hHHHHHHH
Confidence 67889999999888774 344433333222222 2457889999988877663 33222222
Q ss_pred HHHHHH--hCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCC
Q 040338 146 MISILT--RHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 146 li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 206 (385)
++.... ...+.+.|..++.+.-+.| .|-..--...+..+.. +..+.+.-.+..+...|.
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 222222 3456788899999988887 3332222334445555 777777777777776665
No 469
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=29.68 E-value=4e+02 Score=23.58 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCC
Q 040338 67 NIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117 (385)
Q Consensus 67 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (385)
+-+...++-....+.|+..|...+..++.. ..|++.+|+..+++....|
T Consensus 190 d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~g 238 (346)
T KOG0989|consen 190 DEDIVDRLEKIASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLG 238 (346)
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccC
Confidence 333344444455667899999988887764 3699999999998876533
No 470
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=29.68 E-value=1.9e+02 Score=19.76 Aligned_cols=26 Identities=4% Similarity=-0.073 Sum_probs=13.5
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHH
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGG 59 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~ 59 (385)
+-+.|..+++-++ .++..|.+++.++
T Consensus 45 ~~~qa~~LLdiL~-rGp~Af~~F~esL 70 (84)
T cd08810 45 SRKQAGKLLDILA-ENPKGLDALIESI 70 (84)
T ss_pred cHHHHHHHHHHHh-hCchHHHHHHHHH
Confidence 4455555555555 5555555555543
No 471
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.26 E-value=1.9e+02 Score=19.81 Aligned_cols=64 Identities=3% Similarity=-0.118 Sum_probs=38.4
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHH
Q 040338 138 RDLVSWNTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVH 203 (385)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 203 (385)
|....|..-+....... .+++ ++|+.....|+..|...|.+++....-.=-.+...++++.|..
T Consensus 8 ~~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred ChHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 33445555554332222 2333 7888888889988988888888765544445555555555543
No 472
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.23 E-value=1.5e+02 Score=25.04 Aligned_cols=53 Identities=11% Similarity=-0.033 Sum_probs=32.8
Q ss_pred HHHHHhcccCChhhHHHHHHHHHhccc--------hhhHHHHHHHHHccCCHHHHHHHHHh
Q 040338 290 SLLSGCSHSGPVTKGKHYFTAMAKFTY--------TCYFVCMVDLLGLSGLLGEAKKLIDE 342 (385)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~ 342 (385)
.+..-|.+.|++++|.++|+.+..... ..+...+..++.+.|+.++.+.+-=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444555666667777777776643222 44555667777778888777665433
No 473
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.71 E-value=87 Score=20.58 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=29.1
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCccC
Q 040338 151 TRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVYD 190 (385)
Q Consensus 151 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 190 (385)
...++.+.+.+++++....|..|.......+..+..+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888877777777766655554
No 474
>PRK12357 glutaminase; Reviewed
Probab=28.37 E-value=3e+02 Score=24.40 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=14.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHhC
Q 040338 319 YFVCMVDLLGLSGLLGEAKKLIDEM 343 (385)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m 343 (385)
.-.........||-+|.+=++.-+.
T Consensus 238 ~~r~v~a~M~tcGmYd~SG~fa~~V 262 (326)
T PRK12357 238 VARLTKALMLTCGMYNASGKFAAFV 262 (326)
T ss_pred HHHHHHHHHHhcCCccchhhHHHHh
Confidence 3344455556677777766665544
No 475
>PRK10941 hypothetical protein; Provisional
Probab=28.28 E-value=2.2e+02 Score=24.53 Aligned_cols=74 Identities=8% Similarity=-0.076 Sum_probs=50.9
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC----CCCcchHHHHHHHHH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS----KPTCVIWGALLGACC 360 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~li~~~~ 360 (385)
..+++-.+|.+.++++.|.++.+.+....+ +.-+.--.-.|.+.|.+..|..=++...+ .|+...-...+....
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 566777788888888888999998888888 33344455567888888888776665543 255555555554443
No 476
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=28.17 E-value=1.1e+02 Score=16.75 Aligned_cols=17 Identities=12% Similarity=-0.222 Sum_probs=9.5
Q ss_pred HHHHHHhcCChHHHHHH
Q 040338 355 LLGACCSHYNTKLAELV 371 (385)
Q Consensus 355 li~~~~~~g~~~~a~~~ 371 (385)
+.-.+...|++++|..+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 44445556666666666
No 477
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=27.98 E-value=46 Score=20.48 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=21.1
Q ss_pred CChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHHHH
Q 040338 101 GAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMISIL 150 (385)
Q Consensus 101 g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 150 (385)
|-.++.+.+|++|.+++. .|....||-.+.=|
T Consensus 6 gy~~~lI~vFK~~pSr~Y------------------D~~Tr~W~F~L~Dy 37 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNY------------------DPKTRKWNFSLEDY 37 (55)
T ss_pred cCCHHHHHHHHcCccccc------------------CccceeeeeeHHHH
Confidence 455677788888877765 56666666555443
No 478
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=27.78 E-value=1.1e+02 Score=25.47 Aligned_cols=54 Identities=19% Similarity=0.070 Sum_probs=28.3
Q ss_pred HccCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 040338 328 GLSGLLGEAKKLIDEMPSK--PTCVIWGALLGACCSHYNTKLAELVMRNLLQLDVK 381 (385)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 381 (385)
.+.++.+.|.+++.+..+- -...+|-.+...-.+.|+.+.|.+.+++..+.+|.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3445555555555555442 23445555555555555555555555555555544
No 479
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=27.74 E-value=92 Score=21.31 Aligned_cols=43 Identities=7% Similarity=-0.103 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCC
Q 040338 71 ALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPS 117 (385)
Q Consensus 71 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (385)
+..+++.+.+.|+- +..-+..+ -++....++|..+++.+..+|
T Consensus 16 v~~ild~L~~~gvl-t~~~~e~I---~~~~t~~~qa~~Lld~L~trG 58 (86)
T cd08323 16 TSYIMDHMISDGVL-TLDEEEKV---KSKATQKEKAVMLINMILTKD 58 (86)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHH---HcCCChHHHHHHHHHHHHhcC
Confidence 34456666665532 32222221 123444555666555554433
No 480
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=27.64 E-value=5.1e+02 Score=24.14 Aligned_cols=172 Identities=17% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcc--CCCchHHHhHHHHHHhcCChhHH-----HHHHHhccCCCccccccchHHHHHHhcCCCCCCcc
Q 040338 69 KMALHLHGLVKKFYF--VSDESIAKSSIDMHVKCGAVDYA-----ESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLV 141 (385)
Q Consensus 69 ~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a-----~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (385)
+.+.++.+.|....- .|-..-..++|..||+.++++-. +.+++-+...+. |-..
T Consensus 72 ~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~l-------------------prsd 132 (669)
T KOG3636|consen 72 NDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNL-------------------PRSD 132 (669)
T ss_pred HHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcC-------------------Ccch
Q ss_pred hHHHHH--------HHHHhCCCchHHHHHHHH---------HHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHh
Q 040338 142 SWNTMI--------SILTRHGFGFETLCTFIE---------LWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHM 204 (385)
Q Consensus 142 ~~~~li--------~~~~~~~~~~~a~~~~~~---------m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (385)
+||..- ..|...|++-...+++-. +....+.||..+.+.+-..++..-..+-...+|+...+.
T Consensus 133 ~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qq 212 (669)
T KOG3636|consen 133 EFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQ 212 (669)
T ss_pred hhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhHHHHHHHhccc----CChhhHHHHHHHHH
Q 040338 205 EPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQKADLAFELMSR----RNMISWMVLISAFS 274 (385)
Q Consensus 205 ~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~ 274 (385)
+-+--+.....++-.=++.- -.-.+...-++++++++.|.. .|+.-+-.|..-|+
T Consensus 213 aDPF~vffLaliiLiNake~---------------ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 213 ADPFLVFFLALIILINAKEE---------------ILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred CCceehHHHHHHHhcccHHH---------------HhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
No 481
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.51 E-value=4.8e+02 Score=25.06 Aligned_cols=66 Identities=6% Similarity=-0.204 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhh---HHHHHHHhcCccCccchhhHHHHHHHhCCCCch
Q 040338 143 WNTMISILTRHGFGFETLCTFIELWNHGFGLSSML---YATAFSARASVYDLEWGPHLHSRVVHMEPSLDV 210 (385)
Q Consensus 143 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 210 (385)
...++.-|.+.++.++|..++..|.=. .. .... .+.+.+.+.+..--++.+..++.++..-..|..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~-~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~r 479 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWN-TM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTR 479 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCcc-cc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCc
Confidence 446788999999999999999988322 11 1233 344455556665556666666766665444443
No 482
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.70 E-value=65 Score=21.61 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=25.1
Q ss_pred hHHH-hHHHHHHhcCChhHHHHHHHhccCCCc
Q 040338 88 SIAK-SSIDMHVKCGAVDYAESAFLRMLNPSL 118 (385)
Q Consensus 88 ~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~ 118 (385)
.-|+ ++++.+.+|.-.++|+++++-|.+.|.
T Consensus 31 ~gy~PtV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 31 SGYNPTVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred CCCCchHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 3444 467888999999999999999988774
No 483
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=26.66 E-value=2.4e+02 Score=26.10 Aligned_cols=20 Identities=5% Similarity=-0.165 Sum_probs=12.8
Q ss_pred HHHHHHhCCCchHHHHHHHH
Q 040338 146 MISILTRHGFGFETLCTFIE 165 (385)
Q Consensus 146 li~~~~~~~~~~~a~~~~~~ 165 (385)
+..-+...|.++.|.+++++
T Consensus 124 laadhvAAGsFetAm~LLnr 143 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNR 143 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHH
T ss_pred cHHHHHHhCCHHHHHHHHHH
Confidence 34456667777777777765
No 484
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.56 E-value=2.4e+02 Score=20.05 Aligned_cols=61 Identities=15% Similarity=-0.011 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcc--CccchhhHHHHHHHhCC
Q 040338 144 NTMISILTRHGFGFETLCTFIELWNHGFGLSSMLYATAFSARASVY--DLEWGPHLHSRVVHMEP 206 (385)
Q Consensus 144 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~ 206 (385)
..++..|...+++++|...+.++..... -......++..+...+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 4467788889999999999988753211 1222334444444432 23344555666665554
No 485
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.47 E-value=5.7e+02 Score=24.32 Aligned_cols=100 Identities=12% Similarity=-0.015 Sum_probs=53.9
Q ss_pred HHHHHHHHH-HHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHHH
Q 040338 70 MALHLHGLV-KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMIS 148 (385)
Q Consensus 70 ~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 148 (385)
...+.+... .+.|+..+......++.. ..|+...|+.++++......- .=..+.+.+++ .-.+......++.
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~~--~it~~~V~~~l---g~~~~~~~~~l~~ 256 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTDS--KLTGVKIRKMI---GYHGIEFLTSFIK 256 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCCC--CcCHHHHHHHh---CCCCHHHHHHHHH
Confidence 334444444 335777677766555432 358999999999875421100 00112222222 1234444455555
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHh
Q 040338 149 ILTRHGFGFETLCTFIELWNHGFGLSSM 176 (385)
Q Consensus 149 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 176 (385)
+....+....|+.++++|.+.|..|...
T Consensus 257 si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 257 SLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 5554444557777888887777766543
No 486
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=26.20 E-value=1.3e+02 Score=22.78 Aligned_cols=42 Identities=2% Similarity=-0.121 Sum_probs=29.9
Q ss_pred hHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHH
Q 040338 177 LYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDM 219 (385)
Q Consensus 177 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 219 (385)
|...++. +-+.|-..+...++++|.+.|+..+...|+.+++-
T Consensus 112 tlGvL~~-ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLAL-AKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred hhHHHHH-HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 4444443 44557788888999999999998888887666543
No 487
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=26.18 E-value=2.8e+02 Score=25.03 Aligned_cols=53 Identities=11% Similarity=-0.027 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCc
Q 040338 65 VGNIKMALHLHGLVKKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSL 118 (385)
Q Consensus 65 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 118 (385)
...+-+|.-+++...... +-+...--.+++.|...|-.+.|...|..+.-+.+
T Consensus 196 ~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~I 248 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNI 248 (365)
T ss_pred HHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHH
Confidence 445567777777766653 33555555678999999999999999988865554
No 488
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=26.05 E-value=1.8e+02 Score=20.33 Aligned_cols=27 Identities=4% Similarity=0.025 Sum_probs=16.5
Q ss_pred hhhhHHHHHhhhCCCChhhHHHHHHHH
Q 040338 33 LIDDDYRVFCDIGPRYLFTYNTMINGG 59 (385)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~li~~~ 59 (385)
+.++|.++++-++..++.+|.....++
T Consensus 50 ~~~k~~~LLdiLp~RG~~AF~~F~~aL 76 (94)
T cd08327 50 SRRKTMKLLDILPSRGPKAFHAFLDSL 76 (94)
T ss_pred hHHHHHHHHHHHHhhChhHHHHHHHHH
Confidence 556666666666666666666655553
No 489
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=25.94 E-value=2.1e+02 Score=19.59 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=35.2
Q ss_pred HHHHHHHcCCChhHHHHHHHhccc-CChhhHHHHHHHHHhcCCCCch
Q 040338 237 ALVTMYAEGGSTQKADLAFELMSR-RNMISWMVLISAFSQAGVLEKP 282 (385)
Q Consensus 237 ~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~a 282 (385)
.+.......|+.+.|..+++.+.+ ....-+..++.++-..|...-|
T Consensus 39 ~I~a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 39 QILAEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCCccHH
Confidence 333344445899999999999997 6777888999999988875444
No 490
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=25.89 E-value=1.9e+02 Score=19.59 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHhcccCChhhHHHHHHHHHhcCCCCch
Q 040338 236 KALVTMYAEGGSTQKADLAFELMSRRNMISWMVLISAFSQAGVLEKP 282 (385)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a 282 (385)
..+-......|+.+.|..+++.+. +...-+..++.++...|...-|
T Consensus 36 e~I~a~~~~~G~~~aa~~Ll~~L~-r~~~Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 36 ERIQAAENNSGNIKAAWTLLDTLV-RRDNWLEPFLDALRECGLGHLA 81 (84)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHh-ccCChHHHHHHHHHHcCCHHHH
Confidence 444445556789999999999999 6777888999999888865444
No 491
>PF13934 ELYS: Nuclear pore complex assembly
Probab=25.88 E-value=3.9e+02 Score=22.24 Aligned_cols=86 Identities=9% Similarity=-0.009 Sum_probs=52.9
Q ss_pred HHHHHHHHhcc--cCChhhHHHHHHHHHhccc-hhhHHHHHHHHHccCCHHHHHHHHHhCCCCC-CcchHHHHHHHHHhc
Q 040338 287 FFVSLLSGCSH--SGPVTKGKHYFTAMAKFTY-TCYFVCMVDLLGLSGLLGEAKKLIDEMPSKP-TCVIWGALLGACCSH 362 (385)
Q Consensus 287 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~ 362 (385)
.|...+.++.. .++++.|.+.+..- .. +..-.-++.++...|+.+.|..+++.+...+ +...-..++.. ...
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~ 153 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LAN 153 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHc
Confidence 56666666654 46666777666332 11 2333357888888999999999999987542 22223333334 455
Q ss_pred CChHHHHHHHHHHH
Q 040338 363 YNTKLAELVMRNLL 376 (385)
Q Consensus 363 g~~~~a~~~~~~~~ 376 (385)
+...+|..+.+...
T Consensus 154 ~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 154 GLVTEAFSFQRSYP 167 (226)
T ss_pred CCHHHHHHHHHhCc
Confidence 77777777655443
No 492
>PRK12798 chemotaxis protein; Reviewed
Probab=25.39 E-value=5.4e+02 Score=23.76 Aligned_cols=135 Identities=13% Similarity=0.040 Sum_probs=84.5
Q ss_pred CCChhHHHHHHHhccc----CChhhHHHHHHHH-HhcCCCCchHHHH---------------HHHHHHHHhcccCChhhH
Q 040338 245 GGSTQKADLAFELMSR----RNMISWMVLISAF-SQAGVLEKPRFFF---------------FFVSLLSGCSHSGPVTKG 304 (385)
Q Consensus 245 ~g~~~~A~~~~~~m~~----~~~~~~~~li~~~-~~~g~~~~a~~~~---------------~~~~l~~~~~~~~~~~~a 304 (385)
.|+.++|.+.+..+.. +....|-.|+.+- ....++.+|+.++ ..-.-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 4788888888887764 2445666666554 3455677888777 444555556677888777
Q ss_pred HHHHHHHHhccc-----hhhHHHHHHHHH---ccCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 040338 305 KHYFTAMAKFTY-----TCYFVCMVDLLG---LSGLLGEAKKLIDEMPSKPTCVIWGALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 305 ~~~~~~~~~~~~-----~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
..+-..-..... ......+...+. ..-+.+.-..++..|...--...|-.+.+.-...|+.+.|...-++.+
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 655555444433 223333333333 333455666666666653344578888888888888888877777776
Q ss_pred hcc
Q 040338 377 QLD 379 (385)
Q Consensus 377 ~~~ 379 (385)
...
T Consensus 285 ~L~ 287 (421)
T PRK12798 285 KLA 287 (421)
T ss_pred Hhc
Confidence 654
No 493
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.20 E-value=1.5e+02 Score=21.46 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=23.6
Q ss_pred hHHHHHHhcCChhHHHHHHHhccCCCc
Q 040338 92 SSIDMHVKCGAVDYAESAFLRMLNPSL 118 (385)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~ 118 (385)
++|+.+.+|...++|+++.+-|.++|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 467888899999999999999988874
No 494
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=25.06 E-value=6.4e+02 Score=24.45 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=59.1
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhccc--hhhHHHHHHHHHccCCHHHHHHHHHhCCC-----CCCcchHHHHHHHH
Q 040338 287 FFVSLLSGCSHSGPVTKGKHYFTAMAKFTY--TCYFVCMVDLLGLSGLLGEAKKLIDEMPS-----KPTCVIWGALLGAC 359 (385)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~p~~~~~~~li~~~ 359 (385)
+|...+.--...|+.+...-+|+...-... ...|--.+.-....|+.+-|..++....+ .|......+.+ +
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~ 376 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--E 376 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--H
Confidence 677777777777787777777777655444 55555566666666887777777665544 14444444433 3
Q ss_pred HhcCChHHHHHHHHHHHhcc
Q 040338 360 CSHYNTKLAELVMRNLLQLD 379 (385)
Q Consensus 360 ~~~g~~~~a~~~~~~~~~~~ 379 (385)
-..|+++.|..+++.+.+.-
T Consensus 377 e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC
Confidence 34568888888888876544
No 495
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=25.00 E-value=6.4e+02 Score=24.46 Aligned_cols=131 Identities=9% Similarity=0.048 Sum_probs=63.8
Q ss_pred chHHHHHHHHHhCCCc------hHHHHHHHHHHHCCC-CCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHH
Q 040338 141 VSWNTMISILTRHGFG------FETLCTFIELWNHGF-GLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVG 213 (385)
Q Consensus 141 ~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 213 (385)
.+|..++.-+|..... ++....+.+....+. .-|..--...|.+++..|...... .+..........+...-
T Consensus 419 l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~-~l~~~l~~~~~~~~~iR 497 (574)
T smart00638 419 LAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIK-VLEPYLEGAEPLSTFIR 497 (574)
T ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHH-HHHHhcCCCCCCCHHHH
Confidence 4556666655555432 344444444333221 112222345677888888755443 33333332333455555
Q ss_pred HHHHHHHHhcCCCCCCchhhHHHHHHHHHHcCCChhH--HHHHHHhccc-CChhhHHHHHHHHHh
Q 040338 214 SGLIDMYLKCGCNGIESSIQIGKALVTMYAEGGSTQK--ADLAFELMSR-RNMISWMVLISAFSQ 275 (385)
Q Consensus 214 ~~li~~~~~~g~~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~-~~~~~~~~li~~~~~ 275 (385)
...+.++.+... .....+...++..|...+...+ ...++--|.. |+......+......
T Consensus 498 ~~Av~Alr~~a~---~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~ 559 (574)
T smart00638 498 LAAILALRNLAK---RDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNK 559 (574)
T ss_pred HHHHHHHHHHHH---hCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 566666654431 1233455666666666544332 2233334443 666666655554443
No 496
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.91 E-value=4.8e+02 Score=24.98 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=53.5
Q ss_pred HHHHHHHHHH-HHhccCCCchHHHhHHHHHHhcCChhHHHHHHHhccCCCccccccchHHHHHHhcCCCCCCcchHHHHH
Q 040338 69 KMALHLHGLV-KKFYFVSDESIAKSSIDMHVKCGAVDYAESAFLRMLNPSLFCWKFGIIRLLIMFQKMPERDLVSWNTMI 147 (385)
Q Consensus 69 ~~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 147 (385)
++..+.+... .+.|+..+......++... .|++..+...++++...+.. -..+....++ ..+.......++
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~---It~~~V~~~l---~~~~~~~if~Li 249 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTP---VTRKQVEEAL---GLPPQERLRGIA 249 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCC---CCHHHHHHHH---CCCcHHHHHHHH
Confidence 3444444443 3447666666655555433 47788887777775432210 0011111111 223344444566
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCC
Q 040338 148 SILTRHGFGFETLCTFIELWNHGFGLS 174 (385)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~m~~~g~~p~ 174 (385)
+++ ..++.++|+.+++++...|..|.
T Consensus 250 ~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 250 AAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 665 45788899999999988886664
No 497
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.73 E-value=4.9e+02 Score=22.99 Aligned_cols=97 Identities=7% Similarity=-0.095 Sum_probs=66.5
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhcCccCccchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCCCCCCchhhHHHHHH
Q 040338 160 LCTFIELWNHGFGLSSMLYATAFSARASVYDLEWGPHLHSRVVHMEPSLDVFVGSGLIDMYLKCGCNGIESSIQIGKALV 239 (385)
Q Consensus 160 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~li 239 (385)
.++++.|.+.++.|.-..|..+.-.+++.=.+.+++.+|+.+... ..-|..|+..||.. -.++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsm------------lil~ 325 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSM------------LILV 325 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHH------------HHHH
Confidence 467888888899999999888877788888889999999988643 33366677776642 2334
Q ss_pred HHHHcCCChhHHHHHHHhcccCChhhHHHHHHHH
Q 040338 240 TMYAEGGSTQKADLAFELMSRRNMISWMVLISAF 273 (385)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 273 (385)
+--.-.|++..-.++++.-..-|+...-.+...+
T Consensus 326 Re~il~~DF~~nmkLLQ~yp~tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 326 RERILEGDFTVNMKLLQNYPTTDISKMLAVADSL 359 (370)
T ss_pred HHHHHhcchHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4444568888888887666544554444333333
No 498
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.29 E-value=1.9e+02 Score=20.51 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=18.1
Q ss_pred HhHHHHHHhcCChhHHHHHHHhccC
Q 040338 91 KSSIDMHVKCGAVDYAESAFLRMLN 115 (385)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~ 115 (385)
..++.-|...|+.++|..-+.++..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~ 30 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKL 30 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 4566677778999999999888643
No 499
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=23.95 E-value=5.5e+02 Score=23.26 Aligned_cols=145 Identities=12% Similarity=0.091 Sum_probs=92.7
Q ss_pred CchhhHHHHHHHHHHcCCChhHHHHHHHhcccCChhhHHH-HHHHH------HhcCC------CCchHHHH-HHHHHHHH
Q 040338 229 ESSIQIGKALVTMYAEGGSTQKADLAFELMSRRNMISWMV-LISAF------SQAGV------LEKPRFFF-FFVSLLSG 294 (385)
Q Consensus 229 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-li~~~------~~~g~------~~~a~~~~-~~~~l~~~ 294 (385)
+-.+.++-.+-..+...|+.+.|.+++++..- ++.. +...+ ...|. ..+-..+| +.-..+..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf----~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALF----AFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 45667777888888899999999888887652 2221 11111 01111 22233344 77777888
Q ss_pred hcccCChhhHHHHHHHHHhccc---hhhHHHHHHHH-HccCCHHHHHHHHHhCCCC--CC------cchHHHHHHHHHhc
Q 040338 295 CSHSGPVTKGKHYFTAMAKFTY---TCYFVCMVDLL-GLSGLLGEAKKLIDEMPSK--PT------CVIWGALLGACCSH 362 (385)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~--p~------~~~~~~li~~~~~~ 362 (385)
..+.|-+..|.++-+-+...++ +.....+|+.| .++++++--+++.+..... .+ -..|+..+.-+...
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 8999999999999999999888 44444566666 4678888888888875541 11 24566555544433
Q ss_pred CC--------------hHHHHHHHHHHHh
Q 040338 363 YN--------------TKLAELVMRNLLQ 377 (385)
Q Consensus 363 g~--------------~~~a~~~~~~~~~ 377 (385)
++ .+.|...+++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHH
Confidence 33 2677777666554
No 500
>PRK00971 glutaminase; Provisional
Probab=23.87 E-value=4e+02 Score=23.48 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=27.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHhCCC--C-----------CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 040338 321 VCMVDLLGLSGLLGEAKKLIDEMPS--K-----------PTCVIWGALLGACCSHYNTKLAELVMRNLL 376 (385)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~--~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 376 (385)
.........||-+|.+=++.-+.-- | |........-=.+-++|+--.+.++++.+.
T Consensus 231 r~v~s~M~TcGmYD~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIav~SP~LD~~GNSv~G~~~le~ls 299 (307)
T PRK00971 231 RQVNALMLTCGMYDASGEFAYRVGLPAKSGVGGGILAVVPGEMAIAVWSPELDAKGNSLAGTAALERLS 299 (307)
T ss_pred HHHHHHHHHcCCccchHHHHHHcCCccccCCcceEEEEeCCCcEEEEECCCcCCCCCCHHHHHHHHHHH
Confidence 3344455567777776665544421 1 333221111122345666666666666654
Done!